Query 014444
Match_columns 424
No_of_seqs 201 out of 1854
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.8E-53 1E-57 407.3 47.3 395 7-406 54-452 (455)
2 PRK10189 MATE family multidrug 100.0 7E-49 1.5E-53 381.8 46.3 397 2-402 61-467 (478)
3 PRK00187 multidrug efflux prot 100.0 2.5E-48 5.4E-53 377.9 48.9 390 4-397 44-444 (464)
4 PRK01766 multidrug efflux prot 100.0 3.7E-46 8E-51 363.8 49.1 393 5-401 47-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 1.9E-46 4.1E-51 364.2 46.7 388 3-396 46-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 9.1E-46 2E-50 356.8 47.5 384 5-401 45-434 (441)
7 TIGR01695 mviN integral membra 100.0 4.1E-34 8.8E-39 283.1 46.8 383 3-397 34-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 2.8E-34 6.1E-39 283.3 42.9 386 2-397 32-434 (488)
9 KOG1347 Uncharacterized membra 100.0 2.7E-35 5.8E-40 281.7 28.8 411 3-416 61-471 (473)
10 TIGR00797 matE putative efflux 100.0 1.9E-33 4E-38 264.6 38.7 313 3-319 26-341 (342)
11 PRK15099 O-antigen translocase 100.0 3.1E-32 6.6E-37 262.7 39.4 374 2-395 34-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 4.5E-30 9.7E-35 248.1 48.8 384 3-397 9-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 2.6E-26 5.7E-31 218.2 44.9 385 6-398 45-438 (518)
14 PRK10459 colanic acid exporter 99.9 1.2E-22 2.5E-27 200.6 40.7 365 2-396 38-404 (492)
15 COG0534 NorM Na+-driven multid 99.9 1.7E-24 3.7E-29 209.1 24.4 210 187-399 12-223 (455)
16 PRK10367 DNA-damage-inducible 99.9 1E-23 2.2E-28 203.6 26.2 207 188-396 5-211 (441)
17 PRK00187 multidrug efflux prot 99.9 2.3E-23 5.1E-28 202.9 26.3 207 187-397 5-215 (464)
18 COG2244 RfbX Membrane protein 99.9 1E-21 2.2E-26 193.4 35.5 355 2-379 39-394 (480)
19 PRK10189 MATE family multidrug 99.9 5.3E-23 1.1E-27 200.6 25.6 205 189-396 26-236 (478)
20 PRK09575 vmrA multidrug efflux 99.9 3.4E-23 7.3E-28 201.5 21.1 207 188-397 8-215 (453)
21 PRK01766 multidrug efflux prot 99.9 1.8E-22 3.9E-27 197.1 25.6 209 187-398 7-219 (456)
22 PF01554 MatE: MatE; InterPro 99.8 5E-20 1.1E-24 153.8 9.2 162 200-363 1-162 (162)
23 TIGR00797 matE putative efflux 99.8 1.1E-17 2.4E-22 157.4 25.0 194 200-396 1-196 (342)
24 PF01943 Polysacc_synt: Polysa 99.6 3.1E-12 6.8E-17 116.1 28.8 242 2-261 32-273 (273)
25 KOG1347 Uncharacterized membra 99.5 4.3E-13 9.4E-18 129.1 19.9 207 188-398 24-231 (473)
26 TIGR01695 mviN integral membra 99.5 5.5E-12 1.2E-16 125.1 24.8 167 4-173 257-428 (502)
27 TIGR02900 spore_V_B stage V sp 99.5 2.7E-12 5.8E-17 126.9 18.5 197 195-398 2-205 (488)
28 PF01554 MatE: MatE; InterPro 99.4 5.6E-14 1.2E-18 117.2 3.8 133 5-139 28-162 (162)
29 PF03023 MVIN: MviN-like prote 99.4 1.8E-10 3.8E-15 111.9 26.9 169 4-175 232-405 (451)
30 PF13440 Polysacc_synt_3: Poly 99.4 1E-09 2.2E-14 98.4 28.3 231 3-259 18-250 (251)
31 COG0728 MviN Uncharacterized m 99.3 8.1E-09 1.7E-13 99.4 29.1 166 7-175 269-439 (518)
32 PRK15099 O-antigen translocase 99.3 3E-10 6.5E-15 109.8 17.8 190 196-396 5-196 (416)
33 PRK10459 colanic acid exporter 99.1 3.2E-07 7E-12 90.8 30.3 163 3-172 241-404 (492)
34 PF04506 Rft-1: Rft protein; 98.8 4E-06 8.6E-11 82.5 26.0 203 192-396 253-469 (549)
35 COG2244 RfbX Membrane protein 98.7 3.9E-06 8.5E-11 82.8 22.3 148 4-158 248-396 (480)
36 KOG2864 Nuclear division RFT1 98.6 0.00018 3.9E-09 66.8 28.4 199 192-395 239-447 (530)
37 PF14667 Polysacc_synt_C: Poly 98.3 1.7E-05 3.8E-10 64.5 12.5 80 93-174 2-81 (146)
38 PF14667 Polysacc_synt_C: Poly 98.2 7.6E-06 1.6E-10 66.6 9.4 79 316-397 2-80 (146)
39 PF01943 Polysacc_synt: Polysa 98.1 0.00062 1.3E-08 61.4 19.9 171 212-397 20-191 (273)
40 PF07260 ANKH: Progressive ank 98.1 0.0021 4.5E-08 57.4 21.2 170 189-365 8-180 (345)
41 COG4267 Predicted membrane pro 98.0 0.011 2.3E-07 54.1 29.7 346 8-382 61-431 (467)
42 PF13440 Polysacc_synt_3: Poly 97.8 0.0037 8E-08 55.6 19.8 165 213-395 6-171 (251)
43 PF07260 ANKH: Progressive ank 97.8 0.022 4.9E-07 51.0 25.0 149 77-225 116-269 (345)
44 PF04506 Rft-1: Rft protein; 97.7 0.0083 1.8E-07 59.5 20.2 168 4-173 290-470 (549)
45 KOG2864 Nuclear division RFT1 97.2 0.02 4.4E-07 53.7 15.3 164 6-173 278-449 (530)
46 PF14184 YrvL: Regulatory prot 79.4 29 0.00063 27.4 12.7 112 51-164 4-116 (132)
47 COG0798 ACR3 Arsenite efflux p 70.7 52 0.0011 30.4 9.9 152 27-185 190-341 (342)
48 PF04505 Dispanin: Interferon- 64.3 47 0.001 23.7 6.8 40 247-286 34-73 (82)
49 COG4267 Predicted membrane pro 57.6 1.7E+02 0.0038 27.7 19.6 135 245-396 76-210 (467)
50 PF03904 DUF334: Domain of unk 51.1 75 0.0016 27.4 6.8 62 43-104 142-212 (230)
51 PF05975 EcsB: Bacterial ABC t 41.7 3.2E+02 0.0069 26.1 15.3 36 265-300 89-124 (386)
52 KOG2468 Dolichol kinase [Lipid 40.5 2.6E+02 0.0057 27.1 9.3 80 198-286 379-458 (510)
53 TIGR00822 EII-Sor PTS system, 38.6 3E+02 0.0064 24.8 13.2 32 243-274 110-141 (265)
54 PF06305 DUF1049: Protein of u 37.3 78 0.0017 21.2 4.3 11 381-391 30-40 (68)
55 TIGR00383 corA magnesium Mg(2+ 27.4 1.5E+02 0.0033 27.3 5.8 57 340-399 253-317 (318)
56 PTZ00370 STEVOR; Provisional 27.1 1.1E+02 0.0024 27.6 4.4 35 371-405 255-292 (296)
57 PRK09546 zntB zinc transporter 25.8 1.9E+02 0.0042 26.7 6.2 50 347-399 266-323 (324)
58 PF01102 Glycophorin_A: Glycop 25.8 80 0.0017 24.5 2.9 10 374-383 68-77 (122)
59 PRK03612 spermidine synthase; 25.2 7.1E+02 0.015 25.0 20.1 47 123-170 151-197 (521)
60 PF01102 Glycophorin_A: Glycop 24.9 1E+02 0.0022 24.0 3.3 26 149-174 67-92 (122)
61 COG1955 FlaJ Archaeal flagella 24.6 7.1E+02 0.015 24.8 10.3 100 107-206 155-256 (527)
62 PF00558 Vpu: Vpu protein; In 23.4 1.8E+02 0.0039 20.7 4.1 20 393-412 29-48 (81)
63 PF04505 Dispanin: Interferon- 23.1 2.8E+02 0.0061 19.7 6.0 33 34-66 43-75 (82)
64 PF03631 Virul_fac_BrkB: Virul 21.9 5.6E+02 0.012 22.6 17.9 28 114-141 186-213 (260)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.8e-53 Score=407.28 Aligned_cols=395 Identities=22% Similarity=0.320 Sum_probs=367.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCChhH
Q 014444 7 LFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQI 85 (424)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~ 85 (424)
=-++++++..+ .+.+ ..|++.|+++++||++|+||++++++..+++++++++++++..++ +.+.++++.+++.++|+
T Consensus 54 av~la~~i~~~-~~~~-~~gl~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v 131 (455)
T COG0534 54 AVGLANPIFFL-IIAI-FIGLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEV 131 (455)
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 34556555555 4444 799999999999999999999999999999999999999888886 99999999999999999
Q ss_pred HHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc-cC-CccchhHHHHHHHHHHHH
Q 014444 86 SHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNV 163 (424)
Q Consensus 86 ~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~-~~-~g~~g~ala~~i~~~~~~ 163 (424)
.+.+.+|+++..++.|+..++..+++.+|+.|++|.+++.+++..++|+++||+|+++ ++ +|+.|+|+||++++.+..
T Consensus 132 ~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~ 211 (455)
T COG0534 132 LELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGA 211 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 57 999999999999999999
Q ss_pred HHHHHHHHhccc-cccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHH
Q 014444 164 TFLAIYMKFSTA-CAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL 242 (424)
Q Consensus 164 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~ 242 (424)
+...++++++++ ......+..+++++.+|++++.+.|..+++......+.....+.+++|++ ++|+|+++.++.++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~ 289 (455)
T COG0534 212 LLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFI 289 (455)
T ss_pred HHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHH
Confidence 999999998875 22333344456678999999999999999999999999999999999965 559999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHH
Q 014444 243 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS 322 (424)
Q Consensus 243 ~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 322 (424)
+++..|++++.+++++|++|+||+|++++..+.+..+++.++...+.+++++++++.++|++|+|+.+.+..++++....
T Consensus 290 ~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~ 369 (455)
T COG0534 290 FMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALF 369 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhccHHHH
Q 014444 323 VIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 402 (424)
Q Consensus 323 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 402 (424)
.++++.+....+.+||.||+|.+++.++++.|.+.+|+.|++.++. +|..|+|++...++.++.+...+++++++|+++
T Consensus 370 ~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T COG0534 370 QPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK 448 (455)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999655 999999999999999999999999999999887
Q ss_pred HHHH
Q 014444 403 ASKA 406 (424)
Q Consensus 403 ~~~~ 406 (424)
..++
T Consensus 449 ~~~~ 452 (455)
T COG0534 449 AVAA 452 (455)
T ss_pred hhhc
Confidence 5543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=7e-49 Score=381.83 Aligned_cols=397 Identities=15% Similarity=0.148 Sum_probs=357.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG 80 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 80 (424)
|+..+-++++..+..+ ...+ ..|++.|+++++||++|++|+|++++..+.++.++.+.+++.+++ +.+.++++.+++
T Consensus 61 ~~alAA~~i~~~i~~~-~~~~-~~gl~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~ 138 (478)
T PRK10189 61 KEAMAGVGLADSFNMV-IMAF-FAAIDLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVA 138 (478)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3455667777777554 4555 789999999999999999999999999999999999999998887 778899999884
Q ss_pred --CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhcc----CCccchhHHH
Q 014444 81 --QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS----GLGNLGGALA 154 (424)
Q Consensus 81 --~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~----~~g~~g~ala 154 (424)
.|+|+.+.+.+|+++..++.|+..+...+.+++|+.|+++.+++.++...++|+++|++++++. ++|+.|+++|
T Consensus 139 ~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~A 218 (478)
T PRK10189 139 GDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLG 218 (478)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999864 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccc--cccccCC-CchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHH
Q 014444 155 IGISNWLNVTFLAIYMKFSTA--CAESRVP-ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSV 231 (424)
Q Consensus 155 ~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa 231 (424)
+.+++.+..++..++++++++ .+.+.++ .++.+++.+|++++.+.|..++.............+++++|++ ++|+
T Consensus 219 t~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa 296 (478)
T PRK10189 219 LTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTS--VIAG 296 (478)
T ss_pred HHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHH
Confidence 999999999887776654321 1111111 2223567899999999999999888887777777788889975 5699
Q ss_pred HHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHH
Q 014444 232 LSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDY 311 (424)
Q Consensus 232 ~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 311 (424)
++++.++.++.+++..|++++.+++++|++|+||+|++|+..+.+..+++.++..++++++++++++.++|++|+|+.+.
T Consensus 297 ~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~ 376 (478)
T PRK10189 297 NFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHV 376 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHH
Q 014444 312 VTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLG 391 (424)
Q Consensus 312 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~ 391 (424)
+..++++.+...++++.+....+.+||.||++.+++.++++.|++.+|+.|++.+..++|+.|+|++..+++.+..++..
T Consensus 377 ~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~ 456 (478)
T PRK10189 377 VKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFY 456 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877789999999999999999999999
Q ss_pred HHHHhccHHHH
Q 014444 392 IITTCTNWEKQ 402 (424)
Q Consensus 392 ~~~~~~~~~~~ 402 (424)
+++++++|+++
T Consensus 457 ~r~~~~~W~~~ 467 (478)
T PRK10189 457 WRMVSGRWLWK 467 (478)
T ss_pred HHHHcCccccC
Confidence 99999999983
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.5e-48 Score=377.92 Aligned_cols=390 Identities=21% Similarity=0.275 Sum_probs=349.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCh
Q 014444 4 KCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP 83 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 83 (424)
..+-++++..+.++. ..+ ..|++.|.++++||++|++|+|++++..+.++.+..+++++..++..+.+|+++.++.|+
T Consensus 44 alAa~~i~~~i~~~~-~~~-~~gl~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ 121 (464)
T PRK00187 44 ALAGGGLGAASYSFV-SIF-CVGVIAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAP 121 (464)
T ss_pred HHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 345567777776664 444 689999999999999999999999999999999999999988777556799999999999
Q ss_pred hHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhcc----CCccchhHHHHHHHH
Q 014444 84 QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS----GLGNLGGALAIGISN 159 (424)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~----~~g~~g~ala~~i~~ 159 (424)
|+.+.+.+|+++..++.|+..+...+++++|+.|+++++++.+++..++|+++|++|+++. ++|+.|+++||.+++
T Consensus 122 ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~ 201 (464)
T PRK00187 122 QNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVS 201 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999873 699999999999999
Q ss_pred HHHHHHHHHHHHhccccccc--cCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 014444 160 WLNVTFLAIYMKFSTACAES--RVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLN 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~ 237 (424)
....+.+.++++++++.++. +.+..+.+++..|++++.++|..+++..+......+..+++++|++ ++|+++++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~ 279 (464)
T PRK00187 202 NGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQ 279 (464)
T ss_pred HHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHH
Confidence 98888777777654432111 1122234567899999999999999999999999999999999975 5599999999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCC--cH---HHHHHH
Q 014444 238 TIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN--EK---QVVDYV 312 (424)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~ 312 (424)
+..+.+.+..+++++.+++++|++|+||+|++++..+.+..+++..+++++++.+++++++.++|++ |+ |+.+.+
T Consensus 280 i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~ 359 (464)
T PRK00187 280 IVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLA 359 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999964 44 788999
Q ss_pred HHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHH
Q 014444 313 TTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGI 392 (424)
Q Consensus 313 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~ 392 (424)
..++++.+++.++++++....+++||.||++.+++.++++.|++++|+.|++.+.+++|+.|+|+++.+++.+..+....
T Consensus 360 ~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~ 439 (464)
T PRK00187 360 VSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTL 439 (464)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999887766
Q ss_pred HHHhc
Q 014444 393 ITTCT 397 (424)
Q Consensus 393 ~~~~~ 397 (424)
+++++
T Consensus 440 ~~~~~ 444 (464)
T PRK00187 440 AFEWK 444 (464)
T ss_pred HHHHH
Confidence 66433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=3.7e-46 Score=363.77 Aligned_cols=393 Identities=20% Similarity=0.322 Sum_probs=354.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCh
Q 014444 5 CFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDP 83 (424)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 83 (424)
.+-+.+++.+... ...+ ..|++.|.++.+||++|++|+|++++..+.++.+..+.+++.+++ +.+.+++..+++.|+
T Consensus 47 laa~~~~~~~~~~-~~~~-~~g~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 124 (456)
T PRK01766 47 LAAVAIGTSIWLP-VILF-GHGLLLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEP 124 (456)
T ss_pred HHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCH
Confidence 3445555554333 3444 789999999999999999999999999999999999999988886 777899999999999
Q ss_pred hHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc----cCCccchhHHHHHHHH
Q 014444 84 QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK----SGLGNLGGALAIGISN 159 (424)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~----~~~g~~g~ala~~i~~ 159 (424)
|+.+.+.+|+++..++.|+..+...+++++|+.|+++++++.+++..++|++++++++++ +++|+.|++++|.+++
T Consensus 125 ~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~ 204 (456)
T PRK01766 125 EVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVY 204 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999975 3689999999999999
Q ss_pred HHHHHHHHHHHHhccccc--cccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 014444 160 WLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLN 237 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~ 237 (424)
++..++..++.+++++.+ +.+.+..+++++..|++++.++|..+++..+...+..+..+++++|++ ++|+++++.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~ 282 (456)
T PRK01766 205 WVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALN 282 (456)
T ss_pred HHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHH
Confidence 999999988887655321 111222234567789999999999999999988888899999999975 4599999999
Q ss_pred hhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhH
Q 014444 238 TIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAP 317 (424)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 317 (424)
+.++.+.+..+++.+.++.++|++|+||++++++..+.+..+++.++++.++.++.+++++.++|++|||+.+.+..+++
T Consensus 283 i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~ 362 (456)
T PRK01766 283 FSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLL 362 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhc
Q 014444 318 LVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 397 (424)
Q Consensus 318 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 397 (424)
+..+..++++++....+++||.||++.+++.++++.|++++|..|++.+.+++|..|+|+++.+++.+..++..+++++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~ 442 (456)
T PRK01766 363 FAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL 442 (456)
T ss_pred HHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888889999999999999999999998888877
Q ss_pred cHHH
Q 014444 398 NWEK 401 (424)
Q Consensus 398 ~~~~ 401 (424)
+|+.
T Consensus 443 ~~~~ 446 (456)
T PRK01766 443 QRQP 446 (456)
T ss_pred HHHH
Confidence 6654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.9e-46 Score=364.16 Aligned_cols=388 Identities=12% Similarity=0.082 Sum_probs=345.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ 81 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 81 (424)
+..+-++.++.+.++. ..+ ..|++.|.++++||++|+||+|++++.++.++.+..+.+++..++ +.+.++++.+++.
T Consensus 46 ~~laa~~~~~~~~~~~-~~~-~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~ 123 (453)
T PRK09575 46 EGLAGINMAWPVIGII-LGI-GLMVGMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGA 123 (453)
T ss_pred HHHHHHHHHHHHHHHH-HHH-HHHHhccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445566666666653 344 689999999999999999999999999999999999999998887 8889999999999
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWL 161 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~ 161 (424)
|+|+.+.+.+|+++..++.|+..+.....+.+|+.|+.+.++..++...++|+.+|+++++++++|+.|+++|+++++.+
T Consensus 124 ~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~ 203 (453)
T PRK09575 124 EGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLV 203 (453)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHH
Q 014444 162 NVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQT 241 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~ 241 (424)
..++.++++++++...+.+.+..+.+++..|++++++.|..++.............+.+++|+++ ++|+++++.++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~-~lAa~~i~~~i~~~ 282 (453)
T PRK09575 204 VTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSAL-TVGAYAIVGYLMVL 282 (453)
T ss_pred HHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHH
Confidence 99998888775543222111222345678899999999999999988888888888888888643 56999999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCC-cHHHHHHHHHHhHHHH
Q 014444 242 LYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN-EKQVVDYVTTMAPLVC 320 (424)
Q Consensus 242 ~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~ 320 (424)
.+.+..|++.+.+|.+||++|+||+|++++..+.++.+++..+++.+++++.+++++.++|++ |||+.+.+.+++++.+
T Consensus 283 ~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~ 362 (453)
T PRK09575 283 YYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHL 362 (453)
T ss_pred HHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999995 7899999999999999
Q ss_pred HHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 321 LSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
++.++++++....+.+||.||++.++..+.... .+++|..|++. +.+|+.|+|+++.+++.+..++...++++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~--~~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 363 FAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILP--KWLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHH--HHHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998764 78999999987 34799999999999999988888766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=9.1e-46 Score=356.77 Aligned_cols=384 Identities=13% Similarity=0.073 Sum_probs=330.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCh
Q 014444 5 CFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDP 83 (424)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 83 (424)
.+=.+++..+.+.. ..+ ..|++.|+++++||++|+||+|++++..++++.+..+.+++..++ ..+.++++.+++.|+
T Consensus 45 lAa~~l~~~i~~~~-~~~-~~~~~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~ 122 (441)
T PRK10367 45 LGGVAVGATATSFL-FML-LLFLRMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSE 122 (441)
T ss_pred HHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 44556666666554 444 689999999999999999999999999999999999999988877 778899999999999
Q ss_pred hHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHH
Q 014444 84 QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNV 163 (424)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~ 163 (424)
|+.+.+.+|+++..++.|+..+..++.+++|+.|+++++++.+++..++|+++|+++++++++|+.|+++||.+++.+..
T Consensus 123 ~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~ 202 (441)
T PRK10367 123 AVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATL 202 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccccccCCCchHh-HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHH
Q 014444 164 TFLAIYMKFSTACAESRVPISMEL-FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL 242 (424)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~ 242 (424)
++..++++++++.++.+.+..+++ ++.+|++++.+.|..+++......+.....+++++|++ ++|+|+++.++.++.
T Consensus 203 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~ 280 (441)
T PRK10367 203 LIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFT 280 (441)
T ss_pred HHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHH
Confidence 888777765432211111111222 24689999999999999999999999999999999975 569999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHH
Q 014444 243 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS 322 (424)
Q Consensus 243 ~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 322 (424)
+++..|++++.+|.++|++|+||+|++|+..+.+.++++..+.+++++++.+++++.++|++|+|+.+.+..++++.+..
T Consensus 281 ~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~ 360 (441)
T PRK10367 281 AYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVIL 360 (441)
T ss_pred HHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HHHHhHHHh----HhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhcc
Q 014444 323 VIMDSLQGV----FSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTN 398 (424)
Q Consensus 323 ~~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 398 (424)
.+....... ..+.+||. |++.+++.++++.|+..+ .. +++|..|+|++..+++.+..++..++++++
T Consensus 361 ~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~~~~-----~~--~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~- 431 (441)
T PRK10367 361 PLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFALTLL-----TL--PWLGNHGLWLALTVFLALRGLSLAAIWRRH- 431 (441)
T ss_pred HHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHH-----HH--HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 443323333 44555554 699999999998764222 22 357999999999999999999988776654
Q ss_pred HHH
Q 014444 399 WEK 401 (424)
Q Consensus 399 ~~~ 401 (424)
|+|
T Consensus 432 ~~~ 434 (441)
T PRK10367 432 WRN 434 (441)
T ss_pred Hhc
Confidence 755
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=4.1e-34 Score=283.05 Aligned_cols=383 Identities=12% Similarity=0.055 Sum_probs=319.1
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHh
Q 014444 3 LKC-FLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFP-LSFL-WIYAGKLLVLI 79 (424)
Q Consensus 3 ~~~-~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i~~~~ 79 (424)
+.. ..|.+++++++.........|++++..+...++.+++ |++++.+.+++....+.+.+ .+++ +.+++++..++
T Consensus 34 ~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 111 (502)
T TIGR01695 34 GLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLL 111 (502)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445 5888998888776555413678888777776654322 57777777777666655544 4555 77788888877
Q ss_pred --CCChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhH--HHH
Q 014444 80 --GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGA--LAI 155 (424)
Q Consensus 80 --~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~a--la~ 155 (424)
+.++|..+.+.+|++++.++.|+..+.+..++++|++++.+++++.++..++++++...++ ..++|..|++ +++
T Consensus 112 ~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~ 189 (502)
T TIGR01695 112 APGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGV 189 (502)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHH
Confidence 5677888999999999999999999999999999999999999999999888876643333 3568999988 999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 014444 156 GISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVC 235 (424)
Q Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~ 235 (424)
++++.+..++.+++.+|++... +.++ +.+++..|++++++.|..+++.........|..+.+.++++ ++++|+.+
T Consensus 190 ~i~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~--~v~~~~~a 264 (502)
T TIGR01695 190 LIGGVAQLLIQLPFLRKAGFLL--KPRF-NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIG--SVSALYYA 264 (502)
T ss_pred HHHHHHHHHHHHHHHHHCCCcc--cCcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHH
Confidence 9999999998887776654211 1111 12345789999999999999999999999999888777765 45889999
Q ss_pred HHhhHHHHH-hhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCC----cHHHHH
Q 014444 236 LNTIQTLYA-IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN----EKQVVD 310 (424)
Q Consensus 236 ~~~~~~~~~-~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~ 310 (424)
.++.++... +..+++++..|.+++++|+||+|++++..+++.++...++.++++.++.+++++.+++.+ |+|..+
T Consensus 265 ~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~ 344 (502)
T TIGR01695 265 NRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTV 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 999988765 568999999999999999999999999999999999999999999999999999988865 567788
Q ss_pred HHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHH
Q 014444 311 YVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLL 390 (424)
Q Consensus 311 ~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~ 390 (424)
.+..++++++++.++.+++......+++.||+|.+++.+..+. ++++++++++. +.+|..|+|+++.+++.+..++.
T Consensus 345 ~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~ 421 (502)
T TIGR01695 345 MTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLI--FPLGLVGIALATSAASMVSSVLL 421 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999987 78999999987 56899999999999999999988
Q ss_pred HHHHHhc
Q 014444 391 GIITTCT 397 (424)
Q Consensus 391 ~~~~~~~ 397 (424)
.++.+|+
T Consensus 422 ~~~~~~~ 428 (502)
T TIGR01695 422 YLMLNRR 428 (502)
T ss_pred HHHHHHh
Confidence 7777765
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=2.8e-34 Score=283.26 Aligned_cols=386 Identities=13% Similarity=0.100 Sum_probs=322.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG 80 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 80 (424)
+|++..+..++++.++..... ..|++.+..+.+||+.|++|+++.++.+++++++..+.+++.+++ +.+.+++..+++
T Consensus 32 ~~~~G~~~~~~~~~~~~~~~~-~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~ 110 (488)
T TIGR02900 32 AEGVGLYGMAMPIYFLFITLT-TGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLL 110 (488)
T ss_pred HHHhhHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc
Confidence 567888999999888876666 789999999999999999999999999999999999999998886 777888877666
Q ss_pred CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc-----cCCccchhHHHH
Q 014444 81 QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-----SGLGNLGGALAI 155 (424)
Q Consensus 81 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~-----~~~g~~g~ala~ 155 (424)
.+++.. .++++..+..|+..+.+..++.+|++++.++.+..++++.++|+.++..++.. .+.|+.|+++++
T Consensus 111 ~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 186 (488)
T TIGR02900 111 KDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSL 186 (488)
T ss_pred CChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 665432 56888899999999999999999999999999999999999998887666542 356788999999
Q ss_pred HHHHHHHHHHHHHHHHhccccc--cccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCh-----hhh
Q 014444 156 GISNWLNVTFLAIYMKFSTACA--ESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNP-----QLE 228 (424)
Q Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 228 (424)
.+++.+..+...++.+|+++.+ ..+.+..+.+++.+|++++++.|..+++.........|..++++...+ ..+
T Consensus 187 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a 266 (488)
T TIGR02900 187 VLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREA 266 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 9999999998877765544321 111122234567889999999999999999999999998877643210 111
Q ss_pred HHHH----HHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCC
Q 014444 229 TSVL----SVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN 304 (424)
Q Consensus 229 ~aa~----~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 304 (424)
.+.+ +++.++.++...+..+++.+..|.++++.|+||+|+.++..++..++....+.+..+.+..+++++..++.+
T Consensus 267 ~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 346 (488)
T TIGR02900 267 TSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYG 346 (488)
T ss_pred HHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1222 355667777777788999999999999999999999999999999999999999999999999999988876
Q ss_pred cHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHH
Q 014444 305 EKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAF 384 (424)
Q Consensus 305 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~ 384 (424)
+++ +..++++.++..++..++....+.+++.||+|.+++.+..+. ++++++++.+...|.+|..|+|+++.+++.
T Consensus 347 ~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~ 421 (488)
T TIGR02900 347 RPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAITFIITSV 421 (488)
T ss_pred CCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 543 457899999999999999999999999999999999999987 789999888875578899999999999999
Q ss_pred HHHHHHHHHHHhc
Q 014444 385 TQTLLLGIITTCT 397 (424)
Q Consensus 385 ~~~~~~~~~~~~~ 397 (424)
+..++..+..+|.
T Consensus 422 ~~~~~~~~~~~~~ 434 (488)
T TIGR02900 422 LVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
No 9
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=281.72 Aligned_cols=411 Identities=43% Similarity=0.747 Sum_probs=388.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCC
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQD 82 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (424)
.+-+-.+++++..|.+.+++ ..|+..+..++++|.+|+++++....+...+.......+++.+.++.+.+|++..+++|
T Consensus 61 leLaa~sla~s~~n~~~~s~-~~gl~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~ 139 (473)
T KOG1347|consen 61 LELASVSLANSFANITGVSI-LLGLQLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQD 139 (473)
T ss_pred hHHHHHHHHHHhhcccchHH-hhccchhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCC
Confidence 34456788999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHH
Q 014444 83 PQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLN 162 (424)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~ 162 (424)
+++...+..|.+...+..+.+.....+..+++++++..+..+......++|+.+++++++..++|..|++++..+++...
T Consensus 140 ~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~ 219 (473)
T KOG1347|consen 140 PDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLN 219 (473)
T ss_pred hhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHH
Q 014444 163 VTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL 242 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~ 242 (424)
...+..|..... +.+.|..++.+ ++.+++++++++|..+...++.+.+....+..|.++++...+++.++..++....
T Consensus 220 ~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~ 297 (473)
T KOG1347|consen 220 VRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWH 297 (473)
T ss_pred HHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 999999987665 44555566666 8899999999999999999999999999999999999888889999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHH
Q 014444 243 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLS 322 (424)
Q Consensus 243 ~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~ 322 (424)
+++..+++.+.++++++.+|++|++++|.....+...++..+...+...+..++.+.++|++|+|+.+...+..++.+..
T Consensus 298 ~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~ 377 (473)
T KOG1347|consen 298 LMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALS 377 (473)
T ss_pred HHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhccHHHH
Q 014444 323 VIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQ 402 (424)
Q Consensus 323 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 402 (424)
.+.++.+....+..+|.|+++...++++...+++++|....+.+..++|..|.|.++..+..+..........+.+|+++
T Consensus 378 ~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~ 457 (473)
T KOG1347|consen 378 ILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQ 457 (473)
T ss_pred HHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999988888888888999999999
Q ss_pred HHHHHHHhhcCCCC
Q 014444 403 ASKARERISKGRSL 416 (424)
Q Consensus 403 ~~~~~~~~~~~~~~ 416 (424)
..+.+++......+
T Consensus 458 ~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 458 AEKAFARIIASLVL 471 (473)
T ss_pred HHHHHHHHHhhccC
Confidence 99998887665543
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1.9e-33 Score=264.64 Aligned_cols=313 Identities=23% Similarity=0.388 Sum_probs=279.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ 81 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 81 (424)
+...-|++++.+.+. ...+ ..|++++..+.++|+.|++|+|+.++..+.++.+..+++++.+++ +.+.+++..+++.
T Consensus 26 ~~~~~~~~a~~i~~~-~~~~-~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (342)
T TIGR00797 26 VDLAAVSLGSSVFMF-LFSI-LMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGA 103 (342)
T ss_pred HHHHHHHHhHHHHHH-HHHH-HHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence 456678888766554 4445 789999999999999999999999999999999999999999887 8889999998888
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhh-ccC-CccchhHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY-KSG-LGNLGGALAIGISN 159 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~-~~~-~g~~g~ala~~i~~ 159 (424)
+++..+.+.+|++++.++.|+..+.....+.+|+.++.++....++.+.++|+.++++++. .++ +|+.|+++++.+++
T Consensus 104 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~ 183 (342)
T TIGR00797 104 DGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISY 183 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999987 567 88999999999999
Q ss_pred HHHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhh
Q 014444 160 WLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTI 239 (424)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~ 239 (424)
++..++..++.+|+++.+.++++..+.+++..|++++++.|..++++...+....+..+.+.+|++ ++++|+++.++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~--~v~~~~~a~~~~ 261 (342)
T TIGR00797 184 WLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSI--ALAAHQIALNVE 261 (342)
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHH
Confidence 999999888877644332222222234567889999999999999999999999999999888864 558999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHH
Q 014444 240 QTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLV 319 (424)
Q Consensus 240 ~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 319 (424)
++...+..+++++..|.+++++|+||+|+.++..+++.++.+.++.+....++++++++.++|++|||+.+.+..++++.
T Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 262 SLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=3.1e-32 Score=262.72 Aligned_cols=374 Identities=10% Similarity=-0.029 Sum_probs=311.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG 80 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 80 (424)
++.+.+++..+++........ ..|++++.++.++|+ ++|+|+.++++++++.+....+++.+++ +.+.+|+..+++
T Consensus 34 ~~~~G~~~~~~~~i~~~~~~~-~~G~~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~ 110 (416)
T PRK15099 34 PAGVGQAGNFRQLITVLGVLA-GAGIFNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLF 110 (416)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-cCCccceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456777788888888777776 889999999999998 7788999999999999999999998887 888899998887
Q ss_pred CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHH
Q 014444 81 QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNW 160 (424)
Q Consensus 81 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~ 160 (424)
.+++. ..+.++..+..+...+.+...+.+|+.++.+.++...+.+.++|+.+ +++.+.. .|+.|+++|+++++.
T Consensus 111 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~ 184 (416)
T PRK15099 111 GHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPA 184 (416)
T ss_pred CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHH
Confidence 77653 24566667777777888999999999999999999999999999877 4444432 399999999999999
Q ss_pred HHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-cCCChhhhHHHHHHHHHhh
Q 014444 161 LNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSG-LLPNPQLETSVLSVCLNTI 239 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~i~~~~~ 239 (424)
+..+...++++|+++.+.++.+. +.+++..|++++++.|..+++....+....++.+++ ++|++ ++++|+.+.++.
T Consensus 185 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~--~vg~y~~a~~i~ 261 (416)
T PRK15099 185 LVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWD--EVGIWQGVSSIS 261 (416)
T ss_pred HHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH--HhhHHHHHHHHH
Confidence 99888777776654322111122 234667899999999999999998888888888885 77754 569999999997
Q ss_pred HH-HHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHH
Q 014444 240 QT-LYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPL 318 (424)
Q Consensus 240 ~~-~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i 318 (424)
+. ...+..+++++..|.++++ +|.|+.++..++..........+.+..++++++++.+++.+|+ .+.+.+++++
T Consensus 262 ~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~ 336 (416)
T PRK15099 262 DAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAW 336 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 75 4788899999999999995 7889999999999999999999999999999999999998765 4456779999
Q ss_pred HHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHH
Q 014444 319 VCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 395 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 395 (424)
.+++.++...+.......-+.++++......+... ++++++++++. +.+|..|++++..+++.+..+.......
T Consensus 337 l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 337 QLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888877777778888888777777764 78999999988 7789999999999999999988776555
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=4.5e-30 Score=248.07 Aligned_cols=384 Identities=15% Similarity=0.118 Sum_probs=335.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHh--
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLI-- 79 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-- 79 (424)
++..-|..+++++++..-.+...++..+..|..++.. ++|+|+.++..+..+....+.+++++++ +++++++.+.+
T Consensus 9 ~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~ 87 (451)
T PF03023_consen 9 AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAP 87 (451)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4567899999999998766623568999999999998 8889999999999999999888888887 88899999887
Q ss_pred CCChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCc---cchhHHHHH
Q 014444 80 GQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLG---NLGGALAIG 156 (424)
Q Consensus 80 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g---~~g~ala~~ 156 (424)
+.++|..+.+.++++++.+..++..+..++.++++++++...+...+++.++..+....++. ...| +.+.++|.+
T Consensus 88 g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~~~i~~la~g~~ 165 (451)
T PF03023_consen 88 GFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQENIYALAWGVL 165 (451)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCchHHHHHHHHHH
Confidence 66788999999999999999999999999999999999999998888887777554333333 2355 888999999
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 014444 157 ISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCL 236 (424)
Q Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~ 236 (424)
++..+..+..+...+|.+...+...+.+ .+..|++++...|..+.....+....++..+.+.++++ ++++.+.+.
T Consensus 166 ~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~ 240 (451)
T PF03023_consen 166 IGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQ 240 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHH
Confidence 9999999999888887664322222222 23588999999999999999999999999999998865 569999999
Q ss_pred HhhHHHHHh-hhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccC----CcHHHHHH
Q 014444 237 NTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS----NEKQVVDY 311 (424)
Q Consensus 237 ~~~~~~~~~-~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~ 311 (424)
++.++...+ ..+++++..|..+++..+||.++.++..+++++..+.+.+|.++.++.+++++.++.. -|+|..+.
T Consensus 241 ~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ 320 (451)
T PF03023_consen 241 RLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQL 320 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHH
Confidence 999998755 5799999999999999999999999999999999999999999999999999997764 26777888
Q ss_pred HHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHH
Q 014444 312 VTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLG 391 (424)
Q Consensus 312 ~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~ 391 (424)
...++++++++.++.+++..+...+++.||+|.++..+.++. ++++.+++.+. +.+|..|+++++.++..+.+++..
T Consensus 321 ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~--~~~g~~Glala~sl~~~i~~~~l~ 397 (451)
T PF03023_consen 321 TASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLV--PFFGVAGLALATSLSAIISALLLY 397 (451)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 88999998887 778999999999999999999998
Q ss_pred HHHHhc
Q 014444 392 IITTCT 397 (424)
Q Consensus 392 ~~~~~~ 397 (424)
..++|+
T Consensus 398 ~~l~r~ 403 (451)
T PF03023_consen 398 ILLRRR 403 (451)
T ss_pred HHHHHH
Confidence 888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=2.6e-26 Score=218.19 Aligned_cols=385 Identities=14% Similarity=0.051 Sum_probs=326.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC---
Q 014444 6 FLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ--- 81 (424)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--- 81 (424)
.-|+.|..++|.+--.+....++++..+...++..++++|+.++..+........+.+.++++ .++.+++.+....
T Consensus 45 DAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~ 124 (518)
T COG0728 45 DAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGF 124 (518)
T ss_pred HHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 468999999999998885666799999999999888777777777777777888888888887 7777777755522
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWL 161 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~ 161 (424)
+++....+....+++.|.+++..+.....+++++.++..++.+.+++.++.-+.....+....+.-..+.+++++++.+.
T Consensus 125 ~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~ 204 (518)
T COG0728 125 DETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLL 204 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 23333367788899999999999999999999999999999998888888766455444443333467889999999999
Q ss_pred HHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHH
Q 014444 162 NVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQT 241 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~ 241 (424)
..++.+..++|.+...+.++.++. +..|++.+...|..++....++...+|+.+.+.+.++ +++.+..+.++.++
T Consensus 205 Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~ql 279 (518)
T COG0728 205 QLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQL 279 (518)
T ss_pred HHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHh
Confidence 999999999887743333333321 4689999999999999999999999999999999765 55889999999999
Q ss_pred HHH-hhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCC----cHHHHHHHHHHh
Q 014444 242 LYA-IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSN----EKQVVDYVTTMA 316 (424)
Q Consensus 242 ~~~-~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l 316 (424)
... +..++++...|..|++..++|.++.++..+++++..++.++|.++.+..+++|+..+... +++........+
T Consensus 280 PlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L 359 (518)
T COG0728 280 PLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEAL 359 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 875 558999999999999999999999999999999999999999999999999999976632 466677888999
Q ss_pred HHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 317 PLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 317 ~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
..+.++.++..+..++...+++.+|+|.|+++++++. ++++.++..+. +.+|..|.+.+..++..+.+.+.++..+|
T Consensus 360 ~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k 436 (518)
T COG0728 360 AAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRK 436 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997 89999996665 77899999999999999988888887777
Q ss_pred cc
Q 014444 397 TN 398 (424)
Q Consensus 397 ~~ 398 (424)
+.
T Consensus 437 ~~ 438 (518)
T COG0728 437 RL 438 (518)
T ss_pred hc
Confidence 53
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=1.2e-22 Score=200.59 Aligned_cols=365 Identities=11% Similarity=0.056 Sum_probs=283.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG 80 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 80 (424)
+|++-++.+++++..+..... ..|++.+..+ . .++|+ +..++..++....+++..++ +.+++++..+++
T Consensus 38 p~~~G~~~~~~~~~~~~~~~~-~~Gl~~aii~----~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 107 (492)
T PRK10459 38 NHQFGLLTMSLVIIGFADTLS-DMGIGASIIQ----R-QDISH----LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH 107 (492)
T ss_pred HHHccHHHHHHHHHHHHHHHH-HcCHHHHHHh----c-ccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467778999999999877777 8888887643 2 11122 34456666777777777666 666666666554
Q ss_pred CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHH
Q 014444 81 QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNW 160 (424)
Q Consensus 81 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~ 160 (424)
.+ +. ...+++..+..++..+.....+.++++++.+.....++...++..++...+.. .+.|..+.+++.++++.
T Consensus 108 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~ 181 (492)
T PRK10459 108 NP-EL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSS 181 (492)
T ss_pred Ch-hh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHH
Confidence 43 32 24577778888888888889999999888888877788777777666655443 47889999999999998
Q ss_pred HHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhH
Q 014444 161 LNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQ 240 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~ 240 (424)
+..+...+..++ +.. + +.++ +++..|++++++.|...++.........|.++++...+.+ +++.|+.+.++.+
T Consensus 182 ~~~l~~~~~~~~-~~~-~-~~~~---~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~-~vG~Y~~A~~l~~ 254 (492)
T PRK10459 182 VRTLLFGYFGRK-IYR-P-ALHF---SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAE-VLGGYNLAYNVAT 254 (492)
T ss_pred HHHHHHHHHhcc-cCC-c-ccee---cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchH-hhhhHHHHHHHHH
Confidence 877655433322 211 1 1111 2456899999999999999999999999999877765543 5688999999988
Q ss_pred HHHH-hhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHH
Q 014444 241 TLYA-IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLV 319 (424)
Q Consensus 241 ~~~~-~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 319 (424)
.... +...++....|..++. ++|.++.++..++..+.....++|+.+.+.+.++++..++.+|+ .+.+...++++
T Consensus 255 ~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il 330 (492)
T PRK10459 255 VPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLL 330 (492)
T ss_pred HHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHH
Confidence 7654 4456788899999886 67899999999999999999999999999999999987776544 56688999999
Q ss_pred HHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 320 CLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
++..++..........+++.||+|..+..+++.. ++.+|..+.+. +.+|..|+++++.+++.+......++..|
T Consensus 331 ~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 331 CIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887 77788777766 56799999999999999988888776633
No 15
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.93 E-value=1.7e-24 Score=209.12 Aligned_cols=210 Identities=19% Similarity=0.189 Sum_probs=199.7
Q ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCCh
Q 014444 187 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 266 (424)
Q Consensus 187 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~ 266 (424)
.++..|+++++++|..++++.+.....+|++++|+++.+ ++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~--alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAE--ALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 345789999999999999999999999999999999954 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 267 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
+++++..+++...+++++++..++.+.+++++..+++.++|+.+.+.+|+++..++.|+..++....+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-cC-CCcchhHHHHHHhHHHHHHHHHHHHHhccH
Q 014444 347 FVNLGAFYLCGIPTAAILGFW-LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTNW 399 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 399 (424)
+.++++. +.|+.++|++++. .+ +|+.|+++|+.+++.+.++....+++|++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999998 8999999999987 45 999999999999999999999998887763
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.93 E-value=1e-23 Score=203.62 Aligned_cols=207 Identities=12% Similarity=0.058 Sum_probs=192.9
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChH
Q 014444 188 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 267 (424)
Q Consensus 188 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~ 267 (424)
+++.|+++++++|..+++........+|+.+++++++++ ++|+.+++.++.++...+..+++.+..+.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~-alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPV-YLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 356789999999999999999999999999999985433 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHH
Q 014444 268 KARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAF 347 (424)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 347 (424)
++++..++++..+++.+++.......+.+++..+++.|+|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 348 VNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 348 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
.++++. +++++++|++++.+++|+.|+++|+.+++.+.+++...++++
T Consensus 164 ~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997 889999999998889999999999999999988887666654
No 17
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.92 E-value=2.3e-23 Score=202.93 Aligned_cols=207 Identities=16% Similarity=0.064 Sum_probs=189.6
Q ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCCh
Q 014444 187 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 266 (424)
Q Consensus 187 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~ 266 (424)
++++.|++++.++|..++++.+......|..+++++|++ ++|+++++.++..+...+..+++++..+.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~--alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPE--ALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 346789999999999999999999999999999999865 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 267 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
|++++..+.+..+++.++++..+..+ +.+++.++++.|||+.+.+.+|+++..++.++..+....++++|+.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877766 56889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchhHHHHHHhHHHHHHHHHHHHHhc
Q 014444 347 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCT 397 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 397 (424)
+.++++. +++++++|++++. |++|+.|+++|+.+++.+..+....+++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999997 7899999998864 468999999999999988877766666543
No 18
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.92 E-value=1e-21 Score=193.39 Aligned_cols=355 Identities=15% Similarity=0.149 Sum_probs=276.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQ-TYTAIFCLFLVCFPLSFLWIYAGKLLVLIG 80 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (424)
+|++-+|..++++..++.... ..|++.+.++.++++.+++|+...... ...........+.+.........+.
T Consensus 39 ~~~~G~~~~~~~~~~~~~~i~-~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 112 (480)
T COG2244 39 PEGFGLYALALAIIGLFSILA-DFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI----- 112 (480)
T ss_pred cccceeeehHHHHHHHHHHHH-HcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 577888999999999988888 999999999999999877666665555 5555555555555544443333222
Q ss_pred CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHH
Q 014444 81 QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNW 160 (424)
Q Consensus 81 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~ 160 (424)
++ .....++...+..+........++.+|+.++.++.... .+....-......+.. .......++...+..
T Consensus 113 -~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 183 (480)
T COG2244 113 -DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS-IVSSIFLLAAVFALLF---AALGLAVWALVLGAV 183 (480)
T ss_pred -Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHH
Confidence 12 22344778899999999999999999999999998886 4333111111111111 344566666666666
Q ss_pred HHHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhH
Q 014444 161 LNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQ 240 (424)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~ 240 (424)
........+..++++...+ ... +..++..|++++.+.|..+.+.........|.++.++.-+++ .++.|+.+.++..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~-~vG~Y~~a~~i~~ 260 (480)
T COG2244 184 VSLLVLLILLGKKKRGLKR-PIL-RFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPA-QVGIYSAAQRLVS 260 (480)
T ss_pred HHHHHHHHHHHHhhhhccc-ccc-CchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-HheecccccHHHH
Confidence 6666665555422221111 111 113567899999999999999999999999999888765543 5578999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHH
Q 014444 241 TLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVC 320 (424)
Q Consensus 241 ~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~ 320 (424)
....+..+++.+..|.+++...++|.++.++..++..++...++.|..+.+..+++++..++.+++ ...+...+++.+
T Consensus 261 ~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~ 338 (480)
T COG2244 261 LLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLA 338 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887776554 223778999999
Q ss_pred HHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHH
Q 014444 321 LSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGI 379 (424)
Q Consensus 321 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~ 379 (424)
++.++..........+++.|+++..++.+.++. +.++.++++++ +.+|..|++.+.
T Consensus 339 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a~ 394 (480)
T COG2244 339 LAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLI--PRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHHH
Confidence 999999999999999999999999999999997 78888999988 778999999988
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.92 E-value=5.3e-23 Score=200.57 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=190.3
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHH
Q 014444 189 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQK 268 (424)
Q Consensus 189 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~ 268 (424)
+..|+++++++|..+++........+|..+++++|++ ++|++++++++..+.+.+..+++++.++.+||++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~--alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKE--AMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4589999999999999999999999999999999875 56999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccC--CcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 269 ARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS--NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
+++..+.++.+++..+++.+++.+++++++.++++ .|+|+.+.+..|+++..++.++..+.....+++||.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 347 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
+.++++. ++++++++++++. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999875 8899999998864 48999999999999999988876655543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=3.4e-23 Score=201.45 Aligned_cols=207 Identities=14% Similarity=0.101 Sum_probs=193.7
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCCh
Q 014444 188 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLL-PNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 266 (424)
Q Consensus 188 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~ 266 (424)
++..|+++++++|..++++........|..+++++ |++ +++++++++++.++...+..+++.+.++.++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~--~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAE--GLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 45679999999999999999999999999999996 643 569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 267 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
|++++..+.+..++++++++..++.+.+++++.++++.|+|+.+.+.+|+++..++.++..+.....+.+|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhc
Q 014444 347 FVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCT 397 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 397 (424)
+.++.+. ++++++++++++.+++|+.|+++++.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999987 8999999999988889999999999999999998877766644
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.91 E-value=1.8e-22 Score=197.15 Aligned_cols=209 Identities=14% Similarity=0.123 Sum_probs=193.3
Q ss_pred hHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCCh
Q 014444 187 LFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 266 (424)
Q Consensus 187 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~ 266 (424)
.++.+|+++++++|..++++........|..+++++|++ ++++++++.++..+...+..+++.+..|.+||++|+||+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 356789999999999999999999999999999999865 458899999998888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 267 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
|++++..+.++.+.+.+++++.+.++.+++++..+++.|+|+.+.+..|+++..++.++..+...+.+.+|+.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHh----cCCCcchhHHHHHHhHHHHHHHHHHHHHhcc
Q 014444 347 FVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCTN 398 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 398 (424)
+.+.++. ++++++++++++. +++|+.|+++++.+++.+..++..++.+|++
T Consensus 165 ~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999997 7899999998753 5789999999999999999998887776543
No 22
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.81 E-value=5e-20 Score=153.83 Aligned_cols=162 Identities=22% Similarity=0.410 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 014444 200 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 279 (424)
Q Consensus 200 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~ 279 (424)
|..++++.+......+..+.+++|+++ +++++++.++.++...+..+++++..+.+||++|+||+|++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~--~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEA--LAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCC--CCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHH--HHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997654 599999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhh
Q 014444 280 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 359 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 359 (424)
...++++..+.++.+++++.++|++|+|+.+.+.+++++..++.++..+.....++++|.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 014444 360 TAAI 363 (424)
Q Consensus 360 ~~~~ 363 (424)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 23
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.81 E-value=1.1e-17 Score=157.36 Aligned_cols=194 Identities=19% Similarity=0.160 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 014444 200 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFM 279 (424)
Q Consensus 200 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~ 279 (424)
|.++++.........|..+++++|++ ++++++++.++..+...+..+++++..|.+++++|+||+|++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 77888888889999999999999854 5589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhh
Q 014444 280 AVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIP 359 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 359 (424)
.+..+++.+++.+++++++.++++.|++..+.+..+++++.++.++..++....+.+|+.||++.++..++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999987 78888
Q ss_pred HHHHHHH-hcC-CCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 360 TAAILGF-WLK-FRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 360 ~~~~l~~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
.++.+.+ ..+ +|..|+++++.+++.+..++...+.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 456 779999999999999998888776665
No 24
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.59 E-value=3.1e-12 Score=116.09 Aligned_cols=242 Identities=14% Similarity=0.182 Sum_probs=180.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQ 81 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (424)
+|++-.|.+.+++.++..... ..|++.+..+.+++...+ +++.+++.........+.+++......... ..+.
T Consensus 32 ~~~~G~~~~~~~~~~~~~~~~-~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~ 104 (273)
T PF01943_consen 32 PEEYGIYSLALSIVSLLSILA-DLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLILLIAS----FFGN 104 (273)
T ss_pred HHHhHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCC
Confidence 467888999999999887777 899999999999987433 455556666665555555444444322222 3333
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWL 161 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~ 161 (424)
++... .+........+.........+++++.++.+.....++...+...++..+++.. +.+..+...+..++..+
T Consensus 105 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 179 (273)
T PF01943_consen 105 PSLSL----ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLV 179 (273)
T ss_pred chHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHH
Confidence 43221 22222222225788889999999999999999888888888887766665544 34488999999999999
Q ss_pred HHHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHH
Q 014444 162 NVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQT 241 (424)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~ 241 (424)
..+...++.+|+.+ .+....+++..|++++.+.|..+++.........|.++++++.+.+ +++.|+++.++...
T Consensus 180 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~-~vg~Y~~a~~l~~~ 253 (273)
T PF01943_consen 180 SLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPE-AVGIYSVAYRLASA 253 (273)
T ss_pred HHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHH-HHHHHHHHHHHHHH
Confidence 98888888776543 1112222567899999999999999999999999999988877655 67899999999999
Q ss_pred HHHhhhhHHHHHHHHHHHhh
Q 014444 242 LYAIPYGLGAAVSTRVSNEL 261 (424)
Q Consensus 242 ~~~~~~~~~~a~~~~is~~~ 261 (424)
...+..++.++..|.+++.+
T Consensus 254 ~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 254 ISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999863
No 25
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.55 E-value=4.3e-13 Score=129.14 Aligned_cols=207 Identities=13% Similarity=0.094 Sum_probs=190.1
Q ss_pred HhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHH-HHhhhhHHHHHHHHHHHhhcCCCh
Q 014444 188 FQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTL-YAIPYGLGAAVSTRVSNELGAGNV 266 (424)
Q Consensus 188 ~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~-~~~~~~~~~a~~~~is~~~g~~~~ 266 (424)
+++.|++++++.|.++....+.....++..+.||+|+.++ |+.+++++..+.. +.+..+.+.+..|..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leL--aa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLEL--ASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHH--HHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 6788999999999999999999999999999999998754 8899999888874 677789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhH
Q 014444 267 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAA 346 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 346 (424)
+....+.+++.......+.+... ++...+++...++.||++...+..|.++.....+...........+|++++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999888888887 45555888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHhcc
Q 014444 347 FVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTN 398 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 398 (424)
++..... .++++++|++.+.+++|..|++++..+++.+.......+.....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 9999997 89999999999999999999999999999999999888777644
No 26
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.51 E-value=5.5e-12 Score=125.08 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC-
Q 014444 4 KCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ- 81 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~- 81 (424)
.-..|.+++.+..+....+ ..+++.+..+.+||+.|++|+++.++..+.++......+++.++. ..+++++...+..
T Consensus 257 ~v~~~~~a~~l~~~~~~~~-~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~ 335 (502)
T TIGR01695 257 SVSALYYANRIYQLPLGIF-GISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFER 335 (502)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566788888777765555 779999999999999999999999999999999999999998886 8889999988754
Q ss_pred ---ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHH
Q 014444 82 ---DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGIS 158 (424)
Q Consensus 82 ---~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~ 158 (424)
++|..+.+.+++++.+++.++..+...+.+.+++.|+.+.++..++...++|+.++++++.. +|..|+++|+.++
T Consensus 336 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~ 413 (502)
T TIGR01695 336 GAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAA 413 (502)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHH
Confidence 45778888999999999999999999999999999999999999999999999999988754 7999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 014444 159 NWLNVTFLAIYMKFS 173 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~ 173 (424)
+.+..+...++.+|+
T Consensus 414 ~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 414 SMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888777654
No 27
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.47 E-value=2.7e-12 Score=126.89 Aligned_cols=197 Identities=12% Similarity=0.159 Sum_probs=160.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhc-CCChhhhHHHHHHHHHhhHHHHHhh-hhHHHHHHHHHHHhhcCCChHHHHHH
Q 014444 195 FHFAIPSAVMICLEWWSFELLILMSGL-LPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVA 272 (424)
Q Consensus 195 ~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~i~~~~~~~~~~~~-~~~~~a~~~~is~~~g~~~~~~~~~~ 272 (424)
.|-+.|..+++.........+..+.++ +|+++ .++++.+.++..+...+. .|++++....+++..|++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~--~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEG--VGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH--hhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 456788889998888888888887776 57654 488999999988887766 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHH
Q 014444 273 VYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGA 352 (424)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 352 (424)
.+.+..+.+..+++.++..+.+++++...+.+|++.. .++++..+..++..+.......+|+.+|.+..+..+.++
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 9999999999999999999999999887766666532 467888899999999999999999999999999999888
Q ss_pred HHHhhhhHHHHHHH-----hcCCCcchhHHHHHHhHHHHHHHHHHHHHhcc
Q 014444 353 FYLCGIPTAAILGF-----WLKFRGRGLWIGIQAGAFTQTLLLGIITTCTN 398 (424)
Q Consensus 353 ~~~~~i~~~~~l~~-----~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~ 398 (424)
. ++++.....+.. ..+.+..|..+++.++..+..+....+++|++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~ 205 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKK 205 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 565555433332 23456778888888888888887766655443
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.44 E-value=5.6e-14 Score=117.15 Aligned_cols=133 Identities=18% Similarity=0.324 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCh
Q 014444 5 CFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDP 83 (424)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 83 (424)
.+-+..+..+.++... + ..|++.|.++.+||++|++|+|++++..+.++.+..+++++.+++ +.+.+++..+++.|+
T Consensus 28 ~a~~~i~~~~~~~~~~-~-~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~ 105 (162)
T PF01554_consen 28 LAAYGIASSIFSILFM-L-IFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDP 105 (162)
T ss_dssp CCHCCHHHHHHHHHHH-H-HHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTT
T ss_pred HHHHHHHHHHHHHHhh-h-cccccccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhH
Confidence 3455667777777555 4 699999999999999999999999999999999999999999997 888999999999999
Q ss_pred hHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHH-HhHHHHHHH
Q 014444 84 QISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAAL-CLHIPICWS 139 (424)
Q Consensus 84 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~ni~l~~~ 139 (424)
|+.+.+.+|+++..++.|+........+++++.|+.++..+.++... ++|+.++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 106 EVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp CCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 99999999999999999999999999999999999999999999999 999998874
No 29
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.42 E-value=1.8e-10 Score=111.90 Aligned_cols=169 Identities=15% Similarity=0.124 Sum_probs=152.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC--
Q 014444 4 KCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG-- 80 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~-- 80 (424)
.-..+.+|+.+.+...-.+ ...+++..-+.+||...+||.++.++.+++.+.....+.++.++. ..+++|+.+.+.
T Consensus 232 ~vs~l~YA~~l~~lp~~i~-~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~r 310 (451)
T PF03023_consen 232 SVSALNYAQRLYQLPLGIF-AVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFER 310 (451)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcc
Confidence 3467889999999987777 889999999999999999999999999999999999999999986 888999998763
Q ss_pred --CChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHH
Q 014444 81 --QDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGIS 158 (424)
Q Consensus 81 --~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~ 158 (424)
.++|-.+.....+++.++++|++.+...+...+.+++++|.++..++.+.++|++++.++... +|..|.++|+.++
T Consensus 311 G~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~ 388 (451)
T PF03023_consen 311 GAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLS 388 (451)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 356667788899999999999999999999999999999999999999999999999877765 8999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q 014444 159 NWLNVTFLAIYMKFSTA 175 (424)
Q Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (424)
..+..+.++++++|+..
T Consensus 389 ~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 389 AIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999888876653
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.39 E-value=1e-09 Score=98.36 Aligned_cols=231 Identities=16% Similarity=0.185 Sum_probs=163.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCC
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQD 82 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 82 (424)
|++-.|.+..++..+..... ..|+.....+ ..++|+++.++..+.......+.+++..++. ..+..+++ +
T Consensus 18 ~~~G~~~~~~s~~~~~~~~~-~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~ 87 (251)
T PF13440_consen 18 EDFGIYALIFSIVSILSIVA-SLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILA---ILIAYFFG-D 87 (251)
T ss_pred HHhHHHHHHHHHHHHHHHHH-HHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhC-C
Confidence 56778888888888877665 6777777655 2345666667776666655555444444331 11222332 3
Q ss_pred hhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHH
Q 014444 83 PQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLN 162 (424)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~ 162 (424)
++. ..++....+..+........++.++++++.+......+...+....+..++.. .+.+..+..++..++..+.
T Consensus 88 ~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 162 (251)
T PF13440_consen 88 PEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLA 162 (251)
T ss_pred hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHH
Confidence 322 23456677888889999999999999999999888888888887444433333 2347888999999998888
Q ss_pred HHHHHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-CCChhhhHHHHHHHHHhhHH
Q 014444 163 VTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQLETSVLSVCLNTIQT 241 (424)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~i~~~~~~~ 241 (424)
.++.....+++.+ . +. +.+..| .++.+.|..+.+.........|.++++. +|.+ +++.|+++.++...
T Consensus 163 ~~~~~~~~~~~~~---~--~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~--~~g~y~~a~~l~~~ 231 (251)
T PF13440_consen 163 LLISFYLLRRKLR---L--SF---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPE--AVGIYSVAQRLASL 231 (251)
T ss_pred HHHHHHHhccccC---C--Cc---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHH
Confidence 8776653332211 1 11 122224 7999999999999999999999999888 6543 55889999999998
Q ss_pred HH-HhhhhHHHHHHHHHHH
Q 014444 242 LY-AIPYGLGAAVSTRVSN 259 (424)
Q Consensus 242 ~~-~~~~~~~~a~~~~is~ 259 (424)
.. .+..++++...|.++|
T Consensus 232 ~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 232 PASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 88 8889999999999987
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.29 E-value=8.1e-09 Score=99.38 Aligned_cols=166 Identities=14% Similarity=0.176 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhC----C
Q 014444 7 LFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIG----Q 81 (424)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~ 81 (424)
-+.|+.-+.+...=.+ +.++.+..-+.+||...++|.++.++..+.++.++.++.++.++. ..+++|+.+.+. .
T Consensus 269 ~l~YA~rl~qlPlGif-gvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F 347 (518)
T COG0728 269 WLYYADRLYQLPLGIF-GVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAF 347 (518)
T ss_pred HHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4567777777766666 889999999999999999999999999999999999999999997 889999998762 2
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWL 161 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~ 161 (424)
+++-.....+.++....++|++.+...+...+.++++.|.++.+.+++.++|+++++++... +|..|.++++.++.++
T Consensus 348 ~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~ 425 (518)
T COG0728 348 TAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWV 425 (518)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHH
Confidence 44555667788999999999999999999999999999999999999999999999777765 6777899999999999
Q ss_pred HHHHHHHHHHhccc
Q 014444 162 NVTFLAIYMKFSTA 175 (424)
Q Consensus 162 ~~~~~~~~~~~~~~ 175 (424)
.+.++++..+|+..
T Consensus 426 ~~~ll~~~l~k~~~ 439 (518)
T COG0728 426 NALLLYYLLRKRLV 439 (518)
T ss_pred HHHHHHHHHHHhcC
Confidence 99998888877653
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.25 E-value=3e-10 Score=109.79 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=142.9
Q ss_pred HHHhHHHHHHHHHH-HHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHh-hhhHHHHHHHHHHHhhcCCChHHHHHHH
Q 014444 196 HFAIPSAVMICLEW-WSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAV 273 (424)
Q Consensus 196 ~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~-~~~~~~a~~~~is~~~g~~~~~~~~~~~ 273 (424)
|.+........... ..+....++...+|+++ .+.++...++..+...+ ..|++++....++|+ ++|+|+.++..
T Consensus 5 k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~--~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 5 KASLWTAASTLVKIGAGLLVVKLLAVSFGPAG--VGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH--HHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 33444444444443 33344456666777654 46677778777776665 568888888889988 68999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHH
Q 014444 274 YAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAF 353 (424)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 353 (424)
..+....+..++++++..+.+.+++...+.+|++ . ..++.+..+..++..+.....+.+|+.||++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTD-Y---QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887776665 2 24566666666677888899999999999999999999887
Q ss_pred HHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 354 YLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 354 ~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
++++.+ +++.+. ..|+.|+++++.+++.+..+....+.+|
T Consensus 157 -~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 157 -LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIR 196 (416)
T ss_pred -HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677765 443332 2399999999999999988776655554
No 33
>PRK10459 colanic acid exporter; Provisional
Probab=99.08 E-value=3.2e-07 Score=90.81 Aligned_cols=163 Identities=10% Similarity=0.014 Sum_probs=131.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC
Q 014444 3 LKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ 81 (424)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 81 (424)
+.-..|..++.+.+.....+ ...++...-+..|+. ++|+++.++.++........++++..+. ...++|++..+..
T Consensus 241 ~~vG~Y~~A~~l~~~~~~~i-~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g 317 (492)
T PRK10459 241 EVLGGYNLAYNVATVPPMKI-NPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFG 317 (492)
T ss_pred HhhhhHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 34567888888887765555 556777777888885 6788889999999999999999988876 7788999877755
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWL 161 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~ 161 (424)
++ ...+...++++++...+....+.....+++.|+.+.....+++..++++...+.+. ..+|..|+++++.+++.+
T Consensus 318 ~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~ 393 (492)
T PRK10459 318 EK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQII 393 (492)
T ss_pred hh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHH
Confidence 44 45677889999999999999999999999999999888777777777766555444 347999999999999999
Q ss_pred HHHHHHHHHHh
Q 014444 162 NVTFLAIYMKF 172 (424)
Q Consensus 162 ~~~~~~~~~~~ 172 (424)
......++.+|
T Consensus 394 ~~~~~~~~~~~ 404 (492)
T PRK10459 394 NTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHH
Confidence 98888887744
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.81 E-value=4e-06 Score=82.54 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=153.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhc--CCChhhhHHHHHHHHHhhHHH-HHhhhhHHHHHHHHHHHhhcCCCh--
Q 014444 192 GEFFHFAIPSAVMICLEWWSFELLILMSGL--LPNPQLETSVLSVCLNTIQTL-YAIPYGLGAAVSTRVSNELGAGNV-- 266 (424)
Q Consensus 192 ~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~~i~~~~~~~~-~~~~~~~~~a~~~~is~~~g~~~~-- 266 (424)
++.++.....+.+++...+...-|.+++.. +.+.+ +-+.|+++++..+++ -.+...+-.+.....++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 788999999999999998888888887777 44433 337799999998886 466678888888888888865533
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhcc
Q 014444 267 -------QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGC 339 (424)
Q Consensus 267 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 339 (424)
++..+.....++....++++...+....++.+.+++.++.=....+...++.++...|+.+++.+..+..++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3456667777777777777777766677777777765432222234678999999999999999999999999
Q ss_pred CcchhhHHHHHHHH--HHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 340 GWQNIAAFVNLGAF--YLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 340 g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
.+++.....+-... -++.+..+|.+... ++|..|..+|..+...++......++++
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776544443332 14556677888754 7999999999999999998888777765
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.69 E-value=3.9e-06 Score=82.82 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCC
Q 014444 4 KCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQD 82 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 82 (424)
+-.+|. +..........+ ...++...-|.+||...++|+++.++..++++......+++..+. ..+++|+...+..+
T Consensus 248 ~vG~Y~-~a~~i~~~~~~~-~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~ 325 (480)
T COG2244 248 QVGIYS-AAQRLVSLLLIV-ASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGE 325 (480)
T ss_pred Hheecc-cccHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCC
Confidence 344566 333333334455 689999999999999999999999999999999999999999886 88888998877555
Q ss_pred hhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHH
Q 014444 83 PQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGIS 158 (424)
Q Consensus 83 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~ 158 (424)
+.. .+...+.+.++..++..+.......+++.|+.+.....+....++|.+++++++.. .|..|++.++ .+
T Consensus 326 ~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 326 KYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred ccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 432 26677899999999999999999999999999999999999999999999998865 7888999999 44
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=0.00018 Score=66.83 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=131.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhh---cCCChhhhHHHHHHHHHhhHHH-HHhhhhHHHHHHHHHHHhhcCCChH
Q 014444 192 GEFFHFAIPSAVMICLEWWSFELLILMSG---LLPNPQLETSVLSVCLNTIQTL-YAIPYGLGAAVSTRVSNELGAGNVQ 267 (424)
Q Consensus 192 ~~i~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~aa~~i~~~~~~~~-~~~~~~~~~a~~~~is~~~g~~~~~ 267 (424)
++..+.......+.....+...-+-.++. ..+-+++ +.|.++++..++. -.+...+-.......+|...+++.|
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34444444444555555555555544433 2222344 5699999987775 5666788899999999999888888
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchh
Q 014444 268 KARVAVY---AVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNI 344 (424)
Q Consensus 268 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 344 (424)
+.|+... ..++....++.....+....+++...++++++=....+...+++++...++.+++.+..+...+.++.+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 7777554 4445555555544444455566677777553222223447899999999999999999999999886655
Q ss_pred hHHHH---HHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHH
Q 014444 345 AAFVN---LGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 395 (424)
Q Consensus 345 ~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 395 (424)
.-..+ +... +..+..+|++. ..+|..|...|..+...++-+-...+++
T Consensus 397 i~~~n~~mlafS-viflilsylL~--~~~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLI--RWFGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHH--HHhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43322 2222 45667888888 5578899999988887777665544443
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.29 E-value=1.7e-05 Score=64.47 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=73.3
Q ss_pred HHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 014444 93 MIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKF 172 (424)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~~~~~~~~~ 172 (424)
+++.+++.++..+.+.....+++.|+++.....++.+.++|++++++++.. +|..|+++|+.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999754 999999999999999999998888876
Q ss_pred cc
Q 014444 173 ST 174 (424)
Q Consensus 173 ~~ 174 (424)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 53
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.25 E-value=7.6e-06 Score=66.59 Aligned_cols=79 Identities=15% Similarity=0.116 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHH
Q 014444 316 APLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITT 395 (424)
Q Consensus 316 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 395 (424)
+++.+++.++..+....+..+++.||+|..++.+.++. ++++++++++. |++|..|+++++.+++.+......++.+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999998 89999999997 8899999999999999999999888888
Q ss_pred hc
Q 014444 396 CT 397 (424)
Q Consensus 396 ~~ 397 (424)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.11 E-value=0.00062 Score=61.43 Aligned_cols=171 Identities=18% Similarity=0.241 Sum_probs=106.9
Q ss_pred HHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHh-hhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014444 212 FELLILMSGLLPNPQLETSVLSVCLNTIQTLYAI-PYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSAT 290 (424)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~-~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
.....++...+|.++. +.++....+.++...+ ..|++++..-..+++..+ .++.++.........++.++.....
T Consensus 20 ~~~~~il~r~l~~~~~--G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 95 (273)
T PF01943_consen 20 FITIPILARYLGPEEY--GIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFLLLIFSLIFLLI 95 (273)
T ss_pred HHHHHHHHHHhCHHHh--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666676555 7799999988888776 468888888888876432 3444444444444444433333333
Q ss_pred HHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCC
Q 014444 291 LFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKF 370 (424)
Q Consensus 291 ~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 370 (424)
..... .+..+ +... .+........++..........+++.++.+.....++... +........+... ..
T Consensus 96 ~~~~~-----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 164 (273)
T PF01943_consen 96 LLIAS-----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS-LLSLLLILLLLFL-GS 164 (273)
T ss_pred HHHHH-----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hh
Confidence 33222 33332 2221 1222222222577888889999999999999999888887 5555455555432 33
Q ss_pred CcchhHHHHHHhHHHHHHHHHHHHHhc
Q 014444 371 RGRGLWIGIQAGAFTQTLLLGIITTCT 397 (424)
Q Consensus 371 g~~g~~~a~~i~~~~~~~~~~~~~~~~ 397 (424)
+..+...+..++..+..+......+|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 165 SLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999988888877776643
No 40
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.07 E-value=0.0021 Score=57.40 Aligned_cols=170 Identities=9% Similarity=0.045 Sum_probs=112.9
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChh-hhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChH
Q 014444 189 QGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQ-LETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQ 267 (424)
Q Consensus 189 ~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~ 267 (424)
...+++.++-+|..+++....++-.+.+.-+++-.+++ ...|+|+++..+.-++..+...+-+....++.+ +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 45789999999999998888777777666555433333 347999999999999988888887765554433 322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hchhhh-ccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhh
Q 014444 268 KARVAVYAVIFMAVTETIVVSATLF-ASRRVF-GYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIA 345 (424)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i-~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 345 (424)
+-+ ........+.........+-+ .+.+.+ .+++.-||++.+.+...+.++..-.+++++.....+++-=.+++...
T Consensus 83 rr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 222 222222222222222122222 333433 36778899999999999999999999999999999888866777776
Q ss_pred HHHHHHHHHHhhhhHHHHHH
Q 014444 346 AFVNLGAFYLCGIPTAAILG 365 (424)
Q Consensus 346 ~~~~~~~~~~~~i~~~~~l~ 365 (424)
...++... ...+....++.
T Consensus 162 ~~aSI~~v-~~qvV~v~~ll 180 (345)
T PF07260_consen 162 GSASIADV-IAQVVLVAILL 180 (345)
T ss_pred ehHHHHHH-HHHHHHHHHHH
Confidence 66666654 44444444444
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.03 E-value=0.011 Score=54.09 Aligned_cols=346 Identities=10% Similarity=0.039 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHH
Q 014444 8 FFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISH 87 (424)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 87 (424)
++++....++..-.++..|+....++++|...=++|++++..-....+.+....+.+++.+..+ .+.+.+..
T Consensus 61 ~Flssv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~-------~~~~~si~- 132 (467)
T COG4267 61 QFLSSVTYCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF-------VNNQYSIV- 132 (467)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh-------hcCchhHH-
Confidence 4455555554444444899999999999999888888888776666666655555555532111 12222222
Q ss_pred HHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHH
Q 014444 88 EVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLA 167 (424)
Q Consensus 88 ~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~~~~ 167 (424)
|=..........+..-....++.+.++.+....+-.++.++.+.+..++-. ++..|..++..++.........
T Consensus 133 ----yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~ 205 (467)
T COG4267 133 ----YKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLN 205 (467)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHH
Confidence 111223344444555555666677777777777777787777777666554 5899999999999999888888
Q ss_pred HHHHhcccc-ccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHH-------HHHHHHhh
Q 014444 168 IYMKFSTAC-AESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSV-------LSVCLNTI 239 (424)
Q Consensus 168 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa-------~~i~~~~~ 239 (424)
.+..+.-+. ++...++-. ..++.. ...+.....+.+..+|.++.-..++++. ++. |-+.--..
T Consensus 206 ~~Ilr~fk~~~~i~FdFL~----~~~~y~----SLllIg~FY~lgiwid~FifW~~~~~~~-Iag~~~~S~lYDvpiF~a 276 (467)
T COG4267 206 FYILRYFKSSRRIGFDFLL----YRRKYP----SLLLIGFFYNLGIWIDNFIFWKVPTGIE-IAGPFFASPLYDVPIFYA 276 (467)
T ss_pred HHHHHhcccccccceehhh----hhhcch----HHHHHHHHHHhHhhhhheeeEecCCCCE-eecceecchhhhHHHHHH
Confidence 877654321 111122211 111211 1222344445666777766444332221 111 22222222
Q ss_pred HHHHHhhh-----hHHHHHHHHHHHhh----cC-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccC
Q 014444 240 QTLYAIPY-----GLGAAVSTRVSNEL----GA-------GNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFS 303 (424)
Q Consensus 240 ~~~~~~~~-----~~~~a~~~~is~~~----g~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 303 (424)
.....+.. .+-+..++.--+.+ |- ++.++.....++.+.-.+-.-...++.+..+++.+...++
T Consensus 277 yl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~ 356 (467)
T COG4267 277 YLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFG 356 (467)
T ss_pred HHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222221 22233333222211 11 2344455566666666666777788888889999988877
Q ss_pred CcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHH-HhcCCCcchhHHHHHHh
Q 014444 304 NEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILG-FWLKFRGRGLWIGIQAG 382 (424)
Q Consensus 304 ~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~-~~~~~g~~g~~~a~~i~ 382 (424)
-++-. .+..++-..+.-.+......-.+.--..+-+..+..+..-. +.|-.+.++.. ..|++--.|...|..+.
T Consensus 357 lS~~~----l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~lgp~~~g~gff~a~fl~ 431 (467)
T COG4267 357 LSEYY----LDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLELGPGYYGVGFFLASFLY 431 (467)
T ss_pred hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHHhCccceehHHHHHHHHH
Confidence 65432 23344444444333333332222222333444444433332 34455555543 23444444555544443
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.85 E-value=0.0037 Score=55.64 Aligned_cols=165 Identities=14% Similarity=0.232 Sum_probs=106.6
Q ss_pred HHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhh-hhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014444 213 ELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIP-YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATL 291 (424)
Q Consensus 213 ~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~-~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
....++...++.++. +.|+....+..+...+. .|+.+.. .+ ..++|.++.++..+.......+.+++.....
T Consensus 6 ~~~~~lar~l~~~~~--G~~~~~~s~~~~~~~~~~~g~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 6 LFLILLARYLGPEDF--GIYALIFSIVSILSIVASLGLRQSL----VR-SAARDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHHCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666776655 66888888888776653 4444443 33 2346777777777777666555554444432
Q ss_pred HhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCC
Q 014444 292 FASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFR 371 (424)
Q Consensus 292 ~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g 371 (424)
..... .+ ++++. ..++.......++..........+++.+|.+.....+.... +........+.. .+.+
T Consensus 79 ~~~~~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 147 (251)
T PF13440_consen 79 ILIAY----FF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLY-LGLN 147 (251)
T ss_pred HHHHH----Hh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHH-HHhh
Confidence 22222 33 33332 23566677778888999999999999999999999998887 444333333332 3338
Q ss_pred cchhHHHHHHhHHHHHHHHHHHHH
Q 014444 372 GRGLWIGIQAGAFTQTLLLGIITT 395 (424)
Q Consensus 372 ~~g~~~a~~i~~~~~~~~~~~~~~ 395 (424)
..+..++..++..+..+......+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888988888887766655443
No 43
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.82 E-value=0.022 Score=51.03 Aligned_cols=149 Identities=14% Similarity=0.027 Sum_probs=85.3
Q ss_pred HHhCCChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhcc-C--CccchhHH
Q 014444 77 VLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKS-G--LGNLGGAL 153 (424)
Q Consensus 77 ~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~-~--~g~~g~al 153 (424)
..++.+|++.+.+...+.++..--.+.++....+|++--+++.......++...+..+++..+++... + -+..--.+
T Consensus 116 ~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil 195 (345)
T PF07260_consen 116 DLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPIL 195 (345)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHccccCccccHHHHHH
Confidence 44688999999998888888887778888888888887555554444444444444444343444221 1 11111112
Q ss_pred HHHHHHHHHHHH-HHHHHHhccccccccCCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-CCCh
Q 014444 154 AIGISNWLNVTF-LAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNP 225 (424)
Q Consensus 154 a~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~ 225 (424)
+...+..+-..+ ++.|..+-.+.........+.+...+++++++.+|.+.....+..+-.+...++++ +++.
T Consensus 196 ~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs 269 (345)
T PF07260_consen 196 ALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGS 269 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 222222221111 12222121111122222223333568999999999999999988888888887777 5554
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.66 E-value=0.0083 Score=59.48 Aligned_cols=168 Identities=12% Similarity=0.020 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCch---------hhHHHHHHHHHHHHHHHHHHHHHH-HHhHH
Q 014444 4 KCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQY---------QRIGTQTYTAIFCLFLVCFPLSFL-WIYAG 73 (424)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 73 (424)
+-..|++++++-.+..-.+ ..=+--..-.+.||...+++. ++..+.+...+.+...+++++..+ ...++
T Consensus 290 ~QGvY~lv~N~GSLvaR~l-F~PiEEs~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~ 368 (549)
T PF04506_consen 290 DQGVYALVSNYGSLVARLL-FQPIEESSRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSP 368 (549)
T ss_pred HhhHHHHHhhHHHHHHHHH-hCcHHHHHHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHH
Confidence 3457888888888877666 666666666677776654322 446677888888888888888877 77788
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhc---CchhHHHHHHHHHHHhHHHHHHHHhhccCCccch
Q 014444 74 KLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQ---SLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLG 150 (424)
Q Consensus 74 ~i~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g 150 (424)
.++..++.++=..+.+.+.++..+..+|+.+++.+.-++.++. ++.+..-.......++-+..+++++.. ++|..|
T Consensus 369 ~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~G 447 (549)
T PF04506_consen 369 LLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVG 447 (549)
T ss_pred HHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCch
Confidence 8888765432222234566888999999999999999999972 223333333566666777888888876 899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 014444 151 GALAIGISNWLNVTFLAIYMKFS 173 (424)
Q Consensus 151 ~ala~~i~~~~~~~~~~~~~~~~ 173 (424)
..+|+.+....-.+.+..++++.
T Consensus 448 lI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 448 LILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.02 Score=53.70 Aligned_cols=164 Identities=10% Similarity=-0.002 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhh---HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCC
Q 014444 6 FLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQR---IGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQ 81 (424)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 81 (424)
..|.+.+.+-.+..-.+ ..=+.-..-.+.||...++++|+ +.++..+.+.+....++++..+ ...+++.+.+.+.
T Consensus 278 gvYd~v~n~GSLlaR~i-F~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG 356 (530)
T KOG2864|consen 278 GVYDLVSNYGSLLARLI-FRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGG 356 (530)
T ss_pred hHHHHHHhhhhHHHHHH-hChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcC
Confidence 46777777777766666 55566666666777666555444 4456666666667777666666 6667778887765
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcC---ch-hHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQS---LI-IPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGI 157 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~---~~-~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i 157 (424)
++=....+...+++.+..+|+.+++.+..+++.+.. +. +... ...+..++..+++++++-. +|..|..+|+++
T Consensus 357 ~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~-~mlafSviflilsylL~~~--~~~~GlIlANii 433 (530)
T KOG2864|consen 357 SKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNK-FMLAFSVIFLILSYLLIRW--FGLVGLILANII 433 (530)
T ss_pred ccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhccc-chhHHHHHHHHHHHHHHHH--hchhHHHHHHHH
Confidence 543333444679999999999999999999998622 11 2222 2355566667788888877 666899999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 014444 158 SNWLNVTFLAIYMKFS 173 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (424)
...+-.+..+.++++.
T Consensus 434 Nm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 434 NMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888887777654
No 46
>PF14184 YrvL: Regulatory protein YrvL
Probab=79.37 E-value=29 Score=27.38 Aligned_cols=112 Identities=11% Similarity=0.088 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhH-HHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 014444 51 TYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQI-SHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAA 129 (424)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~ 129 (424)
+...+.......++.+..+.....+.+.+|.+-|- .+...-.+.....+.|+..+...+...+.-.+..+... ....
T Consensus 4 ~~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~ 81 (132)
T PF14184_consen 4 FIIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLA 81 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHH
Confidence 33444455555555555566667788888877443 33333334455678888888887777776554444444 3567
Q ss_pred HHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHH
Q 014444 130 LCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVT 164 (424)
Q Consensus 130 ~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~ 164 (424)
..+....++.-++..+.=..++-+++..--+++.+
T Consensus 82 ~~id~~~t~~~i~~aD~~m~sI~is~~~e~i~al~ 116 (132)
T PF14184_consen 82 FIIDFLFTWITIYTADELMESISISTLSEIIFALL 116 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeCcHHHHHHHHH
Confidence 77777777777776554344444444333333333
No 47
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=70.66 E-value=52 Score=30.40 Aligned_cols=152 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHHHHHhHHhHHHHH
Q 014444 27 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATM 106 (424)
Q Consensus 27 l~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~ 106 (424)
+..-.++.+.+. ++.+|-..+.+.-.+.--...+...+++..|+.+=-...+++.++.-.+.++........+.....
T Consensus 190 i~G~lTR~i~~k--~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i 267 (342)
T COG0798 190 IAGVLTRYILIK--KKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYFI 267 (342)
T ss_pred HHHHHHHHHHHH--hccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCch
Q 014444 107 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISM 185 (424)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (424)
.=..+. ..++..+......-++.--.+..-+-.++ .-.|+|++++++..+....+..+++-.++.++++.+-.+
T Consensus 268 ~k~lgl--~y~~~~~~~ft~aSNnfeLAiAvAi~lfG---~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~~~~~~ 341 (342)
T COG0798 268 AKALGL--PYEDAAALVFTGASNNFELAIAVAIALFG---LTSGAALATVVGPLVEVPVMLGLVKVALRIRKKYFKNER 341 (342)
T ss_pred HHHhCC--ChhhhhceeeeeccccHHHHHHHHHHhcC---ccccchhhhhccchhhHHHHHHHHHHHHHHhHhhcccCC
No 48
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=64.27 E-value=47 Score=23.67 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 014444 247 YGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIV 286 (424)
Q Consensus 247 ~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
.-++...+..+-..+.+||++++++..+++..++.+-.+.
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 3344445566778888999999999999998888655443
No 49
>COG4267 Predicted membrane protein [Function unknown]
Probab=57.63 E-value=1.7e+02 Score=27.69 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHH
Q 014444 245 IPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVI 324 (424)
Q Consensus 245 ~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 324 (424)
+..+++....-.+|.-+=+||++++.....-........+...+...+.. .+++.. ..+ ...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si---~yk--~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI---VYK--ILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH---HHH--HHHHHHHH
Confidence 33577777777788888788888888888777777666666555322211 122211 111 12233333
Q ss_pred HHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHhcCCCcchhHHHHHHhHHHHHHHHHHHHHh
Q 014444 325 MDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTC 396 (424)
Q Consensus 325 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 396 (424)
..+..-+....+.+++|-+...+.-.++. .+.+.++.++. ..+..|.-++..++......+...+..|
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34444455667778888888777777775 66777777765 4588899999999888777766655544
No 50
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.13 E-value=75 Score=27.42 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCh---------hHHHHHHHHHHHHHhHHhHHH
Q 014444 43 QYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDP---------QISHEVGKFMIWLLPALFAYA 104 (424)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~a~~y~~~~~~~~~~~~ 104 (424)
++++....+..++...+.+-.++++++....|+..+++.|. +..+....|+..++.++|-..
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHHH
Confidence 34444555555555555444455555666677777776432 111223456666666665544
No 51
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=41.73 E-value=3.2e+02 Score=26.09 Aligned_cols=36 Identities=3% Similarity=-0.034 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhcc
Q 014444 265 NVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGY 300 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 300 (424)
+.++.+++.+++...++........+.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999999999999998888888877777775
No 52
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=40.50 E-value=2.6e+02 Score=27.12 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=48.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 014444 198 AIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVI 277 (424)
Q Consensus 198 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~ 277 (424)
+.|.+++-+...++...-.++....-+++-+ ..-+.-....|+|.+....+++.+|+.+..+-+|...-++
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ra---------l~~laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRA---------LALLAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhh---------hhhhhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 4555555444333333334444443332211 1223344568999999999999999998888888887776
Q ss_pred HHHHHHHHH
Q 014444 278 FMAVTETIV 286 (424)
Q Consensus 278 ~~~~~~~~~ 286 (424)
....-.-+.
T Consensus 450 Afivs~~iv 458 (510)
T KOG2468|consen 450 AFIVSSFIV 458 (510)
T ss_pred HHHHHHHHH
Confidence 555443333
No 53
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=38.59 E-value=3e+02 Score=24.78 Aligned_cols=32 Identities=3% Similarity=-0.111 Sum_probs=22.1
Q ss_pred HHhhhhHHHHHHHHHHHhhcCCChHHHHHHHH
Q 014444 243 YAIPYGLGAAVSTRVSNELGAGNVQKARVAVY 274 (424)
Q Consensus 243 ~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~ 274 (424)
..+...+........-+...++|.+++++...
T Consensus 110 ~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 110 TIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 34445566677777777788899998866533
No 54
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.33 E-value=78 Score=21.25 Aligned_cols=11 Identities=36% Similarity=0.169 Sum_probs=4.2
Q ss_pred HhHHHHHHHHH
Q 014444 381 AGAFTQTLLLG 391 (424)
Q Consensus 381 i~~~~~~~~~~ 391 (424)
++.++..++..
T Consensus 30 ~G~llg~l~~~ 40 (68)
T PF06305_consen 30 LGALLGWLLSL 40 (68)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 55
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.36 E-value=1.5e+02 Score=27.25 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=28.5
Q ss_pred CcchhhHHHHHHHHHHhhhhHHHHHHHh-------cCCC-cchhHHHHHHhHHHHHHHHHHHHHhccH
Q 014444 340 GWQNIAAFVNLGAFYLCGIPTAAILGFW-------LKFR-GRGLWIGIQAGAFTQTLLLGIITTCTNW 399 (424)
Q Consensus 340 g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 399 (424)
+..+..-..++++. +..|...+-..+ |... ..|.++...+ ..+.+++.+++++|++|
T Consensus 253 ~~N~~mk~LTvvt~--IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~-m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVST--IFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIV-MAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhCCcccCccccchhHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 34445555666664 456666654421 2111 1333333333 33445556677777777
No 56
>PTZ00370 STEVOR; Provisional
Probab=27.15 E-value=1.1e+02 Score=27.57 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=17.9
Q ss_pred CcchhHHHHHHhHHHHHHHH-HHHHHhc--cHHHHHHH
Q 014444 371 RGRGLWIGIQAGAFTQTLLL-GIITTCT--NWEKQASK 405 (424)
Q Consensus 371 g~~g~~~a~~i~~~~~~~~~-~~~~~~~--~~~~~~~~ 405 (424)
++.|++.-.++--.+..+++ +|.++|| .|+++..+
T Consensus 255 ~Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 255 YPYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 45565555555444555544 4444444 36665443
No 57
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.85 E-value=1.9e+02 Score=26.73 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHh-------cCCC-cchhHHHHHHhHHHHHHHHHHHHHhccH
Q 014444 347 FVNLGAFYLCGIPTAAILGFW-------LKFR-GRGLWIGIQAGAFTQTLLLGIITTCTNW 399 (424)
Q Consensus 347 ~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 399 (424)
..++++. +.+|..++-..+ |..+ ..|.++...+ ..+.++..+++++|++|
T Consensus 266 ~Ltilt~--IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAM--VFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHH--HHHHHHHHHhhhccccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 4555554 455766664432 2111 1344433333 33445556667777777
No 58
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.81 E-value=80 Score=24.50 Aligned_cols=10 Identities=40% Similarity=0.880 Sum_probs=4.0
Q ss_pred hhHHHHHHhH
Q 014444 374 GLWIGIQAGA 383 (424)
Q Consensus 374 g~~~a~~i~~ 383 (424)
|+.+|...+-
T Consensus 68 ~Ii~gv~aGv 77 (122)
T PF01102_consen 68 GIIFGVMAGV 77 (122)
T ss_dssp HHHHHHHHHH
T ss_pred ehhHHHHHHH
Confidence 3344444433
No 59
>PRK03612 spermidine synthase; Provisional
Probab=25.20 E-value=7.1e+02 Score=25.00 Aligned_cols=47 Identities=13% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHH
Q 014444 123 FLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYM 170 (424)
Q Consensus 123 ~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~~~~~~~ 170 (424)
...+.++.++..++..+ +..+.+|..+..+.....+....+...+..
T Consensus 151 y~~ntlGa~~G~l~~~~-vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~ 197 (521)
T PRK03612 151 LAADYLGALVGGLAFPF-LLLPRLGLIRTAALTGSLNLLAALVFLWLF 197 (521)
T ss_pred HhHHhHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666665544322 222347776666655555555555444443
No 60
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=24.87 E-value=1e+02 Score=23.97 Aligned_cols=26 Identities=4% Similarity=0.013 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhcc
Q 014444 149 LGGALAIGISNWLNVTFLAIYMKFST 174 (424)
Q Consensus 149 ~g~ala~~i~~~~~~~~~~~~~~~~~ 174 (424)
.|+.++...+-+...++..|+++|++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~ 92 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLR 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433344444444433
No 61
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.56 E-value=7.1e+02 Score=24.79 Aligned_cols=100 Identities=9% Similarity=-0.022 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhccCCccchhHHHHHHHHHHHHHHHHHHHHhccccccccCCCch-
Q 014444 107 QPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISM- 185 (424)
Q Consensus 107 ~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~~~~g~~g~ala~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (424)
+...+.+...+..+-...+.+.+...-+....+.....+.|..-....+.++........++.+++..+..+.|.+.+.
T Consensus 155 ~~Yer~LeSl~~~~diY~sll~S~tf~v~~i~i~~il~~~~~~~~l~ls~~~~~~~~~l~l~~i~~~~P~dp~~h~~~~k 234 (527)
T COG1955 155 TEYERALESLDVWKDIYVSLLVSLTFLVAFILILPILYGGNTTLILYLSLLAVFAIEILLLYVIFKALPKDPLWHRLRIK 234 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHheeeecCCcchhccCCCC
Confidence 3344444444444433333333333323233333333356665666666666666666666666655544443333222
Q ss_pred -HhHhhHHHHHHHHhHHHHHHH
Q 014444 186 -ELFQGIGEFFHFAIPSAVMIC 206 (424)
Q Consensus 186 -~~~~~~~~i~~~~~p~~~~~~ 206 (424)
++-+.+|+....++|.....+
T Consensus 235 t~~~~~i~~~~~isi~l~~iv~ 256 (527)
T COG1955 235 TKEQIKIRRLAIISITLSAIVL 256 (527)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 223456777777777655433
No 62
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=23.44 E-value=1.8e+02 Score=20.68 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=4.7
Q ss_pred HHHhccHHHHHHHHHHHhhc
Q 014444 393 ITTCTNWEKQASKARERISK 412 (424)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~ 412 (424)
.+++.+.++++.+--+|...
T Consensus 29 eYrk~~rqrkId~li~RIre 48 (81)
T PF00558_consen 29 EYRKIKRQRKIDRLIERIRE 48 (81)
T ss_dssp ----------CHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHc
Confidence 33343444444444455544
No 63
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=23.13 E-value=2.8e+02 Score=19.67 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=23.1
Q ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 014444 34 LCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLS 66 (424)
Q Consensus 34 ~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (424)
.+-..+.+||++++++.-+.+-.++.+..++..
T Consensus 43 kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 43 KVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred hhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556689999999988888777655444433
No 64
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=21.95 E-value=5.6e+02 Score=22.62 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=14.3
Q ss_pred hhcCchhHHHHHHHHHHHhHHHHHHHHh
Q 014444 114 QSQSLIIPMFLSSCAALCLHIPICWSLV 141 (424)
Q Consensus 114 ~~~~~~~~~~~~~i~~~~~ni~l~~~li 141 (424)
+.+-+.+......++..+.=..+...+.
T Consensus 186 ~~~~~~~~~~~Ga~~~~~~~~~~~~~f~ 213 (260)
T PF03631_consen 186 NRRVRWRAALPGALFAAVLWFLLSYGFS 213 (260)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555445544444
Done!