Query 014444
Match_columns 424
No_of_seqs 201 out of 1854
Neff 10.3
Searched_HMMs 13730
Date Mon Mar 25 11:40:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014444.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014444hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 5.4 6.6E+02 0.048 19.8 31.1 25 368-392 405-429 (447)
2 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.5 2.3E+02 0.017 15.9 2.0 26 35-60 2-27 (53)
3 d2iuba2 f.17.3.1 (A:286-349) M 4.3 3.6E+02 0.026 15.3 3.2 9 356-364 15-23 (64)
4 d2d5ba1 a.27.1.1 (A:349-500) M 4.0 3.6E+02 0.026 18.4 3.5 43 41-83 80-123 (152)
5 d1ppjd2 f.23.11.1 (D:196-241) 3.7 3.7E+02 0.027 14.4 2.6 13 389-401 22-34 (46)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 3.6 5.3E+02 0.038 16.1 8.6 17 191-207 70-86 (100)
7 d2csba3 a.60.2.4 (A:410-464) T 3.0 2.8E+02 0.02 14.7 1.4 19 73-91 16-34 (55)
8 d2gf4a1 a.8.10.1 (A:1-89) Nypo 2.9 3.8E+02 0.027 16.9 2.2 17 2-18 50-66 (89)
9 d1j1va_ a.4.12.2 (A:) Chromoso 2.9 6.1E+02 0.044 15.6 3.4 24 252-275 47-70 (94)
10 d1u61a_ a.149.1.1 (A:) Hypothe 2.7 7.6E+02 0.055 16.1 4.8 31 248-278 93-123 (127)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.39 E-value=6.6e+02 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=13.8
Q ss_pred cCCCcchhHHHHHHhHHHHHHHHHH
Q 014444 368 LKFRGRGLWIGIQAGAFTQTLLLGI 392 (424)
Q Consensus 368 ~~~g~~g~~~a~~i~~~~~~~~~~~ 392 (424)
.+.|..+..+.......+..++...
T Consensus 405 ~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 405 DFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHH
Confidence 4567666666555555554444443
No 2
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.51 E-value=2.3e+02 Score=15.91 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=15.3
Q ss_pred HHHHhCCCchhhHHHHHHHHHHHHHH
Q 014444 35 CGQAYGAQQYQRIGTQTYTAIFCLFL 60 (424)
Q Consensus 35 is~~~g~~~~~~~~~~~~~~~~~~~~ 60 (424)
.++..|++..+-++..+.+.......
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a 27 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAV 27 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 35666766666666666665544443
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.27 E-value=3.6e+02 Score=15.28 Aligned_cols=9 Identities=22% Similarity=0.135 Sum_probs=4.1
Q ss_pred hhhhHHHHH
Q 014444 356 CGIPTAAIL 364 (424)
Q Consensus 356 ~~i~~~~~l 364 (424)
+.+|.+.+-
T Consensus 15 iflP~t~i~ 23 (64)
T d2iuba2 15 IFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444554443
No 4
>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}
Probab=4.04 E-value=3.6e+02 Score=18.44 Aligned_cols=43 Identities=12% Similarity=0.020 Sum_probs=27.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCh
Q 014444 41 AQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDP 83 (424)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~ 83 (424)
++|.+++++++..++-..-.+++.+..+ =-.++.+...+|.++
T Consensus 80 k~d~~~~~~vl~~~l~~lr~l~ilL~P~mP~~~~ki~~~Lg~~~ 123 (152)
T d2d5ba1 80 KKEPEEARAVLYRVVEGLRIASILLTPAMPDKMAELRRALGLKE 123 (152)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHTTCCS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHcCCCc
Confidence 3466677777777766666666666655 334566777777654
No 5
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.66 E-value=3.7e+02 Score=14.45 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=7.0
Q ss_pred HHHHHHHhccHHH
Q 014444 389 LLGIITTCTNWEK 401 (424)
Q Consensus 389 ~~~~~~~~~~~~~ 401 (424)
...++.+|..|..
T Consensus 22 ~l~yy~KR~~Ws~ 34 (46)
T d1ppjd2 22 PLVYAMKRHKWSV 34 (46)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh
Confidence 3445555556654
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.59 E-value=5.3e+02 Score=16.10 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHH
Q 014444 191 IGEFFHFAIPSAVMICL 207 (424)
Q Consensus 191 ~~~i~~~~~p~~~~~~~ 207 (424)
.-|+.-..+|..+-..+
T Consensus 70 ~LEiiWTviP~lILi~l 86 (100)
T d3dtub2 70 PLEIAWTIVPIVILVAI 86 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35777888887764443
No 7
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=3.05 E-value=2.8e+02 Score=14.68 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHhCCChhHHHHHHH
Q 014444 73 GKLLVLIGQDPQISHEVGK 91 (424)
Q Consensus 73 ~~i~~~~~~~~~~~~~a~~ 91 (424)
+-+++.|+.|+.+.+.+..
T Consensus 16 erllrafgnpervkqlare 34 (55)
T d2csba3 16 ERLLRAFGNPERVKQLARE 34 (55)
T ss_dssp HHHHHHHSSHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 4455566666665555443
No 8
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=2.93 E-value=3.8e+02 Score=16.86 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=9.2
Q ss_pred chhHHHHHHHHHHHHHH
Q 014444 2 DLKCFLFFYSTAILNCV 18 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (424)
|-|+++|-+++.+...+
T Consensus 50 eHk~AIF~L~~~Ia~~m 66 (89)
T d2gf4a1 50 EHKHAVFLLGNALAAAM 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666655555443
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=6.1e+02 Score=15.58 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHH
Q 014444 252 AVSTRVSNELGAGNVQKARVAVYA 275 (424)
Q Consensus 252 a~~~~is~~~g~~~~~~~~~~~~~ 275 (424)
...+-+|+.+|.+|+.-+-...++
T Consensus 47 ~sl~~Ig~~fg~rdHsTV~~a~kk 70 (94)
T d1j1va_ 47 HSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp CCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCchHHHHHHHH
Confidence 345778999988888777666665
No 10
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=2.67 E-value=7.6e+02 Score=16.15 Aligned_cols=31 Identities=16% Similarity=0.101 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 014444 248 GLGAAVSTRVSNELGAGNVQKARVAVYAVIF 278 (424)
Q Consensus 248 ~~~~a~~~~is~~~g~~~~~~~~~~~~~~~~ 278 (424)
-.+.++-++++..|=.++++++++...+.+.
T Consensus 93 ~lad~fEAliGalYLd~~~e~~~~~i~~~~~ 123 (127)
T d1u61a_ 93 RHSTAFEALIGYHHLLNNRERLDEIVYKAIA 123 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3678899999998877889999998877643
Done!