Query 014446
Match_columns 424
No_of_seqs 199 out of 1206
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:12:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.3 2.4E-12 5.1E-17 97.4 5.5 52 211-262 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.3 5.5E-12 1.2E-16 95.8 5.7 56 210-265 3-59 (60)
3 smart00353 HLH helix loop heli 99.2 1.5E-11 3.3E-16 91.6 5.9 51 216-266 1-52 (53)
4 KOG1318 Helix loop helix trans 98.7 6.3E-08 1.4E-12 100.4 9.3 59 208-266 230-290 (411)
5 cd04897 ACT_ACR_3 ACT domain-c 98.4 4.8E-06 1.1E-10 67.9 10.3 67 350-416 3-73 (75)
6 cd04895 ACT_ACR_1 ACT domain-c 98.3 4.4E-06 9.5E-11 67.6 9.8 67 350-416 3-69 (72)
7 KOG1319 bHLHZip transcription 98.3 9.4E-07 2E-11 83.1 5.6 63 210-272 61-128 (229)
8 cd04900 ACT_UUR-like_1 ACT dom 98.1 3.9E-05 8.4E-10 60.9 10.9 67 350-416 3-70 (73)
9 cd04927 ACT_ACR-like_2 Second 98.1 3.1E-05 6.8E-10 62.5 10.4 66 349-415 1-71 (76)
10 cd04896 ACT_ACR-like_3 ACT dom 98.1 4E-05 8.6E-10 62.6 10.0 65 350-415 2-72 (75)
11 KOG3960 Myogenic helix-loop-he 98.0 1.4E-05 3.1E-10 78.1 6.6 60 211-271 118-178 (284)
12 KOG2483 Upstream transcription 98.0 2.4E-05 5.2E-10 76.2 8.2 60 211-270 59-119 (232)
13 KOG4304 Transcriptional repres 97.9 8E-06 1.7E-10 80.3 4.2 58 209-266 30-93 (250)
14 cd04925 ACT_ACR_2 ACT domain-c 97.9 0.00014 3.1E-09 58.1 10.6 66 350-415 2-72 (74)
15 KOG3561 Aryl-hydrocarbon recep 97.8 1.6E-05 3.4E-10 88.7 4.8 52 212-264 21-75 (803)
16 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00045 9.8E-09 53.2 10.1 66 350-416 2-67 (70)
17 cd04926 ACT_ACR_4 C-terminal 97.5 0.0011 2.3E-08 52.7 9.6 66 350-416 3-68 (72)
18 cd04928 ACT_TyrKc Uncharacteri 97.4 0.0013 2.9E-08 52.8 9.3 64 350-415 3-67 (68)
19 KOG4029 Transcription factor H 97.4 0.00017 3.8E-09 69.5 4.5 61 210-270 108-170 (228)
20 KOG2588 Predicted DNA-binding 97.2 0.0002 4.3E-09 80.6 2.9 61 210-271 275-335 (953)
21 KOG0561 bHLH transcription fac 97.2 0.00043 9.2E-09 69.6 4.7 58 211-268 60-117 (373)
22 cd04873 ACT_UUR-ACR-like ACT d 97.1 0.0067 1.4E-07 46.1 10.2 66 350-416 2-67 (70)
23 PF13740 ACT_6: ACT domain; PD 97.0 0.014 2.9E-07 46.9 11.4 67 348-417 2-68 (76)
24 PRK05007 PII uridylyl-transfer 97.0 0.0041 8.9E-08 71.0 11.4 70 347-416 807-879 (884)
25 PLN03217 transcription factor 97.0 0.0016 3.5E-08 54.5 5.5 51 224-274 20-74 (93)
26 PF01842 ACT: ACT domain; Int 96.9 0.016 3.4E-07 43.5 10.0 61 350-414 2-64 (66)
27 PRK00275 glnD PII uridylyl-tra 96.8 0.012 2.5E-07 67.5 12.5 79 338-416 802-886 (895)
28 KOG4447 Transcription factor T 96.8 0.0014 3E-08 60.3 4.2 76 190-265 53-132 (173)
29 PRK04374 PII uridylyl-transfer 96.7 0.016 3.5E-07 66.2 12.7 78 338-415 784-866 (869)
30 cd04893 ACT_GcvR_1 ACT domains 96.7 0.023 4.9E-07 45.7 10.0 66 349-417 2-67 (77)
31 PRK01759 glnD PII uridylyl-tra 96.6 0.012 2.7E-07 66.9 10.7 68 348-415 783-853 (854)
32 PRK03381 PII uridylyl-transfer 96.5 0.019 4.1E-07 64.8 11.4 66 348-415 707-772 (774)
33 PF13291 ACT_4: ACT domain; PD 96.5 0.05 1.1E-06 43.4 10.8 50 348-397 6-57 (80)
34 cd04869 ACT_GcvR_2 ACT domains 96.5 0.033 7.2E-07 44.2 9.7 66 351-418 2-73 (81)
35 PRK05092 PII uridylyl-transfer 96.5 0.024 5.2E-07 65.1 12.3 79 338-416 831-915 (931)
36 PRK03381 PII uridylyl-transfer 96.4 0.02 4.4E-07 64.5 11.3 79 338-416 588-667 (774)
37 cd04872 ACT_1ZPV ACT domain pr 96.4 0.014 3.1E-07 47.7 7.6 69 349-418 2-70 (88)
38 cd04875 ACT_F4HF-DF N-terminal 96.4 0.031 6.8E-07 44.1 8.9 68 350-417 1-69 (74)
39 PRK00194 hypothetical protein; 96.4 0.019 4E-07 47.0 7.8 70 348-418 3-72 (90)
40 KOG3910 Helix loop helix trans 96.3 0.013 2.8E-07 62.5 8.0 57 210-268 525-585 (632)
41 cd04870 ACT_PSP_1 CT domains f 96.2 0.044 9.5E-07 43.6 9.1 67 350-418 1-67 (75)
42 TIGR01693 UTase_glnD [Protein- 96.1 0.036 7.9E-07 62.9 11.3 70 347-416 667-741 (850)
43 TIGR01693 UTase_glnD [Protein- 96.1 0.035 7.6E-07 63.1 11.0 67 348-414 779-848 (850)
44 PRK05007 PII uridylyl-transfer 96.0 0.047 1E-06 62.5 11.5 78 338-415 689-772 (884)
45 cd04887 ACT_MalLac-Enz ACT_Mal 96.0 0.045 9.8E-07 42.5 8.0 61 351-413 2-63 (74)
46 PRK03059 PII uridylyl-transfer 96.0 0.061 1.3E-06 61.4 12.0 66 347-415 785-854 (856)
47 PRK01759 glnD PII uridylyl-tra 95.7 0.081 1.8E-06 60.4 11.8 78 338-415 665-748 (854)
48 COG2844 GlnD UTP:GlnB (protein 95.6 0.035 7.7E-07 62.6 8.1 76 338-414 779-856 (867)
49 cd04886 ACT_ThrD-II-like C-ter 95.5 0.1 2.2E-06 39.2 8.0 61 351-413 1-66 (73)
50 PRK03059 PII uridylyl-transfer 95.4 0.11 2.5E-06 59.3 11.4 68 347-415 677-749 (856)
51 PRK05092 PII uridylyl-transfer 95.2 0.15 3.3E-06 58.7 11.8 78 338-415 720-804 (931)
52 cd04888 ACT_PheB-BS C-terminal 95.0 0.11 2.4E-06 40.4 7.1 63 350-413 2-65 (76)
53 PRK00275 glnD PII uridylyl-tra 94.9 0.18 3.9E-06 58.0 11.2 69 347-415 703-777 (895)
54 PRK04435 hypothetical protein; 94.7 0.17 3.6E-06 46.1 8.4 69 344-413 65-134 (147)
55 cd02116 ACT ACT domains are co 94.6 0.19 4.2E-06 34.1 6.7 35 351-385 1-35 (60)
56 PRK04374 PII uridylyl-transfer 94.1 0.28 6E-06 56.3 10.2 69 347-415 689-759 (869)
57 cd04894 ACT_ACR-like_1 ACT dom 93.7 0.38 8.2E-06 38.6 7.2 65 350-414 2-67 (69)
58 cd04876 ACT_RelA-SpoT ACT dom 93.6 0.96 2.1E-05 32.4 9.0 47 351-397 1-48 (71)
59 cd04881 ACT_HSDH-Hom ACT_HSDH_ 93.5 0.68 1.5E-05 35.2 8.5 47 349-395 1-49 (79)
60 cd04880 ACT_AAAH-PDT-like ACT 93.3 0.41 9E-06 37.7 7.2 62 352-413 3-66 (75)
61 cd04877 ACT_TyrR N-terminal AC 93.2 0.25 5.4E-06 39.0 5.8 45 350-397 2-46 (74)
62 cd04874 ACT_Af1403 N-terminal 92.5 0.92 2E-05 34.0 7.8 59 350-412 2-61 (72)
63 cd04878 ACT_AHAS N-terminal AC 92.4 0.85 1.8E-05 34.0 7.5 47 350-396 2-50 (72)
64 PRK13011 formyltetrahydrofolat 92.4 0.76 1.7E-05 46.2 9.3 71 348-418 7-77 (286)
65 cd04884 ACT_CBS C-terminal ACT 92.2 0.92 2E-05 35.4 7.7 62 351-414 2-66 (72)
66 cd04905 ACT_CM-PDT C-terminal 92.1 1.6 3.4E-05 34.9 9.1 60 350-411 3-63 (80)
67 PRK08577 hypothetical protein; 92.0 1.4 3E-05 39.2 9.5 65 348-413 56-122 (136)
68 KOG3898 Transcription factor N 91.9 0.17 3.6E-06 50.2 3.9 57 208-264 69-126 (254)
69 cd04879 ACT_3PGDH-like ACT_3PG 91.9 0.99 2.1E-05 33.5 7.3 58 351-413 2-61 (71)
70 cd04903 ACT_LSD C-terminal ACT 91.9 0.9 2E-05 33.9 7.1 59 350-413 1-61 (71)
71 KOG3560 Aryl-hydrocarbon recep 91.9 0.1 2.2E-06 56.6 2.4 42 218-259 32-75 (712)
72 PRK06027 purU formyltetrahydro 91.6 1.1 2.3E-05 45.1 9.3 69 348-417 6-76 (286)
73 PRK13010 purU formyltetrahydro 91.5 0.88 1.9E-05 45.9 8.5 72 348-419 9-82 (289)
74 TIGR00655 PurU formyltetrahydr 91.0 1.1 2.4E-05 45.0 8.7 66 350-416 2-70 (280)
75 PRK07334 threonine dehydratase 91.0 1 2.3E-05 46.9 8.8 65 347-413 325-394 (403)
76 cd04882 ACT_Bt0572_2 C-termina 90.9 1.1 2.5E-05 33.4 6.7 56 351-413 2-59 (65)
77 cd04908 ACT_Bt0572_1 N-termina 90.1 2.7 5.9E-05 32.3 8.4 57 350-413 3-59 (66)
78 cd04929 ACT_TPH ACT domain of 90.0 1.2 2.6E-05 36.0 6.6 45 354-398 6-51 (74)
79 cd04883 ACT_AcuB C-terminal AC 90.0 3.7 8E-05 31.4 9.1 59 350-413 3-63 (72)
80 cd04904 ACT_AAAH ACT domain of 89.3 2.1 4.6E-05 34.1 7.5 47 352-398 4-51 (74)
81 cd04909 ACT_PDH-BS C-terminal 89.2 2.2 4.9E-05 32.6 7.3 35 350-384 3-37 (69)
82 cd04931 ACT_PAH ACT domain of 88.6 2.7 5.9E-05 35.3 7.9 62 350-414 16-78 (90)
83 cd04889 ACT_PDH-BS-like C-term 87.0 2.8 6.2E-05 30.9 6.4 45 351-395 1-46 (56)
84 PF05088 Bac_GDH: Bacterial NA 87.0 3.6 7.9E-05 50.1 10.5 73 347-419 488-565 (1528)
85 COG2844 GlnD UTP:GlnB (protein 86.7 4.1 9E-05 46.6 10.1 67 337-403 673-740 (867)
86 CHL00100 ilvH acetohydroxyacid 86.1 3.7 8E-05 38.7 8.0 68 350-418 4-71 (174)
87 PRK13562 acetolactate synthase 85.6 2.7 5.9E-05 35.4 6.2 64 350-415 4-69 (84)
88 KOG3558 Hypoxia-inducible fact 85.6 0.83 1.8E-05 51.0 4.0 45 215-259 50-96 (768)
89 cd04901 ACT_3PGDH C-terminal A 85.4 0.87 1.9E-05 34.6 3.0 58 351-413 2-59 (69)
90 PRK11589 gcvR glycine cleavage 84.4 2.7 5.9E-05 40.0 6.4 66 347-415 7-72 (190)
91 cd04902 ACT_3PGDH-xct C-termin 84.2 3.2 6.9E-05 31.6 5.6 58 351-413 2-61 (73)
92 KOG3559 Transcriptional regula 83.8 0.95 2.1E-05 47.9 3.3 44 217-260 7-52 (598)
93 TIGR00119 acolac_sm acetolacta 83.7 4.2 9E-05 37.7 7.2 63 350-415 3-67 (157)
94 PRK11152 ilvM acetolactate syn 83.6 6.4 0.00014 32.3 7.4 62 350-415 5-68 (76)
95 PRK06737 acetolactate synthase 83.2 4.2 9.1E-05 33.4 6.2 62 350-414 4-67 (76)
96 cd04885 ACT_ThrD-I Tandem C-te 83.1 7 0.00015 30.3 7.2 59 352-413 2-61 (68)
97 COG3830 ACT domain-containing 82.7 2.9 6.3E-05 35.6 5.2 69 349-418 4-72 (90)
98 PRK11895 ilvH acetolactate syn 82.5 5.2 0.00011 37.3 7.3 63 350-415 4-68 (161)
99 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.9 9.7 0.00021 28.4 7.2 59 350-415 3-64 (66)
100 COG0788 PurU Formyltetrahydrof 80.8 7 0.00015 39.6 7.9 69 347-415 6-75 (287)
101 COG4492 PheB ACT domain-contai 80.8 8 0.00017 35.5 7.6 66 347-413 71-137 (150)
102 cd04892 ACT_AK-like_2 ACT doma 78.8 14 0.00029 26.7 7.2 59 350-415 2-63 (65)
103 PRK10872 relA (p)ppGpp synthet 78.5 13 0.00029 42.3 10.2 64 348-413 666-731 (743)
104 PF13710 ACT_5: ACT domain; PD 77.9 8.4 0.00018 30.1 6.1 55 357-414 1-57 (63)
105 PRK00227 glnD PII uridylyl-tra 77.5 12 0.00026 42.4 9.4 67 349-416 547-614 (693)
106 cd04919 ACT_AK-Hom3_2 ACT doma 77.3 15 0.00033 27.5 7.3 59 350-415 3-64 (66)
107 PRK11092 bifunctional (p)ppGpp 76.8 16 0.00035 41.4 10.2 51 348-398 626-677 (702)
108 TIGR00691 spoT_relA (p)ppGpp s 76.7 16 0.00035 41.2 10.2 51 348-398 610-661 (683)
109 KOG4447 Transcription factor T 75.5 2.6 5.7E-05 39.2 3.0 46 218-263 29-74 (173)
110 cd04937 ACT_AKi-DapG-BS_2 ACT 75.0 16 0.00035 27.9 6.9 56 351-415 4-62 (64)
111 cd04930 ACT_TH ACT domain of t 74.4 18 0.00038 31.8 7.8 48 351-398 44-92 (115)
112 PRK08198 threonine dehydratase 74.2 17 0.00036 37.9 8.9 67 345-413 324-395 (404)
113 cd04916 ACT_AKiii-YclM-BS_2 AC 72.9 21 0.00046 26.5 7.1 59 350-415 3-64 (66)
114 cd04918 ACT_AK1-AT_2 ACT domai 72.1 21 0.00045 27.4 7.0 52 357-415 12-63 (65)
115 cd04906 ACT_ThrD-I_1 First of 72.0 30 0.00064 28.2 8.2 62 349-413 2-64 (85)
116 PRK11589 gcvR glycine cleavage 71.7 29 0.00063 33.1 9.2 68 349-418 96-169 (190)
117 cd04924 ACT_AK-Arch_2 ACT doma 70.5 31 0.00067 25.5 7.5 59 350-415 3-64 (66)
118 PRK08178 acetolactate synthase 70.0 22 0.00048 30.6 7.2 63 348-414 8-72 (96)
119 cd04915 ACT_AK-Ectoine_2 ACT d 65.7 34 0.00074 26.5 7.0 51 358-415 14-64 (66)
120 TIGR01127 ilvA_1Cterm threonin 64.3 32 0.00069 35.4 8.4 67 345-413 302-373 (380)
121 KOG4395 Transcription factor A 62.6 14 0.00029 37.2 5.0 56 211-266 174-230 (285)
122 PRK06382 threonine dehydratase 62.6 36 0.00078 35.6 8.6 67 345-413 327-398 (406)
123 KOG3582 Mlx interactors and re 62.1 13 0.00028 42.0 5.3 62 210-271 650-714 (856)
124 cd04932 ACT_AKiii-LysC-EC_1 AC 60.5 78 0.0017 25.4 8.4 55 356-417 12-67 (75)
125 PRK11899 prephenate dehydratas 58.7 56 0.0012 32.9 8.8 63 350-414 196-259 (279)
126 cd04868 ACT_AK-like ACT domain 58.7 40 0.00086 23.5 5.8 26 358-383 13-38 (60)
127 PRK15385 magnesium transport p 57.1 81 0.0017 31.1 9.3 66 347-412 141-210 (225)
128 cd04920 ACT_AKiii-DAPDC_2 ACT 57.1 60 0.0013 24.9 6.9 50 357-415 12-61 (63)
129 PRK08526 threonine dehydratase 56.2 55 0.0012 34.5 8.7 67 345-413 323-394 (403)
130 cd04923 ACT_AK-LysC-DapG-like_ 55.2 78 0.0017 22.9 7.1 50 357-415 12-61 (63)
131 cd04890 ACT_AK-like_1 ACT doma 54.1 52 0.0011 24.5 6.1 25 357-381 12-36 (62)
132 cd04933 ACT_AK1-AT_1 ACT domai 52.4 1E+02 0.0023 25.1 7.9 42 350-395 3-47 (78)
133 cd04912 ACT_AKiii-LysC-EC-like 52.4 71 0.0015 25.2 6.8 31 350-380 3-36 (75)
134 cd04934 ACT_AK-Hom3_1 CT domai 51.4 89 0.0019 25.0 7.3 42 350-395 3-47 (73)
135 cd04921 ACT_AKi-HSDH-ThrA-like 51.3 94 0.002 24.1 7.4 60 350-416 3-65 (80)
136 PRK00227 glnD PII uridylyl-tra 50.7 24 0.00052 40.0 5.2 59 349-415 632-690 (693)
137 cd04913 ACT_AKii-LysC-BS-like_ 50.3 1E+02 0.0022 22.8 7.3 40 356-395 10-50 (75)
138 PF02120 Flg_hook: Flagellar h 49.3 66 0.0014 25.6 6.3 47 338-384 27-79 (85)
139 cd04936 ACT_AKii-LysC-BS-like_ 48.6 1E+02 0.0022 22.3 7.2 50 357-415 12-61 (63)
140 COG0317 SpoT Guanosine polypho 47.7 45 0.00098 38.0 6.7 50 348-397 627-677 (701)
141 COG4747 ACT domain-containing 41.7 1.2E+02 0.0027 27.5 7.2 41 350-390 5-45 (142)
142 TIGR00656 asp_kin_monofn aspar 41.6 1.3E+02 0.0028 31.2 8.5 63 344-415 333-398 (401)
143 PRK06291 aspartate kinase; Pro 40.9 1.2E+02 0.0025 32.5 8.3 68 341-415 391-461 (465)
144 cd04907 ACT_ThrD-I_2 Second of 40.4 1.8E+02 0.0039 23.8 7.6 60 348-413 1-63 (81)
145 PRK11898 prephenate dehydratas 40.2 1.3E+02 0.0029 30.2 8.2 49 350-398 198-248 (283)
146 PRK10622 pheA bifunctional cho 40.0 1.2E+02 0.0025 32.1 8.0 60 353-414 302-362 (386)
147 TIGR01268 Phe4hydrox_tetr phen 39.5 1.1E+02 0.0024 33.1 7.8 49 350-398 18-67 (436)
148 PRK06635 aspartate kinase; Rev 39.3 1.4E+02 0.003 31.0 8.3 52 344-395 258-311 (404)
149 PRK08210 aspartate kinase I; R 38.7 1.2E+02 0.0026 31.6 7.8 66 341-415 332-400 (403)
150 PLN02551 aspartokinase 37.8 1.5E+02 0.0033 32.5 8.7 67 342-415 439-507 (521)
151 COG0440 IlvH Acetolactate synt 37.5 91 0.002 29.4 6.0 65 350-417 6-72 (163)
152 cd04935 ACT_AKiii-DAPDC_1 ACT 37.2 2.1E+02 0.0045 22.9 7.4 36 356-395 12-47 (75)
153 PF13840 ACT_7: ACT domain ; P 37.2 56 0.0012 25.3 4.0 32 349-380 7-42 (65)
154 PRK00907 hypothetical protein; 36.2 1.3E+02 0.0027 25.7 6.2 63 348-412 17-83 (92)
155 PF02344 Myc-LZ: Myc leucine z 35.8 38 0.00082 23.7 2.4 19 217-235 11-29 (32)
156 PRK06291 aspartate kinase; Pro 35.8 1.7E+02 0.0036 31.4 8.5 66 344-416 317-385 (465)
157 PRK07431 aspartate kinase; Pro 35.7 1.4E+02 0.003 32.8 8.1 67 340-415 340-409 (587)
158 TIGR00656 asp_kin_monofn aspar 34.7 1.8E+02 0.004 30.0 8.4 67 342-415 254-323 (401)
159 PRK09034 aspartate kinase; Rev 32.4 1.9E+02 0.0042 30.9 8.3 68 341-415 378-448 (454)
160 PRK09436 thrA bifunctional asp 32.2 1.9E+02 0.0042 33.4 8.8 68 342-416 390-460 (819)
161 COG0527 LysC Aspartokinases [A 31.8 2.4E+02 0.0052 30.4 8.9 67 341-416 376-445 (447)
162 cd04917 ACT_AKiii-LysC-EC_2 AC 31.3 2.3E+02 0.0049 21.3 7.4 57 350-415 3-62 (64)
163 PRK07431 aspartate kinase; Pro 31.0 2.4E+02 0.0053 31.0 9.0 66 342-416 513-581 (587)
164 PRK06635 aspartate kinase; Rev 30.8 2E+02 0.0043 29.9 7.9 65 342-415 334-401 (404)
165 PRK02047 hypothetical protein; 30.3 1.8E+02 0.0039 24.5 6.1 62 349-412 17-82 (91)
166 PRK08639 threonine dehydratase 30.2 2.2E+02 0.0049 30.0 8.3 67 345-413 333-401 (420)
167 TIGR01270 Trp_5_monoox tryptop 29.6 1.8E+02 0.0039 31.8 7.4 48 351-398 34-83 (464)
168 PRK03094 hypothetical protein; 28.4 91 0.002 26.1 3.9 52 361-415 9-79 (80)
169 TIGR02079 THD1 threonine dehyd 28.2 2.6E+02 0.0057 29.4 8.4 66 346-413 323-390 (409)
170 PRK00341 hypothetical protein; 28.1 1.8E+02 0.0038 24.6 5.7 61 349-412 18-82 (91)
171 PRK08841 aspartate kinase; Val 27.8 2.1E+02 0.0046 30.1 7.6 65 343-416 313-377 (392)
172 COG3978 Acetolactate synthase 27.7 3.5E+02 0.0075 23.0 7.2 63 350-416 5-69 (86)
173 COG2061 ACT-domain-containing 27.3 2.9E+02 0.0063 26.2 7.4 49 349-397 6-57 (170)
174 cd04910 ACT_AK-Ectoine_1 ACT d 27.1 2.8E+02 0.0061 22.5 6.5 51 358-415 14-64 (71)
175 PF03698 UPF0180: Uncharacteri 26.9 1.3E+02 0.0027 25.2 4.6 55 361-415 9-79 (80)
176 cd04891 ACT_AK-LysC-DapG-like_ 26.8 2.3E+02 0.0049 19.9 5.9 39 356-394 9-48 (61)
177 COG0077 PheA Prephenate dehydr 26.6 2.9E+02 0.0062 28.2 7.9 61 351-413 197-258 (279)
178 PRK09977 putative Mg(2+) trans 25.8 5.2E+02 0.011 25.2 9.3 65 345-413 141-205 (215)
179 PRK09224 threonine dehydratase 25.8 4.1E+02 0.0088 29.0 9.5 65 346-413 326-391 (504)
180 COG2716 GcvR Glycine cleavage 25.2 2.3E+02 0.005 27.1 6.5 71 348-418 92-166 (176)
181 cd04898 ACT_ACR-like_4 ACT dom 24.6 1.7E+02 0.0038 24.4 4.9 63 352-414 4-73 (77)
182 cd04871 ACT_PSP_2 ACT domains 24.5 85 0.0018 25.7 3.2 63 351-416 2-74 (84)
183 PLN02551 aspartokinase 24.4 3E+02 0.0065 30.3 8.2 35 346-380 364-401 (521)
184 TIGR00657 asp_kinases aspartat 24.2 3.4E+02 0.0074 28.6 8.4 66 341-415 371-439 (441)
185 PRK04998 hypothetical protein; 23.8 2.2E+02 0.0048 23.6 5.5 62 349-412 16-79 (88)
186 COG2716 GcvR Glycine cleavage 23.2 75 0.0016 30.3 2.9 48 348-397 5-52 (176)
187 TIGR01124 ilvA_2Cterm threonin 22.8 4E+02 0.0087 29.1 8.7 64 346-413 323-387 (499)
188 PRK12483 threonine dehydratase 22.3 5.1E+02 0.011 28.6 9.4 63 346-412 343-407 (521)
189 PLN02317 arogenate dehydratase 21.4 4E+02 0.0086 28.4 8.1 44 355-398 290-348 (382)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.32 E-value=2.4e-12 Score=97.38 Aligned_cols=52 Identities=33% Similarity=0.599 Sum_probs=48.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCC---CCCCCCccchHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 262 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~---~~~K~dKaSIL~eAI~YIk~Lq 262 (424)
+|..|+.+||+||.+||+.|..|+.+||.. ...|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999999985 4578999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.28 E-value=5.5e-12 Score=95.79 Aligned_cols=56 Identities=34% Similarity=0.581 Sum_probs=50.8
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCC-CCCCCccchHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSY-VQRGDQASIIGGAIEFVRELEQLL 265 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~-~~K~dKaSIL~eAI~YIk~Lq~~v 265 (424)
..+..|+.+||+||.+||..|..|+++||..+ ..|++|++||..||+||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999942 378999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.23 E-value=1.5e-11 Score=91.65 Aligned_cols=51 Identities=39% Similarity=0.548 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHccCCCCC-CCCCCccchHHHHHHHHHHHHHHHH
Q 014446 216 IAVERNRRKQMNEHLRVLRSLMPGSY-VQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 216 ~~aER~RR~kmn~~f~~LrsLvP~~~-~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
+.+||+||.+||+.|..|+++||... ..|.+|++||..||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999643 6789999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.68 E-value=6.3e-08 Score=100.37 Aligned_cols=59 Identities=31% Similarity=0.564 Sum_probs=50.9
Q ss_pred HhhhhcchhHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCccchHHHHHHHHHHHHHHHH
Q 014446 208 VESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSY--VQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 208 ~~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~--~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
..-+|.+|+++||+||++||+++..|..|||.+. ..|..|..||..+++||++||+..+
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q 290 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQ 290 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999841 1256699999999999999998776
No 5
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.35 E-value=4.8e-06 Score=67.91 Aligned_cols=67 Identities=13% Similarity=0.376 Sum_probs=57.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH----HHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA----DDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa----EeI~qaL~qaL~ 416 (424)
+|+|.|+.|||+|.+|..+|-.++++|.+|.|+|.++++.-+|.+.-..|.+++. +.|.++|..++.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999998777888864 455555555554
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.34 E-value=4.4e-06 Score=67.64 Aligned_cols=67 Identities=24% Similarity=0.416 Sum_probs=58.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+|+|.++.|+|+|.+|.++|.++||+|..|.|+|.++++.-+|.+.-..+.+++-.+..+.|++.|.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999998667788866666666666654
No 7
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.29 E-value=9.4e-07 Score=83.08 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=53.6
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCC-----CCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYV-----QRGDQASIIGGAIEFVRELEQLLQCLESQK 272 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~-----~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek 272 (424)
.+|..|.-+||+||+.||..+..|+.|||.+.. .|..||-||..+|+||.+|..++..-+.+.
T Consensus 61 rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 61 RRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999997421 266789999999999999999887766654
No 8
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=3.9e-05 Score=60.88 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=53.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.|.|+.++|+|.+|..+|..+||+|+.|.|.+. ++.++-+|.+.-..+..+..++..+.|.+.|.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 57889999999999999999999999999999888 68999999997544555544444445555443
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.12 E-value=3.1e-05 Score=62.47 Aligned_cols=66 Identities=20% Similarity=0.308 Sum_probs=52.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe-eCCEEEEEEEEEECCCCccC----HHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT-IEQTVLYSFNVKVASETRFT----ADDIASSVQQVF 415 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt-~~~~vl~tf~vKv~~~~~ls----aEeI~qaL~qaL 415 (424)
++|.|.|+.++|+|.+|..+|..+||+|++|.|++ .++.++-+|.+.-. +.... .++|.++|.+++
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-RELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999996 88999999999743 32332 334555555544
No 10
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.07 E-value=4e-05 Score=62.58 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=54.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE--eeCCEEEEEEEEEECCCCccC----HHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNIT--TIEQTVLYSFNVKVASETRFT----ADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS--t~~~~vl~tf~vKv~~~~~ls----aEeI~qaL~qaL 415 (424)
+|.|.|..|+|+|.+|.++|..+||+|..|.|+ |.++++.-+|.+. .++.+++ .+.|.++|.+++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~-~~g~kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ-SDGKKIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe-CCCCccCCHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999 9999999999994 4455564 345555665554
No 11
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.97 E-value=1.4e-05 Score=78.12 Aligned_cols=60 Identities=30% Similarity=0.406 Sum_probs=52.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHH-HccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVL-RSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQ 271 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~L-rsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~e 271 (424)
+|..-.+.||+|=+|+|+.|.+| |.-+++. .++.-|..||..||+||..||.-++++.+.
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NP-NQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNP-NQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-cccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46677899999999999999999 5556665 578899999999999999999999888654
No 12
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.97 E-value=2.4e-05 Score=76.21 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=50.0
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCC-ccchHHHHHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGD-QASIIGGAIEFVRELEQLLQCLES 270 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~d-KaSIL~eAI~YIk~Lq~~v~~Le~ 270 (424)
.|..|+.-||+||..|++.|..|+.+||.....+.. .++||..|+.||+.|+.+..+...
T Consensus 59 ~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 59 SRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHH
Confidence 477999999999999999999999999985333333 588999999999999987655443
No 13
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.93 E-value=8e-06 Score=80.32 Aligned_cols=58 Identities=22% Similarity=0.419 Sum_probs=50.3
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHccCCCC------CCCCCCccchHHHHHHHHHHHHHHHH
Q 014446 209 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGS------YVQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 209 ~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~------~~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
..+++.|-+.||+||.+||+.|..|+.|||.. ..+|++||.||.-|++|+++|+....
T Consensus 30 ~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 30 QYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 45677888999999999999999999999961 23688999999999999999998543
No 14
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.93 E-value=0.00014 Score=58.13 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=52.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECC-CCccCH----HHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVAS-ETRFTA----DDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~-~~~lsa----EeI~qaL~qaL 415 (424)
+|+|.++.++|+|.+|..+|..+|++|+.|.+.+.++.++-+|.+.-.. +..+.. +.|.++|.+++
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999999999987433 443433 34444444443
No 15
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.83 E-value=1.6e-05 Score=88.69 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=47.6
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHccCCCCCC---CCCCccchHHHHHHHHHHHHHH
Q 014446 212 RMTHIAVERNRRKQMNEHLRVLRSLMPGSYV---QRGDQASIIGGAIEFVRELEQL 264 (424)
Q Consensus 212 r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~---~K~dKaSIL~eAI~YIk~Lq~~ 264 (424)
|.+|+.+||+||+|||..+.+|.+|||.+ . -|+||..||..||.+|+.+++.
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~-~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTN-ASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcc-hhcccCchHHHHHHHHHHHHHHHhhh
Confidence 34799999999999999999999999985 4 6999999999999999999884
No 16
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.72 E-value=0.00045 Score=53.23 Aligned_cols=66 Identities=20% Similarity=0.326 Sum_probs=53.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.|.+..++|+|.+|+.+|.+++++|.++.+.+.++.++.+|.+.-..+.... ++..+.|.+.|.
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~-~~~~~~i~~~l~ 67 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLD-PERQEALRAALG 67 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCC-HHHHHHHHHHHH
Confidence 578999999999999999999999999999999988888999999865554443 344445555554
No 17
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.0011 Score=52.71 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=52.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++.++.+|.+.-.++..+. .+..++|++.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~-~~~~~~l~~~l~ 68 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVD-PKTIEAVRQEIG 68 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCC-HHHHHHHHHHhc
Confidence 467788999999999999999999999999999988888889998744444443 344455666554
No 18
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.43 E-value=0.0013 Score=52.79 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=53.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|-|.|+.++|++.+|..+|..+||+|+.|.|.+. ++.++-+|.|.-.++. ..+++.++|++++
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence 46788999999999999999999999999999865 6799999999843222 4677888887765
No 19
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.38 E-value=0.00017 Score=69.47 Aligned_cols=61 Identities=28% Similarity=0.384 Sum_probs=52.6
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCccchHHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSY--VQRGDQASIIGGAIEFVRELEQLLQCLES 270 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~--~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ 270 (424)
.++..++.+||+|=+.+|..|..||.+||... .+|..|..+|..||.||+.|++-++.-+.
T Consensus 108 ~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 108 AQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 34667888899999999999999999999854 46779999999999999999988765543
No 20
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.19 E-value=0.0002 Score=80.61 Aligned_cols=61 Identities=23% Similarity=0.498 Sum_probs=54.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQ 271 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~e 271 (424)
.+|.+|+..||+-|..||+++..|+.+||.. ..|..|..+|..||+||++|+...+.|+..
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~-~aKl~kSavLr~ai~~i~dl~~~nq~lk~~ 335 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGT-EAKLNKSAVLRKAIDYIEDLQGYNQKLKLE 335 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCcc-HhhhhhhhhHHHHHHHHHHhhccccccchh
Confidence 4689999999999999999999999999986 568999999999999999999866655543
No 21
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.17 E-value=0.00043 Score=69.58 Aligned_cols=58 Identities=24% Similarity=0.368 Sum_probs=50.0
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCL 268 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~L 268 (424)
+|..-+.-||+|=..||..|..||+|+|.....|..||.||..+.+||.+|+...-+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 3556678899999999999999999999855668899999999999999998865544
No 22
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.15 E-value=0.0067 Score=46.14 Aligned_cols=66 Identities=21% Similarity=0.365 Sum_probs=50.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.|.|+.++|+|.+|+.+|.+.++.|.++.+.+.++.....|.+.-.++... .++-.+.|.+.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~ 67 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALE 67 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHH
Confidence 47889999999999999999999999999999988777777888875443333 2344445555553
No 23
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.03 E-value=0.014 Score=46.85 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=53.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
.++|+|.++.|||++..|.++|-+.|.+|+.++.++.++.+...+.+.+.. -+.++|..+|.++...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE---DSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH---HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc---ccHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999988888888761 1456666666665443
No 24
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.03 E-value=0.0041 Score=70.96 Aligned_cols=70 Identities=17% Similarity=0.310 Sum_probs=59.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccC---HHHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFT---ADDIASSVQQVFS 416 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~ls---aEeI~qaL~qaL~ 416 (424)
.--.|+|.|..|+|+|.+|.++|.++||+|.+|.|+|.++++.-+|.|.-..+..++ .++|.++|..++.
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEALN 879 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHHh
Confidence 346899999999999999999999999999999999999999999999866666776 3455555555553
No 25
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.97 E-value=0.0016 Score=54.49 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHccCCCCCC-CCCCc---cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 224 KQMNEHLRVLRSLMPGSYV-QRGDQ---ASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 224 ~kmn~~f~~LrsLvP~~~~-~K~dK---aSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
++|++.+..|+.|+|.... ...+| +.+|.++..||+.|+.+|..|.++..+
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~ 74 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSE 74 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999997322 22344 449999999999999999999987765
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.89 E-value=0.016 Score=43.53 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=46.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC--EEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ--TVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~--~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.|.|.|+.++|+|.+|.++|-++|++|.++.+.+..+ .....+... . .-..+.+.++|+++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-D---EEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-E---GHGHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-C---CCCHHHHHHHHHcc
Confidence 5789999999999999999999999999999999877 222222221 1 23577777777765
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.80 E-value=0.012 Score=67.50 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=63.4
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH----HHHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA----DDIASSV 411 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa----EeI~qaL 411 (424)
+.|.+.-. ++...|.|.+..++|+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.++..++. ++|.++|
T Consensus 802 ~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L 881 (895)
T PRK00275 802 TQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAI 881 (895)
T ss_pred CEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH
Confidence 45555443 24578999999999999999999999999999999999999999999998655665543 4566677
Q ss_pred HHHHH
Q 014446 412 QQVFS 416 (424)
Q Consensus 412 ~qaL~ 416 (424)
.++|.
T Consensus 882 ~~~L~ 886 (895)
T PRK00275 882 CEQLD 886 (895)
T ss_pred HHHHh
Confidence 66664
No 28
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.80 E-value=0.0014 Score=60.28 Aligned_cols=76 Identities=25% Similarity=0.375 Sum_probs=59.4
Q ss_pred ccCCCCCCCCCC----CCChhHHhhhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHH
Q 014446 190 PEAKNKRKRPRA----IKTTEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLL 265 (424)
Q Consensus 190 ~~~k~~rkr~r~----~~~~~e~~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v 265 (424)
.++|+++|.-|. +..-+|-..++..|++.||+|-..+|+.|.+||.++|...+.|..|.-.|.-|..||-.|-+-+
T Consensus 53 a~gk~~~ktlr~~~~~~~~~dE~q~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 53 ADGKRGKKTLRIGTDSIQSLDELQKQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred CcccccccccccCCCchhhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 344555553332 2234466689999999999999999999999999999866778888889999999998886543
No 29
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.70 E-value=0.016 Score=66.18 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=61.6
Q ss_pred ceEEEEEeC--CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH---HHHHHHHH
Q 014446 338 ADVEVKLLG--LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA---DDIASSVQ 412 (424)
Q Consensus 338 peVEV~i~g--~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa---EeI~qaL~ 412 (424)
+.|.+.... +-..|.|.+..++|+|.+|..+|..+||+|+.|.|+|.+++++-+|.|.-.++..++. ++|.++|.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~ 863 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESARQALRDALC 863 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHHHHHHHHHH
Confidence 455554432 3578999999999999999999999999999999999999999999998555555543 45555555
Q ss_pred HHH
Q 014446 413 QVF 415 (424)
Q Consensus 413 qaL 415 (424)
.++
T Consensus 864 ~~l 866 (869)
T PRK04374 864 ACL 866 (869)
T ss_pred HHh
Confidence 554
No 30
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.67 E-value=0.023 Score=45.74 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=55.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
+.|.+.|+.++|+..+|.+.|-+.|..|+.++....++.++.-+.+.++ ..+.++|.++|..+-..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~---~~~~~~l~~~l~~~~~~ 67 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS---WDAIAKLEAALPGLARR 67 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec---cccHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999888777777655 23677777777765443
No 31
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.58 E-value=0.012 Score=66.94 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH---HHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA---DDIASSVQQVF 415 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa---EeI~qaL~qaL 415 (424)
-.+|.|.+..+||+|.+|.++|.++|++|..|.|+|.++++.-+|.|.-..|.+++. ++|.++|..++
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999999999999999998666667764 34444444443
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.49 E-value=0.019 Score=64.80 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
-..|.|.|..+||+|.+|..+|..+|++|++|.|+|.++.++-+|.|.-.++..++-+ .+.|+++|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHh
Confidence 4789999999999999999999999999999999999999999999986666666533 56666655
No 33
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.49 E-value=0.05 Score=43.36 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=42.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEEC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVA 397 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~ 397 (424)
.+.|+|.+..++|+|.+|..+|.+.++.|.+.++... ++.+...|.+++.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 3678999999999999999999999999999999985 5788888999987
No 34
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.47 E-value=0.033 Score=44.15 Aligned_cols=66 Identities=12% Similarity=0.204 Sum_probs=53.8
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC------CEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE------QTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~------~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
|.|.|+.++|++.+|-+.|.+.|++|.+.+..+.+ +.+...+.+.++. ..+.+++.++|..+-..+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~~ 73 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDDL 73 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999887 5555566666653 457888888887765543
No 35
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.47 E-value=0.024 Score=65.12 Aligned_cols=79 Identities=24% Similarity=0.298 Sum_probs=62.8
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccC----HHHHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFT----ADDIASSV 411 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~ls----aEeI~qaL 411 (424)
+.|.+.-. +....|.|.|..++|+|.+|..+|.++|++|.+|.|.|.++++.-+|.|.-.++..+. .++|.++|
T Consensus 831 ~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L 910 (931)
T PRK05092 831 PRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRAL 910 (931)
T ss_pred CEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHH
Confidence 44555433 2347899999999999999999999999999999999999999999999865565553 34566666
Q ss_pred HHHHH
Q 014446 412 QQVFS 416 (424)
Q Consensus 412 ~qaL~ 416 (424)
.++|.
T Consensus 911 ~~~L~ 915 (931)
T PRK05092 911 LAALA 915 (931)
T ss_pred HHHhc
Confidence 66653
No 36
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.44 E-value=0.02 Score=64.55 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=64.0
Q ss_pred ceEEEEEe-CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 338 ADVEVKLL-GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 338 peVEV~i~-g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+.|.+... .+.+.|.|.|+.++|++.+|..+|..+|++|+.|+|.+.++.++-+|.|.-..+.....+.|.++|.+++.
T Consensus 588 ~~v~~~~~~~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~~L~ 667 (774)
T PRK03381 588 VHVEIAPADPHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRRALD 667 (774)
T ss_pred CEEEEeeCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHHHHc
Confidence 34444322 35678999999999999999999999999999999999889999999998554544456778888887765
No 37
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.014 Score=47.71 Aligned_cols=69 Identities=17% Similarity=0.306 Sum_probs=57.0
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
+.|.+.|+.++|++..|.+.|-+.|++|++.+..+.++.+...+.+.++ +...+.++|..+|..+-..+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~~~~~~~~L~~~l~~l~~~~ 70 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-ESNLDFAELQEELEELGKEL 70 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-CCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999888877666777655 22466888888888766543
No 38
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.031 Score=44.06 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=49.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCC-ccCHHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASET-RFTADDIASSVQQVFSF 417 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~-~lsaEeI~qaL~qaL~~ 417 (424)
.|+|.|+.++|++.+|.+.|-++|+.|+..+..+....-...+.+++.-.. .++.+++.++|..+-..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 69 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999988643222233444443222 25788888888776543
No 39
>PRK00194 hypothetical protein; Validated
Probab=96.35 E-value=0.019 Score=46.97 Aligned_cols=70 Identities=16% Similarity=0.295 Sum_probs=55.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.|.|.|+.+||++.+|.+.|-+.|++|++.+..+.++.+...+.+... +.....++|.+.|.++-..+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~l~~l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS-ESKKDFAELKEELEELGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec-CCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999988877776666666655 22345778887777765443
No 40
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.29 E-value=0.013 Score=62.54 Aligned_cols=57 Identities=25% Similarity=0.306 Sum_probs=48.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCC----CccchHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRG----DQASIIGGAIEFVRELEQLLQCL 268 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~----dKaSIL~eAI~YIk~Lq~~v~~L 268 (424)
.+|+..++.||-|-+.||+.|.+|-.++-- -.|. -|.-||..|+.-|-.|+++|.+-
T Consensus 525 ERR~aNNARERlRVRDINeAfKELGRMCql--HlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 525 ERRMANNARERLRVRDINEAFKELGRMCQL--HLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHHhhhhhhhheehhhHHHHHHHHHHHHHH--hhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 678999999999999999999999877643 1233 46779999999999999999764
No 41
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.23 E-value=0.044 Score=43.57 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=56.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
+|.|.++.|||++.+|.++|-++|++|...+.++.++.+...+.+.+..+ .+.+++.++|..+...+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~--~~~~~l~~~l~~l~~~l 67 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS--ADSEALLKDLLFKAHEL 67 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC--CCHHHHHHHHHHHHHHc
Confidence 37888999999999999999999999999998898888767777776543 56888888888776553
No 42
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.14 E-value=0.036 Score=62.95 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=57.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE-eeCCEEEEEEEEEECCCCccCH----HHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT-TIEQTVLYSFNVKVASETRFTA----DDIASSVQQVFS 416 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS-t~~~~vl~tf~vKv~~~~~lsa----EeI~qaL~qaL~ 416 (424)
+...|.|.++.++|+|.+|..+|..+||+|+.|.|. +.++.++-+|.|+-..+..++. +.|.++|.++|.
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~ 741 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLA 741 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999 6788999999998766665543 345556666553
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.12 E-value=0.035 Score=63.07 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=56.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH---HHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA---DDIASSVQQV 414 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa---EeI~qaL~qa 414 (424)
-..|.|.|..+||+|.+|.++|..+|++|.++.|+|.++++.-+|.+....+..++. +.|.++|..+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~ 848 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAAS 848 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998766666653 4444444443
No 44
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.01 E-value=0.047 Score=62.49 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=60.6
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCH---HHHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTA---DDIASSV 411 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsa---EeI~qaL 411 (424)
+.|.+.-. .+...|.|.|+.++|+|.+|..+|..+||+|+.|.|.|.. +.++-+|.|.-.++..++. +.|.+.|
T Consensus 689 p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~~L 768 (884)
T PRK05007 689 PLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKAL 768 (884)
T ss_pred CeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 44555433 3568999999999999999999999999999999998775 5999999998665666653 3355666
Q ss_pred HHHH
Q 014446 412 QQVF 415 (424)
Q Consensus 412 ~qaL 415 (424)
.++|
T Consensus 769 ~~aL 772 (884)
T PRK05007 769 EQAL 772 (884)
T ss_pred HHHH
Confidence 6655
No 45
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.01 E-value=0.045 Score=42.55 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=47.2
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|+|.+..++|+|.+|+.+|.+.|..|.+.++.... +.+...|.+++.+... .+.|.++|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~--l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH--AETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH--HHHHHHHHhc
Confidence 78889999999999999999999999999988764 6766778888764322 3445555443
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.96 E-value=0.061 Score=61.43 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=53.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccC----HHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFT----ADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~ls----aEeI~qaL~qaL 415 (424)
+-..|.|.|+.++|+|.+|..+|..+||+|+.|.|+|.+++++-+|.|. +.... .+.|.++|.+++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~---~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID---GSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc---CCCCCCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999999999999999994 22232 345555555544
No 47
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.74 E-value=0.081 Score=60.42 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=60.2
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe-eCCEEEEEEEEEECCCCccCHH---HHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT-IEQTVLYSFNVKVASETRFTAD---DIASSV 411 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt-~~~~vl~tf~vKv~~~~~lsaE---eI~qaL 411 (424)
+.|.+.-. .+...|.|.|+.++|+|.+|..+|..+||+|+.|.|.| .++.++-+|.|.-.++..++.+ .|.++|
T Consensus 665 ~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~~~L 744 (854)
T PRK01759 665 LLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLEQAL 744 (854)
T ss_pred CEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence 44555433 35578999999999999999999999999999999977 7889999999985556656532 344555
Q ss_pred HHHH
Q 014446 412 QQVF 415 (424)
Q Consensus 412 ~qaL 415 (424)
.+++
T Consensus 745 ~~aL 748 (854)
T PRK01759 745 TKAL 748 (854)
T ss_pred HHHH
Confidence 5544
No 48
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.035 Score=62.56 Aligned_cols=76 Identities=21% Similarity=0.269 Sum_probs=61.2
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
|.|.+.-. .+.-+|+|.+..|+|+|..|-.+|..++|+|.+|.|+|++.++.-+|.+....+.+++ .++.+.+.+.
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~-~~~~q~l~~~ 856 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALN-AELRQSLLQR 856 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCC-HHHHHHHHHH
Confidence 55655433 2347899999999999999999999999999999999999999999999877777774 4444444443
No 49
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.49 E-value=0.1 Score=39.25 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=44.0
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-----CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-----EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-----~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|.|.++.++|.|.+|+++|.+.|++|.+...... .+.....|.+.+.+ .-..++|..+|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG--AEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4678899999999999999999999998887654 35555666776642 1224555555544
No 50
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.39 E-value=0.11 Score=59.28 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=53.9
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE-eeCCEEEEEEEEEECCCCccC----HHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT-TIEQTVLYSFNVKVASETRFT----ADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS-t~~~~vl~tf~vKv~~~~~ls----aEeI~qaL~qaL 415 (424)
+...|.|.|+.++|++.+|..+|..+||+|+.|.|. +.+|.++-+|.|.-..+. .. .+.|.++|.+++
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l 749 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVEHELAERL 749 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995 567899999999744333 33 344555555544
No 51
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.24 E-value=0.15 Score=58.69 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=59.9
Q ss_pred ceEEEEEe--CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe-eCCEEEEEEEEEECCCCccC----HHHHHHH
Q 014446 338 ADVEVKLL--GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT-IEQTVLYSFNVKVASETRFT----ADDIASS 410 (424)
Q Consensus 338 peVEV~i~--g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt-~~~~vl~tf~vKv~~~~~ls----aEeI~qa 410 (424)
+.|.++.. .+...|.|.|+.++|+|.+|..+|..+|++|+.|.|.+ .+++++-+|.|+-..+.... .+.|.++
T Consensus 720 ~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~~~ 799 (931)
T PRK05092 720 LATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLAKA 799 (931)
T ss_pred cEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHHHH
Confidence 45555443 25689999999999999999999999999999999987 57788899999855443332 4456666
Q ss_pred HHHHH
Q 014446 411 VQQVF 415 (424)
Q Consensus 411 L~qaL 415 (424)
|.+++
T Consensus 800 L~~~l 804 (931)
T PRK05092 800 IEDAL 804 (931)
T ss_pred HHHHH
Confidence 66655
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.03 E-value=0.11 Score=40.37 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=45.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.|.|.+..++|+|.+|+++|.+.+++|...+.... ++.....|.+.+.+.. ...++|..+|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~-~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN-GDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH-HHHHHHHHHHhc
Confidence 57888999999999999999999999999887654 3555567777764221 134555555543
No 53
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.92 E-value=0.18 Score=58.02 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=55.4
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE-eeCCEEEEEEEEEECCCCcc-C----HHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT-TIEQTVLYSFNVKVASETRF-T----ADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS-t~~~~vl~tf~vKv~~~~~l-s----aEeI~qaL~qaL 415 (424)
+...|.|.|+.++|+|.+|+.+|..+||+|+.|.|. +.+|.++-+|.|.-.++..+ . .+.|.++|.++|
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L 777 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEAL 777 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999985 55679999999985555543 2 344666666665
No 54
>PRK04435 hypothetical protein; Provisional
Probab=94.74 E-value=0.17 Score=46.08 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=52.6
Q ss_pred EeCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 344 LLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 344 i~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
..|+.+.|.+.+..++|+|.+|+++|.+.+++|+..+.+.. ++....+|.+.+.+ .....++|.++|++
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~-~~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS-MEGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC-hHHHHHHHHHHHHc
Confidence 35678899999999999999999999999999999887553 56666778887652 11245566665554
No 55
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.57 E-value=0.19 Score=34.09 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=31.2
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE 385 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~ 385 (424)
|.|.|+.++|.+.+|+.+|...++.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46888999999999999999999999999887654
No 56
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.06 E-value=0.28 Score=56.35 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=54.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe-eCCEEEEEEEEEECCCCcc-CHHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT-IEQTVLYSFNVKVASETRF-TADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt-~~~~vl~tf~vKv~~~~~l-saEeI~qaL~qaL 415 (424)
+...|.|.|+.++|++.+|..+|..+||+|+.|.|.+ .+|.++-+|.|.-..+... ..+.|.++|.++|
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l 759 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVL 759 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999997 5789999999974433211 2344555555555
No 57
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.65 E-value=0.38 Score=38.63 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=52.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECC-CCccCHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVAS-ETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~-~~~lsaEeI~qaL~qa 414 (424)
.|+|.|+.+.|+-.+|.+.+-+.||.|....+++.+...+..|-|.-.. ...+.-+-|+++|.++
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999887777775322 1234557777777654
No 58
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.57 E-value=0.96 Score=32.36 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=38.3
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEEC
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVA 397 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~ 397 (424)
|+|.|..++|.+.+|++.|.+.+++|.+..+...+ +.....|.+++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 46789999999999999999999999999887665 445455666654
No 59
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.47 E-value=0.68 Score=35.22 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=37.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEE
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVK 395 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vK 395 (424)
++|+|.+..++|.|.+|+..|.+.++.+...+..... +.....+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 4789999999999999999999999999998876553 4444455554
No 60
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.34 E-value=0.41 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=45.0
Q ss_pred EEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCC-CccCHHHHHHHHHH
Q 014446 352 KILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASE-TRFTADDIASSVQQ 413 (424)
Q Consensus 352 kI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~-~~lsaEeI~qaL~q 413 (424)
-+..+.++|.|.+|++.|.+.|+.+++.......+ .--|.|.+.+++. .....+++...|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34557799999999999999999999997776654 4457888887643 23344555555554
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.23 E-value=0.25 Score=39.05 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=37.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEEC
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVA 397 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~ 397 (424)
.|+|.|..++|+|.+|+.+|.+.+..+...++.+. +. ..|.+++.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~ 46 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTI 46 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEec
Confidence 47899999999999999999999999999998765 44 33555544
No 62
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.47 E-value=0.92 Score=34.03 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=41.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
.|.|.+..++|.|.+|+..|.+.++.|.+.+....+ +..... +.+.+. -..+++.++|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~--i~~~~~--~~~~~~~~~L~ 61 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIY--MELEGV--GDIEELVEELR 61 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEE--EEEecc--ccHHHHHHHHh
Confidence 477889999999999999999999999988877653 343333 444322 23445555544
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.44 E-value=0.85 Score=34.03 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=38.6
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEE
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKV 396 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv 396 (424)
+|.|.+..++|.|.+|+..|.+.++.|.+.+.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 47788899999999999999999999999987764 355556677764
No 64
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.43 E-value=0.76 Score=46.23 Aligned_cols=71 Identities=10% Similarity=0.089 Sum_probs=53.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.|.|.|+.++|+..+|.+.|-+++++|...+..+....-++++.+.+.-...++.++|.++|..+-..+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~~l 77 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAARF 77 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999987543322334555554333467888888888765543
No 65
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.24 E-value=0.92 Score=35.38 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=42.9
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--C-CEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--E-QTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~-~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
+.|.-+.+||.|.++++.|.+.|..|++...... + +.-...+++.++... ..+.|.++|.+.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~--~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRS--KENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecch--HHHHHHHHHhCc
Confidence 4566789999999999999999999999877665 2 333345555543222 256666666544
No 66
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=92.12 E-value=1.6 Score=34.87 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=43.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSV 411 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL 411 (424)
.|.+..+.++|.|.+|++.|.++|+.+++....... +.-.+.|.+..+.. ...+++.++|
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~--~~~~~~~~~l 63 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH--IEDPNVAEAL 63 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC--CCCHHHHHHH
Confidence 345556788999999999999999999999766654 35568888887643 3334444444
No 67
>PRK08577 hypothetical protein; Provisional
Probab=92.03 E-value=1.4 Score=39.16 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=48.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.+.|.|.+..++|+|.+|+++|.+.++++.+.+..+.. +.....|.+.+.+.. ...+++.+.|.+
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~-~~l~~l~~~L~~ 122 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSD-IDLEELEEELKK 122 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCch-hhHHHHHHHHHc
Confidence 68899999999999999999999999999988877654 444455677766431 234566665543
No 68
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=91.94 E-value=0.17 Score=50.23 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=48.8
Q ss_pred HhhhhcchhHHHHHHHHHHHHHHHHHHccCCC-CCCCCCCccchHHHHHHHHHHHHHH
Q 014446 208 VESQRMTHIAVERNRRKQMNEHLRVLRSLMPG-SYVQRGDQASIIGGAIEFVRELEQL 264 (424)
Q Consensus 208 ~~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~-~~~~K~dKaSIL~eAI~YIk~Lq~~ 264 (424)
...+|+.-+..||+|=-.+|+-|..||.++|. ....|+.|...|.-|-+||..|++-
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 34567888999999999999999999999993 3356889999999999999888764
No 69
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.93 E-value=0.99 Score=33.46 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=43.5
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
+.|.+..++|.+.+|+..|.+.++.|.+..+.... +.....|.+ .+ . ..++|.+.|+.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v--~~-~--~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV--DS-P--VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc--CC-C--CCHHHHHHHHc
Confidence 56788999999999999999999999999987754 555555655 22 2 35566666554
No 70
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.88 E-value=0.9 Score=33.88 Aligned_cols=59 Identities=15% Similarity=0.392 Sum_probs=41.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
+|.|.+..++|.|.+|+..|.+.++.|.+...... ++.....| .+.+. ..+++.++|++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i--~v~~~---~~~~~i~~l~~ 61 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI--EVDQP---IDEEVIEEIKK 61 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE--EeCCC---CCHHHHHHHHc
Confidence 36788899999999999999999999998887653 34433334 43322 45566666554
No 71
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=91.87 E-value=0.1 Score=56.64 Aligned_cols=42 Identities=24% Similarity=0.455 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHccCCCC--CCCCCCccchHHHHHHHHH
Q 014446 218 VERNRRKQMNEHLRVLRSLMPGS--YVQRGDQASIIGGAIEFVR 259 (424)
Q Consensus 218 aER~RR~kmn~~f~~LrsLvP~~--~~~K~dKaSIL~eAI~YIk 259 (424)
--++-|+++|..+..|.+|+|.. .++|.||.|||.=++.|++
T Consensus 32 PSKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 32 PSKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred cchhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34667899999999999999973 2789999999999999984
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.64 E-value=1.1 Score=45.14 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=52.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
.+.|.|.|+.|+|+...|.++|-++|++|+..+.++ .++.+.-.+.+.+. ....+.++|.++|..+-..
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~-~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGD-GLIFNLETLRADFAALAEE 76 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999 77743333344431 2234577787777766544
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.47 E-value=0.88 Score=45.92 Aligned_cols=72 Identities=11% Similarity=0.108 Sum_probs=51.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE--eeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHhh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT--TIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFIH 419 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS--t~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I~ 419 (424)
.+.|.|.|+.++|+..+|-+.|-+.|++|+.++-. +..+.++--+.+.......++.++|.++|..+-..+.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~ 82 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFD 82 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999999999999986 3333322111222112235678888888888766544
No 74
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.00 E-value=1.1 Score=44.99 Aligned_cols=66 Identities=8% Similarity=0.140 Sum_probs=51.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHH-HHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQ-VFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~q-aL~ 416 (424)
.|.|.|+.++|+...|-..|-+.|+.|+.++-+... +.++-.+.+.+. +..++.++|.++|.. +-.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAE 70 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999988754 554434444433 234678899888887 443
No 75
>PRK07334 threonine dehydratase; Provisional
Probab=90.99 E-value=1 Score=46.89 Aligned_cols=65 Identities=14% Similarity=0.267 Sum_probs=50.0
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-----CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-----EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-----~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
-.+.|+|.+..|+|+|.+|+.+|.+.+++|.+.++.+. ++.....|++++.+-. ..+.|..+|++
T Consensus 325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~--~L~~vi~~Lr~ 394 (403)
T PRK07334 325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAA--HLQEVIAALRA 394 (403)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 34899999999999999999999999999999998764 4676677888876311 24455555554
No 76
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.90 E-value=1.1 Score=33.36 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=39.5
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|.|.-+.++|.|.++++.|.+.|+.|.+....... +.... .+.++. .+.+.+.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v--~~~ve~-----~~~~~~~L~~ 59 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALL--IFRTED-----IEKAIEVLQE 59 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEE--EEEeCC-----HHHHHHHHHH
Confidence 56777899999999999999999999877664443 34433 344442 5566665554
No 77
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=90.07 E-value=2.7 Score=32.26 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=41.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.|.|..+.++|.|.+|+++|.+.|+.|.+.-+....+. -.+++...+ .+.+.+.|.+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~-----~~~~~~~L~~ 59 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD-----PDKAKEALKE 59 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC-----HHHHHHHHHH
Confidence 36677899999999999999999999999887666553 455555432 4455555543
No 78
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.03 E-value=1.2 Score=36.00 Aligned_cols=45 Identities=18% Similarity=0.315 Sum_probs=36.8
Q ss_pred EecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECC
Q 014446 354 LSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVAS 398 (424)
Q Consensus 354 ~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~ 398 (424)
..+.++|.|.+++..|+..|+.+.+...-...+ .--|.|.+.+++
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 336789999999999999999999988777643 345888888874
No 79
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.96 E-value=3.7 Score=31.42 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=42.3
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.|.|..+.++|.|.++++.|.+.++.|.+...... .+.....|.+... ..+++.++|.+
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~-----~~~~~~~~L~~ 63 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM-----NPRPIIEDLRR 63 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC-----CHHHHHHHHHH
Confidence 46777899999999999999999999988765443 2455555665532 24566666654
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.34 E-value=2.1 Score=34.06 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=38.6
Q ss_pred EEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECC
Q 014446 352 KILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVAS 398 (424)
Q Consensus 352 kI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~ 398 (424)
-+..+.++|.|.+|++.|...|+.+.+...-...+ .--|.|.+.+++
T Consensus 4 ~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 4 IFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34457789999999999999999999998887765 344888888874
No 81
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.22 E-value=2.2 Score=32.60 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI 384 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~ 384 (424)
.+.|.++.++|.|.+|+..|.+.+++|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 46788899999999999999999999998876654
No 82
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.57 E-value=2.7 Score=35.33 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=44.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.|-+..+.++|.|.+++..|...|+.+.+...-.... .--|.|.+.+++. ..+.+.++|..+
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~---~~~~~~~~l~~L 78 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK---SAPALDPIIKSL 78 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC---CCHHHHHHHHHH
Confidence 3444557789999999999999999999998877654 3348888888743 124444444433
No 83
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=87.02 E-value=2.8 Score=30.87 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=36.1
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEE
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVK 395 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vK 395 (424)
|.|..+.++|.|.+++++|.+.++.|.+..+.... +..+..|.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45678999999999999999999999888877665 5555555554
No 84
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=87.01 E-value=3.6 Score=50.14 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=61.7
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-----CEEEEEEEEEECCCCccCHHHHHHHHHHHHHHhh
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-----QTVLYSFNVKVASETRFTADDIASSVQQVFSFIH 419 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-----~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I~ 419 (424)
+.+.++|....++..|++||-.||++||.|+...--.+. ...+|.|.++...+..+..+++.+.+.++|..+-
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~~v~ 565 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFEAVW 565 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHHHHh
Confidence 458999999999999999999999999999988654332 2567999999887777889999999999998764
No 85
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.67 E-value=4.1 Score=46.62 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=56.1
Q ss_pred cceEEEEEeCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEEECCCCccC
Q 014446 337 LADVEVKLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVKVASETRFT 403 (424)
Q Consensus 337 ~peVEV~i~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vKv~~~~~ls 403 (424)
...+.++...+...|.|.|+.+|.++..|+.++...|++|+.|.|.+. +|.++-||.|.-.+|..+.
T Consensus 673 Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~ 740 (867)
T COG2844 673 LVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE 740 (867)
T ss_pred ceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc
Confidence 344555666677899999999999999999999999999999999865 6789999999866666555
No 86
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=86.06 E-value=3.7 Score=38.74 Aligned_cols=68 Identities=15% Similarity=0.283 Sum_probs=49.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.|.|...++||+|.+|...|-..|++|.+.++......-+..+++-+.++... .++|.+.|.+.+.-+
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~-ieqL~kQL~KLidVl 71 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT-IEQLTKQLYKLVNIL 71 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH-HHHHHHHHHHHhHhh
Confidence 57888899999999999999999999999999763332222333334444443 788888888776543
No 87
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=85.64 E-value=2.7 Score=35.36 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEE--EEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVL--YSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl--~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.+...+++|+|.+|..+|-..|+.|-+.++....+.-+ .+|++.++ ..-..+.|.+-|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~--d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ--DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC--CHHHHHHHHHHHhCCc
Confidence 5788889999999999999999999998888887654333 45555422 2234667776666544
No 88
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=85.61 E-value=0.83 Score=51.01 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHccCCC--CCCCCCCccchHHHHHHHHH
Q 014446 215 HIAVERNRRKQMNEHLRVLRSLMPG--SYVQRGDQASIIGGAIEFVR 259 (424)
Q Consensus 215 H~~aER~RR~kmn~~f~~LrsLvP~--~~~~K~dKaSIL~eAI~YIk 259 (424)
-.-|-|-||.|-|+-|+.|..+||- ...+..|||||+.=||.|++
T Consensus 50 SRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 50 SRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 3456799999999999999999984 22456899999999999985
No 89
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=85.36 E-value=0.87 Score=34.57 Aligned_cols=58 Identities=14% Similarity=0.233 Sum_probs=40.7
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|-+.+..++|++.+|+..|.+.++.+...+....++.....|.+.+. ..+++.++|++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~~ 59 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALRA 59 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 34577889999999999999999999777655444555555555433 44566666554
No 90
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.40 E-value=2.7 Score=40.01 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=50.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..++|.+.++.|+|+...|-++|-++|..++.++.+..++.+--.+.+.. ...+.++|..+|...-
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~---~~~~~~~le~~L~~l~ 72 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG---SWNAITLIESTLPLKG 72 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC---ChhHHHHHHHHHHhhh
Confidence 34788899999999999999999999999999999999986544444432 2235666666665543
No 91
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=84.17 E-value=3.2 Score=31.64 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=41.1
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
+-|..+.++|.+.+|.+.|.+.|+.|.+..+... ++.....|.++.. ...++.+.|.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~-----~~~~~~~~l~~ 61 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEP-----VPDEVLEELRA 61 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCC-----CCHHHHHHHHc
Confidence 3467889999999999999999999988876553 4566556655421 23455555544
No 92
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=83.82 E-value=0.95 Score=47.93 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCC--CCCCCccchHHHHHHHHHH
Q 014446 217 AVERNRRKQMNEHLRVLRSLMPGSY--VQRGDQASIIGGAIEFVRE 260 (424)
Q Consensus 217 ~aER~RR~kmn~~f~~LrsLvP~~~--~~K~dKaSIL~eAI~YIk~ 260 (424)
.+-|.||++-|-.|..|..++|-.. .+..||++|+.-|..|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 4569999999999999999999621 3468999999999999963
No 93
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=83.72 E-value=4.2 Score=37.72 Aligned_cols=63 Identities=16% Similarity=0.255 Sum_probs=47.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.|....++|.|.+|...|...|+.|.+..+...+ +....+|++.- ..-..+.|...|.+.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---CHHHHHHHHHHHhcCc
Confidence 577888999999999999999999999999988765 34445666652 2234666666666544
No 94
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=83.59 E-value=6.4 Score=32.32 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=46.4
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.|...++||.|.+|+..+..-|+.|-+.++.... +..-.++++ . + .-..+.|.+-|.+.+
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~-~-~~~i~ql~kQL~KL~ 68 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--A-S-ERPIDLLSSQLNKLV 68 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--C-C-CchHHHHHHHHhcCc
Confidence 577788999999999999999999999999988754 444345555 3 2 335777777666554
No 95
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=83.17 E-value=4.2 Score=33.43 Aligned_cols=62 Identities=10% Similarity=0.173 Sum_probs=44.0
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC--EEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ--TVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~--~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.|.|...+++|+|.+|..+|..-|+.|-+.++...++ ..-.++++. + + .-..+.|.+-|.+.
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~-~-~~~i~qi~kQL~KL 67 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C-T-ENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C-C-HHHHHHHHHHHhCC
Confidence 5788889999999999999999999999888886553 333455553 2 2 22455555555443
No 96
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.06 E-value=7 Score=30.33 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=39.5
Q ss_pred EEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 352 KILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 352 kI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
+|.-+.+||-|.++++.|.+ +.+|+..+....+ +.....+.+++.+.. ..++|.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDRE--DLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 56678999999999999999 9999988776543 233334455554321 35556655544
No 97
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=82.73 E-value=2.9 Score=35.63 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=53.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
++|.|.-..|+|+...|..+|-++|++|+..+=+..++++---+.+... .+......+...|.....++
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~-~~~~d~~~lr~~l~~~~~~l 72 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS-KEVVDFAALRDELAAEGKKL 72 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC-hHhccHHHHHHHHHHHHHhc
Confidence 6788999999999999999999999999999999899977555555543 23456666666666655543
No 98
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=82.48 E-value=5.2 Score=37.27 Aligned_cols=63 Identities=13% Similarity=0.245 Sum_probs=46.5
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.|....++|.|.+|...|...|+.|.+..+.... +....+|++. + ..-..+.|..-|.+.+
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~-~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G-DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C-CHHHHHHHHHHHhccc
Confidence 577888999999999999999999999999888765 4444566665 2 2224566666665544
No 99
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.93 E-value=9.7 Score=28.37 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=38.2
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|.+. ..++.+.+|+++|.+.++.|.-.+.+..+ .-.+|.+.- -..+++..+||+.|
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~-----~~~~~~~~~lh~~~ 64 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDE-----DDATKALRAVHERF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 4555553 46899999999999999999766554422 223444441 13455666776655
No 100
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=80.77 E-value=7 Score=39.57 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=49.5
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCC-CccCHHHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASE-TRFTADDIASSVQQVF 415 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~-~~lsaEeI~qaL~qaL 415 (424)
..+.+.|+|+.++|+...|-..|-+.|..|++++-.+...+-..-..+....+ ..++.+.+.+++-.+-
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a 75 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLA 75 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHH
Confidence 34788999999999999999999999999999987743322223344444333 3367777777766643
No 101
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=80.76 E-value=8 Score=35.47 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=51.6
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE-eeCCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT-TIEQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS-t~~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
..+.+.+.-..|.|.|+++++++-..++.|++.+=+ ..+++.-.|+.+... +-....++|..+|+.
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s-sm~~~V~~ii~kl~k 137 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS-SMEKDVDKIIEKLRK 137 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch-hhhhhHHHHHHHHhc
Confidence 346778888999999999999999999999998765 678877777776654 333467788777764
No 102
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=78.77 E-value=14 Score=26.67 Aligned_cols=59 Identities=22% Similarity=0.388 Sum_probs=37.5
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|.+. ..++.+.+++++|.+.++.|...+.+. .+ .-.+|.+.-. ..+.+...|++.+
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~-~~-~~i~~~v~~~-----~~~~~~~~l~~~~ 63 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS-SE-VNISFVVDED-----DADKAVKALHEEF 63 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC-Cc-eeEEEEEeHH-----HHHHHHHHHHHHH
Confidence 4566544 567899999999999999998876644 22 3344555421 2344455555544
No 103
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=78.45 E-value=13 Score=42.34 Aligned_cols=64 Identities=13% Similarity=0.228 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.+.|.|.+..++|+|.+|..+|-+.++.|.++++.+. ++.....|+++|.+-. ..+.|..+|++
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~--~L~~l~~~L~~ 731 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQ--VLGRVLGKLNQ 731 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHH--HHHHHHHHHhc
Confidence 3689999999999999999999999999999998775 3666677888887422 23444444443
No 104
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=77.88 E-value=8.4 Score=30.08 Aligned_cols=55 Identities=13% Similarity=0.241 Sum_probs=38.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
+++|.|.+|+..|..-|+.|-+.++... ++..-.++.+. ++ .-..+.|...|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~-~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GD-DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S--CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eC-chhHHHHHHHHhcc
Confidence 4689999999999999999999999984 45555566555 22 23566666666543
No 105
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=77.48 E-value=12 Score=42.42 Aligned_cols=67 Identities=13% Similarity=0.295 Sum_probs=56.0
Q ss_pred EEEEEEe-cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 349 AMIKILS-RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 349 v~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
..+.|.. +.++|.|.++..+|--.++.|.+|++.+ ++..+..|.|.-.-+....+..+.|.+..++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 614 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVY 614 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhc
Confidence 3455555 8999999999999999999999999999 88777889888766667788888888877654
No 106
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.31 E-value=15 Score=27.52 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=36.4
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|... .++|.+.+++++|.+.+++|.-.+.++.+ .-.+|.+.- -..+.+.+.||+.|
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~--~~isf~v~~-----~~~~~a~~~lh~~~ 64 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE--INISCVIDE-----KDAVKALNIIHTNL 64 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH-----HHHHHHHHHHHHHH
Confidence 3444443 46899999999999999999766554433 223444431 12445555666554
No 107
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=76.75 E-value=16 Score=41.40 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=43.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVAS 398 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~ 398 (424)
.+.|+|.+..++|+|.+|+.+|-+.++.|.++++.+.+ +.+...|.++|.+
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 46899999999999999999999999999999987765 4656678888873
No 108
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=76.74 E-value=16 Score=41.20 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=44.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVAS 398 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~ 398 (424)
.+.|+|.+.+++|+|.+|+.+|-+.+..|.++++.... +.....|.++|.+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 46899999999999999999999999999999998774 6666678888873
No 109
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=75.45 E-value=2.6 Score=39.23 Aligned_cols=46 Identities=20% Similarity=0.357 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHH
Q 014446 218 VERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQ 263 (424)
Q Consensus 218 aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~ 263 (424)
.||.|.+++++.+.-|++|+|+....++.+.--|.-+-.||..|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 5899999999999999999998655555554445555566655544
No 110
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.96 E-value=16 Score=27.88 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 351 IKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 351 IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|.|.+. ..+|++.+++.+|.+.++.|.. +++.+-. .+|.+.-. ..+++..+||+.|
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~--~~~Se~~--is~~v~~~-----~~~~av~~Lh~~f 62 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQ--TADSHTT--ISCLVSED-----DVKEAVNALHEAF 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEE--EEcCccE--EEEEEcHH-----HHHHHHHHHHHHh
Confidence 444443 5799999999999999999963 3332222 23333311 3455666777655
No 111
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.44 E-value=18 Score=31.80 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=38.0
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECC
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVAS 398 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~ 398 (424)
|-+..++++|.|.+||..|...|+.+.+...-...+ .--|.|.+.+++
T Consensus 44 lifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 44 LLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 334447789999999999999999999988877644 334888888764
No 112
>PRK08198 threonine dehydratase; Provisional
Probab=74.17 E-value=17 Score=37.86 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=48.8
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-----CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-----EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-----~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.++.+.+.|.-+.+||.|.++++.|-+.|..|+..+.... .+.+..++.+++.+ .. ..++|.++|.+
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~-~~-~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRG-PE-HIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCC-HH-HHHHHHHHHHH
Confidence 3566788999999999999999999999999998887642 24555566666532 11 35666666654
No 113
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.92 E-value=21 Score=26.48 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=37.6
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|.+. ..++.+.+++++|.+.+++|.-.+.+..+ .-.+|.+.- -..+++.++||+.|
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~--~~isf~v~~-----~d~~~~~~~lh~~~ 64 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSE--ISIMIGVHN-----EDADKAVKAIYEEF 64 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeH-----HHHHHHHHHHHHHH
Confidence 3455553 46899999999999999999766554322 223455541 12455666676655
No 114
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.14 E-value=21 Score=27.43 Aligned_cols=52 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+.+|++.+++++|.+.++.|.-.+.++.+-.+ +|.+.-+ ..+.+.++||+.|
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~si--s~~v~~~-----~~~~av~~Lh~~f 63 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNI--SLIVNDS-----EAEGCVQALHKSF 63 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceE--EEEEeHH-----HHHHHHHHHHHHH
Confidence 45789999999999999999776665554443 3444311 3566677777665
No 115
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.98 E-value=30 Score=28.15 Aligned_cols=62 Identities=18% Similarity=0.214 Sum_probs=38.9
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.++.|.-+.+||-|.+++++|- +.+|......... +.....+.+++.++ .-..+++.++|.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-~~~~~~i~~~L~~ 64 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-AEELAELLEDLKS 64 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-HHHHHHHHHHHHH
Confidence 5688889999999999999998 5566655544332 33334455665531 1134555555544
No 116
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=71.72 E-value=29 Score=33.09 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=50.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC----CEEEEE--EEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE----QTVLYS--FNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~----~~vl~t--f~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
+.|.|....+||++.+|-++|-+.|++|.+.+.-+.+ +.-++. +.+.++.+ +..++|..+|..+-.-+
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~--~~~~~L~~~l~~l~~eL 169 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS--QDAANIEQAFKALCTEL 169 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC--CCHHHHHHHHHHHHHHh
Confidence 5778888999999999999999999999888877664 333344 44555443 35788888777765543
No 117
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.55 E-value=31 Score=25.51 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=37.2
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|.+. ..++.+.+++++|.+.++.|.-.+.+..+ .-.+|.+.-. ..+++.+.||+.|
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~-----~~~~~~~~Lh~~~ 64 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAED-----DGWAAVKAVHDEF 64 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHH-----HHHHHHHHHHHHh
Confidence 4455553 46789999999999999999666544322 2234555421 2455556666654
No 118
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=69.95 E-value=22 Score=30.65 Aligned_cols=63 Identities=13% Similarity=0.236 Sum_probs=44.4
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEE--EEEEEEECCCCccCHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVL--YSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl--~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
...|.|...+++|+|.+|...|-.-|..|-+.++...+..-+ .++.+ .++ -..++|.+-|.+.
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv--~~~--~~i~Qi~kQL~KL 72 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV--NDD--QRLEQMISQIEKL 72 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE--cCc--hHHHHHHHHHhCC
Confidence 356788889999999999999999998888888776654333 45544 322 2456666655544
No 119
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=65.65 E-value=34 Score=26.54 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 358 RPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 358 r~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.+|++.+++++|.+.+++|.-.+.+..+-.+ +|.+.- -..+++.++||+.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~i--s~~V~~-----~~~~~av~~Lh~~f 64 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDV--QFVVDR-----DDYDNAIKALHAAL 64 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEE--EEEEEH-----HHHHHHHHHHHHHH
Confidence 5789999999999999999776655543332 344431 14667777777765
No 120
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=64.31 E-value=32 Score=35.41 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=47.5
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee-----CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI-----EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~-----~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.|..+.|.|.-+.+||.|.++++.+.+.+.+|++...... .+.....|.++..+ .-..++|.++|.+
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~--~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG--KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 4566788999999999999999999999999998876532 24554556666542 1234556665544
No 121
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=62.60 E-value=14 Score=37.23 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=44.7
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCC-CCCCCccchHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSY-VQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~-~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
+|..-+..||+|=..+|..|..||..||... ..|..|-..|.-|-.||--|-..+.
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3567788999999999999999999999721 3355677789999999987766553
No 122
>PRK06382 threonine dehydratase; Provisional
Probab=62.57 E-value=36 Score=35.63 Aligned_cols=67 Identities=24% Similarity=0.286 Sum_probs=46.6
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeE----ee-CCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNIT----TI-EQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnIS----t~-~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.+..+.|.|.-+.++|.|.+|++.|.+.+++|++.... .. .+....+|+++..+ .-..++|.+.|.+
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~--~~~~~~v~~~L~~ 398 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG--QDHLDRILNALRE 398 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC--HHHHHHHHHHHHH
Confidence 35567888888999999999999999999999987764 22 24555566666431 1123456665544
No 123
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=62.07 E-value=13 Score=42.04 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=50.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCC---CCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELEQLLQCLESQ 271 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~---~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~e 271 (424)
++++.|+.+|.+||..++-.|..|-+++-+. ...|+.++.-+...+.||..++.....+.++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 4578999999999999999999999988762 1345666777889999999988877666544
No 124
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.53 E-value=78 Score=25.38 Aligned_cols=55 Identities=13% Similarity=0.119 Sum_probs=34.7
Q ss_pred cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCH-HHHHHHHHHHHHH
Q 014446 356 RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTA-DDIASSVQQVFSF 417 (424)
Q Consensus 356 ~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsa-EeI~qaL~qaL~~ 417 (424)
+..+|.+.+|+++|.+.++.|-.... .. .-.+|.+.-. . ... +.+..+|..-|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~--s~--~~iSftv~~~--d-~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT--SE--ISVALTLDNT--G-STSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee--cC--CEEEEEEecc--c-cchhHHHHHHHHHHHHh
Confidence 45789999999999999999988753 22 3346666522 1 222 2333355555544
No 125
>PRK11899 prephenate dehydratase; Provisional
Probab=58.68 E-value=56 Score=32.95 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=45.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.|-+..+.++|.|.++|.+|-..|+.......-...+ .--|.|.+.+++. ..-+.+.++|.++
T Consensus 196 sl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~--~~d~~v~~aL~~l 259 (279)
T PRK11899 196 TFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH--PEDRNVALALEEL 259 (279)
T ss_pred EEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC--CCCHHHHHHHHHH
Confidence 3444447899999999999999999999888877754 4558999998752 2334455555443
No 126
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=58.66 E-value=40 Score=23.53 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEeEe
Q 014446 358 RPGQLIKAIAALEDLQFNILHTNITT 383 (424)
Q Consensus 358 r~GlL~kIL~ALEeLgLdVvsAnISt 383 (424)
.+|.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999997765543
No 127
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=57.09 E-value=81 Score=31.14 Aligned_cols=66 Identities=8% Similarity=-0.006 Sum_probs=45.1
Q ss_pred CeEEEEEEecCCCC--hHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPG--QLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 347 ~ev~IkI~C~rr~G--lL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
..+.++|.|.+... +...+++.|++.++.+.+.++.... +.+..+..+..........|+|++.|.
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~~~~~~ei~a~l~~~~~~~~~le~iv~~L~ 210 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIG 210 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecCCCCeEEEEEEEEecCCchhhHHHHHHHHh
Confidence 35688999988664 5889999999999999999997653 444444444433223345666666554
No 128
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.07 E-value=60 Score=24.87 Aligned_cols=50 Identities=12% Similarity=0.175 Sum_probs=32.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..+|++.+++++|.+.++.++....+ +-. .+|.+.-+ ..+++.++||+.|
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~s--~~~--is~vv~~~-----d~~~av~~LH~~f 61 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAAN--DLN--LTFVVDED-----QADGLCARLHFQL 61 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeCC--CCe--EEEEEeHH-----HHHHHHHHHHHHH
Confidence 57899999999999988777544322 222 24444421 3566777777665
No 129
>PRK08526 threonine dehydratase; Provisional
Probab=56.25 E-value=55 Score=34.48 Aligned_cols=67 Identities=12% Similarity=0.219 Sum_probs=48.0
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-----EEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-----TVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-----~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.|+.+.+.|.-+.+||.|.+++..+-+.+.+|++........ .+...+.++..+. -..++|.++|.+
T Consensus 323 ~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~l~~ 394 (403)
T PRK08526 323 SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK--EHQEEIRKILTE 394 (403)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH--HHHHHHHHHHHH
Confidence 356788999999999999999999999999999988866433 2444555665421 134555555543
No 130
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.23 E-value=78 Score=22.91 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=32.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..++.+.+++++|.+.++.|.-.+.+ +.. .+|.+.- -..+++..+|++.|
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~~~--is~~v~~-----~~~~~~~~~l~~~l 61 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS--EIK--ISCLVDE-----DDAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc--CCe--EEEEEeH-----HHHHHHHHHHHHHh
Confidence 45789999999999999999777632 222 3444431 13455666666655
No 131
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=54.13 E-value=52 Score=24.45 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEe
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNI 381 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnI 381 (424)
.++|.+.+|+++|++.++.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 4688999999999999999988843
No 132
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.44 E-value=1e+02 Score=25.12 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=30.0
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEE
Q 014446 350 MIKILS---RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVK 395 (424)
Q Consensus 350 ~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vK 395 (424)
+|+|.+ +..+|.+.+|+++|++.|+.|-.... ..+. .+|.+.
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~s--ISftV~ 47 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVS--ISLTLD 47 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCE--EEEEEE
Confidence 455555 34689999999999999999988753 2222 456665
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=52.41 E-value=71 Score=25.17 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=24.6
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhCCCeEEEEE
Q 014446 350 MIKILS---RRRPGQLIKAIAALEDLQFNILHTN 380 (424)
Q Consensus 350 ~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAn 380 (424)
+|.|.+ ...+|.+.+|+++|.+.++.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455543 3468999999999999999997775
No 134
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=51.40 E-value=89 Score=24.96 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=29.6
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEE
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVK 395 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vK 395 (424)
.|+|.+. ..+|.+.+|+++|++.++.|-.... ..+. .+|.+.
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~--isftv~ 47 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVH--VSMALH 47 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCE--EEEEEe
Confidence 4555554 3689999999999999999988753 2222 455554
No 135
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=51.33 E-value=94 Score=24.13 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=37.7
Q ss_pred EEEEEe---cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILS---RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.|.. ...++.+.+++++|.+.++.|.-.+.+..+ .-++|.+.-. ..+++.+.|++.|.
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~--~~isf~v~~~-----d~~~~~~~l~~~~~ 65 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE--HSISFVVDES-----DADKALEALEEEFA 65 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc--ceEEEEEeHH-----HHHHHHHHHHHHHH
Confidence 455533 346789999999999999999776654333 2244555421 23455556666663
No 136
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=50.74 E-value=24 Score=40.00 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=49.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.+++|....|+|+|..|+.+|+ +|.-+.++|.+.+++-.|-++ + + +....|..+|..++
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~-~-~--~~r~~~~~~~~~~~ 690 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK-P-G--FDRATVERDVTRVL 690 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec-C-c--ccHHHHHHHHHHHH
Confidence 6889999999999999999999 999999999999998888877 2 2 34566666666664
No 137
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=50.30 E-value=1e+02 Score=22.83 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=27.3
Q ss_pred cCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEE
Q 014446 356 RRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVK 395 (424)
Q Consensus 356 ~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vK 395 (424)
+..+|.+.+++++|.+.++.|.-...+...+ ....+|.+.
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~ 50 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVP 50 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEec
Confidence 5678999999999999999996554332222 233455554
No 138
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=49.34 E-value=66 Score=25.57 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=34.6
Q ss_pred ceEEEEEeCCeEEEEEEecCCCC------hHHHHHHHHHhCCCeEEEEEeEee
Q 014446 338 ADVEVKLLGLDAMIKILSRRRPG------QLIKAIAALEDLQFNILHTNITTI 384 (424)
Q Consensus 338 peVEV~i~g~ev~IkI~C~rr~G------lL~kIL~ALEeLgLdVvsAnISt~ 384 (424)
..|.++..++.+.|.|.+....- -+..+-++|...|+.|.+.++..-
T Consensus 27 v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 36777777899999999977432 477888999999999998887643
No 139
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=48.62 E-value=1e+02 Score=22.29 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=32.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..++.+.+++++|.+.++.|.-.+.+ + .-.+|.+.- -..+++.+.|+..|
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~~-----~d~~~~~~~l~~~~ 61 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLIDE-----DDAEKAVRALHEAF 61 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEeH-----HHHHHHHHHHHHHh
Confidence 45799999999999999999777632 2 223455541 13445555666554
No 140
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=47.67 E-value=45 Score=37.97 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=42.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEEC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVA 397 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~ 397 (424)
.+.|.|...+++|+|.+|+++|-+.+..|++++..+.+ +.....|.+++.
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC
Confidence 36788889999999999999999999999999999874 444456777776
No 141
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=41.69 E-value=1.2e+02 Score=27.54 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=34.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEE
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLY 390 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~ 390 (424)
.|.|..++++|-|..++.+|.+.|+.+---+|.-.+++=+.
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 47888999999999999999999999988888766665433
No 142
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=41.58 E-value=1.3e+02 Score=31.21 Aligned_cols=63 Identities=27% Similarity=0.350 Sum_probs=42.1
Q ss_pred EeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 344 LLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 344 i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
...+-..|.|... ..+|.+.+++++|.+.|+.|+.. ++.+..+ +|.+..+ ..+...++||+.|
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i--~~s~~~i--s~vv~~~-----d~~~av~~Lh~~f 398 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMI--GSSETNI--SFLVDEK-----DAEKAVRKLHEVF 398 (401)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE--EcCCCEE--EEEEeHH-----HHHHHHHHHHHHH
Confidence 3344456666664 57999999999999999999853 3333333 4444422 4677777887765
No 143
>PRK06291 aspartate kinase; Provisional
Probab=40.86 E-value=1.2e+02 Score=32.53 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=47.6
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.+..+-++|.|... ..+|++.+++.+|.+.++.|+-.+.++.+-.+ +|.+.-. ..+.+..+||+.|
T Consensus 391 ~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~I--s~vV~~~-----d~~~av~~Lh~~f 461 (465)
T PRK06291 391 DVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNI--SFVVDEE-----DGERAVKVLHDEF 461 (465)
T ss_pred ceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeE--EEEEeHH-----HHHHHHHHHHHHh
Confidence 3555566678888875 47899999999999999999866655554443 3333311 3667777777766
No 144
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.37 E-value=1.8e+02 Score=23.76 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=39.9
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC---EEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ---TVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~---~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
++++.|.-+.|||-|.+.++.|-. +.+|..-+....++ .++..| ++.+. ..+++.+.|.+
T Consensus 1 E~~~~v~iPErpGal~~Fl~~l~p-~~~ITeF~YR~~~~~~a~vlvGi--~~~~~---~~~~l~~~l~~ 63 (81)
T cd04907 1 ERLFRFEFPERPGALKKFLNELLP-KWNITLFHYRNQGSDYGRVLVGI--QVPDA---DLDELKERLDA 63 (81)
T ss_pred CeEEEEEcCCCCCHHHHHHHHhCC-CCeEeEEEEecCCCCceeEEEEE--EeChH---HHHHHHHHHHH
Confidence 357788889999999999999932 67888777765543 333333 43322 45566666554
No 145
>PRK11898 prephenate dehydratase; Provisional
Probab=40.22 E-value=1.3e+02 Score=30.16 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=38.0
Q ss_pred EEEEEecC-CCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECC
Q 014446 350 MIKILSRR-RPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVAS 398 (424)
Q Consensus 350 ~IkI~C~r-r~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~ 398 (424)
.|-+..+. ++|.|.++|..|...|+.+++...-...+ .--|.|.+.+++
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg 248 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG 248 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc
Confidence 34445554 59999999999999999999998887654 334888888874
No 146
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=40.02 E-value=1.2e+02 Score=32.07 Aligned_cols=60 Identities=12% Similarity=0.285 Sum_probs=44.0
Q ss_pred EEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCE-EEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 353 ILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQT-VLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 353 I~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~-vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
+.-++++|.|.++|..|-..|+.......=...+. --|.|.+.+++. .....+.++|.++
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~--~~d~~~~~aL~~l 362 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN--LRSAEMQKALKEL 362 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC--CCCHHHHHHHHHH
Confidence 33368999999999999999999988887766654 459999998752 2334455555443
No 147
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=39.52 E-value=1.1e+02 Score=33.08 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=37.9
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECC
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVAS 398 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~ 398 (424)
.|-+..+.++|.|.+||+.|...|+.+.+...-.... .--|.|.|.+++
T Consensus 18 SLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 18 SLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 3344447789999999999999999999988776543 334788888864
No 148
>PRK06635 aspartate kinase; Reviewed
Probab=39.27 E-value=1.4e+02 Score=31.03 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=36.8
Q ss_pred EeCCeEEEEEEe-cCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEE
Q 014446 344 LLGLDAMIKILS-RRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVK 395 (424)
Q Consensus 344 i~g~ev~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vK 395 (424)
..++-++|.|.+ ..++|.+.+|+.+|.+.|+.|...+.+...+ .+-.+|.+.
T Consensus 258 ~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~ 311 (404)
T PRK06635 258 FDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVP 311 (404)
T ss_pred ecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEc
Confidence 345556777766 3468999999999999999999876554332 454566554
No 149
>PRK08210 aspartate kinase I; Reviewed
Probab=38.69 E-value=1.2e+02 Score=31.60 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.+.+..+-++|.|... ..+|.+.+++++|.+.++.|+. +++.+..+ +|.+.-+ ..+.+.++||+.|
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~--~~~s~~~i--s~vv~~~-----~~~~a~~~Lh~~f 400 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ--SADSHTTI--WVLVKEE-----DMEKAVNALHDAF 400 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE--EecCCCEE--EEEEcHH-----HHHHHHHHHHHHh
Confidence 4555666677877774 4789999999999999999975 23322222 3333311 3667777777766
No 150
>PLN02551 aspartokinase
Probab=37.79 E-value=1.5e+02 Score=32.53 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=46.8
Q ss_pred EEEeCCeEEEEEEec--CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSR--RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 342 V~i~g~ev~IkI~C~--rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|.+..+-+.|.|... +.+|++.+++.+|.+.|+.|.-.+..+.+-.+ +|.+.- -..+.+.++||+.|
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinI--S~vV~~-----~d~~~Av~aLH~~F 507 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNI--SLIVND-----DEAEQCVRALHSAF 507 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEE--EEEEeH-----HHHHHHHHHHHHHH
Confidence 444456677777764 46899999999999999999776655433333 444431 14677888888877
No 151
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=37.48 E-value=91 Score=29.42 Aligned_cols=65 Identities=15% Similarity=0.294 Sum_probs=47.8
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEE--EEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVL--YSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl--~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
.+.+.-.+.+|.|.++...|-..|+.+-+..+...+.--+ -|+.+. + ..-..|+|+.-|++++..
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g-~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G-DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C-CcchHHHHHHHHHhhccc
Confidence 4566678899999999999999999998888886654223 345554 3 334588888888877654
No 152
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.23 E-value=2.1e+02 Score=22.87 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=26.8
Q ss_pred cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEE
Q 014446 356 RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVK 395 (424)
Q Consensus 356 ~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vK 395 (424)
+..+|.+.+|+++|++.++.|-.... ..+. .+|.+.
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~--isftv~ 47 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST--SETN--VTVSLD 47 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe--CCCE--EEEEEe
Confidence 34689999999999999999988753 2222 455555
No 153
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=37.18 E-value=56 Score=25.34 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEEEEEec----CCCChHHHHHHHHHhCCCeEEEEE
Q 014446 349 AMIKILSR----RRPGQLIKAIAALEDLQFNILHTN 380 (424)
Q Consensus 349 v~IkI~C~----rr~GlL~kIL~ALEeLgLdVvsAn 380 (424)
..|+|.++ ..+|++.++..+|-+.|+.|...+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45667766 368999999999999999998877
No 154
>PRK00907 hypothetical protein; Provisional
Probab=36.24 E-value=1.3e+02 Score=25.74 Aligned_cols=63 Identities=8% Similarity=0.037 Sum_probs=39.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCC----eEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQF----NILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgL----dVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
++-|||....++++...|++.++.+.- .-+..+-|.-+..+..++++.+.+.. -.+.|.++|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~e--Qld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESRE--QYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 356777778899999999999997743 33333445555565566666654322 2455555554
No 155
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=35.84 E-value=38 Score=23.74 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q 014446 217 AVERNRRKQMNEHLRVLRS 235 (424)
Q Consensus 217 ~aER~RR~kmn~~f~~Lrs 235 (424)
..=|+||+.++.++..||.
T Consensus 11 eqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 11 EQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3448899999999999986
No 156
>PRK06291 aspartate kinase; Provisional
Probab=35.81 E-value=1.7e+02 Score=31.40 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=43.0
Q ss_pred EeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 344 LLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 344 i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
...+-++|.|.+. ..+|.+.+++++|.+.++.|...+.++.... .+|.+.-. ..+.+..+|++.+.
T Consensus 317 ~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~-----d~~~av~~L~~~~~ 385 (465)
T PRK06291 317 LIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEA-----DLEKALKALRREFG 385 (465)
T ss_pred eeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHH-----HHHHHHHHHHHHHH
Confidence 3455678888875 4689999999999999999987654433322 34444421 23445556665544
No 157
>PRK07431 aspartate kinase; Provisional
Probab=35.69 E-value=1.4e+02 Score=32.80 Aligned_cols=67 Identities=27% Similarity=0.251 Sum_probs=47.4
Q ss_pred EEEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 340 VEVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 340 VEV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
-++.+..+-++|.|.+. ..+|++.+++.+|.+.++.|+..+ +.+..+ +|.+.- -..+++.++||+.|
T Consensus 340 ~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~I--s~vv~~-----~d~~~av~~Lh~~f 409 (587)
T PRK07431 340 AEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKV--SCVIDA-----EDGDKALRAVCEAF 409 (587)
T ss_pred CcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEcH-----HHHHHHHHHHHHHh
Confidence 34556677788988886 478999999999999999997766 222222 333321 13678888888887
No 158
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=34.65 E-value=1.8e+02 Score=30.03 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=44.3
Q ss_pred EEEeCCeEEEEEEe---cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILS---RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 342 V~i~g~ev~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|....+-+.|.|.. ..++|.+.+|+.+|.+.++.|...+.+..+.. .+|.+.-+ ..+.+.+.|++.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~--Is~~V~~~-----d~~~a~~~L~~~~ 323 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETS--ISLTVDET-----DADEAVRALKDQS 323 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCce--EEEEEeHH-----HHHHHHHHHHHHH
Confidence 44456677888884 56789999999999999999987655322222 24444311 2455666666655
No 159
>PRK09034 aspartate kinase; Reviewed
Probab=32.43 E-value=1.9e+02 Score=30.90 Aligned_cols=68 Identities=24% Similarity=0.284 Sum_probs=45.0
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|....+-++|.|... ..+|++.+++.+|.+.++.|.-.+.++.+ .-.+|.+. + -..+.+.++||+.|
T Consensus 378 ~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se--~~Is~vV~--~---~d~~~av~~LH~~f 448 (454)
T PRK09034 378 ELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE--ISIMFGVK--N---EDAEKAVKAIYNAF 448 (454)
T ss_pred eEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc--ceEEEEEc--H---HHHHHHHHHHHHHH
Confidence 3455566678888653 47899999999999999999776654433 22344443 1 12456666777766
No 160
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=32.18 E-value=1.9e+02 Score=33.41 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=48.5
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 342 V~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
|.+.++-++|.|.+. ..+|++.+++.+|.+.++.|+-.+-++.+-.+ +|.+.- -..+...++||+.|-
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~I--s~vV~~-----~d~~~al~~LH~~f~ 460 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSI--SVVIDN-----DDATKALRACHQSFF 460 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceE--EEEEcH-----HHHHHHHHHHHHHHh
Confidence 555677788888886 46899999999999999999877655554433 333331 136677778887773
No 161
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=31.84 E-value=2.4e+02 Score=30.43 Aligned_cols=67 Identities=22% Similarity=0.321 Sum_probs=48.0
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+|.+..+-+.|.|.-. ..+|...+++++|.+.++.|+-.+ ..-+-.+|.+.- -..+..+++||+.|-
T Consensus 376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~-----~~~~~av~~LH~~~~ 445 (447)
T COG0527 376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE-----KDAEKAVRALHEAFF 445 (447)
T ss_pred eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc-----HHHHHHHHHHHHHHh
Confidence 5666666678888764 367999999999999999998877 222223444431 257888889988763
No 162
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.29 E-value=2.3e+02 Score=21.26 Aligned_cols=57 Identities=16% Similarity=0.351 Sum_probs=31.5
Q ss_pred EEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 350 MIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 350 ~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
+|.|.+. ..+|++.+++++|.+.++.+++-. ..+-. .+|.+.-+ ..+.+..+||+.|
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~~--~s~~~--is~~V~~~-----~~~~a~~~Lh~~f 62 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDINVRMICYG--ASNHN--LCFLVKEE-----DKDEVVQRLHSRL 62 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhCCeEEEEEe--cCccE--EEEEEeHH-----HHHHHHHHHHHHH
Confidence 4455553 478999999999976444443222 21212 23444311 3566666676654
No 163
>PRK07431 aspartate kinase; Provisional
Probab=31.02 E-value=2.4e+02 Score=30.98 Aligned_cols=66 Identities=24% Similarity=0.172 Sum_probs=45.8
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 342 V~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+.+..+-+.|.|.-. .++|++.+++.+|.+.|+.|+-.. + .-+-.+|.+.- -..++.+.+||+.|.
T Consensus 513 i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~--S~~~Is~vV~~-----~~~~~av~~Lh~~f~ 581 (587)
T PRK07431 513 VEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--T--SEIRTSCVVAE-----DDGVKALQAVHQAFG 581 (587)
T ss_pred EEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c--cceEEEEEEeH-----HHHHHHHHHHHHHhc
Confidence 344455667787775 579999999999999999997665 2 22223444441 247788888888873
No 164
>PRK06635 aspartate kinase; Reviewed
Probab=30.78 E-value=2e+02 Score=29.86 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=42.5
Q ss_pred EEEeCCeEEEEEEe---cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILS---RRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 342 V~i~g~ev~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|.+..+-++|.|.+ ...+|.+.+|+++|.+.++.|.... +.+.. .+|.+.-. ..+.+.+.|+..|
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~--ss~~~--is~vv~~~-----d~~~a~~~Lh~~f 401 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIK--ISVLIDEK-----YLELAVRALHEAF 401 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE--ecCCe--EEEEEcHH-----HHHHHHHHHHHHH
Confidence 44455667788876 3578999999999999999998764 22222 24444321 2455566666655
No 165
>PRK02047 hypothetical protein; Provisional
Probab=30.26 E-value=1.8e+02 Score=24.51 Aligned_cols=62 Identities=13% Similarity=0.176 Sum_probs=40.5
Q ss_pred EEEEEEecCCCChHHHHHHHHHhC--CC--eEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDL--QF--NILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeL--gL--dVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
..+||.....+++...|.+.++.. ++ ..++.+-|.-+..+..++.+.+....+ .+.|.++|.
T Consensus 17 ~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~eq--~~~iY~~L~ 82 (91)
T PRK02047 17 FPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQ--LDNIYRALT 82 (91)
T ss_pred CeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCHHH--HHHHHHHHh
Confidence 456777788888888888888766 43 345566666677777777777663222 344554443
No 166
>PRK08639 threonine dehydratase; Validated
Probab=30.18 E-value=2.2e+02 Score=29.96 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=42.2
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC--EEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ--TVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~--~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.++.+.++|.-+.+||.|.++++.+-..+-+|+....-...+ .....+.+++.+.. ..++|.++|.+
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~--h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAE--DYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 356789999999999999999995555555887766543221 22233445544211 34566666654
No 167
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=29.64 E-value=1.8e+02 Score=31.77 Aligned_cols=48 Identities=29% Similarity=0.268 Sum_probs=37.4
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCE-EE-EEEEEEECC
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQT-VL-YSFNVKVAS 398 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~-vl-~tf~vKv~~ 398 (424)
|-+..+.++|.|.++|+.|+..|+.+++...-..... -- |.|.+.++.
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 3444467899999999999999999999987776543 33 778888763
No 168
>PRK03094 hypothetical protein; Provisional
Probab=28.35 E-value=91 Score=26.15 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhCCCeEEEEEe-----------Eee--------CCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 361 QLIKAIAALEDLQFNILHTNI-----------TTI--------EQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 361 lL~kIL~ALEeLgLdVvsAnI-----------St~--------~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
-|+.|-++|++.|.+|+...- .+- .++....+++. ...+|+|+|.+.|.+-+
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~---A~G~TaeEI~~~ve~r~ 79 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT---ASGLTADEICQQVESRL 79 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEE---cCCCCHHHHHHHHHHhh
Confidence 488999999999999976542 110 01111122222 23479999999997654
No 169
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=28.16 E-value=2.6e+02 Score=29.40 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=43.9
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe-eC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 346 GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT-IE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 346 g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt-~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|+.+.+++.-+.+||-|.++++.+-..+.+|++...-. .+ +..-..+.+++.+.. ..++|.++|.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~--h~~~i~~~L~~ 390 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKE--DFAGLLERMAA 390 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 56789999999999999999997766766888777653 22 233344556655311 23555555544
No 170
>PRK00341 hypothetical protein; Provisional
Probab=28.12 E-value=1.8e+02 Score=24.63 Aligned_cols=61 Identities=15% Similarity=0.162 Sum_probs=37.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEE----EeEeeCCEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHT----NITTIEQTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsA----nISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
+-|+|.....+++...|++.++... ++-.. .-|.-+..+..++.+.+.+.. -.+.|.++|.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~~s~~--q~~~iy~~L~ 82 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVATDED--QLQDINSALR 82 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 3456666888999999999997664 44333 334444566677777765322 2344544443
No 171
>PRK08841 aspartate kinase; Validated
Probab=27.80 E-value=2.1e+02 Score=30.10 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=45.0
Q ss_pred EEeCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 343 KLLGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 343 ~i~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
....+-..|.|.-...+|++.+++.+|.+.++.|+...- ++ +-.+|.+.- -..+...++||+.|.
T Consensus 313 ~~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~~---s~-~~is~vv~~-----~~~~~av~~lH~~f~ 377 (392)
T PRK08841 313 RNSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCST---EP-QSSMLVLDP-----ANVDRAANILHKTYV 377 (392)
T ss_pred EEeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEEC---CC-cEEEEEEeH-----HHHHHHHHHHHHHHc
Confidence 334555677777777799999999999999999966553 22 333444442 246777888887764
No 172
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=27.71 E-value=3.5e+02 Score=23.01 Aligned_cols=63 Identities=14% Similarity=0.266 Sum_probs=46.1
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.+.|....+|+.|.+|+.+.+--|+-|...+.++. .+..-.-|+|.. .-+.+-|..-|.++..
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s----~R~~~lL~~QLeKl~D 69 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS----DRSVDLLTSQLEKLYD 69 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC----CCChHHHHHHHHHHcc
Confidence 45666788999999999999999999999999987 445544555542 2356666666665544
No 173
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=27.27 E-value=2.9e+02 Score=26.18 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=37.4
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee---CCEEEEEEEEEEC
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI---EQTVLYSFNVKVA 397 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~---~~~vl~tf~vKv~ 397 (424)
+.+-|.-+.+||.|+++++-|-+.|..|++..-+.- ++++---+++++.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 345666788999999999999999999998887765 5565444555543
No 174
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=27.12 E-value=2.8e+02 Score=22.50 Aligned_cols=51 Identities=14% Similarity=0.237 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 358 RPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 358 r~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..|.-..||++|.++++.|+.- .+..+++-|.+....+ ..+.+..+|.+.+
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~k-----~~~r~~~~Le~~~ 64 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSLK-----TIKRLTEDLENRF 64 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCHH-----HHHHHHHHHHHhC
Confidence 4678999999999999999987 4555677666665422 3555666665544
No 175
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=26.92 E-value=1.3e+02 Score=25.22 Aligned_cols=55 Identities=16% Similarity=0.333 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhCCCeEEEEEeEe-eC--CEEEEE-------------EEEEECCCCccCHHHHHHHHHHHH
Q 014446 361 QLIKAIAALEDLQFNILHTNITT-IE--QTVLYS-------------FNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 361 lL~kIL~ALEeLgLdVvsAnISt-~~--~~vl~t-------------f~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
-|+.|-++|++-|.+|+...--. .. +.++++ +.+-|=+-..+|+++|.+.|.+-|
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~~~~~~daiVvtG~~~n~mg~~d~~~~~pVInA~G~T~eEI~~~v~~rl 79 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQDLQNVDAIVVTGQDTNMMGIQDTSTKVPVINASGLTAEEIVQEVEERL 79 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCccccCCcCEEEEECCCcccccccccccCceEEecCCCCHHHHHHHHHHhh
Confidence 58899999999999998765332 00 111111 011111223468999999988754
No 176
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.77 E-value=2.3e+02 Score=19.86 Aligned_cols=39 Identities=26% Similarity=0.271 Sum_probs=27.5
Q ss_pred cCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEE
Q 014446 356 RRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNV 394 (424)
Q Consensus 356 ~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~v 394 (424)
+..+|.+.+++++|.+.++.|...+.+... +.+..+|.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v 48 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTV 48 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEE
Confidence 567899999999999999999776554322 223344554
No 177
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=26.57 E-value=2.9e+02 Score=28.20 Aligned_cols=61 Identities=13% Similarity=0.267 Sum_probs=43.7
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|-+.-+.+||.|.++|..|-..|++......-.... .--|.|.+.+++... -..+.++|.+
T Consensus 197 l~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~--~~~v~~AL~e 258 (279)
T COG0077 197 LIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID--DPLVKEALEE 258 (279)
T ss_pred EEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC--cHhHHHHHHH
Confidence 334445899999999999999999988877776654 445889999875432 2444445444
No 178
>PRK09977 putative Mg(2+) transport ATPase; Provisional
Probab=25.80 E-value=5.2e+02 Score=25.21 Aligned_cols=65 Identities=3% Similarity=0.114 Sum_probs=43.4
Q ss_pred eCCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 345 LGLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 345 ~g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
......++|.|... .+.++.+.|.+.++.+.+.++...++.....+.+++.. ..+.+++.+.|.+
T Consensus 141 ~~~~~~~~i~~~~~--~~~~i~~~l~~~~i~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~L~~ 205 (215)
T PRK09977 141 MNKHYHLQLTLVNG--NVVSMLDWFKQQKIKTDLVSLQENEDHEVVAIDITLHA--TTSIEDLYRLLKG 205 (215)
T ss_pred ccCcEEEEEEEccc--cHHHHHHHHHHcCceEEEEEEEecCCCcEEEEEEEECC--CCCHHHHHHHHhc
Confidence 34456777888654 36889999999999999998875543333344455442 4567777776654
No 179
>PRK09224 threonine dehydratase; Reviewed
Probab=25.77 E-value=4.1e+02 Score=28.95 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=41.1
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 346 GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 346 g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
++++.+.|.-+.+||-|.++++.|- +.+|+..+....+ +..-..+.+++.+.. -..++|.++|.+
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~~-~~~~~i~~~L~~ 391 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRGQ-EERAEIIAQLRA 391 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCChh-hHHHHHHHHHHH
Confidence 5688999999999999999999998 4555555544332 222233445544211 124566666654
No 180
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=25.18 E-value=2.3e+02 Score=27.10 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=46.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEE--ECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVK--VASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vK--v~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.++|....|+|++-++.+.|..+|+.+.+-...+. .+.----|+++ +.--..++.+.|.+++..+-.-+
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~al~~~L 166 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFEALCDEL 166 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHHHHHHhh
Confidence 3567777899999999999999999988866555443 22111123333 22234467888888877665544
No 181
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.64 E-value=1.7e+02 Score=24.41 Aligned_cols=63 Identities=16% Similarity=0.232 Sum_probs=40.4
Q ss_pred EEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEECCCCc-cC----HHHHHHHHHHH
Q 014446 352 KILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVASETR-FT----ADDIASSVQQV 414 (424)
Q Consensus 352 kI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~~~~~-ls----aEeI~qaL~qa 414 (424)
+++-.-||-++.++--||..|++-|-+|.|.. .+++--....+...++.. ++ ...|.+.++..
T Consensus 4 ElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~ 73 (77)
T cd04898 4 ELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKT 73 (77)
T ss_pred cccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHH
Confidence 34445688999999999999999999999984 445544343333332222 44 34555554443
No 182
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=24.49 E-value=85 Score=25.68 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=45.3
Q ss_pred EEEEecC-CCChHHHHHHHHHhCCCeEEEEEeEeeCCEE---------EEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 351 IKILSRR-RPGQLIKAIAALEDLQFNILHTNITTIEQTV---------LYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 351 IkI~C~r-r~GlL~kIL~ALEeLgLdVvsAnISt~~~~v---------l~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
|.|..++ ..|.+..|-+.|-++|+.|.+.+- ..+++ .+++.+.+.+.. ...+.++.+|.++-.
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~-~~~~~lr~~L~~la~ 74 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP-ADLEALRAALLELAS 74 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC-CCHHHHHHHHHHHhc
Confidence 4555566 789999999999999999876553 33332 457777776433 688899988886543
No 183
>PLN02551 aspartokinase
Probab=24.42 E-value=3e+02 Score=30.27 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCeEEEEEEecC---CCChHHHHHHHHHhCCCeEEEEE
Q 014446 346 GLDAMIKILSRR---RPGQLIKAIAALEDLQFNILHTN 380 (424)
Q Consensus 346 g~ev~IkI~C~r---r~GlL~kIL~ALEeLgLdVvsAn 380 (424)
.+.++|+|.+.. .+|.+.+|+.+|.++++.|....
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is 401 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 401 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe
Confidence 456789998864 68999999999999999998874
No 184
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=24.21 E-value=3.4e+02 Score=28.64 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|....+-++|.|.+. ..+|.+.+|+++|.+.|+.|.-.. +.+..+..++.-+ ..+++.++||+.|
T Consensus 371 ~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~--~se~~Is~vV~~~-------d~~~a~~~Lh~~f 439 (441)
T TIGR00657 371 SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS--SSEINISFVVDEK-------DAEKAVRLLHNAL 439 (441)
T ss_pred eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE--ecCCcEEEEEeHH-------HHHHHHHHHHHHh
No 185
>PRK04998 hypothetical protein; Provisional
Probab=23.78 E-value=2.2e+02 Score=23.64 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=39.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCC--CeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQ--FNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQ 412 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLg--LdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~ 412 (424)
..++|.-...+.+...|.++++... .+.+..+-|.-+..+..++.+.+.... ..++|.++|.
T Consensus 16 ~~~Kvig~~~~~~~~~v~~v~~~~~~~~~~~~~r~S~~GkY~Svtv~v~v~s~e--q~~~iY~~L~ 79 (88)
T PRK04998 16 FTYKVMGLARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIE--QVETLYEELA 79 (88)
T ss_pred ceEEEEEeCcHhHHHHHHHHHHHhCCCCCCceEccCCCCEEEEEEEEEEECCHH--HHHHHHHHHh
Confidence 4566666777889999999997762 233455556666677677777765322 2344554443
No 186
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=23.21 E-value=75 Score=30.32 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=41.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEEC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVA 397 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~ 397 (424)
-++|......+||+...|.++.-+.|-.++.+.++.+++.+ ++.+++.
T Consensus 5 ~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~--a~i~lis 52 (176)
T COG2716 5 YLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEF--AGIMLIS 52 (176)
T ss_pred EEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcce--eEEEEEe
Confidence 36788888999999999999999999999999999999976 4555544
No 187
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=22.85 E-value=4e+02 Score=29.06 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=40.9
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 346 GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 346 g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
++++.+.|.-+.+||.|.+++++|-. .+|+..+.-..+ +..-..+.+++.+.. ..++|.++|.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~--~~~~l~~~L~~ 387 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQ--ERQEILARLND 387 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHH--HHHHHHHHHHH
Confidence 57899999999999999999999987 355555554333 222233445554211 34555555543
No 188
>PRK12483 threonine dehydratase; Reviewed
Probab=22.26 E-value=5.1e+02 Score=28.58 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=41.0
Q ss_pred CCeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCH-HHHHHHHH
Q 014446 346 GLDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTA-DDIASSVQ 412 (424)
Q Consensus 346 g~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsa-EeI~qaL~ 412 (424)
|..+.+.|.-+.+||.|.+++..|-+. +|+..+....+. ..-..+.++..+.. .. ++|.++|.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~--~~~~~i~~~l~ 407 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRH--DPRAQLLASLR 407 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChh--hhHHHHHHHHH
Confidence 567899999999999999999999877 777666654332 23334445544211 12 45555554
No 189
>PLN02317 arogenate dehydratase
Probab=21.37 E-value=4e+02 Score=28.39 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=35.2
Q ss_pred ecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCE---------------EEEEEEEEECC
Q 014446 355 SRRRPGQLIKAIAALEDLQFNILHTNITTIEQT---------------VLYSFNVKVAS 398 (424)
Q Consensus 355 C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~---------------vl~tf~vKv~~ 398 (424)
-+.++|.|.++|.+|...++.+.+...-..... .-|.|.+.++.
T Consensus 290 l~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 290 LEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred cCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 366899999999999999999999887665433 34888888764
Done!