Query 014446
Match_columns 424
No_of_seqs 199 out of 1206
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:42:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 5.5E-15 1.9E-19 120.4 7.7 64 210-274 5-68 (82)
2 1hlo_A Protein (transcription 99.5 3.3E-14 1.1E-18 115.0 7.0 66 209-274 10-75 (80)
3 1nkp_B MAX protein, MYC proto- 99.5 4.6E-14 1.6E-18 114.7 7.4 64 211-274 2-65 (83)
4 4h10_B Circadian locomoter out 99.5 5.7E-14 2E-18 111.9 5.8 59 210-269 7-65 (71)
5 1nkp_A C-MYC, MYC proto-oncoge 99.4 1.5E-13 5.1E-18 113.5 7.7 65 209-273 4-69 (88)
6 1an4_A Protein (upstream stimu 99.4 5.5E-14 1.9E-18 109.3 2.2 55 211-265 5-63 (65)
7 4ati_A MITF, microphthalmia-as 99.4 5.3E-13 1.8E-17 115.6 7.4 61 212-272 28-90 (118)
8 1a0a_A BHLH, protein (phosphat 99.4 7.5E-14 2.6E-18 108.7 1.0 55 212-266 3-62 (63)
9 1nlw_A MAD protein, MAX dimeri 99.4 1.7E-12 5.7E-17 105.5 8.4 63 212-274 2-65 (80)
10 4h10_A ARYL hydrocarbon recept 99.3 3.5E-13 1.2E-17 107.8 3.0 55 209-263 7-63 (73)
11 3u5v_A Protein MAX, transcript 99.3 8.4E-13 2.9E-17 106.4 2.9 60 210-269 4-65 (76)
12 1mdy_A Protein (MYOD BHLH doma 99.2 3.7E-11 1.3E-15 94.9 5.9 56 210-265 11-66 (68)
13 2ql2_B Neurod1, neurogenic dif 99.0 1.9E-10 6.6E-15 88.7 5.8 56 211-266 2-58 (60)
14 4f3l_A Mclock, circadian locom 98.7 5.6E-09 1.9E-13 103.8 5.3 53 211-264 12-64 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 3.2E-08 1.1E-12 99.6 5.2 53 212-264 14-68 (387)
16 2lfh_A DNA-binding protein inh 98.4 6.3E-08 2.2E-12 76.3 1.6 47 217-263 20-67 (68)
17 4ath_A MITF, microphthalmia-as 98.0 1.1E-05 3.8E-10 65.9 6.6 49 223-271 4-54 (83)
18 4aya_A DNA-binding protein inh 97.8 3.2E-05 1.1E-09 64.9 6.1 49 218-266 32-81 (97)
19 1zpv_A ACT domain protein; str 97.2 0.006 2.1E-07 48.1 12.1 68 348-417 5-72 (91)
20 1u8s_A Glycine cleavage system 96.5 0.016 5.3E-07 52.3 10.2 66 348-416 6-71 (192)
21 2nyi_A Unknown protein; protei 95.9 0.041 1.4E-06 50.1 10.2 50 348-397 5-54 (195)
22 2ko1_A CTR148A, GTP pyrophosph 95.7 0.11 3.7E-06 40.1 10.4 49 349-397 6-54 (88)
23 1u8s_A Glycine cleavage system 95.5 0.091 3.1E-06 47.2 10.5 69 348-418 93-169 (192)
24 2nyi_A Unknown protein; protei 95.5 0.049 1.7E-06 49.6 8.8 68 348-418 93-166 (195)
25 3n0v_A Formyltetrahydrofolate 92.3 0.63 2.2E-05 45.3 9.9 67 348-416 8-76 (286)
26 3p96_A Phosphoserine phosphata 92.0 0.51 1.7E-05 46.9 9.1 68 348-416 12-79 (415)
27 3o1l_A Formyltetrahydrofolate 91.0 1.2 4.1E-05 43.8 10.4 70 348-418 22-93 (302)
28 2jhe_A Transcription regulator 90.4 0.66 2.3E-05 39.6 7.1 35 350-384 2-36 (190)
29 3lou_A Formyltetrahydrofolate 90.3 0.83 2.9E-05 44.6 8.6 72 347-418 9-83 (292)
30 3obi_A Formyltetrahydrofolate 90.2 1.5 5E-05 42.8 10.2 69 348-417 6-76 (288)
31 2f1f_A Acetolactate synthase i 88.8 0.62 2.1E-05 42.0 5.8 63 349-414 4-68 (164)
32 3nrb_A Formyltetrahydrofolate 87.3 2 6.7E-05 41.9 8.8 64 347-413 6-71 (287)
33 2pc6_A Probable acetolactate s 84.9 0.87 3E-05 41.1 4.6 63 349-414 5-69 (165)
34 1y7p_A Hypothetical protein AF 84.0 2.2 7.4E-05 40.5 7.0 61 348-413 4-69 (223)
35 2fgc_A Acetolactate synthase, 80.9 2.5 8.5E-05 39.2 6.0 63 349-414 30-94 (193)
36 2f06_A Conserved hypothetical 76.8 13 0.00044 31.3 9.0 57 351-414 75-131 (144)
37 2re1_A Aspartokinase, alpha an 74.1 10 0.00035 33.2 7.9 65 342-415 97-164 (167)
38 2dt9_A Aspartokinase; protein- 62.4 22 0.00076 30.9 7.5 67 341-416 88-157 (167)
39 2dt9_A Aspartokinase; protein- 61.1 32 0.0011 29.8 8.3 53 343-395 11-67 (167)
40 3s1t_A Aspartokinase; ACT doma 59.9 23 0.0008 31.6 7.3 67 341-416 89-158 (181)
41 2dtj_A Aspartokinase; protein- 59.8 33 0.0011 30.3 8.2 67 341-416 88-157 (178)
42 2f06_A Conserved hypothetical 59.4 43 0.0015 28.0 8.6 37 350-386 8-44 (144)
43 2dtj_A Aspartokinase; protein- 53.3 43 0.0015 29.5 7.9 54 342-395 9-66 (178)
44 2re1_A Aspartokinase, alpha an 47.1 45 0.0015 29.0 6.9 53 343-395 20-74 (167)
45 3s1t_A Aspartokinase; ACT doma 45.2 1.1E+02 0.0036 27.2 9.2 52 344-395 12-67 (181)
46 2qmw_A PDT, prephenate dehydra 44.4 51 0.0018 31.6 7.3 63 349-414 187-253 (267)
47 1rwu_A Hypothetical UPF0250 pr 44.0 48 0.0016 27.8 6.2 49 348-397 36-87 (109)
48 3ab4_A Aspartokinase; aspartat 42.1 66 0.0023 32.3 8.1 66 341-415 337-405 (421)
49 2qmx_A Prephenate dehydratase; 41.4 56 0.0019 31.6 7.1 61 351-413 203-264 (283)
50 3luy_A Probable chorismate mut 41.2 1.3E+02 0.0045 29.7 9.9 56 357-414 217-273 (329)
51 3ab4_A Aspartokinase; aspartat 38.9 1.5E+02 0.0053 29.5 10.2 54 342-395 258-315 (421)
52 4go7_X Aspartokinase; transfer 35.8 1.2E+02 0.0042 27.6 8.2 54 342-395 29-86 (200)
53 3mwb_A Prephenate dehydratase; 34.3 80 0.0027 31.0 7.0 63 350-414 203-267 (313)
54 3tvi_A Aspartokinase; structur 31.0 1.3E+02 0.0045 30.7 8.3 67 342-415 368-437 (446)
55 2lqj_A Mg2+ transport protein; 29.6 95 0.0033 25.1 5.6 40 349-388 9-51 (94)
56 3c1m_A Probable aspartokinase; 29.5 81 0.0028 32.2 6.4 68 342-416 398-468 (473)
57 3mah_A Aspartokinase; aspartat 28.8 64 0.0022 27.6 4.8 67 341-416 81-150 (157)
58 2l5g_A GPS2 protein, G protein 28.1 64 0.0022 22.4 3.6 30 245-274 4-33 (38)
59 3he4_B Synzip5; heterodimeric 27.8 74 0.0025 22.4 3.9 24 251-274 5-28 (46)
60 4hti_A Receptor-type tyrosine- 26.4 1.8E+02 0.0062 24.1 6.8 76 340-418 1-81 (99)
61 4go7_X Aspartokinase; transfer 26.0 2.3E+02 0.008 25.7 8.3 67 341-416 108-177 (200)
62 1g70_B RSG-1.2 peptide; peptid 24.4 42 0.0014 21.1 1.9 10 217-226 11-20 (26)
63 3mah_A Aspartokinase; aspartat 23.1 87 0.003 26.8 4.6 37 344-380 14-53 (157)
64 1pd7_B MAD1; PAH2, SIN3, eukar 23.1 86 0.0029 20.1 3.2 19 245-263 2-20 (26)
65 1ygy_A PGDH, D-3-phosphoglycer 22.5 3.6E+02 0.012 27.8 9.8 62 347-413 453-516 (529)
66 1zme_C Proline utilization tra 22.5 67 0.0023 23.5 3.2 20 255-274 43-62 (70)
67 1phz_A Protein (phenylalanine 22.3 83 0.0028 32.4 4.8 61 351-414 37-98 (429)
68 2er8_A Regulatory protein Leu3 22.0 65 0.0022 23.8 3.1 20 255-274 48-67 (72)
69 2dnr_A Synaptojanin-1; RRM dom 21.6 1.3E+02 0.0043 24.5 4.9 25 360-385 27-51 (91)
70 1xkm_B Distinctin chain B; por 20.8 81 0.0028 19.8 2.7 18 249-266 4-21 (26)
71 3l76_A Aspartokinase; alloster 20.1 2.3E+02 0.008 29.9 7.9 68 340-416 347-417 (600)
72 3mgj_A Uncharacterized protein 20.0 1.2E+02 0.0042 25.9 4.7 56 358-415 14-72 (118)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.56 E-value=5.5e-15 Score=120.36 Aligned_cols=64 Identities=23% Similarity=0.435 Sum_probs=59.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
.++.+|+.+||+||.+||++|..|++|||+. ..|++|++||.+||+||++|+.+++.|+.+...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~ 68 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLS 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999984 489999999999999999999999999987664
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=3.3e-14 Score=114.98 Aligned_cols=66 Identities=21% Similarity=0.388 Sum_probs=60.6
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 209 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 209 ~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
..+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|++++++|+.+++.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~ 75 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999854468999999999999999999999999988764
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.48 E-value=4.6e-14 Score=114.67 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=58.3
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
+|.+|+.+||+||..||+.|..|+++||.....|++|++||..||+||+.|+++++.|+.+++.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999999844579999999999999999999999999887654
No 4
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.45 E-value=5.7e-14 Score=111.89 Aligned_cols=59 Identities=27% Similarity=0.579 Sum_probs=54.5
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLE 269 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le 269 (424)
+.|.+|+.+||+||.+||++|..|++|||.. ..|+||++||..||+||+.||.++..|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5688999999999999999999999999974 5699999999999999999999988765
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=1.5e-13 Score=113.47 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=57.7
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHccCCCCC-CCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 209 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSY-VQRGDQASIIGGAIEFVRELEQLLQCLESQKR 273 (424)
Q Consensus 209 ~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~-~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~ 273 (424)
...|..|+..||+||.+||++|..|+.+||... ..|.+|++||..||+||+.|+.+.+.|..+++
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999831 36999999999999999999999988876544
No 6
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=5.5e-14 Score=109.30 Aligned_cols=55 Identities=29% Similarity=0.500 Sum_probs=49.2
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCCC----CCCCccchHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYV----QRGDQASIIGGAIEFVRELEQLL 265 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~----~K~dKaSIL~eAI~YIk~Lq~~v 265 (424)
++.+|+.+||+||.+||+.|..|++|||.... .|++|++||..||+||+.|+++.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999998532 27899999999999999999764
No 7
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.38 E-value=5.3e-13 Score=115.64 Aligned_cols=61 Identities=25% Similarity=0.467 Sum_probs=52.3
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Q 014446 212 RMTHIAVERNRRKQMNEHLRVLRSLMPGSY--VQRGDQASIIGGAIEFVRELEQLLQCLESQK 272 (424)
Q Consensus 212 r~~H~~aER~RR~kmn~~f~~LrsLvP~~~--~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek 272 (424)
+.+|+.+||+||.+||++|..|++|||.+. ..|++|++||..||+||+.|+++++.|++..
T Consensus 28 r~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 28 KDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999842 2478899999999999999999999998653
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.37 E-value=7.5e-14 Score=108.66 Aligned_cols=55 Identities=27% Similarity=0.436 Sum_probs=48.4
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHccCCCCC-----CCCCCccchHHHHHHHHHHHHHHHH
Q 014446 212 RMTHIAVERNRRKQMNEHLRVLRSLMPGSY-----VQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 212 r~~H~~aER~RR~kmn~~f~~LrsLvP~~~-----~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
|.+|+.+||+||.+||..|..|++|||.+. ..+.+||+||+.||+||++||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999999999621 2466799999999999999998653
No 9
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.36 E-value=1.7e-12 Score=105.49 Aligned_cols=63 Identities=27% Similarity=0.309 Sum_probs=56.7
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHccCCCC-CCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 212 RMTHIAVERNRRKQMNEHLRVLRSLMPGS-YVQRGDQASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 212 r~~H~~aER~RR~kmn~~f~~LrsLvP~~-~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
|..|+..||+||..||.+|..|+++||.. ...|..|++||..|++||+.|+++.+.|+.+++.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999962 2467889999999999999999999999887654
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.33 E-value=3.5e-13 Score=107.83 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=48.9
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHccCCCCC--CCCCCccchHHHHHHHHHHHHH
Q 014446 209 ESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSY--VQRGDQASIIGGAIEFVRELEQ 263 (424)
Q Consensus 209 ~s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~--~~K~dKaSIL~eAI~YIk~Lq~ 263 (424)
..++.+|+.+||+||++||+.|..|++|||.+. ..|+||++||..||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999999731 3799999999999999999863
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.29 E-value=8.4e-13 Score=106.40 Aligned_cols=60 Identities=27% Similarity=0.374 Sum_probs=48.1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCC-CCCCCC-CccchHHHHHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPG-SYVQRG-DQASIIGGAIEFVRELEQLLQCLE 269 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~-~~~~K~-dKaSIL~eAI~YIk~Lq~~v~~Le 269 (424)
.+|..|+..||+||.+||+.|..||.+||. ....|. .|++||..||+||+.|++++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999994 213344 577899999999999999998765
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.15 E-value=3.7e-11 Score=94.88 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=51.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHHH
Q 014446 210 SQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLL 265 (424)
Q Consensus 210 s~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~v 265 (424)
.+|..|+..||+|+..||+.|..||.+||.....|.+|+.||..||+||..|++.+
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999754678899999999999999999865
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.05 E-value=1.9e-10 Score=88.66 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=50.1
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCC-CCCCCCccchHHHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS-YVQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~-~~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
+|..|+..||+|+..||+.|..||.+||.. ...|..|+.||..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 577899999999999999999999999973 24588999999999999999998763
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.74 E-value=5.6e-09 Score=103.76 Aligned_cols=53 Identities=26% Similarity=0.580 Sum_probs=42.8
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHccCCCCCCCCCCccchHHHHHHHHHHHHHH
Q 014446 211 QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQL 264 (424)
Q Consensus 211 ~r~~H~~aER~RR~kmn~~f~~LrsLvP~~~~~K~dKaSIL~eAI~YIk~Lq~~ 264 (424)
.|.+|+.+||+||++||..|..|++|||.. ..|+||++||..||.||+.|+..
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~-~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSS-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCC-CCCcCHHHHHHHHHHHHHHHHhh
Confidence 356899999999999999999999999942 68999999999999999999864
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.58 E-value=3.2e-08 Score=99.56 Aligned_cols=53 Identities=26% Similarity=0.473 Sum_probs=47.4
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHccCCCC--CCCCCCccchHHHHHHHHHHHHHH
Q 014446 212 RMTHIAVERNRRKQMNEHLRVLRSLMPGS--YVQRGDQASIIGGAIEFVRELEQL 264 (424)
Q Consensus 212 r~~H~~aER~RR~kmn~~f~~LrsLvP~~--~~~K~dKaSIL~eAI~YIk~Lq~~ 264 (424)
|.+|+.+||+||++||..|..|++|||.+ ...|+||++||..||+||+.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 56899999999999999999999999931 157999999999999999998743
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.40 E-value=6.3e-08 Score=76.35 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCC-CCCCCCccchHHHHHHHHHHHHH
Q 014446 217 AVERNRRKQMNEHLRVLRSLMPGS-YVQRGDQASIIGGAIEFVRELEQ 263 (424)
Q Consensus 217 ~aER~RR~kmn~~f~~LrsLvP~~-~~~K~dKaSIL~eAI~YIk~Lq~ 263 (424)
..||+|+..||+.|..||.+||.. ...|.+|..||.-||+||..||.
T Consensus 20 erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 20 EEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 567999999999999999999972 24578999999999999999984
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.99 E-value=1.1e-05 Score=65.87 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHccCCCC--CCCCCCccchHHHHHHHHHHHHHHHHHHHHH
Q 014446 223 RKQMNEHLRVLRSLMPGS--YVQRGDQASIIGGAIEFVRELEQLLQCLESQ 271 (424)
Q Consensus 223 R~kmn~~f~~LrsLvP~~--~~~K~dKaSIL~eAI~YIk~Lq~~v~~Le~e 271 (424)
|..||++|..|..|||.+ ...|..|.+||..|++||+.||+.++.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999973 2457899999999999999999988777654
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.78 E-value=3.2e-05 Score=64.88 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHccCCCC-CCCCCCccchHHHHHHHHHHHHHHHH
Q 014446 218 VERNRRKQMNEHLRVLRSLMPGS-YVQRGDQASIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 218 aER~RR~kmn~~f~~LrsLvP~~-~~~K~dKaSIL~eAI~YIk~Lq~~v~ 266 (424)
.||.|=..||+.|..||.+||.. ...|..|..+|.-||+||..|++-++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 45788889999999999999962 24678999999999999999998764
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.19 E-value=0.006 Score=48.14 Aligned_cols=68 Identities=12% Similarity=0.159 Sum_probs=57.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
.+.|.|.|+.++|++.+|..+|-+.|..|++.+..+..+.....+.+.+.+ ....++|.++|..+-..
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~--~~~l~~l~~~L~~~~~~ 72 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE--KQDFTYLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS--CCCHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC--CCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999988888776777777764 34688999988876544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.47 E-value=0.016 Score=52.34 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=53.7
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.+.|.|.|+.++|++.+|..+|.+.|++|+.+++.+..+.++..+.+.... ...++|.++|..+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~---~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP---SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH---HHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC---CCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999888776677776532 245677777766554
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.94 E-value=0.041 Score=50.11 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=44.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEEC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVA 397 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~ 397 (424)
.+.|.|.|+.++|++..|..+|.++|+.|+.+++.+..+.++-.+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 47899999999999999999999999999999999988866556666654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.69 E-value=0.11 Score=40.12 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=41.1
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEEC
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVA 397 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~ 397 (424)
+.|+|.+..++|+|.+|..+|.+.|+.|.+.++...++.....|.+.+.
T Consensus 6 ~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~ 54 (88)
T 2ko1_A 6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK 54 (88)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES
T ss_pred EEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC
Confidence 5788999999999999999999999999999998876644455666654
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.47 E-value=0.091 Score=47.24 Aligned_cols=69 Identities=10% Similarity=0.110 Sum_probs=53.3
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--------CEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--------QTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--------~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.|.|.|+.++|++.+|.++|-+.|++|..+...+.. +.++-.+.+.+. .....++|.++|..+...+
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999999998765 233334444443 3457888888888776654
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.46 E-value=0.049 Score=49.59 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC------CEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE------QTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~------~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.|+|.|+.++|++..|..+|-++|+.|+.+...+.. +.++-.+.+.+.. ... ++|.++|..+...+
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~--~~~-~~l~~~l~~~a~~l 166 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPF--PLY-QEVVTALSRVEEEF 166 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEG--GGH-HHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCC--Ccc-HHHHHHHHHHHHHc
Confidence 47899999999999999999999999999999999876 4444444444432 335 77777777666554
No 25
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=92.27 E-value=0.63 Score=45.34 Aligned_cols=67 Identities=4% Similarity=0.001 Sum_probs=51.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.+.|.|.|+.++|+...|...|-+.|+.|+.++-.+ ..+.++--+.+.+++ ..+.++|.+++..+-.
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD--DFDEAGFRAGLAERSE 76 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS--SCCHHHHHHHHHHHHG
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC--CCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999874 345544333344332 4678888888866533
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=91.95 E-value=0.51 Score=46.90 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=52.8
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.++|+|.|+.|+|+...|...|-+.|..|+.++-....+.++-.+.+.+... ..+.++|.++|..+-.
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~~~~ 79 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-VADGPALRHDVEAAIR 79 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-HHTSHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-cCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998887655555555421 1244677777665433
No 27
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=91.01 E-value=1.2 Score=43.80 Aligned_cols=70 Identities=11% Similarity=0.061 Sum_probs=52.6
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee--CCEEEEEEEEEECCCCccCHHHHHHHHHHHHHHh
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI--EQTVLYSFNVKVASETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~--~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~I 418 (424)
.+.|.|.|+.++|+...|...|-+.|+.|+.++-... ++.++--+.+.++ +...+.++|.++|..+-..+
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~-~~~~~~~~L~~~l~~la~~l 93 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD-TLPFDLDGFREAFTPIAEEF 93 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG-GSSSCHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC-CCCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999998865 4554333333332 22467888888887654443
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=90.40 E-value=0.66 Score=39.64 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=32.7
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEee
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTI 384 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~ 384 (424)
-|+|.|..|.|+|.+|+++|-+.++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999999999999766
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=90.34 E-value=0.83 Score=44.64 Aligned_cols=72 Identities=6% Similarity=0.127 Sum_probs=51.3
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEEC-CCCccCHHHHHHHHHHHHHHh
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVA-SETRFTADDIASSVQQVFSFI 418 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~-~~~~lsaEeI~qaL~qaL~~I 418 (424)
..+.|.|.|+.++|+...|...|-+.|+.|+.++-.+ ..+.++--+.+... .+...+.++|.++|..+-..+
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~la~~~ 83 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPIAERF 83 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999999999999999884 34554433333332 022467888888887654433
No 30
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=90.25 E-value=1.5 Score=42.79 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=52.5
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEECCCCccCHHHHHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVASETRFTADDIASSVQQVFSF 417 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~~ 417 (424)
.+.|.|.|+.++|+...|...|-+.|+.|+.++-.+ .++.++--+.+.+++ ...+.++|.++|..+-..
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~~L~~~f~~la~~ 76 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA-KVIPLASLRTGFGVIAAK 76 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS-CCCCHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC-CCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999998763 345554444455443 246788888888765443
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=88.78 E-value=0.62 Score=42.01 Aligned_cols=63 Identities=11% Similarity=0.257 Sum_probs=46.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
..|.|.+.+++|+|.+|..+|.+.|+.|.+.++.... +....+|++. . ..-..+.|.+.|.++
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~-~--d~~~leqI~kqL~Kl 68 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV-G--DEKVLEQIEKQLHKL 68 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE-S--CHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe-c--cHHHHHHHHHHHcCC
Confidence 4678889999999999999999999999999987654 4555666665 2 222345555555543
No 32
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=87.29 E-value=2 Score=41.86 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=43.8
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEe--eCCEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITT--IEQTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt--~~~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
..+.|.|.|+.++|+...|...|-+.|+.|+.++-.+ ..+.++- ++.+... ....++|.++|..
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm--r~~~~~~-~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM--RVSVEIP-VAGVNDFNSAFGK 71 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE--EEEEECC-C---CHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE--EEEEEcC-CCCHHHHHHHHHH
Confidence 3578999999999999999999999999999999863 3454433 3333321 1233455555543
No 33
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=84.91 E-value=0.87 Score=41.14 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=46.2
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
..|.|...+++|+|.+|..+|...|+.|.+.++.... +....+|++. . ..-..+.|.+.|.++
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~-~--d~~~leql~kQL~Kl 69 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN-G--PDEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE-E--CHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe-c--cHHHHHHHHHHhcCC
Confidence 4678889999999999999999999999999987554 4555677775 2 122345555555543
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.03 E-value=2.2 Score=40.52 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=44.0
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC-----CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE-----QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~-----~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
.+.|.|.+..|+|+|.+|+.+|-+.+..|.+.+..+.. +...-+ +++.+- ..++|.+.|++
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~---~Le~LL~kLrk 69 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG---DFEKILERVKT 69 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS---CHHHHHHHHHT
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC---CHHHHHHHHhC
Confidence 46788999999999999999999999999999998864 343322 666632 67777777764
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=80.87 E-value=2.5 Score=39.23 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=47.7
Q ss_pred EEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 349 AMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 349 v~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
-.|.|...+++|.|.+|...|...|+.|.+.++.... +....+|++.-. .-..++|.+.|.++
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~---e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD---DKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC---TTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC---HHHHHHHHHHhcCc
Confidence 4678888999999999999999999999999987543 455567777522 23467777766553
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=76.76 E-value=13 Score=31.31 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=39.8
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
|-+..+.+||.+.+++++|.+.|+.|...-.+..+......| ..+ ..+..+++|++.
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i--~~~-----d~~~A~~~L~~~ 131 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI--RPS-----NMDKCIEVLKEK 131 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE--EES-----CHHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE--EeC-----CHHHHHHHHHHc
Confidence 455667899999999999999999996654443344444334 332 577777777763
No 37
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=74.13 E-value=10 Score=33.15 Aligned_cols=65 Identities=15% Similarity=0.099 Sum_probs=44.0
Q ss_pred EEEeCCeEEEEEEecC---CCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSRR---RPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 342 V~i~g~ev~IkI~C~r---r~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|....+-+.|.|.... ++|.+.+++++|.+.|+.|...+ +....+ ++.+..+ ..++..++||+.|
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~i--s~vv~~~-----d~~~av~~Lh~~f 164 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKV--SVLIDEK-----YMELATRVLHKAF 164 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEGG-----GHHHHHHHHHHHT
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEE--EEEEeHH-----HHHHHHHHHHHHh
Confidence 4445566788888865 89999999999999999998854 434444 3333311 3556666666654
No 38
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=62.40 E-value=22 Score=30.88 Aligned_cols=67 Identities=24% Similarity=0.151 Sum_probs=47.3
Q ss_pred EEEEeCCeEEEEEEecC---CCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSRR---RPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~r---r~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.+..+-+.|.|.... .+|.+.+++++|.+.|+.|.-.+ +..-. .++.+..+ ..++..++|++.+.
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~--is~vv~~~-----d~~~Av~~Lh~~f~ 157 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVR--ISVIIPAE-----YAEAALRAVHQAFE 157 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSE--EEEEEEGG-----GHHHHHHHHHHHTC
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCE--EEEEEeHH-----HHHHHHHHHHHHHc
Confidence 55566777888888865 89999999999999999995543 22333 34445422 47777888887653
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=61.14 E-value=32 Score=29.81 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=36.8
Q ss_pred EEeCCeEEEEEEe-cCCCChHHHHHHHHHhCCCeEEEEEeEee---CCEEEEEEEEE
Q 014446 343 KLLGLDAMIKILS-RRRPGQLIKAIAALEDLQFNILHTNITTI---EQTVLYSFNVK 395 (424)
Q Consensus 343 ~i~g~ev~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsAnISt~---~~~vl~tf~vK 395 (424)
....+.+.|.|.. +.++|.+.+|+.+|.+.++.|.....+.. .+..-.+|++.
T Consensus 11 a~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~ 67 (167)
T 2dt9_A 11 ALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK 67 (167)
T ss_dssp EEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEE
T ss_pred EEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEe
Confidence 3445667777765 67899999999999999888866544322 23444567665
No 40
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=59.91 E-value=23 Score=31.59 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=48.2
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+|.+..+-+.|.|... ..+|++.+++++|.+.++.|.-.+ +.+-.+ ++.+.-. ..++..++||+.|.
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~I--s~vV~~~-----d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRI--SVLCRDT-----ELDKAVVALHEAFG 158 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEGG-----GHHHHHHHHHHHHT
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEeHH-----HHHHHHHHHHHHHc
Confidence 4455667778888765 578999999999999999988776 223333 4444422 57788888888773
No 41
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=59.75 E-value=33 Score=30.25 Aligned_cols=67 Identities=21% Similarity=0.253 Sum_probs=47.2
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.+.++-+.|.|... ..+|.+.+++++|.+.|+.|.-.+ +..-.+ +|.+.. -..+...++|++.|.
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV~~-----~d~~~Av~~Lh~~F~ 157 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIRE-----DDLDAAARALHEQFQ 157 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEG-----GGHHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEeH-----HHHHHHHHHHHHHHc
Confidence 3455677788888886 467999999999999999997744 334333 344432 247777888887763
No 42
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=59.41 E-value=43 Score=27.98 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=30.2
Q ss_pred EEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC
Q 014446 350 MIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ 386 (424)
Q Consensus 350 ~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~ 386 (424)
.|.|..+.++|.+.+|..+|.+.|+.|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 4566778999999999999999999998877654333
No 43
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=53.33 E-value=43 Score=29.47 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=35.3
Q ss_pred EEEeCCeEEEEEE-ecCCCChHHHHHHHHHhCCCeEEEEEeEee---CCEEEEEEEEE
Q 014446 342 VKLLGLDAMIKIL-SRRRPGQLIKAIAALEDLQFNILHTNITTI---EQTVLYSFNVK 395 (424)
Q Consensus 342 V~i~g~ev~IkI~-C~rr~GlL~kIL~ALEeLgLdVvsAnISt~---~~~vl~tf~vK 395 (424)
|....+.+.|.|. .+.++|.+.+|+++|.+.++.|.....++. ++..-.+|++.
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~ 66 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCP 66 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEE
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEc
Confidence 3444566777774 478899999999999999965554443333 22333445554
No 44
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.08 E-value=45 Score=28.96 Aligned_cols=53 Identities=21% Similarity=0.222 Sum_probs=36.0
Q ss_pred EEeCCeEEEEEEe-cCCCChHHHHHHHHHhCCCeEEEEEeEee-CCEEEEEEEEE
Q 014446 343 KLLGLDAMIKILS-RRRPGQLIKAIAALEDLQFNILHTNITTI-EQTVLYSFNVK 395 (424)
Q Consensus 343 ~i~g~ev~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsAnISt~-~~~vl~tf~vK 395 (424)
....+.+.|.|.. +.++|.+.+|+.+|.+.|+.|.....+.. ++....+|.+.
T Consensus 20 a~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 20 AFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp EEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred EecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 3445667788874 78899999999999999988876654322 23333455554
No 45
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.21 E-value=1.1e+02 Score=27.22 Aligned_cols=52 Identities=19% Similarity=0.168 Sum_probs=36.0
Q ss_pred EeCCeEEEEEEe-cCCCChHHHHHHHHHhCCCeEEEEEeEee---CCEEEEEEEEE
Q 014446 344 LLGLDAMIKILS-RRRPGQLIKAIAALEDLQFNILHTNITTI---EQTVLYSFNVK 395 (424)
Q Consensus 344 i~g~ev~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsAnISt~---~~~vl~tf~vK 395 (424)
...+.+.|+|.. +.++|.+.+|+.+|.+.++.|....-+.. ++..-.+|++.
T Consensus 12 ~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~ 67 (181)
T 3s1t_A 12 HDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 67 (181)
T ss_dssp EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEE
T ss_pred ecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEe
Confidence 345556666654 57899999999999999988866543222 34555667775
No 46
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=44.42 E-value=51 Score=31.62 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=46.0
Q ss_pred EEEEEEe---cCCCChHHHHHHHHHhCCCeEEEEEeEeeCCE-EEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 349 AMIKILS---RRRPGQLIKAIAALEDLQFNILHTNITTIEQT-VLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 349 v~IkI~C---~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~-vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
..|-+.. +.++|.|.++|..|...|++......-...+. --|.|.+.++ ...-+.+.++|.++
T Consensus 187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e---~~~d~~v~~aL~~L 253 (267)
T 2qmw_A 187 TSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD---SAITTDIKKVIAIL 253 (267)
T ss_dssp SEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES---CCSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe---cCCcHHHHHHHHHH
Confidence 3444555 68899999999999999999999888776653 3488888887 23335555555544
No 47
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=44.04 E-value=48 Score=27.82 Aligned_cols=49 Identities=6% Similarity=0.118 Sum_probs=38.2
Q ss_pred eEEEEEEecCCCChHHHHHHHHHhC---CCeEEEEEeEeeCCEEEEEEEEEEC
Q 014446 348 DAMIKILSRRRPGQLIKAIAALEDL---QFNILHTNITTIEQTVLYSFNVKVA 397 (424)
Q Consensus 348 ev~IkI~C~rr~GlL~kIL~ALEeL---gLdVvsAnISt~~~~vl~tf~vKv~ 397 (424)
++.+||.....+++...|.++++.. +.++ ..+-|.-+..+..++.+.+.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 4567777888999999999999987 6776 66777777777777777654
No 48
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=42.12 E-value=66 Score=32.27 Aligned_cols=66 Identities=21% Similarity=0.277 Sum_probs=46.2
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
.|.+..+-+.|.|... ..+|.+.+++++|.+.++.|.-.+ +..-.+ ++.+.-+ ..++..++||+.|
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~i--s~vV~~~-----d~~~Av~~Lh~~f 405 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIRED-----DLDAAARALHEQF 405 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEGG-----GHHHHHHHHHHHT
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEeHH-----HHHHHHHHHHHHH
Confidence 3445566677888875 478999999999999999997443 334333 4444422 4778888888776
No 49
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=41.44 E-value=56 Score=31.61 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=44.3
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
|-+..+.++|.|.++|..|...|++......-...+ .--|.|.+.+++. ..-+.+.++|.+
T Consensus 203 l~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~--~~d~~v~~aL~~ 264 (283)
T 2qmx_A 203 IVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH--REDQNVHNALEN 264 (283)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC--TTSHHHHHHHHH
T ss_pred EEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC--CCcHHHHHHHHH
Confidence 334446889999999999999999999988877765 3458899988742 223445555544
No 50
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=41.17 E-value=1.3e+02 Score=29.66 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=43.3
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEE-EEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 357 RRPGQLIKAIAALEDLQFNILHTNITTIEQTV-LYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 357 rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~v-l~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.++|.|.++|..|...|++......-...+.. -|.|.+.+++. +.-+.+.++|.++
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~AL~~L 273 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA--PWEERFRDALVEI 273 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC--TTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC--cCCHHHHHHHHHH
Confidence 57999999999999999999999888877654 48899998742 3334555565554
No 51
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=38.91 E-value=1.5e+02 Score=29.53 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=39.6
Q ss_pred EEEeCCeEEEEEE-ecCCCChHHHHHHHHHhCCCeEEEEEeEee---CCEEEEEEEEE
Q 014446 342 VKLLGLDAMIKIL-SRRRPGQLIKAIAALEDLQFNILHTNITTI---EQTVLYSFNVK 395 (424)
Q Consensus 342 V~i~g~ev~IkI~-C~rr~GlL~kIL~ALEeLgLdVvsAnISt~---~~~vl~tf~vK 395 (424)
|....+.+.|.|. .+.++|.+.+|+.+|.+.++.|.....++. .+....+|++.
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~ 315 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCP 315 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEe
Confidence 4455677888888 578899999999999999999887654332 23444566665
No 52
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=35.78 E-value=1.2e+02 Score=27.63 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=38.5
Q ss_pred EEEeCCeEEEEEEe-cCCCChHHHHHHHHHhCCCeEEEE--EeEee-CCEEEEEEEEE
Q 014446 342 VKLLGLDAMIKILS-RRRPGQLIKAIAALEDLQFNILHT--NITTI-EQTVLYSFNVK 395 (424)
Q Consensus 342 V~i~g~ev~IkI~C-~rr~GlL~kIL~ALEeLgLdVvsA--nISt~-~~~vl~tf~vK 395 (424)
|....+.+.|.|.. +.++|.+.+|+.+|.+.++.|--. +++.. .+....+|++.
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 34456677888764 788999999999999998776554 34433 34666778776
No 53
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=34.27 E-value=80 Score=30.99 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=44.6
Q ss_pred EEEEEec-CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEE-EEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 350 MIKILSR-RRPGQLIKAIAALEDLQFNILHTNITTIEQTV-LYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 350 ~IkI~C~-rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~v-l~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
.|-+..+ +++|.|.++|..|...|++......-...+.. -|.|.+.+++. +.-+.+.++|.++
T Consensus 203 Sl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~--~~d~~v~~aL~~L 267 (313)
T 3mwb_A 203 TVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH--ATDSRVADALAGL 267 (313)
T ss_dssp EEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC--TTSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC--CCcHHHHHHHHHH
Confidence 3444454 78999999999999999999888877665533 48888888642 2334455555543
No 54
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=31.05 E-value=1.3e+02 Score=30.72 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=47.1
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 342 V~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
|.+..+-+.|.|... ..+|+..+++++|.+.++.|.-.+-.+.+-.+ ++.+.- -..+...++||+.|
T Consensus 368 v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~I--s~vV~~-----~d~~~Av~aLH~~f 437 (446)
T 3tvi_A 368 IEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINV--IVGVET-----VDFEKAVKSIYNAF 437 (446)
T ss_dssp EEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEE--EEEEEG-----GGHHHHHHHHHHHH
T ss_pred EEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceE--EEEEcH-----HHHHHHHHHHHHHH
Confidence 444455567887764 47999999999999999999776644444443 444442 25777888888776
No 55
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=29.62 E-value=95 Score=25.07 Aligned_cols=40 Identities=3% Similarity=0.096 Sum_probs=31.6
Q ss_pred EEEEEEecCC--CChHHHHHHHHHhCCCeEEEEEeEee-CCEE
Q 014446 349 AMIKILSRRR--PGQLIKAIAALEDLQFNILHTNITTI-EQTV 388 (424)
Q Consensus 349 v~IkI~C~rr--~GlL~kIL~ALEeLgLdVvsAnISt~-~~~v 388 (424)
+.|+|.|... ..+...++++|+..++.+.......+ ++.+
T Consensus 9 Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~v 51 (94)
T 2lqj_A 9 YQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNI 51 (94)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCE
T ss_pred EEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeE
Confidence 6899999864 56888899999999999999995553 3434
No 56
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=29.51 E-value=81 Score=32.24 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=45.6
Q ss_pred EEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 342 VKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 342 V~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
|.+..+-+.|.|... ..+|.+.+++++|.+.|+.|.-.+-.+..-.+ ++.+.-+ ..+...++||+.|-
T Consensus 398 v~~~~~~a~vsvVG~gm~~~~Gvaak~f~aL~~~~InI~misqgtSe~~I--s~vV~~~-----d~~~Av~aLh~~f~ 468 (473)
T 3c1m_A 398 VSVDKDVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNI--SFVIDEK-----DLLNCVRKLHEKFI 468 (473)
T ss_dssp EEEEEEEEEEEEECTTTTTCTTHHHHHHHHHHHHTCCCCEEEESSCSSEE--EEEEEGG-----GHHHHHHHHHHHHT
T ss_pred EEEeCCcEEEEEEecCCCCChhHHHHHHHHHHHCCCCEEEEecCCCCceE--EEEEcHH-----HHHHHHHHHHHHHh
Confidence 333445567777774 37899999999999999999544433334343 4444422 47888888888764
No 57
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=28.85 E-value=64 Score=27.63 Aligned_cols=67 Identities=16% Similarity=0.072 Sum_probs=42.7
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
.|.+..+-++|.|... ..+|++.+++.+|. ++.|.-.+-.+.+-.+ +|.+.- -..+...++||+.|.
T Consensus 81 ~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~i--s~vv~~-----~d~~~a~~~Lh~~f~ 150 (157)
T 3mah_A 81 DVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNV--SVLVKA-----EDKKKALIALSNKLF 150 (157)
T ss_dssp EEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCE--EEEEEG-----GGHHHHHHHHHHHHH
T ss_pred eEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEE--EEEEcH-----HHHHHHHHHHHHHHh
Confidence 3444556678888775 47899999999999 7776654433333332 444442 257888888888774
No 58
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.10 E-value=64 Score=22.42 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 245 GDQASIIGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 245 ~dKaSIL~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
+..+..|+++-+-|..|+.+++.|+.+|-.
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999988754
No 59
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.79 E-value=74 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 014446 251 IGGAIEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 251 L~eAI~YIk~Lq~~v~~Le~ek~~ 274 (424)
+.+--+||++|+++-.+|+.-++.
T Consensus 5 vkelknyiqeleernaelknlkeh 28 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEH 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHH
Confidence 557789999999999988876653
No 60
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=26.41 E-value=1.8e+02 Score=24.11 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=38.8
Q ss_pred EEEEEeCCeEEEEEEecCC---CChHHHHHHHHHhC-CCe-EEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 340 VEVKLLGLDAMIKILSRRR---PGQLIKAIAALEDL-QFN-ILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 340 VEV~i~g~ev~IkI~C~rr---~GlL~kIL~ALEeL-gLd-VvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
+||+..+++-+..|...+. ..-=.++|+.|.++ +|. =.-++++..+..+ ||++.- ....+++.+|+++.-..
T Consensus 1 ~ev~~~~deeygYIvt~~~~l~~~~G~~l~~~la~~l~l~~~~F~~isV~g~aV--TFrV~~-N~~n~taadVA~~a~~~ 77 (99)
T 4hti_A 1 MEVQPSEEEARGYIVTDRDPLRPEEGRRLVEDVARLLQVPSSAFADVEVLGPAV--TFKVSA-NVQNVTTEDVEKATVDN 77 (99)
T ss_dssp ---------CCEEEEESCSSCCHHHHHHHHHHHHHHTTCCGGGEEEEEEETTEE--EEEECC-CTTCCCHHHHHHHHHHT
T ss_pred CccccCCcceeEEEEECCCCCCHHHHHHHHHHHHHHhCCchhheeeeeecCceE--EEEecc-CCCCCCHHHHHHHHHHH
Confidence 3566666664444444433 23356677777443 555 2345566666665 677763 35578999988876554
Q ss_pred HHHh
Q 014446 415 FSFI 418 (424)
Q Consensus 415 L~~I 418 (424)
-..|
T Consensus 78 K~~L 81 (99)
T 4hti_A 78 KDKL 81 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 61
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=26.05 E-value=2.3e+02 Score=25.73 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=45.4
Q ss_pred EEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 341 EVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 341 EV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
+|.+..+-+.|.|... ..+|+..+++.+|-+.++.|.-.+ +..=.+ ++.+.- -..+..+++||++|.
T Consensus 108 ~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi~I--S~vV~~-----~d~~~Av~aLH~~F~ 177 (200)
T 4go7_X 108 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRI--SVLCRD-----TELDKAVVALHEAFG 177 (200)
T ss_dssp EEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEG-----GGHHHHHHHHHHHHT
T ss_pred eEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCCEE--EEEEeH-----HHHHHHHHHHHHHhC
Confidence 3444555566776654 478999999999999998887665 222232 344441 257888888888874
No 62
>1g70_B RSG-1.2 peptide; peptide-RNA complex, non-canonical base pairs, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.3.1
Probab=24.40 E-value=42 Score=21.07 Aligned_cols=10 Identities=40% Similarity=0.680 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 014446 217 AVERNRRKQM 226 (424)
Q Consensus 217 ~aER~RR~km 226 (424)
-+||+||...
T Consensus 11 gaerrrrraa 20 (26)
T 1g70_B 11 GAERRRRRAA 20 (26)
T ss_pred hHHHHHHHHH
Confidence 5778777643
No 63
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=23.13 E-value=87 Score=26.77 Aligned_cols=37 Identities=16% Similarity=-0.099 Sum_probs=28.4
Q ss_pred EeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEE
Q 014446 344 LLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTN 380 (424)
Q Consensus 344 i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAn 380 (424)
...+-+.|.|... ..+|.+.+|+.+|.+.++.|....
T Consensus 14 ~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~ 53 (157)
T 3mah_A 14 AKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVA 53 (157)
T ss_dssp EEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEE
T ss_pred ecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEE
Confidence 3445567888754 357899999999999999886665
No 64
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.11 E-value=86 Score=20.13 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=14.7
Q ss_pred CCccchHHHHHHHHHHHHH
Q 014446 245 GDQASIIGGAIEFVRELEQ 263 (424)
Q Consensus 245 ~dKaSIL~eAI~YIk~Lq~ 263 (424)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4566789999999976655
No 65
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=22.52 E-value=3.6e+02 Score=27.76 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=44.1
Q ss_pred CeEEEEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeC--CEEEEEEEEEECCCCccCHHHHHHHHHH
Q 014446 347 LDAMIKILSRRRPGQLIKAIAALEDLQFNILHTNITTIE--QTVLYSFNVKVASETRFTADDIASSVQQ 413 (424)
Q Consensus 347 ~ev~IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~--~~vl~tf~vKv~~~~~lsaEeI~qaL~q 413 (424)
...+|-|.-..+||.+.+|...|-+.++.|-+..+.... +..+..+.+ .+ .+ .+++.+.|.+
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v--d~--~~-~~~~l~~l~~ 516 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL--DQ--DV-PDDVRTAIAA 516 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE--SS--CC-CHHHHHHHHH
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE--CC--CC-CHHHHHHHhc
Confidence 345677777899999999999999999999999998753 444444444 32 22 3555555554
No 66
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.47 E-value=67 Score=23.49 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014446 255 IEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 255 I~YIk~Lq~~v~~Le~ek~~ 274 (424)
-.||..|+.+++.|+.....
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999887764
No 67
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=22.27 E-value=83 Score=32.43 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=42.7
Q ss_pred EEEEecCCCChHHHHHHHHHhCCCeEEEEEeEeeCC-EEEEEEEEEECCCCccCHHHHHHHHHHH
Q 014446 351 IKILSRRRPGQLIKAIAALEDLQFNILHTNITTIEQ-TVLYSFNVKVASETRFTADDIASSVQQV 414 (424)
Q Consensus 351 IkI~C~rr~GlL~kIL~ALEeLgLdVvsAnISt~~~-~vl~tf~vKv~~~~~lsaEeI~qaL~qa 414 (424)
|-+..+.++|.|.++|..|...|+++.+...-...+ .--|.|.+.++ ...-+.|.++|..+
T Consensus 37 LiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e---h~~d~~v~~AL~eL 98 (429)
T 1phz_A 37 LIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD---KRTKPVLGSIIKSL 98 (429)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC---GGGHHHHHHHHHHH
T ss_pred EEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe---eCCCHHHHHHHHHH
Confidence 334446789999999999999999998888776654 33488888776 23333455555443
No 68
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=22.03 E-value=65 Score=23.83 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 014446 255 IEFVRELEQLLQCLESQKRR 274 (424)
Q Consensus 255 I~YIk~Lq~~v~~Le~ek~~ 274 (424)
-.||..|+++|+.|+..+..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999987653
No 69
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.64 E-value=1.3e+02 Score=24.53 Aligned_cols=25 Identities=0% Similarity=0.092 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHhCCCeEEEEEeEeeC
Q 014446 360 GQLIKAIAALEDLQFNILHTNITTIE 385 (424)
Q Consensus 360 GlL~kIL~ALEeLgLdVvsAnISt~~ 385 (424)
.++..|++.|..+| +|+.+++..-.
T Consensus 27 ~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 27 ALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp HHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred HHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 47899999999999 89999876633
No 70
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=20.80 E-value=81 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.0
Q ss_pred chHHHHHHHHHHHHHHHH
Q 014446 249 SIIGGAIEFVRELEQLLQ 266 (424)
Q Consensus 249 SIL~eAI~YIk~Lq~~v~ 266 (424)
|-|-+|-.|+.+|+.+++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456788899988888765
No 71
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=20.14 E-value=2.3e+02 Score=29.89 Aligned_cols=68 Identities=28% Similarity=0.271 Sum_probs=48.9
Q ss_pred EEEEEeCCeEEEEEEec---CCCChHHHHHHHHHhCCCeEEEEEeEeeCCEEEEEEEEEECCCCccCHHHHHHHHHHHHH
Q 014446 340 VEVKLLGLDAMIKILSR---RRPGQLIKAIAALEDLQFNILHTNITTIEQTVLYSFNVKVASETRFTADDIASSVQQVFS 416 (424)
Q Consensus 340 VEV~i~g~ev~IkI~C~---rr~GlL~kIL~ALEeLgLdVvsAnISt~~~~vl~tf~vKv~~~~~lsaEeI~qaL~qaL~ 416 (424)
-+|.+..+-+.|.|... ..+|++.+++++|.+.++.|.-.+ +.+-.+ ++.+.- -..+...++||+.|.
T Consensus 347 ~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe~~I--s~vI~~-----~d~~~Av~aLh~~f~ 417 (600)
T 3l76_A 347 AEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEVKV--SCVIDQ-----RDADRAIAALSNAFG 417 (600)
T ss_dssp SEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECSSEE--EEEEEG-----GGHHHHHHHHHHHTT
T ss_pred ceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCCCEE--EEEEcH-----HHHHHHHHHHHHhhc
Confidence 35666777889999886 479999999999999999997776 222222 344431 247778888888764
No 72
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=20.02 E-value=1.2e+02 Score=25.88 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHhCC--CeEEEEEeEeeCCEEEEE-EEEEECCCCccCHHHHHHHHHHHH
Q 014446 358 RPGQLIKAIAALEDLQ--FNILHTNITTIEQTVLYS-FNVKVASETRFTADDIASSVQQVF 415 (424)
Q Consensus 358 r~GlL~kIL~ALEeLg--LdVvsAnISt~~~~vl~t-f~vKv~~~~~lsaEeI~qaL~qaL 415 (424)
..|+|.++++.+..+| ++|+.++|-.......|+ +.|..+ ..-..++|...|++.-
T Consensus 14 DSgil~~~LD~I~d~GG~F~I~~f~vG~~k~d~SyA~l~V~a~--d~e~L~~Il~~L~~lG 72 (118)
T 3mgj_A 14 DSLILPKVFDKILDMGGDYKVLEFEIGKRKTDPSYAKILVIGR--DERHVDEILNELRDLG 72 (118)
T ss_dssp TSSHHHHHHHHHHHTTCEEEEEEEECCSSTTSCEEEEEEEEES--SHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEEEEecCCCCCCcceEEEEEecC--CHHHHHHHHHHHHHcC
Confidence 4799999999999986 889999998766544444 555544 2234566666666553
Done!