BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014444
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 68.2 bits (165), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/384 (21%), Positives = 153/384 (39%), Gaps = 25/384 (6%)

Query: 25  LGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQ 84
           +G+  AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124

Query: 85  ISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS 144
           ++ +   +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY  
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184

Query: 145 XXXXXXXXXXXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEF 194
                        +     W+ +  L  Y+  S   A  +V      P   EL +     
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----L 240

Query: 195 FHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVS 254
           F    P A  +  E   F ++ L+    P      +   V LN    ++  P  +GAAVS
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVS 298

Query: 255 TRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTT 314
            RV ++LG  + + A +A    +   +    + +      R     +++  + VV     
Sbjct: 299 IRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQ 358

Query: 315 MAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLG--AFYLCGIPTAAILGF--WL-- 368
           +     +   MD++Q V +G  R  G++++ A  +    ++++ G+PT  ILG   WL  
Sbjct: 359 LLLFAAIYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416

Query: 369 -KFRGRGLWIGIQAGAFTQTLLLG 391
                +G W+G   G     L+LG
Sbjct: 417 QPLGAKGFWLGFIIGLSAAALMLG 440


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 69/364 (18%), Positives = 133/364 (36%), Gaps = 9/364 (2%)

Query: 25  LGMASALETLCGQAYGAQQYQRIGTQTYTAI-FCLFLVCFPLSFLWIYAGKLLVLIGQDP 83
           +G+ +AL  +  Q YGA +    G      I F L L  F +  +W         +    
Sbjct: 67  MGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLSD 126

Query: 84  QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK 143
            +   + ++M++   A+ A    + L  Y  S +    + L S AA  L++P+ +  VY 
Sbjct: 127 YVEGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVYG 186

Query: 144 SXXXXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQG------IGEFFHF 197
                         +      F A+ +    A  +   P  +    G        + +  
Sbjct: 187 KFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKPDWAVFKQIWKI 246

Query: 198 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRV 257
             P  +   LE  +F  ++ +        +    + + L+ I  LY IP  +G+A + R+
Sbjct: 247 GAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGISLSGI--LYMIPQSVGSAGTVRI 304

Query: 258 SNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAP 317
              LG     +AR      +       ++   +L   R     +++++  V+   +T+  
Sbjct: 305 GFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLL 364

Query: 318 LVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWI 377
              L    D  Q + S   RG     +  F++  AF+ CG+    +L +       G W 
Sbjct: 365 FAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWT 424

Query: 378 GIQA 381
            + A
Sbjct: 425 ALIA 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,810,708
Number of Sequences: 62578
Number of extensions: 395333
Number of successful extensions: 884
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 876
Number of HSP's gapped (non-prelim): 3
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (25.0 bits)