BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014445
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 58 LPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQD 117
LP G +F P+D E++ H L + P P I E VD + P +LP
Sbjct: 15 LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAE----VD----LYKFDPWDLPERALF 66
Query: 118 GSAAHFFYRAI-KAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLY 176
G+ +F+ + Y G+R R G W TG KPV G G KK +V Y
Sbjct: 67 GAREWYFFTPRDRKYPNGSRPNRAA-----GNGYWKATGADKPVAPRGRTLGIKKALVFY 121
Query: 177 MSMVRGGKAEKTNWVMHQYHL 197
+ + KT+W+MH+Y L
Sbjct: 122 AG--KAPRGVKTDWIMHEYRL 140
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 58 LPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQD 117
LP G +F P+D+E++ L + + F + I +D + P LP
Sbjct: 17 LPPGFRFYPTDEELMVQYLCRKAAG----YDFSLQLIAEID----LYKFDPWVLPNKALF 68
Query: 118 GSAAHFFYRAI-KAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLY 176
G +F+ + Y G+R R + G + W TG K + +G + G KK +V Y
Sbjct: 69 GEKEWYFFSPRDRKYPNGSRPNR-VAGSGY----WKATGTDKIISTEGQRVGIKKALVFY 123
Query: 177 MSMVRGGKAEKTNWVMHQYHL----GTEEDEKDRDYVISKISYQQQQAK 221
+ + K KTNW+MH+Y L K D+V+ +I +Q A+
Sbjct: 124 IG--KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)
Query: 58 LPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQD 117
LP G +F P+D+E++ L + + F + I +D + P LP
Sbjct: 20 LPPGFRFYPTDEELMVQYLCRKAAG----YDFSLQLIAEID----LYKFDPWVLPNKALF 71
Query: 118 GSAAHFFYRAI-KAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLY 176
G +F+ + Y G+R R + G + W TG K + +G + G KK +V Y
Sbjct: 72 GEKEWYFFSPRDRKYPNGSRPNR-VAGSGY----WKATGTDKIISTEGQRVGIKKALVFY 126
Query: 177 MSMVRGGKAEKTNWVMHQYHL----GTEEDEKDRDYVISKISYQQQQAK 221
+ + K KTNW+MH+Y L K D+V+ +I +Q A+
Sbjct: 127 IG--KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 173
>pdb|2WWW|A Chain A, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|B Chain B, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|C Chain C, Crystal Structure Of Methylmalonic Acidemia Type A Protein
pdb|2WWW|D Chain D, Crystal Structure Of Methylmalonic Acidemia Type A Protein
Length = 349
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 72 IWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDGSAAHFFYRAIKA 130
+W+L+ ++ LE HP + E IP ++Q + L G G AA F +A K+
Sbjct: 298 MWNLIQESVLEHFRTHPTVREQIPLLEQ---------KVLIGALSPGLAADFLLKAFKS 347
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,812,911
Number of Sequences: 62578
Number of extensions: 679857
Number of successful extensions: 1101
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 8
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)