Query 014444
Match_columns 424
No_of_seqs 201 out of 1854
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 11:40:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 7.9E-45 2.7E-49 354.5 27.4 393 2-398 44-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 3.2E-19 1.1E-23 173.3 18.7 208 186-397 6-217 (460)
3 2ks1_B Epidermal growth factor 35.6 69 0.0023 18.9 4.1 10 164-173 29-38 (44)
4 4ev6_A Magnesium transport pro 31.2 63 0.0022 28.9 5.3 54 343-399 277-338 (339)
5 2k1k_A Ephrin type-A receptor 27.6 60 0.0021 18.4 2.8 17 149-165 14-30 (38)
6 2jwa_A Receptor tyrosine-prote 27.6 80 0.0027 18.6 3.4 8 167-174 32-39 (44)
7 2knc_B Integrin beta-3; transm 16.1 2.5E+02 0.0085 18.9 4.5 22 371-392 9-30 (79)
8 2wgm_A ATP synthase subunit C, 15.5 2.4E+02 0.0082 19.4 4.5 16 41-56 44-59 (89)
9 4aps_A DI-OR tripeptide H+ sym 14.6 6.7E+02 0.023 22.7 26.9 12 254-265 339-350 (491)
10 1pw4_A Glycerol-3-phosphate tr 13.9 6.6E+02 0.023 22.3 31.1 357 15-411 66-451 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=7.9e-45 Score=354.48 Aligned_cols=393 Identities=21% Similarity=0.334 Sum_probs=356.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Q 014444 2 DLKCFLFFYSTAILNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQ 81 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 81 (424)
++....|++++.+..+ ...+ ..|++.+..+.+||+.|++|+++.++.+++++.+..+.+++.++++.+.+|++.+++.
T Consensus 44 ~~~~~~~~~~~~i~~~-~~~~-~~g~~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 121 (460)
T 3mkt_A 44 AIDMAAVSIAASIWLP-SILF-GVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDV 121 (460)
T ss_dssp TTTSSHHHHHHHHHHH-HHHH-HHHHHHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSS
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC
Confidence 4566788899988554 4445 7899999999999999999999999999999999999999987777788999998999
Q ss_pred ChhHHHHHHHHHHHHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhhc-c---CCccchhHHHHHH
Q 014444 82 DPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-S---GLGNLGGALAIGI 157 (424)
Q Consensus 82 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~~-~---~~g~~g~ala~~i 157 (424)
+++..+.+..|+++..++.|+..+.....+.+|++++.++++..++++.++|+++++++++. + ++|+.|+++++++
T Consensus 122 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i 201 (460)
T 3mkt_A 122 EEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAI 201 (460)
T ss_dssp TTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 3 7999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc--CCCchHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHH
Q 014444 158 SNWLNVTFLAIYMKFSTACAESR--VPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVC 235 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~ 235 (424)
++.+..++..++.+++++..+.+ .+..+.+++..|++++++.|..+++.........+..+++++|++ ++++|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~ 279 (460)
T 3mkt_A 202 VYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVA 279 (460)
T ss_dssp HHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHH
Confidence 99999999988887765432211 222344567889999999999999999999999999999999765 55999999
Q ss_pred HHhhHHHHHhhhhHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHH
Q 014444 236 LNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTM 315 (424)
Q Consensus 236 ~~~~~~~~~~~~~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 315 (424)
+++.++...+..+++++..|.+++++|+||+|++++..+++.++.+.++++.++.++++++++.++|++|+++.+.+..+
T Consensus 280 ~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 359 (460)
T 3mkt_A 280 LNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQL 359 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998989999999
Q ss_pred hHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHHHhhhhHHHHHHHh----cC-CCcchhHHHHHHhHHHHHHHH
Q 014444 316 APLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFW----LK-FRGRGLWIGIQAGAFTQTLLL 390 (424)
Q Consensus 316 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~ 390 (424)
+++++++.++++++....+++++.||++.+++.++++.|++++|+++++.+. ++ +|..|+|+++.+++.+..++.
T Consensus 360 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~ 439 (460)
T 3mkt_A 360 LLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALML 439 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999989999999999966 56 999999999999999998888
Q ss_pred HHHHHhcc
Q 014444 391 GIITTCTN 398 (424)
Q Consensus 391 ~~~~~~~~ 398 (424)
.++++|+.
T Consensus 440 ~~~~~~~~ 447 (460)
T 3mkt_A 440 GQRLYWLQ 447 (460)
T ss_dssp HSSSSSSC
T ss_pred HHHHHHHH
Confidence 76666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=3.2e-19 Score=173.34 Aligned_cols=208 Identities=15% Similarity=0.111 Sum_probs=190.1
Q ss_pred HhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhhcCCC
Q 014444 186 ELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGN 265 (424)
Q Consensus 186 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~g~~~ 265 (424)
..++..|++++.++|..+++.........|..+++++|+++ +++++++.++..+...+..+++.+..|.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~--~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAID--MAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTT--SSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34567899999999999999999999999999999988764 4889999999888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcHHHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhh
Q 014444 266 VQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIA 345 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 345 (424)
+++.++..+.+..+.+..+++..+. +.+.+++..+++.|++..+.+..++++..++.++..+.....+.+|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998775 778888999998899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhHHHHHHHh----cCCCcchhHHHHHHhHHHHHHHHHHHHHhc
Q 014444 346 AFVNLGAFYLCGIPTAAILGFW----LKFRGRGLWIGIQAGAFTQTLLLGIITTCT 397 (424)
Q Consensus 346 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 397 (424)
++.++++. ++++++++++.+. |++|+.|+++++.+++.+..++...+.+++
T Consensus 163 ~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 163 MVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp HHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999998 7899999999864 479999999999999999999887777654
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.65 E-value=69 Score=18.90 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=4.0
Q ss_pred HHHHHHHHhc
Q 014444 164 TFLAIYMKFS 173 (424)
Q Consensus 164 ~~~~~~~~~~ 173 (424)
+..+++++++
T Consensus 29 ~~~~~~~RRr 38 (44)
T 2ks1_B 29 LGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=31.19 E-value=63 Score=28.85 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHh-------cCCC-cchhHHHHHHhHHHHHHHHHHHHHhccH
Q 014444 343 NIAAFVNLGAFYLCGIPTAAILGFW-------LKFR-GRGLWIGIQAGAFTQTLLLGIITTCTNW 399 (424)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 399 (424)
+..-..++++. +.+|..++-..+ |..+ ..|.|+...+ .++.+++.+++++|++|
T Consensus 277 ~~mk~LTiit~--IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVTT--IFAVPMWITGIYGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHH--HSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHH--HHHHHHHHHhhccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 34445566653 556776665532 2221 2455554444 34455566677777777
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.63 E-value=60 Score=18.42 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=7.0
Q ss_pred chhHHHHHHHHHHHHHH
Q 014444 149 LGGALAIGISNWLNVTF 165 (424)
Q Consensus 149 ~g~ala~~i~~~~~~~~ 165 (424)
.|+..+.+.+-.+....
T Consensus 14 AGiVvG~v~gv~li~~l 30 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLGI 30 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 34444444444433333
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=27.60 E-value=80 Score=18.62 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.5
Q ss_pred HHHHHhcc
Q 014444 167 AIYMKFST 174 (424)
Q Consensus 167 ~~~~~~~~ 174 (424)
.+|++|++
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 44444443
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=16.08 E-value=2.5e+02 Score=18.88 Aligned_cols=22 Identities=5% Similarity=-0.088 Sum_probs=10.1
Q ss_pred CcchhHHHHHHhHHHHHHHHHH
Q 014444 371 RGRGLWIGIQAGAFTQTLLLGI 392 (424)
Q Consensus 371 g~~g~~~a~~i~~~~~~~~~~~ 392 (424)
.+.++..+...+-++.+++.+.
T Consensus 9 n~~~Iv~gvi~gilliGlllll 30 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALL 30 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444433
No 8
>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*
Probab=15.46 E-value=2.4e+02 Score=19.44 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=9.4
Q ss_pred CCchhhHHHHHHHHHH
Q 014444 41 AQQYQRIGTQTYTAIF 56 (424)
Q Consensus 41 ~~~~~~~~~~~~~~~~ 56 (424)
++++|..++.+...+.
T Consensus 44 arqPe~~~~l~~~~ii 59 (89)
T 2wgm_A 44 ARQPEAKGDIISTMVL 59 (89)
T ss_dssp HHCGGGHHHHHHHHHH
T ss_pred HhCchHhhhHHHHHHH
Confidence 3566766666665543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=14.63 E-value=6.7e+02 Score=22.74 Aligned_cols=12 Identities=0% Similarity=-0.161 Sum_probs=5.7
Q ss_pred HHHHHHhhcCCC
Q 014444 254 STRVSNELGAGN 265 (424)
Q Consensus 254 ~~~is~~~g~~~ 265 (424)
...+.+.+|+++
T Consensus 339 ~~~l~~r~~~r~ 350 (491)
T 4aps_A 339 FAWLWTAWKKNQ 350 (491)
T ss_dssp HHHHHHHTTTC-
T ss_pred HHHHHHHHhccC
Confidence 344555566553
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=13.95 E-value=6.6e+02 Score=22.31 Aligned_cols=357 Identities=8% Similarity=-0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCChhHHHHHHHHHH
Q 014444 15 LNCVIFTLKQLGMASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMI 94 (424)
Q Consensus 15 ~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~a~~y~~ 94 (424)
.......+ ...++.-.....+..+|+++ .+....+...+..++..+.+.. .+.-..-.....+.
T Consensus 66 ~~~~~~~~-~~~~~~~~~G~l~dr~g~r~----------~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~l~ 129 (451)
T 1pw4_A 66 FALSGISI-AYGFSKFIMGSVSDRSNPRV----------FLPAGLILAAAVMLFMGFVPWA-----TSSIAVMFVLLFLC 129 (451)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHSCHHH----------HHHHHHHHHHHHHHHHHHCHHH-----HSSSSHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHhHHHHHHhcCchH----------HHHHHHHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHH
Q ss_pred HHHhHHhHHHHHHHHHHHHhhcCchhHHHHHHHHHHHhHHHHHHHHhh-ccCCc-cchhHHHHHHHHHHHHHHHHHHHHh
Q 014444 95 WLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVY-KSGLG-NLGGALAIGISNWLNVTFLAIYMKF 172 (424)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ni~l~~~li~-~~~~g-~~g~ala~~i~~~~~~~~~~~~~~~ 172 (424)
-+..+................+++.+...+......+-.++...+--. ....| .....+...+...+..+......+.
T Consensus 130 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 130 GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccC
Q ss_pred ccccccccCCCc-----------------------hHhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc-CCChhhh
Q 014444 173 STACAESRVPIS-----------------------MELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGL-LPNPQLE 228 (424)
Q Consensus 173 ~~~~~~~~~~~~-----------------------~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 228 (424)
.++......+-. ..+.-.-++++...+..++.................. .+.+...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 289 (451)
T 1pw4_A 210 TPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289 (451)
T ss_dssp SSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH
T ss_pred CHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Q ss_pred HHHHHHHHHhhHHHHHhhhhHHHHHHHHHHHhh--cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhccccCCcH
Q 014444 229 TSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL--GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEK 306 (424)
Q Consensus 229 ~aa~~i~~~~~~~~~~~~~~~~~a~~~~is~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 306 (424)
. ........+...++.-....+++.+ |+ +.............+...+.+.+ ++.
T Consensus 290 ~-------~~~~~~~~~~~~~~~~~~g~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 345 (451)
T 1pw4_A 290 S-------SWAYFLYEYAGIPGTLLCGWMSDKVFRGN----------RGATGVFFMTLVTIATIVYWMNP-------AGN 345 (451)
T ss_dssp H-------HHHHHHHHHHHHHHHHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHHTTSCC-------TTC
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHhcCC----------chhHHHHHHHHHHHHHHHHHHhc-------ccC
Q ss_pred HHHHHHHHHhHHHHHHHHHHhHHHhHhhhhhccCcchhhHHHHHHHHH-HhhhhHHHHHHHhcCCCcchhHHHHHHhHHH
Q 014444 307 QVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFY-LCGIPTAAILGFWLKFRGRGLWIGIQAGAFT 385 (424)
Q Consensus 307 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~i~~~~~l~~~~~~g~~g~~~a~~i~~~~ 385 (424)
...-.....+.-...+..................+.+.....+..... ...+.....-....+.|....++...+...+
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 425 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSIL 425 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh
Q 014444 386 QTLLLGIITTCTNWEKQASKARERIS 411 (424)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (424)
..++.....++++.+++...++...+
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (451)
T 1pw4_A 426 AVILLIVVMIGEKRRHEQLLQELVPR 451 (451)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGSCC-
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhcCC
Done!