Query 014445
Match_columns 424
No_of_seqs 186 out of 941
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014445.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014445hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 6.3E-51 2.1E-55 374.8 13.4 152 52-218 9-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.4E-51 2.2E-55 373.7 11.2 152 53-219 12-168 (171)
3 1e8j_A Rubredoxin; iron-sulfur 29.9 29 0.001 25.5 2.3 28 37-65 4-31 (52)
4 2f9y_B Acetyl-coenzyme A carbo 25.7 26 0.00088 34.2 1.8 45 33-77 21-66 (304)
5 3h0g_L DNA-directed RNA polyme 24.8 31 0.0011 26.6 1.7 16 31-46 33-48 (63)
6 2v3b_B Rubredoxin 2, rubredoxi 24.6 26 0.0009 26.0 1.2 28 37-65 4-31 (55)
7 4ayb_P DNA-directed RNA polyme 20.8 36 0.0012 25.0 1.2 13 34-46 21-33 (48)
8 4rxn_A Rubredoxin; electron tr 20.5 28 0.00097 25.9 0.7 27 38-65 5-31 (54)
9 1dx8_A Rubredoxin; electron tr 20.4 43 0.0015 26.1 1.7 28 36-64 7-34 (70)
10 1yk4_A Rubredoxin, RD; electro 19.0 27 0.00093 25.7 0.3 26 38-64 4-29 (52)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=6.3e-51 Score=374.79 Aligned_cols=152 Identities=29% Similarity=0.498 Sum_probs=129.6
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHhhhcCCCCCCCccccccceeccCCCCCCCCCCCCCCCCCCC-CceEEEeccccc
Q 014445 52 AHEWPGLPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDG-SAAHFFYRAIKA 130 (424)
Q Consensus 52 ~~~~~~LPpGfRF~PTDeELI~~YL~kKi~G~~~p~Pli~~~Ip~vD~d~~Iy~~ePwdLPg~~~dG-~~wYFFs~r~kk 130 (424)
.+..++|||||||+|||||||.|||++|+.|.+ ++..+|+++| ||.+|||+||+.+..| .+||||+++.+|
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~----~~~~~I~evD----vy~~~Pw~Lp~~~~~g~~ewYFFs~r~~k 80 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQR----LPVPIIAEVD----LYKFDPWDLPERALFGAREWYFFTPRDRK 80 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCC----CSSSCCEECC----GGGSCGGGSGGGCSSCSSEEEEEEECCC-
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCC----CCcCeeeecc----cccCCchhhhhhhccCCceEEEEeccccc
Confidence 355789999999999999999999999999984 4557899998 8999999999987655 579999999999
Q ss_pred cCCCCcccccccCCCCCccEEeecCCCceEecCCeeeeeEEEEEeeeeccCCCCCCCcCeEEEEEEeCCCCC--------
Q 014445 131 YSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEED-------- 202 (424)
Q Consensus 131 y~~G~R~~R~t~~G~~g~G~Wk~tGk~K~I~~~G~vVG~KKtLvFY~gr~~g~kg~KT~WVMHEY~L~~~~~-------- 202 (424)
|++|.|++|+++ +||||+||++++|..+|.+||+||+||||.+++ +++.||+||||||+|.....
T Consensus 81 y~~g~R~nR~t~-----~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~--p~g~kT~WvMhEY~L~~~~~~~~~~~~~ 153 (174)
T 3ulx_A 81 YPNGSRPNRAAG-----NGYWKATGADKPVAPRGRTLGIKKALVFYAGKA--PRGVKTDWIMHEYRLADAGRAAAGAKKG 153 (174)
T ss_dssp ----CCSCEEET-----TEEEEECSCCEEECCSSSCCEEEEEEEEEESST--TSCEEEEEEEEEEEECSCC---------
T ss_pred cCCCCCceeecC-----CceEccCCCCcEEeeCCcEEEEEEEEEEecCCC--CCCCcCCeEEEEEEeCCCCCcccccccC
Confidence 999999999984 479999999999999999999999999999986 47899999999999997642
Q ss_pred -CCCCCEEEEEEEecCC
Q 014445 203 -EKDRDYVISKISYQQQ 218 (424)
Q Consensus 203 -~~~~e~VLCKIf~K~~ 218 (424)
...++|||||||+|+.
T Consensus 154 ~~~~~~wVlCrvf~K~~ 170 (174)
T 3ulx_A 154 SLRLDDWVLCRLYNKKN 170 (174)
T ss_dssp --CCSSEEEEEEEESCC
T ss_pred CCCCCCEEEEEEEEcCC
Confidence 1357999999999876
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.4e-51 Score=373.67 Aligned_cols=152 Identities=30% Similarity=0.487 Sum_probs=126.3
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHhhhcCCCCCCCccccccceeccCCCCCCCCCCCCCCCCCCC-CceEEEecccccc
Q 014445 53 HEWPGLPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDG-SAAHFFYRAIKAY 131 (424)
Q Consensus 53 ~~~~~LPpGfRF~PTDeELI~~YL~kKi~G~~~p~Pli~~~Ip~vD~d~~Iy~~ePwdLPg~~~dG-~~wYFFs~r~kky 131 (424)
..++.|||||||+|||||||.|||++|+.|. +++.++|+++| ||++|||+||+.+..| .+||||+++.++|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~----~~~~~~I~e~D----iy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~ 83 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGY----DFSLQLIAEID----LYKFDPWVLPNKALFGEKEWYFFSPRDRKY 83 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTC----CCSSCCSEECC----GGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCC----CCCCCeEeecc----cccCChhHhhchhhcCCccEEEEecccccc
Confidence 4578999999999999999999999999997 45568899998 8999999999987654 5899999999999
Q ss_pred CCCCcccccccCCCCCccEEeecCCCceEecCCeeeeeEEEEEeeeeccCCCCCCCcCeEEEEEEeCCCCC----CCCCC
Q 014445 132 STGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEED----EKDRD 207 (424)
Q Consensus 132 ~~G~R~~R~t~~G~~g~G~Wk~tGk~K~I~~~G~vVG~KKtLvFY~gr~~g~kg~KT~WVMHEY~L~~~~~----~~~~e 207 (424)
++|.|++|+++ +||||+||++++|..+|.+||+||+||||.+++ +++.||+|+||||+|..... ...++
T Consensus 84 ~~g~R~~R~t~-----~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~--p~g~kT~WvMhEY~l~~~~~~~~~~~~~~ 156 (171)
T 1ut7_A 84 PNGSRPNRVAG-----SGYWKATGTDKIISTEGQRVGIKKALVFYIGKA--PKGTKTNWIMHEYRLIEPSRRNGSTKLDD 156 (171)
T ss_dssp -----CCEEET-----TEEEEEEEEEEEEEETTEEEEEEEEEEEEESST--TSCEEEEEEEEEEEECCCC--------CC
T ss_pred CCCCcccccCC-----CCEEeccCCCceEEecCcEEEEEEEEEEEcCcC--CCCCcCCeEEEEEEcCCCccccCcccCCC
Confidence 99999999984 479999999999999999999999999999986 47899999999999997642 24689
Q ss_pred EEEEEEEecCCc
Q 014445 208 YVISKISYQQQQ 219 (424)
Q Consensus 208 ~VLCKIf~K~~~ 219 (424)
|||||||+|+.+
T Consensus 157 ~VlCrv~~k~~~ 168 (171)
T 1ut7_A 157 WVLCRIYKKQSS 168 (171)
T ss_dssp EEEEEEEECC--
T ss_pred EEEEEEEEcCCC
Confidence 999999999875
No 3
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.90 E-value=29 Score=25.51 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=20.6
Q ss_pred ccCCCCCccccCCCcCCCCCCCCCCceeC
Q 014445 37 KACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (424)
Q Consensus 37 ~~c~~c~~~id~s~v~~~~~~LPpGfRF~ 65 (424)
-.|..|+++-|... -...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~-Gdp~~gi~pGt~f~ 31 (52)
T 1e8j_A 4 YVCTVCGYEYDPAK-GDPDSGIKPGTKFE 31 (52)
T ss_dssp EECSSSCCCCCTTT-CCTTTTCCSSCCTT
T ss_pred EEeCCCCeEEcCCc-CCcccCcCCCCchH
Confidence 46999999988643 44456788888764
No 4
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=25.75 E-value=26 Score=34.20 Aligned_cols=45 Identities=13% Similarity=0.272 Sum_probs=34.0
Q ss_pred CCCCccCCCCCccccCCCcCCCCCCCC-CCceeCCChHHHHHHHHH
Q 014445 33 SNPTKACPNCHHVIDNSDVAHEWPGLP-RGVKFDPSDQEIIWHLLA 77 (424)
Q Consensus 33 ~~~~~~c~~c~~~id~s~v~~~~~~LP-pGfRF~PTDeELI~~YL~ 77 (424)
.+-+..||+|+..|-..++....--.| -|++|.++-.|.|..++-
T Consensus 21 ~~l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~arerI~~L~D 66 (304)
T 2f9y_B 21 EGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTARNRLHSLLD 66 (304)
T ss_dssp --CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCHHHHHHHHSC
T ss_pred HHHHHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCHHHHHHHHCC
Confidence 456889999999998876544224456 899999999999987663
No 5
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=24.81 E-value=31 Score=26.56 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=11.6
Q ss_pred ccCCCCccCCCCCccc
Q 014445 31 WKSNPTKACPNCHHVI 46 (424)
Q Consensus 31 ~~~~~~~~c~~c~~~i 46 (424)
.+.+....||+|+|+|
T Consensus 33 l~~~~~iRC~~CG~RI 48 (63)
T 3h0g_L 33 IQAKEVIRCRECGHRV 48 (63)
T ss_dssp CCSSSCCCCSSSCCCC
T ss_pred cCCCCceECCCCCcEE
Confidence 3455677888888885
No 6
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=24.61 E-value=26 Score=26.05 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=20.7
Q ss_pred ccCCCCCccccCCCcCCCCCCCCCCceeC
Q 014445 37 KACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (424)
Q Consensus 37 ~~c~~c~~~id~s~v~~~~~~LPpGfRF~ 65 (424)
-.|..|+++-|... -...-++|||-+|.
T Consensus 4 y~C~~CGyvYd~~~-Gdp~~gi~pGt~f~ 31 (55)
T 2v3b_B 4 WQCVVCGFIYDEAL-GLPEEGIPAGTRWE 31 (55)
T ss_dssp EEETTTCCEEETTT-CBTTTTBCTTCCGG
T ss_pred EEeCCCCeEECCCc-CCcccCcCCCCChh
Confidence 36999999988754 44556788887763
No 7
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.79 E-value=36 Score=25.05 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=11.4
Q ss_pred CCCccCCCCCccc
Q 014445 34 NPTKACPNCHHVI 46 (424)
Q Consensus 34 ~~~~~c~~c~~~i 46 (424)
-|...||.|+.+|
T Consensus 21 lP~IrCpyCGyri 33 (48)
T 4ayb_P 21 LPGVRCPYCGYKI 33 (48)
T ss_dssp CSSSCCTTTCCSC
T ss_pred CCCcccCccCcEE
Confidence 4899999999985
No 8
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.45 E-value=28 Score=25.92 Aligned_cols=27 Identities=26% Similarity=0.553 Sum_probs=20.2
Q ss_pred cCCCCCccccCCCcCCCCCCCCCCceeC
Q 014445 38 ACPNCHHVIDNSDVAHEWPGLPRGVKFD 65 (424)
Q Consensus 38 ~c~~c~~~id~s~v~~~~~~LPpGfRF~ 65 (424)
.|+.|+++-|... --..-++|||-+|.
T Consensus 5 ~C~vCGyvYd~~~-Gdp~~gi~pGt~fe 31 (54)
T 4rxn_A 5 TCTVCGYIYDPED-GDPDDGVNPGTDFK 31 (54)
T ss_dssp EETTTCCEECTTT-CBGGGTBCTTCCGG
T ss_pred ECCCCCeEECCCc-CCcccCcCCCCChh
Confidence 6999999998753 34455788888774
No 9
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.35 E-value=43 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.674 Sum_probs=21.0
Q ss_pred CccCCCCCccccCCCcCCCCCCCCCCcee
Q 014445 36 TKACPNCHHVIDNSDVAHEWPGLPRGVKF 64 (424)
Q Consensus 36 ~~~c~~c~~~id~s~v~~~~~~LPpGfRF 64 (424)
.-.|+.|+++-|... -...-++|||-+|
T Consensus 7 ~y~C~vCGyiYd~~~-Gdp~~gi~pGT~f 34 (70)
T 1dx8_A 7 KYECEACGYIYEPEK-GDKFAGIPPGTPF 34 (70)
T ss_dssp CEEETTTCCEECTTT-CCTTTTCCSSCCG
T ss_pred eEEeCCCCEEEcCCC-CCcccCcCCCCch
Confidence 457999999988644 4556678888776
No 10
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=19.05 E-value=27 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=18.9
Q ss_pred cCCCCCccccCCCcCCCCCCCCCCcee
Q 014445 38 ACPNCHHVIDNSDVAHEWPGLPRGVKF 64 (424)
Q Consensus 38 ~c~~c~~~id~s~v~~~~~~LPpGfRF 64 (424)
.|..|+++-|... -...-++|||-+|
T Consensus 4 ~C~~CGyvYd~~~-Gdp~~gi~pGt~f 29 (52)
T 1yk4_A 4 SCKICGYIYDEDE-GDPDNGISPGTKF 29 (52)
T ss_dssp EESSSSCEEETTT-CBGGGTBCTTCCG
T ss_pred EeCCCCeEECCCc-CCcccCcCCCCCH
Confidence 6999999988743 3445577888765
Done!