Query 014447
Match_columns 424
No_of_seqs 128 out of 1689
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:12:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014447.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014447hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00196 alpha-amylase; Provis 100.0 1.3E-81 2.7E-86 620.6 44.8 415 9-423 10-427 (428)
2 PLN02361 alpha-amylase 100.0 1.8E-74 4E-79 562.9 41.4 387 22-423 10-401 (401)
3 PLN02784 alpha-amylase 100.0 9.9E-69 2.1E-73 547.8 42.3 392 22-423 501-893 (894)
4 PRK10785 maltodextrin glucosid 100.0 4.6E-65 1E-69 526.8 27.9 353 15-398 113-559 (598)
5 PRK09441 cytoplasmic alpha-amy 100.0 2.5E-62 5.4E-67 496.7 39.5 355 22-398 2-429 (479)
6 TIGR02456 treS_nterm trehalose 100.0 1.3E-61 2.8E-66 497.4 34.1 360 19-399 1-490 (539)
7 PRK09505 malS alpha-amylase; R 100.0 5.1E-61 1.1E-65 495.5 31.1 353 15-397 181-681 (683)
8 TIGR02403 trehalose_treC alpha 100.0 2.7E-60 5.8E-65 486.7 33.9 361 20-400 1-502 (543)
9 PRK10933 trehalose-6-phosphate 100.0 5.3E-60 1.2E-64 483.6 34.2 363 17-400 4-508 (551)
10 PF00128 Alpha-amylase: Alpha 100.0 1.3E-53 2.9E-58 411.6 13.0 287 40-348 1-309 (316)
11 TIGR02402 trehalose_TreZ malto 100.0 2.1E-51 4.6E-56 419.5 28.9 339 22-399 92-536 (542)
12 PRK12313 glycogen branching en 100.0 5E-51 1.1E-55 426.1 31.2 354 23-417 147-585 (633)
13 TIGR01515 branching_enzym alph 100.0 2.3E-50 4.9E-55 418.5 31.6 352 24-416 139-571 (613)
14 TIGR02104 pulA_typeI pullulana 100.0 1E-50 2.3E-55 421.3 27.6 360 24-416 128-599 (605)
15 PRK14706 glycogen branching en 100.0 9.1E-49 2E-53 404.2 31.9 354 24-417 145-580 (639)
16 PRK05402 glycogen branching en 100.0 6.5E-49 1.4E-53 414.8 31.3 354 24-417 242-681 (726)
17 TIGR02100 glgX_debranch glycog 100.0 6E-49 1.3E-53 409.2 29.4 359 22-415 154-660 (688)
18 TIGR03852 sucrose_gtfA sucrose 100.0 5E-48 1.1E-52 380.9 26.7 337 23-397 1-460 (470)
19 PRK03705 glycogen debranching 100.0 1.1E-47 2.4E-52 396.8 27.3 354 22-413 149-631 (658)
20 PRK13840 sucrose phosphorylase 100.0 7.4E-47 1.6E-51 374.9 31.5 328 22-387 2-453 (495)
21 PRK12568 glycogen branching en 100.0 1.6E-46 3.5E-51 386.4 30.8 355 24-417 247-686 (730)
22 PRK14510 putative bifunctional 100.0 5.5E-47 1.2E-51 414.6 26.7 320 23-376 158-580 (1221)
23 PRK14705 glycogen branching en 100.0 3.4E-45 7.3E-50 393.6 29.3 354 24-418 748-1181(1224)
24 PLN02960 alpha-amylase 100.0 2.5E-44 5.5E-49 370.4 32.3 356 22-417 394-847 (897)
25 TIGR02102 pullulan_Gpos pullul 100.0 5.3E-44 1.2E-48 382.3 32.1 345 23-400 451-949 (1111)
26 PLN02447 1,4-alpha-glucan-bran 100.0 3E-42 6.5E-47 355.6 30.9 352 24-417 230-687 (758)
27 COG0366 AmyA Glycosidases [Car 100.0 1.1E-42 2.5E-47 357.7 26.5 364 24-398 1-484 (505)
28 KOG0471 Alpha-amylase [Carbohy 100.0 9.6E-43 2.1E-47 354.9 24.9 375 17-397 11-502 (545)
29 TIGR02455 TreS_stutzeri trehal 100.0 1.3E-40 2.8E-45 331.3 30.6 352 24-398 52-630 (688)
30 TIGR02103 pullul_strch alpha-1 100.0 1E-38 2.2E-43 335.7 26.1 188 24-231 253-529 (898)
31 COG0296 GlgB 1,4-alpha-glucan 100.0 1.7E-38 3.7E-43 320.0 23.0 317 38-398 160-559 (628)
32 PLN02877 alpha-amylase/limit d 100.0 1.2E-36 2.7E-41 319.1 27.0 190 24-232 340-601 (970)
33 TIGR02401 trehalose_TreY malto 100.0 2.2E-35 4.7E-40 306.1 28.6 192 39-231 12-287 (825)
34 COG1523 PulA Type II secretory 100.0 8E-36 1.7E-40 305.5 21.1 171 22-212 170-369 (697)
35 KOG2212 Alpha-amylase [Carbohy 100.0 2.2E-34 4.8E-39 262.8 24.6 345 18-398 22-440 (504)
36 PLN03244 alpha-amylase; Provis 100.0 1.7E-30 3.6E-35 263.6 25.7 299 76-417 427-822 (872)
37 KOG0470 1,4-alpha-glucan branc 100.0 1.7E-30 3.7E-35 259.7 18.3 147 39-207 251-407 (757)
38 PRK14511 maltooligosyl trehalo 100.0 1.2E-29 2.6E-34 264.5 22.3 190 39-229 16-330 (879)
39 smart00642 Aamy Alpha-amylase 99.9 2.1E-27 4.5E-32 206.4 10.6 93 24-118 1-97 (166)
40 PRK14507 putative bifunctional 99.9 5E-21 1.1E-25 211.5 16.7 79 39-118 754-834 (1693)
41 TIGR01531 glyc_debranch glycog 99.8 2.6E-18 5.7E-23 184.7 27.7 82 39-121 128-215 (1464)
42 COG3280 TreY Maltooligosyl tre 99.8 4.4E-19 9.5E-24 177.6 13.4 80 39-119 15-96 (889)
43 PF14701 hDGE_amylase: glucano 99.3 4E-11 8.6E-16 116.9 14.9 82 39-121 18-107 (423)
44 PF14872 GHL5: Hypothetical gl 99.2 9.2E-10 2E-14 109.7 17.2 151 20-207 175-393 (811)
45 KOG3625 Alpha amylase [Carbohy 99.0 9.1E-09 2E-13 105.9 15.8 81 39-120 138-226 (1521)
46 PF02324 Glyco_hydro_70: Glyco 98.9 7.9E-08 1.7E-12 97.0 16.8 204 163-387 137-422 (809)
47 PF02324 Glyco_hydro_70: Glyco 98.7 3.1E-08 6.8E-13 99.8 7.5 94 24-117 565-673 (809)
48 PF14871 GHL6: Hypothetical gl 98.6 9E-07 2E-11 73.6 11.6 129 46-203 3-132 (132)
49 PF02638 DUF187: Glycosyl hydr 98.5 1.6E-06 3.4E-11 83.4 12.6 142 41-203 17-162 (311)
50 smart00810 Alpha-amyl_C2 Alpha 98.3 3.8E-06 8.2E-11 59.0 8.0 56 368-423 6-61 (61)
51 PRK14508 4-alpha-glucanotransf 98.3 0.00013 2.8E-09 74.3 21.0 45 23-68 7-52 (497)
52 PLN02635 disproportionating en 98.1 0.00021 4.6E-09 73.0 18.7 44 24-68 31-75 (538)
53 PF07821 Alpha-amyl_C2: Alpha- 97.8 7.5E-05 1.6E-09 52.1 6.6 52 368-423 6-59 (59)
54 COG1649 Uncharacterized protei 97.8 8.2E-05 1.8E-09 73.0 9.4 142 40-204 61-208 (418)
55 cd06593 GH31_xylosidase_YicI Y 97.8 0.00027 5.9E-09 68.1 11.7 135 41-209 22-163 (308)
56 PRK14510 putative bifunctional 97.8 0.00078 1.7E-08 75.9 16.6 44 24-67 726-770 (1221)
57 PF02446 Glyco_hydro_77: 4-alp 97.7 0.00013 2.7E-09 74.9 8.9 59 28-87 2-64 (496)
58 PF11941 DUF3459: Domain of un 97.6 0.00012 2.6E-09 56.7 5.7 47 354-400 1-54 (89)
59 PF02065 Melibiase: Melibiase; 97.5 0.0017 3.7E-08 64.2 13.2 138 42-207 57-195 (394)
60 cd06592 GH31_glucosidase_KIAA1 97.4 0.0023 5E-08 61.5 12.9 132 41-206 28-166 (303)
61 TIGR00217 malQ 4-alpha-glucano 97.3 0.017 3.6E-07 59.4 17.6 44 24-68 17-61 (513)
62 PRK09936 hypothetical protein; 97.2 0.0037 8.1E-08 58.1 11.3 191 1-221 1-200 (296)
63 PF13200 DUF4015: Putative gly 97.2 0.003 6.4E-08 60.4 10.3 133 40-205 10-147 (316)
64 cd06597 GH31_transferase_CtsY 97.0 0.0018 3.8E-08 63.2 7.2 149 41-206 22-188 (340)
65 PF13199 Glyco_hydro_66: Glyco 96.8 0.0054 1.2E-07 63.1 9.4 145 41-205 116-268 (559)
66 PF14488 DUF4434: Domain of un 96.8 0.0058 1.3E-07 53.1 8.1 88 24-116 3-90 (166)
67 PRK10426 alpha-glucosidase; Pr 96.7 0.016 3.4E-07 61.3 12.0 152 17-208 204-366 (635)
68 cd06594 GH31_glucosidase_YihQ 96.7 0.0058 1.3E-07 59.1 8.2 138 41-208 21-169 (317)
69 cd06599 GH31_glycosidase_Aec37 96.7 0.017 3.7E-07 55.8 11.4 133 43-205 29-168 (317)
70 cd06591 GH31_xylosidase_XylS X 96.3 0.016 3.5E-07 56.0 8.2 132 41-206 22-160 (319)
71 PRK14582 pgaB outer membrane N 96.1 0.057 1.2E-06 57.0 11.5 130 42-203 333-466 (671)
72 cd06600 GH31_MGAM-like This fa 96.0 0.023 5.1E-07 54.9 8.0 137 41-206 22-161 (317)
73 PRK10658 putative alpha-glucos 96.0 0.021 4.6E-07 60.6 8.0 131 44-208 284-421 (665)
74 cd06598 GH31_transferase_CtsZ 96.0 0.025 5.3E-07 54.8 7.8 134 41-205 22-164 (317)
75 PRK11052 malQ 4-alpha-glucanot 95.7 0.082 1.8E-06 56.3 11.1 44 24-67 145-189 (695)
76 cd06602 GH31_MGAM_SI_GAA This 95.6 0.052 1.1E-06 53.0 8.5 141 41-207 22-167 (339)
77 PF05913 DUF871: Bacterial pro 95.5 0.022 4.7E-07 55.7 5.2 59 41-114 12-70 (357)
78 PLN03236 4-alpha-glucanotransf 95.4 0.033 7.1E-07 59.2 6.5 76 18-94 57-139 (745)
79 cd06604 GH31_glucosidase_II_Ma 95.3 0.057 1.2E-06 52.8 7.4 135 41-205 22-159 (339)
80 PF00150 Cellulase: Cellulase 95.1 0.031 6.7E-07 52.6 5.0 79 22-114 5-85 (281)
81 COG3589 Uncharacterized conser 95.1 0.073 1.6E-06 50.4 7.1 67 27-114 6-72 (360)
82 COG1501 Alpha-glucosidases, fa 95.0 0.088 1.9E-06 56.7 8.6 90 92-208 322-418 (772)
83 PLN02950 4-alpha-glucanotransf 95.0 0.065 1.4E-06 58.7 7.6 77 18-95 257-340 (909)
84 PF01055 Glyco_hydro_31: Glyco 95.0 0.04 8.7E-07 55.9 5.7 139 41-207 41-182 (441)
85 cd06542 GH18_EndoS-like Endo-b 94.7 0.15 3.3E-06 47.5 8.6 64 89-203 49-112 (255)
86 KOG1065 Maltase glucoamylase a 94.6 0.25 5.5E-06 52.4 10.4 135 40-204 308-447 (805)
87 PRK11052 malQ 4-alpha-glucanot 94.2 0.12 2.6E-06 55.1 7.1 56 40-97 165-223 (695)
88 cd06595 GH31_xylosidase_XylS-l 94.0 0.14 3E-06 48.9 6.7 129 41-205 23-159 (292)
89 PF07745 Glyco_hydro_53: Glyco 93.5 0.22 4.8E-06 48.2 7.0 57 46-116 27-83 (332)
90 cd06565 GH20_GcnA-like Glycosy 93.1 0.86 1.9E-05 43.7 10.3 114 41-195 15-131 (301)
91 PF02449 Glyco_hydro_42: Beta- 92.7 0.17 3.7E-06 50.2 5.1 123 43-205 10-138 (374)
92 cd06601 GH31_lyase_GLase GLase 92.5 0.45 9.7E-06 46.3 7.6 110 41-205 22-133 (332)
93 PLN02763 hydrolase, hydrolyzin 92.1 0.35 7.5E-06 53.2 6.8 134 42-205 200-336 (978)
94 cd06589 GH31 The enzymes of gl 92.0 1.4 3.1E-05 41.3 10.2 65 40-113 21-88 (265)
95 cd06603 GH31_GANC_GANAB_alpha 91.9 0.5 1.1E-05 46.1 7.2 136 41-205 22-162 (339)
96 COG1640 MalQ 4-alpha-glucanotr 91.7 4.2 9E-05 41.7 13.5 44 25-68 16-61 (520)
97 cd02875 GH18_chitobiase Chitob 91.4 0.45 9.7E-06 46.9 6.3 31 174-204 91-121 (358)
98 smart00632 Aamy_C Aamy_C domai 91.2 0.3 6.5E-06 36.8 3.8 23 377-399 5-27 (81)
99 COG3867 Arabinogalactan endo-1 91.2 0.86 1.9E-05 42.7 7.3 57 46-113 66-126 (403)
100 cd02871 GH18_chitinase_D-like 91.1 1 2.2E-05 43.4 8.4 63 88-204 57-119 (312)
101 cd06545 GH18_3CO4_chitinase Th 91.0 0.87 1.9E-05 42.4 7.6 30 175-204 79-108 (253)
102 TIGR01370 cysRS possible cyste 90.7 0.9 2E-05 43.6 7.4 40 166-206 132-171 (315)
103 cd06562 GH20_HexA_HexB-like Be 90.7 2.4 5.2E-05 41.6 10.6 125 42-195 17-149 (348)
104 cd06570 GH20_chitobiase-like_1 90.6 3 6.5E-05 40.2 10.9 125 42-194 17-146 (311)
105 PLN03059 beta-galactosidase; P 90.4 0.74 1.6E-05 49.6 7.1 100 4-113 6-120 (840)
106 PRK14507 putative bifunctional 89.8 0.48 1E-05 55.0 5.5 69 24-93 174-248 (1693)
107 COG2342 Predicted extracellula 89.7 7.3 0.00016 36.3 12.0 123 42-207 29-151 (300)
108 PF01301 Glyco_hydro_35: Glyco 89.1 0.38 8.2E-06 46.5 3.5 61 44-114 25-86 (319)
109 PF03198 Glyco_hydro_72: Gluca 88.9 0.86 1.9E-05 43.3 5.6 55 45-121 55-109 (314)
110 PF10566 Glyco_hydro_97: Glyco 88.9 3 6.5E-05 39.2 9.2 64 39-110 28-92 (273)
111 TIGR03849 arch_ComA phosphosul 88.6 1.3 2.7E-05 40.6 6.2 45 48-111 76-120 (237)
112 cd02742 GH20_hexosaminidase Be 88.2 1.8 3.9E-05 41.5 7.5 123 41-194 14-147 (303)
113 TIGR03356 BGL beta-galactosida 87.9 1.8 4E-05 43.6 7.7 65 40-112 51-115 (427)
114 PLN03236 4-alpha-glucanotransf 87.9 0.82 1.8E-05 48.9 5.3 30 91-121 274-303 (745)
115 smart00812 Alpha_L_fucos Alpha 87.7 5.4 0.00012 39.6 10.6 133 46-222 84-225 (384)
116 cd06564 GH20_DspB_LnbB-like Gl 87.6 4.1 8.8E-05 39.5 9.7 129 41-201 15-163 (326)
117 cd06569 GH20_Sm-chitobiase-lik 86.0 3.2 6.9E-05 42.1 8.2 93 18-117 3-124 (445)
118 PF13204 DUF4038: Protein of u 85.6 2 4.4E-05 40.9 6.2 70 41-115 28-110 (289)
119 PRK15452 putative protease; Pr 85.0 6.9 0.00015 39.7 9.9 54 40-109 11-64 (443)
120 PF01120 Alpha_L_fucos: Alpha- 84.4 10 0.00022 37.2 10.7 142 47-227 95-243 (346)
121 PLN02950 4-alpha-glucanotransf 84.3 2.6 5.6E-05 46.6 7.0 30 91-121 461-490 (909)
122 PF02679 ComA: (2R)-phospho-3- 84.1 1.9 4.2E-05 39.7 5.1 55 39-112 73-134 (244)
123 COG3280 TreY Maltooligosyl tre 84.0 1 2.3E-05 47.3 3.6 72 157-228 258-332 (889)
124 cd06568 GH20_SpHex_like A subg 83.8 3.6 7.8E-05 40.0 7.1 126 41-195 16-154 (329)
125 PF02806 Alpha-amylase_C: Alph 83.6 2.8 6.2E-05 32.3 5.3 43 377-419 6-59 (95)
126 PF11852 DUF3372: Domain of un 82.9 0.75 1.6E-05 39.7 1.8 49 352-400 44-116 (168)
127 PF14883 GHL13: Hypothetical g 82.9 30 0.00065 32.7 12.3 122 45-201 19-142 (294)
128 cd06563 GH20_chitobiase-like T 81.2 19 0.00041 35.4 11.2 126 42-194 17-164 (357)
129 PF01373 Glyco_hydro_14: Glyco 80.7 2.2 4.7E-05 42.1 4.3 67 39-119 12-81 (402)
130 PLN02803 beta-amylase 78.0 7.8 0.00017 39.5 7.3 67 39-119 100-172 (548)
131 cd02874 GH18_CFLE_spore_hydrol 77.3 8.8 0.00019 36.9 7.4 31 174-204 82-112 (313)
132 PF08821 CGGC: CGGC domain; I 77.2 9 0.0002 30.5 6.1 54 42-109 51-104 (107)
133 PF07555 NAGidase: beta-N-acet 76.1 20 0.00043 34.4 9.3 97 42-201 14-110 (306)
134 PF00728 Glyco_hydro_20: Glyco 75.9 2.9 6.2E-05 40.9 3.7 137 41-201 16-162 (351)
135 PRK09856 fructoselysine 3-epim 75.5 40 0.00086 31.4 11.3 51 44-108 14-64 (275)
136 PLN02801 beta-amylase 74.9 9.9 0.00021 38.6 7.0 65 41-119 35-102 (517)
137 cd00598 GH18_chitinase-like Th 74.7 16 0.00034 32.5 8.0 31 175-205 84-114 (210)
138 PF01136 Peptidase_U32: Peptid 74.7 43 0.00094 30.4 11.0 35 181-217 156-190 (233)
139 COG2730 BglC Endoglucanase [Ca 74.5 6.5 0.00014 39.5 5.8 61 45-113 75-138 (407)
140 PRK10076 pyruvate formate lyas 74.4 13 0.00028 33.7 7.2 21 89-109 191-211 (213)
141 PTZ00445 p36-lilke protein; Pr 73.8 8.6 0.00019 34.6 5.7 60 43-109 29-96 (219)
142 PRK13210 putative L-xylulose 5 73.5 46 0.00099 31.1 11.2 54 44-109 17-70 (284)
143 COG1242 Predicted Fe-S oxidore 72.9 16 0.00035 34.2 7.4 56 87-203 164-219 (312)
144 PLN00197 beta-amylase; Provisi 70.9 14 0.00031 37.8 7.1 64 42-119 126-192 (573)
145 PLN02905 beta-amylase 70.8 14 0.00031 38.4 7.1 66 40-119 283-351 (702)
146 COG0826 Collagenase and relate 70.4 35 0.00076 33.4 9.6 53 47-111 17-69 (347)
147 COG1306 Uncharacterized conser 70.3 16 0.00036 34.4 6.8 137 43-204 77-218 (400)
148 PF13380 CoA_binding_2: CoA bi 70.2 8.9 0.00019 31.0 4.7 43 42-109 65-107 (116)
149 KOG0496 Beta-galactosidase [Ca 70.0 8.2 0.00018 40.3 5.3 61 45-116 51-113 (649)
150 PLN02161 beta-amylase 70.0 16 0.00036 37.1 7.3 66 40-119 114-182 (531)
151 KOG2730 Methylase [General fun 69.5 3.8 8.3E-05 36.9 2.5 44 39-83 149-192 (263)
152 PRK08207 coproporphyrinogen II 69.1 12 0.00027 38.4 6.5 62 47-117 270-332 (488)
153 cd00019 AP2Ec AP endonuclease 68.4 66 0.0014 30.1 11.0 54 43-109 10-64 (279)
154 PRK07094 biotin synthase; Prov 68.3 11 0.00023 36.4 5.7 39 79-119 155-193 (323)
155 PRK05628 coproporphyrinogen II 68.1 12 0.00026 37.1 6.0 33 86-118 139-172 (375)
156 TIGR01211 ELP3 histone acetylt 67.9 9.7 0.00021 39.4 5.5 62 47-117 207-268 (522)
157 TIGR00433 bioB biotin syntheta 67.9 14 0.00031 35.0 6.4 59 47-115 124-182 (296)
158 TIGR01210 conserved hypothetic 67.8 11 0.00025 36.2 5.7 59 47-114 118-178 (313)
159 PLN02705 beta-amylase 67.8 16 0.00035 37.9 6.8 65 41-119 266-333 (681)
160 PRK09852 cryptic 6-phospho-bet 67.7 19 0.0004 36.9 7.4 65 41-112 69-133 (474)
161 cd06546 GH18_CTS3_chitinase GH 66.8 37 0.00081 31.6 8.8 32 175-206 92-123 (256)
162 cd04734 OYE_like_3_FMN Old yel 66.7 78 0.0017 30.9 11.3 70 44-119 34-103 (343)
163 smart00518 AP2Ec AP endonuclea 65.8 81 0.0018 29.3 11.0 53 44-109 11-63 (273)
164 PF09445 Methyltransf_15: RNA 65.7 12 0.00027 32.2 4.8 68 40-114 55-122 (163)
165 PRK01060 endonuclease IV; Prov 65.6 15 0.00032 34.5 6.0 53 42-107 11-63 (281)
166 PF00724 Oxidored_FMN: NADH:fl 65.6 59 0.0013 31.7 10.3 71 44-120 37-107 (341)
167 cd02929 TMADH_HD_FMN Trimethyl 65.6 1.4E+02 0.0031 29.4 13.0 28 90-119 82-109 (370)
168 TIGR00539 hemN_rel putative ox 64.7 15 0.00032 36.2 5.9 63 47-118 101-164 (360)
169 PF01212 Beta_elim_lyase: Beta 64.6 6.7 0.00015 37.3 3.4 24 89-112 143-166 (290)
170 PRK15447 putative protease; Pr 64.4 21 0.00045 34.2 6.7 54 39-110 14-67 (301)
171 cd06547 GH85_ENGase Endo-beta- 64.2 13 0.00028 36.2 5.3 31 177-207 85-115 (339)
172 TIGR00542 hxl6Piso_put hexulos 64.0 15 0.00033 34.5 5.7 54 43-108 16-69 (279)
173 TIGR01212 radical SAM protein, 64.0 51 0.0011 31.6 9.3 26 89-114 161-186 (302)
174 PRK06256 biotin synthase; Vali 63.9 12 0.00026 36.3 5.1 58 48-115 154-211 (336)
175 cd07944 DRE_TIM_HOA_like 4-hyd 63.8 90 0.002 29.2 10.8 69 89-219 107-176 (266)
176 PRK05904 coproporphyrinogen II 62.7 16 0.00035 35.8 5.8 62 47-117 104-166 (353)
177 TIGR01233 lacG 6-phospho-beta- 61.3 39 0.00085 34.6 8.4 67 40-116 50-116 (467)
178 COG1441 MenC O-succinylbenzoat 60.9 11 0.00023 34.2 3.6 27 84-110 237-263 (321)
179 PRK13347 coproporphyrinogen II 60.9 20 0.00043 36.5 6.2 36 80-117 179-215 (453)
180 PRK08208 coproporphyrinogen II 60.4 18 0.00039 36.6 5.8 63 47-118 142-205 (430)
181 PRK05660 HemN family oxidoredu 60.3 20 0.00043 35.6 5.9 63 47-118 108-171 (378)
182 cd07943 DRE_TIM_HOA 4-hydroxy- 59.5 64 0.0014 30.1 9.0 38 181-219 141-179 (263)
183 PRK14581 hmsF outer membrane N 58.7 1.4E+02 0.003 32.1 12.0 128 46-203 337-466 (672)
184 COG0041 PurE Phosphoribosylcar 58.5 30 0.00066 29.3 5.7 51 40-110 13-63 (162)
185 PF10438 Cyc-maltodext_C: Cycl 58.3 15 0.00032 27.5 3.5 24 377-400 6-32 (78)
186 cd04735 OYE_like_4_FMN Old yel 57.7 79 0.0017 31.0 9.6 28 90-119 77-104 (353)
187 PRK12677 xylose isomerase; Pro 57.4 1.5E+02 0.0032 29.5 11.5 53 44-109 32-85 (384)
188 KOG2499 Beta-N-acetylhexosamin 57.3 56 0.0012 33.1 8.2 30 89-118 248-278 (542)
189 PRK13523 NADPH dehydrogenase N 56.6 1.7E+02 0.0037 28.5 11.6 71 43-119 37-107 (337)
190 COG2200 Rtn c-di-GMP phosphodi 56.5 27 0.0006 32.5 5.9 68 40-114 133-216 (256)
191 cd07937 DRE_TIM_PC_TC_5S Pyruv 56.4 1.8E+02 0.0038 27.4 11.8 39 181-220 149-188 (275)
192 cd02803 OYE_like_FMN_family Ol 56.3 1.1E+02 0.0023 29.5 10.2 64 51-120 41-104 (327)
193 PRK01278 argD acetylornithine 56.1 29 0.00064 34.3 6.4 59 41-117 164-222 (389)
194 PRK09249 coproporphyrinogen II 55.8 28 0.00061 35.4 6.3 63 47-118 152-215 (453)
195 PF07071 DUF1341: Protein of u 55.6 33 0.00072 30.5 5.7 45 44-107 136-180 (218)
196 COG0520 csdA Selenocysteine ly 55.6 11 0.00024 37.7 3.3 103 19-132 108-222 (405)
197 PRK05967 cystathionine beta-ly 55.3 21 0.00045 35.7 5.1 63 51-114 123-189 (395)
198 TIGR03471 HpnJ hopanoid biosyn 54.9 30 0.00064 35.4 6.4 28 89-116 321-348 (472)
199 PRK08446 coproporphyrinogen II 54.9 32 0.00068 33.7 6.3 62 47-117 99-161 (350)
200 PRK08195 4-hyroxy-2-oxovalerat 54.8 1.3E+02 0.0027 29.4 10.4 37 181-218 144-181 (337)
201 PRK13511 6-phospho-beta-galact 54.7 55 0.0012 33.5 8.2 65 40-112 51-115 (469)
202 PRK08599 coproporphyrinogen II 54.5 27 0.00059 34.5 5.9 33 86-118 131-164 (377)
203 TIGR00538 hemN oxygen-independ 54.4 27 0.00058 35.6 5.9 63 47-118 152-215 (455)
204 cd02877 GH18_hevamine_XipI_cla 54.3 1E+02 0.0022 29.2 9.3 63 47-110 14-78 (280)
205 PRK07379 coproporphyrinogen II 54.1 24 0.00051 35.3 5.3 63 47-118 116-179 (400)
206 PLN02389 biotin synthase 53.8 40 0.00086 33.5 6.7 35 79-115 203-237 (379)
207 cd02931 ER_like_FMN Enoate red 53.5 2.4E+02 0.0052 28.0 15.2 27 90-118 82-109 (382)
208 PLN02808 alpha-galactosidase 53.1 15 0.00034 36.3 3.7 59 44-109 50-115 (386)
209 COG2873 MET17 O-acetylhomoseri 52.9 22 0.00048 34.8 4.6 84 20-113 99-186 (426)
210 PLN03231 putative alpha-galact 52.3 2.4E+02 0.0052 27.7 12.4 56 171-227 153-216 (357)
211 PRK05799 coproporphyrinogen II 52.2 34 0.00073 33.8 6.1 63 47-118 100-163 (374)
212 PRK13125 trpA tryptophan synth 52.1 41 0.00089 31.0 6.3 26 89-114 114-139 (244)
213 cd00615 Orn_deC_like Ornithine 51.8 12 0.00026 35.6 2.7 27 86-112 165-191 (294)
214 TIGR03217 4OH_2_O_val_ald 4-hy 51.5 1.7E+02 0.0037 28.5 10.6 37 181-218 143-180 (333)
215 cd05014 SIS_Kpsf KpsF-like pro 51.5 42 0.0009 27.0 5.6 58 51-109 21-79 (128)
216 COG2179 Predicted hydrolase of 51.1 45 0.00098 28.8 5.7 48 49-109 20-67 (175)
217 PRK09997 hydroxypyruvate isome 50.6 43 0.00094 31.0 6.3 21 45-65 17-37 (258)
218 COG1874 LacA Beta-galactosidas 50.4 29 0.00063 37.0 5.4 61 43-113 30-90 (673)
219 COG1891 Uncharacterized protei 49.2 10 0.00022 32.8 1.5 22 89-110 165-186 (235)
220 cd06450 DOPA_deC_like DOPA dec 49.1 26 0.00057 33.7 4.7 31 85-115 159-189 (345)
221 COG0821 gcpE 1-hydroxy-2-methy 49.1 52 0.0011 31.7 6.3 89 23-117 20-134 (361)
222 cd00945 Aldolase_Class_I Class 49.0 56 0.0012 28.4 6.5 59 42-116 64-125 (201)
223 PF13407 Peripla_BP_4: Peripla 49.0 32 0.00069 31.4 5.1 48 39-109 38-85 (257)
224 cd04724 Tryptophan_synthase_al 48.8 44 0.00095 30.8 5.9 26 90-115 115-140 (242)
225 cd00958 DhnA Class I fructose- 48.8 31 0.00068 31.5 4.9 59 40-113 73-131 (235)
226 cd03412 CbiK_N Anaerobic cobal 48.3 33 0.00072 28.1 4.5 61 41-102 54-125 (127)
227 cd04747 OYE_like_5_FMN Old yel 48.3 2.8E+02 0.0061 27.3 12.0 28 90-119 77-104 (361)
228 cd04824 eu_ALAD_PBGS_cysteine_ 47.7 1.1E+02 0.0023 29.4 8.1 67 41-117 49-120 (320)
229 PRK05939 hypothetical protein; 47.7 25 0.00055 35.1 4.4 62 51-113 105-170 (397)
230 TIGR02006 IscS cysteine desulf 47.7 44 0.00095 33.2 6.1 71 42-113 102-181 (402)
231 PRK00366 ispG 4-hydroxy-3-meth 47.5 91 0.002 30.4 7.8 87 22-117 25-141 (360)
232 COG1640 MalQ 4-alpha-glucanotr 47.2 48 0.001 34.2 6.2 27 299-325 394-420 (520)
233 PRK05301 pyrroloquinoline quin 47.0 79 0.0017 31.2 7.8 28 87-114 137-164 (378)
234 PRK05692 hydroxymethylglutaryl 46.9 1.3E+02 0.0028 28.6 8.8 38 181-219 155-193 (287)
235 PRK06582 coproporphyrinogen II 46.6 44 0.00094 33.3 5.9 63 47-118 112-174 (390)
236 cd04823 ALAD_PBGS_aspartate_ri 46.5 1.1E+02 0.0025 29.2 8.1 67 41-117 52-122 (320)
237 cd03315 MLE_like Muconate lact 46.3 32 0.00069 32.1 4.6 70 40-110 140-237 (265)
238 COG1105 FruK Fructose-1-phosph 46.3 27 0.00059 33.5 4.1 22 90-111 145-166 (310)
239 cd00954 NAL N-Acetylneuraminic 46.2 65 0.0014 30.5 6.8 56 40-113 80-137 (288)
240 PRK06294 coproporphyrinogen II 46.2 49 0.0011 32.7 6.1 63 47-118 104-167 (370)
241 PLN02899 alpha-galactosidase 46.2 3.9E+02 0.0085 28.3 14.4 35 170-205 184-218 (633)
242 cd03320 OSBS o-Succinylbenzoat 45.9 50 0.0011 30.8 5.9 69 41-110 139-233 (263)
243 PRK14012 cysteine desulfurase; 45.8 68 0.0015 31.9 7.2 71 42-113 104-183 (404)
244 PRK09028 cystathionine beta-ly 45.7 29 0.00062 34.7 4.4 63 51-114 120-186 (394)
245 PF01791 DeoC: DeoC/LacD famil 45.4 18 0.00038 33.2 2.7 25 90-114 111-135 (236)
246 TIGR00612 ispG_gcpE 1-hydroxy- 45.3 63 0.0014 31.2 6.3 90 22-117 17-132 (346)
247 PRK00854 rocD ornithine--oxo-a 45.3 64 0.0014 32.0 6.9 29 90-118 207-235 (401)
248 PRK13209 L-xylulose 5-phosphat 45.0 47 0.001 31.1 5.6 54 44-109 22-75 (283)
249 PRK02227 hypothetical protein; 44.9 29 0.00062 31.9 3.8 51 47-109 135-185 (238)
250 PRK05093 argD bifunctional N-s 44.8 59 0.0013 32.3 6.6 30 89-118 203-232 (403)
251 PTZ00242 protein tyrosine phos 44.7 38 0.00083 29.3 4.5 63 47-109 31-103 (166)
252 PF09260 DUF1966: Domain of un 44.5 49 0.0011 25.5 4.6 22 376-397 2-26 (91)
253 COG1809 (2R)-phospho-3-sulfola 44.4 55 0.0012 29.6 5.4 46 46-110 93-138 (258)
254 cd03174 DRE_TIM_metallolyase D 44.4 1E+02 0.0022 28.5 7.7 38 181-219 146-184 (265)
255 PLN02651 cysteine desulfurase 44.2 56 0.0012 31.9 6.2 67 45-113 101-177 (364)
256 TIGR03586 PseI pseudaminic aci 44.1 70 0.0015 31.0 6.6 114 38-223 12-138 (327)
257 cd02933 OYE_like_FMN Old yello 43.7 1.6E+02 0.0034 28.7 9.1 28 90-119 76-103 (338)
258 TIGR03581 EF_0839 conserved hy 43.6 48 0.001 29.9 4.9 45 43-106 135-179 (236)
259 TIGR02109 PQQ_syn_pqqE coenzym 43.6 1E+02 0.0022 30.0 8.0 28 87-114 128-155 (358)
260 PRK11145 pflA pyruvate formate 43.3 63 0.0014 29.6 6.1 20 89-108 226-245 (246)
261 TIGR02631 xylA_Arthro xylose i 43.2 66 0.0014 32.0 6.5 65 33-109 22-86 (382)
262 PF03932 CutC: CutC family; I 43.1 80 0.0017 28.3 6.4 57 41-116 70-126 (201)
263 PRK15014 6-phospho-beta-glucos 43.1 54 0.0012 33.7 6.0 65 41-112 67-131 (477)
264 COG0134 TrpC Indole-3-glycerol 43.0 30 0.00065 32.1 3.7 22 90-111 142-163 (254)
265 KOG0259 Tyrosine aminotransfer 42.9 24 0.00051 34.7 3.1 32 89-120 217-248 (447)
266 TIGR03234 OH-pyruv-isom hydrox 42.7 65 0.0014 29.6 6.1 21 44-64 15-35 (254)
267 cd04733 OYE_like_2_FMN Old yel 42.6 1.6E+02 0.0035 28.6 9.0 28 90-119 81-108 (338)
268 cd08580 GDPD_Rv2277c_like Glyc 42.6 56 0.0012 30.6 5.6 16 94-109 219-235 (263)
269 cd05008 SIS_GlmS_GlmD_1 SIS (S 42.4 56 0.0012 26.2 5.0 58 50-109 19-78 (126)
270 cd04795 SIS SIS domain. SIS (S 42.4 28 0.0006 25.7 3.0 66 43-109 10-79 (87)
271 cd02930 DCR_FMN 2,4-dienoyl-Co 42.3 3.4E+02 0.0073 26.5 12.0 70 44-119 34-103 (353)
272 cd07938 DRE_TIM_HMGL 3-hydroxy 42.3 1.4E+02 0.0031 28.0 8.4 38 181-219 149-187 (274)
273 TIGR03551 F420_cofH 7,8-dideme 42.1 34 0.00073 33.4 4.2 28 89-116 177-204 (343)
274 TIGR03127 RuMP_HxlB 6-phospho 42.1 81 0.0018 27.3 6.3 60 45-109 44-104 (179)
275 TIGR01324 cysta_beta_ly_B cyst 41.8 36 0.00077 33.7 4.4 63 51-114 109-175 (377)
276 PF09081 DUF1921: Domain of un 41.7 1E+02 0.0022 20.4 5.4 35 388-422 14-51 (51)
277 PF15640 Tox-MPTase4: Metallop 41.1 29 0.00063 28.2 2.9 26 85-110 16-41 (132)
278 COG1168 MalY Bifunctional PLP- 40.9 30 0.00066 33.9 3.5 70 40-111 91-198 (388)
279 PLN02591 tryptophan synthase 40.8 81 0.0018 29.3 6.3 48 44-114 94-141 (250)
280 PRK09058 coproporphyrinogen II 40.8 92 0.002 31.7 7.3 63 47-118 164-227 (449)
281 PF07488 Glyco_hydro_67M: Glyc 40.7 1E+02 0.0022 29.4 6.8 60 41-113 55-114 (328)
282 PRK12928 lipoyl synthase; Prov 40.4 72 0.0016 30.4 6.0 64 41-113 217-280 (290)
283 PRK04302 triosephosphate isome 40.4 71 0.0015 28.9 5.8 43 49-110 78-120 (223)
284 cd00287 ribokinase_pfkB_like r 40.3 51 0.0011 28.5 4.8 53 48-114 42-94 (196)
285 cd06502 TA_like Low-specificit 40.2 31 0.00067 33.1 3.6 24 89-112 144-167 (338)
286 TIGR03246 arg_catab_astC succi 40.2 72 0.0016 31.7 6.3 59 41-117 168-226 (397)
287 TIGR03235 DNA_S_dndA cysteine 40.1 73 0.0016 30.9 6.3 68 44-112 100-176 (353)
288 PLN02849 beta-glucosidase 39.8 74 0.0016 32.9 6.4 64 41-112 77-140 (503)
289 PRK09057 coproporphyrinogen II 39.7 54 0.0012 32.5 5.3 62 47-117 105-166 (380)
290 cd01335 Radical_SAM Radical SA 39.6 48 0.001 28.4 4.5 31 86-116 120-150 (204)
291 PRK14017 galactonate dehydrata 39.5 1E+02 0.0022 30.5 7.2 68 41-109 189-284 (382)
292 PF00155 Aminotran_1_2: Aminot 39.4 55 0.0012 31.7 5.3 69 36-119 126-196 (363)
293 PRK12595 bifunctional 3-deoxy- 39.4 1.1E+02 0.0024 30.1 7.3 59 42-111 131-189 (360)
294 COG1103 Archaea-specific pyrid 39.4 29 0.00062 32.5 2.9 34 79-113 162-195 (382)
295 PRK07050 cystathionine beta-ly 39.0 38 0.00083 33.7 4.2 64 51-115 124-191 (394)
296 PRK10060 RNase II stability mo 39.0 63 0.0014 34.7 6.0 68 40-114 538-621 (663)
297 cd07940 DRE_TIM_IPMS 2-isoprop 38.9 1.9E+02 0.004 27.0 8.6 38 181-219 143-181 (268)
298 PRK03170 dihydrodipicolinate s 38.8 84 0.0018 29.8 6.3 27 40-66 80-106 (292)
299 PRK04073 rocD ornithine--oxo-a 38.8 1E+02 0.0022 30.6 7.2 29 90-118 206-234 (396)
300 PF13378 MR_MLE_C: Enolase C-t 38.7 14 0.00031 29.2 0.9 34 77-110 19-52 (111)
301 PLN02229 alpha-galactosidase 38.6 54 0.0012 33.0 5.0 52 51-109 93-146 (427)
302 TIGR03699 mena_SCO4550 menaqui 38.5 43 0.00094 32.5 4.4 31 85-115 175-205 (340)
303 smart00733 Mterf Mitochondrial 38.2 24 0.00052 19.9 1.6 17 42-58 15-31 (31)
304 TIGR02026 BchE magnesium-proto 38.2 76 0.0016 32.8 6.3 61 48-117 289-349 (497)
305 PRK08114 cystathionine beta-ly 38.2 36 0.00079 34.0 3.8 63 50-113 120-188 (395)
306 COG3345 GalA Alpha-galactosida 38.1 1.1E+02 0.0025 31.6 7.1 77 41-120 307-384 (687)
307 cd00950 DHDPS Dihydrodipicolin 37.9 86 0.0019 29.5 6.2 52 40-109 79-131 (284)
308 PRK13111 trpA tryptophan synth 37.8 92 0.002 29.1 6.2 25 90-114 128-152 (258)
309 PRK08247 cystathionine gamma-s 37.8 45 0.00097 32.8 4.4 29 85-113 147-175 (366)
310 PRK14457 ribosomal RNA large s 37.7 1.4E+02 0.003 29.3 7.6 54 42-108 270-323 (345)
311 TIGR02666 moaA molybdenum cofa 37.6 90 0.002 30.2 6.4 59 47-113 103-162 (334)
312 TIGR03470 HpnH hopanoid biosyn 37.4 2.6E+02 0.0056 26.9 9.5 27 87-113 145-171 (318)
313 PLN02509 cystathionine beta-ly 37.2 44 0.00096 34.2 4.3 32 81-113 225-256 (464)
314 PF02581 TMP-TENI: Thiamine mo 37.0 87 0.0019 27.2 5.7 26 49-74 108-133 (180)
315 PRK12858 tagatose 1,6-diphosph 37.0 58 0.0013 31.8 4.9 55 48-113 111-165 (340)
316 PRK14453 chloramphenicol/florf 37.0 1.3E+02 0.0027 29.6 7.2 58 42-109 263-324 (347)
317 TIGR00262 trpA tryptophan synt 36.9 96 0.0021 28.9 6.2 25 90-114 126-150 (256)
318 cd08560 GDPD_EcGlpQ_like_1 Gly 36.8 63 0.0014 31.7 5.2 17 93-109 280-296 (356)
319 PRK11059 regulatory protein Cs 36.8 46 0.00099 35.5 4.6 89 21-115 515-614 (640)
320 PRK09331 Sep-tRNA:Cys-tRNA syn 36.7 34 0.00074 33.9 3.4 33 80-113 165-197 (387)
321 PRK13397 3-deoxy-7-phosphohept 36.6 3.5E+02 0.0077 25.1 10.6 63 40-117 133-195 (250)
322 PF01276 OKR_DC_1: Orn/Lys/Arg 36.6 12 0.00025 37.6 0.0 28 85-112 178-205 (417)
323 PRK09989 hypothetical protein; 36.5 95 0.0021 28.7 6.2 22 44-65 16-37 (258)
324 PRK13384 delta-aminolevulinic 36.4 1.5E+02 0.0033 28.4 7.3 67 41-117 59-127 (322)
325 TIGR00510 lipA lipoate synthas 36.2 91 0.002 29.9 6.0 64 41-113 220-283 (302)
326 PF00232 Glyco_hydro_1: Glycos 36.1 28 0.0006 35.5 2.6 60 41-116 56-122 (455)
327 PRK09064 5-aminolevulinate syn 36.0 56 0.0012 32.5 4.8 30 85-114 189-218 (407)
328 cd06452 SepCysS Sep-tRNA:Cys-t 36.0 29 0.00064 33.8 2.8 30 85-114 150-179 (361)
329 cd00609 AAT_like Aspartate ami 35.9 37 0.00081 32.4 3.5 28 89-116 150-177 (350)
330 cd06454 KBL_like KBL_like; thi 35.9 32 0.00069 33.1 3.0 29 85-113 143-171 (349)
331 cd00614 CGS_like CGS_like: Cys 35.9 32 0.0007 33.8 3.0 29 85-113 136-164 (369)
332 PF01261 AP_endonuc_2: Xylose 35.8 1.1E+02 0.0024 26.6 6.3 58 42-113 70-134 (213)
333 TIGR00423 radical SAM domain p 35.8 58 0.0012 31.2 4.7 32 85-116 139-170 (309)
334 TIGR01140 L_thr_O3P_dcar L-thr 35.8 38 0.00083 32.6 3.5 28 89-116 143-170 (330)
335 PF04914 DltD_C: DltD C-termin 35.6 43 0.00093 27.7 3.2 58 42-112 35-96 (130)
336 TIGR01814 kynureninase kynuren 35.6 30 0.00064 34.5 2.8 35 77-112 175-209 (406)
337 PTZ00125 ornithine aminotransf 35.4 1.1E+02 0.0023 30.3 6.8 60 41-117 166-225 (400)
338 PLN03227 serine palmitoyltrans 35.3 80 0.0017 31.4 5.8 28 87-114 151-178 (392)
339 PRK03620 5-dehydro-4-deoxygluc 35.3 1.1E+02 0.0024 29.3 6.5 26 41-66 86-111 (303)
340 PRK07269 cystathionine gamma-s 35.3 35 0.00075 33.7 3.1 29 85-113 147-175 (364)
341 PRK05968 hypothetical protein; 35.3 50 0.0011 32.8 4.3 62 51-113 122-186 (389)
342 cd00384 ALAD_PBGS Porphobilino 35.1 1.5E+02 0.0033 28.3 7.1 67 41-117 49-117 (314)
343 cd03322 rpsA The starvation se 35.0 1E+02 0.0022 30.3 6.3 68 41-109 175-270 (361)
344 PRK15108 biotin synthase; Prov 35.0 1.1E+02 0.0025 29.8 6.7 28 88-115 168-195 (345)
345 cd05017 SIS_PGI_PMI_1 The memb 34.9 41 0.0009 27.0 3.0 55 51-109 20-75 (119)
346 PF01261 AP_endonuc_2: Xylose 34.8 19 0.00042 31.6 1.1 45 49-109 1-45 (213)
347 PRK08898 coproporphyrinogen II 34.6 71 0.0015 31.8 5.2 63 47-118 123-185 (394)
348 PRK09283 delta-aminolevulinic 34.6 2E+02 0.0043 27.7 7.8 86 22-117 28-125 (323)
349 COG2355 Zn-dependent dipeptida 34.6 97 0.0021 29.8 5.8 56 39-105 234-290 (313)
350 cd02876 GH18_SI-CLP Stabilin-1 34.5 47 0.001 32.0 3.8 29 175-203 88-116 (318)
351 KOG0053 Cystathionine beta-lya 34.4 51 0.0011 32.8 4.0 29 85-113 173-201 (409)
352 PRK08255 salicylyl-CoA 5-hydro 34.3 6.1E+02 0.013 27.8 12.8 29 90-120 474-503 (765)
353 PRK13398 3-deoxy-7-phosphohept 34.3 1.3E+02 0.0028 28.3 6.6 61 41-112 39-99 (266)
354 TIGR01821 5aminolev_synth 5-am 34.2 62 0.0013 32.1 4.8 30 85-114 188-217 (402)
355 TIGR00674 dapA dihydrodipicoli 34.1 95 0.0021 29.3 5.8 26 41-66 78-103 (285)
356 cd00953 KDG_aldolase KDG (2-ke 34.1 1.3E+02 0.0028 28.4 6.7 53 40-110 75-127 (279)
357 PLN02624 ornithine-delta-amino 33.9 1.1E+02 0.0024 31.4 6.6 62 41-117 210-271 (474)
358 cd06548 GH18_chitinase The GH1 33.9 52 0.0011 31.7 4.1 29 175-203 105-133 (322)
359 smart00729 Elp3 Elongator prot 33.8 1E+02 0.0023 26.6 5.8 29 88-116 133-162 (216)
360 PRK00278 trpC indole-3-glycero 33.8 50 0.0011 30.8 3.8 24 89-112 145-168 (260)
361 cd07939 DRE_TIM_NifV Streptomy 33.8 2.6E+02 0.0056 25.9 8.6 38 181-219 139-177 (259)
362 TIGR01162 purE phosphoribosyla 33.7 93 0.002 26.6 5.0 50 41-110 10-59 (156)
363 cd05005 SIS_PHI Hexulose-6-pho 33.6 1.5E+02 0.0032 25.6 6.6 61 44-109 46-107 (179)
364 PRK05937 8-amino-7-oxononanoat 33.4 65 0.0014 31.6 4.8 32 82-114 152-183 (370)
365 PRK12381 bifunctional succinyl 33.3 1.1E+02 0.0024 30.5 6.4 59 41-117 172-230 (406)
366 PF02679 ComA: (2R)-phospho-3- 33.3 1.4E+02 0.0031 27.6 6.5 79 90-229 53-134 (244)
367 cd01299 Met_dep_hydrolase_A Me 33.3 1.8E+02 0.0038 28.0 7.8 61 41-109 118-178 (342)
368 cd01494 AAT_I Aspartate aminot 33.2 29 0.00063 29.0 2.0 30 87-116 105-134 (170)
369 PRK13393 5-aminolevulinate syn 33.1 78 0.0017 31.5 5.3 31 82-113 186-216 (406)
370 TIGR03569 NeuB_NnaB N-acetylne 33.1 1.1E+02 0.0023 29.9 5.9 114 38-223 11-137 (329)
371 cd00408 DHDPS-like Dihydrodipi 33.0 1.1E+02 0.0025 28.5 6.2 27 40-66 76-102 (281)
372 cd06549 GH18_trifunctional GH1 33.0 50 0.0011 31.5 3.7 34 174-208 83-116 (298)
373 COG0436 Aspartate/tyrosine/aro 32.8 49 0.0011 33.0 3.7 31 89-119 181-211 (393)
374 PRK08960 hypothetical protein; 32.7 50 0.0011 32.5 3.9 28 89-116 183-210 (387)
375 cd06543 GH18_PF-ChiA-like PF-C 32.6 1.5E+02 0.0033 28.2 6.9 54 50-109 19-72 (294)
376 PRK07811 cystathionine gamma-s 32.6 38 0.00083 33.6 3.0 30 85-114 157-186 (388)
377 TIGR01928 menC_lowGC/arch o-su 32.4 48 0.001 32.0 3.6 63 47-110 190-280 (324)
378 PRK09989 hypothetical protein; 32.4 88 0.0019 28.9 5.2 62 43-113 85-146 (258)
379 cd07945 DRE_TIM_CMS Leptospira 32.3 3.9E+02 0.0084 25.2 9.6 38 181-219 147-185 (280)
380 PF00701 DHDPS: Dihydrodipicol 32.3 1.1E+02 0.0024 28.9 5.9 64 24-113 72-136 (289)
381 PRK14335 (dimethylallyl)adenos 32.3 1.1E+02 0.0024 31.2 6.3 31 89-119 291-323 (455)
382 PRK12581 oxaloacetate decarbox 32.3 2.6E+02 0.0056 28.6 8.7 41 179-220 161-202 (468)
383 COG3669 Alpha-L-fucosidase [Ca 32.3 5.2E+02 0.011 25.8 10.4 66 47-117 58-124 (430)
384 PLN02746 hydroxymethylglutaryl 32.2 2.5E+02 0.0053 27.6 8.3 39 180-219 196-235 (347)
385 cd00951 KDGDH 5-dehydro-4-deox 32.2 1.3E+02 0.0028 28.6 6.3 51 41-109 79-130 (289)
386 PRK14463 ribosomal RNA large s 32.2 2.6E+02 0.0056 27.4 8.6 54 43-109 266-319 (349)
387 cd05013 SIS_RpiR RpiR-like pro 32.0 53 0.0011 26.5 3.3 69 40-109 22-92 (139)
388 TIGR03402 FeS_nifS cysteine de 32.0 1.1E+02 0.0023 30.0 6.0 69 43-113 97-175 (379)
389 cd02879 GH18_plant_chitinase_c 31.9 53 0.0012 31.3 3.7 29 175-203 88-116 (299)
390 smart00636 Glyco_18 Glycosyl h 31.9 57 0.0012 31.4 4.0 29 175-203 87-115 (334)
391 TIGR03849 arch_ComA phosphosul 31.8 2.2E+02 0.0048 26.2 7.4 49 179-228 69-120 (237)
392 cd00308 enolase_like Enolase-s 31.7 61 0.0013 29.4 3.9 68 41-109 106-201 (229)
393 PRK07812 O-acetylhomoserine am 31.7 40 0.00087 34.1 3.0 62 51-113 128-194 (436)
394 PRK05926 hypothetical protein; 31.6 56 0.0012 32.3 3.9 35 81-116 198-232 (370)
395 TIGR02539 SepCysS Sep-tRNA:Cys 31.6 45 0.00097 32.8 3.2 33 81-114 154-186 (370)
396 PRK13361 molybdenum cofactor b 31.5 1.2E+02 0.0025 29.4 6.1 58 47-113 105-163 (329)
397 PRK04147 N-acetylneuraminate l 31.4 1.4E+02 0.0031 28.2 6.6 60 40-117 83-143 (293)
398 TIGR01329 cysta_beta_ly_E cyst 31.3 42 0.00091 33.2 3.0 61 52-113 106-170 (378)
399 TIGR00683 nanA N-acetylneurami 31.3 1.6E+02 0.0034 28.0 6.8 56 40-113 80-137 (290)
400 PF01565 FAD_binding_4: FAD bi 31.2 61 0.0013 26.6 3.6 21 89-109 9-29 (139)
401 cd00617 Tnase_like Tryptophana 30.8 55 0.0012 33.1 3.7 24 89-112 171-194 (431)
402 cd00311 TIM Triosephosphate is 30.8 1.2E+02 0.0026 28.0 5.7 46 49-110 77-123 (242)
403 PRK08445 hypothetical protein; 30.8 80 0.0017 30.9 4.8 36 80-116 172-207 (348)
404 TIGR01325 O_suc_HS_sulf O-succ 30.7 41 0.00088 33.3 2.8 63 51-114 113-179 (380)
405 PRK00164 moaA molybdenum cofac 30.7 1.3E+02 0.0029 28.9 6.4 58 47-113 109-167 (331)
406 PRK11194 ribosomal RNA large s 30.6 1.7E+02 0.0036 29.0 7.0 54 43-109 278-331 (372)
407 cd02803 OYE_like_FMN_family Ol 30.5 2E+02 0.0044 27.5 7.6 66 42-114 136-218 (327)
408 PF00266 Aminotran_5: Aminotra 30.5 26 0.00056 34.3 1.3 71 42-113 98-178 (371)
409 TIGR03700 mena_SCO4494 putativ 30.4 79 0.0017 31.0 4.7 35 80-115 178-212 (351)
410 PF00704 Glyco_hydro_18: Glyco 30.3 55 0.0012 31.5 3.6 32 175-206 95-126 (343)
411 PLN00175 aminotransferase fami 30.3 58 0.0013 32.6 3.9 29 89-117 205-233 (413)
412 PLN00145 tyrosine/nicotianamin 30.2 55 0.0012 33.0 3.7 29 89-117 208-236 (430)
413 COG1082 IolE Sugar phosphate i 30.1 1.2E+02 0.0026 28.0 5.8 22 43-64 15-36 (274)
414 PRK07568 aspartate aminotransf 30.0 55 0.0012 32.3 3.6 28 89-116 180-207 (397)
415 TIGR03249 KdgD 5-dehydro-4-deo 30.0 1.5E+02 0.0032 28.2 6.4 51 41-109 84-135 (296)
416 PRK09997 hydroxypyruvate isome 29.9 74 0.0016 29.4 4.3 64 42-115 84-147 (258)
417 PF00202 Aminotran_3: Aminotra 29.9 1.1E+02 0.0024 29.7 5.6 62 45-120 166-227 (339)
418 PRK13397 3-deoxy-7-phosphohept 29.9 2.3E+02 0.005 26.3 7.3 59 43-112 29-87 (250)
419 PRK15029 arginine decarboxylas 29.6 40 0.00086 36.7 2.6 28 84-111 321-348 (755)
420 PRK14340 (dimethylallyl)adenos 29.6 1.2E+02 0.0027 30.7 6.1 31 89-119 281-313 (445)
421 PRK13238 tnaA tryptophanase/L- 29.5 71 0.0015 32.6 4.3 23 89-111 196-218 (460)
422 PRK08776 cystathionine gamma-s 29.5 48 0.001 33.2 3.1 33 81-114 153-185 (405)
423 TIGR03620 F420_MSMEG_4141 prob 29.2 74 0.0016 30.1 4.1 28 39-66 233-260 (278)
424 PRK09856 fructoselysine 3-epim 29.2 1.1E+02 0.0023 28.5 5.3 60 42-111 89-149 (275)
425 PRK07324 transaminase; Validat 29.1 69 0.0015 31.5 4.1 28 89-116 171-198 (373)
426 PF15614 WHIM3: WSTF, HB1, Itc 29.1 35 0.00075 22.6 1.3 20 87-106 4-24 (46)
427 cd03409 Chelatase_Class_II Cla 29.1 51 0.0011 25.2 2.6 25 44-68 46-70 (101)
428 TIGR03392 FeS_syn_CsdA cystein 29.0 42 0.00091 33.2 2.6 62 51-113 126-196 (398)
429 cd05710 SIS_1 A subgroup of th 29.0 61 0.0013 26.0 3.1 32 77-109 48-79 (120)
430 COG0626 MetC Cystathionine bet 29.0 86 0.0019 31.3 4.7 72 38-113 112-188 (396)
431 cd02872 GH18_chitolectin_chito 28.9 62 0.0013 31.7 3.7 29 175-203 92-120 (362)
432 TIGR01496 DHPS dihydropteroate 28.9 3.4E+02 0.0074 25.2 8.5 65 33-110 11-81 (257)
433 TIGR01437 selA_rel uncharacter 28.8 42 0.0009 33.0 2.5 28 86-113 161-188 (363)
434 PTZ00376 aspartate aminotransf 28.7 66 0.0014 32.0 3.9 30 89-118 194-223 (404)
435 COG0329 DapA Dihydrodipicolina 28.7 2.4E+02 0.0051 27.0 7.5 63 41-120 84-146 (299)
436 PRK07671 cystathionine beta-ly 28.7 53 0.0011 32.5 3.2 32 82-114 143-174 (377)
437 TIGR01265 tyr_nico_aTase tyros 28.6 65 0.0014 32.0 3.9 28 90-117 188-215 (403)
438 TIGR02127 pyrF_sub2 orotidine 28.6 63 0.0014 30.3 3.5 30 85-114 65-96 (261)
439 COG1104 NifS Cysteine sulfinat 28.3 1.4E+02 0.0029 29.7 5.8 69 43-112 102-179 (386)
440 PRK06108 aspartate aminotransf 28.3 58 0.0012 31.9 3.4 29 89-117 176-204 (382)
441 PRK05958 8-amino-7-oxononanoat 28.3 48 0.001 32.4 2.8 29 85-113 179-207 (385)
442 cd03413 CbiK_C Anaerobic cobal 28.2 45 0.00097 26.3 2.1 53 45-108 44-96 (103)
443 PRK13561 putative diguanylate 28.1 1.4E+02 0.0031 31.7 6.6 68 40-114 531-614 (651)
444 TIGR00587 nfo apurinic endonuc 28.0 1.4E+02 0.003 28.0 5.7 50 44-106 12-61 (274)
445 PRK13237 tyrosine phenol-lyase 28.0 64 0.0014 32.8 3.6 23 90-112 197-219 (460)
446 PLN02692 alpha-galactosidase 28.0 71 0.0015 32.0 3.8 52 51-109 86-139 (412)
447 PRK07777 aminotransferase; Val 27.9 65 0.0014 31.7 3.7 29 89-117 177-205 (387)
448 PRK13957 indole-3-glycerol-pho 27.9 70 0.0015 29.6 3.6 23 89-111 136-158 (247)
449 PF00682 HMGL-like: HMGL-like 27.8 3.3E+02 0.0071 24.6 8.2 37 181-218 137-174 (237)
450 PRK09589 celA 6-phospho-beta-g 27.8 1.8E+02 0.004 29.8 6.9 68 40-116 64-131 (476)
451 TIGR01822 2am3keto_CoA 2-amino 27.8 52 0.0011 32.4 3.0 29 85-113 181-209 (393)
452 PRK13392 5-aminolevulinate syn 27.7 1E+02 0.0022 30.7 5.1 30 85-114 189-218 (410)
453 TIGR03470 HpnH hopanoid biosyn 27.7 1.5E+02 0.0032 28.5 6.0 52 41-102 176-227 (318)
454 PRK14462 ribosomal RNA large s 27.7 2.2E+02 0.0048 28.0 7.2 56 41-109 277-332 (356)
455 PRK00125 pyrF orotidine 5'-pho 27.6 62 0.0013 30.6 3.2 25 90-114 72-96 (278)
456 TIGR01976 am_tr_V_VC1184 cyste 27.6 51 0.0011 32.5 2.9 60 52-112 125-194 (397)
457 cd07491 Peptidases_S8_7 Peptid 27.6 3.4E+02 0.0074 24.9 8.2 71 25-109 69-141 (247)
458 PLN02460 indole-3-glycerol-pho 27.5 73 0.0016 31.0 3.7 22 90-111 216-237 (338)
459 PLN02368 alanine transaminase 27.5 69 0.0015 32.1 3.8 29 89-117 228-256 (407)
460 PRK08175 aminotransferase; Val 27.5 63 0.0014 32.0 3.6 28 89-116 182-209 (395)
461 PF01408 GFO_IDH_MocA: Oxidore 27.5 77 0.0017 25.0 3.5 55 52-110 58-119 (120)
462 cd03329 MR_like_4 Mandelate ra 27.4 2.1E+02 0.0044 28.2 7.1 68 41-109 201-297 (368)
463 PLN02656 tyrosine transaminase 27.4 63 0.0014 32.2 3.5 28 90-117 188-215 (409)
464 TIGR02494 PFLE_PFLC glycyl-rad 27.3 1.9E+02 0.004 27.3 6.6 16 89-104 280-295 (295)
465 PRK06348 aspartate aminotransf 27.3 67 0.0014 31.7 3.7 29 89-117 180-208 (384)
466 PLN02417 dihydrodipicolinate s 27.3 1.8E+02 0.0039 27.4 6.4 50 41-109 81-130 (280)
467 PRK08056 threonine-phosphate d 27.3 75 0.0016 30.9 4.0 28 89-116 160-187 (356)
468 PRK07582 cystathionine gamma-l 27.2 60 0.0013 32.0 3.3 62 51-113 109-171 (366)
469 KOG4730 D-arabinono-1, 4-lacto 27.2 65 0.0014 32.4 3.4 27 89-116 58-84 (518)
470 PRK08133 O-succinylhomoserine 27.2 55 0.0012 32.5 3.0 62 51-113 120-185 (390)
471 PRK13361 molybdenum cofactor b 27.2 1.3E+02 0.0028 29.1 5.5 53 39-109 136-188 (329)
472 PRK06939 2-amino-3-ketobutyrat 27.0 53 0.0012 32.3 2.9 30 85-114 185-214 (397)
473 TIGR00858 bioF 8-amino-7-oxono 27.0 46 0.001 32.1 2.4 28 86-113 158-185 (360)
474 PLN02721 threonine aldolase 27.0 68 0.0015 30.9 3.6 24 90-113 157-180 (353)
475 PRK04366 glycine dehydrogenase 26.9 72 0.0016 32.7 3.9 28 85-112 218-246 (481)
476 PLN02187 rooty/superroot1 26.8 70 0.0015 32.6 3.8 29 89-117 222-250 (462)
477 TIGR03799 NOD_PanD_pyr putativ 26.8 97 0.0021 32.2 4.8 30 85-114 276-305 (522)
478 TIGR03539 DapC_actino succinyl 26.8 65 0.0014 31.4 3.5 29 89-117 160-188 (357)
479 PRK08134 O-acetylhomoserine am 26.6 55 0.0012 33.1 2.9 62 51-113 123-188 (433)
480 COG1902 NemA NADH:flavin oxido 26.6 6.3E+02 0.014 24.9 14.0 28 90-119 82-109 (363)
481 PTZ00333 triosephosphate isome 26.5 1.6E+02 0.0034 27.5 5.7 45 50-110 83-128 (255)
482 PF00218 IGPS: Indole-3-glycer 26.5 75 0.0016 29.6 3.6 22 90-111 144-165 (254)
483 PRK10605 N-ethylmaleimide redu 26.5 76 0.0017 31.2 3.8 29 90-120 78-106 (362)
484 PRK05764 aspartate aminotransf 26.5 70 0.0015 31.5 3.7 27 89-115 182-208 (393)
485 PF04914 DltD_C: DltD C-termin 26.5 88 0.0019 25.9 3.6 24 90-113 35-58 (130)
486 PRK09593 arb 6-phospho-beta-gl 26.4 1.6E+02 0.0035 30.2 6.3 66 40-112 70-135 (478)
487 cd03321 mandelate_racemase Man 26.4 1.5E+02 0.0032 29.0 5.9 67 41-108 198-292 (355)
488 TIGR01927 menC_gamma/gm+ o-suc 26.4 65 0.0014 30.9 3.2 69 41-110 166-263 (307)
489 PF04476 DUF556: Protein of un 26.4 83 0.0018 28.8 3.7 50 49-110 137-186 (235)
490 PRK15492 triosephosphate isome 26.3 1.7E+02 0.0037 27.3 5.9 45 50-110 88-133 (260)
491 PRK07810 O-succinylhomoserine 26.1 57 0.0012 32.6 2.9 63 51-114 129-195 (403)
492 PRK09082 methionine aminotrans 26.1 62 0.0013 31.9 3.2 28 89-116 181-208 (386)
493 TIGR01264 tyr_amTase_E tyrosin 26.1 67 0.0015 31.8 3.4 29 89-117 186-214 (401)
494 PF13707 RloB: RloB-like prote 26.1 1.6E+02 0.0034 25.5 5.4 54 40-110 38-96 (183)
495 TIGR00474 selA seryl-tRNA(sec) 26.0 47 0.001 33.8 2.3 23 89-111 230-252 (454)
496 PRK08064 cystathionine beta-ly 26.0 64 0.0014 32.1 3.2 62 51-113 112-177 (390)
497 TIGR02351 thiH thiazole biosyn 26.0 1.1E+02 0.0023 30.3 4.7 40 74-114 183-225 (366)
498 cd00331 IGPS Indole-3-glycerol 25.9 1.8E+02 0.004 25.9 6.0 22 90-111 107-128 (217)
499 PRK05367 glycine dehydrogenase 25.7 50 0.0011 37.1 2.6 61 50-113 184-244 (954)
500 PRK06176 cystathionine gamma-s 25.7 61 0.0013 32.1 3.0 63 51-114 108-174 (380)
No 1
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=1.3e-81 Score=620.65 Aligned_cols=415 Identities=64% Similarity=1.204 Sum_probs=368.2
Q ss_pred hhHhhhhccCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC
Q 014447 9 FLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG 88 (424)
Q Consensus 9 ~~~~~~~~~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G 88 (424)
+++.+++..|..+.++||+|.|+|+++...||++++|+++|+|||+||||+|||+|++++.++|||++.||+++|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~v~~Q~F~W~~~~~~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG 89 (428)
T PLN00196 10 LLLVLLGLSSNLAAGQVLFQGFNWESWKQNGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG 89 (428)
T ss_pred HHHHHhccCcccCCCCEEEEeeccCCCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC
Confidence 34444455677778899999999999888899999999999999999999999999999999999999999999933999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
|++||++||++||++|||||+|+|+||++.++....+.|..|+++.+.++.+|+.+..+.+...|.++.+++..+.++.+
T Consensus 90 t~~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (428)
T PLN00196 90 NEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAA 169 (428)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCC
Confidence 99999999999999999999999999999888765666877887777777888876666655567666777788889999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCch
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHR 248 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~ 248 (424)
+||||++||+|+++|+++++||++++||||||+|+|++++.+|++.++++.+|.|+|||+|.+.+|.+.++..|.++.++
T Consensus 170 lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~f~~~~v~~~~p~f~VGE~W~~~~~~~~~~~~~~~~~~r 249 (428)
T PLN00196 170 APDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAEVAKVYIDGTEPSFAVAEIWTSMAYGGDGKPEYDQNAHR 249 (428)
T ss_pred CCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHHHHHHHHHccCCcEEEEEEeccccccccCCccccchhhH
Confidence 99999999999999999999998889999999999999999999999998899999999998877666677888877778
Q ss_pred hHHHHHHHhcCCc---eeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhH
Q 014447 249 GALKDWVQAAGGA---VAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKV 325 (424)
Q Consensus 249 ~~~~~~~~~~~~~---~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~ 325 (424)
+.+..|++..++. .+.|||+....+..++.++.+++.+.....+++....|..+|+|++|||++|..+....+.++.
T Consensus 250 ~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~~~~~~ 329 (428)
T PLN00196 250 QELVNWVDRVGGAASPATVFDFTTKGILNVAVEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPFPSDKV 329 (428)
T ss_pred HHHHHHHHhcCCccCcceeecccchHHHHHHhcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCCccchH
Confidence 8999999976543 4589999987666677666777777655555666677889999999999999988877677788
Q ss_pred HHHHHHHHcCCCeeEEecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcC
Q 014447 326 MLGYAYILTHPGTPCIFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLI 405 (424)
Q Consensus 326 ~~a~a~~l~~pG~P~iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~ 405 (424)
++|+|++||+||+|+||||+.++|++.+.|++|+++||++++++.|.++.+..++++++++|+++++|+||...+.+.+.
T Consensus 330 ~lAyA~iLT~pG~P~IyYg~~~~~~~~~~i~~Li~~Rk~~~~~~~g~~~~~~a~~d~yv~~~~~~~~~~i~~~~~~~~~~ 409 (428)
T PLN00196 330 MQGYAYILTHPGNPCIFYDHFFDWGLKEEIAALVSIRNRNGITPTSELRIMEADADLYLAEIDGKVIVKIGSRYDVSHLI 409 (428)
T ss_pred HHHHHHHHcCCCcceEeeCCCcCccHHHHHHHHHHHHHhCCCcCCccEEEEEecCCEEEEEECCEEEEEECCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCcEEEEec
Q 014447 406 PSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~ 423 (424)
|.+|+++++|.+|+||++
T Consensus 410 ~~~~~~~~~g~~~~~w~~ 427 (428)
T PLN00196 410 PEGFQVVAHGNGYAVWEK 427 (428)
T ss_pred cccceEEEecCCeEEEec
Confidence 999999999999999975
No 2
>PLN02361 alpha-amylase
Probab=100.00 E-value=1.8e-74 Score=562.95 Aligned_cols=387 Identities=49% Similarity=0.981 Sum_probs=336.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
+++||+|.|+|++.. ...+++|+++|+||++||||+|||+|++++.++|||++.||+++| ++|||++||++||++||
T Consensus 10 ~~~v~lQ~F~W~~~~--~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~-~~~Gt~~el~~li~~~h 86 (401)
T PLN02361 10 GREILLQAFNWESHK--HDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLN-SAYGSEHLLKSLLRKMK 86 (401)
T ss_pred CCcEEEEEEeccCCc--cHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccC-cccCCHHHHHHHHHHHH
Confidence 578999999999874 358999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 014447 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~ 181 (424)
++||+||+|+|+||++...+...+.|..|.+. +.+|.....+.+. .+.++...+..+.++||||++||+||+
T Consensus 87 ~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~----~~~wd~~~~~~~~----~g~~~~~~~~~~~~lpDLd~~np~Vr~ 158 (401)
T PLN02361 87 QYNVRAMADIVINHRVGTTQGHGGMYNRYDGI----PLPWDEHAVTSCT----GGLGNRSTGDNFNGVPNIDHTQHFVRK 158 (401)
T ss_pred HcCCEEEEEEccccccCCCCCCCCCcccCCCC----cCCCCcccccccc----CCCCCccCCCCCccCCccCCCCHHHHH
Confidence 99999999999999976555444555444321 1245433222111 122344556678899999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCC-CCCCCCCCCCchhHHHHHHHhcCC
Q 014447 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP-DGKPDANQDGHRGALKDWVQAAGG 260 (424)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (424)
+++++++||++++||||||+|+|++++.+||++++++.+|.|+|||+|.+..+.. ++.++|+++.+++.+..|+...++
T Consensus 159 ~l~~~~~wl~~~~GiDGfRlDavk~~~~~f~~~~~~~~~p~f~VGE~w~~~~~~~~d~~~~y~~~~~~~~l~~~~~~~~~ 238 (401)
T PLN02361 159 DIIGWLIWLRNDVGFQDFRFDFAKGYSAKFVKEYIEAAKPLFSVGEYWDSCNYSGPDYRLDYNQDSHRQRIVNWIDGTGG 238 (401)
T ss_pred HHHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHhhCCeEEEEEEecCCCcCCcccccchhhhhHHHHHHHHHHhcCC
Confidence 9999999888889999999999999999999999998889999999998755432 556889888889999999998878
Q ss_pred ceeeecccchHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeE
Q 014447 261 AVAAFDFTTKGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (424)
Q Consensus 261 ~~~~~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~ 340 (424)
..++|||+++..+.+++.++.+++.+...+.+.+.+..|..+|+|++|||++|.++....+.++.++|+|++||+||+|+
T Consensus 239 ~~~~fDF~l~~~l~~a~~~~~~~l~~~~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~~~~~~~~~AyA~iLT~pG~P~ 318 (401)
T PLN02361 239 LSAAFDFTTKGILQEAVKGQWWRLRDAQGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWPFPSDHIMEGYAYILTHPGIPT 318 (401)
T ss_pred cceeecHHHHHHHHHHHhhhHHHHhhhhcCCcchhhcChhhceEecccCcCcchhhccCCchHHHHHHHHHHHCCCCcCe
Confidence 89999999999999999777888888777667777778899999999999999988877777889999999999999999
Q ss_pred EecCCCCCcc--hHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCC--CcEEEEeCC
Q 014447 341 IFYDHFFDWG--LKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPS--DFKVAADGT 416 (424)
Q Consensus 341 iyyG~~~~w~--l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~--~~~~~~~~~ 416 (424)
||||+.++|+ +.+.|++|+.+||++++++.|.++++..++++++...+++++|-++. +.+.|. +|+++++|.
T Consensus 319 Vyyg~~~~~~~~~~~~I~~Li~lRk~~~~~~~s~~~i~~a~~~~y~a~i~~~~~~k~g~----~~~~p~~~~~~~~~~g~ 394 (401)
T PLN02361 319 VFYDHFYDWGGSIHDQIVKLIDIRKRQDIHSRSSIRILEAQSNLYSAIIDEKLCMKIGD----GSWCPSGREWTLATSGH 394 (401)
T ss_pred EeeccccCCChHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCeEEEEECCeEEEEecC----CCCCCCCCCceEEEecC
Confidence 9999999995 99999999999999999999999999999999999999999999998 455554 599999999
Q ss_pred cEEEEec
Q 014447 417 DYAVWEK 423 (424)
Q Consensus 417 ~~~~~~~ 423 (424)
+|+||++
T Consensus 395 ~~~~w~~ 401 (401)
T PLN02361 395 RYAVWHK 401 (401)
T ss_pred ceEEeeC
Confidence 9999985
No 3
>PLN02784 alpha-amylase
Probab=100.00 E-value=9.9e-69 Score=547.81 Aligned_cols=392 Identities=50% Similarity=0.953 Sum_probs=341.9
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR 101 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH 101 (424)
+.+||+|.|+|++..+ +..+++|+++|+||++||||+|||+|++++..++||++.|||++| ++|||.+||++||++||
T Consensus 501 ~~eVmlQgF~Wds~~d-g~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yGT~~ELk~LI~a~H 578 (894)
T PLN02784 501 GFEILCQGFNWESHKS-GRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYGTIDELKDLVKSFH 578 (894)
T ss_pred CceEEEEeEEcCcCCC-CchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcCCHHHHHHHHHHHH
Confidence 5589999999999987 456999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q 014447 102 QKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQK 181 (424)
Q Consensus 102 ~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~ 181 (424)
++||+||+|+|+||++..+....+.|.+|.+ ..+|.+...+.+...|. +.++...+..+..+||||++||+||+
T Consensus 579 ~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g-----~~dW~d~~i~~ddp~F~-GrG~~~sgddf~~lPDLDh~npeVR~ 652 (894)
T PLN02784 579 EVGIKVLGDAVLNHRCAHFQNQNGVWNIFGG-----RLNWDDRAVVADDPHFQ-GRGNKSSGDNFHAAPNIDHSQDFVRK 652 (894)
T ss_pred HCCCEEEEEECcccccccccCCCCcccccCC-----eecCCCCcccCCCcccC-CcCCcCcccccCcCCcCCCCCHHHHH
Confidence 9999999999999998765444445555543 34566554444444454 45566667788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCc
Q 014447 182 ELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGA 261 (424)
Q Consensus 182 ~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (424)
+++++++||++++||||||+|+|++++..|+++++++.+|.|+|||.|.+.+|. .+.++|+++.+++.+..|++..++.
T Consensus 653 eL~~WlkWL~~e~G~DGfRLDaVKgf~~~Fvkeyv~a~kp~F~VGEyWd~~~~~-~g~~~Ynqd~~rq~l~dwi~~tgg~ 731 (894)
T PLN02784 653 DLKEWLCWMRKEVGYDGWRLDFVRGFWGGYVKDYMEASEPYFAVGEYWDSLSYT-YGEMDYNQDAHRQRIVDWINATNGT 731 (894)
T ss_pred HHHHHHHHHHhccCCCEEEEeccCCCCHHHHHHHHhccCCcEEEEEeccccccc-cCccccCchhHHHHHHHHHHhCCCc
Confidence 999999999988999999999999999999999999999999999999876554 4688999999999999999998888
Q ss_pred eeeecccchHHHHHHhc-chhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeE
Q 014447 262 VAAFDFTTKGILQAAVQ-GELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPC 340 (424)
Q Consensus 262 ~~~~df~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~ 340 (424)
.++|||+++..+..++. ++.+++.+..+..+++.++.|..+|+|++|||+++.++...++..+..+|||++||.||+||
T Consensus 732 ~saFDfplk~~L~~A~~~~e~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q~~w~~p~~k~~~AYAyILthpG~Pc 811 (894)
T PLN02784 732 AGAFDVTTKGILHSALERCEYWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPA 811 (894)
T ss_pred eeeechhHHHHHHHHHhccchhhhhhccCCCCCeeccccCceEEEecCCCCCCCcccCCCCccchhhHHHHHHcCCCcce
Confidence 99999999999999985 57889988887778889999999999999999999877666666788889999999999999
Q ss_pred EecCCCCCcchHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEE
Q 014447 341 IFYDHFFDWGLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAV 420 (424)
Q Consensus 341 iyyG~~~~w~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~ 420 (424)
||||+.+ |.+.+.|++|+.+|+..-.-.+...+++..+.++|+...+++++|.|+...-.+.-.+.+|+++++|.+|+|
T Consensus 812 VFy~h~y-~~~~~~I~~Li~iRk~~gI~~~S~v~i~~a~~~~Y~a~i~~k~~~kiG~~~~~p~~~~~~~~~~~sG~~yav 890 (894)
T PLN02784 812 VFYDHIF-SHYHPEIASLISLRNRQKIHCRSEVKITKAERDVYAAIIDEKVAMKIGPGHYEPPNGPQNWSVALEGQDYKV 890 (894)
T ss_pred EEehhhh-hhhHHHHHHHHHHHHHcCCCCCCceeEEEecCCcEEEEeCCeeEEEECCcccCCCCCCCceEEEEecCCeEE
Confidence 9999988 567888999999999988888888999999999999999999999999842221112236999999999999
Q ss_pred Eec
Q 014447 421 WEK 423 (424)
Q Consensus 421 ~~~ 423 (424)
|++
T Consensus 891 W~k 893 (894)
T PLN02784 891 WET 893 (894)
T ss_pred EeC
Confidence 986
No 4
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=4.6e-65 Score=526.79 Aligned_cols=353 Identities=20% Similarity=0.336 Sum_probs=258.4
Q ss_pred hccCCCCCCceEEEeecCCCCC---------------------------------------CCCCcHHHHHhhhhHHHHc
Q 014447 15 AIFLPFTSPALLFQGFNWESSN---------------------------------------KAGGWYNSLKNSIPDLSNA 55 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~ds~~---------------------------------------~~~G~~~gi~~~L~ylk~l 55 (424)
...|.|++++|+||+|+ |.+. -.||||+||++||||||+|
T Consensus 113 ~~~P~W~~~~v~YqIfp-DRF~ng~~~n~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~f~GGDl~GI~~kLdYL~~L 191 (598)
T PRK10785 113 DQGPQWVADQVFYQIFP-DRFARSLPREAVQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKL 191 (598)
T ss_pred CCCCchhhcCEEEEech-hhhcCCCcccCccCCceeeccCCCcccccCcCCCcccccccccccCcCHHHHHHHHHHHHHc
Confidence 35699999999999994 2211 0279999999999999999
Q ss_pred CCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceee-cCCCC
Q 014447 56 GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCI-FEGGT 134 (424)
Q Consensus 56 Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~-~~~~~ 134 (424)
|||+|||+||++++++|||++.||++|| |+|||++||++||++||++|||||||+|+||||.+|+ |+. ...+.
T Consensus 192 Gv~~I~L~Pif~s~s~hgYd~~Dy~~iD-p~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~-----~f~~~~~~~ 265 (598)
T PRK10785 192 GVTALYLNPIFTAPSVHKYDTEDYRHVD-PQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP-----WFDRHNRGT 265 (598)
T ss_pred CCCEEEeCCcccCCCCCCcCcccccccC-cccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH-----HHHHhhccc
Confidence 9999999999999999999999999999 9999999999999999999999999999999999885 211 00000
Q ss_pred -------CCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH----HHHHHHHh-cCCCeEEec
Q 014447 135 -------SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSD----WMNWLKTE-IGFDGWRFD 202 (424)
Q Consensus 135 -------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~----~~~~w~~~-~gvDGfR~D 202 (424)
.....+|+.. . ..+.+..+.....+|+||++||+|+++|++ ++++|+++ +||||||+|
T Consensus 266 ~ga~~~~~spy~dwf~~---~-------~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlD 335 (598)
T PRK10785 266 GGACHHPDSPWRDWYSF---S-------DDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLD 335 (598)
T ss_pred cccccCCCCCcceeeEE---C-------CCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEe
Confidence 1111233211 1 112333445568899999999999999995 79999986 899999999
Q ss_pred ccCCCC--------HHHHHHH---HHhcCC-CeEEeeecCCCC-CCC----CCCCCCCCCCchhHHHHHHHhcCCceeee
Q 014447 203 FVKGYA--------PSITKVY---MENTSP-DFAVGEKWDSLS-YGP----DGKPDANQDGHRGALKDWVQAAGGAVAAF 265 (424)
Q Consensus 203 ~a~~~~--------~~~~~~~---~~~~~p-~~~v~E~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (424)
+|++++ .+||+++ +++.+| .+++||+|.+.. +.+ ++.++|. .+...+..++.... +
T Consensus 336 va~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d~~mny~--~f~~~~~~~~~~~~-----~ 408 (598)
T PRK10785 336 VVHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVEDAAMNYR--GFAFPLRAFLANTD-----I 408 (598)
T ss_pred cHhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCccccccccch--hhhhHHHHHhhccc-----c
Confidence 999884 5799988 555677 789999997532 211 2222221 12223333332110 0
Q ss_pred cccc-hHHHHHHhcchhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecC
Q 014447 266 DFTT-KGILQAAVQGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYD 344 (424)
Q Consensus 266 df~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG 344 (424)
.+.. ..... .+...+...... .+.. .....++|++|||++|+.+.++.+.+++++|++++||+||+|+||||
T Consensus 409 ~~~~~~~~~~-~~~~~l~~~~~~---~~~~---~~~~~~n~l~nHD~~R~~~~~~~~~~~~kla~~ll~t~pGiP~IYYG 481 (598)
T PRK10785 409 AYHPQQIDAQ-TCAAWMDEYRAG---LPHQ---QQLRQFNQLDSHDTARFKTLLGGDKARMPLALVWLFTWPGVPCIYYG 481 (598)
T ss_pred ccCccCCCHH-HHHHHHHHHHHh---CCHH---HHHHhhhccCCCccchhhhhhCCCHHHHHHHHHHHHhCCCCcEEEee
Confidence 0000 00000 000000011110 0100 00124689999999999888765677899999999999999999999
Q ss_pred CC--------------CCc-------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECCC
Q 014447 345 HF--------------FDW-------GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGPK 398 (424)
Q Consensus 345 ~~--------------~~w-------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~~ 398 (424)
|| |+| +++++||+|++|||++|+|+.|.+..+..++++++|.| +++++|++|++
T Consensus 482 dE~G~~g~~dp~~R~~m~W~~~~~~~~l~~~~r~Li~lRk~~~aL~~G~~~~l~~~~~v~af~R~~~~~~vlVviN~s 559 (598)
T PRK10785 482 DEVGLDGGNDPFCRKPFPWDEAKQDGALLALYQRMIALRKKSQALRRGGCQVLYAEGNVVVFARVLQQQRVLVAINRG 559 (598)
T ss_pred eeccccCCCCCCccCCcCCCcccCchHHHHHHHHHHHHHhhCcccccCcEEEEEeCCCEEEEEEECCCCEEEEEEECC
Confidence 86 456 48999999999999999999999999988899999999 67999999986
No 5
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=2.5e-62 Score=496.69 Aligned_cols=355 Identities=28% Similarity=0.466 Sum_probs=262.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCccccc---------CCCCCCCCC
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLY---------DLDASKYGS 89 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~---------~id~~~~Gt 89 (424)
+..||+|.|.|++.. ++.++++|++|||||++||||+|||+||+++++ +|||++.||+ .|| |+|||
T Consensus 2 ~~~~~~q~f~w~~~~-~~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~fGt 79 (479)
T PRK09441 2 RNGTMMQYFEWYLPN-DGKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKYGT 79 (479)
T ss_pred CCceEEEEEEeccCC-CccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCcCC
Confidence 568999999999884 355678999999999999999999999999874 6999999999 799 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC---------C------------cceeecCCC-C--CCCCCCCCCcc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDG---------R------------GIYCIFEGG-T--SDDRLDWGPSF 145 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~---------~------------~~~~~~~~~-~--~~~~~~w~~~~ 145 (424)
++|||+||++||++|||||+|+|+||++.++..+ + ..|.+|... . +.....|.-+.
T Consensus 80 ~~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (479)
T PRK09441 80 KEELLNAIDALHENGIKVYADVVLNHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYH 159 (479)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcC
Confidence 9999999999999999999999999999643200 0 001111100 0 00000010000
Q ss_pred cccCC-----------------CccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 146 ICRGD-----------------KEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 146 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
.+... ..|.+........+.+..+||||++||+|+++|++++++|++++||||||+|+|++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~ 239 (479)
T PRK09441 160 FSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHID 239 (479)
T ss_pred CCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC
Confidence 00000 0011000011122344679999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhc---C-C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhh
Q 014447 209 PSITKVYMENT---S-P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELW 282 (424)
Q Consensus 209 ~~~~~~~~~~~---~-p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~ 282 (424)
.+||+++.++. . | .+++||+|.+. .+.+..|+...+...++|||++...+..++.+ ...
T Consensus 240 ~~f~~~~~~~~~~~~~~~~~~vGE~~~~~---------------~~~~~~y~~~~~~~~~~~Df~~~~~l~~~~~~~~~~ 304 (479)
T PRK09441 240 AWFIKEWIEHVREVAGKDLFIVGEYWSHD---------------VDKLQDYLEQVEGKTDLFDVPLHYNFHEASKQGRDY 304 (479)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeecCCC---------------hHHHHHHHHhcCCCceEecHHHHHHHHHHHhcCCcc
Confidence 99999996552 2 4 78999999642 35667788755456678999998888887743 222
Q ss_pred hhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCc-hhHHHHHHHHHcCC-CeeEEecCCCCCcc-------hHH
Q 014447 283 RLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPS-DKVMLGYAYILTHP-GTPCIFYDHFFDWG-------LKE 353 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~-~~~~~a~a~~l~~p-G~P~iyyG~~~~w~-------l~~ 353 (424)
.+...... ......+..+++|++|||++|+.+...... ...++|++++||+| |+|+||||+|+++. +++
T Consensus 305 ~l~~~~~~--~~~~~~~~~~~~FldNHD~~R~~~~~~~~~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~~~~~l~~ 382 (479)
T PRK09441 305 DMRNIFDG--TLVEADPFHAVTFVDNHDTQPGQALESPVEPWFKPLAYALILLREEGYPCVFYGDYYGASGYYIDMPFKE 382 (479)
T ss_pred chHhhhCc--chhhcCcccceeeeccccCCCcccccccccccchHHHHHHHHhCCCCceeeEeccccCCCCCcccchHHH
Confidence 33222211 111123556789999999999987654222 23689999999999 99999999999874 899
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEEC-----CEEEEEECCC
Q 014447 354 AISKLAAVRNRNGINTASRVNILASDADVYIAAIG-----DRVIMKIGPK 398 (424)
Q Consensus 354 ~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~-----~~~lv~ln~~ 398 (424)
+|++|+++||++ +.|....+..++++++|.|. +.++|++||.
T Consensus 383 ~i~~Li~lRk~~---~~G~~~~~~~~~~~~~~~R~~~~~~~~vvvvinn~ 429 (479)
T PRK09441 383 KLDKLLLARKNF---AYGEQTDYFDHPNCIGWTRSGDEENPGLAVVISNG 429 (479)
T ss_pred HHHHHHHHHHHh---CCCCeeEeecCCCEEEEEEecCCCCccEEEEEECC
Confidence 999999999995 37888888888999999992 3588888875
No 6
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=1.3e-61 Score=497.42 Aligned_cols=360 Identities=19% Similarity=0.285 Sum_probs=264.7
Q ss_pred CCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHHH
Q 014447 19 PFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLK 94 (424)
Q Consensus 19 ~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl~ 94 (424)
+|+++.|+||+|. .|+.++++|||+||+++|||||+||||+|||+||++++. +|||++.||++|| |+|||++||+
T Consensus 1 ~W~~~~viYqi~~~~f~d~~~~~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd-~~~Gt~~df~ 79 (539)
T TIGR02456 1 LWYKDAVFYEVHVRSFFDSNGDGIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL-PEFGTIDDFK 79 (539)
T ss_pred CccccceEEEEehhHhhcCCCCCccCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC-hhhCCHHHHH
Confidence 5999999999995 244556789999999999999999999999999999986 7999999999999 9999999999
Q ss_pred HHHHHHHHcCCEEEEeeecccCCCCCCC----------CCcceeecCCCCCCCCCCCCCccccc--CCCccCCCCCCCCC
Q 014447 95 SLIQAFRQKGIKCLADMVINHRTAERKD----------GRGIYCIFEGGTSDDRLDWGPSFICR--GDKEYSDGQGNDDT 162 (424)
Q Consensus 95 ~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~ 162 (424)
+||++||++||+||+|+|+||+|.+|+. +..+|+.+.+... ...++...+... ..+.+....+.++.
T Consensus 80 ~Lv~~ah~~Gi~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~~~~~~~~y~ 158 (539)
T TIGR02456 80 DFVDEAHARGMRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDE-KYKDTRIIFVDTEKSNWTFDPVAKQYYW 158 (539)
T ss_pred HHHHHHHHCCCEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCc-ccccccccccccCCCCccccCCcCeeEE
Confidence 9999999999999999999999998851 1234444433110 001110000000 11112223344455
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------CHHHHHHH---HHhcCC-CeEE
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------APSITKVY---MENTSP-DFAV 225 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-------------~~~~~~~~---~~~~~p-~~~v 225 (424)
..+.+.+||||++||+||++|++++++|++ +||||||||+++++ ..+||+++ +++.+| ++++
T Consensus 159 ~~f~~~~pdln~~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~i 237 (539)
T TIGR02456 159 HRFFSHQPDLNYDNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLL 237 (539)
T ss_pred ecccCCCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEE
Confidence 567789999999999999999999999998 99999999999876 24799888 444567 7799
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cC-CceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcc
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AG-GAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNA 302 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (424)
||++.. ...+..|... .. ++++.|+|++...+...+ .++...+........... .+...
T Consensus 238 aE~~~~----------------~~~~~~y~~~~~~~~~d~~f~f~l~~~~~~~l~~~~~~~l~~~l~~~~~~~--~~~~~ 299 (539)
T TIGR02456 238 AEANQW----------------PEEVVAYFGDEGDPECHMAFNFPVMPRIFMALRREDRSPIIDILKETPDIP--DSCQW 299 (539)
T ss_pred EEeCCC----------------HHHHHHhhCCCCCCeeeeEEChhhhhhhhcccccCCHHHHHHHHHHhhhcc--CCCce
Confidence 998531 3445566543 12 578889998865544332 232222222111111111 12345
Q ss_pred eecccCCCCCc-------------------------------CcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC----
Q 014447 303 VTFIDNHDTGS-------------------------------TQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF---- 347 (424)
Q Consensus 303 ~~f~~nHD~~r-------------------------------~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~---- 347 (424)
++|++|||+.| +.+..+.+.+++++|++++||+||+|+||||+|+
T Consensus 300 ~~fl~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~ 379 (539)
T TIGR02456 300 CIFLRNHDELTLEMVTDEERDFMYAAYAPDPRMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGD 379 (539)
T ss_pred eeecCCCCccCccccChhhhhhhhhhccCCcchhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcC
Confidence 77999999954 2233333445789999999999999999999864
Q ss_pred --------------Ccc-----------------------------------------hHHHHHHHHHHHHhcCCCCCCC
Q 014447 348 --------------DWG-----------------------------------------LKEAISKLAAVRNRNGINTASR 372 (424)
Q Consensus 348 --------------~w~-----------------------------------------l~~~~~~L~~lR~~~~al~~G~ 372 (424)
+|+ ++++||+|++||+++++|..|.
T Consensus 380 ~~~~~~~~~~R~pm~W~~~~~~gfs~~~~~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~ 459 (539)
T TIGR02456 380 NIWLGDRNGVRTPMQWSPDRNAGFSSADPGQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGS 459 (539)
T ss_pred CCccCCCcCccCCcCcCCCCCCCCCCCCCcccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCc
Confidence 341 6889999999999999999999
Q ss_pred eEEEec-CCCEEEEEE---CCEEEEEECCCC
Q 014447 373 VNILAS-DADVYIAAI---GDRVIMKIGPKM 399 (424)
Q Consensus 373 ~~~~~~-~~~v~~~~r---~~~~lv~ln~~~ 399 (424)
+..+.. ++++++|.| +++++|++|.+.
T Consensus 460 ~~~l~~~~~~v~~f~R~~~~~~vlVv~N~s~ 490 (539)
T TIGR02456 460 LTFLPTGNRRVLAFLREYEGERVLCVFNFSR 490 (539)
T ss_pred eEEEecCCCCEEEEEEEcCCcEEEEEEeCCC
Confidence 998876 457999998 678889998764
No 7
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=5.1e-61 Score=495.47 Aligned_cols=353 Identities=21% Similarity=0.295 Sum_probs=255.0
Q ss_pred hccCCCCCCceEEEeecCCCCC--------------C--------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC---
Q 014447 15 AIFLPFTSPALLFQGFNWESSN--------------K--------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--- 69 (424)
Q Consensus 15 ~~~p~~~~~~v~~~~f~~ds~~--------------~--------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--- 69 (424)
...|.|+++.|+||+|. |.+. + +||||+||+++|+|||+|||++|||+||+++.
T Consensus 181 ~~~~~~W~~aviYqI~~-DRF~nGd~~Nd~~~g~~~d~~~~~~~f~GGdl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~ 259 (683)
T PRK09505 181 AAAPFDWHNATVYFVLT-DRFENGDPSNDHSYGRHKDGMQEIGTFHGGDLRGLTEKLDYLQQLGVNALWISSPLEQIHGW 259 (683)
T ss_pred CCCChhhccCcEEEEeh-hhhcCCCcccccccCcCCCCccccCcccCCCHHHHHHhhHHHHHcCCCEEEeCccccccccc
Confidence 34677889999999995 3321 1 26999999999999999999999999999862
Q ss_pred ------------CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC--------------
Q 014447 70 ------------APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDG-------------- 123 (424)
Q Consensus 70 ------------~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~-------------- 123 (424)
++|||.+.||+.|| ++|||++||++||++||++|||||||+|+||++..+...
T Consensus 260 ~~~g~~g~~~~~~yhgY~~~D~~~id-~~~Gt~~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~ 338 (683)
T PRK09505 260 VGGGTKGDFPHYAYHGYYTLDWTKLD-ANMGTEADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGD 338 (683)
T ss_pred cccccccCCCcCCCCCCCccccccCC-CCCCCHHHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcc
Confidence 57999999999999 999999999999999999999999999999999542110
Q ss_pred ------CcceeecCCCCCCCCCCCCCccc---ccCCCccCCCCC---------------CCCCCCCCCCCCCCCCC----
Q 014447 124 ------RGIYCIFEGGTSDDRLDWGPSFI---CRGDKEYSDGQG---------------NDDTGEDFQPAPDIDHL---- 175 (424)
Q Consensus 124 ------~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~---------------~~~~~~~~~~~~dln~~---- 175 (424)
...|..|... ...+|..... ..+...|..+.+ .....+....+||||++
T Consensus 339 ~~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~ 415 (683)
T PRK09505 339 ENKKTLGERWSDWQPA---AGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQA 415 (683)
T ss_pred ccccccCccccccccc---ccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccc
Confidence 0111111100 0112211100 001111211110 11112334678888886
Q ss_pred -------------------CHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhc----------C------
Q 014447 176 -------------------NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENT----------S------ 220 (424)
Q Consensus 176 -------------------np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~----------~------ 220 (424)
||+|+++|++++++|++++||||||+|+|++++.+||+++.++. +
T Consensus 416 ~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~FW~~~~~~~~~~l~~~k~~~~d~~~~ 495 (683)
T PRK09505 416 SGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKQEASAALAEWKKANPDKALD 495 (683)
T ss_pred cccchhhhcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 45999999999999999899999999999999999999983321 1
Q ss_pred --CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhc--chhhhhhhhcCCCCCCcC
Q 014447 221 --PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQ--GELWRLKDSNGKPPGFIG 296 (424)
Q Consensus 221 --p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 296 (424)
+++++||+|.... ....|.. .+++++++|++...+..++. ..+........ ...
T Consensus 496 ~~~~~~vGEvw~~~~----------------~~~~y~~--~~fDsv~NF~~~~~~~~~~~~~~~l~~~~~~~~---~~~- 553 (683)
T PRK09505 496 DAPFWMTGEAWGHGV----------------MKSDYYR--HGFDAMINFDYQEQAAKAVDCLAQMDPTYQQMA---EKL- 553 (683)
T ss_pred cCCeEEEEEecCCch----------------hhHHHHh--hcCccccCchHHHHHHHHHHHHHHHHHHHHHHh---hhc-
Confidence 3679999996321 1123433 46888999988765544332 12222221111 100
Q ss_pred cCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCC-------------------CCc--------
Q 014447 297 ILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHF-------------------FDW-------- 349 (424)
Q Consensus 297 ~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~-------------------~~w-------- 349 (424)
...+.++|++|||++|+.+... +.++.++|++++||+||+|+|||||| |+|
T Consensus 554 -~~~~~l~FLdNHDt~Rf~s~~~-~~~~~klAaall~tlpGiP~IYYGdEiGm~gg~~g~DP~~~~R~~M~W~~~~~~~~ 631 (683)
T PRK09505 554 -QDFNVLSYLSSHDTRLFFEGGQ-SYAKQRRAAELLLLAPGAVQIYYGDESARPFGPTGSDPLQGTRSDMNWQEVSGKSA 631 (683)
T ss_pred -CccceeecccCCChhhhhhhcC-chHHHHHHHHHHHhCCCCcEEEechhhCccCCCCCCCCcccccccCCccccccchH
Confidence 1234578999999999987765 33688999999999999999999985 346
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEE---CCEEEEEECC
Q 014447 350 GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAI---GDRVIMKIGP 397 (424)
Q Consensus 350 ~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r---~~~~lv~ln~ 397 (424)
+++++||+|++||+++|+|+.|.++.+. ++++++|.| +++++|++|.
T Consensus 632 ~Ll~~~kkLi~LRk~~pAL~~G~~~~l~-~~~~~aF~R~~~~d~vlVv~~~ 681 (683)
T PRK09505 632 ALLAHWQKLGQFRARHPAIGAGKQTTLS-LKQYYAFVREHGDDKVMVVWAG 681 (683)
T ss_pred HHHHHHHHHHHHHhhCHHhhCCceEEec-cCCEEEEEEEeCCCEEEEEEeC
Confidence 3899999999999999999999998874 568999999 6788999886
No 8
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=2.7e-60 Score=486.65 Aligned_cols=361 Identities=19% Similarity=0.283 Sum_probs=265.2
Q ss_pred CCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCC-CCCCcccccCCCCCCCCCHHHHHH
Q 014447 20 FTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAP-QGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 20 ~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~-~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
|+++.|+||+|. -|+.++++|||+||+++|+|||+|||++|||+||++++.. +||++.||++|| |+|||++||++
T Consensus 1 W~~~~v~Y~i~~~~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-~~~Gt~~~~~~ 79 (543)
T TIGR02403 1 WWQKKVIYQIYPKSFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-PLFGTMADFEE 79 (543)
T ss_pred CcccCEEEEEEhHHHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-cccCCHHHHHH
Confidence 889999999995 2555667899999999999999999999999999998864 799999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
||++||++||+||+|+|+|||+.+|+. +..+|+.+.+.....+.+|...+. ...+.+....++++.+.+.
T Consensus 80 lv~~ah~~gi~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~y~~~f~ 158 (543)
T TIGR02403 80 LVSEAKKRNIKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPKGKPPTNWQSKFG-GSAWEYFGDTGQYYLHLFD 158 (543)
T ss_pred HHHHHHHCCCEEEEEECccccccchHHHHHhhcCCCcccCceEecCCCCCCCCcccccCC-CcCccccCCCCceEEeccC
Confidence 999999999999999999999998851 223455554422112234433221 1122233345567777788
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-----------------------HHHHHHHHHhc--CC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------------------PSITKVYMENT--SP 221 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-----------------------~~~~~~~~~~~--~p 221 (424)
..+||||++||+|+++|.+++++|++ .||||||||+|++++ .+||+++.+.. +|
T Consensus 159 ~~~pdln~~np~v~~~i~~~~~~W~~-~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (543)
T TIGR02403 159 KTQADLNWENPEVREELKDVVNFWRD-KGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDN 237 (543)
T ss_pred CcCCccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999998 899999999999985 35888874432 45
Q ss_pred -CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHHhcc--------hhhhhhhhcCCC
Q 014447 222 -DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQG--------ELWRLKDSNGKP 291 (424)
Q Consensus 222 -~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~~~--------~~~~~~~~~~~~ 291 (424)
+|+|||+|... ...+..|... ...+++.|+|.. .......+ +...+.......
T Consensus 238 ~~~lvgE~~~~~---------------~~~~~~y~~~~~~~~d~~~nf~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (543)
T TIGR02403 238 DSVTVGEMSSTT---------------IENCIRYSNPENKELSMVFTFHH--LKVDYPNGEKWTLAKFDFAKLKEIFSTW 300 (543)
T ss_pred CeEEEEEeCCCC---------------HHHHHhhhCCCCCeeCeEEChhh--hhchhccccccccCCCCHHHHHHHHHHH
Confidence 78999998531 2344455432 235677777752 11111111 111221111000
Q ss_pred CCCcCcCCCcceecccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC--------------------
Q 014447 292 PGFIGILPQNAVTFIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF-------------------- 347 (424)
Q Consensus 292 ~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~-------------------- 347 (424)
...........++|++|||++|..+.++... +..++|+++++|+||+|+||||||+
T Consensus 301 ~~~~~~~~~~~~~fl~NHD~~R~~s~~g~~~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~ 380 (543)
T TIGR02403 301 QTGMQAGGGWNALFWNNHDQPRAVSRFGDDGEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLN 380 (543)
T ss_pred HHhccccCcceeeecCCCChhhHHHhcCCchhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHH
Confidence 0000001122367999999999988776322 2467888899999999999999742
Q ss_pred -------------------------------Cc----------------------------------chHHHHHHHHHHH
Q 014447 348 -------------------------------DW----------------------------------GLKEAISKLAAVR 362 (424)
Q Consensus 348 -------------------------------~w----------------------------------~l~~~~~~L~~lR 362 (424)
+| +++++||+|++||
T Consensus 381 ~~~~~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lR 460 (543)
T TIGR02403 381 AYDILLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALR 460 (543)
T ss_pred HHHHHhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHH
Confidence 23 2789999999999
Q ss_pred HhcCCCCCCCeEEEecC-CCEEEEEE---CCEEEEEECCCCC
Q 014447 363 NRNGINTASRVNILASD-ADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 363 ~~~~al~~G~~~~~~~~-~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
|++|+|..|.++.+..+ +++++|.| +++++|++|.+.+
T Consensus 461 k~~~aL~~G~~~~~~~~~~~v~a~~R~~~~~~~lVv~N~s~~ 502 (543)
T TIGR02403 461 KSEPVITDGDYQFLLPDDPSVWAYTRTYKNQKLLVINNFYGE 502 (543)
T ss_pred hhcccccCccEEEeecCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999999988765 47999999 6789999998644
No 9
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=5.3e-60 Score=483.64 Aligned_cols=363 Identities=17% Similarity=0.248 Sum_probs=266.9
Q ss_pred cCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 17 FLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
.|.|++++|+||+|. .|+.++++|||+||+++|+|||+|||++|||+||++++. .|||++.||++|| |+|||++|
T Consensus 4 ~~~W~~~~v~Yqi~~~~f~d~~~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-~~~Gt~~d 82 (551)
T PRK10933 4 LPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-PTYGTLDD 82 (551)
T ss_pred cchhhhcCeEEEEEchHhhcCCCCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-cccCCHHH
Confidence 488999999999996 244556789999999999999999999999999999876 6899999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC---------CCcceeecCCCCCC-CCCCCCCcccccCCCccCCCCCCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD---------GRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDT 162 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~---------~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~ 162 (424)
|++||++||++||+||+|+|+||+|.+|+. +..+|+.+.++.+. .+.+|...+ ....+.|.+..+.++.
T Consensus 83 ~~~lv~~~h~~gi~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~y~ 161 (551)
T PRK10933 83 FDELVAQAKSRGIRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKF-GGSAWRWHAESEQYYL 161 (551)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCCCCCCcccccC-CCccccccCCCCceEe
Confidence 999999999999999999999999998852 23456666553322 123443332 2233445555566777
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------------------HHHHHHHHhc
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------------------SITKVYMENT 219 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------------------~~~~~~~~~~ 219 (424)
+.+.+.+||||++||+||++|++++++|++ +||||||+|+|++++. +|++++.+..
T Consensus 162 ~~f~~~~pdLn~~np~V~~~l~~~~~~W~~-~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 162 HLFAPEQADLNWENPAVRAELKKVCEFWAD-RGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDV 240 (551)
T ss_pred ecccccCCccCCCCHHHHHHHHHHHHHHHH-CCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHh
Confidence 778899999999999999999999999997 9999999999999863 4666664432
Q ss_pred -C-C-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHHhcch--------hhhhhhh
Q 014447 220 -S-P-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAAVQGE--------LWRLKDS 287 (424)
Q Consensus 220 -~-p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~~~~~--------~~~~~~~ 287 (424)
+ + .++|||++... ...+..|... ...+++.|+|.. .......+. ...+...
T Consensus 241 ~~~~~~~~vgE~~~~~---------------~~~~~~y~~~~~~~~~~~fnf~~--~~~~~~~~~~~~~~~~~~~~~~~~ 303 (551)
T PRK10933 241 FTPRGLMTVGEMSSTS---------------LEHCQRYAALTGSELSMTFNFHH--LKVDYPNGEKWTLAKPDFVALKTL 303 (551)
T ss_pred hcccCcEEEEeecCCC---------------HHHHHHhhcccCCeeeeEecHHH--hhhhhccCCcccccccCHHHHHHH
Confidence 2 2 67999998531 3444555432 234556666642 221111111 1111111
Q ss_pred cCCCCCCcCcCCCcceecccCCCCCcCcccCCCCch----hHHHHHHHHHcCCCeeEEecCCCC----------------
Q 014447 288 NGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSD----KVMLGYAYILTHPGTPCIFYDHFF---------------- 347 (424)
Q Consensus 288 ~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~----~~~~a~a~~l~~pG~P~iyyG~~~---------------- 347 (424)
......... .......|++|||++|..+.++.+.+ ..+++.+++||+||+|+||||||+
T Consensus 304 ~~~~~~~~~-~~~~~~~fl~NHD~~R~~sr~g~~~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~ 382 (551)
T PRK10933 304 FRHWQQGMH-NVAWNALFWCNHDQPRIVSRFGDEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDV 382 (551)
T ss_pred HHHHHHhhc-ccCeeccccCCCCcccHHHHcCCchhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCH
Confidence 000000000 01123578999999999888763322 356778899999999999999852
Q ss_pred -----------------------------------Cc----------------------------------chHHHHHHH
Q 014447 348 -----------------------------------DW----------------------------------GLKEAISKL 358 (424)
Q Consensus 348 -----------------------------------~w----------------------------------~l~~~~~~L 358 (424)
+| +++.+||+|
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~L 462 (551)
T PRK10933 383 ESLNMFAELRNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKL 462 (551)
T ss_pred HHHHHHHHHhhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHH
Confidence 24 277999999
Q ss_pred HHHHHhcCCCCCCCeEEEec-CCCEEEEEE---CCEEEEEECCCCC
Q 014447 359 AAVRNRNGINTASRVNILAS-DADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 359 ~~lR~~~~al~~G~~~~~~~-~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
++||+++|+|..|.+..+.. ++++++|.| +++++|++|.+.+
T Consensus 463 i~lRk~~~aL~~G~~~~~~~~~~~v~af~R~~~~~~~lvv~N~s~~ 508 (551)
T PRK10933 463 IALRKQEPVLTWGDYQDLLPNHPSLWCYRREWQGQTLLVIANLSRE 508 (551)
T ss_pred HHHhhcChhhccceeEEeccCCCcEEEEEEEcCCcEEEEEEECCCC
Confidence 99999999999999987754 467999999 6789999998653
No 10
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=1.3e-53 Score=411.62 Aligned_cols=287 Identities=25% Similarity=0.446 Sum_probs=201.9
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
|||+||++||||||+|||++|||+||++++ .+|||++.||++|| |+|||++||++||++||++||+||+|+|+||++.
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~~ 79 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-PRFGTMEDFKELVDAAHKRGIKVILDVVPNHTSD 79 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-TTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEET
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-cccchhhhhhhhhhccccccceEEEeeecccccc
Confidence 899999999999999999999999999998 79999999999999 9999999999999999999999999999999999
Q ss_pred CCCC----------CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014447 119 ERKD----------GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (424)
Q Consensus 119 ~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~ 188 (424)
+|+. ...+|+.+..+....+.+|... .+...|.... ......++..+||||++||+||++|+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~dln~~n~~v~~~i~~~~~ 155 (316)
T PF00128_consen 80 DHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSY---FGGSNWEYDD-WGDEYQFWSDLPDLNYENPEVREYIIDVLK 155 (316)
T ss_dssp TSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCS---TTTSSEESCH-HTHCHSSSTTSEEBETTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccceeecccccccccccccc---cccccccccc-cccccccccccchhhhhhhhhhhhhccccc
Confidence 9852 1223333322111111222210 1111111100 000035789999999999999999999999
Q ss_pred HHHHhcCCCeEEecccCCCCHHHHHHHHHhc---CC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCcee
Q 014447 189 WLKTEIGFDGWRFDFVKGYAPSITKVYMENT---SP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVA 263 (424)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~---~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (424)
+|++ .||||||+|+|++++.++|+++.++. .| .+++||++... ...+..+... ......
T Consensus 156 ~w~~-~giDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~i~E~~~~~---------------~~~~~~~~~~~~~~~~~ 219 (316)
T PF00128_consen 156 FWIE-EGIDGFRLDAAKHIPKEFWKEFRDEVKEEKPDFFLIGEVWGGD---------------NEDLRQYAYDGYFDLDS 219 (316)
T ss_dssp HHHH-TTESEEEETTGGGSSHHHHHHHHHHHHHHHTTSEEEEEESSSS---------------HHHHHHHHHHGTTSHSE
T ss_pred chhh-ceEeEEEEccccccchhhHHHHhhhhhhhccccceeeeeccCC---------------ccccchhhhccccccch
Confidence 9998 88999999999999999999995543 35 78999999642 2223233222 122333
Q ss_pred eecccchHHHHHHh----cch--hhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCC
Q 014447 264 AFDFTTKGILQAAV----QGE--LWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPG 337 (424)
Q Consensus 264 ~~df~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG 337 (424)
.+++.......... .+. ...+............ .+...++|++|||+.|..+.......++++|++++||+||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~~~ll~~pG 298 (316)
T PF00128_consen 220 VFDFPDYGLRSSFFDFWRHGDGDASDLANWLSSWQSSYP-DPYRAVNFLENHDTPRFASRFGNNRDRLKLALAFLLTSPG 298 (316)
T ss_dssp EEHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHST-TGGGEEEESSHTTSSTHHHHTTTHHHHHHHHHHHHHHSSS
T ss_pred hhcccccccccchhhhhccccchhhhhhhhhhhhhhhhc-ccceeeecccccccccchhhhcccchHHHHHHHHHHcCCC
Confidence 45555443333322 111 1111111100000000 1345689999999999888776444489999999999999
Q ss_pred eeEEecCCCCC
Q 014447 338 TPCIFYDHFFD 348 (424)
Q Consensus 338 ~P~iyyG~~~~ 348 (424)
+|+||||||++
T Consensus 299 ~P~iy~G~E~g 309 (316)
T PF00128_consen 299 IPMIYYGDEIG 309 (316)
T ss_dssp EEEEETTGGGT
T ss_pred ccEEEeChhcc
Confidence 99999999976
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=2.1e-51 Score=419.55 Aligned_cols=339 Identities=23% Similarity=0.308 Sum_probs=229.3
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
.+.|||++.. .++.+ .|||+||+++|+|||+||||+||||||++.+ .+|||++.+|++|+ ++|||++|||+||++
T Consensus 92 ~~~viYE~hv-~~f~~-~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G~~~e~k~lV~~ 168 (542)
T TIGR02402 92 EEAVIYELHV-GTFTP-EGTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYGGPDDLKALVDA 168 (542)
T ss_pred cccEEEEEEh-hhcCC-CCCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccCCHHHHHHHHHH
Confidence 4569999997 44433 6999999999999999999999999998876 57999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH--
Q 014447 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP-- 177 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np-- 177 (424)
||++||+||||+|+||++.+++ |... .. + |+.. . .. ..| .+++|+++|
T Consensus 169 aH~~Gi~VilD~V~NH~~~~~~-----~~~~-----~~-~-y~~~---~-----------~~--~~w--g~~~n~~~~~~ 218 (542)
T TIGR02402 169 AHGLGLGVILDVVYNHFGPEGN-----YLPR-----YA-P-YFTD---R-----------YS--TPW--GAAINFDGPGS 218 (542)
T ss_pred HHHCCCEEEEEEccCCCCCccc-----cccc-----cC-c-cccC---C-----------CC--CCC--CCccccCCCcH
Confidence 9999999999999999986643 1100 00 0 1110 0 00 011 246999999
Q ss_pred -HHHHHHHHHHHHHHHhcCCCeEEecccCCCCH----HHHHHH---HHhcCC----CeEEeeecCCCC-CCC---CCCC-
Q 014447 178 -RVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP----SITKVY---MENTSP----DFAVGEKWDSLS-YGP---DGKP- 240 (424)
Q Consensus 178 -~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~----~~~~~~---~~~~~p----~~~v~E~~~~~~-~~~---~~~~- 240 (424)
+||++|++++++|++++||||||+|+++.++. +||+++ +++++| +++|||.+.+.. ... .+..
T Consensus 219 ~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~ 298 (542)
T TIGR02402 219 DEVRRYILDNALYWLREYHFDGLRLDAVHAIADTSAKHILEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYG 298 (542)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhccccHHHHHHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccc
Confidence 99999999999999999999999999988853 488877 445544 569999875422 110 0000
Q ss_pred ---CCCCCCchhHHHHHHHhcC-CceeeecccchHHHHHHh-cc-----hhhhhhh-hcCCCCCCcCcCCCcceecccCC
Q 014447 241 ---DANQDGHRGALKDWVQAAG-GAVAAFDFTTKGILQAAV-QG-----ELWRLKD-SNGKPPGFIGILPQNAVTFIDNH 309 (424)
Q Consensus 241 ---~~~~~~~~~~~~~~~~~~~-~~~~~~df~~~~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~f~~nH 309 (424)
.++ +.++..+..++.+.. +..+.+.- ....+...+ .+ +...... ..+..... ..+...++|++||
T Consensus 299 ~d~~~~-~~~~~~~~~~~~g~~~g~~~~~~~-~~~~l~~~l~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~vnfl~nH 374 (542)
T TIGR02402 299 LDAQWN-DDFHHALHVLLTGERQGYYADFGD-PLAALAKTLRDGFVYDGEYSPFRGRPHGRPSGD--LPPHRFVVFIQNH 374 (542)
T ss_pred eEEEEC-chHHHHHHHHhcCCcceeecccCc-CHHHHHHHHHHhcccCccccccccccCCCCCCC--CCHHHEEEEccCc
Confidence 011 123344444432110 01000000 001111111 00 0000000 00000000 0245679999999
Q ss_pred CC-------CcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC-----------------------------------
Q 014447 310 DT-------GSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF----------------------------------- 347 (424)
Q Consensus 310 D~-------~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~----------------------------------- 347 (424)
|+ .|+.... +.++.++|.+++||+||+||||||||+
T Consensus 375 D~~gn~~~~~Rl~~~~--~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~ 452 (542)
T TIGR02402 375 DQIGNRALGERLSQLL--SPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWD 452 (542)
T ss_pred ccccccchhhhhhhcC--CHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccc
Confidence 97 5665544 347899999999999999999999852
Q ss_pred ------------------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEEe----cCCCEEEEEE-CCEEEEEE
Q 014447 348 ------------------DW---------GLKEAISKLAAVRNRNGINTASRVNILA----SDADVYIAAI-GDRVIMKI 395 (424)
Q Consensus 348 ------------------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~----~~~~v~~~~r-~~~~lv~l 395 (424)
+| +++++||+||+|||++++|+.+..+.+. .++.++++.. +++++|++
T Consensus 453 ~~~~pdp~~~~~~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 532 (542)
T TIGR02402 453 PEDVPDPQDEETFLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVVDEDPGWVAVRFGRGELVLAA 532 (542)
T ss_pred cccCCCCCchhhHhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeeecCCCCEEEEEECCCeEEEEE
Confidence 36 2789999999999999999887754432 3567888776 56889999
Q ss_pred CCCC
Q 014447 396 GPKM 399 (424)
Q Consensus 396 n~~~ 399 (424)
|.+.
T Consensus 533 N~~~ 536 (542)
T TIGR02402 533 NLST 536 (542)
T ss_pred eCCC
Confidence 9854
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=5e-51 Score=426.14 Aligned_cols=354 Identities=20% Similarity=0.261 Sum_probs=234.6
Q ss_pred CceEEEeecCCCC----CCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHH
Q 014447 23 PALLFQGFNWESS----NKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 23 ~~v~~~~f~~ds~----~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
.-+||++.. .++ .++.|||++++++| +|||+||||+||||||++++ .+|||+++||++|+ |+|||++|||+
T Consensus 147 ~~~iYe~hv-~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~-~~~Gt~~d~k~ 224 (633)
T PRK12313 147 PISIYEVHL-GSWKRNEDGRPLSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPT-SRYGTPEDFMY 224 (633)
T ss_pred CceEEEEeh-hccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCC-CCCCCHHHHHH
Confidence 358999886 332 23459999999995 99999999999999999987 57999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (424)
||++||++||+||||+|+||++.++.. ...|.+ .+ +. .+.++...+. ..| +.++||++
T Consensus 225 lv~~~H~~Gi~VilD~V~nH~~~~~~~----~~~~~~-~~-----~~---------~~~~~~~~~~--~~w-~~~~~n~~ 282 (633)
T PRK12313 225 LVDALHQNGIGVILDWVPGHFPKDDDG----LAYFDG-TP-----LY---------EYQDPRRAEN--PDW-GALNFDLG 282 (633)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----ccccCC-Cc-----ce---------eecCCCCCcC--CCC-CCcccCCC
Confidence 999999999999999999999876431 011111 00 00 0001100010 112 23689999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCC-----------------------CHHHHHHH---HHhcCC-CeEEeee
Q 014447 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY-----------------------APSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 176 np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-----------------------~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||.
T Consensus 283 ~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~ 362 (633)
T PRK12313 283 KNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENLEAIYFLQKLNEVVYLEHPDVLMIAEE 362 (633)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 99999999999999999999999999988644 25788888 556677 7899997
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCC-CCcCcCCCcceecc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPP-GFIGILPQNAVTFI 306 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~f~ 306 (424)
+...... ..+ ...+.-+++..+++...+.+...+..+ ..+ ........ .+...... ..+++
T Consensus 363 ~~~~~~~--~~~-------------~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e-~~~l~ 425 (633)
T PRK12313 363 STAWPKV--TGP-------------VEVGGLGFDYKWNMGWMNDTLRYFEEDPIYR-KYHHNLLTFSFMYAFSE-NFVLP 425 (633)
T ss_pred CCCCccc--ccc-------------ccCCCCCcCceeCcHHHHHHHHHhhhCcccc-ccccccchHHHhhhhhc-ccccC
Confidence 6432100 000 000011233333333333333322211 100 00000000 00000011 12467
Q ss_pred cCCCCC-----cCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHH
Q 014447 307 DNHDTG-----STQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAIS 356 (424)
Q Consensus 307 ~nHD~~-----r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~ 356 (424)
+|||+. |+...+..+. +++|++++++||+||+||||||+|+ +| ++.+++|
T Consensus 426 ~sHD~~~~g~~~~~~~~~g~~~~~~~~~r~~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~r 505 (633)
T PRK12313 426 FSHDEVVHGKKSLMHKMPGDRWQQFANLRLLYTYMITHPGKKLLFMGSEFGQFLEWKHDESLEWHLLEDPMNAGMQRFTS 505 (633)
T ss_pred CCCcccccCCccHHHhcCCCHHHHHHHHHHHHHHHHhCCCCcEeecccccccCccCCccCCCCccccCChhHHHHHHHHH
Confidence 899994 4333333222 5789999999999999999999975 35 3788999
Q ss_pred HHHHHHHhcCCCCC-----CCeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 357 KLAAVRNRNGINTA-----SRVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 357 ~L~~lR~~~~al~~-----G~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
+|++||+++|+|+. +.++++.. ++.+++|.|. ++++||+|.+.. ++....+.|+..++.+.
T Consensus 506 ~Li~LRr~~paL~~~d~~~~~~~~l~~~~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~~g~~~~ilnsd~ 585 (633)
T PRK12313 506 DLNQLYKDEPALWELDFSPDGFEWIDADDADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPVAGIYEEILNTDS 585 (633)
T ss_pred HHHHHHHhChHhhcccCCCCCcEEEECcCCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCCCCeEEEEEcCCc
Confidence 99999999999974 45677764 3469999992 468888998642 12122346777776554
No 13
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.3e-50 Score=418.46 Aligned_cols=352 Identities=17% Similarity=0.212 Sum_probs=233.8
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
.+||++.. .++.+ .|+|++|+++| +|||+||||+||||||++++ .+|||+++||++|+ ++|||.+|||+||++|
T Consensus 139 ~~iYe~hv-~~~~~-~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~Gt~~dlk~lV~~~ 215 (613)
T TIGR01515 139 VSIYELHL-GSWRH-GLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFGTPDDFMYFVDAC 215 (613)
T ss_pred ceEEEEeh-hhccC-CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccCCHHHHHHHHHHH
Confidence 47898875 44433 49999999997 99999999999999999986 47999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
|++||+||||+|+||++.++.. +..|.+ . +.|. . . +..... ...| +.++||++||+||
T Consensus 216 H~~Gi~VilD~V~NH~~~~~~~----~~~~~~-~----~~y~---~-~------~~~~~~--~~~w-~~~~~~~~~~~Vr 273 (613)
T TIGR01515 216 HQAGIGVILDWVPGHFPKDDHG----LAEFDG-T----PLYE---H-K------DPRDGE--HWDW-GTLIFDYGRPEVR 273 (613)
T ss_pred HHCCCEEEEEecccCcCCccch----hhccCC-C----ccee---c-c------CCccCc--CCCC-CCceecCCCHHHH
Confidence 9999999999999999876531 111111 0 0010 0 0 000000 1122 3578999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeecCCC
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDSL 232 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~~~~ 232 (424)
++|++++++|++++||||||+|+++++ +.+||+++ +++.+| +++|||.+...
T Consensus 274 ~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~ 353 (613)
T TIGR01515 274 NFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEW 353 (613)
T ss_pred HHHHHHHHHHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCC
Confidence 999999999999999999999997544 24799888 555667 78999976431
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
. ........+.-+++..+++...+.+...+.. ...+..........+..... ....+++|||+
T Consensus 354 ~---------------~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~sHD~ 417 (613)
T TIGR01515 354 P---------------GVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDPVERQYHHQLITFSMLYAFS-ENFVLPLSHDE 417 (613)
T ss_pred c---------------cccccccCCcCCcCeeeCchHHHHHHHHHhhChhhHhhccccccHHHHHHhh-hccccCCCCCC
Confidence 1 0000001111234444554444444433321 11111100000000000000 11336789999
Q ss_pred C-----cCcccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHHHHHHH
Q 014447 312 G-----STQRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAISKLAAV 361 (424)
Q Consensus 312 ~-----r~~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~~L~~l 361 (424)
. |+......+ .+++|+++++++|+||+||||||+|+ +| ++.+++|+|++|
T Consensus 418 ~~~g~~~i~~~~~g~~~~~~~~~r~~~~~~~t~pG~plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k~L~~L 497 (613)
T TIGR01515 418 VVHGKKSLLNKMPGDYWQKFANYRALLGYMWAHPGKKLLFMGSEFAQGSEWNDTEQLDWHLLSFPMHQGVSVFVRDLNRT 497 (613)
T ss_pred cccCcccHHHhCCCchHHHHHHHHHHHHHHHhCCCCCEEEcchhcCcCCCCCCCccCCCccccCcccHHHHHHHHHHHHH
Confidence 4 333333322 25789999999999999999999864 45 378899999999
Q ss_pred HHhcCCCCCC-----CeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCC
Q 014447 362 RNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGT 416 (424)
Q Consensus 362 R~~~~al~~G-----~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~ 416 (424)
|+++|+|..| .++++.. ++.+++|.|. ++++|++|.+.. ++-..++.|+..++.+
T Consensus 498 r~~~paL~~~~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~~g~~~~il~Sd 571 (613)
T TIGR01515 498 YQKSKALYEHDFDPQGFEWIDVDDDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQPGQYREVLNSD 571 (613)
T ss_pred HhhCHHhhccCCCCCceEEEEcccCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCCCCeEEEEEeCC
Confidence 9999999644 4556643 4579999983 368899998543 2211134566666544
No 14
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1e-50 Score=421.26 Aligned_cols=360 Identities=21% Similarity=0.259 Sum_probs=241.8
Q ss_pred ceEEEeecCCCC---CC---CCCcHHHHHhh-----------hhHHHHcCCCEEEeCCCCCCCC----------CCCCCc
Q 014447 24 ALLFQGFNWESS---NK---AGGWYNSLKNS-----------IPDLSNAGITHVWLPPPSQSVA----------PQGYMP 76 (424)
Q Consensus 24 ~v~~~~f~~ds~---~~---~~G~~~gi~~~-----------L~ylk~lGv~~I~l~Pi~~~~~----------~~gY~~ 76 (424)
.|||++...+.. +. ..|+|.+++++ |+|||+||||+||||||++.++ +|||++
T Consensus 128 ~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~ 207 (605)
T TIGR02104 128 AIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDP 207 (605)
T ss_pred cEEEEEecchhccCCCCCcCCCCceeeeeccCccccccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCC
Confidence 489988852221 11 25888887765 9999999999999999998753 499999
Q ss_pred ccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCccccc
Q 014447 77 GRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICR 148 (424)
Q Consensus 77 ~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 148 (424)
.||++++ ++||+ .+|||+||++||++||+||||+|+||++..... +|.+.. +.|+.. ..
T Consensus 208 ~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~------~f~~~~----~~~~~~--~~ 274 (605)
T TIGR02104 208 LNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSREES------PFEKTV----PGYYYR--YN 274 (605)
T ss_pred ccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCCCCC------cccCCC----CCeeEE--EC
Confidence 9999999 99987 589999999999999999999999999753210 122110 111100 00
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHH---HhcCC-CeE
Q 014447 149 GDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYM---ENTSP-DFA 224 (424)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~---~~~~p-~~~ 224 (424)
....+.+ ......++|+++|+||++|++++++|++++||||||+|++++++.+||+++. ++.+| +++
T Consensus 275 ~~g~~~~---------~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~~~~~~~~~~~~~p~~~l 345 (605)
T TIGR02104 275 EDGTLSN---------GTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIETMNEIRKALNKIDPNILL 345 (605)
T ss_pred CCCCccC---------CCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHHHHHHHHHHHHhhCCCeEE
Confidence 0001111 1111247999999999999999999999999999999999999999999884 45567 779
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHh-cCCceeeecccchHHHHHH---------hcch---hhhhhhhcCCC
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQA-AGGAVAAFDFTTKGILQAA---------VQGE---LWRLKDSNGKP 291 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~df~~~~~~~~~---------~~~~---~~~~~~~~~~~ 291 (424)
+||.|...... . .......... .-.....|++.++..+... ..|. ...+.......
T Consensus 346 igE~w~~~~~~-------~----~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~~~l~~~ 414 (605)
T TIGR02104 346 YGEGWDLGTPL-------P----PEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVKKGILGS 414 (605)
T ss_pred EEccCCCCCCc-------c----hhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHHhheeCC
Confidence 99999753210 0 0000000000 0012345677766666521 1111 11222211100
Q ss_pred C-----CCcCcCCCcceecccCCCCCcCcccCCC---------CchhHHHHHHHHHcCCCeeEEecCCCC----------
Q 014447 292 P-----GFIGILPQNAVTFIDNHDTGSTQRLWPF---------PSDKVMLGYAYILTHPGTPCIFYDHFF---------- 347 (424)
Q Consensus 292 ~-----~~~~~~~~~~~~f~~nHD~~r~~~~~~~---------~~~~~~~a~a~~l~~pG~P~iyyG~~~---------- 347 (424)
. ......|...++|++|||+.|+...+.. ..++.++|++++|++||+||||||||+
T Consensus 415 ~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~~~~~~~~~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~ 494 (605)
T TIGR02104 415 IELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPDETEEQLKKRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENS 494 (605)
T ss_pred hhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCceeecchhhhccCCCCCCC
Confidence 0 0011245678999999999887433211 134789999999999999999999964
Q ss_pred ----------Cc-------chHHHHHHHHHHHHhcCCCCCCCeE-------EEe-cCCCEEEEEEC--------CEEEEE
Q 014447 348 ----------DW-------GLKEAISKLAAVRNRNGINTASRVN-------ILA-SDADVYIAAIG--------DRVIMK 394 (424)
Q Consensus 348 ----------~w-------~l~~~~~~L~~lR~~~~al~~G~~~-------~~~-~~~~v~~~~r~--------~~~lv~ 394 (424)
+| ++++++|+|++||+++|+|+.|.+. .+. .++.+++|.|. ++++|+
T Consensus 495 y~~~d~~~~ldW~~~~~~~~~~~~~~~Li~lRk~~pal~~~~~~~i~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv 574 (605)
T TIGR02104 495 YNSPDSINQLDWDRKATFKDDVNYIKGLIALRKAHPAFRLSSAEDIRKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVI 574 (605)
T ss_pred ccCCCcccccCccccccchHHHHHHHHHHHHHhhCccccCCChhhhcceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEE
Confidence 35 3899999999999999999988753 222 24679999982 268999
Q ss_pred ECCCCCCCCc---CCCCcEEEEeCC
Q 014447 395 IGPKMDIGNL---IPSDFKVAADGT 416 (424)
Q Consensus 395 ln~~~~~~~~---~~~~~~~~~~~~ 416 (424)
+|.+...-.. .++.|+..++..
T Consensus 575 ~N~s~~~~~v~lp~~~~w~~~~~~~ 599 (605)
T TIGR02104 575 HNANPEPVDIQLPSDGTWNVVVDNK 599 (605)
T ss_pred EeCCCCCeEEECCCCCCEEEEECCC
Confidence 9986432111 134677776654
No 15
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.1e-49 Score=404.25 Aligned_cols=354 Identities=18% Similarity=0.187 Sum_probs=235.3
Q ss_pred ceEEEeec--CCCCCCC-CCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 24 ALLFQGFN--WESSNKA-GGWYNSLKNSI-PDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 24 ~v~~~~f~--~ds~~~~-~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
-+||++-. |....++ -|+|++++++| +|||+||||+|+||||.+.+ .+|||++.+|++++ ++|||.+|||+||
T Consensus 145 ~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g~~~~~~~lv 223 (639)
T PRK14706 145 ISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLGTPEDFKYLV 223 (639)
T ss_pred cEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccCCHHHHHHHH
Confidence 58888774 2211222 37999999997 89999999999999999975 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.++.. ...|. +++. +. +.+....+ ...|.. ..+|+.+|
T Consensus 224 ~~~H~~gi~VilD~v~nH~~~~~~~----l~~~d-g~~~----y~----------~~~~~~g~--~~~w~~-~~~~~~~~ 281 (639)
T PRK14706 224 NHLHGLGIGVILDWVPGHFPTDESG----LAHFD-GGPL----YE----------YADPRKGY--HYDWNT-YIFDYGRN 281 (639)
T ss_pred HHHHHCCCEEEEEecccccCcchhh----hhccC-CCcc----ee----------ccCCcCCc--CCCCCC-cccCCCCH
Confidence 9999999999999999999876431 11111 1110 00 00000000 112222 24899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC----------------------CHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY----------------------APSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~----------------------~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
+||++|++++++|++|+||||||+|++.+| ...||+.+ +++.+| +++|||.+.+
T Consensus 282 eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~ 361 (639)
T PRK14706 282 EVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTS 361 (639)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 999999999999999999999999998876 23677777 556677 7899998753
Q ss_pred CCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCC
Q 014447 232 LSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHD 310 (424)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD 310 (424)
-+ ... ..... ..+++..+++...+.+...+ ...+.+.............. ......+++|||
T Consensus 362 ~~-------~v~--------~~~~~-G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~~~~y~-~~e~~il~~SHD 424 (639)
T PRK14706 362 FP-------GVT--------VPTPY-GLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTFFNVYR-TSENYVLAISHD 424 (639)
T ss_pred Cc-------Ccc--------cccCC-CCccccEeccHHHHHHHHHhccCchhhhhchhccchhhhhh-ccccEecCCCCc
Confidence 11 000 00011 12344445444444333322 22222211110000000000 011134789999
Q ss_pred CCcCcc--c---CCCC----chhHHHHHHHHHcCCCeeEEecCCCCC------------c---------chHHHHHHHHH
Q 014447 311 TGSTQR--L---WPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------W---------GLKEAISKLAA 360 (424)
Q Consensus 311 ~~r~~~--~---~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w---------~l~~~~~~L~~ 360 (424)
+.+... + ...+ .+++|+++++++|+||+|+||||+|++ | ++.+++|+|++
T Consensus 425 ev~~~k~sl~~k~~g~~~~~~a~~r~~~~~~~t~PG~pLiFmG~EfG~~~ew~~~~~l~W~l~~~~~~~~l~~~~k~L~~ 504 (639)
T PRK14706 425 EVVHLKKSMVMKMPGDWYTQRAQYRAFLAMMWTTPGKKLLFMGQEFAQGTEWNHDASLPWYLTDVPDHRGVMNLVRRLNQ 504 (639)
T ss_pred cccCCccchHhHcCCCHHHHHHHHHHHHHHHHhCCCCcEEEeccccCCCCCCCcccCCCCcccCCHHHHHHHHHHHHHHH
Confidence 988642 1 1111 256899999999999999999999764 5 27889999999
Q ss_pred HHHhcCCCCCCC-----eEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 361 VRNRNGINTASR-----VNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 361 lR~~~~al~~G~-----~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
||+++|+|..|. ++++.. ++.|+||.|. +.+|||+|.+.. ++-..++.|+..++.+.
T Consensus 505 L~k~~paL~~gd~~~~~f~wi~~~d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~~g~~~~i~nsd~ 580 (639)
T PRK14706 505 LYRERPDWHRGDKREEGLYWVSADDTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQGGEYRVLLSTDD 580 (639)
T ss_pred HHHhCHHHhhCCCCCCCeEEEEeecCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCCCCeEEEEEcCCc
Confidence 999999997665 555543 4689999992 238888888541 33333446666666553
No 16
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=6.5e-49 Score=414.81 Aligned_cols=354 Identities=17% Similarity=0.230 Sum_probs=230.7
Q ss_pred ceEEEeecCCC-----CCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHHHH
Q 014447 24 ALLFQGFNWES-----SNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 24 ~v~~~~f~~ds-----~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
-++|++.. .+ .++..|||++|+++| +|||+||||+||||||++++. +|||+++||++|+ |+|||++|||+
T Consensus 242 ~~iYe~hv-~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-~~~Gt~~dfk~ 319 (726)
T PRK05402 242 ISIYEVHL-GSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-SRFGTPDDFRY 319 (726)
T ss_pred cEEEEEeh-hhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-cccCCHHHHHH
Confidence 48998875 22 223358999999996 999999999999999999774 7999999999999 99999999999
Q ss_pred HHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC
Q 014447 96 LIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL 175 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~ 175 (424)
||++||++||+||||+|+||++.++.. +..|.+ ++ .+. . .+. ..+. ...|. ..+||++
T Consensus 320 lV~~~H~~Gi~VilD~V~NH~~~~~~~----~~~~~~-~~----~y~-~---~~~-----~~~~---~~~w~-~~~~n~~ 377 (726)
T PRK05402 320 FVDACHQAGIGVILDWVPAHFPKDAHG----LARFDG-TA----LYE-H---ADP-----REGE---HPDWG-TLIFNYG 377 (726)
T ss_pred HHHHHHHCCCEEEEEECCCCCCCCccc----hhccCC-Cc----cee-c---cCC-----cCCc---cCCCC-CccccCC
Confidence 999999999999999999999876431 111111 00 000 0 000 0000 01111 2368999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEee
Q 014447 176 NPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGE 227 (424)
Q Consensus 176 np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E 227 (424)
||+||++|++++++|++++||||||+|++.++ +.+||+++ +++.+| +++|||
T Consensus 378 ~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 378 RNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 99999999999999999999999999987654 24688888 556677 779999
Q ss_pred ecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecc
Q 014447 228 KWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFI 306 (424)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 306 (424)
...... ....+.. ....+++..+++...+.+...+ .....+................. ..+++
T Consensus 458 ~~~~~~--~~~~~~~-------------~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~l~ 521 (726)
T PRK05402 458 ESTAWP--GVTRPTE-------------EGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNELTFSLLYAYSE-NFVLP 521 (726)
T ss_pred CCCCCc--Ccccccc-------------CCCCCCCceecCCcchHHHHHHhhCcccccccccchhHHHhHhhhc-cccCC
Confidence 653211 0000000 0001223333333322222221 11110000000000000000011 13577
Q ss_pred cCCCCCcC-----cccCCCC----chhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHH
Q 014447 307 DNHDTGST-----QRLWPFP----SDKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAIS 356 (424)
Q Consensus 307 ~nHD~~r~-----~~~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~ 356 (424)
+|||+.+. ......+ .+++|+++++++|+||+||||||+|+ +| ++.+++|
T Consensus 522 ~sHD~~~~g~~~l~~~~~g~~~~~~~~lrl~~~~~~t~pG~Plif~G~E~g~~~~~~~~~~l~W~~~~~~~~~~l~~~~k 601 (726)
T PRK05402 522 LSHDEVVHGKGSLLGKMPGDDWQKFANLRAYYGYMWAHPGKKLLFMGGEFGQGREWNHDASLDWHLLDFPWHRGVQRLVR 601 (726)
T ss_pred CCCceeeeCcccHHhhCCCCHHHHHHHHHHHHHHHHHCCCcCEeeCchhcCCCCCCCccCcCCccccCCcchHHHHHHHH
Confidence 89999642 2222212 24688999999999999999999964 46 3888999
Q ss_pred HHHHHHHhcCCCCCC-----CeEEEec---CCCEEEEEEC-----CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 357 KLAAVRNRNGINTAS-----RVNILAS---DADVYIAAIG-----DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 357 ~L~~lR~~~~al~~G-----~~~~~~~---~~~v~~~~r~-----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
+|++||+++|+|+.| .++++.. ++.|++|.|. ++++||+|.+.. ++-...+.|+..++.+.
T Consensus 602 ~Li~Lr~~~~aL~~g~~~~~~~~~~~~~~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~~g~~~~ilnsd~ 681 (726)
T PRK05402 602 DLNHLYRAEPALHELDFDPEGFEWIDADDAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQAGRWREVLNTDA 681 (726)
T ss_pred HHHHHHHhChhhhccccCcCCeeEEecccCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCCCCeEEEEEcCcc
Confidence 999999999999754 4566643 4579999993 578999998642 12112357777777664
No 17
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=6e-49 Score=409.23 Aligned_cols=359 Identities=20% Similarity=0.319 Sum_probs=238.5
Q ss_pred CCceEEEeecCCCC-------CCCCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds~-------~~~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++..-+-. .+..|||+||+++ |+|||+||||+||||||++++ ++|||++.||++
T Consensus 154 ~d~iIYE~hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a 233 (688)
T TIGR02100 154 EDTIIYEAHVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFA 233 (688)
T ss_pred cccEEEEEEhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccc
Confidence 34699998852211 1247999999995 999999999999999999864 369999999999
Q ss_pred CCCCCC---CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCC
Q 014447 82 LDASKY---GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQG 158 (424)
Q Consensus 82 id~~~~---Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 158 (424)
|| ++| |+.+|||+||++||++||+||||+|+||++.++.... ...+.+- ....|+... ..+...|.
T Consensus 234 ~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~--~~~~~~~---d~~~yy~~~-~~~~~~~~---- 302 (688)
T TIGR02100 234 PE-PRYLASGQVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGP--TLSFRGI---DNASYYRLQ-PDDKRYYI---- 302 (688)
T ss_pred cC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCC--cccccCC---CCCcceEec-CCCCceec----
Confidence 99 999 6799999999999999999999999999997653211 0111110 001111000 00001111
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH---------HHHHHHHHh-cCC-CeEEee
Q 014447 159 NDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP---------SITKVYMEN-TSP-DFAVGE 227 (424)
Q Consensus 159 ~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~---------~~~~~~~~~-~~p-~~~v~E 227 (424)
......++||+++|.||++|++++++|++++||||||+|++..+.. +|++++.+. ..| +++|||
T Consensus 303 -----~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 303 -----NDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred -----CCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHhCcccCCeEEEEe
Confidence 1223346899999999999999999999889999999999998753 577777442 345 679999
Q ss_pred ecCCCC--CCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCC---cCcCC
Q 014447 228 KWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGF---IGILP 299 (424)
Q Consensus 228 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~ 299 (424)
.|.... +.... .......++..++..++..+.|+ ...+.......... ....|
T Consensus 378 ~W~~~~~~~~~~~-------------------~~~~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~~~~~ 438 (688)
T TIGR02100 378 PWDIGPGGYQVGN-------------------FPPGWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHNGRRP 438 (688)
T ss_pred eecCCCCcccccC-------------------CCCceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhccccCCCc
Confidence 996532 11000 00112345555555555554432 11222221110000 11235
Q ss_pred CcceecccCCCCCcCcccCCC-------------------------------C-------chhHHHHHHHHHcCCCeeEE
Q 014447 300 QNAVTFIDNHDTGSTQRLWPF-------------------------------P-------SDKVMLGYAYILTHPGTPCI 341 (424)
Q Consensus 300 ~~~~~f~~nHD~~r~~~~~~~-------------------------------~-------~~~~~~a~a~~l~~pG~P~i 341 (424)
...+||+++||+-++...+.+ + .+++|++++++|++||+|||
T Consensus 439 ~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~GiP~i 518 (688)
T TIGR02100 439 WASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQGTPML 518 (688)
T ss_pred CEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 678999999999553221000 0 23678999999999999999
Q ss_pred ecCCCC--------------------Cc-------chHHHHHHHHHHHHhcCCCCCCCe-------------EEEec---
Q 014447 342 FYDHFF--------------------DW-------GLKEAISKLAAVRNRNGINTASRV-------------NILAS--- 378 (424)
Q Consensus 342 yyG~~~--------------------~w-------~l~~~~~~L~~lR~~~~al~~G~~-------------~~~~~--- 378 (424)
|||||+ +| ++.+++|+||+|||++|+|+.+.+ +++..
T Consensus 519 ~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~~~~G~ 598 (688)
T TIGR02100 519 LAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEGDDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWLNADGE 598 (688)
T ss_pred eecHhhccCCCCCCCCccCCCcccccCcccccccHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEeCCCCC
Confidence 999864 35 489999999999999999977643 33321
Q ss_pred ----------CCCEEEEEEC-----------CEEEEEECCCCC-CCCcCC---CCcEEEEeC
Q 014447 379 ----------DADVYIAAIG-----------DRVIMKIGPKMD-IGNLIP---SDFKVAADG 415 (424)
Q Consensus 379 ----------~~~v~~~~r~-----------~~~lv~ln~~~~-~~~~~~---~~~~~~~~~ 415 (424)
...+++|... +.++|++|.+.+ .....| ..|+++++.
T Consensus 599 ~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~~~w~~~~dt 660 (688)
T TIGR02100 599 PMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGGGRWELVLDT 660 (688)
T ss_pred cCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCCCcEEEEecC
Confidence 2367887741 368999998643 111112 268877665
No 18
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=5e-48 Score=380.95 Aligned_cols=337 Identities=17% Similarity=0.210 Sum_probs=247.9
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
+.|++.+|. ||.+++.|||+|++++ ||++ ||++|||+|++++++++||++.||++|| |+|||++||++|+++
T Consensus 1 n~v~lity~-Ds~g~glgdl~g~l~~--yL~~-~v~~i~LlPffps~sD~GYdv~DY~~VD-P~~Gt~~Df~~L~~~--- 72 (470)
T TIGR03852 1 NKAMLITYA-DSLGKNLKELNKVLEN--YFKD-AVGGVHLLPFFPSTGDRGFAPMDYTEVD-PAFGDWSDVEALSEK--- 72 (470)
T ss_pred CCceEEEec-CCCCCChhhHHHHHHH--HHHH-hCCEEEECCCCcCCCCCCcCchhhceeC-cccCCHHHHHHHHHh---
Confidence 368899998 9999999999999999 9999 7999999999999999999999999999 999999999999987
Q ss_pred cCCEEEEeeecccCCCCCC-----------CCCcceee-----cCCCCCCCCCCCCCcccccC-----CCccCCCCCCCC
Q 014447 103 KGIKCLADMVINHRTAERK-----------DGRGIYCI-----FEGGTSDDRLDWGPSFICRG-----DKEYSDGQGNDD 161 (424)
Q Consensus 103 ~Gi~VilD~v~NH~~~~~~-----------~~~~~~~~-----~~~~~~~~~~~w~~~~~~~~-----~~~~~~~~~~~~ 161 (424)
||||+|+|+||||.+|+ ++..+|+. |+++.+ ...++...+.... ...+.++...++
T Consensus 73 --~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~-~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (470)
T TIGR03852 73 --YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRP-TQEDVDLIYKRKDRAPYQEVTFADGSTEKV 149 (470)
T ss_pred --hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCc-cccccccccCCCCCCCCCceEEcCCCCeEE
Confidence 89999999999999885 12334554 222110 0011111111111 123444556788
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-----------HH---HHHHHHH-hcCC-CeEE
Q 014447 162 TGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-----------PS---ITKVYME-NTSP-DFAV 225 (424)
Q Consensus 162 ~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-----------~~---~~~~~~~-~~~p-~~~v 225 (424)
++.|.+.+||||++||.|++++.+++++|++ .||||||+||+.++. ++ +++.+.+ ...| ++++
T Consensus 150 w~tF~~~QpDLN~~np~v~e~i~~il~fwl~-~GvdgfRLDAv~~l~K~~Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll 228 (470)
T TIGR03852 150 WNTFGEEQIDLDVTSETTKRFIRDNLENLAE-HGASIIRLDAFAYAVKKLGTNDFFVEPEIWELLDEVRDILAPTGAEIL 228 (470)
T ss_pred EccCCccccccCCCCHHHHHHHHHHHHHHHH-cCCCEEEEecchhhcccCCCCcccCChhHHHHHHHHHHHhccCCCEEE
Confidence 8899999999999999999999999999997 999999999995442 33 3444433 1234 7899
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCccee
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVT 304 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (424)
+|++...++. + ....+..++|+|++...+..++ .++...+....... |...++
T Consensus 229 ~E~~~~~~~~------------------~-~~gde~~mvY~F~lppl~l~al~~~~~~~l~~wl~~~-------p~~~~n 282 (470)
T TIGR03852 229 PEIHEHYTIQ------------------F-KIAEHGYYVYDFALPMLVLYSLYSGKTNRLADWLRKS-------PMKQFT 282 (470)
T ss_pred eHhhhhcccc------------------c-ccccceeEEccCccchhhHHHhhccCHHHHHHHHHhC-------cccceE
Confidence 9997432210 0 1013677889999987766554 66666666655432 333479
Q ss_pred cccCCCCC--------------------------cCc---------------------ccCCCCchhHHHHHHHHHcCCC
Q 014447 305 FIDNHDTG--------------------------STQ---------------------RLWPFPSDKVMLGYAYILTHPG 337 (424)
Q Consensus 305 f~~nHD~~--------------------------r~~---------------------~~~~~~~~~~~~a~a~~l~~pG 337 (424)
|++|||.= +.. +.++.+.+++.+|.|++|++||
T Consensus 283 fL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~~~r~~~a~ai~~~lpG 362 (470)
T TIGR03852 283 TLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYSALGDDDQAYLLARAIQFFAPG 362 (470)
T ss_pred EeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHHHhCCCHHHHHHHHHHHHcCCC
Confidence 99999991 000 0111245688999999999999
Q ss_pred eeEEecCCCCCc--------------------------------chHHHHHHHHHHHHhcCCCCC-CCeEEEecCCCEEE
Q 014447 338 TPCIFYDHFFDW--------------------------------GLKEAISKLAAVRNRNGINTA-SRVNILASDADVYI 384 (424)
Q Consensus 338 ~P~iyyG~~~~w--------------------------------~l~~~~~~L~~lR~~~~al~~-G~~~~~~~~~~v~~ 384 (424)
+|.||||++++- .....+.+|+++|+++||+.. |.++....++.+++
T Consensus 363 iP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~~~~~~~~~~~ 442 (470)
T TIGR03852 363 IPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSIDIETPSENQIE 442 (470)
T ss_pred CceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceEecCCCCcEEE
Confidence 999999986542 245556668999999999976 88887778889999
Q ss_pred EEE-----CCEEEEEECC
Q 014447 385 AAI-----GDRVIMKIGP 397 (424)
Q Consensus 385 ~~r-----~~~~lv~ln~ 397 (424)
+.| ++++++.+|-
T Consensus 443 ~~r~~~~~~~~~~~~~n~ 460 (470)
T TIGR03852 443 IVRTNKDGGNKAILTANL 460 (470)
T ss_pred EEEEcCCCCceEEEEEec
Confidence 987 2356666665
No 19
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=1.1e-47 Score=396.79 Aligned_cols=354 Identities=20% Similarity=0.276 Sum_probs=230.5
Q ss_pred CCceEEEeecCCC-------CCCCCCcHHHHHh--hhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWES-------SNKAGGWYNSLKN--SIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds-------~~~~~G~~~gi~~--~L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++...+- ..+..|+|.++++ +|+|||+||||+||||||++++ ++|||++.||++
T Consensus 149 ~~~vIYE~hvr~ft~~~~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa 228 (658)
T PRK03705 149 GSTVIYEAHVRGLTYLHPEIPVEIRGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFA 228 (658)
T ss_pred cccEEEEEehhhhcccCCCCCccccccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccc
Confidence 3469998885221 1234699999997 4999999999999999999853 469999999999
Q ss_pred CCCCCCCCH-----HHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCC
Q 014447 82 LDASKYGSQ-----ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDG 156 (424)
Q Consensus 82 id~~~~Gt~-----edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 156 (424)
|| ++|||. +|||+||++||++||+||||+|+|||+..+.. +.+..+.+-. ...|+ +.. .
T Consensus 229 ~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~--~~~~~~~~~d---~~~yy---~~~-------~ 292 (658)
T PRK03705 229 LD-PAYASGPETALDEFRDAVKALHKAGIEVILDVVFNHSAELDLD--GPTLSLRGID---NRSYY---WIR-------E 292 (658)
T ss_pred cc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCC--CcchhcccCC---Cccce---EEC-------C
Confidence 99 999995 79999999999999999999999999864321 1111111100 01111 001 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC--HHHHHH--HHHh-----cCC-CeEEe
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA--PSITKV--YMEN-----TSP-DFAVG 226 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--~~~~~~--~~~~-----~~p-~~~v~ 226 (424)
.+.+.. .....++||+++|.|+++|++++++|++++||||||+|++..+. ++|++. ++++ +.+ +.++|
T Consensus 293 ~g~~~~--~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 293 DGDYHN--WTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CCCcCC--CCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCcccchhhHHHHHHhhCccccceEEEE
Confidence 111111 12234689999999999999999999999999999999999886 234432 2222 234 66999
Q ss_pred eecCCCC--CCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-h--h----hhhhhhcCCCCCCcCc
Q 014447 227 EKWDSLS--YGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-E--L----WRLKDSNGKPPGFIGI 297 (424)
Q Consensus 227 E~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~--~----~~~~~~~~~~~~~~~~ 297 (424)
|.|.... +..... ......|+..++..++..+.+ + . .++.......+ ....
T Consensus 371 E~Wd~~~~~~~~g~~-------------------~~~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~-~~~~ 430 (658)
T PRK03705 371 EPWDIGPGGYQVGNF-------------------PPPFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFK-RNGR 430 (658)
T ss_pred ecccCCCChhhhcCC-------------------CcceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhcc-ccCC
Confidence 9996532 110000 011223444444444443311 1 1 11111110000 0112
Q ss_pred CCCcceecccCCCCCcCcccCCC--------------------------------------CchhHHHHHHHHHcCCCee
Q 014447 298 LPQNAVTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTP 339 (424)
Q Consensus 298 ~~~~~~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~~l~~pG~P 339 (424)
.|...+||+++||+-++.....+ ..++.|+|++++|+++|+|
T Consensus 431 ~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P 510 (658)
T PRK03705 431 LPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTP 510 (658)
T ss_pred CCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 46788999999998433211100 0135688999999999999
Q ss_pred EEecCCCC--------------------Cc-----chHHHHHHHHHHHHhcCCCCCCCe--------EEEecC-------
Q 014447 340 CIFYDHFF--------------------DW-----GLKEAISKLAAVRNRNGINTASRV--------NILASD------- 379 (424)
Q Consensus 340 ~iyyG~~~--------------------~w-----~l~~~~~~L~~lR~~~~al~~G~~--------~~~~~~------- 379 (424)
|||+|||+ +| ++.+|+|+||+|||++|+|+...+ +++..+
T Consensus 511 ~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~ 590 (658)
T PRK03705 511 MLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQADRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPLSAD 590 (658)
T ss_pred HHHhhHHhccCCCCCCCCccCCCCccccccchhhhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcCChh
Confidence 99999964 35 499999999999999999965443 343322
Q ss_pred -----CCEEEEEECCEEEEEECCCCC-CC-CcCCCCcEEEE
Q 014447 380 -----ADVYIAAIGDRVIMKIGPKMD-IG-NLIPSDFKVAA 413 (424)
Q Consensus 380 -----~~v~~~~r~~~~lv~ln~~~~-~~-~~~~~~~~~~~ 413 (424)
...+++...++++|++|...+ .. ..++..|++.+
T Consensus 591 ~w~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lp~~~w~~~~ 631 (658)
T PRK03705 591 EWQQGPKQLQILLSDRWLIAINATLEVTEIVLPEGEWHAIP 631 (658)
T ss_pred HhCCcceEEEEEECCCEEEEECCCCCCeEEECCCcceEEEE
Confidence 244666667789999998643 11 12224788774
No 20
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=7.4e-47 Score=374.89 Aligned_cols=328 Identities=16% Similarity=0.136 Sum_probs=241.1
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhh-HHHHcCCCEEEeCCCCC-CCC-CCCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIP-DLSNAGITHVWLPPPSQ-SVA-PQGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~-ylk~lGv~~I~l~Pi~~-~~~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
++.|++.+|. ||.++ |||+||+++|| ||++| |++|||+|+++ ++. ++||++.||++|| |+|||++||++|++
T Consensus 2 ~n~~~litY~-Ds~~~--GdL~gl~~kLd~yL~~l-v~~vhllPff~psp~sD~GYdv~DY~~VD-P~fGt~eDf~~L~~ 76 (495)
T PRK13840 2 KNKVQLITYA-DRLGD--GGLKSLTALLDGRLDGL-FGGVHILPFFYPIDGADAGFDPIDHTKVD-PRLGDWDDVKALGK 76 (495)
T ss_pred CCceEEEEec-cCCCC--CCHhHHHHHHHHHHHHH-hCeEEECCCccCCCCCCCCCCCcChhhcC-cccCCHHHHHHHHh
Confidence 5789999998 99874 89999999999 59999 99999999994 554 7999999999999 99999999999984
Q ss_pred HHHHcCCEEEEeeecccCCCCCCC-----------CCcceeecCCC-CC--CCCCCCCCcccccCCC-----ccCCCCCC
Q 014447 99 AFRQKGIKCLADMVINHRTAERKD-----------GRGIYCIFEGG-TS--DDRLDWGPSFICRGDK-----EYSDGQGN 159 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~-----------~~~~~~~~~~~-~~--~~~~~w~~~~~~~~~~-----~~~~~~~~ 159 (424)
||+||+|+|+||||.+|+. +..+|+.+.+. .+ ..+.+|...+...+.. .+.++...
T Consensus 77 -----giklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~ 151 (495)
T PRK13840 77 -----THDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTR 151 (495)
T ss_pred -----CCeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCce
Confidence 9999999999999999862 23455554331 11 1223343333222222 23445556
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------HHHHHHHHHhcC--CCeE
Q 014447 160 DDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------PSITKVYMENTS--PDFA 224 (424)
Q Consensus 160 ~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------~~~~~~~~~~~~--p~~~ 224 (424)
+.++.+.+.|||||++||+|+++|.+++++|++ .||||||+||+.++. .+|++++-+..+ ...+
T Consensus 152 ~~w~tF~~~QpDLN~~NP~V~~~i~~il~fwl~-~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~~~~l 230 (495)
T PRK13840 152 LVWTTFTPQQIDIDVHSAAGWEYLMSILDRFAA-SHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARARGMEV 230 (495)
T ss_pred EEeccCCcccceeCCCCHHHHHHHHHHHHHHHH-CCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhcCCEE
Confidence 677778899999999999999999999999998 999999999997543 246766632222 3557
Q ss_pred EeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcce
Q 014447 225 VGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAV 303 (424)
Q Consensus 225 v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (424)
|+|++..... ......+..++|+|++...+..++ .++...+....... |.+.+
T Consensus 231 l~Ei~~y~~~-------------------~~~~~~e~~~vYnF~Lp~ll~~aL~~~~~~~L~~~l~~~-------p~~~~ 284 (495)
T PRK13840 231 LVEIHSYYKT-------------------QIEIAKKVDRVYDFALPPLILHTLFTGDVEALAHWLEIR-------PRNAV 284 (495)
T ss_pred EEeCccccCc-------------------cccccccccEEecchhhHHHHHHHHhCCchHHHHHHHhC-------CCccE
Confidence 8998742110 000013688899999988777665 66655555544321 44457
Q ss_pred ecccCCCCCcC----------cccC--------------------------------------------CCCchhHHHHH
Q 014447 304 TFIDNHDTGST----------QRLW--------------------------------------------PFPSDKVMLGY 329 (424)
Q Consensus 304 ~f~~nHD~~r~----------~~~~--------------------------------------------~~~~~~~~~a~ 329 (424)
+|++|||.-.+ ..+. +.+.+++.+|.
T Consensus 285 n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ 364 (495)
T PRK13840 285 TVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAAR 364 (495)
T ss_pred EeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHH
Confidence 99999998443 1100 01234788999
Q ss_pred HHHHcCCCeeEEecCCCCC-----------------------c---------chHHHHHHHHHHHHhcCCCCCCCeEEEe
Q 014447 330 AYILTHPGTPCIFYDHFFD-----------------------W---------GLKEAISKLAAVRNRNGINTASRVNILA 377 (424)
Q Consensus 330 a~~l~~pG~P~iyyG~~~~-----------------------w---------~l~~~~~~L~~lR~~~~al~~G~~~~~~ 377 (424)
+++|++||||.||||++++ | .+.+.+++|+++|+++||+ .|.+++..
T Consensus 365 ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF-~~~~~~~~ 443 (495)
T PRK13840 365 AIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAF-DGAFSYAA 443 (495)
T ss_pred HHHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCccc-CceEEEec
Confidence 9999999999999998643 2 2677789999999999999 48888765
Q ss_pred cCCCEEEEEE
Q 014447 378 SDADVYIAAI 387 (424)
Q Consensus 378 ~~~~v~~~~r 387 (424)
.++..+...+
T Consensus 444 ~~~~~~~~~~ 453 (495)
T PRK13840 444 DGDTSLTLSW 453 (495)
T ss_pred CCCCeEEEEE
Confidence 6666666665
No 21
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1.6e-46 Score=386.42 Aligned_cols=355 Identities=17% Similarity=0.205 Sum_probs=235.4
Q ss_pred ceEEEeec--CCC-CCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 24 ALLFQGFN--WES-SNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 24 ~v~~~~f~--~ds-~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
-+||++-. |.. .....+++++++++ |+|||+||||+||||||++++ .+|||++++|++++ ++|||.+|||+||
T Consensus 247 ~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~-~~~G~~~dfk~lV 325 (730)
T PRK12568 247 LSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPT-ARHGSPDGFAQFV 325 (730)
T ss_pred cEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccC-cccCCHHHHHHHH
Confidence 47887663 322 22235799999998 599999999999999999987 47999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.+... +..|.+.. .|. . . +.. ......|..+ .||+.+|
T Consensus 326 ~~~H~~Gi~VIlD~V~nH~~~d~~~----l~~fdg~~-----~Ye-~---~------d~~--~g~~~~W~~~-~~N~~~p 383 (730)
T PRK12568 326 DACHRAGIGVILDWVSAHFPDDAHG----LAQFDGAA-----LYE-H---A------DPR--EGMHRDWNTL-IYNYGRP 383 (730)
T ss_pred HHHHHCCCEEEEEeccccCCccccc----cccCCCcc-----ccc-c---C------CCc--CCccCCCCCe-ecccCCH
Confidence 9999999999999999999876421 11122100 000 0 0 000 0011123332 5899999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeec
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKW 229 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~ 229 (424)
+||++|++++++|++++||||||+|+++.| +.+||+++ +++.+| +++|||..
T Consensus 384 eVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEes 463 (730)
T PRK12568 384 EVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQFPGVLTIAEES 463 (730)
T ss_pred HHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcC
Confidence 999999999999999999999999998654 13588887 566678 78999975
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc-hhhhhhhhcCCCCCCcCcCCCcceecccC
Q 014447 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG-ELWRLKDSNGKPPGFIGILPQNAVTFIDN 308 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~n 308 (424)
..-+ ....+. ..+.-+++..+++...+.....++. .+.+-........++... -...+.+..|
T Consensus 464 t~~p--~vt~p~-------------~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ltf~~~y~-~~e~fvlp~S 527 (730)
T PRK12568 464 TAWP--GVTAPI-------------SDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQLTFGLVYA-FSERFVLPLS 527 (730)
T ss_pred CCCc--cccccc-------------cCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhhhhhhhhhh-hhccEeccCC
Confidence 3211 000010 0111245555666655555544433 222221111000111110 1222457899
Q ss_pred CCCCc-----CcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC------------Cc---------chHHHHHHH
Q 014447 309 HDTGS-----TQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF------------DW---------GLKEAISKL 358 (424)
Q Consensus 309 HD~~r-----~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~------------~w---------~l~~~~~~L 358 (424)
||+.- +...+..+. +.+|.++++|++.||.|+||||+|+ +| ++..++|+|
T Consensus 528 HDEvvhgk~sl~~kmpGd~~~k~a~lR~~~~~~~~~PGkkLlFmG~Efgq~~ew~~~~~ldW~ll~~~~h~~~~~~~~dL 607 (730)
T PRK12568 528 HDEVVHGTGGLLGQMPGDDWRRFANLRAYLALMWAHPGDKLLFMGAEFGQWADWNHDQSLDWHLLDGARHRGMQQLVGDL 607 (730)
T ss_pred CcccccCchhhhhcCCCCHHHHHHHHHHHHHHHHhCCCcceeeCchhhCCcccccCCCCccccccCChhHHHHHHHHHHH
Confidence 99942 222222221 3678899999999999999999875 35 377899999
Q ss_pred HHHHHhcCCCCC-----CCeEEEec---CCCEEEEEEC------CEEEEEECCCCC------CCCcCCCCcEEEEeCCc
Q 014447 359 AAVRNRNGINTA-----SRVNILAS---DADVYIAAIG------DRVIMKIGPKMD------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 359 ~~lR~~~~al~~-----G~~~~~~~---~~~v~~~~r~------~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~ 417 (424)
++||+++|+|.. ..++|+.. +++|++|.|. ..++||+|-+.. +|-..++.|+..++.+.
T Consensus 608 n~ly~~~paL~~~d~~~~gf~wi~~~d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~~G~~~eilNsd~ 686 (730)
T PRK12568 608 NAALRRTPALYRGTHRADGFDWSVADDARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPRAGGWREILNTDS 686 (730)
T ss_pred HHHHHhChhhhcccCCCCCeEEEeCCCCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCCCCeEEEEEcCch
Confidence 999999999943 45777754 4479999992 237777776321 33333456666666543
No 22
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.5e-47 Score=414.57 Aligned_cols=320 Identities=17% Similarity=0.211 Sum_probs=215.6
Q ss_pred CceEEEeecCCC---C----CCCCCcHHHHH--hhhhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccCC
Q 014447 23 PALLFQGFNWES---S----NKAGGWYNSLK--NSIPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYDL 82 (424)
Q Consensus 23 ~~v~~~~f~~ds---~----~~~~G~~~gi~--~~L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~i 82 (424)
+.++|++..-+. . ++..|++.+|. ++|+|||+||||+||||||++++ +||||++.||++|
T Consensus 158 d~vIYE~hvr~ft~~~~~~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~ 237 (1221)
T PRK14510 158 DSPLYEMNVRGFTLRHDFFPGNLRGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAP 237 (1221)
T ss_pred cCeEEEEccchhhccCCCCCcccCcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCc
Confidence 468897664111 1 12245666666 45669999999999999999864 3689999999999
Q ss_pred CCCCCC--CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC
Q 014447 83 DASKYG--SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 83 d~~~~G--t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
| |+|| +.+|||+||++||++||+||||+|+|||+.++... ....+.+. ....|+.. .. +....+
T Consensus 238 d-p~yg~~~~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~--p~~~~~~~---d~~~yy~~---~~-----~~~~~y 303 (1221)
T PRK14510 238 D-PRLAPGGEEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYG--PTLSAYGS---DNSPYYRL---EP-----GNPKEY 303 (1221)
T ss_pred C-hhhccCcHHHHHHHHHHHHHCCCEEEEEEccccccCCCCCC--CcccccCC---CCCCceEe---cC-----CCCCcc
Confidence 9 9999 99999999999999999999999999999875421 00001100 00011100 00 000111
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC---CHHHHHHH---HHhcCC-CeE-----Eeee
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY---APSITKVY---MENTSP-DFA-----VGEK 228 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~---~~~~~~~~---~~~~~p-~~~-----v~E~ 228 (424)
..+..... .+|+++|.|++++++++++|++ +||||||+|+|..+ +.+||+.+ +++++| .++ |||.
T Consensus 304 ~~~~G~gn--~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~~~~~~l~ai~~d~~l~~~~ligE~ 380 (1221)
T PRK14510 304 ENWWGCGN--LPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFIDEFRQFLKAMDQDPVLRRLKMIAEV 380 (1221)
T ss_pred cCCCCCCC--ccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHHHHHHHHHHhCCCcCcccCcEEEec
Confidence 11111222 3577799999999999999999 99999999999999 88898876 666665 444 9999
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchh---hhhhhhcCCCCCCc---CcCCCcc
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGEL---WRLKDSNGKPPGFI---GILPQNA 302 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~ 302 (424)
|...+. .|..+.+. .....+++.++..++..+.|+. ..+........... ...+...
T Consensus 381 Wd~~~~------~~~~g~f~-----------~~~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~~~~~~~~~~ 443 (1221)
T PRK14510 381 WDDGLG------GYQYGKFP-----------QYWGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFPHRRRNFSRS 443 (1221)
T ss_pred ccCCCC------ccccCCCC-----------cceeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcCccCCCcccc
Confidence 975321 11100000 0123466677777766665431 12222111101110 1235667
Q ss_pred eecccCCCCCcCcccCCC--------------------------------------CchhHHHHHHHHHcCCCeeEEecC
Q 014447 303 VTFIDNHDTGSTQRLWPF--------------------------------------PSDKVMLGYAYILTHPGTPCIFYD 344 (424)
Q Consensus 303 ~~f~~nHD~~r~~~~~~~--------------------------------------~~~~~~~a~a~~l~~pG~P~iyyG 344 (424)
+||++|||+.|+.....+ ..+++++|++++|++||+||||||
T Consensus 444 iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s~GiP~Iy~G 523 (1221)
T PRK14510 444 INFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSFPGVPMLYYG 523 (1221)
T ss_pred eEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCcEEecc
Confidence 999999999876443221 023578999999999999999999
Q ss_pred CCCC--------------------c-----chHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014447 345 HFFD--------------------W-----GLKEAISKLAAVRNRNGINTASRVNIL 376 (424)
Q Consensus 345 ~~~~--------------------w-----~l~~~~~~L~~lR~~~~al~~G~~~~~ 376 (424)
||++ | ++++++|+|++|||++|+|+.|.+...
T Consensus 524 dE~g~tq~Gn~n~y~~~~~r~~~~W~~~~~~l~~f~k~Li~lRk~~~~L~~g~~~~~ 580 (1221)
T PRK14510 524 DEAGRSQNGNNNGYAQDNNRGTYPWGNEDEELLSFFRRLIKLRREYGVLRQGEFSSG 580 (1221)
T ss_pred hhcccccCCCCCCCCCCCccccCCcccccHHHHHHHHHHHHHHHhChhhccCccccC
Confidence 9864 4 499999999999999999999887654
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=3.4e-45 Score=393.61 Aligned_cols=354 Identities=17% Similarity=0.179 Sum_probs=228.8
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAF 100 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~a 100 (424)
-+||++.. .++.+ +|+|++++++ |+|||+||||+||||||++++ .+|||++++|++++ ++|||++|||+||++|
T Consensus 748 ~~IYEvHv-gsf~~-~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryGt~~dfk~lVd~~ 824 (1224)
T PRK14705 748 MSVYEVHL-GSWRL-GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFGHPDEFRFLVDSL 824 (1224)
T ss_pred cEEEEEEe-ccccc-CCchHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccCCHHHHHHHHHHH
Confidence 48888875 44444 5889999998 599999999999999999987 57999999999999 9999999999999999
Q ss_pred HHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q 014447 101 RQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQ 180 (424)
Q Consensus 101 H~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~ 180 (424)
|++||+||||+|+||++.+... ...|.+ ++ .+. + .+.. ...+..|.. ..||+++++||
T Consensus 825 H~~GI~VILD~V~nH~~~d~~~----l~~fdg-~~----~y~-~---------~d~~--~g~~~~Wg~-~~fn~~~~eVr 882 (1224)
T PRK14705 825 HQAGIGVLLDWVPAHFPKDSWA----LAQFDG-QP----LYE-H---------ADPA--LGEHPDWGT-LIFDFGRTEVR 882 (1224)
T ss_pred HHCCCEEEEEeccccCCcchhh----hhhcCC-Cc----ccc-c---------CCcc--cCCCCCCCC-ceecCCCHHHH
Confidence 9999999999999999765310 001211 10 000 0 0000 000112322 35999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCC------------------------CHHHHHHH---HHhcCC-CeEEeeecCCC
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGY------------------------APSITKVY---MENTSP-DFAVGEKWDSL 232 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~------------------------~~~~~~~~---~~~~~p-~~~v~E~~~~~ 232 (424)
++|++++++|++++||||||+|+++.| +.+|++++ +++..| +++|||....-
T Consensus 883 ~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~ 962 (1224)
T PRK14705 883 NFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAF 962 (1224)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCC
Confidence 999999999999999999999998776 24688887 445567 78999976531
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCCC
Q 014447 233 SYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT 311 (424)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~ 311 (424)
+ .-..+.. .+.-|++..++...++.....+ ...+.+..........+...+ ...+.+..|||+
T Consensus 963 p--~vt~p~~-------------~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ltf~~~ya~-~e~fvl~~SHDe 1026 (1224)
T PRK14705 963 P--GVTAPTS-------------HGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGTITFSLVYAF-TENFLLPISHDE 1026 (1224)
T ss_pred c--Ccccccc-------------CCCccCCcEecchhhHHHHHHhhhCcchhhcccchHHHHHHHHh-hcCEeccccccc
Confidence 1 1011100 0011233333333333222211 222211100000000000000 111345668998
Q ss_pred CcC--cc---cCCCC----chhHHHHHHHHHcCCCeeEEecCCCCC------------c---------chHHHHHHHHHH
Q 014447 312 GST--QR---LWPFP----SDKVMLGYAYILTHPGTPCIFYDHFFD------------W---------GLKEAISKLAAV 361 (424)
Q Consensus 312 ~r~--~~---~~~~~----~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w---------~l~~~~~~L~~l 361 (424)
..- .+ .+..+ ...+|.++++|++.||+|+||||+|++ | .+..++|+|++|
T Consensus 1027 vvhgk~sl~~km~Gd~~~k~a~lR~~~a~~~~~PGk~LlFMG~Efgq~~ew~~~~~LdW~ll~~~~h~~~~~~~rdLn~l 1106 (1224)
T PRK14705 1027 VVHGKGSMLRKMPGDRWQQLANLRAFLAYQWAHPGKQLIFMGTEFGQEAEWSEQHGLDWFLADIPAHRGIQLLTKDLNEL 1106 (1224)
T ss_pred ccccchhHHHhCCCcHHHHHHHHHHHHHHHHhcCCcCEEECccccCCCCCccccccCCCcccCChhhHHHHHHHHHHHHH
Confidence 532 11 11111 135788999999999999999999763 4 277799999999
Q ss_pred HHhcCCCCC-----CCeEEEe---cCCCEEEEEEC----CEEEEEECCCCC------CCCcCCCCcEEEEeCCcE
Q 014447 362 RNRNGINTA-----SRVNILA---SDADVYIAAIG----DRVIMKIGPKMD------IGNLIPSDFKVAADGTDY 418 (424)
Q Consensus 362 R~~~~al~~-----G~~~~~~---~~~~v~~~~r~----~~~lv~ln~~~~------~~~~~~~~~~~~~~~~~~ 418 (424)
|+++|+|.. ..++|+. .++.|++|.|. +.++|++|-+.. +|-...+.|+..++.+..
T Consensus 1107 y~~~paL~~~d~~~~gf~wi~~~d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~~G~y~eilnsd~~ 1181 (1224)
T PRK14705 1107 YTSTPALYQRDNEPGGFQWINGGDADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPAAGAWTEVLNTDHE 1181 (1224)
T ss_pred HhcChhhhccCCCCCceEEeecCCCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCCCCeEEEEEeCchh
Confidence 999999943 3577774 34679999992 357777776431 222223466666665543
No 24
>PLN02960 alpha-amylase
Probab=100.00 E-value=2.5e-44 Score=370.41 Aligned_cols=356 Identities=15% Similarity=0.188 Sum_probs=224.2
Q ss_pred CCceEEEeecCCCCC-CCCCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 22 SPALLFQGFNWESSN-KAGGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~-~~~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
...+||++..-.+.. .+.|+|++++++ |+|||+||||+||||||++.+ .+|||++++|++|+ ++|||.+|||+||
T Consensus 394 ~~~vIYElHvg~~~~e~~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yGtp~dfk~LV 472 (897)
T PLN02960 394 KSLRIYECHVGISGSEPKISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFGTPDDFKRLV 472 (897)
T ss_pred CCcEEEEEecccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccCCHHHHHHHH
Confidence 445899888632222 246899999976 999999999999999999876 46999999999999 9999999999999
Q ss_pred HHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCH
Q 014447 98 QAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNP 177 (424)
Q Consensus 98 ~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np 177 (424)
++||++||+||||+|+||++.++.... ..|.+ + ..+. +. .+ ..+ + ...| +...||+.+|
T Consensus 473 d~aH~~GI~VILDvV~NH~~~d~~~~L---~~FDG-~----~~~Y--f~-~~------~~g-~--~~~W-G~~~fNy~~~ 531 (897)
T PLN02960 473 DEAHGLGLLVFLDIVHSYAAADEMVGL---SLFDG-S----NDCY--FH-SG------KRG-H--HKRW-GTRMFKYGDH 531 (897)
T ss_pred HHHHHCCCEEEEEecccccCCccccch---hhcCC-C----ccce--ee-cC------CCC-c--cCCC-CCcccCCCCH
Confidence 999999999999999999998752100 01211 1 0000 00 00 000 0 1122 2356999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCeEEecccCCC-------------------------CHHHHHHH---HHhcCC-CeEEeee
Q 014447 178 RVQKELSDWMNWLKTEIGFDGWRFDFVKGY-------------------------APSITKVY---MENTSP-DFAVGEK 228 (424)
Q Consensus 178 ~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~-------------------------~~~~~~~~---~~~~~p-~~~v~E~ 228 (424)
+||++|++++++|++++||||||+|++..| +..|++.+ +++..| +++|||.
T Consensus 532 eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEd 611 (897)
T PLN02960 532 EVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIAED 611 (897)
T ss_pred HHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 999999999999999999999999999653 12355555 444466 7899997
Q ss_pred cCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcchhhh---hhhhcCCCCCCcCcCCCcceec
Q 014447 229 WDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGELWR---LKDSNGKPPGFIGILPQNAVTF 305 (424)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f 305 (424)
..+-+ . .. ..--.+.-|++-..++.....+...+.....+ .......... ....+.+.+.|
T Consensus 612 ss~~P--~-----vt--------~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~r~~~~~~l~~s~~~-~~~~~~~~v~Y 675 (897)
T PLN02960 612 ATFYP--G-----LC--------EPTSQGGLGFDYYVNLSPSEMWLSLLENVPDQEWSMSKIVSTLVK-NKENADKMLSY 675 (897)
T ss_pred CCCCC--C-----cc--------ccCCCCCCCcccccCCCcHHHHHHHHHhCcCCCCChhccEeeecc-CcCCcceEEEE
Confidence 64311 0 00 00000001222223333333333333221100 0000000000 01124566899
Q ss_pred ccCCCCCcC-----cccCC---------CCch--------hHHHHHHHHHcCCCeeEEecCCCC----------------
Q 014447 306 IDNHDTGST-----QRLWP---------FPSD--------KVMLGYAYILTHPGTPCIFYDHFF---------------- 347 (424)
Q Consensus 306 ~~nHD~~r~-----~~~~~---------~~~~--------~~~~a~a~~l~~pG~P~iyyG~~~---------------- 347 (424)
.+|||+.-. ...+. .... .+..+++++++ ||+|++|||+|+
T Consensus 676 ~EnHDQVv~Gkrsl~~rL~g~~~~k~~~~~~~~lRa~al~~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~t 754 (897)
T PLN02960 676 AENHNQSISGGKSFAEILLGKNKESSPAVKELLLRGVSLHKMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFS 754 (897)
T ss_pred ecCcCccccCcccHHHHCCCchhhhhcccChhhhhhhhHHHHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccc
Confidence 999999221 11111 1100 11223555554 899999999863
Q ss_pred ------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEE--ecCCCEEEEEECCEEEEEECCCCC-------CCC
Q 014447 348 ------DW---------GLKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIAAIGDRVIMKIGPKMD-------IGN 403 (424)
Q Consensus 348 ------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~--~~~~~v~~~~r~~~~lv~ln~~~~-------~~~ 403 (424)
+| .+..++|.|++||+++|+|..|..... ..++.|++|.| +.++||+|.+.. +|-
T Consensus 755 f~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~~~i~~~d~~~~Viaf~R-~~llvV~NFsp~~~~~~Y~vgv 833 (897)
T PLN02960 755 FSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGLPNIHHVNDTSMVISFTR-GPLLFAFNFHPTNSYEEYEVGV 833 (897)
T ss_pred cccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCcceeeeecCCCCEEEEEe-CCeEEEEeCCCCCcCcCceECC
Confidence 35 377899999999999999987655443 33557999999 468888888542 111
Q ss_pred cCCCCcEEEEeCCc
Q 014447 404 LIPSDFKVAADGTD 417 (424)
Q Consensus 404 ~~~~~~~~~~~~~~ 417 (424)
..++.|+..++.+.
T Consensus 834 P~~G~y~eilNSD~ 847 (897)
T PLN02960 834 EEAGEYELILNTDE 847 (897)
T ss_pred CCCCcEEEEEeCch
Confidence 22346777666543
No 25
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=5.3e-44 Score=382.26 Aligned_cols=345 Identities=20% Similarity=0.337 Sum_probs=233.6
Q ss_pred CceEEEeecCCCCCC---------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-------------------C-CCCC
Q 014447 23 PALLFQGFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-------------------V-APQG 73 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~---------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-------------------~-~~~g 73 (424)
+.|||++...+...+ ..|||.|++++|+|||+||||+||||||++. . .+||
T Consensus 451 d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWG 530 (1111)
T TIGR02102 451 DAIIYEAHVRDFTSDPAIAGDLTAQFGTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWG 530 (1111)
T ss_pred ceEEEEEechhhCcCCCCCcccccCCcCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccC
Confidence 459998885322211 3599999999999999999999999999851 1 2499
Q ss_pred CCcccccCCCCCCCCC--------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcc
Q 014447 74 YMPGRLYDLDASKYGS--------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSF 145 (424)
Q Consensus 74 Y~~~d~~~id~~~~Gt--------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 145 (424)
|+|.+|++++ ++||+ .+|||+||++||++||+||||+|+|||+..+. |.+-. +.|+..
T Consensus 531 Ydp~~yfape-~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~~~~--------f~~~~----p~Yy~~- 596 (1111)
T TIGR02102 531 YDPQNYFALS-GMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAKVYI--------FEDLE----PNYYHF- 596 (1111)
T ss_pred CCcCcCcccc-cccccCCcCccccHHHHHHHHHHHHHCCCEEEEeccccccccccc--------ccccC----CCceEe-
Confidence 9999999999 99998 58999999999999999999999999987653 22110 111100
Q ss_pred cccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-
Q 014447 146 ICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP- 221 (424)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p- 221 (424)
. +..+.... . .+..+++.++|.||++|++++++|++++||||||||.+.+++.++++.+ +++..|
T Consensus 597 -~-------~~~G~~~~--~-~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~dP~ 665 (1111)
T TIGR02102 597 -M-------DADGTPRT--S-FGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPN 665 (1111)
T ss_pred -e-------CCCCCccc--c-cCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhCcC
Confidence 0 00011000 0 1134689999999999999999999999999999999999999888877 445677
Q ss_pred CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHh---------cch---hhhhhhhcC
Q 014447 222 DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAV---------QGE---LWRLKDSNG 289 (424)
Q Consensus 222 ~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~---------~~~---~~~~~~~~~ 289 (424)
++++||.|.... +...+.. ......++.... ....|+..++..++..+ +|. +..+.....
T Consensus 666 ~~liGE~W~~~~----g~~~~~~---~~~~~~~~~~~~-~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~ 737 (1111)
T TIGR02102 666 IIMIGEGWRTYA----GDEGDPV---QAADQDWMKYTE-TVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIK 737 (1111)
T ss_pred EEEEEecccccC----CCCcccc---cccchhhHhcCC-cccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhc
Confidence 779999996411 0000000 011112332221 24456666665555321 121 122222221
Q ss_pred CC-CCCcCcCCCcceecccCCCCCcCcccCCC--------C------chhHHHHHHHHHcCCCeeEEecCCCC-------
Q 014447 290 KP-PGFIGILPQNAVTFIDNHDTGSTQRLWPF--------P------SDKVMLGYAYILTHPGTPCIFYDHFF------- 347 (424)
Q Consensus 290 ~~-~~~~~~~~~~~~~f~~nHD~~r~~~~~~~--------~------~~~~~~a~a~~l~~pG~P~iyyG~~~------- 347 (424)
.. .......|.+.++|+++||+.++...... . ..+.|+|.+++|+.+|+|+|++|||+
T Consensus 738 g~~~~~~~~~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~~~~~~~r~rla~~llllSQGiPfi~aGqEf~RTK~gn 817 (1111)
T TIGR02102 738 AQPHNFEADSPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAENQEEIHRRIRLGNLMVLTSQGTAFIHSGQEYGRTKQFR 817 (1111)
T ss_pred CCccccccCCcccEEEEEecCCCCchHhhhhhccccCcccccchHHHHHHHHHHHHHHHHhCcHhhhhcchhhhcccCCC
Confidence 11 11112357889999999999876322211 0 13778999999999999999999843
Q ss_pred -----------------------------------------------Cc-------------chHHHHHHHHHHHHhcCC
Q 014447 348 -----------------------------------------------DW-------------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 348 -----------------------------------------------~w-------------~l~~~~~~L~~lR~~~~a 367 (424)
+| ++.+++|.||+||+++|+
T Consensus 818 nn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~~y~~~LI~lRk~~~~ 897 (1111)
T TIGR02102 818 NPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTRDYTAGLIELRRSTDA 897 (1111)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHHHHHHHHHHHHhcCcc
Confidence 12 258899999999999999
Q ss_pred CCCCCe-------EEEecC--------CCEEEEEE----CCEEEEEECCCCC
Q 014447 368 NTASRV-------NILASD--------ADVYIAAI----GDRVIMKIGPKMD 400 (424)
Q Consensus 368 l~~G~~-------~~~~~~--------~~v~~~~r----~~~~lv~ln~~~~ 400 (424)
|+.+.. .++... +.+++|.. ++.++|++|.+.+
T Consensus 898 fr~~~~~~i~~~v~~~~~~g~~~~~~~~~~ia~~~~~~~~~~~~V~~Na~~~ 949 (1111)
T TIGR02102 898 FRLGSKALVDRKVTLITIPGQNEIEEEDLVVAYQIVATNGDIYAVFVNADDK 949 (1111)
T ss_pred ccccchhhhcCcEEEECCCCCcccccCCcEEEEEEecCCCCeEEEEECCCCC
Confidence 976654 233222 46788885 3578899998643
No 26
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=3e-42 Score=355.56 Aligned_cols=352 Identities=18% Similarity=0.254 Sum_probs=226.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHh-hhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKN-SIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~-~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
-+||++..-.+..+ ..|++.++++ +|+|||+||||+||||||++.+ .+|||++++|++++ ++|||.+|||+||++
T Consensus 230 ~~IYE~Hvg~~~~~~~~gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~-~~~Gtp~dlk~LVd~ 308 (758)
T PLN02447 230 LRIYEAHVGMSSEEPKVNSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVS-SRSGTPEDLKYLIDK 308 (758)
T ss_pred CEEEEEeCCcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccc-cccCCHHHHHHHHHH
Confidence 37887775222222 3589999865 6999999999999999999987 47999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 014447 100 FRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v 179 (424)
||++||+||||+|+||++.++.. + ...|.+ ++ ..|+.. ....+ ...| +...+|+++++|
T Consensus 309 aH~~GI~VilDvV~nH~~~~~~~--g-l~~fDg-~~---~~Yf~~-----------~~~g~--~~~w-~~~~~N~~~~eV 367 (758)
T PLN02447 309 AHSLGLRVLMDVVHSHASKNTLD--G-LNGFDG-TD---GSYFHS-----------GPRGY--HWLW-DSRLFNYGNWEV 367 (758)
T ss_pred HHHCCCEEEEEeccccccccccc--c-ccccCC-CC---cccccc-----------CCCCC--cCcC-CCceecCCCHHH
Confidence 99999999999999999976421 0 011211 10 111110 00000 0112 233599999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEecccCCCC--------------------------HHHHHHH---HHhcCC-CeEEeeec
Q 014447 180 QKELSDWMNWLKTEIGFDGWRFDFVKGYA--------------------------PSITKVY---MENTSP-DFAVGEKW 229 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~D~a~~~~--------------------------~~~~~~~---~~~~~p-~~~v~E~~ 229 (424)
+++|++++++|++++||||||+|++++|- ..|++.+ +++..| +++|||..
T Consensus 368 r~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~ 447 (758)
T PLN02447 368 LRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDV 447 (758)
T ss_pred HHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999998761 1245444 555677 78999977
Q ss_pred CCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch---hhhhhhhcCCCCCCcC-cCCCcceec
Q 014447 230 DSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE---LWRLKDSNGKPPGFIG-ILPQNAVTF 305 (424)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~f 305 (424)
.+-+ ... ...-.+.-|++..++........+.++.. .+...... ..+.. .+..+.+.+
T Consensus 448 s~~p-------~l~--------~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~~~~~~~l~---~sl~~r~~~E~~I~y 509 (758)
T PLN02447 448 SGMP-------TLC--------RPVQEGGVGFDYRLAMAIPDKWIELLKEKRDEDWSMGDIV---HTLTNRRYTEKCVAY 509 (758)
T ss_pred CCCC-------Ccc--------ccCCCCcCCcceEECCccchHHHHHHhhCCCcccCHHHHH---HHHhcccccCceEec
Confidence 5311 000 00001011222223333333333333221 11110000 00111 123455789
Q ss_pred ccCCCCCcCc--cc----C------CCCc--------h----hHHHHHHHHHcCCCe-eEEecCCCCC------------
Q 014447 306 IDNHDTGSTQ--RL----W------PFPS--------D----KVMLGYAYILTHPGT-PCIFYDHFFD------------ 348 (424)
Q Consensus 306 ~~nHD~~r~~--~~----~------~~~~--------~----~~~~a~a~~l~~pG~-P~iyyG~~~~------------ 348 (424)
.+|||+.... ++ + .++. . ..++..++++++||. +++|||+|++
T Consensus 510 ~eSHDevv~Gkksl~~~l~d~~my~~m~~~~~~~~~~~R~~~lhkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n 589 (758)
T PLN02447 510 AESHDQALVGDKTIAFWLMDKEMYDGMSTLTPATPVVDRGIALHKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGN 589 (758)
T ss_pred cCCcCeeecCcchhHhhhcchhhhhcCCCChhhhhhHHHHHHHHHHHHHHHHhCCCCcceeecccccCCchhccCccccc
Confidence 9999997652 11 1 1111 1 124566789999999 7999998642
Q ss_pred ----------cc-----------hHHHHHHHHHHHHhcCCCCCCCeEEE---ecCCCEEEEEECCEEEEEECCCCC----
Q 014447 349 ----------WG-----------LKEAISKLAAVRNRNGINTASRVNIL---ASDADVYIAAIGDRVIMKIGPKMD---- 400 (424)
Q Consensus 349 ----------w~-----------l~~~~~~L~~lR~~~~al~~G~~~~~---~~~~~v~~~~r~~~~lv~ln~~~~---- 400 (424)
|+ +.+|+|.|++|++++++|..|. .++ ..++.|++|.|. .+|+|+|-+..
T Consensus 590 ~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~~~-~~i~~~d~~~~Viaf~R~-~ll~V~NF~p~~s~~ 667 (758)
T PLN02447 590 GWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTSEH-QYVSRKDEGDKVIVFERG-DLVFVFNFHPTNSYS 667 (758)
T ss_pred ccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccCCC-ceeeeecCCCCEEEEEeC-CeEEEEeCCCCCCCC
Confidence 42 5679999999999999997654 443 346689999996 47888887431
Q ss_pred ---CCCcCCCCcEEEEeCCc
Q 014447 401 ---IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~ 417 (424)
+|-..++.|++.++.+.
T Consensus 668 ~Y~igvp~~G~y~~ilnSD~ 687 (758)
T PLN02447 668 DYRVGCDKPGKYKIVLDSDA 687 (758)
T ss_pred CcEECCCCCCeEEEEECCCc
Confidence 33334556777666553
No 27
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-42 Score=357.68 Aligned_cols=364 Identities=21% Similarity=0.318 Sum_probs=229.6
Q ss_pred ceEEEeec---CCCCC------CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHH
Q 014447 24 ALLFQGFN---WESSN------KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 24 ~v~~~~f~---~ds~~------~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl 93 (424)
.|+||+|. -++.+ +++|||+||+++|||||+|||++|||+||+++ ..+|||++.||++|| |++||++||
T Consensus 1 ~viyqi~~~~f~d~~~~~~~~~~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id-~~~Gt~~d~ 79 (505)
T COG0366 1 AVIYQIYPDRFADSNGSNGPDYDGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVD-PHFGTEEDF 79 (505)
T ss_pred CcEEEEechhhcCCCCCCccCCCCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcC-cccCCHHHH
Confidence 37888885 14444 45699999999999999999999999999999 579999999999999 999999999
Q ss_pred HHHHHHHHHcCCEEEEeeecccCCCCCCC----------CC-cceeecCCCCC--CCCCCCCCcccccCCCccCCCCCCC
Q 014447 94 KSLIQAFRQKGIKCLADMVINHRTAERKD----------GR-GIYCIFEGGTS--DDRLDWGPSFICRGDKEYSDGQGND 160 (424)
Q Consensus 94 ~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----------~~-~~~~~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~ 160 (424)
++||++||++||+||+|+|+||++.+|+. .. .+|+.|..... ..+.+|...+. .+.+.+ ...+.+
T Consensus 80 ~~li~~~H~~gi~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 157 (505)
T COG0366 80 KELVEEAHKRGIKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFG-GDAWTW-GNTGEY 157 (505)
T ss_pred HHHHHHHHHCCCEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCcccCCCCCcchhhcC-CCCCCc-CCCCce
Confidence 99999999999999999999999999851 11 24444443211 12233322221 111121 234567
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCH-----------HHHHHHH---HhcCC-CeEE
Q 014447 161 DTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAP-----------SITKVYM---ENTSP-DFAV 225 (424)
Q Consensus 161 ~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~-----------~~~~~~~---~~~~p-~~~v 225 (424)
..+.+...+||||+.||+||+++.+++++|++ +||||||+|+++++.. .++..+. +...+ ++..
T Consensus 158 ~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~~-~gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (505)
T COG0366 158 YLHLFSSEQPDLNWENPEVREELLDVVKFWLD-KGVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIY 236 (505)
T ss_pred EEEecCCCCCCcCCCCHHHHHHHHHHHHHHHH-cCCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhc
Confidence 78889999999999999999999999999999 9999999999999987 5555552 22222 2222
Q ss_pred eeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHH-HhcchhhhhhhhcCCCCCCcCcCCCccee
Q 014447 226 GEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQA-AVQGELWRLKDSNGKPPGFIGILPQNAVT 304 (424)
Q Consensus 226 ~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (424)
+|.+............... .............+++.....-.. ........+.......+............
T Consensus 237 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T COG0366 237 GEAITDVGEAPGAVKEDFA-------DNTSFTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNLNDGWNNL 309 (505)
T ss_pred Ccceeeeeccccccchhhh-------hccchhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhccccCchhh
Confidence 2322211100000000000 000000011222233322111000 00000000000000000000000111234
Q ss_pred cccCCCCCcCcccCCCCc----hhHHHHHHHHHcCCCeeEEecCCCC---------------------------------
Q 014447 305 FIDNHDTGSTQRLWPFPS----DKVMLGYAYILTHPGTPCIFYDHFF--------------------------------- 347 (424)
Q Consensus 305 f~~nHD~~r~~~~~~~~~----~~~~~a~a~~l~~pG~P~iyyG~~~--------------------------------- 347 (424)
|.+|||.+|..+...... ...+++.++++++||+|+||||+|.
T Consensus 310 ~~~~hD~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 389 (505)
T COG0366 310 FLSNHDQPRLLSRFGDDVGGRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSRDGCRTPM 389 (505)
T ss_pred hhhhcCccceeeeccCCccchHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccccCCCCCc
Confidence 799999999988765444 5678888889999999999999732
Q ss_pred Cc--------------------------------------chHHHHHHHHHHHHhc-CCCCCCCeEEEec--CCCEEEEE
Q 014447 348 DW--------------------------------------GLKEAISKLAAVRNRN-GINTASRVNILAS--DADVYIAA 386 (424)
Q Consensus 348 ~w--------------------------------------~l~~~~~~L~~lR~~~-~al~~G~~~~~~~--~~~v~~~~ 386 (424)
.| +++.++++|+++|+.+ +.+..|....... +..+++|.
T Consensus 390 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 469 (505)
T COG0366 390 PWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLLADDDPSLLAFL 469 (505)
T ss_pred CCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceecCCCCceEEEEe
Confidence 12 2678899999999998 4456674444333 33689999
Q ss_pred EC--CE-EEEEECCC
Q 014447 387 IG--DR-VIMKIGPK 398 (424)
Q Consensus 387 r~--~~-~lv~ln~~ 398 (424)
|. ++ ++|++|.+
T Consensus 470 ~~~~~~~~~~~~n~~ 484 (505)
T COG0366 470 RESGGETLLVVNNLS 484 (505)
T ss_pred cccCCceEEEEEcCC
Confidence 83 23 55555553
No 28
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-43 Score=354.88 Aligned_cols=375 Identities=26% Similarity=0.399 Sum_probs=260.2
Q ss_pred cCCCCCCceEEEeec---CCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHH
Q 014447 17 FLPFTSPALLFQGFN---WESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~---~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~ed 92 (424)
.|+|++.+++||++. -+|.+++.||++||++||+|||++||++|||+||.+++. ++||.+.||+.|+ |+|||+||
T Consensus 11 ~~~~W~~~~~YQI~~~sF~~s~~d~~G~~~GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~-p~fGt~ed 89 (545)
T KOG0471|consen 11 SPDWWKTESIYQIYPDSFADSDGDGVGDLKGITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLR-PRFGTEED 89 (545)
T ss_pred CchhhhcCceeEEeccccccccCCCccccccchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhc-ccccHHHH
Confidence 689999999999885 244556789999999999999999999999999999986 5999999999999 99999999
Q ss_pred HHHHHHHHHHcCCEEEEeeecccCCCCCCC------CC---cceeecCCC------CCCCCCCCCCcccccCCCccCCCC
Q 014447 93 LKSLIQAFRQKGIKCLADMVINHRTAERKD------GR---GIYCIFEGG------TSDDRLDWGPSFICRGDKEYSDGQ 157 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~------~~---~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~ 157 (424)
|++||+++|++||+||+|+|+||++.+|+. .+ .+|+++.++ +...+.+|.+.+.. ..++|....
T Consensus 90 f~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~-s~~~~~e~~ 168 (545)
T KOG0471|consen 90 FKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGG-SAWPFDEGR 168 (545)
T ss_pred HHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhcc-ccCcccccc
Confidence 999999999999999999999999977651 11 134444443 23446677766543 334555667
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCeEEeeecCCCCCCC
Q 014447 158 GNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDFAVGEKWDSLSYGP 236 (424)
Q Consensus 158 ~~~~~~~~~~~~~dln~~np~v~~~l~~~~~-~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~~v~E~~~~~~~~~ 236 (424)
.++..+.+...+||+|++||+|++.+.+.++ +|.+ .||||||+|+++++..+++. ..-...|++-+||.+.+..+..
T Consensus 169 ~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~~~-~gvdGfRiD~v~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~ 246 (545)
T KOG0471|consen 169 QKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFWLE-KGVDGFRIDAVKGYAGENFK-NMWPDEPVFDVGEKLQDDNYVA 246 (545)
T ss_pred cceeccchhhcCCCCCCCCHHHHHHHHHHHHHHHhh-cCCCeEEEEccccccccccc-ccccCCCcccceeEecCcchhh
Confidence 7888899999999999999999999999999 6776 99999999999999988877 4344466788999987765433
Q ss_pred CCCCCCCCCCch--hHHHHHHHhcCCceeeecccchHHHHHHhcc---hhhhhhhhcCCCC----------------CCc
Q 014447 237 DGKPDANQDGHR--GALKDWVQAAGGAVAAFDFTTKGILQAAVQG---ELWRLKDSNGKPP----------------GFI 295 (424)
Q Consensus 237 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~---~~~~~~~~~~~~~----------------~~~ 295 (424)
....+|..+-.. ..+..+..........+.+.....+...... .+.++........ ...
T Consensus 247 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~ 326 (545)
T KOG0471|consen 247 YQYNDYGEDQPEIHDLIRAERFLLDDYSAAFGFGDKRILQTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVA 326 (545)
T ss_pred cccccccccchhhhhHHHHHHhhhhhhhhcccccchhhhhhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccch
Confidence 223333322111 1111111111123333333222111111111 1111111110000 000
Q ss_pred CcCC--------------CcceecccCCCCCcCcccCCCCchhHHHHHHHHHcCCCeeEEecCCCC--------------
Q 014447 296 GILP--------------QNAVTFIDNHDTGSTQRLWPFPSDKVMLGYAYILTHPGTPCIFYDHFF-------------- 347 (424)
Q Consensus 296 ~~~~--------------~~~~~f~~nHD~~r~~~~~~~~~~~~~~a~a~~l~~pG~P~iyyG~~~-------------- 347 (424)
.... ..+...+.|||..|..+.++ .+..++..++++++||+|++|+|+|+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~a~W~~~~~~~~r~~sr~~--~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~ 404 (545)
T KOG0471|consen 327 SIYKEVEVDWLSNHDTENRWAHWVLGNHDQARLASRFG--SDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGED 404 (545)
T ss_pred HHHHHHHHHHHhcCCccCCceeeeecCccchhhHHHhc--chhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcC
Confidence 0001 11233556666776666554 23367778899999999999999842
Q ss_pred ----------Cc-----------------------------------chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCE
Q 014447 348 ----------DW-----------------------------------GLKEAISKLAAVRNRNGINTASRVNILASDADV 382 (424)
Q Consensus 348 ----------~w-----------------------------------~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v 382 (424)
.| ++..+++++..+|+.+..++.|....-..++.+
T Consensus 405 ~~~~~~rt~~~w~~~~~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~~~~~~i 484 (545)
T KOG0471|consen 405 PKLMQSRTPMQWDESTNAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLFAATPGL 484 (545)
T ss_pred cHHhccCCccccccccccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeeecCCCce
Confidence 23 378899999999999877888888888888999
Q ss_pred EEEEE---CCEEEEEECC
Q 014447 383 YIAAI---GDRVIMKIGP 397 (424)
Q Consensus 383 ~~~~r---~~~~lv~ln~ 397 (424)
++|.| ....+++++|
T Consensus 485 f~~~r~~~~~~~~~~~~~ 502 (545)
T KOG0471|consen 485 FSFSRNWDGNERFIAVLN 502 (545)
T ss_pred EEEEeccCCCceEEEEEe
Confidence 99998 3344444444
No 29
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=1.3e-40 Score=331.30 Aligned_cols=352 Identities=15% Similarity=0.168 Sum_probs=249.8
Q ss_pred ceEEEeecCCC-CCCCCCcHHHHH---hhhhHHHHcCCCEEEeCCCCCC---------CC-CCCCCcccccCCCCCCCCC
Q 014447 24 ALLFQGFNWES-SNKAGGWYNSLK---NSIPDLSNAGITHVWLPPPSQS---------VA-PQGYMPGRLYDLDASKYGS 89 (424)
Q Consensus 24 ~v~~~~f~~ds-~~~~~G~~~gi~---~~L~ylk~lGv~~I~l~Pi~~~---------~~-~~gY~~~d~~~id~~~~Gt 89 (424)
.|++.+++ .| ..+.|..+-+.. .-.+||++|||++|||+|++++ |. +.||+++| +.|| |.|||
T Consensus 52 ~~W~~~~P-~s~i~~~~~s~~~~L~~~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d-~~Id-p~~GT 128 (688)
T TIGR02455 52 SVWFTAYP-AAIIAPEGCSVLEALADDALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRIS-FDID-PLLGS 128 (688)
T ss_pred CeeEEecc-hhhcCCCCCcHHHHhcChHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCccc-CccC-cccCC
Confidence 58888887 33 223333443333 2468999999999999999999 65 68999999 5999 99999
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCC--------CCCccee-----------ecCCCCCC--------------
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERK--------DGRGIYC-----------IFEGGTSD-------------- 136 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~--------~~~~~~~-----------~~~~~~~~-------------- 136 (424)
++||++|+++||++|||||+|+|+||||..|+ .+...|+ .+++..+.
T Consensus 129 ~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~ghdF~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L 208 (688)
T TIGR02455 129 EEELIQLSRMAAAHNAITIDDIIPAHTGKGADFRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDEL 208 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcchHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHH
Confidence 99999999999999999999999999999885 1122233 44432111
Q ss_pred ---C---CCCCCCccccc----CCCccC--------CCCCCCCCCCCCCCCCCCCCCCHH--HHHHHH-HHHHHHHHhcC
Q 014447 137 ---D---RLDWGPSFICR----GDKEYS--------DGQGNDDTGEDFQPAPDIDHLNPR--VQKELS-DWMNWLKTEIG 195 (424)
Q Consensus 137 ---~---~~~w~~~~~~~----~~~~~~--------~~~~~~~~~~~~~~~~dln~~np~--v~~~l~-~~~~~w~~~~g 195 (424)
. ...-.-.|+.. ..+.|. .....++++.|+.++|+|||.||. ||+.|+ +++.+|.+ +|
T Consensus 209 ~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~-lG 287 (688)
T TIGR02455 209 KAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC-LG 287 (688)
T ss_pred hhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH-hc
Confidence 0 00000011101 123333 234567778899999999999999 999999 89999998 99
Q ss_pred CCeEEecccCCCC-------------HHHH---HHHHH--hcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHH
Q 014447 196 FDGWRFDFVKGYA-------------PSIT---KVYME--NTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQ 256 (424)
Q Consensus 196 vDGfR~D~a~~~~-------------~~~~---~~~~~--~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (424)
++|||+||+..+- .++. +.++. ..++ .++++|.... .+.+..|..
T Consensus 288 ~~GfRLDAvpfLg~e~~~~~~~~~e~h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~----------------~~d~~~~~g 351 (688)
T TIGR02455 288 ARGLRLDANGFLGVERRAEGTAWSEGHPLSLTGNQLIAGAIRKAGGFSFQELNLT----------------IDDIAAMSH 351 (688)
T ss_pred cccceeccccceeeecCCCCCCCCccCHHHHHHHHHHHHhhhcCCeeEeeeccCC----------------HHHHHHHhC
Confidence 9999999987662 2343 33444 3456 8899998653 678888887
Q ss_pred hcCCceeeecccchHHHHHHh-cchhhhhhhhcCCCCCCcCcCCCcceecccCCCC---C--------------------
Q 014447 257 AAGGAVAAFDFTTKGILQAAV-QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDT---G-------------------- 312 (424)
Q Consensus 257 ~~~~~~~~~df~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~---~-------------------- 312 (424)
++++..|||..+..+..++ .|+...+.......+.. +..+.+.++|+.|||+ +
T Consensus 352 --~~~dl~~dF~t~p~~~~AL~tgda~pLr~~L~~~~~~-gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~ 428 (688)
T TIGR02455 352 --GGADLSYDFITRPAYHHALLTGDTEFLRLMLKEMHAF-GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTL 428 (688)
T ss_pred --CCcceeecccccHHHHHHHHcCCHHHHHHHHHhhhcC-CCCchhhhhhccCccccchhhhhhcccccccccccccccC
Confidence 4899999999988877765 56544444333222221 1124567899999999 0
Q ss_pred ---------------cC---------------------------------cccCCCCchhHHHHHHHHHc----CCCeeE
Q 014447 313 ---------------ST---------------------------------QRLWPFPSDKVMLGYAYILT----HPGTPC 340 (424)
Q Consensus 313 ---------------r~---------------------------------~~~~~~~~~~~~~a~a~~l~----~pG~P~ 340 (424)
|. ..+...++++++++++++++ +||+|+
T Consensus 429 ~g~~l~e~~R~~m~~~~a~d~~p~~m~~~~~gi~~t~a~~ia~~~GIRrLap~~~~d~~~I~~~h~LL~s~na~lPG~p~ 508 (688)
T TIGR02455 429 PGGHLREHIREEIYERLSGEHAPYNLKFVTNGIACTTASLIAAALGIRDLDAIGPADIELIKKLHILLVMFNAMQPGVFA 508 (688)
T ss_pred CccccCHHHHHHHHHHhcCCCccccceEEeccccccchhhhhhhcCCccchhhCCCCHHHHHHHHHHHHHhhccCCCceE
Confidence 00 00111234568899999999 999999
Q ss_pred EecC--------------CCCC-----c----------------------------------------chHHHHHHHHHH
Q 014447 341 IFYD--------------HFFD-----W----------------------------------------GLKEAISKLAAV 361 (424)
Q Consensus 341 iyyG--------------~~~~-----w----------------------------------------~l~~~~~~L~~l 361 (424)
|||| +|++ | ++...+++++++
T Consensus 509 L~ygdl~GalpL~~~~v~deigmGD~~wl~rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~v 588 (688)
T TIGR02455 509 LSGWDLVGALPLAAEAVAELMGDGDTRWIHRGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAV 588 (688)
T ss_pred eecccccccccccccchhhhhccCccccccCCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHH
Confidence 9999 4331 2 488999999999
Q ss_pred HHhcCCCCCCCeEEEec-CCCEEEEEE---C-CEEEEEECCC
Q 014447 362 RNRNGINTASRVNILAS-DADVYIAAI---G-DRVIMKIGPK 398 (424)
Q Consensus 362 R~~~~al~~G~~~~~~~-~~~v~~~~r---~-~~~lv~ln~~ 398 (424)
|++++++..|.+..+.. +..++++.+ + +..+++++|+
T Consensus 589 R~~~~i~~~~~~~~~~~~~~gvLa~v~~l~~~~~~~L~v~Nf 630 (688)
T TIGR02455 589 RQAYDIAASKQILIPDVQAPGLLVMVHELPAGKGIQITALNF 630 (688)
T ss_pred HHhCCcccCceeeecCCCCCcEEEEEEEcCCCCceEEEeecc
Confidence 99999999999988765 568999987 2 2445555543
No 30
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=1e-38 Score=335.71 Aligned_cols=188 Identities=20% Similarity=0.328 Sum_probs=140.1
Q ss_pred ceEEEeecCCC-----C--CCCCCcHHHHHhh-------hhHHHHcCCCEEEeCCCCCCC--------------------
Q 014447 24 ALLFQGFNWES-----S--NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV-------------------- 69 (424)
Q Consensus 24 ~v~~~~f~~ds-----~--~~~~G~~~gi~~~-------L~ylk~lGv~~I~l~Pi~~~~-------------------- 69 (424)
.+||++=..|- . ....|+|.+++|+ |.|||+||||+|+|||+++..
T Consensus 253 ~iIYElHVRDFS~~d~s~~~~~rGtYla~tE~~t~gi~hLk~L~eLGVThVeLLPv~df~tvdE~~~~~~~~~~~~~~l~ 332 (898)
T TIGR02103 253 MVLYELHIRDFSANDESVPAELRGKYLAFTAADSAGVQHLKKLADAGVTHLHLLPTFDIATVNEEKEKVADIQQPFSKLC 332 (898)
T ss_pred cEEEEEeccccccCCCCCCcCcCceeeehhccchhhhHHHHHHHhCCCcEEEEcChhhcCccccccccccccccchhhhh
Confidence 48886543221 1 1357999999886 667778899999999998631
Q ss_pred --------------------------------------------CCCCCCcccccCCCCCCCCC-------HHHHHHHHH
Q 014447 70 --------------------------------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQ 98 (424)
Q Consensus 70 --------------------------------------------~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~ 98 (424)
.+|||+|..|+.++ ..|+| .+|||+||+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~~d~yNWGYDP~~y~aPe-gSYatdp~g~~Ri~Efk~mV~ 411 (898)
T TIGR02103 333 ELNPDSKSSEFAGYCDSGSQLKQNDSKDNPEVQALNTLVRNLDSYNWGYDPFHYTVPE-GSYATDPEGPARIKEFREMVQ 411 (898)
T ss_pred ccccccccccccccccccccccccccccchhhhhhhhhhccCCCCCCCCCCcccCCcC-hhhccCCCCchHHHHHHHHHH
Confidence 16999999999999 99998 379999999
Q ss_pred HHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHH
Q 014447 99 AFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPR 178 (424)
Q Consensus 99 ~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~ 178 (424)
+||++||+||||+|+|||+.+++..... +..- .+.|+.. .+ ..+.+. ...+..+++.++|.
T Consensus 412 alH~~Gi~VIlDVVyNHt~~~g~~~~s~---ld~~----~P~YY~r---~~------~~G~~~---n~~~~~d~a~e~~~ 472 (898)
T TIGR02103 412 ALNKTGLNVVMDVVYNHTNASGPNDRSV---LDKI----VPGYYHR---LN------EDGGVE---NSTCCSNTATEHRM 472 (898)
T ss_pred HHHHCCCEEEEEeecccccccCccCccc---cccc----CcHhhEe---eC------CCCCee---cCCCCcCCCCCCHH
Confidence 9999999999999999999876421111 1100 0111100 00 001111 11233568999999
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHH---HHhcCC-CeEEeeecCC
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVY---MENTSP-DFAVGEKWDS 231 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~---~~~~~p-~~~v~E~~~~ 231 (424)
||++|++.+++|++++||||||||.+++++.+||+++ +++++| ++++||.|..
T Consensus 473 Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~pdi~l~GEgW~~ 529 (898)
T TIGR02103 473 MAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALTPEIYFYGEGWDF 529 (898)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 9999999999999999999999999999999999998 556677 7799999974
No 31
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-38 Score=320.02 Aligned_cols=317 Identities=20% Similarity=0.255 Sum_probs=201.7
Q ss_pred CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 38 ~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.-|+++..+++|+|||+||||+|+||||.+.| .+|||+++-||++. ++|||.||||+||++||++||.||||+|+||
T Consensus 160 ~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~V~~H 238 (628)
T COG0296 160 FLGYFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDWVPNH 238 (628)
T ss_pred CcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 35899999999999999999999999999988 48999999999999 9999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeecCCCCCC-CCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGTSD-DRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
.+.+.. +...-+++.. ...++.. .++ ..|... -.|+..++||.++++++++|+++|
T Consensus 239 F~~d~~-----~L~~fdg~~~~e~~~~~~--------~~~---------~~Wg~~-i~~~gr~EVR~Fll~nal~Wl~~y 295 (628)
T COG0296 239 FPPDGN-----YLARFDGTFLYEHEDPRR--------GEH---------TDWGTA-IFNYGRNEVRNFLLANALYWLEEY 295 (628)
T ss_pred CCCCcc-----hhhhcCCccccccCCccc--------ccC---------CCcccc-hhccCcHHHHHHHHHHHHHHHHHh
Confidence 987543 2211111110 0001110 000 011111 145568999999999999999999
Q ss_pred CCCeEEecccCCCC------------------------HHHHHHH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCC
Q 014447 195 GFDGWRFDFVKGYA------------------------PSITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDG 246 (424)
Q Consensus 195 gvDGfR~D~a~~~~------------------------~~~~~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~ 246 (424)
+|||+|+|||..|. .+|.+.. +....| ++.|+|.|.+...-
T Consensus 296 HiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~----------- 364 (628)
T COG0296 296 HIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHV----------- 364 (628)
T ss_pred CCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCc-----------
Confidence 99999999997762 1233333 333345 67899988653210
Q ss_pred chhHHHHHHHhcCCceeeecccchH-HHHHHh----cchhhhhhhhcCCCCCCcCcCCCcceecccCCCCC--cCcccCC
Q 014447 247 HRGALKDWVQAAGGAVAAFDFTTKG-ILQAAV----QGELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTG--STQRLWP 319 (424)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~df~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~--r~~~~~~ 319 (424)
.+...+ +|.. |++.... .+.+.+ .....+-.......-++. ..++..+.+..|||+. -..++..
T Consensus 365 ---t~~~~~---gG~g--f~yk~nmg~m~D~~~y~~~~~~~r~~~h~~~tf~~~-y~~se~~~l~~sHDevvhGk~sl~~ 435 (628)
T COG0296 365 ---TLPVAI---GGLG--FGYKWNMGWMHDTLFYFGKDPVYRKYHHGELTFGLL-YAFSENVVLPLSHDEVVHGKRSLGE 435 (628)
T ss_pred ---eeeecc---cccc--hhhhhhhhhHhhHHHhcccCccccccccCCCccccc-cccceeEeccccccceeecccchhc
Confidence 000111 1111 2222111 122211 111111111111111111 1245668899999996 2222211
Q ss_pred -------CCchhHHHHHHHHHcCCCeeEEecCCCCC------------c-------------chHHHHHHHHHHHHhcCC
Q 014447 320 -------FPSDKVMLGYAYILTHPGTPCIFYDHFFD------------W-------------GLKEAISKLAAVRNRNGI 367 (424)
Q Consensus 320 -------~~~~~~~~a~a~~l~~pG~P~iyyG~~~~------------w-------------~l~~~~~~L~~lR~~~~a 367 (424)
...+.+|.++++|++.||+|+++||+|++ | ++..+.+.|.++-+..++
T Consensus 436 rm~g~~~~~~a~lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~ 515 (628)
T COG0296 436 RMPGDAWQKFANLRALAAYMWLHPGKPLLFMGEEFGQGREWNFFSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDP 515 (628)
T ss_pred cCCcchhhhHHHHHHHHHHHHhCCCceeeecchhhccCCCCcccCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCc
Confidence 13457889999999999999999999864 3 134445555556666666
Q ss_pred C-----CCCCeEEEec---CCCEEEEEE-----CCEEEEEECCC
Q 014447 368 N-----TASRVNILAS---DADVYIAAI-----GDRVIMKIGPK 398 (424)
Q Consensus 368 l-----~~G~~~~~~~---~~~v~~~~r-----~~~~lv~ln~~ 398 (424)
+ ....++|+.. ++++++|.| +++.+|++||+
T Consensus 516 l~~~~~~~~~~~W~~~~~~~~~v~af~R~l~~~~~~~lv~~~n~ 559 (628)
T COG0296 516 LHEQDFQPEGFEWIDADDAENSVLAFYRRLLALRHEHLVVVNNF 559 (628)
T ss_pred cchhhhcccCCceeecCchhhhHHHHHHHHhhcCCceEEEEeCC
Confidence 5 3345677664 236888887 45667777774
No 32
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=1.2e-36 Score=319.15 Aligned_cols=190 Identities=19% Similarity=0.221 Sum_probs=136.2
Q ss_pred ceEEEeecCCCC-------CCCCCcHHHHHhh-------hhHHHHcCCCEEEeCCCCCCC--------------------
Q 014447 24 ALLFQGFNWESS-------NKAGGWYNSLKNS-------IPDLSNAGITHVWLPPPSQSV-------------------- 69 (424)
Q Consensus 24 ~v~~~~f~~ds~-------~~~~G~~~gi~~~-------L~ylk~lGv~~I~l~Pi~~~~-------------------- 69 (424)
.|||++=..|-. .+..|+|.+++++ |+|||+||||+|+|||+++..
T Consensus 340 ~VIYElHVRDFS~~d~sv~~~~RGtylgftE~~s~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~ 419 (970)
T PLN02877 340 ISIYELHVRDFSANDETVHPDFRGGYLAFTSQDSAGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKL 419 (970)
T ss_pred cEEEEEeccccccCCCCCCcCCCCcchhhhhhhhhHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccc
Confidence 488866532221 2346999998886 667777799999999998731
Q ss_pred -------------------CCCCCCcccccCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCC
Q 014447 70 -------------------APQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDG 123 (424)
Q Consensus 70 -------------------~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~ 123 (424)
.+|||+|..|+.++ ..|+| ..|||+||++||++||+||||+|+|||+..++..
T Consensus 420 ~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPE-gSYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~ 498 (970)
T PLN02877 420 PPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPK-GSYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFD 498 (970)
T ss_pred cccchhhhhcccccccCCCCCCCCCccccCCCC-cccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccCCCCcc
Confidence 46999999999999 99998 3589999999999999999999999998654311
Q ss_pred CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 124 RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
... .+..- .+.|+. .......+.+ .....+.+.+++.||++|++.+++|++++||||||||.
T Consensus 499 ~~s--~ld~~----vP~YY~--r~~~~G~~~n----------s~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDl 560 (970)
T PLN02877 499 ENS--VLDKI----VPGYYL--RRNSDGFIEN----------STCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDL 560 (970)
T ss_pred hhh--cccCC----CCCceE--EECCCCCccc----------CCccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 000 01100 011110 0000011110 11223467899999999999999999999999999999
Q ss_pred cCCCCHHHHHHH---HHhc--------CC-CeEEeeecCCC
Q 014447 204 VKGYAPSITKVY---MENT--------SP-DFAVGEKWDSL 232 (424)
Q Consensus 204 a~~~~~~~~~~~---~~~~--------~p-~~~v~E~~~~~ 232 (424)
+.+++.+.++.+ ++++ .| ++++||-|.-.
T Consensus 561 mg~i~~~tm~~~~~~L~~i~~~~~~~dg~~i~lyGEgW~~g 601 (970)
T PLN02877 561 MGHLMKRTMVRAKDALQSLTLERDGVDGSSIYLYGEGWDFG 601 (970)
T ss_pred cccccHHHHHHHHHHHHHHhhhhcccCCCceEEEEeCCCCC
Confidence 999999877665 4554 24 77999999643
No 33
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=100.00 E-value=2.2e-35 Score=306.06 Aligned_cols=192 Identities=20% Similarity=0.265 Sum_probs=146.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+|||.+++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||+++|++||++||++||+||+|+|+||+
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~id-p~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~ 90 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEIN-PELGGEEGLRRLSEAARARGLGLIVDIVPNHM 90 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6999999999999999999999999999964 57999999999999 99999999999999999999999999999999
Q ss_pred CCC---CC-----------CCCcceee--cCCC------------CCC-------------C-----CCCCCCcccccCC
Q 014447 117 TAE---RK-----------DGRGIYCI--FEGG------------TSD-------------D-----RLDWGPSFICRGD 150 (424)
Q Consensus 117 ~~~---~~-----------~~~~~~~~--~~~~------------~~~-------------~-----~~~w~~~~~~~~~ 150 (424)
|.+ |+ ++..+|+. |... .+. . ...++.+.+.-..
T Consensus 91 a~~~~~n~wf~dvl~~g~~S~y~~~Fdidw~~~~~~gkvllP~Lg~~y~~~l~~g~l~l~~d~~~~~~l~y~~~~~Pi~p 170 (825)
T TIGR02401 91 AVHLEQNPWWWDVLKNGPSSAYAEYFDIDWDPLGGDGKLLLPILGDQYGAVLDRGEIKLRFDGDGTLALRYYDHRLPLAP 170 (825)
T ss_pred ccccccChHHHHHHHhCCCCCccCceEEeCCCCCCCCceeecccCchhhhHHhcCceeeeecCCCceeEEecCccCCcCc
Confidence 986 22 11122221 1100 000 0 0001111110110
Q ss_pred C------------------------------ccC--CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 151 K------------------------------EYS--DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 151 ~------------------------------~~~--~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
. .|. +..-||..+....+++.++.++|+|.++..+.+..|+++.-|||
T Consensus 171 ~ty~~il~~~~~~~~~~~l~~ll~~Q~yRL~~Wr~a~~~inYRrFf~i~~L~~lr~E~~~Vf~~~h~~i~~lv~~g~vdG 250 (825)
T TIGR02401 171 GTLPELEVLEDVPGDGDALKKLLERQHYRLTWWRVAAGEINYRRFFDINDLAGVRVEDPAVFDATHRLVLELVAEGLVDG 250 (825)
T ss_pred cchhhhhhhccccCChhhHHHHHHHHHHHhhhhhccccccCcccccCccccccccCCCHHHHHHHHHHHHHHHHcCCCce
Confidence 0 121 23356777777889999999999999999999999999555999
Q ss_pred EEecccCCC--CHHHHHHHHHhcCC-CeEEee-ecCC
Q 014447 199 WRFDFVKGY--APSITKVYMENTSP-DFAVGE-KWDS 231 (424)
Q Consensus 199 fR~D~a~~~--~~~~~~~~~~~~~p-~~~v~E-~~~~ 231 (424)
+|+|+++++ |..+|+.+-+..+| .++|.| ++..
T Consensus 251 lRIDh~dGL~dP~~Yl~rLr~~~~~~~yivvEKIl~~ 287 (825)
T TIGR02401 251 LRIDHIDGLADPEGYLRRLRELVGPARYLVVEKILAP 287 (825)
T ss_pred EEeccccccCChHHHHHHHHHhcCCCceEEEEEeccC
Confidence 999999999 78899999777776 778888 5444
No 34
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-36 Score=305.54 Aligned_cols=171 Identities=25% Similarity=0.410 Sum_probs=126.7
Q ss_pred CCceEEEeecCCCC-------CCCCCcHHHHHhh--hhHHHHcCCCEEEeCCCCCCC-----------CCCCCCcccccC
Q 014447 22 SPALLFQGFNWESS-------NKAGGWYNSLKNS--IPDLSNAGITHVWLPPPSQSV-----------APQGYMPGRLYD 81 (424)
Q Consensus 22 ~~~v~~~~f~~ds~-------~~~~G~~~gi~~~--L~ylk~lGv~~I~l~Pi~~~~-----------~~~gY~~~d~~~ 81 (424)
.+.|||++=..+-. ...+|||.+++++ |+|||+||||+|+||||+... ++|||+|..|++
T Consensus 170 ~~~vIYE~HVr~fT~~~~~v~~~~rGTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFA 249 (697)
T COG1523 170 EDTVIYEAHVRDFTQLHPGVPEELRGTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFA 249 (697)
T ss_pred cceEEEEeeecccccCCCCCchhhccceehhccccHHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccC
Confidence 44688876532222 2247999999999 999999999999999998621 589999999999
Q ss_pred CCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccC
Q 014447 82 LDASKYGS-------QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYS 154 (424)
Q Consensus 82 id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 154 (424)
++ ++|-+ ..|||.||+++|++||.||||+|+|||+..... +.-..|++ .+...++....++.|.
T Consensus 250 p~-~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~--g~t~~f~~------id~~~Yyr~~~dg~~~ 320 (697)
T COG1523 250 PE-GRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL--GPTLSFRG------IDPNYYYRLDPDGYYS 320 (697)
T ss_pred CC-ccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc--Cccccccc------CCcCceEEECCCCCee
Confidence 99 88876 459999999999999999999999999864321 11111222 1111111111112232
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHH
Q 014447 155 --DGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSIT 212 (424)
Q Consensus 155 --~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~ 212 (424)
.+++|- +|.++|.||++|++.+++|++|++|||||||-+..+..+..
T Consensus 321 N~TGcGNt-----------ln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~ 369 (697)
T COG1523 321 NGTGCGNT-----------LNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETM 369 (697)
T ss_pred cCCccCcc-----------cccCChHHHHHHHHHHHHHHHHhCCCceeecchhhcccccc
Confidence 234443 99999999999999999999999999999999987765543
No 35
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-34 Score=262.77 Aligned_cols=345 Identities=20% Similarity=0.328 Sum_probs=235.3
Q ss_pred CCCC-CCceEEEeecCCCCCCCCCcHHHHHhhh-hHHHHcCCCEEEeCCCCCCCC--------CCCCCcccccCCCCCCC
Q 014447 18 LPFT-SPALLFQGFNWESSNKAGGWYNSLKNSI-PDLSNAGITHVWLPPPSQSVA--------PQGYMPGRLYDLDASKY 87 (424)
Q Consensus 18 p~~~-~~~v~~~~f~~ds~~~~~G~~~gi~~~L-~ylk~lGv~~I~l~Pi~~~~~--------~~gY~~~d~~~id~~~~ 87 (424)
|.|+ +++.|+|.|+|. +.+|..+. ..|.--|+.+|+++|+.|+.. -..|+|.+ |+++ ++-
T Consensus 22 t~~~~~R~tmVHLFEWK--------W~DiA~ECE~FL~p~G~~gVQVSP~nEn~~~~~~~rPWWeRYQPvS-YKL~-tRS 91 (504)
T KOG2212|consen 22 TNTQQGRTTIVHLFEWK--------WVDIALECERFLAPKGFGGVQVSPPNENVAIHNPFRPWWERYQPVS-YKLC-TRS 91 (504)
T ss_pred chhhcCcceEEEEEEee--------hHHHHHHHHhhcCcCCcceeeecCcchhhhhcCCCCCceeecccce-EEee-ccC
Confidence 5555 678999999996 77776665 478999999999999999542 23799996 6799 999
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCC-----CCccee-----ecCCCCCCCCCCCCCcccccC----CCcc
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYC-----IFEGGTSDDRLDWGPSFICRG----DKEY 153 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~-----~~~~~~-----~~~~~~~~~~~~w~~~~~~~~----~~~~ 153 (424)
|.+|+|+.||+.|.+.|+||++|+|+||++....+ ..+.+. .|+ |-|+...++.+.. |.. ...|
T Consensus 92 GNE~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfP-GVPYs~~DFn~~k-c~~~~~~i~~~ 169 (504)
T KOG2212|consen 92 GNEDEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFP-GVPYSGWDFNDGK-CKTGSGDIENY 169 (504)
T ss_pred CCHHHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCC-CCCcccccCCCcc-cCCCccccccc
Confidence 99999999999999999999999999999853210 001110 011 1122222222211 111 1122
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcC-----------CC
Q 014447 154 SDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTS-----------PD 222 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~-----------p~ 222 (424)
.+ ......+..-++.|||..+..||.++++.+..+++ +||.|||+||+|||+++-+..++...+ ..
T Consensus 170 Nd--a~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLid-lGVAGFRvDAsKHMwp~Di~~I~~~l~nLnsD~f~s~srp 246 (504)
T KOG2212|consen 170 ND--ATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLID-IGVAGFRVDASKHMWPGDIKAILDKLHNLNSDWFPSGSKP 246 (504)
T ss_pred cc--hhhhhcceEeecchhhhcchHHHHHHHHHHHHHHH-hccceeeechhhccChHHHHHHHHHHhhcccccccCCCCc
Confidence 21 23445677899999999999999999999999998 999999999999999987777643321 13
Q ss_pred eEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcch-hhhhhhhcCCCCCCcCcCCCc
Q 014447 223 FAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQGE-LWRLKDSNGKPPGFIGILPQN 301 (424)
Q Consensus 223 ~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 301 (424)
|++.|+..-.... -+..+|. . .+....| .+...+..++.+. .+.+...++..-+.. ....
T Consensus 247 fi~qEVID~GgE~-v~~~dY~------------g--~G~~TeF--~f~~~ig~~~r~~~~~kyL~nwG~~wGf~--~s~~ 307 (504)
T KOG2212|consen 247 FIYQEVIDLGGEP-IKSSDYF------------G--NGRVTEF--KFGAKLGTVIRKWNKMKYLKNWGEGWGFM--PSDR 307 (504)
T ss_pred eehhhhhhcCCce-eeccccc------------C--Cceeeee--echHHHHHHHhcchhHHHHHhcCCccCcC--CCcc
Confidence 6777877432100 1112222 1 2344344 4445566666543 333333333222222 1346
Q ss_pred ceecccCCCCCcCccc-----CCC-CchhHHHHHHHHHcCC-CeeEEecCCCC---------------------------
Q 014447 302 AVTFIDNHDTGSTQRL-----WPF-PSDKVMLGYAYILTHP-GTPCIFYDHFF--------------------------- 347 (424)
Q Consensus 302 ~~~f~~nHD~~r~~~~-----~~~-~~~~~~~a~a~~l~~p-G~P~iyyG~~~--------------------------- 347 (424)
+++|++|||++|..+. +++ ..+++++|.++||+.| |+|.+...--+
T Consensus 308 ~L~FvDNHDNQR~~gagga~VltYK~~~~YkmA~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D~tC~ 387 (504)
T KOG2212|consen 308 ALVFVDNHDNQRGHGAGGASVLTYKDARLYKMAVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPDTTCG 387 (504)
T ss_pred eEEEeccCcccccCCCCcceEEEecchhhhhhhhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCCCccc
Confidence 7999999999997654 222 4568999999999999 99998775311
Q ss_pred -Cc---chHHHHHHHHHHHHhcCCCCCCCeEEEecCCCEEEEEECCEEEEEECCC
Q 014447 348 -DW---GLKEAISKLAAVRNRNGINTASRVNILASDADVYIAAIGDRVIMKIGPK 398 (424)
Q Consensus 348 -~w---~l~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~ 398 (424)
+| ..+..|++|..+|+.- -.+--..|.....+.++|.|+++.++++||.
T Consensus 388 ~GWvCEHRWrqI~~Mv~FrnAV--~~t~~~~w~d~g~nqIaF~Rg~kGF~A~Nn~ 440 (504)
T KOG2212|consen 388 NGWVCEHRWRQIRNMVNFRNAV--DGTPFTNWYDNGSNQIAFGRGNRGFIAFNND 440 (504)
T ss_pred CceeeechHHHHHHHHhhhhhc--CCccccceeeCCCcEEEEecCCccEEEEeCc
Confidence 24 4789999999999982 1222234555557899999999999999985
No 36
>PLN03244 alpha-amylase; Provisional
Probab=99.97 E-value=1.7e-30 Score=263.61 Aligned_cols=299 Identities=16% Similarity=0.234 Sum_probs=179.2
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCC
Q 014447 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSD 155 (424)
Q Consensus 76 ~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 155 (424)
+++|++++ ++|||.+|||+||++||++||+||||+|+||++.+....-. .|.+ ++. .|+ .. +
T Consensus 427 vt~fFAps-sRYGTPeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~---~fDG-t~~---~Yf---~~-------~ 488 (872)
T PLN03244 427 VTNFFAAS-SRYGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLS---LFDG-SND---CYF---HT-------G 488 (872)
T ss_pred cCcccccC-cccCCHHHHHHHHHHHHHCCCEEEEEecCccCCCccccchh---hcCC-Ccc---cee---cc-------C
Confidence 78999999 99999999999999999999999999999999976421100 0111 110 011 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC-------------------------HH
Q 014447 156 GQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA-------------------------PS 210 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~-------------------------~~ 210 (424)
..+ + ...| +...+|+.+++|+++|++++++|++++||||||+|++..|- ..
T Consensus 489 ~~g-~--~~~W-Gs~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~ 564 (872)
T PLN03244 489 KRG-H--HKHW-GTRMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALM 564 (872)
T ss_pred CCC-c--cCCC-CCceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHH
Confidence 000 0 1122 22469999999999999999999999999999999983331 12
Q ss_pred HHHHH---HHhcCC-CeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccch----HHHHHHhcc---
Q 014447 211 ITKVY---MENTSP-DFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTK----GILQAAVQG--- 279 (424)
Q Consensus 211 ~~~~~---~~~~~p-~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~----~~~~~~~~~--- 279 (424)
|++.+ +.+..| +++|||...+-+ . .. .-.. .+|+. ||+... ......+..
T Consensus 565 fL~laN~~ih~~~P~~itIAEDsS~~P--~-----vt---------~Pv~-~GGLG--FDYKWnMgwmdd~lkylk~~pd 625 (872)
T PLN03244 565 YLILANEILHALHPKIITIAEDATYYP--G-----LC---------EPTS-QGGLG--FDYYVNLSAPDMWLDFLDNIPD 625 (872)
T ss_pred HHHHHHHHHHHhCCCeEEEEEcCCCCc--C-----cc---------ccCC-CCCCC--ccceecCcchHHHHHHHHhCCC
Confidence 33333 566678 779999664311 0 00 0000 12222 444332 222222211
Q ss_pred hhhhhhhhcCCCCCCcCcCCCcceecccCCCCCcCc----cc-C-------CC--C----c--hhHHHHHHHHHcCCCee
Q 014447 280 ELWRLKDSNGKPPGFIGILPQNAVTFIDNHDTGSTQ----RL-W-------PF--P----S--DKVMLGYAYILTHPGTP 339 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~nHD~~r~~----~~-~-------~~--~----~--~~~~~a~a~~l~~pG~P 339 (424)
.-+.......... .........+.|.||||.+-.. .. + .+ + + +..+++-++++++||.|
T Consensus 626 erw~~~~ItfsL~-~nrr~~ek~~aYsESHDqaLvGdKTlaf~l~d~~~y~~~~~~~vv~Rg~aLhKMiRllt~~~~G~k 704 (872)
T PLN03244 626 HEWSMSKIVSTLI-ANKEYADKMLSYAENHNQSISGGRSFAEILFGAIDEDPLGGKELLDRGCSLHKMIRLITFTIGGHA 704 (872)
T ss_pred cccCHHHHhhhhh-cccCCcceEEEEecccceeccccchHHhhhcccccccccccchhhhhhhHHHHHHHHHHHHccCcc
Confidence 0011111000000 0001123558899999994221 10 0 00 0 1 12355556788899987
Q ss_pred -EEecCCCC----------------------Cc---------chHHHHHHHHHHHHhcCCCCCCCeEEE--ecCCCEEEE
Q 014447 340 -CIFYDHFF----------------------DW---------GLKEAISKLAAVRNRNGINTASRVNIL--ASDADVYIA 385 (424)
Q Consensus 340 -~iyyG~~~----------------------~w---------~l~~~~~~L~~lR~~~~al~~G~~~~~--~~~~~v~~~ 385 (424)
++|||+|+ +| .+..|+|.|++|++++++|..|...+. ..++.|+||
T Consensus 705 kLnFMGNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~~~d~e~kVIAF 784 (872)
T PLN03244 705 YLNFMGNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIHHVKDAAMVISF 784 (872)
T ss_pred ceeecccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEeeecCCCCEEEE
Confidence 79999854 24 267799999999999999976643332 346689999
Q ss_pred EECCEEEEEECCCCC-------CCCcCCCCcEEEEeCCc
Q 014447 386 AIGDRVIMKIGPKMD-------IGNLIPSDFKVAADGTD 417 (424)
Q Consensus 386 ~r~~~~lv~ln~~~~-------~~~~~~~~~~~~~~~~~ 417 (424)
.|. .+|+|+|.+.. +|-..++.|++.++.+.
T Consensus 785 ~R~-~LLfVfNF~P~~sy~dYrIGVp~~G~Y~eILNSD~ 822 (872)
T PLN03244 785 MRG-PFLFIFNFHPSNSYEGYDVGVEEAGEYQIILNSDE 822 (872)
T ss_pred Eec-CEEEEEeCCCCCCccCCEECCCCCCeEEEEEeCCh
Confidence 996 58888887532 23333456666665543
No 37
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=99.97 E-value=1.7e-30 Score=259.68 Aligned_cols=147 Identities=27% Similarity=0.440 Sum_probs=114.7
Q ss_pred CCcHHHHHhh-hhHHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHH------HHHHHHHHHHHcCCEEE
Q 014447 39 GGWYNSLKNS-IPDLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQA------DLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 39 ~G~~~gi~~~-L~ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~e------dl~~Lv~~aH~~Gi~Vi 108 (424)
+| +.+.++| |++||.||+|+|+||||+|.. ..+||+|+.|+++- ++|||.+ |||.||++||..||-|+
T Consensus 251 ~g-Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 251 GG-YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred cc-hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEe
Confidence 45 9999999 999999999999999999983 37999999999999 9999999 99999999999999999
Q ss_pred EeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 014447 109 ADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN 188 (424)
Q Consensus 109 lD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~ 188 (424)
||+|.||++.+..+ ....|.+-.+.. +++.+. .-+. ...+.--||+..|+|++++++.++
T Consensus 329 LDVV~sHaa~n~~d---~l~~fdGid~~~------Yf~~~~-r~~h----------~~~~~r~fn~~~~~V~rflL~nLr 388 (757)
T KOG0470|consen 329 LDVVHSHAAKNSKD---GLNMFDGIDNSV------YFHSGP-RGYH----------NSWCSRLFNYNHPVVLRFLLSNLR 388 (757)
T ss_pred hhhhhhhcccCcCC---cchhccCcCCce------EEEeCC-cccc----------cccccccccCCCHHHHHHHHHHHH
Confidence 99999999984321 122233211000 000000 0000 111122299999999999999999
Q ss_pred HHHHhcCCCeEEecccCCC
Q 014447 189 WLKTEIGFDGWRFDFVKGY 207 (424)
Q Consensus 189 ~w~~~~gvDGfR~D~a~~~ 207 (424)
||+.|++|||||+|.+..|
T Consensus 389 ~WVtEY~vDGFRFD~~ssm 407 (757)
T KOG0470|consen 389 WWVTEYHVDGFRFDLVSSM 407 (757)
T ss_pred HHHHheeccceEEcchhhh
Confidence 9999999999999998665
No 38
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.97 E-value=1.2e-29 Score=264.46 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=138.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||.++|++||++||++||+||+|+|+||+
T Consensus 16 ~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~id-p~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~ 94 (879)
T PRK14511 16 GFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRIN-PELGGEEGLRRLAAALRAHGMGLILDIVPNHM 94 (879)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcC-CCCCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 5899999999999999999999999999975 68999999999999 99999999999999999999999999999999
Q ss_pred CCCCC--------------CCCcceee--cCC--C--------CCCC------C-------------CCCCCcccccCCC
Q 014447 117 TAERK--------------DGRGIYCI--FEG--G--------TSDD------R-------------LDWGPSFICRGDK 151 (424)
Q Consensus 117 ~~~~~--------------~~~~~~~~--~~~--~--------~~~~------~-------------~~w~~~~~~~~~~ 151 (424)
|.+++ ++..+|+. |.. + .+.. . ..|...+.....+
T Consensus 95 ~~~~~~n~ww~dvl~~g~~S~y~~~Fdidw~~~~g~~llP~LG~~y~~~l~~g~l~l~~~~~g~~~~~y~d~~fPl~p~t 174 (879)
T PRK14511 95 AVGGPDNPWWWDVLEWGRSSPYADFFDIDWDSGEGKVLLPVLGDQYGEVLAAGELRLAFDDDGAFVLRYYDHRFPIAPGT 174 (879)
T ss_pred cCcCccCHHHHHHHHhCCCCCccCceeeeecCCCCceecCccCCcccchhhCCceEEeecCCCceEEEEcCccCCCCCCc
Confidence 98763 11223331 210 0 0000 0 0011001000000
Q ss_pred -------------------------------------------------------------------------ccC--CC
Q 014447 152 -------------------------------------------------------------------------EYS--DG 156 (424)
Q Consensus 152 -------------------------------------------------------------------------~~~--~~ 156 (424)
.|. +.
T Consensus 175 ~~~il~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~n~~~~~~~~~L~~ll~~Q~YRLa~Wr~a~~ 254 (879)
T PRK14511 175 YALILRHRLDLEALAAEFPALGELESILTAAQHLASPAVRAFIEQALAAFDGRKGDGRSRLDRLLERQHYRLASWRVADD 254 (879)
T ss_pred hhhhhhcchhHHHHHHHHhhhhcccchhhHHHhhcChHHHHHHHHHHHHhcCCCCchhhhHHHHHHhcceeccchhccCc
Confidence 011 11
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcC-CCeEEeeec
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTS-PDFAVGEKW 229 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~-p~~~v~E~~ 229 (424)
.-||.......++.-+.-++|+|.+..-..+..|+++=-|||+|+|.+..+ |...++.+-+... |.++|.|-.
T Consensus 255 eiNYRRFFdIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL~DP~~Yl~rLr~~~~~~~yivvEKI 330 (879)
T PRK14511 255 EINYRRFFDVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGLADPRGYLRRLRRRTGRGAYIVVEKI 330 (879)
T ss_pred ccCcceeecchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccccCHHHHHHHHHhccCCCCeEEEEec
Confidence 234555555577777778999999999999999999888999999999998 4566777644433 567888865
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.94 E-value=2.1e-27 Score=206.40 Aligned_cols=93 Identities=28% Similarity=0.554 Sum_probs=88.3
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
+++.+.|. ++.++++|||++++++|+|||+|||++|||+||++++ .++||++.||++++ |+|||++||++||++
T Consensus 1 qi~~~~F~-~~~~~~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~-~~~Gt~~d~~~lv~~ 78 (166)
T smart00642 1 QIYPDRFA-DGNGDGGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQID-PRFGTMEDFKELVDA 78 (166)
T ss_pred Ceeecccc-CCCCCCCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCC-cccCCHHHHHHHHHH
Confidence 47889999 6778889999999999999999999999999999988 68999999999999 999999999999999
Q ss_pred HHHcCCEEEEeeecccCCC
Q 014447 100 FRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 100 aH~~Gi~VilD~v~NH~~~ 118 (424)
||++||+||+|+|+||++.
T Consensus 79 ~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 79 AHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHCCCEEEEEECCCCCCC
Confidence 9999999999999999974
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.86 E-value=5e-21 Score=211.52 Aligned_cols=79 Identities=22% Similarity=0.375 Sum_probs=76.1
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+++|++++++|+||++|||++|||+||+++. ++|||++.||+.|| |+|||+++|++||++||++||+||+|+|+||+
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-p~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~ 832 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-PEIGGEEGFERFCAALKAHGLGQLLDIVPNHM 832 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-cccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 6899999999999999999999999999963 68999999999999 99999999999999999999999999999999
Q ss_pred CC
Q 014447 117 TA 118 (424)
Q Consensus 117 ~~ 118 (424)
+.
T Consensus 833 ~~ 834 (1693)
T PRK14507 833 GV 834 (1693)
T ss_pred CC
Confidence 95
No 41
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.83 E-value=2.6e-18 Score=184.74 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=77.5
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCC-CCCCCCCCCcccccCCCCCCCC----CHHHHHHHHHHHHHc-CCEEEEeee
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPS-QSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQK-GIKCLADMV 112 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~-~~~~~~gY~~~d~~~id~~~~G----t~edl~~Lv~~aH~~-Gi~VilD~v 112 (424)
-|+|.++.++|+|||++|+|.||++||+ .+++++.|++.||.+|| |.+| +.+||++||+++|++ ||++|+|+|
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~id-P~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDvV 206 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLN-QHFKSQKDGKNDVQALVEKLHRDWNVLSITDIV 206 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcC-hhhcccCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 5999999999999999999999999999 46788999999999999 9994 899999999999997 999999999
Q ss_pred cccCCCCCC
Q 014447 113 INHRTAERK 121 (424)
Q Consensus 113 ~NH~~~~~~ 121 (424)
+||||.+|+
T Consensus 207 ~NHTa~ds~ 215 (1464)
T TIGR01531 207 FNHTANNSP 215 (1464)
T ss_pred ecccccCCH
Confidence 999999874
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.4e-19 Score=177.62 Aligned_cols=80 Identities=23% Similarity=0.448 Sum_probs=75.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+=||...++.||||++|||.++|++||+... +.|||+|+|...|+ |.+|+.|.|.+||.++|++||.+|+|+|+||+
T Consensus 15 gFtF~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~In-PeLGG~egl~rLvaalk~~GlGlI~DIVPNHM 93 (889)
T COG3280 15 GFTFADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEIN-PELGGEEGLERLVAALKSRGLGLIVDIVPNHM 93 (889)
T ss_pred CCCHHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccC-hhhcChHHHHHHHHHHHhcCCceEEEecccch
Confidence 3479999999999999999999999999964 57999999999999 99999999999999999999999999999999
Q ss_pred CCC
Q 014447 117 TAE 119 (424)
Q Consensus 117 ~~~ 119 (424)
+..
T Consensus 94 av~ 96 (889)
T COG3280 94 AVG 96 (889)
T ss_pred hcc
Confidence 876
No 43
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=99.31 E-value=4e-11 Score=116.94 Aligned_cols=82 Identities=16% Similarity=0.306 Sum_probs=73.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCC------HHHHHHHHHHHH-HcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGS------QADLKSLIQAFR-QKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt------~edl~~Lv~~aH-~~Gi~VilD 110 (424)
-|.+.+..++|..++++|+|.|+++|+++- .+...|++.|..++| |.+.. .++++++|++++ +.||..|.|
T Consensus 18 ~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~-~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~D 96 (423)
T PF14701_consen 18 MGPFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFD-PDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTD 96 (423)
T ss_pred cCCHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcC-hhhcCCCccccHHHHHHHHHHHHHHcCceEEEE
Confidence 489999999999999999999999999984 457899999999999 77654 379999999996 799999999
Q ss_pred eecccCCCCCC
Q 014447 111 MVINHRTAERK 121 (424)
Q Consensus 111 ~v~NH~~~~~~ 121 (424)
+|+|||+.+++
T Consensus 97 vV~NHtA~nS~ 107 (423)
T PF14701_consen 97 VVLNHTANNSP 107 (423)
T ss_pred EeeccCcCCCh
Confidence 99999999763
No 44
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.18 E-value=9.2e-10 Score=109.68 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=104.6
Q ss_pred CCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHH---------------cCCCEEEeCCCCCCC---------------
Q 014447 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSN---------------AGITHVWLPPPSQSV--------------- 69 (424)
Q Consensus 20 ~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~---------------lGv~~I~l~Pi~~~~--------------- 69 (424)
......|+|+=.-.. .-.|+|.|+++--..|.+ .|+++|+|+||=+..
T Consensus 175 v~~P~nILQiHv~TA--sp~GtlaGLT~iyqria~K~~~g~pLtp~E~ny~GYDAvQLLPiEPtieyr~e~~~~h~Ff~~ 252 (811)
T PF14872_consen 175 VPAPRNILQIHVGTA--SPEGTLAGLTRIYQRIADKLAAGEPLTPAEENYVGYDAVQLLPIEPTIEYRAENEPGHEFFSI 252 (811)
T ss_pred cCCCceeEEEecCCC--CCCcchHHHHHHHHHHHHHHhcCCCCChhHHhcccccceeeeccCCcceeccccCCCCceeee
Confidence 344567777764221 226999999887666643 599999999984311
Q ss_pred ------------------------------CCCCCCc--ccccCCCCCCCCC--HHHHHHHHHHHHH---cCCEEEEeee
Q 014447 70 ------------------------------APQGYMP--GRLYDLDASKYGS--QADLKSLIQAFRQ---KGIKCLADMV 112 (424)
Q Consensus 70 ------------------------------~~~gY~~--~d~~~id~~~~Gt--~edl~~Lv~~aH~---~Gi~VilD~v 112 (424)
.+|||++ ....+.+|.-++| ++|+-.||..+|. ..|+||.|+|
T Consensus 253 ~~~d~~~~~~~~~~~~~~~~v~v~L~kPdtqNWGYDv~I~GsaAtNPalL~TlRPDElVdfiatLHnFp~gPIqvIyDlV 332 (811)
T PF14872_consen 253 RPEDEDELDPETEGVHEDGDVTVTLRKPDTQNWGYDVVILGSAATNPALLETLRPDELVDFIATLHNFPTGPIQVIYDLV 332 (811)
T ss_pred cccccccccccccccccCceEEEEecCCCccccCcceeeeccCCCCHHHHhcCCcHHHHHHHHHHhcCCCCCeEEEEeee
Confidence 2467874 3345556334666 6999999999995 7899999999
Q ss_pred cccCCCCCCC-CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 014447 113 INHRTAERKD-GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLK 191 (424)
Q Consensus 113 ~NH~~~~~~~-~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~ 191 (424)
+-|.-+-... -++. |-.+.+.|. -|+|+.+|.||+.+++.=+.=+
T Consensus 333 yGHADNQ~~~LLn~~--------------------------flkGPnMYG--------Qdlnhq~P~VRAILLEmQRRK~ 378 (811)
T PF14872_consen 333 YGHADNQALDLLNRR--------------------------FLKGPNMYG--------QDLNHQNPVVRAILLEMQRRKI 378 (811)
T ss_pred cccccchhhHhhhhh--------------------------hccCCcccc--------ccccccChHHHHHHHHHHHhhc
Confidence 9998443210 0111 111222221 1499999999999999888778
Q ss_pred HhcCCCeEEecccCCC
Q 014447 192 TEIGFDGWRFDFVKGY 207 (424)
Q Consensus 192 ~~~gvDGfR~D~a~~~ 207 (424)
+ +|+||+|+|.+..+
T Consensus 379 n-~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 379 N-TGADGIRVDGGQDF 393 (811)
T ss_pred c-cCCceeEecccccc
Confidence 7 99999999998765
No 45
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=9.1e-09 Score=105.86 Aligned_cols=81 Identities=15% Similarity=0.300 Sum_probs=73.2
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCC------CHHHHHHHHHHHHH-cCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYG------SQADLKSLIQAFRQ-KGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~G------t~edl~~Lv~~aH~-~Gi~VilD 110 (424)
-|.|.....+|.-.|+.|+|.|+++|+++- .+...|...|-.+++ +++- +.||.++||+.||+ -+|--|-|
T Consensus 138 LGpl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~-~~~~~~~~k~s~eDV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 138 LGPLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELN-PDFSRPNRKYSFEDVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred cCChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcC-hhhhccCCCCCHHHHHHHHHHHHhhcCeeeeeh
Confidence 488999999999999999999999999994 467789999988888 7766 78999999999995 89999999
Q ss_pred eecccCCCCC
Q 014447 111 MVINHRTAER 120 (424)
Q Consensus 111 ~v~NH~~~~~ 120 (424)
+|+||++.++
T Consensus 217 vV~NHtAnns 226 (1521)
T KOG3625|consen 217 VVYNHTANNS 226 (1521)
T ss_pred hhhhccccCC
Confidence 9999999876
No 46
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.88 E-value=7.9e-08 Score=96.99 Aligned_cols=204 Identities=22% Similarity=0.344 Sum_probs=123.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHH---------hcCCCeEEecccCCCCHHHHHHH---HHhc----------C
Q 014447 163 GEDFQPAPDIDHLNPRVQKELSDWMNWLKT---------EIGFDGWRFDFVKGYAPSITKVY---MENT----------S 220 (424)
Q Consensus 163 ~~~~~~~~dln~~np~v~~~l~~~~~~w~~---------~~gvDGfR~D~a~~~~~~~~~~~---~~~~----------~ 220 (424)
+..+----|+|=+||.|+.+.++++-|++. +-..||||+||+..+..+.++.. +++. .
T Consensus 137 GyEfLLaNDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADlLqia~dyfkaaYgv~~~~a~An 216 (809)
T PF02324_consen 137 GYEFLLANDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADLLQIAGDYFKAAYGVDKNDANAN 216 (809)
T ss_dssp S-S--SSEEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THHHHHHHHHHHHHH-TTTBHHHHC
T ss_pred cceeEEeccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHHHHHHHHHHHHHhCCCcChhhHh
Confidence 334445567899999999999999999996 67899999999999999877654 2321 3
Q ss_pred CCeEEeeecCCCCCCCCCCCCCCCCCchhHHHHHHHhcCCceeeecccchHHHHHHhcc------hhhhhhhhc-C-CCC
Q 014447 221 PDFAVGEKWDSLSYGPDGKPDANQDGHRGALKDWVQAAGGAVAAFDFTTKGILQAAVQG------ELWRLKDSN-G-KPP 292 (424)
Q Consensus 221 p~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~~~~~~~~~~------~~~~~~~~~-~-~~~ 292 (424)
..+.|-|.|.. .-..|+...+.....+|..++..+...+.. .+.++.... . +..
T Consensus 217 ~HlSilE~ws~------------------nd~~y~~~~g~~qL~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~ 278 (809)
T PF02324_consen 217 KHLSILEAWSS------------------NDPDYVKDTGNPQLTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSN 278 (809)
T ss_dssp TC--EESSSTT------------------THHHHHHHTTSSSBEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSE
T ss_pred hhheeeecccc------------------CChHHHhcCCCceeeecHHHHHHHHHHhcCCccccccHHHHhhhhhccccc
Confidence 45778899863 223777777777778898888777766532 233333311 0 000
Q ss_pred CCcCcCCCcceecccCCCCCc-----------C---cccCCC-----------------------CchhHHHHHHHHHcC
Q 014447 293 GFIGILPQNAVTFIDNHDTGS-----------T---QRLWPF-----------------------PSDKVMLGYAYILTH 335 (424)
Q Consensus 293 ~~~~~~~~~~~~f~~nHD~~r-----------~---~~~~~~-----------------------~~~~~~~a~a~~l~~ 335 (424)
....-.......|+.+||.+- . .....+ ..-.+-.++|+||+=
T Consensus 279 d~~en~a~pNYsFvrAHDsevQ~vI~~II~~~i~~~~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllLtN 358 (809)
T PF02324_consen 279 DSTENEAQPNYSFVRAHDSEVQTVIAQIIKDKINPNSDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLLTN 358 (809)
T ss_dssp E--SSESS-EEEES-BSSTTTHHHHHHHHHHHT-TTTCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHHH-
T ss_pred CCcCCcccCceeeeecccHHHHHHHHHHHHhhcCCcccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHHhC
Confidence 000001233467999999941 0 000111 111345799999997
Q ss_pred C-CeeEEecCCCCC-------c--chHHHHHHHHHHHHhcCCCCCCCeEEEe-----cCCCEEEEEE
Q 014447 336 P-GTPCIFYDHFFD-------W--GLKEAISKLAAVRNRNGINTASRVNILA-----SDADVYIAAI 387 (424)
Q Consensus 336 p-G~P~iyyG~~~~-------w--~l~~~~~~L~~lR~~~~al~~G~~~~~~-----~~~~v~~~~r 387 (424)
. .+|.|||||-+. - ..++.|..|++-|.++-+ |...+-. .+.+++.-.|
T Consensus 359 KDTVPRVYYGDLYtDdGQYMa~KSpYyDaI~tLLKaRikYva---GGQtM~~~~~~~~~~~vLtSVR 422 (809)
T PF02324_consen 359 KDTVPRVYYGDLYTDDGQYMATKSPYYDAITTLLKARIKYVA---GGQTMAVTYLNGDNSGVLTSVR 422 (809)
T ss_dssp SSSEEEEEHHHHBESSSSTTTSB-TTHHHHHHHHHHHHHH-----S-EEEEE--EEETTTSEEEEEE
T ss_pred CCCCceEEecccccccchhhhhcCchHHHHHHHHHHHHHhhc---CCceeeeecccCCCCceEEEEe
Confidence 5 999999998432 1 369999999999999853 3333322 3456888776
No 47
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.70 E-value=3.1e-08 Score=99.79 Aligned_cols=94 Identities=27% Similarity=0.425 Sum_probs=62.5
Q ss_pred ceEEEeec-CCCCC--CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccccCCC---CCCCC
Q 014447 24 ALLFQGFN-WESSN--KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLD---ASKYG 88 (424)
Q Consensus 24 ~v~~~~f~-~ds~~--~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id---~~~~G 88 (424)
+|||+.|. ...++ ...=+-.-|.+..+-+|++|||..||-|-..+.. ..||+-+|.|++. |.+||
T Consensus 565 qvIYEgFSNFQ~~~t~~~eytN~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYG 644 (809)
T PF02324_consen 565 QVIYEGFSNFQDFPTTPSEYTNVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYG 644 (809)
T ss_dssp -EEEE---TTB---SSGGGSHHHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB
T ss_pred chhhccccccccCCCChHHHHHHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCC
Confidence 59999994 11111 1123456788889999999999999999887542 3699999999998 88999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|.|||+.-|+++|+.||+||.|+|++.+-
T Consensus 645 s~~dL~~AikALH~~GiqviaDwVpdQiY 673 (809)
T PF02324_consen 645 SVEDLRNAIKALHAAGIQVIADWVPDQIY 673 (809)
T ss_dssp -HHHHHHHHHHHHHTT-EEEEEE-TSEE-
T ss_pred CHHHHHHHHHHHHHcCcchhhhhchHhhh
Confidence 99999999999999999999999999883
No 48
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.57 E-value=9e-07 Score=73.62 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=80.3
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
.+-+++||++|+++|.+.-= .-...-|-|+..-..+ |.++ .+-|+++|++||++||+|++=+-++ .-..-...+.
T Consensus 3 ~~~~~~lk~~~v~si~i~a~--~h~g~ayYPt~~~~~h-p~L~-~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HP 77 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAK--CHGGYAYYPTKVGPRH-PGLK-RDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHP 77 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcc--cccEEEEccCCCCcCC-CCCC-cCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCC
Confidence 35678999999999998520 0011234466666677 8888 7889999999999999999766665 2111111223
Q ss_pred ceeec-CCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 126 IYCIF-EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 126 ~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+|..- .+|++.... ....++...+...+|.. +++++.++..++.+.+|||=+|.
T Consensus 78 eW~~~~~~G~~~~~~-----------------------~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 78 EWFVRDADGRPMRGE-----------------------RFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred ceeeECCCCCCcCCC-----------------------CcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEEEecC
Confidence 34321 112210000 00111122244445554 89999999999899999998874
No 49
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.49 E-value=1.6e-06 Score=83.36 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=81.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCC--CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYG--SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~G--t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-+.+.+.|+.|+++|+|+|.+-=-..+.. ...+.+..-+... ...+ +-+=|+.+|++||++||+|..=+.+...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g-~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~ 95 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTG-KQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFN 95 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCC-CCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecC
Confidence 567788999999999999998742212110 1122222111111 1111 2567999999999999999976644332
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gv 196 (424)
+..... . ....+.|......+....+.+. .....-||-.+|+||+++++.++..++.+.|
T Consensus 96 ~~~~~~-------~----~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Ydv 155 (311)
T PF02638_consen 96 APDVSH-------I----LKKHPEWFAVNHPGWVRTYEDA---------NGGYYWLNPGHPEVRDYIIDIVKEIVKNYDV 155 (311)
T ss_pred CCchhh-------h----hhcCchhheecCCCceeecccC---------CCCceEECCCCHHHHHHHHHHHHHHHhcCCC
Confidence 221000 0 0001122110000000000000 1122239999999999999999999999999
Q ss_pred CeEEecc
Q 014447 197 DGWRFDF 203 (424)
Q Consensus 197 DGfR~D~ 203 (424)
||+-+|-
T Consensus 156 DGIhlDd 162 (311)
T PF02638_consen 156 DGIHLDD 162 (311)
T ss_pred CeEEecc
Confidence 9999994
No 50
>smart00810 Alpha-amyl_C2 Alpha-amylase C-terminal beta-sheet domain. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C-terminus. This domain is organised as a five-stranded anti-parallel beta-sheet.
Probab=98.34 E-value=3.8e-06 Score=59.00 Aligned_cols=56 Identities=61% Similarity=1.098 Sum_probs=51.6
Q ss_pred CCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCCCCcEEEEeCCcEEEEec
Q 014447 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIPSDFKVAADGTDYAVWEK 423 (424)
Q Consensus 368 l~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (424)
-.+...+++..+.++++...+++++|-|...++.+++.|.+|+++++|.+|+||++
T Consensus 6 ~~~S~v~I~~Ae~dlY~A~Id~kv~~KiGp~~~~~~~~P~~w~~a~sG~~yaVWek 61 (61)
T smart00810 6 HSRSSLKILAAEADLYVAMIDEKVIMKIGPRYDVGNLIPSGFHLAASGNDYAVWEK 61 (61)
T ss_pred CCCCceEEEEecCCcEEEEeCCeEEEEECCCCCcCccCCCCCEEEEECCCEEEEeC
Confidence 34567888899999999999999999999999999999999999999999999975
No 51
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=98.27 E-value=0.00013 Score=74.35 Aligned_cols=45 Identities=16% Similarity=0.117 Sum_probs=38.0
Q ss_pred CceEEEeecCCCCCCCCCcHH-HHHhhhhHHHHcCCCEEEeCCCCCC
Q 014447 23 PALLFQGFNWESSNKAGGWYN-SLKNSIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~-gi~~~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
.+|..|+|.. ...-|+|||. ++.+-++.+++.|++.|+|+|++..
T Consensus 7 ~Gv~~~l~SL-~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~ 52 (497)
T PRK14508 7 SGILLHITSL-PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPT 52 (497)
T ss_pred eEEEeccccC-CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3688898876 2334689996 9999999999999999999999874
No 52
>PLN02635 disproportionating enzyme
Probab=98.12 E-value=0.00021 Score=73.03 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=37.5
Q ss_pred ceEEEeecCCCCCCCCCcHHHHH-hhhhHHHHcCCCEEEeCCCCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLK-NSIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~-~~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
+|+.|+|...+. -|+|||.... +-++.+++.|.+.++|+|++..
T Consensus 31 Gvll~l~SLps~-~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt 75 (538)
T PLN02635 31 GILLHPTSLPGP-YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPP 75 (538)
T ss_pred EEEEccccCCCC-CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 699999987653 4679998755 7899999999999999999875
No 53
>PF07821 Alpha-amyl_C2: Alpha-amylase C-terminal beta-sheet domain; InterPro: IPR012850 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the beta-sheet domain that is found in several alpha-amylases, usually at the C terminus. This domain is organised as a five-stranded anti-parallel beta-sheet [, ]. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0005975 carbohydrate metabolic process; PDB: 1AVA_B 1BG9_A 1AMY_A 1RP8_A 2QPU_A 3BSG_A 2QPS_A 3BSH_A 1RP9_A 1HT6_A ....
Probab=97.84 E-value=7.5e-05 Score=52.08 Aligned_cols=52 Identities=60% Similarity=0.986 Sum_probs=43.3
Q ss_pred CCCCCeEEEecCCCEEEEEECCEEEEEECCCCCCCCcCC--CCcEEEEeCCcEEEEec
Q 014447 368 NTASRVNILASDADVYIAAIGDRVIMKIGPKMDIGNLIP--SDFKVAADGTDYAVWEK 423 (424)
Q Consensus 368 l~~G~~~~~~~~~~v~~~~r~~~~lv~ln~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 423 (424)
-.+...+++..+.++|+...+++++|-|+. +++.| .+|++++.|.+|+||++
T Consensus 6 ~~~S~v~I~~Ae~d~YaA~Id~kv~~KiGp----~~~~P~~~~w~~a~~G~dyaVWek 59 (59)
T PF07821_consen 6 HCRSKVKILAAEADLYAAIIDDKVIMKIGP----RDWSPSGSGWKLAASGDDYAVWEK 59 (59)
T ss_dssp -TT--EEEEEEETTEEEEEETTTEEEEESS-----GGS---TTEEEEEEETTEEEEEE
T ss_pred CCCCceEEEEecCCcEEEEECCeEEEEECC----CccccCCCCcEEEeECCcEEEEeC
Confidence 345678889999999999999999999999 57777 69999999999999975
No 54
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=8.2e-05 Score=73.00 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=82.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC----ccccc--CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM----PGRLY--DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~----~~d~~--~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+=..+.+.|+.|+.||||+|+.. ....++.-|. +..-. -+- ..-++-+=|+.+|++||+|||+|+.=+-+
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~q--V~~~G~~lypS~~~p~s~~~~~~~-~~~~g~DpLa~~I~~AHkr~l~v~aWf~~ 137 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQ--VWNDGDALYPSAVLPWSDGLPGVL-GVDPGYDPLAFVIAEAHKRGLEVHAWFNP 137 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEE--EecCccccccccccccccCcCccc-CCCCCCChHHHHHHHHHhcCCeeeechhh
Confidence 455678889999999999999943 2222211111 11100 000 11234567999999999999999865544
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
--++........ .++.|..... +++.+. .+..+....=||-..|+|++++.+.+...+..
T Consensus 138 ~~~a~~~s~~~~-----------~~p~~~~~~~--~~~~~~-------~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~ 197 (418)
T COG1649 138 YRMAPPTSPLTK-----------RHPHWLTTKR--PGWVYV-------RHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN 197 (418)
T ss_pred cccCCCCChhHh-----------hCCCCcccCC--CCeEEE-------ecCCceeeeEeCCCChHHHHHHHHHHHHHHhC
Confidence 444432211000 0111111100 001110 00000022238999999999999999999999
Q ss_pred cCCCeEEeccc
Q 014447 194 IGFDGWRFDFV 204 (424)
Q Consensus 194 ~gvDGfR~D~a 204 (424)
|.|||+-+|-.
T Consensus 198 YdvDGIQfDd~ 208 (418)
T COG1649 198 YDVDGIQFDDY 208 (418)
T ss_pred CCCCceeccee
Confidence 99999999974
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.76 E-value=0.00027 Score=68.10 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=88.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.| ++.|+|=.=+.. +|...| +..|+.+|- +.+.||+++|++|++|++-+.+ +.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~----~~~~~~-f~~d~~~FP---d~~~~i~~l~~~G~~~~~~~~P-~i~~ 92 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIHLDCFWMK----EFQWCD-FEFDPDRFP---DPEGMLSRLKEKGFKVCLWINP-YIAQ 92 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEeccccc----CCccee-eEECcccCC---CHHHHHHHHHHCCCeEEEEecC-CCCC
Confidence 5677888899999999 777887653331 232233 445635676 4789999999999999999886 5655
Q ss_pred CCCCC----CcceeecCC-CCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKDG----RGIYCIFEG-GTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~~----~~~~~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++.. ...|+.... +++.... .| -....-+|+.||++++...+.++.+.+
T Consensus 93 ~~~~~~e~~~~g~~v~~~~g~~~~~~------------~w------------~g~~~~~Dftnp~a~~w~~~~~~~~~~- 147 (308)
T cd06593 93 KSPLFKEAAEKGYLVKKPDGSVWQWD------------LW------------QPGMGIIDFTNPDACKWYKDKLKPLLD- 147 (308)
T ss_pred CchhHHHHHHCCeEEECCCCCeeeec------------cc------------CCCcccccCCCHHHHHHHHHHHHHHHH-
Confidence 44310 112221110 0000000 00 011223899999999999999999988
Q ss_pred cCCCeEEecccCCCCH
Q 014447 194 IGFDGWRFDFVKGYAP 209 (424)
Q Consensus 194 ~gvDGfR~D~a~~~~~ 209 (424)
.|||||-+|....+|.
T Consensus 148 ~Gid~~~~D~~e~~p~ 163 (308)
T cd06593 148 MGVDCFKTDFGERIPT 163 (308)
T ss_pred hCCcEEecCCCCCCCc
Confidence 9999999998876654
No 56
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=97.75 E-value=0.00078 Score=75.88 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=39.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~ 67 (424)
.+..|+|...|..+ |+|||.++.+-++.+++.|.+.|+|+|++.
T Consensus 726 Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~ 770 (1221)
T PRK14510 726 GILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHP 770 (1221)
T ss_pred EEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 58889998887554 579999999999999999999999999986
No 57
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=97.71 E-value=0.00013 Score=74.86 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=32.3
Q ss_pred EeecCCCCCC-CCCcH-HHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCC
Q 014447 28 QGFNWESSNK-AGGWY-NSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKY 87 (424)
Q Consensus 28 ~~f~~ds~~~-~~G~~-~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~ 87 (424)
|+|...|..+ |+||| .++.+-++.+++.|+..++|.|+..... +..|++.+-+.+| |-|
T Consensus 2 ~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~~~sPY~p~S~~alN-Ply 64 (496)
T PF02446_consen 2 PLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPGNSSPYSPSSRFALN-PLY 64 (496)
T ss_dssp -GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B-TTCTTTTSBS-SSS---GGG
T ss_pred CCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCCCCCCCCCCCCCcCC-hHH
Confidence 4555455443 58999 9999999999999999999999997532 3368877777777 444
No 58
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=97.63 E-value=0.00012 Score=56.66 Aligned_cols=47 Identities=13% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEe----cCCCEEEEEE---CCEEEEEECCCCC
Q 014447 354 AISKLAAVRNRNGINTASRVNILA----SDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 354 ~~~~L~~lR~~~~al~~G~~~~~~----~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
+||+||++|+++|+|+.|....+. .++.++++.| +++++|++|.+.+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~~~~~~~~~l~~~~r~~~~~~l~v~~Nls~~ 54 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLEVERDAPDALLAFRRTGGGERLLVAFNLSDE 54 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEEEEEEEETTEEEEEEEETTEEEEEEEE-SSS
T ss_pred CHHHHHHHHhhCccccCCCcccEEEEecCCCEEEEEEEEcCCceEEEEEecCCC
Confidence 699999999999999999877655 3556777777 4577888887654
No 59
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.50 E-value=0.0017 Score=64.25 Aligned_cols=138 Identities=17% Similarity=0.122 Sum_probs=82.2
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCC-CCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPP-PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~P-i~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
-..|.+.++.++++|++.+.|== -+......--...|+ .+|+.+|- +.++.|++.+|++||+.-|=+-+--++.++
T Consensus 57 e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW-~~~~~kFP--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 57 EEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDW-EPDPKKFP--NGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBE-CBBTTTST--THHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCce-eEChhhhC--CcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 45577788899999999988742 222211111112333 34534664 359999999999999999988777666655
Q ss_pred CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEE
Q 014447 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWR 200 (424)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR 200 (424)
+.... .++|.-... +... . ....+.-||+++|+|++++.+.+..++++.|||.|-
T Consensus 134 ~l~~~------------hPdw~l~~~--~~~~-~----------~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 134 DLYRE------------HPDWVLRDP--GRPP-T----------LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp CHCCS------------SBGGBTCCT--TSE--E----------CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHHh------------CccceeecC--CCCC-c----------CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 42111 122321100 0000 0 001112399999999999999999888889999999
Q ss_pred ecccCCC
Q 014447 201 FDFVKGY 207 (424)
Q Consensus 201 ~D~a~~~ 207 (424)
+|.-..+
T Consensus 189 ~D~n~~~ 195 (394)
T PF02065_consen 189 WDFNRDI 195 (394)
T ss_dssp EE-TS-T
T ss_pred eccccCC
Confidence 9987555
No 60
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.43 E-value=0.0023 Score=61.47 Aligned_cols=132 Identities=17% Similarity=0.271 Sum_probs=83.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.| ++.|+|=-=+.. ++ .| +..|+.+|- +.++||+++|++|+|+++=+-+ +.+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~--g~-f~~d~~~FP---dp~~mi~~l~~~G~k~~l~i~P-~i~~ 96 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQIEIDDNWET----CY--GD-FDFDPTKFP---DPKGMIDQLHDLGFRVTLWVHP-FINT 96 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cC--Cc-cccChhhCC---CHHHHHHHHHHCCCeEEEEECC-eeCC
Confidence 4677888889999988 467776432211 11 23 345524665 4899999999999999998888 4544
Q ss_pred CCCC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++. ....+...... +. .......+ ....-+|+.||++++...+.++.++.+
T Consensus 97 ~s~~~~e~~~~g~~vk~~~----------------------g~-~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 153 (303)
T cd06592 97 DSENFREAVEKGYLVSEPS----------------------GD-IPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEK 153 (303)
T ss_pred CCHHHHhhhhCCeEEECCC----------------------CC-CCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHH
Confidence 4321 11112111100 00 00000011 112238999999999999999999966
Q ss_pred cCCCeEEecccCC
Q 014447 194 IGFDGWRFDFVKG 206 (424)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (424)
.|||||-+|....
T Consensus 154 ~Gvdg~w~D~~E~ 166 (303)
T cd06592 154 YGIDSFKFDAGEA 166 (303)
T ss_pred hCCcEEEeCCCCc
Confidence 9999999999754
No 61
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=97.28 E-value=0.017 Score=59.36 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=37.5
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHh-hhhHHHHcCCCEEEeCCCCCC
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKN-SIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~-~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
+|..|+|...|. -|+|||..+.. -++.+++-|....+|.|+.+.
T Consensus 17 Gvll~l~SL~s~-~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~ 61 (513)
T TIGR00217 17 GILLQLYSLPSE-WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPA 61 (513)
T ss_pred EEEeccccCCCC-CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCC
Confidence 699999988877 67899999985 468889999999999998873
No 62
>PRK09936 hypothetical protein; Provisional
Probab=97.25 E-value=0.0037 Score=58.07 Aligned_cols=191 Identities=14% Similarity=0.170 Sum_probs=105.4
Q ss_pred CccccchhhhHhhhhccCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCccccc
Q 014447 1 MSTLKSFCFLSFLLAIFLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY 80 (424)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~ 80 (424)
|.++..+|+++++++ .+.-|...++||-++-|+.- +-....+.+..++.+||++|.+- -.+|
T Consensus 1 m~~~~~~~l~~l~~~-~~~~a~~g~F~Qp~n~d~~~----~~~qWq~~~~~~~~~G~~tLivQ-------Wt~y------ 62 (296)
T PRK09936 1 MRKFIFVLLTLLLVS-PFSQAMKGIFYQPQNRDSQV----TDTQWQGLWSQLRLQGFDTLVVQ-------WTRY------ 62 (296)
T ss_pred ChhHHHHHHHHHHcC-chhhccccceeccccccCCC----CHHHHHHHHHHHHHcCCcEEEEE-------eeec------
Confidence 444444444444332 22678889999988766433 46778888999999999999874 1122
Q ss_pred CCCCCCCCCH-HHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC---CCccCCC
Q 014447 81 DLDASKYGSQ-ADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG---DKEYSDG 156 (424)
Q Consensus 81 ~id~~~~Gt~-edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~ 156 (424)
-| +.||+. --|.+.+++|++.||+|++=+.++-- |+.--.........|.+..-..+ ...|+..
T Consensus 63 -G~-~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~Dp~----------y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~ 130 (296)
T PRK09936 63 -GD-ADFGGQRGWLAKRLAAAQQAGLKLVVGLYADPE----------FFMHQKQDGAALESYLNRQLGASLQQARLWSAA 130 (296)
T ss_pred -cC-CCcccchHHHHHHHHHHHHcCCEEEEcccCChH----------HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 23 456654 45899999999999999998877532 11000000000000100000000 0011112
Q ss_pred CCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHhcCCC----eEEecccCCCCHHHHHHHHHhcCC
Q 014447 157 QGNDDTGEDFQPAPD-IDHLNPRVQKELSDWMNWLKTEIGFD----GWRFDFVKGYAPSITKVYMENTSP 221 (424)
Q Consensus 157 ~~~~~~~~~~~~~~d-ln~~np~v~~~l~~~~~~w~~~~gvD----GfR~D~a~~~~~~~~~~~~~~~~p 221 (424)
.+....++..+...| .+|..++-|+.+...++..+....+- .+-.=....+.++.+..+++...+
T Consensus 131 ~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~~~~kPv~ISay~~g~~sP~~l~~Wl~~l~~ 200 (296)
T PRK09936 131 WGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLIDVSAKPVHISAFFAGNMSPDGYRQWLEQLKA 200 (296)
T ss_pred cCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCCCCCCCeEEEeecccCCChHHHHHHHHHHhh
Confidence 222223444555555 78888888888888887776522200 222212244566666666665544
No 63
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.18 E-value=0.003 Score=60.39 Aligned_cols=133 Identities=18% Similarity=0.288 Sum_probs=83.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC----CHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG----SQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G----t~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
|+=..+.+.|+.+++-|+|+|.|- -...+|.=..+.........| ...|+++|+++||++||.+|.=+|.=
T Consensus 10 ~~~~~~~~~~~~i~~t~lNavVID----vKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~F- 84 (316)
T PF13200_consen 10 GSPERLDKLLDLIKRTELNAVVID----VKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVF- 84 (316)
T ss_pred CCHHHHHHHHHHHHhcCCceEEEE----EecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEe-
Confidence 444557777899999999999874 112333111111000001122 24689999999999999999998872
Q ss_pred CCCCCCCCCcceeecCCCC-CCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGT-SDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
.+.. ...+++|.- ...++..|.+..+ ..=+|--+++||+|.+++.+...+ .
T Consensus 85 ---------------kD~~la~~~pe~av--~~~~G~~w~d~~~----------~~WvnP~~~evw~Y~i~IA~Eaa~-~ 136 (316)
T PF13200_consen 85 ---------------KDPVLAEAHPEWAV--KTKDGSVWRDNEG----------EAWVNPYSKEVWDYNIDIAKEAAK-L 136 (316)
T ss_pred ---------------cChHHhhhChhhEE--ECCCCCcccCCCC----------CccCCCCCHHHHHHHHHHHHHHHH-c
Confidence 2100 001223321 1222333433322 223888999999999999999998 9
Q ss_pred CCCeEEecccC
Q 014447 195 GFDGWRFDFVK 205 (424)
Q Consensus 195 gvDGfR~D~a~ 205 (424)
|+|.+-+|=+.
T Consensus 137 GFdEIqfDYIR 147 (316)
T PF13200_consen 137 GFDEIQFDYIR 147 (316)
T ss_pred CCCEEEeeeee
Confidence 99999999764
No 64
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.01 E-value=0.0018 Score=63.23 Aligned_cols=149 Identities=15% Similarity=0.191 Sum_probs=79.1
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCC-----CCCCC------ccccc--CCCC-CCCCCHHHHHHHHHHHHHcC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVA-----PQGYM------PGRLY--DLDA-SKYGSQADLKSLIQAFRQKG 104 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~-----~~gY~------~~d~~--~id~-~~~Gt~edl~~Lv~~aH~~G 104 (424)
+-..+.+-++.+++.|| ++|+|=+-+.... +..|. ...+. ..++ .+|- +.++||+++|++|
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP---dp~~mi~~Lh~~G 98 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP---NPKGMIDELHEQG 98 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC---CHHHHHHHHHHCC
Confidence 46778888888988775 7888864221100 11121 11111 1110 1222 6899999999999
Q ss_pred CEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCC-CCCCCC-CCCCCCCCCCHHHHHH
Q 014447 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGND-DTGEDF-QPAPDIDHLNPRVQKE 182 (424)
Q Consensus 105 i~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~dln~~np~v~~~ 182 (424)
+||++=+.+ ++..+.......+..+..+.. .++ + .. +..+.. .....| ....-+|+.||++++.
T Consensus 99 ~kv~l~v~P-~i~~~~~~~~~~~~~~~~~~~---~g~---~-vk------~~~G~~~~~~~~W~g~~~~~Dftnp~a~~W 164 (340)
T cd06597 99 VKVLLWQIP-IIKLRPHPHGQADNDEDYAVA---QNY---L-VQ------RGVGKPYRIPGQWFPDSLMLDFTNPEAAQW 164 (340)
T ss_pred CEEEEEecC-ccccccccccccchhHHHHHH---CCE---E-EE------cCCCCccccccccCCCceeecCCCHHHHHH
Confidence 999986555 222111000000000000000 000 0 00 000000 000011 1223489999999999
Q ss_pred HHHHHHHHHHhcCCCeEEecccCC
Q 014447 183 LSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 183 l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
..+.++.++++.|||||-+|+...
T Consensus 165 w~~~~~~~~~~~Gidg~w~D~~E~ 188 (340)
T cd06597 165 WMEKRRYLVDELGIDGFKTDGGEH 188 (340)
T ss_pred HHHHHHHHHHhcCCcEEEecCCCc
Confidence 999999999779999999998754
No 65
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=96.84 E-value=0.0054 Score=63.12 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=78.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCC---CC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQ---SV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.....+.|+.|++.-||+|+.==.+- .| ...+--...+.++- .+-=+.+-.|.+|++||+.||+.|.=.-+.-
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~-~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiya 194 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWA-NRQISTSTVKDYINAAHKYGMKAMAYNMIYA 194 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT---EEEHHHHHHHHHHHHHTT-EEEEEEESSE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhc-CCEehHHHHHHHHHHHHHcCcceehhHhhhc
Confidence 567788899999999999999732211 00 00000011233333 3333478899999999999999998765554
Q ss_pred CCCCCC--CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHH
Q 014447 116 RTAERK--DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKT 192 (424)
Q Consensus 116 ~~~~~~--~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~ 192 (424)
...+.. +....|..|.+.... .++.... .+ .|+. +-=.|..|+.=|++|.+.+...++
T Consensus 195 a~~~~~~~gv~~eW~ly~d~~~~---~~~~~~l-~~---------------~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~ 255 (559)
T PF13199_consen 195 ANNNYEEDGVSPEWGLYKDDSHS---NQDTYDL-PD---------------GWPSDLYLMDPGNPEWQNYIINQMNKAIQ 255 (559)
T ss_dssp EETT--S--SS-GGBEEESSSBT---SB-EEEE-TT----------------E--EEEEB-TT-HHHHHHHHHHHHHHHH
T ss_pred cccCcccccCCchhhhhhccCCC---ccceeec-Cc---------------ccccceEEecCCCHHHHHHHHHHHHHHHH
Confidence 433321 133446666542211 1110000 00 0000 222789999999999999999999
Q ss_pred hcCCCeEEecccC
Q 014447 193 EIGFDGWRFDFVK 205 (424)
Q Consensus 193 ~~gvDGfR~D~a~ 205 (424)
.+|+|||-+|...
T Consensus 256 ~~gFDG~hlDq~G 268 (559)
T PF13199_consen 256 NFGFDGWHLDQLG 268 (559)
T ss_dssp HHT--EEEEE-S-
T ss_pred ccCCceEeeeccC
Confidence 9999999999874
No 66
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=96.83 E-value=0.0058 Score=53.09 Aligned_cols=88 Identities=13% Similarity=0.209 Sum_probs=61.1
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHc
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK 103 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~ 103 (424)
++++|...||.. . -=+-....+.+.++|++||++|.|. ..+-...-+.+..++.-. -..+..+-+..+.++|.+.
T Consensus 3 GtF~q~~~~d~~-~-~~~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~-~~~~~~d~l~~~L~~A~~~ 77 (166)
T PF14488_consen 3 GTFLQPWSWDIH-Q-NWTPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGG-FYMPPVDLLEMILDAADKY 77 (166)
T ss_pred eEEEccccchhh-c-CCCHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCcc-ccCCcccHHHHHHHHHHHc
Confidence 567787777651 1 1235788899999999999999987 222122223344442222 3345678899999999999
Q ss_pred CCEEEEeeecccC
Q 014447 104 GIKCLADMVINHR 116 (424)
Q Consensus 104 Gi~VilD~v~NH~ 116 (424)
||+|++-+-++..
T Consensus 78 Gmkv~~Gl~~~~~ 90 (166)
T PF14488_consen 78 GMKVFVGLYFDPD 90 (166)
T ss_pred CCEEEEeCCCCch
Confidence 9999999988743
No 67
>PRK10426 alpha-glucosidase; Provisional
Probab=96.73 E-value=0.016 Score=61.30 Aligned_cols=152 Identities=18% Similarity=0.316 Sum_probs=85.9
Q ss_pred cCCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcC--CCEEEeCCCCCCCC--CCCCCcc-cccCCCCCCCCCHH
Q 014447 17 FLPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVA--PQGYMPG-RLYDLDASKYGSQA 91 (424)
Q Consensus 17 ~p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~--~~gY~~~-d~~~id~~~~Gt~e 91 (424)
.|.|+-+..++. +. +.-+.+.+.++.+++.| +++|||- -+.... +.|...- + +..|+.+|-
T Consensus 204 ~P~Wal~G~~~g-~~--------~~~~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~-~~~d~~~FP--- 269 (635)
T PRK10426 204 LPDWAYDGVTLG-IQ--------GGTEVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWN-WKWDSERYP--- 269 (635)
T ss_pred CChhhccCcccc-cc--------CCHHHHHHHHHHHHHcCCCeeEEEEe-ccccccccccccccccc-ceEChhhCC---
Confidence 477776455432 22 22356788888888877 6889884 222111 1121111 1 234523444
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC----CCcceeec-CCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD----GRGIYCIF-EGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~----~~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
+.++||+++|++|+||++=+-+. +..+++. ....|..- .++. .|.. ..+...
T Consensus 270 dp~~mi~~L~~~G~k~v~~i~P~-v~~~~~~y~e~~~~gy~vk~~~g~-----------------~~~~-----~~~~~~ 326 (635)
T PRK10426 270 QLDSRIKQLNEEGIQFLGYINPY-LASDGDLCEEAAEKGYLAKDADGG-----------------DYLV-----EFGEFY 326 (635)
T ss_pred CHHHHHHHHHHCCCEEEEEEcCc-cCCCCHHHHHHHHCCcEEECCCCC-----------------EEEe-----EecCCC
Confidence 57889999999999999987763 3333220 00111110 0000 0000 000011
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHH-HHHhcCCCeEEecccCCCC
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNW-LKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~-w~~~~gvDGfR~D~a~~~~ 208 (424)
..-+|+.||++++...+.++. +++ .|||||=+|.-..+|
T Consensus 327 --~~~~Dftnp~ar~Ww~~~~~~~~~~-~Gvdg~w~D~~E~~p 366 (635)
T PRK10426 327 --AGVVDLTNPEAYEWFKEVIKKNMIG-LGCSGWMADFGEYLP 366 (635)
T ss_pred --ceeecCCCHHHHHHHHHHHHHHHhh-cCCCEEeeeCCCCCC
Confidence 113788999999999998864 555 999999999866543
No 68
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=96.72 E-value=0.0058 Score=59.06 Aligned_cols=138 Identities=17% Similarity=0.249 Sum_probs=82.4
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCC--CCCCCCC-cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQS--VAPQGYM-PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~--~~~~gY~-~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+-+.+.+-++.+++.|| ++|||- .... ..+.|+. ..+ +..|+.+|- +.++||+++|++|+||++-+.+ +
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~-f~~d~~~FP---dp~~mi~~Lh~~G~~~~~~i~P-~ 94 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWN-WEWDPERYP---GLDELIEELKARGIRVLTYINP-Y 94 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeee-eEEChhhCC---CHHHHHHHHHHCCCEEEEEecC-c
Confidence 57788888998888765 678875 3311 1122332 112 355633564 5889999999999999996665 4
Q ss_pred CCCCCCCC-----CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q 014447 116 RTAERKDG-----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNW 189 (424)
Q Consensus 116 ~~~~~~~~-----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~ 189 (424)
+..+++.. ...+..-.. ++..+. ...+ ....-+|+.||++++...+.++.
T Consensus 95 v~~~~~~~y~~~~~~g~~vk~~----------------~g~~~~--------~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 150 (317)
T cd06594 95 LADDGPLYYEEAKDAGYLVKDA----------------DGSPYL--------VDFGEFDCGVLDLTNPAARDWFKQVIKE 150 (317)
T ss_pred eecCCchhHHHHHHCCeEEECC----------------CCCeee--------eccCCCCceeeecCCHHHHHHHHHHHHH
Confidence 44332210 001111000 000000 0001 11234899999999999999987
Q ss_pred HHHhcCCCeEEecccCCCC
Q 014447 190 LKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 190 w~~~~gvDGfR~D~a~~~~ 208 (424)
...+.|||||=+|+-..++
T Consensus 151 ~~~~~Gvdg~w~D~~E~~p 169 (317)
T cd06594 151 MLLDLGLSGWMADFGEYLP 169 (317)
T ss_pred HhhhcCCcEEEecCCCCCC
Confidence 7455999999999875443
No 69
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.71 E-value=0.017 Score=55.84 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=76.6
Q ss_pred HHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 43 NSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
+.+.+-++.+++.|| ++|+|-+=+... .+-.-.+ +..|+.+|- +.++||+++|++|+||++-+.+- ++.++
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~--~~~~~~~-f~~d~~~FP---dp~~mi~~L~~~g~k~~~~i~P~-i~~~~ 101 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSI--EGGKRYV-FNWNKDRFP---DPAAFVAKFHERGIRLAPNIKPG-LLQDH 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccc--CCCceee-eecCcccCC---CHHHHHHHHHHCCCEEEEEeCCc-ccCCC
Confidence 567777888888775 778875322111 0100111 344524555 57899999999999999976653 43333
Q ss_pred CC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 121 KD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 121 ~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
+. ....|+.-.. ++. .+..+..+++ ..-+|+.||++++...+.++..+.+.|
T Consensus 102 ~~y~e~~~~g~~v~~~----------------------~g~-~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 158 (317)
T cd06599 102 PRYKELKEAGAFIKPP----------------------DGR-EPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG 158 (317)
T ss_pred HHHHHHHHCCcEEEcC----------------------CCC-CcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC
Confidence 21 0111111100 000 0000111111 123889999999999999954444499
Q ss_pred CCeEEecccC
Q 014447 196 FDGWRFDFVK 205 (424)
Q Consensus 196 vDGfR~D~a~ 205 (424)
||||=+|...
T Consensus 159 vdg~w~D~~E 168 (317)
T cd06599 159 IDSTWNDNNE 168 (317)
T ss_pred CcEEEecCCC
Confidence 9999999864
No 70
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=96.27 E-value=0.016 Score=56.05 Aligned_cols=132 Identities=14% Similarity=0.183 Sum_probs=76.3
Q ss_pred cHHHHHhhhhHHHHc--CCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNA--GITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~l--Gv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+.++.+++. -+++|+|=--+- ...++ . -+..|+.+|- +.++||+++|++|+||++-+.+ +++.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~--~~~~~--~-~f~~d~~~FP---dp~~mi~~L~~~G~kv~~~i~P-~v~~ 92 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYW--PKQGW--G-EWKFDPERFP---DPKAMVRELHEMNAELMISIWP-TFGP 92 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhh--cCCCc--e-eEEEChhhCC---CHHHHHHHHHHCCCEEEEEecC-CcCC
Confidence 566788888888775 567777641110 11121 1 2345534565 4679999999999999996654 3543
Q ss_pred CCCC----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 119 ERKD----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 119 ~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
+++. .+..|+.-.. . +. .+. ..+++ ..-+|+.||++++...+.++..+.+
T Consensus 93 ~~~~y~e~~~~g~~v~~~----------------~------g~-~~~--~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 93 ETENYKEMDEKGYLIKTD----------------R------GP-RVT--MQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred CChhHHHHHHCCEEEEcC----------------C------CC-eee--eeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 3321 0111211110 0 00 000 01111 2348999999999988877643334
Q ss_pred cCCCeEEecccCC
Q 014447 194 IGFDGWRFDFVKG 206 (424)
Q Consensus 194 ~gvDGfR~D~a~~ 206 (424)
.|||||=+|....
T Consensus 148 ~Gvdg~w~D~~Ep 160 (319)
T cd06591 148 KGVDAWWLDAAEP 160 (319)
T ss_pred CCCcEEEecCCCC
Confidence 9999999999753
No 71
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=96.07 E-value=0.057 Score=56.98 Aligned_cols=130 Identities=16% Similarity=0.150 Sum_probs=74.6
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC----CCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ----GYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~----gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
-+.|.+.|+.||++|+|+|+|--+....++. -|-|.++...-.+-|. -+.-. .+|++|++|..=+.+=-.+
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r~d~f~---~~aw~--l~~r~~v~v~AWmp~~~~~ 407 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMRADLFN---RVAWQ--LRTRAGVNVYAWMPVLSFD 407 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccccCCcC---HHHHH--HHHhhCCEEEEeccceeec
Confidence 5678888999999999999998765432221 2333322211112222 12222 2899999998766554332
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
...............+.....++| ...|+-.+|+||+.|.+++.-++..+.||
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~rl~P~~pe~r~~i~~i~~dla~~~~~d 460 (671)
T PRK14582 408 LDPTLPRVKRLDTGEGKAQIHPEQ---------------------------YRRLSPFDDRVRAQVGMLYEDLAGHAAFD 460 (671)
T ss_pred cCCCcchhhhccccCCccccCCCC---------------------------CcCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 211000000000000000000000 11288999999999999999999978999
Q ss_pred eEEecc
Q 014447 198 GWRFDF 203 (424)
Q Consensus 198 GfR~D~ 203 (424)
|+-+|-
T Consensus 461 Gilf~D 466 (671)
T PRK14582 461 GILFHD 466 (671)
T ss_pred eEEecc
Confidence 999985
No 72
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=96.04 E-value=0.023 Score=54.89 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=79.2
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+-++.+++.|| +.|||-.=+ ..+|.. +..|+.+|- +.++||+++|++|+||++=+.+. .+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---dp~~~i~~l~~~g~k~~~~~~P~-i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHY----MDSYRL---FTWDPYRFP---EPKKLIDELHKRNVKLVTIVDPG-IRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhh----hCCCCc---eeechhcCC---CHHHHHHHHHHCCCEEEEEeecc-ccC
Confidence 46677788888877664 677765311 123322 344523554 57899999999999999976653 433
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+.. +..|..+.. ..+ + +.. ..+....+..|++ ..-+|+.||++++...+.++..+.+.|||
T Consensus 91 ~~~-----~~~~~~~~~---~~~---~-v~~------~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvd 152 (317)
T cd06600 91 DQN-----YSPFLSGMD---KGK---F-CEI------ESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVD 152 (317)
T ss_pred CCC-----ChHHHHHHH---CCE---E-EEC------CCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCc
Confidence 221 111111000 000 0 000 0000000111111 12379999999999999999888669999
Q ss_pred eEEecccCC
Q 014447 198 GWRFDFVKG 206 (424)
Q Consensus 198 GfR~D~a~~ 206 (424)
||=+|....
T Consensus 153 g~w~D~~Ep 161 (317)
T cd06600 153 GIWLDMNEP 161 (317)
T ss_pred eEEeeCCCC
Confidence 999998764
No 73
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.00 E-value=0.021 Score=60.60 Aligned_cols=131 Identities=13% Similarity=0.169 Sum_probs=73.8
Q ss_pred HHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 44 SLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 44 gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
.+.+-++.+++.|| ++|++-..+. .+|.-.+ +..|+.+|- +.+.||+++|++|+||++=+.+ +.+.+++
T Consensus 284 ~v~~~~~~~r~~~iP~d~i~lD~~w~----~~~~~~~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~i~P-~i~~~s~ 354 (665)
T PRK10658 284 TVNSFIDGMAERDLPLHVFHFDCFWM----KEFQWCD-FEWDPRTFP---DPEGMLKRLKAKGLKICVWINP-YIAQKSP 354 (665)
T ss_pred HHHHHHHHHHHcCCCceEEEEchhhh----cCCceee-eEEChhhCC---CHHHHHHHHHHCCCEEEEeccC-CcCCCch
Confidence 45555566666554 4455433221 1222122 234423343 4678999999999999997766 3443332
Q ss_pred C----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 014447 122 D----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLKTEIGF 196 (424)
Q Consensus 122 ~----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~~~~gv 196 (424)
. ....|+.-.. ++..|. +..| ....-+|+.||++|+...+.++.+++ .||
T Consensus 355 ~f~e~~~~gy~vk~~----------------~G~~~~--------~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gv 409 (665)
T PRK10658 355 LFKEGKEKGYLLKRP----------------DGSVWQ--------WDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGV 409 (665)
T ss_pred HHHHHHHCCeEEECC----------------CCCEee--------eeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCC
Confidence 1 0111211000 000000 0001 12223889999999999999999988 999
Q ss_pred CeEEecccCCCC
Q 014447 197 DGWRFDFVKGYA 208 (424)
Q Consensus 197 DGfR~D~a~~~~ 208 (424)
|||-.|....+|
T Consensus 410 dgfw~D~gE~~p 421 (665)
T PRK10658 410 DCFKTDFGERIP 421 (665)
T ss_pred cEEEecCCceee
Confidence 999999765444
No 74
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=95.97 E-value=0.025 Score=54.76 Aligned_cols=134 Identities=16% Similarity=0.153 Sum_probs=78.2
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCC-C-CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSV-A-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~-~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-..+.+.++.+++.| ++.|+|-.=+-.. . ...|. + +..|+.+|- +.++||+++|++|+||++=+.+ ++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~--~-f~wd~~~FP---dp~~mi~~L~~~G~k~~~~v~P-~v 94 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMG--N-LDWDRKAFP---DPAGMIADLAKKGVKTIVITEP-FV 94 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCcee--e-eEeccccCC---CHHHHHHHHHHcCCcEEEEEcC-cc
Confidence 3567788888888766 4677775422110 0 11122 2 344535675 4578999999999999998865 34
Q ss_pred CCCCCCC----CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHH
Q 014447 117 TAERKDG----RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF-QPAPDIDHLNPRVQKELSDWMNWLK 191 (424)
Q Consensus 117 ~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dln~~np~v~~~l~~~~~~w~ 191 (424)
+.+++.. ...+..... .+...+ ....| ....-+|+.||++++...+.++.+.
T Consensus 95 ~~~~~~y~e~~~~g~l~~~~---------------~~~~~~--------~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (317)
T cd06598 95 LKNSKNWGEAVKAGALLKKD---------------QGGVPT--------LFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI 151 (317)
T ss_pred cCCchhHHHHHhCCCEEEEC---------------CCCCEe--------eeeccCCCccccCCCCHHHHHHHHHHHHHhh
Confidence 4333210 011100000 000000 00000 0112367899999999999999887
Q ss_pred HhcCCCeEEecccC
Q 014447 192 TEIGFDGWRFDFVK 205 (424)
Q Consensus 192 ~~~gvDGfR~D~a~ 205 (424)
+ .|||||=+|...
T Consensus 152 ~-~Gvdg~w~D~~E 164 (317)
T cd06598 152 D-QGVTGWWGDLGE 164 (317)
T ss_pred h-CCccEEEecCCC
Confidence 6 999999999875
No 75
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=95.75 E-value=0.082 Score=56.27 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=39.4
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ 67 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~ 67 (424)
+++.|+|...|..+ |+|||.++.+-++.+++.|.+.+.|+|++.
T Consensus 145 Gv~~qlySLrs~~~~GIGDfgdl~~l~d~~a~~G~~~~qlnPlha 189 (695)
T PRK11052 145 GACVQLYTLRSEHNWGIGDFGDLKQMLEDVAKRGGDFIGLNPIHA 189 (695)
T ss_pred EEEeccccCCCCCCCCeecHHHHHHHHHHHHHcCCCEEEECCCCc
Confidence 69999998888655 579999999999999999999999999993
No 76
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=95.62 E-value=0.052 Score=52.99 Aligned_cols=141 Identities=19% Similarity=0.305 Sum_probs=78.4
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHH--HHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADL--KSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl--~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+-+.+.+.++.+++.|| +.|||-.=+. .++. + +..|+.+|- +. ++||+++|++|+||++=+.+. +
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~----~~~~--~-f~~d~~~FP---dp~~~~mi~~L~~~G~k~~~~i~P~-v 90 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYM----DRRR--D-FTLDPVRFP---GLKMPEFVDELHANGQHYVPILDPA-I 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccc----cCcc--c-eecccccCC---CccHHHHHHHHHHCCCEEEEEEeCc-c
Confidence 35678888888887664 6777643221 1121 1 334422343 34 899999999999999976653 3
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
..+.. ...+..|..+..... + +.+ ..+....+..|++ ..-+|+.||++++...+.++.++++.|
T Consensus 91 ~~~~~--~~~~~~~~e~~~~g~------~-v~~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 155 (339)
T cd06602 91 SANEP--TGSYPPYDRGLEMDV------F-IKN------DDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP 155 (339)
T ss_pred ccCcC--CCCCHHHHHHHHCCe------E-EEC------CCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 33210 011111211100000 0 000 0000000011111 122689999999999999998887799
Q ss_pred CCeEEecccCCC
Q 014447 196 FDGWRFDFVKGY 207 (424)
Q Consensus 196 vDGfR~D~a~~~ 207 (424)
||||=+|.....
T Consensus 156 vdg~w~D~~Ep~ 167 (339)
T cd06602 156 FDGLWIDMNEPS 167 (339)
T ss_pred CcEEEecCCCCc
Confidence 999999987643
No 77
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=95.45 E-value=0.022 Score=55.66 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=41.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
++....+.|.-.++.|++.|+.+= + .+....=...+.|++|++.||+.||+||+|+-+.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL-~--------------ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~ 70 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSL-H--------------IPEDDPEDYLERLKELLKLAKELGMEVIADISPK 70 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE------------------------HHHHHHHHHHHHHHCT-EEEEEE-CC
T ss_pred CHHHHHHHHHHHHHCCCCEEECCC-C--------------cCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHH
Confidence 677888888888999999999761 1 1110111236889999999999999999999775
No 78
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=95.37 E-value=0.033 Score=59.17 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=64.3
Q ss_pred CCCCCCceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC------CCCCCcccccCCCCCCCCCH
Q 014447 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~ 90 (424)
+.|-+.+|..|+|...|..+ |+|||.++.+-++.+++.|.+.|+|+|+..... +..|++.+-+.+| |-|=+.
T Consensus 57 ~~~R~aGill~l~SLrS~~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlN-PlyIdl 135 (745)
T PLN03236 57 GAWKGSGMALPVFSLRSAESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALH-PLYLKL 135 (745)
T ss_pred cchhhheeeeccccCCCCCCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccC-hHHcCH
Confidence 56778899999999888765 469999999999999999999999999988641 2479999999999 888777
Q ss_pred HHHH
Q 014447 91 ADLK 94 (424)
Q Consensus 91 edl~ 94 (424)
+.+.
T Consensus 136 e~L~ 139 (745)
T PLN03236 136 KELV 139 (745)
T ss_pred HHhh
Confidence 6663
No 79
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=95.25 E-value=0.057 Score=52.77 Aligned_cols=135 Identities=19% Similarity=0.334 Sum_probs=77.9
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.+.+.++.+++.|| ++|||-+-+.. +|.. +..|+.+|- +.++|++++|++|+||++=+.+ ++..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~---f~~d~~~fP---dp~~m~~~l~~~g~~~~~~~~P-~v~~ 90 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRV---FTWDKERFP---DPKELIKELHEQGFKVVTIIDP-GVKV 90 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCc---eeeccccCC---CHHHHHHHHHHCCCEEEEEEeC-ceeC
Confidence 45677888888888775 67777543322 3322 345523564 4689999999999999987655 3322
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+.. +..|..+.. .++ +. .+ ..+....+..|++ ..-+|+.||++++...+.++.+.+ .|||
T Consensus 91 ~~~-----~~~~~e~~~---~g~---~v-~~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~-~Gvd 151 (339)
T cd06604 91 DPG-----YDVYEEGLE---NDY---FV-KD------PDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVD-LGVD 151 (339)
T ss_pred CCC-----ChHHHHHHH---CCe---EE-EC------CCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhh-CCCc
Confidence 211 111111000 000 00 00 0000000011111 112789999999999999998886 9999
Q ss_pred eEEecccC
Q 014447 198 GWRFDFVK 205 (424)
Q Consensus 198 GfR~D~a~ 205 (424)
||=+|...
T Consensus 152 g~w~D~~E 159 (339)
T cd06604 152 GIWNDMNE 159 (339)
T ss_pred eEeecCCC
Confidence 99999864
No 80
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.10 E-value=0.031 Score=52.64 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=49.7
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC--CCCCCcccccCCCCCCCCCHHHHHHHHHH
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA--PQGYMPGRLYDLDASKYGSQADLKSLIQA 99 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~--~~gY~~~d~~~id~~~~Gt~edl~~Lv~~ 99 (424)
+++|-.+.|+.. +. .+. -..+-++.+|++|+++|-|.-..+... ..++ .++ + ...+.|+++|++
T Consensus 5 G~~v~~~G~n~~-w~---~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~------~~~-~--~~~~~ld~~v~~ 70 (281)
T PF00150_consen 5 GKPVNWRGFNTH-WY---NPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY------NYD-E--TYLARLDRIVDA 70 (281)
T ss_dssp SEBEEEEEEEET-TS---GGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT------SBT-H--HHHHHHHHHHHH
T ss_pred CCeEEeeeeecc-cC---CCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc------ccc-H--HHHHHHHHHHHH
Confidence 345556666522 11 112 566678999999999999965432110 1111 112 1 136789999999
Q ss_pred HHHcCCEEEEeeecc
Q 014447 100 FRQKGIKCLADMVIN 114 (424)
Q Consensus 100 aH~~Gi~VilD~v~N 114 (424)
|+++||+||+|+--.
T Consensus 71 a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 71 AQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHTT-EEEEEEEES
T ss_pred HHhCCCeEEEEeccC
Confidence 999999999988654
No 81
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.073 Score=50.45 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=45.7
Q ss_pred EEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014447 27 FQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106 (424)
Q Consensus 27 ~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~ 106 (424)
+.+|+|. +.....++-|+...+.||+-|..+=...... +=+-.+-|++|++.||+.||+
T Consensus 6 fSifp~~------~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~---------------~~~~~~~~~ell~~Anklg~~ 64 (360)
T COG3589 6 FSIFPNR------SPKEKDIAYIDRMHKYGFKRIFTSLLIPEED---------------AELYFHRFKELLKEANKLGLR 64 (360)
T ss_pred EEeccCC------CcchhHHHHHHHHHHcCccceeeecccCCch---------------HHHHHHHHHHHHHHHHhcCcE
Confidence 3456654 3455666777777889999988653221110 012245799999999999999
Q ss_pred EEEeeecc
Q 014447 107 CLADMVIN 114 (424)
Q Consensus 107 VilD~v~N 114 (424)
||+|+-+.
T Consensus 65 vivDvnPs 72 (360)
T COG3589 65 VIVDVNPS 72 (360)
T ss_pred EEEEcCHH
Confidence 99999875
No 82
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=95.03 E-value=0.088 Score=56.72 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCEEEEeeecccCCCCCCC-----CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 92 DLKSLIQAFRQKGIKCLADMVINHRTAERKD-----GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~-----~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
+.++|++.+|++|||+|+=+.|. ...+++. ..+-+..-+ .+......+|
T Consensus 322 ~pk~mi~~l~~~Gikl~~~i~P~-i~~d~~~~~e~~~~Gy~~k~~-------------------------~g~~~~~~~w 375 (772)
T COG1501 322 DPKQMIAELHEKGIKLIVIINPY-IKQDSPLFKEAIEKGYFVKDP-------------------------DGEIYQADFW 375 (772)
T ss_pred CHHHHHHHHHhcCceEEEEeccc-cccCCchHHHHHHCCeEEECC-------------------------CCCEeeeccc
Confidence 45599999999999999988874 4444421 011111111 1112222233
Q ss_pred C-CCCCCCCCCHHHHHHHHH-HHHHHHHhcCCCeEEecccCCCC
Q 014447 167 Q-PAPDIDHLNPRVQKELSD-WMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 167 ~-~~~dln~~np~v~~~l~~-~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
+ ...=+|+.||++|+...+ ....+++ +|||||=.|+....+
T Consensus 376 ~~~~a~~DFtnp~~r~Ww~~~~~~~l~d-~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 376 PGNSAFPDFTNPDAREWWASDKKKNLLD-LGVDGFWNDMNEPEP 418 (772)
T ss_pred CCcccccCCCCHHHHHHHHHHHHhHHHh-cCccEEEccCCCCcc
Confidence 2 233488999999999995 5567887 999999999976553
No 83
>PLN02950 4-alpha-glucanotransferase
Probab=95.01 E-value=0.065 Score=58.73 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=64.5
Q ss_pred CCCCCCceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC------CCCCCcccccCCCCCCCCCH
Q 014447 18 LPFTSPALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA------PQGYMPGRLYDLDASKYGSQ 90 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~------~~gY~~~d~~~id~~~~Gt~ 90 (424)
|.|-+.+|..|+|...|..+ |+|||.++.+-+|.+++.|.+.|+|+|+..... +..|++.+-+.+| |-|=+.
T Consensus 257 ~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S~falN-PlyI~l 335 (909)
T PLN02950 257 MPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLSVFALH-PLYLRV 335 (909)
T ss_pred CCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCcccccccC-hhhcCH
Confidence 55667789999998887764 579999999999999999999999999988642 2379999999999 988887
Q ss_pred HHHHH
Q 014447 91 ADLKS 95 (424)
Q Consensus 91 edl~~ 95 (424)
+++-.
T Consensus 336 ~~l~~ 340 (909)
T PLN02950 336 QALSE 340 (909)
T ss_pred HHHHh
Confidence 76643
No 84
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=94.97 E-value=0.04 Score=55.89 Aligned_cols=139 Identities=20% Similarity=0.382 Sum_probs=75.7
Q ss_pred cHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.|| ++++|-.-+.. +|. + +..|+.+|- +.++|++.+|++|++|++-+.+ ++..
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~----~~~--~-f~~d~~~FP---d~~~~~~~l~~~G~~~~~~~~P-~v~~ 109 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD----GYG--D-FTWDPERFP---DPKQMIDELHDQGIKVVLWVHP-FVSN 109 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB----TTB--T-T-B-TTTTT---THHHHHHHHHHTT-EEEEEEES-EEET
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc----ccc--c-ccccccccc---chHHHHHhHhhCCcEEEEEeec-ccCC
Confidence 45677788888887665 55665433211 222 2 245523454 7899999999999999999888 3443
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
+++ .+..|..... .++. . . +..+....+..|+ ...-+|+.||++++...+.++.+++.+|||
T Consensus 110 ~~~----~~~~~~~~~~---~~~~---v-~------~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd 172 (441)
T PF01055_consen 110 DSP----DYENYDEAKE---KGYL---V-K------NPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD 172 (441)
T ss_dssp TTT----B-HHHHHHHH---TT-B---E-B------CTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S
T ss_pred CCC----cchhhhhHhh---cCce---e-e------cccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc
Confidence 332 0111111000 0000 0 0 0000000000011 122378999999999999999999867999
Q ss_pred eEEecccCCC
Q 014447 198 GWRFDFVKGY 207 (424)
Q Consensus 198 GfR~D~a~~~ 207 (424)
||-+|.....
T Consensus 173 g~w~D~~E~~ 182 (441)
T PF01055_consen 173 GWWLDFGEPS 182 (441)
T ss_dssp EEEEESTTTB
T ss_pred eEEeecCCcc
Confidence 9999995544
No 85
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=94.74 E-value=0.15 Score=47.53 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
++++.++.++.+|++|+||++=+--+|.+...
T Consensus 49 ~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~------------------------------------------------ 80 (255)
T cd06542 49 LLTNKETYIRPLQAKGTKVLLSILGNHLGAGF------------------------------------------------ 80 (255)
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc------------------------------------------------
Confidence 46889999999999999999987655442110
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
....+++-++.+.+.+..+++++|.||+=+|-
T Consensus 81 ---~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 81 ---ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred ---cccCCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 01234556777777777777779999999985
No 86
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=94.63 E-value=0.25 Score=52.42 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=83.3
Q ss_pred CcHHHHHhhhhHHHHcCCC--EEEeCCCCCCCCCCCCC--cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 40 GWYNSLKNSIPDLSNAGIT--HVWLPPPSQSVAPQGYM--PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~--~I~l~Pi~~~~~~~gY~--~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.+..+++..++.+++||. .+| .+--|. -.||+ +|+..|++ ++.+++.+|++|+|+|+=+-++-
T Consensus 308 ~nls~~~dvv~~~~~agiPld~~~--------~DiDyMd~ykDFT-vd~~~fp~---~~~fv~~Lh~~G~kyvliidP~i 375 (805)
T KOG1065|consen 308 KNLSVVRDVVENYRAAGIPLDVIV--------IDIDYMDGYKDFT-VDKVWFPD---LKDFVDDLHARGFKYVLIIDPFI 375 (805)
T ss_pred ccHHHHHHHHHHHHHcCCCcceee--------eehhhhhccccee-eccccCcc---hHHHHHHHHhCCCeEEEEeCCcc
Confidence 5688888999999888884 433 222233 44544 45366776 99999999999999987665431
Q ss_pred CCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 116 RTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP-APDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
. .+. .|.+|..+..... |.... ++... ..+..|++ ..=+|+.||++.....+.++.+-++.
T Consensus 376 s-~~~-----~y~~y~~g~~~~v--~I~~~---------~g~~~-~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~v 437 (805)
T KOG1065|consen 376 S-TNS-----SYGPYDRGVAKDV--LIKNR---------EGSPK-MLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEV 437 (805)
T ss_pred c-cCc-----cchhhhhhhhhce--eeecc---------cCchh-hhcccCCCcccccccCCchHHHHHHHHHHhhcccC
Confidence 1 111 1333333211100 10000 01000 22333333 22267899999999999999888899
Q ss_pred CCCeEEeccc
Q 014447 195 GFDGWRFDFV 204 (424)
Q Consensus 195 gvDGfR~D~a 204 (424)
++|||-+|+-
T Consensus 438 p~dg~wiDmn 447 (805)
T KOG1065|consen 438 PFDGFWIDMN 447 (805)
T ss_pred CccceEEECC
Confidence 9999999994
No 87
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=94.20 E-value=0.12 Score=55.09 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=34.9
Q ss_pred CcHHHHHhhhhHHH--HcCCCEEE-eCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHH
Q 014447 40 GWYNSLKNSIPDLS--NAGITHVW-LPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLI 97 (424)
Q Consensus 40 G~~~gi~~~L~ylk--~lGv~~I~-l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv 97 (424)
|++..+++.+.... -.|++=|. +.|.... ....|++.+-+.+| |-|=+.+++-++.
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p~-~~SPYsp~Sr~alN-PlyI~~e~l~e~~ 223 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANPE-SASPYSPSSRRWLN-VIYIDVNAVEDFQ 223 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCCC-CCCCcccccccccC-hHHcCHHHHhhhh
Confidence 45666666665332 24455555 3343222 45679999999999 8888877776654
No 88
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.02 E-value=0.14 Score=48.89 Aligned_cols=129 Identities=13% Similarity=0.175 Sum_probs=72.6
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCC-CC----CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQS-VA----PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~-~~----~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+-..+.+-++.+++.| +++|+|=.=+.. .. ..+|. -++.|+.+|- |.++||+++|++|+|||+-+.+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~---~ft~d~~~FP---dp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWT---GYSWNRKLFP---DPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcc---eeEEChhcCC---CHHHHHHHHHHCCCEEEEEeCC
Confidence 4677888888887755 466766221111 00 11222 2345534564 6789999999999999998877
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHH
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMN-WLKT 192 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~-~w~~ 192 (424)
.. +.+.. ...|..+..+. .- .... ....-+|+.||+.++...+.+. .+.+
T Consensus 97 ~~-~~~~~--~~~y~~~~~~~-----~~----------~~~~-----------~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 97 AD-GIRAH--EDQYPEMAKAL-----GV----------DPAT-----------EGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred Cc-ccCCC--cHHHHHHHHhc-----CC----------Cccc-----------CCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 42 21110 00111111100 00 0000 0112378999998887666654 4555
Q ss_pred hcCCCeEEecccC
Q 014447 193 EIGFDGWRFDFVK 205 (424)
Q Consensus 193 ~~gvDGfR~D~a~ 205 (424)
.|||||=.|.-.
T Consensus 148 -~Gidg~W~D~~E 159 (292)
T cd06595 148 -QGVDFWWLDWQQ 159 (292)
T ss_pred -cCCcEEEecCCC
Confidence 999999999643
No 89
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=93.51 E-value=0.22 Score=48.16 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=36.9
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
.+.++.||+.|+|+|-|=- +..|.. .-+-+.++..++.++|++.||+|+||+=+..+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv~P~~-------------~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~ 83 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WVNPYD-------------GGYNDLEDVIALAKRAKAAGMKVLLDFHYSDF 83 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--SS-TT-------------TTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS
T ss_pred CCHHHHHHhcCCCeEEEEe-ccCCcc-------------cccCCHHHHHHHHHHHHHCCCeEEEeecccCC
Confidence 4678899999999998742 222222 12235789999999999999999999965443
No 90
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=93.05 E-value=0.86 Score=43.72 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=69.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC--CCCCCCHHHHHHHHHHHHHcCCEEEEeee-cccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD--ASKYGSQADLKSLIQAFRQKGIKCLADMV-INHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id--~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~NH~~ 117 (424)
+..-|.+-++.++.+|+|.++|==- +.|...++-.+. ...| |.+|++++++-|.++||.||-.+- +-|+.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~------D~f~~~~~p~~~~~~~~y-T~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYE------DTFPYEGEPEVGRMRGAY-TKEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEe------cceecCCCcccccCCCCc-CHHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 4677888999999999999998310 011111122222 0222 689999999999999999996542 45553
Q ss_pred CCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 014447 118 AERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIG 195 (424)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~g 195 (424)
.--+ +..+. ...+. . ..--.||..+|++.+.+.+.+...++-+.
T Consensus 88 ~~l~-----~~~~~--------------~l~~~-----~----------~~~~~l~~~~~~t~~fi~~li~ev~~~f~ 131 (301)
T cd06565 88 FILK-----HPEFR--------------HLREV-----D----------DPPQTLCPGEPKTYDFIEEMIRQVLELHP 131 (301)
T ss_pred HHHh-----Ccccc--------------ccccc-----C----------CCCCccCCCChhHHHHHHHHHHHHHHhCC
Confidence 2100 00000 00000 0 00113899999999999999998887544
No 91
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=92.70 E-value=0.17 Score=50.16 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=67.6
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC--HHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS--QADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt--~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
..+.+-|.-+|++|||+|-|..+. ...+. |.=|. -+.|.++++.|+++||+|||-+.. +..
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~------------W~~lE-P~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~-~~~--- 72 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFS------------WSWLE-PEEGQYDFSWLDRVLDLAAKHGIKVILGTPT-AAP--- 72 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCE------------HHHH--SBTTB---HHHHHHHHHHHCTT-EEEEEECT-TTS---
T ss_pred HHHHHHHHHHHHcCCCEEEEEEec------------hhhcc-CCCCeeecHHHHHHHHHHHhccCeEEEEecc-ccc---
Confidence 456678899999999999987653 12222 22221 446889999999999999997762 221
Q ss_pred CCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc----CC
Q 014447 121 KDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI----GF 196 (424)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~----gv 196 (424)
..|.. ... ++... .+..+.. .........++.+|..|+++.+.++.+++.+ .|
T Consensus 73 ----P~Wl~--~~~----Pe~~~----------~~~~g~~---~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~v 129 (374)
T PF02449_consen 73 ----PAWLY--DKY----PEILP----------VDADGRR---RGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAV 129 (374)
T ss_dssp -----HHHH--CCS----GCCC-----------B-TTTSB---EECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred ----ccchh--hhc----ccccc----------cCCCCCc---CccCCccccchhHHHHHHHHHHHHHHHHhhccccceE
Confidence 11211 000 00000 0000000 0112223367789999998888876666544 46
Q ss_pred CeEEecccC
Q 014447 197 DGWRFDFVK 205 (424)
Q Consensus 197 DGfR~D~a~ 205 (424)
-|+-+|.=.
T Consensus 130 i~~~i~NE~ 138 (374)
T PF02449_consen 130 IGWQIDNEP 138 (374)
T ss_dssp EEEEECCST
T ss_pred EEEEecccc
Confidence 788888743
No 92
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=92.50 E-value=0.45 Score=46.26 Aligned_cols=110 Identities=15% Similarity=0.235 Sum_probs=72.0
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.+ +++|||=.=+. .+|. .+..|+.+|-. .++|++++|++|+|||+-+.+- ...
T Consensus 22 ~~~ev~~v~~~~r~~~IP~D~i~lDidy~----~~~~---~Ft~d~~~FPd---p~~mv~~L~~~G~klv~~i~P~-i~~ 90 (332)
T cd06601 22 NRSDLEEVVEGYRDNNIPLDGLHVDVDFQ----DNYR---TFTTNGGGFPN---PKEMFDNLHNKGLKCSTNITPV-ISY 90 (332)
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEcCchh----cCCC---ceeecCCCCCC---HHHHHHHHHHCCCeEEEEecCc-eec
Confidence 4566777777777755 46677653221 2332 24455346653 5789999999999999887652 210
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
+ ..|. +. ... .|+.||++|+.-.+..+.+.+ .||||
T Consensus 91 --------------g-----~~~~-------------~~---------~~~--pDftnp~ar~wW~~~~~~l~~-~Gv~~ 126 (332)
T cd06601 91 --------------G-----GGLG-------------SP---------GLY--PDLGRPDVREWWGNQYKYLFD-IGLEF 126 (332)
T ss_pred --------------C-----ccCC-------------CC---------cee--eCCCCHHHHHHHHHHHHHHHh-CCCce
Confidence 0 0010 00 011 567899999999888888887 89999
Q ss_pred EEecccC
Q 014447 199 WRFDFVK 205 (424)
Q Consensus 199 fR~D~a~ 205 (424)
|=.|+..
T Consensus 127 ~W~DmnE 133 (332)
T cd06601 127 VWQDMTT 133 (332)
T ss_pred eecCCCC
Confidence 9999863
No 93
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=92.07 E-value=0.35 Score=53.17 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=73.1
Q ss_pred HHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 42 YNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
-+.+.+-++.+++.|| ++|||--= .-.||.. +..|+.+|- +.++|++++|++|+|++.=+.+ ++..+
T Consensus 200 q~eV~eva~~fre~~IP~DvIwlDid----Ym~g~~~---FTwD~~rFP---dP~~mv~~Lh~~G~kvv~iidP-gI~~d 268 (978)
T PLN02763 200 AKRVAEIARTFREKKIPCDVVWMDID----YMDGFRC---FTFDKERFP---DPKGLADDLHSIGFKAIWMLDP-GIKAE 268 (978)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEehh----hhcCCCc---eeECcccCC---CHHHHHHHHHHCCCEEEEEEcC-CCccC
Confidence 4455555666655443 45554311 1123332 345533564 5689999999999999865433 22211
Q ss_pred CCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHhcCCCe
Q 014447 120 RKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAP-DIDHLNPRVQKELSDWMNWLKTEIGFDG 198 (424)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dln~~np~v~~~l~~~~~~w~~~~gvDG 198 (424)
..|..+..+.... .| +. +..+....+..|++.. =.|+.||++|+...+.++.+++ .||||
T Consensus 269 -----~gY~~y~eg~~~~--~f-----vk------~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d-~GVDG 329 (978)
T PLN02763 269 -----EGYFVYDSGCEND--VW-----IQ------TADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS-NGVDG 329 (978)
T ss_pred -----CCCHHHHhHhhcC--ee-----EE------CCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc-CCCcE
Confidence 1233232211000 00 00 0001111122232221 1588999999999999999988 99999
Q ss_pred EEecccC
Q 014447 199 WRFDFVK 205 (424)
Q Consensus 199 fR~D~a~ 205 (424)
|=+|+-.
T Consensus 330 ~W~DmnE 336 (978)
T PLN02763 330 IWNDMNE 336 (978)
T ss_pred EEccCCC
Confidence 9999843
No 94
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.01 E-value=1.4 Score=41.30 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=44.1
Q ss_pred CcHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccc-cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+-+.+.+.++.+++.| +++|+|-.-+.. +| .++ ...|+.+|- +.++||+++|++|++|++-+.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~----~~--~~f~~~~d~~~Fp---dp~~~i~~l~~~g~~~~~~~~P 88 (265)
T cd06589 21 GDQDKVLEVIDGMRENDIPLDGFVLDDDYTD----GY--GDFTFDWDAGKFP---NPKSMIDELHDNGVKLVLWIDP 88 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCccEEEECccccc----CC--ceeeeecChhhCC---CHHHHHHHHHHCCCEEEEEeCh
Confidence 45678888888888754 568887654332 22 222 245524565 4688999999999999996654
No 95
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=91.88 E-value=0.5 Score=46.15 Aligned_cols=136 Identities=15% Similarity=0.187 Sum_probs=77.1
Q ss_pred cHHHHHhhhhHHHHcC--CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 41 WYNSLKNSIPDLSNAG--ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lG--v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-..+.+-++.+++.| ++.|+|-.=+ ..+|.. +..|+.+|- +.+.||+++|++|+||++-+.+- +..
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~----~~~~~~---f~~d~~~FP---dp~~mi~~L~~~G~k~~~~~~P~-v~~ 90 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH----TDGKRY---FTWDKKKFP---DPEKMQEKLASKGRKLVTIVDPH-IKR 90 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH----hCCCCc---eEeCcccCC---CHHHHHHHHHHCCCEEEEEecCc-eec
Confidence 4567888888887755 4667765321 123332 455633565 56899999999999999988764 322
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHH--hcC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ-PAPDIDHLNPRVQKELSDWMNWLKT--EIG 195 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dln~~np~v~~~l~~~~~~w~~--~~g 195 (424)
+.. +..|..+.. .++. +.+ ..+....+..|+ ...-+|+.||++++...+.++.... ..|
T Consensus 91 ~~~-----~~~y~e~~~---~g~~----vk~------~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g 152 (339)
T cd06603 91 DDG-----YYVYKEAKD---KGYL----VKN------SDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTE 152 (339)
T ss_pred CCC-----CHHHHHHHH---CCeE----EEC------CCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCC
Confidence 210 111111000 0000 000 000000000111 1123889999999999999988774 368
Q ss_pred CCeEEecccC
Q 014447 196 FDGWRFDFVK 205 (424)
Q Consensus 196 vDGfR~D~a~ 205 (424)
+|||=+|+..
T Consensus 153 ~~g~w~D~~E 162 (339)
T cd06603 153 NLYIWNDMNE 162 (339)
T ss_pred CceEEeccCC
Confidence 9999888753
No 96
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=91.71 E-value=4.2 Score=41.70 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=31.0
Q ss_pred eEEEeecCCCCCC-CCCcHHHHHhhhhHH-HHcCCCEEEeCCCCCC
Q 014447 25 LLFQGFNWESSNK-AGGWYNSLKNSIPDL-SNAGITHVWLPPPSQS 68 (424)
Q Consensus 25 v~~~~f~~ds~~~-~~G~~~gi~~~L~yl-k~lGv~~I~l~Pi~~~ 68 (424)
+.+|.+.-.+.+. |+|||.++.-.+.-. ..-|.+.+.|+|++..
T Consensus 16 ~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~ 61 (520)
T COG1640 16 SGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHAT 61 (520)
T ss_pred ceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcc
Confidence 3444444222222 489999999987655 5999999999999863
No 97
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.44 E-value=0.45 Score=46.87 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
..+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 91 l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 91 ISNPTYRTQWIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCeEEEccc
Confidence 4578899999888888888899999999963
No 98
>smart00632 Aamy_C Aamy_C domain.
Probab=91.23 E-value=0.3 Score=36.83 Aligned_cols=23 Identities=9% Similarity=0.063 Sum_probs=19.0
Q ss_pred ecCCCEEEEEECCEEEEEECCCC
Q 014447 377 ASDADVYIAAIGDRVIMKIGPKM 399 (424)
Q Consensus 377 ~~~~~v~~~~r~~~~lv~ln~~~ 399 (424)
..++++++|+|+++.+|++|+..
T Consensus 5 ~~~~~~laF~Rg~~g~VaiN~~~ 27 (81)
T smart00632 5 DNGDNQIAFERGSKGFVAINRSD 27 (81)
T ss_pred ECCCeEEEEECCCeEEEEEECCC
Confidence 34455999999999999999853
No 99
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.19 E-value=0.86 Score=42.65 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=35.1
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHH---HHHHHHHHHcCCEEEEeeec
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADL---KSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl---~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.|.-||+-||++|-|= |+..| .+.| + +-.|+..|+ .++.++|++.||||++|+-.
T Consensus 66 qD~~~iLK~~GvNyvRlR-vwndP~dsng---------n-~yggGnnD~~k~ieiakRAk~~GmKVl~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLR-VWNDPYDSNG---------N-GYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEE-EecCCccCCC---------C-ccCCCcchHHHHHHHHHHHHhcCcEEEeeccc
Confidence 346788999999998773 22222 1111 1 222333444 45567788899999999844
No 100
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=91.11 E-value=1 Score=43.38 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCC
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQ 167 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (424)
.+.+++++-|++||++|+||++-+ +.... .
T Consensus 57 ~~~~~~~~~i~~~q~~G~KVllSi-----GG~~~-------------------------------------~-------- 86 (312)
T cd02871 57 YSPAEFKADIKALQAKGKKVLISI-----GGANG-------------------------------------H-------- 86 (312)
T ss_pred CChHHHHHHHHHHHHCCCEEEEEE-----eCCCC-------------------------------------c--------
Confidence 356789999999999999999865 21000 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 168 PAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 168 ~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
....++.-|+.+.+.+..+++++|+||+-+|-=
T Consensus 87 ----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E 119 (312)
T cd02871 87 ----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119 (312)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 113456678888888888888899999999963
No 101
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=91.04 E-value=0.87 Score=42.42 Aligned_cols=30 Identities=23% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.+|+.|+.+++.+..+++++|.||+-+|-=
T Consensus 79 ~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE 108 (253)
T cd06545 79 NDPAKRKALVDKIINYVVSYNLDGIDVDLE 108 (253)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCceeEEee
Confidence 578889999998888888899999999973
No 102
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=90.71 E-value=0.9 Score=43.62 Aligned_cols=40 Identities=18% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 166 FQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 166 ~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
|++.-.+|+++|+.++.|.+.+...++ .|+|||-+|.+..
T Consensus 132 W~g~~~vd~~~~~W~~il~~rl~~l~~-kGfDGvfLD~lDs 171 (315)
T TIGR01370 132 WPGNYDVKYWDPEWKAIAFSYLDRVIA-QGFDGVYLDLIDA 171 (315)
T ss_pred CCCceeEecccHHHHHHHHHHHHHHHH-cCCCeEeeccchh
Confidence 334445899999999999999887776 9999999998654
No 103
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=90.65 E-value=2.4 Score=41.57 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=72.3
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCC------CCCCCCHHHHHHHHHHHHHcCCEEEEeee-c
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLD------ASKYGSQADLKSLIQAFRQKGIKCLADMV-I 113 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id------~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~ 113 (424)
...|.+-|+.++..++|.+++- -+. .++.+.+..|-.+- +..+=|.+|++++|+-|.++||.||-.+- |
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~H---ltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~~rgI~vIPEID~P 93 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWH---ITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYARLRGIRVIPEIDTP 93 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEe---EEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHHHcCCEEEEeccCc
Confidence 6778888899999999999873 111 12222222222222 01111799999999999999999998773 4
Q ss_pred ccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 014447 114 NHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTE 193 (424)
Q Consensus 114 NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~ 193 (424)
.|+..--.. . +. ..+.+...|.... .-...-.||..+|++.+.+.+++..+++-
T Consensus 94 GH~~a~~~~-----~--p~------------l~~~~~~~~~~~~-------~~~~~~~L~~~~~~t~~fl~~vl~E~~~l 147 (348)
T cd06562 94 GHTGSWGQG-----Y--PE------------LLTGCYAVWRKYC-------PEPPCGQLNPTNPKTYDFLKTLFKEVSEL 147 (348)
T ss_pred hhhHHHHHh-----C--hh------------hhCCCCccccccc-------cCCCCccccCCChhHHHHHHHHHHHHHHh
Confidence 566431110 0 00 0000000000000 00112248999999999999999988875
Q ss_pred cC
Q 014447 194 IG 195 (424)
Q Consensus 194 ~g 195 (424)
|.
T Consensus 148 F~ 149 (348)
T cd06562 148 FP 149 (348)
T ss_pred cC
Confidence 54
No 104
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=90.57 E-value=3 Score=40.16 Aligned_cols=125 Identities=12% Similarity=0.123 Sum_probs=70.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC----CCCCCCHHHHHHHHHHHHHcCCEEEEeee-cccC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----ASKYGSQADLKSLIQAFRQKGIKCLADMV-INHR 116 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id----~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v-~NH~ 116 (424)
...|.+.|+.++..++|.+++-=. + ..++.+.+..|-.+- ...+=|.+|++++|+-|.++||+||-.+- |-|+
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~Hlt-D-d~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~rgI~vIPEId~PGH~ 94 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLT-D-DQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDRGIRVVPEIDVPGHA 94 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEe-c-CCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHcCCEEEEeecCccch
Confidence 677888899999999998887310 0 011222222222221 01122789999999999999999997763 4566
Q ss_pred CCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhc
Q 014447 117 TAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEI 194 (424)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~ 194 (424)
..--.. +++ ...+......... + . ..-+.||..+|++.+.+.+.+..+++-|
T Consensus 95 ~a~~~~-------ype-----------l~~~~~~~~~~~~------~-~-~~~~~l~~~~p~t~~f~~~l~~E~~~lF 146 (311)
T cd06570 95 SAIAVA-------YPE-----------LASGPGPYVIERG------W-G-VFEPLLDPTNEETYTFLDNLFGEMAELF 146 (311)
T ss_pred HHHHHh-------CHH-----------hccCCCccccccc------c-c-cCCCccCCCChhHHHHHHHHHHHHHHhC
Confidence 421100 000 0000000000000 0 0 0112499999999999999998888633
No 105
>PLN03059 beta-galactosidase; Provisional
Probab=90.38 E-value=0.74 Score=49.60 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=59.0
Q ss_pred ccchhhhHhhhhccCCCCCC---ceEEE--eecCCCCCC---------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC-C
Q 014447 4 LKSFCFLSFLLAIFLPFTSP---ALLFQ--GFNWESSNK---------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ-S 68 (424)
Q Consensus 4 ~~~~~~~~~~~~~~p~~~~~---~v~~~--~f~~ds~~~---------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~-~ 68 (424)
+++|++++++....+.|+-. .|-|. .|.-|-.+- -+=.=.-..++|.-+|.+|+|+|..==++. +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~H 85 (840)
T PLN03059 6 LVVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH 85 (840)
T ss_pred eehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEeccccc
Confidence 45667776666666777633 23332 221110000 011224566888899999999998532221 1
Q ss_pred CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 69 VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 69 ~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
....| . -.|.+..||.+|++.|++.||.|||=.=+
T Consensus 86 Ep~~G--~--------~dF~G~~DL~~Fl~la~e~GLyvilRpGP 120 (840)
T PLN03059 86 EPSPG--N--------YYFEDRYDLVKFIKVVQAAGLYVHLRIGP 120 (840)
T ss_pred CCCCC--e--------eeccchHHHHHHHHHHHHcCCEEEecCCc
Confidence 11111 1 12335789999999999999999986544
No 106
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=89.82 E-value=0.48 Score=55.00 Aligned_cols=69 Identities=19% Similarity=0.219 Sum_probs=57.1
Q ss_pred ceEEEeecCCCCCC-CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC---CC--CCCCCCcccccCCCCCCCCCHHHH
Q 014447 24 ALLFQGFNWESSNK-AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ---SV--APQGYMPGRLYDLDASKYGSQADL 93 (424)
Q Consensus 24 ~v~~~~f~~ds~~~-~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~---~~--~~~gY~~~d~~~id~~~~Gt~edl 93 (424)
+++.|+|...|.+. |+|||.++.+-++.+++.|.+.|.|+|++. .. .+..|++.+-+.+| |-|=+.+++
T Consensus 174 G~~~qLYsLRS~~~~GIGDfgdL~~~~d~la~~Ga~~lqlnPLhA~~p~~p~~~SPYsp~Sr~alN-PlYIdle~l 248 (1693)
T PRK14507 174 GLAAQLYGLRSARNWGIGDFGDLGRLVRDAALRGASFLGLSPLHALFPTDPAKASPYSPSSRLFLN-TLYIDVEAV 248 (1693)
T ss_pred EEEeeeeeeeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCcCcccccccC-hHhcCHhhc
Confidence 68999998888776 479999999999999999999999999993 21 45679999988888 777665444
No 107
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=89.71 E-value=7.3 Score=36.32 Aligned_cols=123 Identities=20% Similarity=0.310 Sum_probs=77.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++-+-.++.-|.+-+++.+.+=|= +...+ ..=.+.|++|.+ .+.|.++|.=+-+-... ++.
T Consensus 29 ~ql~d~~~~~i~~~~f~llVVDps-------------~~g~~-~~~~~~eelr~~----~~gg~~pIAYlsIg~ae-~yR 89 (300)
T COG2342 29 YQLQDAYINEILNSPFDLLVVDPS-------------YCGPF-NTPWTIEELRTK----ADGGVKPIAYLSIGEAE-SYR 89 (300)
T ss_pred hhcccchHHHHhcCCCcEEEEecc-------------ccCCC-CCcCcHHHHHHH----hcCCeeEEEEEechhhh-hhh
Confidence 444457788888889998888762 22233 444568888876 66788888888876442 221
Q ss_pred CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
. | +...-...+++|-.. .++ ++.++| ...|..|+=++.+.+++..+++ .|+||.-+
T Consensus 90 ~----Y--wd~~w~~~~p~wLg~----edP---~W~Gny----------~VkYW~~eWkdii~~~l~rL~d-~GfdGvyL 145 (300)
T COG2342 90 F----Y--WDKYWLTGRPDWLGE----EDP---EWPGNY----------AVKYWEPEWKDIIRSYLDRLID-QGFDGVYL 145 (300)
T ss_pred h----H--hhhhhhcCCcccccC----CCC---CCCCCc----------eeeccCHHHHHHHHHHHHHHHH-ccCceEEE
Confidence 0 0 111001122333211 111 122232 3788999999999999999998 99999999
Q ss_pred cccCCC
Q 014447 202 DFVKGY 207 (424)
Q Consensus 202 D~a~~~ 207 (424)
|.+...
T Consensus 146 D~VD~y 151 (300)
T COG2342 146 DVVDAY 151 (300)
T ss_pred eeechH
Confidence 998654
No 108
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=89.10 E-value=0.38 Score=46.53 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
-..++|..+|.+|+|+|..-=++. +....| ..||. ...||++|++.|+++||.|||-.=+=
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g--~~df~--------g~~dl~~f~~~a~~~gl~vilrpGpy 86 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEEG--QFDFT--------GNRDLDRFLDLAQENGLYVILRPGPY 86 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBTT--B---S--------GGG-HHHHHHHHHHTT-EEEEEEES-
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCCC--ccccc--------chhhHHHHHHHHHHcCcEEEecccce
Confidence 455788999999999998743222 111111 23332 24589999999999999999886553
No 109
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=88.89 E-value=0.86 Score=43.31 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=32.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
...-+++||+||+|+|-+ |.|| |..- =....+++.+.||.||+|+-.-+++.+..
T Consensus 55 C~rDi~~l~~LgiNtIRV-----------------Y~vd-p~~n----Hd~CM~~~~~aGIYvi~Dl~~p~~sI~r~ 109 (314)
T PF03198_consen 55 CKRDIPLLKELGINTIRV-----------------YSVD-PSKN----HDECMSAFADAGIYVILDLNTPNGSINRS 109 (314)
T ss_dssp HHHHHHHHHHHT-SEEEE-----------------S----TTS------HHHHHHHHHTT-EEEEES-BTTBS--TT
T ss_pred HHHhHHHHHHcCCCEEEE-----------------EEeC-CCCC----HHHHHHHHHhCCCEEEEecCCCCccccCC
Confidence 333468999999999995 5677 6553 33344456779999999998887766543
No 110
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=88.87 E-value=3 Score=39.17 Aligned_cols=64 Identities=17% Similarity=0.029 Sum_probs=41.8
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCC-CCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQG-YMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~g-Y~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+-+......-+|+-+++|+.+|.+-=-+. .++ =...|+.... + ..++++||+=|+++|++|+|=
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~---~~~~~~~~d~~~~~-~----~~dl~elv~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWY---GWEKDDDFDFTKPI-P----DFDLPELVDYAKEKGVGIWLW 92 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCC---GS--TTT--TT-B--T----T--HHHHHHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccc---cccccccccccccC-C----ccCHHHHHHHHHHcCCCEEEE
Confidence 56899999999999999999999921111 111 1345555565 3 478999999999999999873
No 111
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=88.58 E-value=1.3 Score=40.64 Aligned_cols=45 Identities=16% Similarity=0.326 Sum_probs=37.1
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
-|++.|+|||++|+|+- | +..+. .++..++|+.+++.|++|+-.+
T Consensus 76 Yl~~~k~lGf~~IEiS~--------G-----~~~i~------~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 76 YLNECDELGFEAVEISD--------G-----SMEIS------LEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HHHHHHHcCCCEEEEcC--------C-----ccCCC------HHHHHHHHHHHHhCCCeEeccc
Confidence 35599999999999983 2 34466 8899999999999999999664
No 112
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=88.16 E-value=1.8 Score=41.53 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=70.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC----------CCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD----------ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id----------~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+...|.+-|+.++..++|.++|-=- . ..++.+....|-.+- +..+=|.+|+++||+-|.++||.||-.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~-D-~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLT-D-DQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeee-c-CCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEEe
Confidence 4677888899999999999987410 0 011122222221111 011226899999999999999999977
Q ss_pred ee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 014447 111 MV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNW 189 (424)
Q Consensus 111 ~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~ 189 (424)
+- |.|+..--.. +++ . ...|.....+. ...-.||..+|++.+.+.+.+..
T Consensus 92 iD~PGH~~a~~~~-------~p~---l-------~~~~~~~~~~~------------~~~~~l~~~~~~t~~fl~~l~~e 142 (303)
T cd02742 92 IDMPGHSTAFVKS-------FPK---L-------LTECYAGLKLR------------DVFDPLDPTLPKGYDFLDDLFGE 142 (303)
T ss_pred ccchHHHHHHHHh-------CHH---h-------ccCccccCCCC------------CCCCccCCCCccHHHHHHHHHHH
Confidence 63 4566421100 000 0 00000000000 01124899999999999999999
Q ss_pred HHHhc
Q 014447 190 LKTEI 194 (424)
Q Consensus 190 w~~~~ 194 (424)
+++-+
T Consensus 143 ~~~lf 147 (303)
T cd02742 143 IAELF 147 (303)
T ss_pred HHHhC
Confidence 88744
No 113
>TIGR03356 BGL beta-galactosidase.
Probab=87.94 E-value=1.8 Score=43.62 Aligned_cols=65 Identities=11% Similarity=0.215 Sum_probs=45.2
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+.-..+-++-+|+||++++-++=-+.-.-..|-. .+| -...+-++++|++|+++||++|+++.
T Consensus 51 d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-----~~n---~~~~~~y~~~i~~l~~~gi~pivtL~ 115 (427)
T TIGR03356 51 DHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-----PVN---PKGLDFYDRLVDELLEAGIEPFVTLY 115 (427)
T ss_pred cHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCC-----CcC---HHHHHHHHHHHHHHHHcCCeeEEeec
Confidence 357788899999999999999976322211111100 112 11256789999999999999999985
No 114
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=87.93 E-value=0.82 Score=48.86 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++++++.+.|+++||+|+-|+.+- ++.++.
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIg-Va~dSa 303 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIG-VDKASV 303 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCcH
Confidence 578888899999999999999994 555543
No 115
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=87.69 E-value=5.4 Score=39.64 Aligned_cols=133 Identities=18% Similarity=0.104 Sum_probs=77.0
Q ss_pred HhhhhHHHHcCCCEEEeCCCCC-CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQ-SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGR 124 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~-~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~ 124 (424)
.+-++-+|+.|.++|.|+-=+- +..-+.-..++|..++ ... ..+=+++|++||+++||++-+= |..
T Consensus 84 ~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~-~~p-krDiv~el~~A~rk~Glk~G~Y----~S~------- 150 (384)
T smart00812 84 EEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVD-TGP-KRDLVGELADAVRKRGLKFGLY----HSL------- 150 (384)
T ss_pred HHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccC-CCC-CcchHHHHHHHHHHcCCeEEEE----cCH-------
Confidence 3446688999999999886432 1111222234555566 444 4578999999999999999982 221
Q ss_pred cceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHHHhcCCCeEEe
Q 014447 125 GIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKEL---SDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l---~~~~~~w~~~~gvDGfR~ 201 (424)
.+|....+ .+. . .........+.-.+++ ...++.++..+|-|.+=+
T Consensus 151 --------------~DW~~p~y-------~~~---~-------~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWf 199 (384)
T smart00812 151 --------------FDWFNPLY-------AGP---T-------SSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWF 199 (384)
T ss_pred --------------HHhCCCcc-------ccc---c-------ccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 11211000 000 0 0000011223455666 788889999999999999
Q ss_pred cccCCCCHHH-----HHHHHHhcCCC
Q 014447 202 DFVKGYAPSI-----TKVYMENTSPD 222 (424)
Q Consensus 202 D~a~~~~~~~-----~~~~~~~~~p~ 222 (424)
|..-.-+... +.+++++..|.
T Consensus 200 D~~~~~~~~~~~~~~l~~~~~~~qP~ 225 (384)
T smart00812 200 DGGWEAPDDYWRSKEFLAWLYNLSPV 225 (384)
T ss_pred eCCCCCccchhcHHHHHHHHHHhCCC
Confidence 9864333321 22235666673
No 116
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=87.63 E-value=4.1 Score=39.54 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=73.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeC-------CCCCCC--C-CCCCCc------ccccCCC-CCCCCCHHHHHHHHHHHHHc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLP-------PPSQSV--A-PQGYMP------GRLYDLD-ASKYGSQADLKSLIQAFRQK 103 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~-------Pi~~~~--~-~~gY~~------~d~~~id-~~~~Gt~edl~~Lv~~aH~~ 103 (424)
+..-|.+-|+.++..++|.++|- ++-..| . ...|.. ..+.... ...+=|.+|+|++|+-|.++
T Consensus 15 ~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~yA~~r 94 (326)
T cd06564 15 SMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAYAKDR 94 (326)
T ss_pred CHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHHHHHc
Confidence 36778888899999999999982 111111 0 000100 0001111 01222799999999999999
Q ss_pred CCEEEEeee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 014447 104 GIKCLADMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKE 182 (424)
Q Consensus 104 Gi~VilD~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~ 182 (424)
||.||-.+- |-|+..--.. ++. ..+.+. ......-.||..+|++.++
T Consensus 95 gI~vIPEID~PGH~~a~~~~-------~pe------------l~~~~~-------------~~~~~~~~l~~~~~~t~~f 142 (326)
T cd06564 95 GVNIIPEIDSPGHSLAFTKA-------MPE------------LGLKNP-------------FSKYDKDTLDISNPEAVKF 142 (326)
T ss_pred CCeEeccCCCcHHHHHHHHh-------hHH------------hcCCCc-------------ccCCCcccccCCCHHHHHH
Confidence 999997663 4565321000 000 000000 0111222489999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEe
Q 014447 183 LSDWMNWLKTEIG--FDGWRF 201 (424)
Q Consensus 183 l~~~~~~w~~~~g--vDGfR~ 201 (424)
+.+.+...++-|. -+=|-+
T Consensus 143 ~~~l~~E~~~~f~~~~~~~Hi 163 (326)
T cd06564 143 VKALFDEYLDGFNPKSDTVHI 163 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEe
Confidence 9999999988665 344443
No 117
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=86.03 E-value=3.2 Score=42.14 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=56.2
Q ss_pred CCCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeC-------CC--CCCC------CCCCCCcccccCC
Q 014447 18 LPFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLP-------PP--SQSV------APQGYMPGRLYDL 82 (424)
Q Consensus 18 p~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~-------Pi--~~~~------~~~gY~~~d~~~i 82 (424)
|.+.-+++|+-+=- ... +...|.+-||.+...++|.+++- |+ -..| .+.++...+...+
T Consensus 3 Prf~~RGlmLDvaR-~f~-----~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~ 76 (445)
T cd06569 3 PRFEYRGMHLDVAR-NFH-----SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCL 76 (445)
T ss_pred CCCcccceeeeccC-CCC-----CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccc
Confidence 55666666653221 111 47788888899999999998874 11 0011 1222222222222
Q ss_pred CCCCCC-------------CHHHHHHHHHHHHHcCCEEEEee-ecccCC
Q 014447 83 DASKYG-------------SQADLKSLIQAFRQKGIKCLADM-VINHRT 117 (424)
Q Consensus 83 d~~~~G-------------t~edl~~Lv~~aH~~Gi~VilD~-v~NH~~ 117 (424)
- |.+| |.+|++++|+-|++|||.||-.+ ++-|+.
T Consensus 77 ~-~~~~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~ 124 (445)
T cd06569 77 L-PQLGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHAR 124 (445)
T ss_pred c-cccccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHH
Confidence 2 2221 79999999999999999999776 345664
No 118
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=85.63 E-value=2 Score=40.90 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=40.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCc--------ccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMP--------GRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~--------~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~V 107 (424)
+...+..-|+.+|+.|||.|++.=+.+.. +..|..+ .|+..++ +.| -+-+.+.|+.|.++||.+
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N-~~Y--F~~~d~~i~~a~~~Gi~~ 104 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPN-PAY--FDHLDRRIEKANELGIEA 104 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT-----H--HHHHHHHHHHHHHTT-EE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCC-HHH--HHHHHHHHHHHHHCCCeE
Confidence 34566667999999999999996544421 2233333 3555666 444 578999999999999988
Q ss_pred EEeeeccc
Q 014447 108 LADMVINH 115 (424)
Q Consensus 108 ilD~v~NH 115 (424)
+||+-|
T Consensus 105 --~lv~~w 110 (289)
T PF13204_consen 105 --ALVPFW 110 (289)
T ss_dssp --EEESS-
T ss_pred --EEEEEE
Confidence 577765
No 119
>PRK15452 putative protease; Provisional
Probab=85.00 E-value=6.9 Score=39.66 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=35.8
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
|++ ++|...-+.|.++|++..-. |..+-. . ..| +.+++++.|+.||++|.+|.+
T Consensus 11 g~~----e~l~aAi~~GADaVY~G~~~-------~~~R~~---~-~~f-~~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 11 GTL----KNMRYAFAYGADAVYAGQPR-------YSLRVR---N-NEF-NHENLALGINEAHALGKKFYV 64 (443)
T ss_pred CCH----HHHHHHHHCCCCEEEECCCc-------cchhhh---c-cCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 566 44445557799999996421 111110 1 122 368999999999999999987
No 120
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=84.43 E-value=10 Score=37.16 Aligned_cols=142 Identities=15% Similarity=0.023 Sum_probs=72.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRG 125 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~ 125 (424)
+-++-+|+.|.++|.|+--+-. ..=+.-..++|..++ ...+ .+=+++|++||+++|||+.+=+- ..
T Consensus 95 qW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~-~~~k-rDiv~El~~A~rk~Glk~G~Y~S---~~-------- 161 (346)
T PF01120_consen 95 QWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVN-SGPK-RDIVGELADACRKYGLKFGLYYS---PW-------- 161 (346)
T ss_dssp HHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGG-GGGT-S-HHHHHHHHHHHTT-EEEEEEE---SS--------
T ss_pred HHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccC-CCCC-CCHHHHHHHHHHHcCCeEEEEec---ch--------
Confidence 3456789999999999865431 111111223333333 2222 46799999999999999999222 11
Q ss_pred ceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 126 IYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHL-NPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 126 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~-np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
+|.......... .+... .++..-. ...+.+++...++.+++++.+|++=+|..
T Consensus 162 --------------dw~~~~~~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~ 215 (346)
T PF01120_consen 162 --------------DWHHPDYPPDEE--GDENG----------PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG 215 (346)
T ss_dssp --------------SCCCTTTTSSCH--CHHCC------------HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST
T ss_pred --------------HhcCcccCCCcc--CCccc----------ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC
Confidence 111100000000 00000 0000000 11245578888999999999999999997
Q ss_pred CCCCHH-----HHHHHHHhcCCCeEEee
Q 014447 205 KGYAPS-----ITKVYMENTSPDFAVGE 227 (424)
Q Consensus 205 ~~~~~~-----~~~~~~~~~~p~~~v~E 227 (424)
..-+.+ -+...+++..|..+|.-
T Consensus 216 ~~~~~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 216 WPDPDEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp TSCCCTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred CCccccccCHHHHHHHHHHhCCeEEEec
Confidence 653221 12223566677444433
No 121
>PLN02950 4-alpha-glucanotransferase
Probab=84.26 E-value=2.6 Score=46.58 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 91 ADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 91 edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
++++++.+.|+++||+|+.|+.+- ++.++.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig-V~~dSa 490 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG-VDRNSV 490 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece-eCCCcH
Confidence 578889999999999999999994 555443
No 122
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.08 E-value=1.9 Score=39.68 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=39.0
Q ss_pred CCcHHH-------HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 39 GGWYNS-------LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 39 ~G~~~g-------i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
||||-. +.+-|++.|+|||++|+++= | +..+. .++..++|+.+.++|++|+-.+
T Consensus 73 GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSd--------G-----ti~l~------~~~r~~~I~~~~~~Gf~v~~Ev 133 (244)
T PF02679_consen 73 GGTLFEVAYQQGKFDEYLEECKELGFDAIEISD--------G-----TIDLP------EEERLRLIRKAKEEGFKVLSEV 133 (244)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE----------S-----SS---------HHHHHHHHHHHCCTTSEEEEEE
T ss_pred CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecC--------C-----ceeCC------HHHHHHHHHHHHHCCCEEeecc
Confidence 566544 44567899999999999983 2 33455 7899999999999999998776
Q ss_pred e
Q 014447 112 V 112 (424)
Q Consensus 112 v 112 (424)
=
T Consensus 134 G 134 (244)
T PF02679_consen 134 G 134 (244)
T ss_dssp S
T ss_pred c
Confidence 4
No 123
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=84.02 E-value=1 Score=47.32 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCC--CHHHHHHHHHhcCC-CeEEeee
Q 014447 157 QGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGY--APSITKVYMENTSP-DFAVGEK 228 (424)
Q Consensus 157 ~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~--~~~~~~~~~~~~~p-~~~v~E~ 228 (424)
.-+|.......++.-+.-+.+.|.+.--..+..|++|-=|||.|+|.+..+ |...++.+-++..| .+++-|-
T Consensus 258 ~inyRRFF~Vn~L~glRvEd~~VF~~tH~li~~L~~eglidGlRIDHiDGLaDP~gYl~rLR~~~G~~~~I~VEK 332 (889)
T COG3280 258 EINYRRFFDVNSLAGLRVEDPAVFEATHRLIFELLREGLIDGLRIDHIDGLADPKGYLRRLRQLVGPDRYIVVEK 332 (889)
T ss_pred ccCeeeeeeccchheeeeccHHHHHHHHHHHHHHHHhccccceeecccccccCHHHHHHHHHHhcCCCcEEEEeh
Confidence 346666667788888999999999999999999999777999999999888 44566666555554 5555554
No 124
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=83.80 E-value=3.6 Score=39.99 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=72.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC-----------CCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-----------ASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id-----------~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...|.+-||.++..++|.+++----. .++...+..|-++- +..+=|.+|+++||+-|.++||+||-
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~--~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~elv~yA~~rgI~vIP 93 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDD--QGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDIVAYAAERHITVVP 93 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecC--CcceeeecCcccccccccccccCCCCCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 477788889999999999999853110 11222222221111 01122799999999999999999997
Q ss_pred eee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccC-CCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 014447 110 DMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRG-DKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWM 187 (424)
Q Consensus 110 D~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~ 187 (424)
.+- +-|+..--.. ++. ..+.. .... + ...-.....||..+|++.+.+.+.+
T Consensus 94 EiD~PGH~~a~~~~-------~p~------------l~~~~~~~~~------~--~~~~~~~~~l~~~~~~t~~fl~~v~ 146 (329)
T cd06568 94 EIDMPGHTNAALAA-------YPE------------LNCDGKAKPL------Y--TGIEVGFSSLDVDKPTTYEFVDDVF 146 (329)
T ss_pred ecCCcHHHHHHHHh-------Chh------------hccCCCCCcc------c--cccCCCCcccCCCCHHHHHHHHHHH
Confidence 763 3454321000 000 00000 0000 0 0000112358999999999999999
Q ss_pred HHHHHhcC
Q 014447 188 NWLKTEIG 195 (424)
Q Consensus 188 ~~w~~~~g 195 (424)
..+++-+-
T Consensus 147 ~E~~~~f~ 154 (329)
T cd06568 147 RELAALTP 154 (329)
T ss_pred HHHHHhCC
Confidence 98887443
No 125
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=83.64 E-value=2.8 Score=32.28 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred ecCCCEEEEEECC----EEEEEECCCCC-------CCCcCCCCcEEEEeCCcEE
Q 014447 377 ASDADVYIAAIGD----RVIMKIGPKMD-------IGNLIPSDFKVAADGTDYA 419 (424)
Q Consensus 377 ~~~~~v~~~~r~~----~~lv~ln~~~~-------~~~~~~~~~~~~~~~~~~~ 419 (424)
..++.++||.|.+ .++|++|.+.. ++-...+.|++.++++...
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~ 59 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEE 59 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSSSEEEEETTTTTCEE
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCCcceeeEEeCCCccE
Confidence 4678999999932 68999997543 2222244666666665544
No 126
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=82.91 E-value=0.75 Score=39.72 Aligned_cols=49 Identities=10% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeE-------EEec----CCCEEEEEE-C------------CEEEEEECCCCC
Q 014447 352 KEAISKLAAVRNRNGINTASRVN-------ILAS----DADVYIAAI-G------------DRVIMKIGPKMD 400 (424)
Q Consensus 352 ~~~~~~L~~lR~~~~al~~G~~~-------~~~~----~~~v~~~~r-~------------~~~lv~ln~~~~ 400 (424)
.+++++|++||+.+|.++-+.-+ .... .++++++.. + +.++|++|.+.+
T Consensus 44 ~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~ 116 (168)
T PF11852_consen 44 SAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGPDQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPE 116 (168)
T ss_dssp HHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-STT--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS
T ss_pred HHHHHHHHHHhccCccccCCCHHHHHHhccccCCCCCCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCC
Confidence 68999999999999998766532 2222 368999885 2 358899998654
No 127
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=82.89 E-value=30 Score=32.68 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=72.5
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH-HHHHHHHHH-HcCCEEEEeeecccCCCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LKSLIQAFR-QKGIKCLADMVINHRTAERKD 122 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed-l~~Lv~~aH-~~Gi~VilD~v~NH~~~~~~~ 122 (424)
+-+-+++|+++|+++|+|-++....++.-.+. .|=++ .++=-.+| |-+.+=+++ +.|++|..=+.+ .+-+-+.
T Consensus 19 l~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~~~--~YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPv--laf~lp~ 93 (294)
T PF14883_consen 19 LDKLIQRIKDMGINTVYLQAFADPDGDGNADA--VYFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPV--LAFDLPK 93 (294)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCCCCCceee--EEcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeeh--hhccCCC
Confidence 33456789999999999998876533322222 22234 44444455 555553555 899999988776 3222110
Q ss_pred CCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 123 GRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
. ..+....... ..-.....|..-+|++|+.|.++.+-+..--.+||+=+
T Consensus 94 ~---------------~~~~~~~~~~---------------~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILF 142 (294)
T PF14883_consen 94 V---------------KRADEVRTDR---------------PDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILF 142 (294)
T ss_pred c---------------chhhhccccC---------------CCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 0 0000000000 00112223777789999999999999998449999988
No 128
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=81.16 E-value=19 Score=35.43 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=69.0
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCC------CCCCC------CCCCCccc-------ccCCCCC--CCCCHHHHHHHHHHH
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPP------SQSVA------PQGYMPGR-------LYDLDAS--KYGSQADLKSLIQAF 100 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi------~~~~~------~~gY~~~d-------~~~id~~--~~Gt~edl~~Lv~~a 100 (424)
...|.+-++.++..++|.+++--- .+.+. ..+|...+ ..... + .+=|.+|++++|+-|
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~-~~~~~YT~~di~eiv~yA 95 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGT-PYGGFYTQEEIREIVAYA 95 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCC-ccCceECHHHHHHHHHHH
Confidence 677888889999999999998421 01110 01111111 01111 1 111699999999999
Q ss_pred HHcCCEEEEeee-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHH
Q 014447 101 RQKGIKCLADMV-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRV 179 (424)
Q Consensus 101 H~~Gi~VilD~v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v 179 (424)
.++||+||-.+- |.|+..--.. ++. ..+.+... . .........-.||..+|++
T Consensus 96 ~~rgI~VIPEID~PGH~~a~l~~-------~pe------------l~~~~~~~------~-~~~~~~~~~~~L~~~~~~t 149 (357)
T cd06563 96 AERGITVIPEIDMPGHALAALAA-------YPE------------LGCTGGPG------S-VVSVQGVVSNVLCPGKPET 149 (357)
T ss_pred HHcCCEEEEecCCchhHHHHHHh-------Ccc------------ccCCCCCC------c-cccccCcCCCccCCCChhH
Confidence 999999997753 4555321000 000 00000000 0 0000011122389999999
Q ss_pred HHHHHHHHHHHHHhc
Q 014447 180 QKELSDWMNWLKTEI 194 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~ 194 (424)
.+.+.+.+..+++-|
T Consensus 150 ~~f~~~ll~E~~~lF 164 (357)
T cd06563 150 YTFLEDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998888744
No 129
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=80.66 E-value=2.2 Score=42.12 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=47.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.++++.+...|..||.+||++|-+- .+.|...+.. -| ...+++|.+-+++.|+||.+=+-++.
T Consensus 12 ~~~~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~--------yd------Ws~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 12 DNDWNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQ--------YD------WSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp TSECHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB-----------------HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CCcHHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCc--------cC------cHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 4789999999999999999999763 1223322222 22 56899999999999999999999988
Q ss_pred CCCC
Q 014447 116 RTAE 119 (424)
Q Consensus 116 ~~~~ 119 (424)
|+.+
T Consensus 78 cGgN 81 (402)
T PF01373_consen 78 CGGN 81 (402)
T ss_dssp BSSS
T ss_pred CCCC
Confidence 8654
No 130
>PLN02803 beta-amylase
Probab=77.99 E-value=7.8 Score=39.54 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=50.6
Q ss_pred CCcH---HHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 39 GGWY---NSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 39 ~G~~---~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.|.+ +.+...|..||.+||++|-+- .|.|..+...|+ ...+++|++-+++.|+||.+=+-
T Consensus 100 ~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmS 165 (548)
T PLN02803 100 GGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYN--------------WEGYAELVQMVQKHGLKLQVVMS 165 (548)
T ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEE
Confidence 3556 779999999999999999763 223332222221 55789999999999999999999
Q ss_pred cccCCCC
Q 014447 113 INHRTAE 119 (424)
Q Consensus 113 ~NH~~~~ 119 (424)
++.|+.+
T Consensus 166 FHqCGGN 172 (548)
T PLN02803 166 FHQCGGN 172 (548)
T ss_pred ecccCCC
Confidence 9888764
No 131
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=77.31 E-value=8.8 Score=36.87 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEeccc
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFV 204 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a 204 (424)
.++|..|+.+++.+..+++++|.||+-+|--
T Consensus 82 l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE 112 (313)
T cd02874 82 LSNPEARQRLINNILALAKKYGYDGVNIDFE 112 (313)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCcEEEecc
Confidence 3568889989998888887899999999974
No 132
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=77.20 E-value=9 Score=30.54 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
-.++..++..|++-|+++|+|+.-....++++. - |. .|.+++.|++.- |+.||.
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~--------C-P~---~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGP--------C-PH---IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCC--------C-CC---HHHHHHHHHHHh--CCCEee
Confidence 467888899999999999999987765444331 1 22 445555554433 998874
No 133
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=76.10 E-value=20 Score=34.39 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=59.6
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAERK 121 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~ 121 (424)
...=.+.+..+++.|.|+=.--| ....|.-..+.++= |.= ..++|++|+++|++.|++.+.=+-|-..
T Consensus 14 ~e~R~~l~~f~~~~kmN~YiYAP-----KdDpyhr~~Wre~Y-p~~-el~~l~~L~~~a~~~~V~Fv~aisPg~~----- 81 (306)
T PF07555_consen 14 HEDRLDLIRFLGRYKMNTYIYAP-----KDDPYHRSKWREPY-PEE-ELAELKELADAAKANGVDFVYAISPGLD----- 81 (306)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-------TT-TTTTTTTTS----HH-HHHHHHHHHHHHHHTT-EEEEEEBGTTT-----
T ss_pred HHHHHHHHHHHHHcCCceEEECC-----CCChHHHhhhcccC-CHH-HHHHHHHHHHHHHHcCCEEEEEECcccc-----
Confidence 55666677888999999877665 33333333333222 110 3688999999999999998866544211
Q ss_pred CCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe
Q 014447 122 DGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF 201 (424)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~ 201 (424)
+++++++..+.|++-+..+.+ .||+-|-+
T Consensus 82 --------------------------------------------------~~~s~~~d~~~L~~K~~ql~~-lGvr~Fai 110 (306)
T PF07555_consen 82 --------------------------------------------------ICYSSEEDFEALKAKFDQLYD-LGVRSFAI 110 (306)
T ss_dssp ----------------------------------------------------TSHHHHHHHHHHHHHHHHC-TT--EEEE
T ss_pred --------------------------------------------------cccCcHHHHHHHHHHHHHHHh-cCCCEEEE
Confidence 344567788889999999998 99998865
No 134
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=75.87 E-value=2.9 Score=40.88 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=71.1
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC------CCC---CCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD------ASK---YGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id------~~~---~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+..-|.+-|+.++..++|.++|---- . .++.+....+-.+. +.. +=|.+|+++||+-|+++||+||-.+
T Consensus 16 ~~~~ik~~id~ma~~k~N~lhlhl~D-~-~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 16 SVDTIKRLIDQMAYYKLNVLHLHLSD-D-QGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEEEEES-S-TCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEec-C-CCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 46778889999999999999984210 0 11111111111111 000 3368999999999999999999776
Q ss_pred e-cccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 014447 112 V-INHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWL 190 (424)
Q Consensus 112 v-~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w 190 (424)
- |-|++.--.. +.-+... .|.... .+. ........-..||..+|++.+.+.+.+..+
T Consensus 94 d~PGH~~~~l~~----~p~~~~~------~~~~~~------~~~------~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~ 151 (351)
T PF00728_consen 94 DTPGHAEAWLKA----YPELGCS------AWPEDK------SWP------NSTCWYPDNGVLDPSNPETYEFLKDLLDEV 151 (351)
T ss_dssp EESSS-HHHHHH----HHHHCCC------HTTCSS------SCE------EEETTSEEEEEE-TTSHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHh----Cchhhcc------cccccc------ccc------cccccCCCcccCCCCcHHHHHHHHHHHHHH
Confidence 3 4566431100 0000000 000000 000 000000011138999999999999999998
Q ss_pred HHhcCCCeEEe
Q 014447 191 KTEIGFDGWRF 201 (424)
Q Consensus 191 ~~~~gvDGfR~ 201 (424)
++-+.-.-|-+
T Consensus 152 ~~~f~~~~iHi 162 (351)
T PF00728_consen 152 ADLFPSKYIHI 162 (351)
T ss_dssp HHHHTSSEEEE
T ss_pred HhhCCCCeEEe
Confidence 88666555544
No 135
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.51 E-value=40 Score=31.45 Aligned_cols=51 Identities=10% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
.+.+.|+.++++|+++|.|.+- ..+.| . +.+ +.++.++|.+++.+.||+|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~----~~~~~--------~-~~~-~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGG----RPHAF--------A-PDL-KAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccC----Ccccc--------c-ccc-CchHHHHHHHHHHHcCCeEE
Confidence 4778999999999999999520 01111 1 111 24578889999999999984
No 136
>PLN02801 beta-amylase
Probab=74.95 E-value=9.9 Score=38.59 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=49.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+-+.+...|..||.+||++|-+- .|.|..+...|+ ...+++|++-+++.|+||.+=+-++.|+
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmSFHqCG 100 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYD--------------WSAYRSLFELVQSFGLKIQAIMSFHQCG 100 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccC--------------cHHHHHHHHHHHHcCCeEEEEEEecccC
Confidence 35678999999999999999763 122332222221 5578999999999999999999998887
Q ss_pred CC
Q 014447 118 AE 119 (424)
Q Consensus 118 ~~ 119 (424)
.+
T Consensus 101 GN 102 (517)
T PLN02801 101 GN 102 (517)
T ss_pred CC
Confidence 64
No 137
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=74.71 E-value=16 Score=32.51 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (424)
.+++.|+.+.+.+..+++++|.||+-+|--.
T Consensus 84 ~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~ 114 (210)
T cd00598 84 SDPASRAAFANSLVSFLKTYGFDGVDIDWEY 114 (210)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCceEEeeeC
Confidence 5677888899988888888999999999643
No 138
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=74.71 E-value=43 Score=30.41 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhcCCCeEEecccCCCCHHHHHHHHH
Q 014447 181 KELSDWMNWLKTEIGFDGWRFDFVKGYAPSITKVYME 217 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~ 217 (424)
-.+.+.+..+++ .||+.||+|.-..- .+...++++
T Consensus 156 l~l~~~l~~L~~-~Gv~~~rI~~r~~~-~~~~~~iv~ 190 (233)
T PF01136_consen 156 LCLLDELPELKD-AGVDSFRIDGRTES-PEYIEEIVK 190 (233)
T ss_pred hhHHHHHHHHHH-cCCCEEEEcCccCC-HHHHHHHHH
Confidence 357778888888 99999999995444 555555544
No 139
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=74.52 E-value=6.5 Score=39.46 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=39.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC---CHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG---SQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G---t~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+-+.++|+.|+++|-|+=-...- . .. ...+ |.+= ...=+.+.|+.|.++||+|++|+--
T Consensus 75 ~~~~~~~ik~~G~n~VRiPi~~~~~-~----~~--~~~~-p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~ 138 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRIPIGYWAL-Q----AT--DGDN-PYLIGLTQLKILDEAINWAKKLGIYVLIDLHG 138 (407)
T ss_pred hhhHHHHHHHcCCcEEEcccchhhh-h----cc--CCCC-CCeecchHHHHHHHHHHHHHhcCeeEEEEecc
Confidence 3566889999999999985222221 0 11 0034 4433 2335677799999999999999743
No 140
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=74.44 E-value=13 Score=33.72 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 014447 89 SQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~Vil 109 (424)
+.++++++.+.+.++|+++++
T Consensus 191 ~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 191 SSADVATMREMAERAGFQVTV 211 (213)
T ss_pred CHHHHHHHHHHHHHcCCeEEe
Confidence 588999999999999999964
No 141
>PTZ00445 p36-lilke protein; Provisional
Probab=73.80 E-value=8.6 Score=34.59 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=39.3
Q ss_pred HHHHhhhhHHHHcCCCEEEe------CCCCCCCCCCCCCcccccCCCCCCCCC--HHHHHHHHHHHHHcCCEEEE
Q 014447 43 NSLKNSIPDLSNAGITHVWL------PPPSQSVAPQGYMPGRLYDLDASKYGS--QADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l------~Pi~~~~~~~gY~~~d~~~id~~~~Gt--~edl~~Lv~~aH~~Gi~Vil 109 (424)
..+-...+.|++.||++|-. .+++ +.||.-.+ .-+ ..+++ ..+|+.+++++++.||+|++
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnTlI~~H----sgG~~~~~--~~~-~~~~~~~tpefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLTMITKH----SGGYIDPD--NDD-IRVLTSVTPDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhhhhhhh----cccccCCC--cch-hhhhccCCHHHHHHHHHHHHCCCeEEE
Confidence 34444567899999999975 2333 33544332 122 33332 45699999999999999975
No 142
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.54 E-value=46 Score=31.14 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+.+.++.++++|+++|+|.+.. .+. ..... .+ +.++++.+.+.+.++||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~----~~~----~~~~~---~~-~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDE----SDE----RLARL---DW-SKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCC----ccc----ccccc---cC-CHHHHHHHHHHHHHcCCCceE
Confidence 46688999999999999996421 010 00001 11 367799999999999999874
No 143
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=72.89 E-value=16 Score=34.17 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDF 166 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (424)
--+.+++.+-|+.|+++||+|+.-+.+.=.+
T Consensus 164 gHd~~~y~dav~r~rkrgIkvc~HiI~GLPg------------------------------------------------- 194 (312)
T COG1242 164 GHDFACYVDAVKRLRKRGIKVCTHLINGLPG------------------------------------------------- 194 (312)
T ss_pred ccchHHHHHHHHHHHHcCCeEEEEEeeCCCC-------------------------------------------------
Confidence 3346789999999999999999777664110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 167 QPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 167 ~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+-+++|++.++...+ .||||+-+--
T Consensus 195 -----------E~~~~mleTak~v~~-~~v~GIKlH~ 219 (312)
T COG1242 195 -----------ETRDEMLETAKIVAE-LGVDGIKLHP 219 (312)
T ss_pred -----------CCHHHHHHHHHHHHh-cCCceEEEEE
Confidence 246789999998777 9999998854
No 144
>PLN00197 beta-amylase; Provisional
Probab=70.86 E-value=14 Score=37.83 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=48.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
-+.+...|..||.+||++|-+- .|.|..+...|+ ...+++|++-+++.|+||.+=+-++.|+.
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~Yd--------------WsgY~~L~~mvr~~GLKlq~VmSFHqCGG 191 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYN--------------WGGYNELLEMAKRHGLKVQAVMSFHQCGG 191 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEecccCC
Confidence 4568899999999999999763 122332222221 55789999999999999999999988876
Q ss_pred C
Q 014447 119 E 119 (424)
Q Consensus 119 ~ 119 (424)
+
T Consensus 192 N 192 (573)
T PLN00197 192 N 192 (573)
T ss_pred C
Confidence 4
No 145
>PLN02905 beta-amylase
Probab=70.78 E-value=14 Score=38.42 Aligned_cols=66 Identities=20% Similarity=0.150 Sum_probs=49.8
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
-+.+.+...|..||.+||++|-+-= |.|.....-|+ ...+++|++-+++.||||.+=+-++.|
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~Yd--------------WsgY~~L~~mvr~~GLKlqvVMSFHqC 348 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYN--------------WNGYKRLFQMVRELKLKLQVVMSFHEC 348 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 3567899999999999999997631 22322222221 557899999999999999999999888
Q ss_pred CCC
Q 014447 117 TAE 119 (424)
Q Consensus 117 ~~~ 119 (424)
+.+
T Consensus 349 GGN 351 (702)
T PLN02905 349 GGN 351 (702)
T ss_pred CCC
Confidence 764
No 146
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=70.42 E-value=35 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=34.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+++..+-+-|+++|++.=- .|..+.+- ..| |.+++++.|+-||++|.|+++=+
T Consensus 17 ~~l~~ai~~GADaVY~G~~-------~~~~R~~a----~nf-s~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK-------EFGLRRRA----LNF-SVEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc-------cccccccc----ccC-CHHHHHHHHHHHHHcCCeEEEEe
Confidence 4444445568999998732 12222111 011 36789999999999999998644
No 147
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=70.34 E-value=16 Score=34.39 Aligned_cols=137 Identities=17% Similarity=0.320 Sum_probs=75.0
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCC---HHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGS---QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt---~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+-+.++..-+|+-|+|++.+== +.. +.-.|...| .+. ...++ --|.+.+|++|++.||.+|.-+|.---+.
T Consensus 77 k~~de~fk~ikdn~~Na~ViD~--Kdd~G~lty~s~d--~~~-~~~~sv~~f~Di~~~iKkaKe~giY~IARiVvFKD~~ 151 (400)
T COG1306 77 KRLDELFKLIKDNNINAFVIDV--KDDYGELTYPSSD--EIN-KYTKSVNKFKDIEPVIKKAKENGIYAIARIVVFKDTI 151 (400)
T ss_pred hHHHHHHHHHHhCCCCEEEEEe--cCCCccEeccccc--hhh-hhhhccccccccHHHHHHHHhcCeEEEEEEEEeeeee
Confidence 3455677888999999887631 110 112233332 222 22333 35788999999999999999988742211
Q ss_pred CCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 014447 119 ERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQ-GNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFD 197 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvD 197 (424)
-.......-..+.++ ..|... .++. ..+..+.-| .+--++.+|+|=+.+.+.-++ +|+|
T Consensus 152 l~~~n~fk~av~~~g-----Kpw~~~---------~ngaLrKe~~~ehW-----Vd~y~~~~WeYNvtIAKEa~~-fGfd 211 (400)
T COG1306 152 LAKENPFKIAVYKDG-----KPWKAF---------TNGALRKESDGEHW-----VDAYDKNLWEYNVTIAKEAAK-FGFD 211 (400)
T ss_pred EEeecCceEEEEcCC-----Ccchhh---------hcccccccccceee-----ecccchhhhhhhHHHHHHHHH-cCcc
Confidence 000000000011111 112111 1100 011111111 455678999999999999998 9999
Q ss_pred eEEeccc
Q 014447 198 GWRFDFV 204 (424)
Q Consensus 198 GfR~D~a 204 (424)
-+.+|=+
T Consensus 212 EiQFDYI 218 (400)
T COG1306 212 EIQFDYI 218 (400)
T ss_pred ceeeeEE
Confidence 9998865
No 148
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=70.19 E-value=8.9 Score=30.98 Aligned_cols=43 Identities=28% Similarity=0.591 Sum_probs=30.9
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
=..+.+-++.+.++|+..||+.|= ++-+++++.|+++||+|+-
T Consensus 65 ~~~~~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 65 PDKVPEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEe
Confidence 345677889999999999999872 2456788889999999874
No 149
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=70.05 E-value=8.2 Score=40.31 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=42.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCC-C-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQ-S-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~-~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
..++|..+|++|+++|+.-=++. + |....| .|.+.-||-+||++||+.|+.|+|=+=+==|
T Consensus 51 W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y-----------~FsG~~DlvkFikl~~~~GLyv~LRiGPyIc 113 (649)
T KOG0496|consen 51 WPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKY-----------DFSGRYDLVKFIKLIHKAGLYVILRIGPYIC 113 (649)
T ss_pred hHHHHHHHHhcCCceeeeeeecccccCCCCcc-----------cccchhHHHHHHHHHHHCCeEEEecCCCeEE
Confidence 34678889999999998643332 1 122222 2445669999999999999999998765434
No 150
>PLN02161 beta-amylase
Probab=69.99 E-value=16 Score=37.08 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=49.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeC---CCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLP---PPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~---Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
-+.+.+...|..||.+||++|-+- .|.|..+...|+ ...+++|++-+++.|+||.+=+-++.|
T Consensus 114 ~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~Yd--------------WsgY~~l~~mvr~~GLKlq~vmSFHqC 179 (531)
T PLN02161 114 KRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFK--------------WSLYEELFRLISEAGLKLHVALCFHSN 179 (531)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCC--------------cHHHHHHHHHHHHcCCeEEEEEEeccc
Confidence 346678999999999999999763 122332222221 557899999999999999999999887
Q ss_pred CCC
Q 014447 117 TAE 119 (424)
Q Consensus 117 ~~~ 119 (424)
+.+
T Consensus 180 GGN 182 (531)
T PLN02161 180 MHL 182 (531)
T ss_pred CCC
Confidence 654
No 151
>KOG2730 consensus Methylase [General function prediction only]
Probab=69.51 E-value=3.8 Score=36.95 Aligned_cols=44 Identities=16% Similarity=0.001 Sum_probs=38.1
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD 83 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id 83 (424)
.||+.++.+.|..-|+. ++.|.++|++-+|++.+|.+.|+....
T Consensus 149 ~GD~ld~~~~lq~~K~~-~~~vf~sppwggp~y~~~~~~DL~~~~ 192 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIK-YDCVFLSPPWGGPSYLRADVYDLETHL 192 (263)
T ss_pred echHHHHHHHHhhhhhe-eeeeecCCCCCCcchhhhhhhhhhhhc
Confidence 49999999999988888 999999999988888888887766555
No 152
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=69.07 E-value=12 Score=38.42 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=43.7
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi-~VilD~v~NH~~ 117 (424)
++|..|++.|++.|.|.|= ..+..-+..+. +-.|.++..+.++.|++.|+ .|-+|+.+.-.+
T Consensus 270 e~L~~Lk~~Gv~RISIGvQ-------S~~d~vLk~ig--R~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPg 332 (488)
T PRK08207 270 EKLEVLKKYGVDRISINPQ-------TMNDETLKAIG--RHHTVEDIIEKFHLAREMGFDNINMDLIIGLPG 332 (488)
T ss_pred HHHHHHHhcCCCeEEEcCC-------cCCHHHHHHhC--CCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCC
Confidence 5677777777777776651 11112233444 34689999999999999999 788999997554
No 153
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=68.42 E-value=66 Score=30.08 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK-GIKCLA 109 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~-Gi~Vil 109 (424)
..+.+.++.++++|+++|+|..-. .++ ... +.. +.++++++.+.+.++ |+.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~----~~~-------~~~-~~~-~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGN----PRS-------WLS-RPL-KKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCC----CCc-------cCC-CCC-CHHHHHHHHHHHHHcCCCcEEE
Confidence 456788999999999999997411 011 112 222 578899999999999 777765
No 154
>PRK07094 biotin synthase; Provisional
Probab=68.26 E-value=11 Score=36.43 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=31.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 79 ~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
+..+. +. .+.++..+.++.+|+.||.|..++++.+.+..
T Consensus 155 ~~~i~-~~-~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget 193 (323)
T PRK07094 155 YAKLH-PG-MSFENRIACLKDLKELGYEVGSGFMVGLPGQT 193 (323)
T ss_pred HHHhC-CC-CCHHHHHHHHHHHHHcCCeecceEEEECCCCC
Confidence 44556 53 67899999999999999999999999876543
No 155
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=68.09 E-value=12 Score=37.07 Aligned_cols=33 Identities=9% Similarity=0.133 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
+-.|.++..+.++.+++.|+. |.+|++++..+.
T Consensus 139 R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgq 172 (375)
T PRK05628 139 RTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGE 172 (375)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 445788999999999999999 999999986654
No 156
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=67.94 E-value=9.7 Score=39.43 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=47.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
++|+.|+++|++.|.|.. + + .++-. +..++ +--|.++..+-++.+++.|++|.+|+.++--+
T Consensus 207 e~L~~L~~~G~~rVslGV-Q-S----~~d~V-L~~in--Rght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGV-Q-T----IYNDI-LERTK--RGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHcCCCEEEEEC-c-c----CCHHH-HHHhC--CCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 789999999999999874 1 1 11111 23344 44578899999999999999999999998554
No 157
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=67.88 E-value=14 Score=34.98 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=39.4
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.+..||+.|++.|.+. .+. .+.-|..+. +. .+.++..+.++.+|+.||+|...+++.+
T Consensus 124 e~l~~Lk~aG~~~v~i~--~E~------~~~~~~~i~-~~-~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl 182 (296)
T TIGR00433 124 EQAKRLKDAGLDYYNHN--LDT------SQEFYSNII-ST-HTYDDRVDTLENAKKAGLKVCSGGIFGL 182 (296)
T ss_pred HHHHHHHHcCCCEEEEc--ccC------CHHHHhhcc-CC-CCHHHHHHHHHHHHHcCCEEEEeEEEeC
Confidence 44555666666666654 111 122234455 43 4788999999999999999999988865
No 158
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=67.84 E-value=11 Score=36.22 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=40.4
Q ss_pred hhhhHHHHcCCC-EEEeCCCCCCCCCCCCCcccc-cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 47 NSIPDLSNAGIT-HVWLPPPSQSVAPQGYMPGRL-YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 47 ~~L~ylk~lGv~-~I~l~Pi~~~~~~~gY~~~d~-~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
++|..+++.|++ .|.|.+ |+ + +..-. ..++ ..+ |.+++.+.++.+|++||+|.+++.+.
T Consensus 118 e~L~~l~~aG~~~~v~iG~--ES----~-~d~~L~~~in-Kg~-t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGL--ET----A-NDRIREKSIN-KGS-TFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred HHHHHHHHcCCCEEEEEec--Cc----C-CHHHHHHhhC-CCC-CHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 556667777776 466543 11 0 11112 2355 444 78999999999999999999999986
No 159
>PLN02705 beta-amylase
Probab=67.77 E-value=16 Score=37.88 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=48.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCC---CCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPP---PSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~P---i~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+-+.+...|..||.+||++|-+-= |.|..+..-| | ...+++|++-+++.||||.+=+-++.|+
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~Y--------d------WsgY~~L~~mvr~~GLKlqvVmSFHqCG 331 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKY--------V------WSGYRELFNIIREFKLKLQVVMAFHEYG 331 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcC--------C------cHHHHHHHHHHHHcCCeEEEEEEeeccC
Confidence 347789999999999999997631 2232222222 1 5578999999999999999999998887
Q ss_pred CC
Q 014447 118 AE 119 (424)
Q Consensus 118 ~~ 119 (424)
.+
T Consensus 332 GN 333 (681)
T PLN02705 332 GN 333 (681)
T ss_pred CC
Confidence 64
No 160
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=67.72 E-value=19 Score=36.95 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=44.5
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.-..+-++-+|+||+++.-++=-+.-.-+.|.. ..++ -...+=.+++|++|+++||+.|+.|.
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~----~~~n---~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDE----LTPN---QQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCC----CCCC---HHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 47778888999999999999887433211111110 0112 11255689999999999999999875
No 161
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=66.83 E-value=37 Score=31.61 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
++++-|+.+.+.+..+++++|+||+-+|==..
T Consensus 92 ~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p 123 (256)
T cd06546 92 DDDEDFERYYGQLRDMIRRRGLDGLDLDVEEP 123 (256)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEeeecC
Confidence 34556666777777777779999999987443
No 162
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=66.70 E-value=78 Score=30.89 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=42.9
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
..++.....+.=|+.-|..-.+..++...++ +.. ..+. .. .-.+.+++|++++|++|-++++ -++|.+..
T Consensus 34 ~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~-~~~-~~l~-~d-~~i~~~~~l~~~vh~~g~~~~~--Ql~H~G~~ 103 (343)
T cd04734 34 RYIAYHEERARGGAGLIITEGSSVHPSDSPA-FGN-LNAS-DD-EIIPGFRRLAEAVHAHGAVIMI--QLTHLGRR 103 (343)
T ss_pred HHHHHHHHHHhCCCCEEEEeeeeeCCcccCC-CCc-cccC-CH-HHHHHHHHHHHHHHhcCCeEEE--eccCCCcC
Confidence 3444455555567888877655555443332 111 1111 00 0146899999999999999998 66887654
No 163
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=65.81 E-value=81 Score=29.29 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=37.0
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
++.+.++++.++|++.|+|.+--.. .+. +..-+.++.+++.+.+.+.||+|.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~----~~~---------~~~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPR----SWK---------GVRLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCC----CCC---------CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4667899999999999999643221 111 1122366788888889999999764
No 164
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=65.69 E-value=12 Score=32.23 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=36.6
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
||+..+..++..=+- ++.|.++|++-+|+|.+-.+.| +. ..+.. =++.+|++++.+.--.|++=++=|
T Consensus 55 gD~~~~~~~~~~~~~--~D~vFlSPPWGGp~Y~~~~~fd---L~-~~~~p-~~~~~l~~~~~~~t~nv~l~LPRn 122 (163)
T PF09445_consen 55 GDFFELLKRLKSNKI--FDVVFLSPPWGGPSYSKKDVFD---LE-KSMQP-FNLEDLLKAARKITPNVVLFLPRN 122 (163)
T ss_dssp S-HHHHGGGB--------SEEEE---BSSGGGGGSSSB----TT-TSSSS---HHHHHHHHHHH-S-EEEEEETT
T ss_pred CCHHHHHhhcccccc--ccEEEECCCCCCccccccCccC---HH-HccCC-CCHHHHHHHHHhhCCCEEEEeCCC
Confidence 677776665443211 8999999999888776644443 43 33322 347788888888888888777665
No 165
>PRK01060 endonuclease IV; Provisional
Probab=65.60 E-value=15 Score=34.52 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~V 107 (424)
+.++.+-|+.++++|+++|+|.+-. ++.+. . +. -+.++++++-+++.+.|++|
T Consensus 11 ~~~~~~~l~~~~~~G~d~vEl~~~~----p~~~~-------~-~~-~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 11 AGGLEGAVAEAAEIGANAFMIFTGN----PQQWK-------R-KP-LEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCC----CCCCc-------C-CC-CCHHHHHHHHHHHHHcCCCC
Confidence 3447788999999999999996521 11111 1 22 26888999999999999995
No 166
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=65.58 E-value=59 Score=31.68 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=41.3
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
..++.....+.=|+.-|..-...-++...++... -.+. .. -..+.+|++++++|++|-++++=+ +|.+...
T Consensus 37 ~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~--~~i~-~d-~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~~~ 107 (341)
T PF00724_consen 37 RLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQ--PGIW-DD-EQIPGLKKLADAVHAHGAKIIAQL--WHAGRQA 107 (341)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTS--EBSS-SH-HHHHHHHHHHHHHHHTTSEEEEEE--E--GGGS
T ss_pred HHHHHHHHHhhcCCceEEeccccccccccccccc--chhc-hh-hHHHHHHHHHHHHHhcCccceeec--ccccccc
Confidence 4455555555667877776555444332222111 0111 00 126789999999999999999865 7887654
No 167
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=65.55 E-value=1.4e+02 Score=29.42 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.+++|++++|++|-++++=+. |.+..
T Consensus 82 i~~~~~l~~~vh~~G~~i~~QL~--H~G~~ 109 (370)
T cd02929 82 IRNLAAMTDAVHKHGALAGIELW--HGGAH 109 (370)
T ss_pred HHHHHHHHHHHHHCCCeEEEecc--cCCCC
Confidence 67899999999999999988764 88754
No 168
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=64.71 E-value=15 Score=36.22 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=41.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
++|..|+++||+.|.|.. + ..+..-+..+. +-++.++..+.++.+++.|++ |-+|+.+...+.
T Consensus 101 e~l~~l~~~Gv~risiGv-q------S~~~~~l~~lg--R~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 164 (360)
T TIGR00539 101 EWCKGLKGAGINRLSLGV-Q------SFRDDKLLFLG--RQHSAKNIAPAIETALKSGIENISLDLMYGLPLQ 164 (360)
T ss_pred HHHHHHHHcCCCEEEEec-c------cCChHHHHHhC--CCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCC
Confidence 556667777777666642 1 11111122333 456789999999999999996 789999876543
No 169
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=64.58 E-value=6.7 Score=37.35 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.++++++.+-||++||+|.||-.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDGA 166 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDGA 166 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEET
T ss_pred CHHHHHHHHHHHHhCceEEEEehh
Confidence 378999999999999999999965
No 170
>PRK15447 putative protease; Provisional
Probab=64.41 E-value=21 Score=34.22 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=38.0
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.|++..+ ...|++.|+++|++.-..-+ -+ ..| +.+++++.|+.||++|.+|.+=
T Consensus 14 ~~~~~~~---~~~~~~~gaDaVY~g~~~~~-------~R-------~~f-~~~~l~e~v~~~~~~gkkvyva 67 (301)
T PRK15447 14 KETVRDF---YQRAADSPVDIVYLGETVCS-------KR-------REL-KVGDWLELAERLAAAGKEVVLS 67 (301)
T ss_pred CCCHHHH---HHHHHcCCCCEEEECCccCC-------Cc-------cCC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 3555444 45678899999999831111 11 112 4789999999999999999983
No 171
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=64.15 E-value=13 Score=36.23 Aligned_cols=31 Identities=19% Similarity=0.317 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCeEEecccCCC
Q 014447 177 PRVQKELSDWMNWLKTEIGFDGWRFDFVKGY 207 (424)
Q Consensus 177 p~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~ 207 (424)
++.+..+++.|...++.+|.||+=++.=...
T Consensus 85 ~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~ 115 (339)
T cd06547 85 EDGSFPVADKLVEVAKYYGFDGWLINIETEL 115 (339)
T ss_pred cccchHHHHHHHHHHHHhCCCceEeeeeccC
Confidence 3445567777777777799999999985554
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=64.04 E-value=15 Score=34.52 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=38.7
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
..+.+.|+.++++|+++|.|.+- .. ...++ +.--+.++.+.+.+++.++||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~-~~----------~~~~~-~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVD-ET----------DDRLS-RLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecC-Cc----------cchhh-ccCCCHHHHHHHHHHHHHcCCCce
Confidence 35778999999999999999531 10 01122 222247789999999999999986
No 173
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=64.02 E-value=51 Score=31.56 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
|.+++.+.++.++++||+|.+|+.+.
T Consensus 161 t~~~~~~ai~~l~~~gi~v~~~lI~G 186 (302)
T TIGR01212 161 DFACYVDAVKRARKRGIKVCSHVILG 186 (302)
T ss_pred hHHHHHHHHHHHHHcCCEEEEeEEEC
Confidence 67899999999999999999999886
No 174
>PRK06256 biotin synthase; Validated
Probab=63.89 E-value=12 Score=36.32 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=38.9
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.+..||+.|++.|.+.. ++ +..-|..+. +. .+.++..+.++.||+.||+|...+++.+
T Consensus 154 ~l~~LkeaG~~~v~~~l--Et------s~~~~~~i~-~~-~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl 211 (336)
T PRK06256 154 QAERLKEAGVDRYNHNL--ET------SRSYFPNVV-TT-HTYEDRIDTCEMVKAAGIEPCSGGIIGM 211 (336)
T ss_pred HHHHHHHhCCCEEecCC--cc------CHHHHhhcC-CC-CCHHHHHHHHHHHHHcCCeeccCeEEeC
Confidence 34455555555554421 11 222245566 54 3789999999999999999999999975
No 175
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.78 E-value=90 Score=29.24 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQP 168 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (424)
..+..+++++.++++|++|.+-+.--..
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~~~~a~~---------------------------------------------------- 134 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFNLMAISG---------------------------------------------------- 134 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEEEEeecC----------------------------------------------------
Confidence 5789999999999999988766554211
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 169 APDIDHLNPRVQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 169 ~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+ -.+++.+.++...+ .|+|.+++ |.+..+.|+-..++++..
T Consensus 135 -----~----~~~~~~~~~~~~~~-~g~~~i~l~DT~G~~~P~~v~~lv~~l 176 (266)
T cd07944 135 -----Y----SDEELLELLELVNE-IKPDVFYIVDSFGSMYPEDIKRIISLL 176 (266)
T ss_pred -----C----CHHHHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 0 12467777777776 99999987 777777777666665543
No 176
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=62.71 E-value=16 Score=35.80 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=42.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~ 117 (424)
++|+-+++.|++.|.+.- + ..+..-...+. +-.+.++..+.++.+++.|+. |-+|+.++..+
T Consensus 104 e~l~~lk~~G~nrisiGv-Q------S~~d~vL~~l~--R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPg 166 (353)
T PRK05904 104 SQINLLKKNKVNRISLGV-Q------SMNNNILKQLN--RTHTIQDSKEAINLLHKNGIYNISCDFLYCLPI 166 (353)
T ss_pred HHHHHHHHcCCCEEEEec-c------cCCHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCC
Confidence 667777777777776542 1 11122223344 345789999999999999997 88999998654
No 177
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=61.33 E-value=39 Score=34.58 Aligned_cols=67 Identities=10% Similarity=0.246 Sum_probs=45.6
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
..+.-..|-+.-+|+||+++--++=-+.-.-+.|.. .+| --..+=.++||++|.++||+-|+-+ .|.
T Consensus 50 d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-----~~N---~~gl~~Y~~lid~l~~~GI~P~VTL--~H~ 116 (467)
T TIGR01233 50 DFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-----EVN---EKGVEFYHKLFAECHKRHVEPFVTL--HHF 116 (467)
T ss_pred chhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCC-----CcC---HHHHHHHHHHHHHHHHcCCEEEEec--cCC
Confidence 457778888999999999998876322211112211 123 1135568999999999999999865 454
No 178
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=60.91 E-value=11 Score=34.16 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 84 ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 84 ~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
|.--|+.+-.++||++||+.|+.-++-
T Consensus 237 PTL~GSl~r~~eli~qAh~lGl~AVIS 263 (321)
T COG1441 237 PTLTGSLQRVRELVQQAHALGLTAVIS 263 (321)
T ss_pred ccchhhHHHHHHHHHHHHhcCceeEee
Confidence 456789999999999999999987664
No 179
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=60.91 E-value=20 Score=36.53 Aligned_cols=36 Identities=8% Similarity=0.206 Sum_probs=29.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCC
Q 014447 80 YDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRT 117 (424)
Q Consensus 80 ~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~ 117 (424)
..++ +-++.++..+.++.+++.|++ |-+|+.+.-.+
T Consensus 179 ~~l~--R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPg 215 (453)
T PRK13347 179 KAIN--RIQPEEMVARAVELLRAAGFESINFDLIYGLPH 215 (453)
T ss_pred HHhC--CCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCC
Confidence 3444 447889999999999999997 88999887554
No 180
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=60.42 E-value=18 Score=36.56 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=39.3
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL-ADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi-lD~v~NH~~~ 118 (424)
++|..|+++||+.|.|.- + ..+......+. -. -+.++..+.++.+++.|+.+| +|+.++..+.
T Consensus 142 e~l~~l~~~G~~rvslGv-Q------S~~~~~L~~l~-R~-~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~q 205 (430)
T PRK08208 142 EKLALLAARGVNRLSIGV-Q------SFHDSELHALH-RP-QKRADVHQALEWIRAAGFPILNIDLIYGIPGQ 205 (430)
T ss_pred HHHHHHHHcCCCEEEEec-c------cCCHHHHHHhC-CC-CCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 445555666666555531 1 11111223344 22 378899999999999999865 9999876653
No 181
>PRK05660 HemN family oxidoreductase; Provisional
Probab=60.35 E-value=20 Score=35.57 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=43.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEE-EEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC-LADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~V-ilD~v~NH~~~ 118 (424)
++|..|+++||+.|.|.. ...+..-+..+. +..+.++..+-++.+++.|++. -+|+.+...+.
T Consensus 108 e~l~~Lk~~Gv~risiGv-------qS~~~~~L~~l~--r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgq 171 (378)
T PRK05660 108 DRFVGYQRAGVNRISIGV-------QSFSEEKLKRLG--RIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQ 171 (378)
T ss_pred HHHHHHHHcCCCEEEecc-------CcCCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 667777778888777753 112222233444 4468899999999999999985 49999876653
No 182
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=59.48 E-value=64 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|.|++ |.+..+.|.-..++++..
T Consensus 141 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 141 EELAEQAKLMES-YGADCVYVTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCcCHHHHHHHHHHH
Confidence 567777777776 89998887 666677777666665543
No 183
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=58.73 E-value=1.4e+02 Score=32.12 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=70.8
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCH-HHHHHHHHHHH-HcCCEEEEeeecccCCCCCCCC
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQ-ADLKSLIQAFR-QKGIKCLADMVINHRTAERKDG 123 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~-edl~~Lv~~aH-~~Gi~VilD~v~NH~~~~~~~~ 123 (424)
-.-|++++++|+++|+|-.+.... ..|-. .-.|=.+ .++==. +-|-+..=+++ +.|++|..=+.+=-..-....+
T Consensus 337 ~~l~~ri~~~~~~~VyLqafadp~-gdg~~-~~lYFpn-r~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~~~ 413 (672)
T PRK14581 337 DKLVQRISDLRVTHVFLQAFSDPK-GDGNI-RQVYFPN-RWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPSLP 413 (672)
T ss_pred HHHHHHHHhcCCCEEEEEeeeCCC-CCCce-eeEEecC-CcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCcccc
Confidence 345678999999999999876542 23311 1111123 233333 44666656777 4599999777664221100000
Q ss_pred CcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 124 RGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 124 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
. ...|... .+.... .-.+.+.|..-+|++|+.|.++..-+..--.+||+=+.-
T Consensus 414 ~-------------~~~~~~~----~~~~~~----------~~~~y~rlspf~~~~~~~i~~iy~DLa~~~~~~GilfhD 466 (672)
T PRK14581 414 R-------------ITRIDPK----TGKTSI----------DPDQYRRLSPFNPEVRQRIIDIYRDMAYSAPIDGIIYHD 466 (672)
T ss_pred h-------------hhhcccc----cCcccc----------CCCCccccCCCCHHHHHHHHHHHHHHHhcCCCCeEEecc
Confidence 0 0001000 000000 001223377778999999999999999844899988753
No 184
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=58.52 E-value=30 Score=29.32 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=39.8
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.||.-+.+-.+-|+++||.+-- .|= +.--|.|.+.++++.++++|++||+-
T Consensus 13 SD~~~mk~Aa~~L~~fgi~ye~-------------------~Vv-SAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 13 SDWDTMKKAAEILEEFGVPYEV-------------------RVV-SAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred chHHHHHHHHHHHHHcCCCeEE-------------------EEE-eccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 4677777888889999986533 122 44457889999999999999999975
No 185
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=58.26 E-value=15 Score=27.48 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=16.9
Q ss_pred ecCCCEEEEEE---CCEEEEEECCCCC
Q 014447 377 ASDADVYIAAI---GDRVIMKIGPKMD 400 (424)
Q Consensus 377 ~~~~~v~~~~r---~~~~lv~ln~~~~ 400 (424)
...+++++|.| ++.++|++|++..
T Consensus 6 ~P~~gvYvYfR~~~~~tVmVilN~n~~ 32 (78)
T PF10438_consen 6 APQDGVYVYFRYYDGKTVMVILNKNDK 32 (78)
T ss_dssp --BTTEEEEEEEESSEEEEEEEE-SSS
T ss_pred CccCCEEEEEEEcCCCEEEEEEcCCCC
Confidence 45789999999 5688888888543
No 186
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.66 E-value=79 Score=30.97 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.+|++++++|++|-+++ +-++|.+..
T Consensus 77 i~~~~~l~~~vh~~G~~i~--~QL~h~G~~ 104 (353)
T cd04735 77 IPGLRKLAQAIKSKGAKAI--LQIFHAGRM 104 (353)
T ss_pred hHHHHHHHHHHHhCCCeEE--EEecCCCCC
Confidence 6789999999999999988 667898764
No 187
>PRK12677 xylose isomerase; Provisional
Probab=57.36 E-value=1.5e+02 Score=29.52 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=35.1
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCC-CCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKY-GSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~-Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
++.+.++.++++|+.+|.+..-. + ...+ ... ......+++.+++.+.||+|.+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~---------l---~p~~-~~~~~~~~~~~~lk~~l~~~GL~v~~ 85 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDD---------L---VPFG-ATDAERDRIIKRFKKALDETGLVVPM 85 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccc---------c---CCCC-CChhhhHHHHHHHHHHHHHcCCeeEE
Confidence 67899999999999999984210 0 0111 111 1123578888889999999653
No 188
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=57.26 E-value=56 Score=33.13 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee-ecccCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM-VINHRTA 118 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~-v~NH~~~ 118 (424)
|.||.+++|+=|+-||||||..+ ++.|++.
T Consensus 248 T~eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 248 TREDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred cHHHHHHHHHHHHhccceeeecccCCccccc
Confidence 68999999999999999999876 4567753
No 189
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=56.61 E-value=1.7e+02 Score=28.46 Aligned_cols=71 Identities=10% Similarity=0.013 Sum_probs=43.7
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
+..++.....+.=|+.-|..-....++.+.++. .. -.+. .. .-.+.+++|++++|++|-++++=+ +|.+..
T Consensus 37 ~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~-~~-~~~~-~d-~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~~ 107 (337)
T PRK13523 37 NFHLIHYGTRAAGQVGLVIVEATAVLPEGRISD-KD-LGIW-DD-EHIEGLHKLVTFIHDHGAKAAIQL--AHAGRK 107 (337)
T ss_pred HHHHHHHHHHHcCCCeEEEECCeEECccccCCC-Cc-eecC-CH-HHHHHHHHHHHHHHhcCCEEEEEc--cCCCCC
Confidence 344555555566788888877655554433221 10 1111 00 126789999999999999998765 787654
No 190
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=56.53 E-value=27 Score=32.45 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=46.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC--------cccccCCCCCCC--------CCHHHHHHHHHHHHHc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--------PGRLYDLDASKY--------GSQADLKSLIQAFRQK 103 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~~--------Gt~edl~~Lv~~aH~~ 103 (424)
.+...+...+..|+++||..-. -.=+.||+ +.|+-+|| ..| ....=++.+|+.||+.
T Consensus 133 ~~~~~~~~~l~~L~~~G~~ial------DDFGtG~ssl~~L~~l~~d~iKID-~~fi~~i~~~~~~~~iv~~iv~la~~l 205 (256)
T COG2200 133 DDLDTALALLRQLRELGVRIAL------DDFGTGYSSLSYLKRLPPDILKID-RSFVRDLETDARDQAIVRAIVALAHKL 205 (256)
T ss_pred cCHHHHHHHHHHHHHCCCeEEE------ECCCCCHHHHHHHhhCCCCeEEEC-HHHHhhcccCcchHHHHHHHHHHHHHC
Confidence 4566777888999999974322 11134444 34455566 332 2345699999999999
Q ss_pred CCEEEEeeecc
Q 014447 104 GIKCLADMVIN 114 (424)
Q Consensus 104 Gi~VilD~v~N 114 (424)
|++||..-|=+
T Consensus 206 ~~~vvaEGVEt 216 (256)
T COG2200 206 GLTVVAEGVET 216 (256)
T ss_pred CCEEEEeecCC
Confidence 99999988754
No 191
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=56.44 E-value=1.8e+02 Score=27.39 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 220 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 220 (424)
+++.+.++...+ .|+|.+++ |.+..+.|+-..++++..+
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 188 (275)
T cd07937 149 EYYVKLAKELED-MGADSICIKDMAGLLTPYAAYELVKALK 188 (275)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 467777777777 99999997 7777778877777755544
No 192
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.27 E-value=1.1e+02 Score=29.48 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=37.8
Q ss_pred HHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 51 DLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
..+.=|+.-|..-...-++...+|... . .+. .. ...+.+|++++++|++|-++++= ++|.+...
T Consensus 41 ~ra~gg~glii~e~~~v~~~~~~~~~~-~-~~~-~~-~~~~~~~~~~~~vh~~g~~~~~Q--l~h~G~~~ 104 (327)
T cd02803 41 ERAKGGVGLIITEAAYVDPEGKGYPGQ-L-GIY-DD-EQIPGLRKLTEAVHAHGAKIFAQ--LAHAGRQA 104 (327)
T ss_pred HHhCcCCcEEEECcEEEcCcccCCCCC-c-CcC-CH-HHHHHHHHHHHHHHhCCCHhhHH--hhCCCcCC
Confidence 334457777776655544443332110 0 011 00 12678999999999999998754 58887543
No 193
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=56.13 E-value=29 Score=34.27 Aligned_cols=59 Identities=20% Similarity=0.171 Sum_probs=40.1
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|+..+.+.+. + .+.+|.+.|++. ..|.. .. +.+.+++|.+-|+++|+-||+|-|....+
T Consensus 164 d~~~l~~~l~---~-~~~avivep~~~---~~G~~-----~~------~~~~l~~l~~l~~~~g~~lI~DEv~~g~g 222 (389)
T PRK01278 164 DIEALKAAIT---P-NTAAILIEPIQG---EGGIR-----PA------PDEFLKGLRQLCDENGLLLIFDEVQCGMG 222 (389)
T ss_pred CHHHHHHhhC---C-CeEEEEEecccC---CCCCc-----CC------CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 4444444442 1 577888888742 12211 12 36799999999999999999999986543
No 194
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=55.80 E-value=28 Score=35.42 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=41.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi-~VilD~v~NH~~~ 118 (424)
+.|..|+++|++.|.|.. ...+..-+..+. +..+.++..+.++.+++.|+ .|-+|+.+...+.
T Consensus 152 e~l~~l~~aG~~risiGv-------qS~~~~~L~~l~--r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (453)
T PRK09249 152 EMLDALRELGFNRLSLGV-------QDFDPEVQKAVN--RIQPFEFTFALVEAARELGFTSINIDLIYGLPKQ 215 (453)
T ss_pred HHHHHHHHcCCCEEEECC-------CCCCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCC
Confidence 445556666666555542 111122233444 34688999999999999999 8999999886653
No 195
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=55.63 E-value=33 Score=30.51 Aligned_cols=45 Identities=18% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKC 107 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~V 107 (424)
.+...+..||++|+..|=..|+- -+-.+|||+.+.++|-++|+.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~-------------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG-------------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T-------------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecC-------------------CcccHHHHHHHHHHHHHcCcee
Confidence 45667889999999999888743 1225789999999999999987
No 196
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=55.58 E-value=11 Score=37.74 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=61.5
Q ss_pred CCCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC----------CCCCCcccccCCCCCCCC
Q 014447 19 PFTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA----------PQGYMPGRLYDLDASKYG 88 (424)
Q Consensus 19 ~~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~----------~~gY~~~d~~~id~~~~G 88 (424)
.+.+++|+.-..+-. ..+..-+..-++.|+...++..- +... +..-....+..+- ...|
T Consensus 108 ~~~gdeIv~s~~EH~---------sn~~pw~~~~~~~Ga~v~~i~~~-~~g~~~~~~~~~~i~~~Tklvais~vS-n~tG 176 (405)
T COG0520 108 LKPGDEIVVSDLEHH---------SNIVPWQELAKRTGAKVRVIPLD-DDGLLDLDALEKLITPKTKLVALSHVS-NVTG 176 (405)
T ss_pred hcCCCEEEEccCcch---------hhHHHHHHHHHhcCcEEEEEecC-CCCCcCHHHHHHhcCCCceEEEEECcc-cccc
Confidence 445667777655411 11222333445568877777643 2211 1223344456677 8999
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeee--cccCCCCCCCCCcceeecCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMV--INHRTAERKDGRGIYCIFEG 132 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v--~NH~~~~~~~~~~~~~~~~~ 132 (424)
+..+++++++.||++|..|++|.+ +-|.-.+-..-..+++.|+.
T Consensus 177 ~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsg 222 (405)
T COG0520 177 TVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSG 222 (405)
T ss_pred ccchHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcc
Confidence 999999999999999999999976 33332222222344555544
No 197
>PRK05967 cystathionine beta-lyase; Provisional
Probab=55.25 E-value=21 Score=35.66 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=43.1
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++..|+...++-|-.. ..-...-...-...+. ...++..|++++++.||++|+-||+|-++.
T Consensus 123 ~l~~~Gi~v~~vd~~~~e~l~~al~~~TklV~lesPs-NP~l~v~dl~~I~~la~~~g~~vvVD~t~a 189 (395)
T PRK05967 123 MLKRLGVEVEYYDPEIGAGIAKLMRPNTKVVHTEAPG-SNTFEMQDIPAIAEAAHRHGAIVMMDNTWA 189 (395)
T ss_pred HHHhcCeEEEEeCCCCHHHHHHhcCcCceEEEEECCC-CCCCcHHHHHHHHHHHHHhCCEEEEECCcc
Confidence 45778998888754210 0001112233344455 557899999999999999999999998884
No 198
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=54.91 E-value=30 Score=35.43 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++..+.++.||+.||.|.+++++..-
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlP 348 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLP 348 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCC
Confidence 6789999999999999999999998644
No 199
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=54.90 E-value=32 Score=33.72 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=40.6
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~ 117 (424)
++|+.++++||+.|.|.. + ..+..-...+. +-.+.++..+.++.+++.|+. |-+|+.++-.+
T Consensus 99 e~l~~l~~~GvnRiSiGv-Q------S~~~~~L~~lg--R~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPg 161 (350)
T PRK08446 99 AWLKGMKNLGVNRISFGV-Q------SFNEDKLKFLG--RIHSQKQIIKAIENAKKAGFENISIDLIYDTPL 161 (350)
T ss_pred HHHHHHHHcCCCEEEEec-c------cCCHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCC
Confidence 566666666777666532 1 11112122333 445788999999999999997 66999997554
No 200
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=54.76 E-value=1.3e+02 Score=29.39 Aligned_cols=37 Identities=11% Similarity=0.133 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 218 (424)
+++.+.++...+ +|+|.+++ |.+..+.|+-..++++.
T Consensus 144 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 144 EKLAEQAKLMES-YGAQCVYVVDSAGALLPEDVRDRVRA 181 (337)
T ss_pred HHHHHHHHHHHh-CCCCEEEeCCCCCCCCHHHHHHHHHH
Confidence 467777777776 99999994 88888877766666443
No 201
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=54.67 E-value=55 Score=33.51 Aligned_cols=65 Identities=9% Similarity=0.264 Sum_probs=45.6
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+.-..|-++-+|+||+++--++=-+.-.-+.|.. .+| + -..+=.++||++|.++||+-|+.|.
T Consensus 51 d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-----~vN-~--~gl~~Y~~lid~l~~~GI~P~VTL~ 115 (469)
T PRK13511 51 DFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYG-----EVN-P--KGVEYYHRLFAECHKRHVEPFVTLH 115 (469)
T ss_pred chhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCC-----CcC-H--HHHHHHHHHHHHHHHcCCEEEEEec
Confidence 457778889999999999998876433211111211 133 1 1366789999999999999998764
No 202
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=54.47 E-value=27 Score=34.49 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 86 KYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
+-.+.++..+.++.+++.|+. |-+|+.+...+.
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgq 164 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQ 164 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCC
Confidence 345788999999999999998 679999886654
No 203
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=54.39 E-value=27 Score=35.63 Aligned_cols=63 Identities=13% Similarity=0.207 Sum_probs=39.7
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
+.|..|+++|++.|.|.. ...+..-+..+. +-++.++..+.++.+++.|++ |-+|+.+...+.
T Consensus 152 e~l~~lk~~G~~risiGv-------qS~~~~~l~~l~--r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgq 215 (455)
T TIGR00538 152 DVIDALRDEGFNRLSFGV-------QDFNKEVQQAVN--RIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQ 215 (455)
T ss_pred HHHHHHHHcCCCEEEEcC-------CCCCHHHHHHhC--CCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCC
Confidence 445555555555555542 111222223344 336789999999999999997 779998876543
No 204
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=54.30 E-value=1e+02 Score=29.21 Aligned_cols=63 Identities=17% Similarity=0.052 Sum_probs=39.3
Q ss_pred hhhh-HHHHcCCCEEEeCCCCCCCCCCCCCcccccCCC-CCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 47 NSIP-DLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLD-ASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 47 ~~L~-ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id-~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.+|. |-++-.++.|-|.=+...+. .|+-..++...+ +..++.=.++.+-|+.|+++|+||+|-
T Consensus 14 ~~L~~~C~~~~~dii~i~Fl~~~~~-~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLS 78 (280)
T cd02877 14 GSLREYCDTGNYDIVNISFLNVFGS-GGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLS 78 (280)
T ss_pred CCHHHHhCCCCccEEEEEeEcccCC-CCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEE
Confidence 4454 33555688888875555433 444444443332 011223468999999999999999984
No 205
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=54.06 E-value=24 Score=35.33 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
++|..|++.||+.|.|.. + ..+..-+..++ +-.|.++..+.++.+++.|+. |-+|+.+..-+.
T Consensus 116 e~l~~l~~~GvnrislGv-Q------S~~d~~L~~l~--R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgq 179 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGV-Q------AFQDELLALCG--RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQ 179 (400)
T ss_pred HHHHHHHHCCCCEEEEEc-c------cCCHHHHHHhC--CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 456666666666666542 1 11122223344 445788999999999999999 789999986543
No 206
>PLN02389 biotin synthase
Probab=53.77 E-value=40 Score=33.49 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=28.7
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 79 ~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
|..+. +. ++.++-.+.++.||+.||+|..=+++.|
T Consensus 203 y~~i~-~~-~s~e~rl~ti~~a~~~Gi~v~sg~IiGl 237 (379)
T PLN02389 203 YPNVI-TT-RSYDDRLETLEAVREAGISVCSGGIIGL 237 (379)
T ss_pred hCCcC-CC-CCHHHHHHHHHHHHHcCCeEeEEEEECC
Confidence 44454 32 2788999999999999999999999988
No 207
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=53.52 E-value=2.4e+02 Score=28.00 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccC-CC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHR-TA 118 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~-~~ 118 (424)
.+.||++++++|++|-++++=+ +|. +.
T Consensus 82 i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 4689999999999999999554 686 54
No 208
>PLN02808 alpha-galactosidase
Probab=53.10 E-value=15 Score=36.32 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=37.8
Q ss_pred HHHhhhhH-----HHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIPD-----LSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~y-----lk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
-|++..+. |+++|+++|.|=--+... ...|. -.+|+.+|- ..++.|++.+|++|||.=+
T Consensus 50 ~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~-----~~~d~~rFP--~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 50 LIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGN-----LVPKASTFP--SGIKALADYVHSKGLKLGI 115 (386)
T ss_pred HHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCC-----EeeChhhcC--ccHHHHHHHHHHCCCceEE
Confidence 34444554 799999999985444322 12222 233422443 3699999999999999765
No 209
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=52.94 E-value=22 Score=34.78 Aligned_cols=84 Identities=13% Similarity=0.152 Sum_probs=50.4
Q ss_pred CCCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC----CCCCCCcccccCCCCCCCCCHHHHHH
Q 014447 20 FTSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV----APQGYMPGRLYDLDASKYGSQADLKS 95 (424)
Q Consensus 20 ~~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~----~~~gY~~~d~~~id~~~~Gt~edl~~ 95 (424)
=++++++....= .||++.-+.- -||.+||++.++-|.-... -...-...-...|. ..-+..-|+.+
T Consensus 99 ~aGD~iVss~~L------YGGT~~lf~~---tl~~~Gi~v~fvd~~d~~~~~~aI~~nTkavf~Etig-NP~~~v~Die~ 168 (426)
T COG2873 99 GAGDNIVSSSKL------YGGTYNLFSH---TLKRLGIEVRFVDPDDPENFEAAIDENTKAVFAETIG-NPGLDVLDIEA 168 (426)
T ss_pred cCCCeeEeeccc------cCchHHHHHH---HHHhcCcEEEEeCCCCHHHHHHHhCcccceEEEEecc-CCCccccCHHH
Confidence 345555554432 3788744332 2699999999998754210 00111111122333 44445667999
Q ss_pred HHHHHHHcCCEEEEeeec
Q 014447 96 LIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 96 Lv~~aH~~Gi~VilD~v~ 113 (424)
+.+-||++|+-+|+|=.+
T Consensus 169 ia~iAh~~gvpliVDNT~ 186 (426)
T COG2873 169 IAEIAHRHGVPLIVDNTF 186 (426)
T ss_pred HHHHHHHcCCcEEEecCC
Confidence 999999999999999444
No 210
>PLN03231 putative alpha-galactosidase; Provisional
Probab=52.32 E-value=2.4e+02 Score=27.73 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC---HH----HHHHHHHhcCC-CeEEee
Q 014447 171 DIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA---PS----ITKVYMENTSP-DFAVGE 227 (424)
Q Consensus 171 dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~---~~----~~~~~~~~~~p-~~~v~E 227 (424)
-+|..++-.+++....++.+.+ -|||=+-+|....-. .+ +-+.+.+..|| +|.+.+
T Consensus 153 ~v~~~~~gaq~y~~~~a~~fA~-WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc~ 216 (357)
T PLN03231 153 GVNTSSEGGKLFIQSLYDQYAS-WGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLSP 216 (357)
T ss_pred cccccchhHHHHHHHHHHHHHH-hCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEecC
Confidence 3788999999999999999998 999999999764321 11 22233444588 556654
No 211
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=52.24 E-value=34 Score=33.80 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=41.0
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
+.|..|+++|++.|.|.- ++ .+..-+..++ +-.+.++..+-++.+++.|++ |-+|+.+.-.+.
T Consensus 100 e~l~~l~~~G~~rvsiGv--qS-----~~d~~L~~l~--R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgq 163 (374)
T PRK05799 100 EKLKILKSMGVNRLSIGL--QA-----WQNSLLKYLG--RIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQ 163 (374)
T ss_pred HHHHHHHHcCCCEEEEEC--cc-----CCHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Confidence 456667777777666643 11 1111122233 334788999999999999997 779999875543
No 212
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.09 E-value=41 Score=31.04 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+.++.+++++.||++||++++=+-++
T Consensus 114 ~~~~~~~~~~~~~~~Gl~~~~~v~p~ 139 (244)
T PRK13125 114 YPDDLEKYVEIIKNKGLKPVFFTSPK 139 (244)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999976664
No 213
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=51.80 E-value=12 Score=35.57 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 86 KYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..|...+++++++.||++|+.|++|-+
T Consensus 165 ~~G~~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 165 YYGICYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred CCCEecCHHHHHHHHHhcCCeEEEECc
Confidence 368888999999999999999999987
No 214
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.47 E-value=1.7e+02 Score=28.48 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 218 (424)
+++.+.++...+ +|+|.|++ |.+..+.|+-..++++.
T Consensus 143 e~l~~~a~~~~~-~Ga~~i~i~DT~G~~~P~~v~~~v~~ 180 (333)
T TIGR03217 143 EKLAEQAKLMES-YGADCVYIVDSAGAMLPDDVRDRVRA 180 (333)
T ss_pred HHHHHHHHHHHh-cCCCEEEEccCCCCCCHHHHHHHHHH
Confidence 467777777766 99999887 77777777666655443
No 215
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=51.46 E-value=42 Score=27.05 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=38.4
Q ss_pred HHHHcCCCEEEeCCCCCCCC-CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 51 DLSNAGITHVWLPPPSQSVA-PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~~-~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+..+|...+.+.+...... .......|..-+= +.=|...+..+.++.||++|++||+
T Consensus 21 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 21 TLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAI-SNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HhhcCCCceEEcccchhhccccCcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 45678999988865422111 1122333333333 6667889999999999999999875
No 216
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=51.14 E-value=45 Score=28.83 Aligned_cols=48 Identities=23% Similarity=0.296 Sum_probs=32.5
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+-|+..|+++|.+== +-+ +=.-| ...+|+ ++++.+++++++||+|++
T Consensus 20 ~~~L~~~Gikgvi~Dl----------DNT-Lv~wd-~~~~tp-e~~~W~~e~k~~gi~v~v 67 (175)
T COG2179 20 PDILKAHGIKGVILDL----------DNT-LVPWD-NPDATP-ELRAWLAELKEAGIKVVV 67 (175)
T ss_pred HHHHHHcCCcEEEEec----------cCc-eeccc-CCCCCH-HHHHHHHHHHhcCCEEEE
Confidence 4688999999997520 000 11123 444554 599999999999999985
No 217
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=50.57 E-value=43 Score=30.96 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHhhhhHHHHcCCCEEEeCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPP 65 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi 65 (424)
+.+.|+.++++||++|.|...
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~ 37 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP 37 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC
Confidence 567899999999999998653
No 218
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=50.45 E-value=29 Score=37.00 Aligned_cols=61 Identities=7% Similarity=-0.013 Sum_probs=40.7
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+.+.|.-.|.+|+|+|.+..+.=+--.-.=...||.. . |.. +++.|++.|++|||==.+
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~--------~-D~~-~l~~a~~~Gl~vil~t~P 90 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTW--------L-DEI-FLERAYKAGLYVILRTGP 90 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCccc--------c-hHH-HHHHHHhcCceEEEecCC
Confidence 567889999999999999997764221000001222222 2 244 899999999999986644
No 219
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.15 E-value=10 Score=32.83 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEe
Q 014447 89 SQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD 110 (424)
+++++++||+.||++|+++-|-
T Consensus 165 ~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 165 DEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred cHHHHHHHHHHHHHcchHHHhc
Confidence 4789999999999999998664
No 220
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=49.14 E-value=26 Score=33.70 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
...|+.++++++.+.||++|+.|++|-+...
T Consensus 159 ~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~ 189 (345)
T cd06450 159 TDTGAIDPLEEIADLAEKYDLWLHVDAAYGG 189 (345)
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEechhhH
Confidence 5578888999999999999999999988543
No 221
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.10 E-value=52 Score=31.71 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=63.0
Q ss_pred CceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCC-C-------------C-----CC-CCC------Cc
Q 014447 23 PALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ-S-------------V-----AP-QGY------MP 76 (424)
Q Consensus 23 ~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~-~-------------~-----~~-~gY------~~ 76 (424)
..+.+|++. ++.. -|..+-.+++..|.+.|++-|-++=+-. . | .. +.+ ..
T Consensus 20 aPI~VQSMT-nT~T---~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vPLVaDiHf~~rla~~~~~~g 95 (361)
T COG0821 20 APIVVQSMT-NTDT---ADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVPLVADIHFDYRLALEAAECG 95 (361)
T ss_pred CceEEEecc-CCCc---ccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCEEEEeeccHHHHHHhhhcC
Confidence 357889885 5443 3788899999999999999999873321 0 0 00 110 01
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 77 ~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.|=+.|+|..+|..+.|+.+|++|.++|+-|=+= .||-|
T Consensus 96 ~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIG--VN~GS 134 (361)
T COG0821 96 VDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIG--VNAGS 134 (361)
T ss_pred cceEEECCcccCcHHHHHHHHHHHHHcCCCEEEe--cccCc
Confidence 4557788888999999999999999999876543 35544
No 222
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=49.01 E-value=56 Score=28.43 Aligned_cols=59 Identities=7% Similarity=-0.051 Sum_probs=40.6
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH---HcCCEEEEeeecccC
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR---QKGIKCLADMVINHR 116 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH---~~Gi~VilD~v~NH~ 116 (424)
....++...+.+++|+++|.+.|++- +..+ . +.+.+.+.++++. +.++-|++...+.++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~------------~~~~-~---~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~ 125 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIG------------SLKE-G---DWEEVLEEIAAVVEAADGGLPLKVILETRGL 125 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHH------------HHhC-C---CHHHHHHHHHHHHHHhcCCceEEEEEECCCC
Confidence 78899999999999999999987541 1111 1 2344444444443 359999999887654
No 223
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.98 E-value=32 Score=31.36 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=38.9
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+|-...++.++.+...|+++|.+.|+.. +.+..++++|.++||+||+
T Consensus 38 ~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~-----------------------~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 38 QNDPEEQIEQIEQAISQGVDGIIVSPVDP-----------------------DSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp TTTHHHHHHHHHHHHHTTESEEEEESSST-----------------------TTTHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCEEEecCCCH-----------------------HHHHHHHHHHhhcCceEEE
Confidence 46678888889999999999999887432 2456788899999999997
No 224
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.80 E-value=44 Score=30.84 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.|++++++++|+++||+.++=+.++-
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 36899999999999999998777753
No 225
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=48.77 E-value=31 Score=31.47 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=40.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-++......++...++|++.|-+.--... .+ . --..+++++++++||+.|+++|+|...
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~-------------~~-~-~~~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGS-------------EE-E-REMLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCC-------------ch-H-HHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 35666677788899999998844321110 00 0 002568999999999999999997644
No 226
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=48.29 E-value=33 Score=28.11 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=42.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCC---------CCCccccc--CCCCCCCCCHHHHHHHHHHHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQ---------GYMPGRLY--DLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~---------gY~~~d~~--~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
....+.+-|+.|.+.|++.|.+.|.+-.++-+ .|. ..+. .+.+|-+.+.+|+..+++++++
T Consensus 54 ~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~-~~~~~i~~g~pLl~~~~d~~~v~~al~~ 125 (127)
T cd03412 54 EVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFK-KGFKKIKLGRPLLYSPEDYEEVAAALKD 125 (127)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHh-CCCceEEEccCCCCCHHHHHHHHHHHHh
Confidence 35667888999999999999999998765321 122 1111 1223666678899999888765
No 227
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=48.28 E-value=2.8e+02 Score=27.31 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.|+++++++|++|-++++=+ +|.|..
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr~ 104 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL--WHVGAM 104 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec--cCCCCC
Confidence 5789999999999999988765 787754
No 228
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=47.72 E-value=1.1e+02 Score=29.40 Aligned_cols=67 Identities=21% Similarity=0.204 Sum_probs=44.3
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCC-CCCcccccCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeeeccc
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQ-GYMPGRLYDLDASKYGSQADLKSLIQAFRQ--KGIKCLADMVINH 115 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~-gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~--~Gi~VilD~v~NH 115 (424)
.++.+.+.+..+.++|+++|-|-|+-+.. ... |-.. +..| | -+++-|+++++ -.|-||.|+.+..
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a---~~~~----g---~v~~air~iK~~~pdl~vi~Dvclc~ 118 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAA---DDED----G---PVIQAIKLIREEFPELLIACDVCLCE 118 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccc---cCCC----C---hHHHHHHHHHHhCCCcEEEEeeeccC
Confidence 47899999999999999999999985321 111 2111 1111 2 24445555554 4899999999975
Q ss_pred CC
Q 014447 116 RT 117 (424)
Q Consensus 116 ~~ 117 (424)
.+
T Consensus 119 YT 120 (320)
T cd04824 119 YT 120 (320)
T ss_pred CC
Confidence 53
No 229
>PRK05939 hypothetical protein; Provisional
Probab=47.71 E-value=25 Score=35.08 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|+..+++.+.-. ..-...-...-...+. ...|...|++++++.||++|+.||+|-+.
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~-NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIA-NPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCC-CCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 46778998887755310 0001111222234455 67889999999999999999999999865
No 230
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=47.68 E-value=44 Score=33.24 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCC-C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.....-+..++..|+..+++.+-.... . .......-...+. ...|...+++++.+.||++|+.|++|-+
T Consensus 102 h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~-n~tG~~~~~~~I~~l~~~~g~~livD~a 180 (402)
T TIGR02006 102 HKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVN-NEIGVIQDIAAIGEICRERKVFFHVDAA 180 (402)
T ss_pred cHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCC-cCceecccHHHHHHHHHHcCCEEEEEcc
Confidence 4444444456677899888874321110 0 1122333345566 6789999999999999999999999988
Q ss_pred c
Q 014447 113 I 113 (424)
Q Consensus 113 ~ 113 (424)
-
T Consensus 181 ~ 181 (402)
T TIGR02006 181 Q 181 (402)
T ss_pred h
Confidence 4
No 231
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=47.54 E-value=91 Score=30.41 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=61.3
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCC------------CC---------C--------CC
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ------------SV---------A--------PQ 72 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~------------~~---------~--------~~ 72 (424)
++.+.+|++. .+.. -|...-.+++..|.+.|++-|-+.=+-. ++ + ..
T Consensus 25 ~~Pi~VQSMt-~t~T---~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvADIHFd~~lAl~a~~~ 100 (360)
T PRK00366 25 DAPIVVQSMT-NTDT---ADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVADIHFDYRLALAAAEA 100 (360)
T ss_pred CCcEEEEecC-CCCc---hhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEecCCCHHHHHHHHHh
Confidence 4468889986 4443 3688888899999999999999874322 00 1 11
Q ss_pred CCCcccccCCCCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 73 GYMPGRLYDLDASKYGS-QADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 73 gY~~~d~~~id~~~~Gt-~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|-+- -.|+|..+|+ .+.++.+|++|+++|+-|=+= .||-|
T Consensus 101 G~~~---iRINPGNig~~~~~v~~vv~~ak~~~ipIRIG--vN~GS 141 (360)
T PRK00366 101 GADA---LRINPGNIGKRDERVREVVEAAKDYGIPIRIG--VNAGS 141 (360)
T ss_pred CCCE---EEECCCCCCchHHHHHHHHHHHHHCCCCEEEe--cCCcc
Confidence 2222 2577888999 999999999999999876433 35544
No 232
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=47.21 E-value=48 Score=34.23 Aligned_cols=27 Identities=22% Similarity=0.446 Sum_probs=18.6
Q ss_pred CCcceecccCCCCCcCcccCCCCchhH
Q 014447 299 PQNAVTFIDNHDTGSTQRLWPFPSDKV 325 (424)
Q Consensus 299 ~~~~~~f~~nHD~~r~~~~~~~~~~~~ 325 (424)
+.+.|.++.+||++-+.+-+.......
T Consensus 394 ~~nsva~tsTHD~ptl~gww~~~~~~~ 420 (520)
T COG1640 394 PPNSVATTSTHDLPTLRGWWEELDEEL 420 (520)
T ss_pred ccceeEEeccCCChhHHHHHhCCCHHH
Confidence 457799999999987766554333333
No 233
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=46.98 E-value=79 Score=31.18 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
-|+-+...+-++.+++.|++|.+-+|++
T Consensus 137 ~g~f~~~~~~i~~l~~~g~~v~i~~vv~ 164 (378)
T PRK05301 137 KGAFAKKLAVARLVKAHGYPLTLNAVIH 164 (378)
T ss_pred CchHHHHHHHHHHHHHCCCceEEEEEee
Confidence 3567777778888999999988777664
No 234
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=46.87 E-value=1.3e+02 Score=28.59 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|.+++ |.+....|.-..++++..
T Consensus 155 ~~~~~~~~~~~~-~G~d~i~l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 155 EAVADVAERLFA-LGCYEISLGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred HHHHHHHHHHHH-cCCcEEEeccccCccCHHHHHHHHHHH
Confidence 578888888887 99999887 777777776556654443
No 235
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=46.64 E-value=44 Score=33.33 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=43.9
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
++|..|+++||+.|.|.. + + .+..-+..+. +..+.++..+.++.|++.+..|-+|+++...+.
T Consensus 112 e~l~~l~~~GvnRiSiGv-Q-S-----~~d~~L~~lg--R~h~~~~~~~ai~~~~~~~~~v~~DlI~GlPgq 174 (390)
T PRK06582 112 EKFKAFKLAGINRVSIGV-Q-S-----LKEDDLKKLG--RTHDCMQAIKTIEAANTIFPRVSFDLIYARSGQ 174 (390)
T ss_pred HHHHHHHHCCCCEEEEEC-C-c-----CCHHHHHHcC--CCCCHHHHHHHHHHHHHhCCcEEEEeecCCCCC
Confidence 677888888888777753 1 1 1111123333 555788888889999999999999999986654
No 236
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=46.51 E-value=1.1e+02 Score=29.22 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=44.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ--KGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~--~Gi~VilD~v~NH~ 116 (424)
.++.+.+.+..+.++|+++|-|-|+.+.. ...|-. +.+ + =| =+.+-|+++++ -.|-||.|+.+...
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~-----A~~-~-~g---~v~~air~iK~~~p~l~vi~DVclc~Y 121 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSE-----AYN-P-DN---LVCRAIRAIKEAFPELGIITDVALDPY 121 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCccccc-----ccC-C-CC---hHHHHHHHHHHhCCCcEEEEeeeccCC
Confidence 47899999999999999999999985321 112211 111 1 11 24455555555 48999999999765
Q ss_pred C
Q 014447 117 T 117 (424)
Q Consensus 117 ~ 117 (424)
+
T Consensus 122 T 122 (320)
T cd04823 122 T 122 (320)
T ss_pred C
Confidence 4
No 237
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=46.35 E-value=32 Score=32.09 Aligned_cols=70 Identities=10% Similarity=0.126 Sum_probs=51.5
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCC--------------C---CCC-----------CCCcccccCCCCCCCCCHH
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQS--------------V---APQ-----------GYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~--------------~---~~~-----------gY~~~d~~~id~~~~Gt~e 91 (424)
-+....++.+..|+++|+..|+- |+... | +-. .-...|...+|+.+.|+..
T Consensus 140 ~~~~~a~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 140 WTPKQAIRALRALEDLGLDYVEQ-PLPADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEC-CCCcccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 46888888999999999999985 33221 0 000 1223455567766789999
Q ss_pred HHHHHHHHHHHcCCEEEEe
Q 014447 92 DLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD 110 (424)
+.+++++.|+++|+++++-
T Consensus 219 ~~~~~~~~A~~~gi~~~~~ 237 (265)
T cd03315 219 KAQRVLAVAEALGLPVMVG 237 (265)
T ss_pred HHHHHHHHHHHcCCcEEec
Confidence 9999999999999999874
No 238
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=46.30 E-value=27 Score=33.47 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 014447 90 QADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+.|.+|++.|+++|.+|++|.
T Consensus 145 ~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 145 PDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred HHHHHHHHHHHHhcCCeEEEEC
Confidence 7889999999999999999995
No 239
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=46.23 E-value=65 Score=30.51 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=39.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHH-HHHHHHHc-CCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKS-LIQAFRQK-GIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~-Lv~~aH~~-Gi~VilD~v~ 113 (424)
.+.+..++...+.+++|+++|.++|++ |+.++ .+++.+ +-+-|.+- ++-||+==.+
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~P~------------y~~~~------~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAITPF------------YYKFS------FEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCC------------CCCCC------HHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 468999999999999999999998865 33333 344444 44445566 7888874333
No 240
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=46.18 E-value=49 Score=32.68 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=43.1
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~NH~~~ 118 (424)
++|+.++++||+.|.|.. + + .+..-+..+. +--+.++..+-++.+++.|+. |-+|+.+..-+.
T Consensus 104 ~~l~~l~~~G~nrislGv-Q-S-----~~~~~L~~l~--R~~~~~~~~~ai~~~~~~g~~~v~~Dli~GlPgq 167 (370)
T PRK06294 104 SYIRALALTGINRISIGV-Q-T-----FDDPLLKLLG--RTHSSSKAIDAVQECSEHGFSNLSIDLIYGLPTQ 167 (370)
T ss_pred HHHHHHHHCCCCEEEEcc-c-c-----CCHHHHHHcC--CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCC
Confidence 667888888888887653 1 1 1111123333 333688899999999999996 889999876553
No 241
>PLN02899 alpha-galactosidase
Probab=46.17 E-value=3.9e+02 Score=28.35 Aligned_cols=35 Identities=14% Similarity=0.007 Sum_probs=28.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEecccC
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFVK 205 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~ 205 (424)
...|...+.-++++...++.+.+ -|||=+-+|...
T Consensus 184 ~~vDa~~~~g~a~~~Sla~tfAs-WGVDyLKyD~c~ 218 (633)
T PLN02899 184 MSVNTKLGAGKAFLRSLYDQYAE-WGVDFVKHDCVF 218 (633)
T ss_pred ccccccccchhhhhHHHHHHHHH-hCCCEEEEcCCC
Confidence 34677777778888888888887 999999999764
No 242
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.90 E-value=50 Score=30.77 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=49.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCC-----------------CCCC---C------CCCcccccCCCCCCCCCHHHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQ-----------------SVAP---Q------GYMPGRLYDLDASKYGSQADLK 94 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~-----------------~~~~---~------gY~~~d~~~id~~~~Gt~edl~ 94 (424)
+....++.+..|+++++..|+ -|+.. ..+- + .....|...+++.+.|+..+.+
T Consensus 139 ~~~~A~~~~~~l~~~~i~~iE-qP~~~~d~~~~~~l~~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~ 217 (263)
T cd03320 139 SLEEALAFLEALAAGRIEYIE-QPLPPDDLAELRRLAAGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALL 217 (263)
T ss_pred CHHHHHHHHHhhcccCCceEE-CCCChHHHHHHHHhhcCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHH
Confidence 467777888888888888887 24421 1110 1 1234566677755689999999
Q ss_pred HHHHHHHHcCCEEEEe
Q 014447 95 SLIQAFRQKGIKCLAD 110 (424)
Q Consensus 95 ~Lv~~aH~~Gi~VilD 110 (424)
++++.|+++|+++++-
T Consensus 218 ~i~~~a~~~gi~~~~~ 233 (263)
T cd03320 218 ELAEEARARGIPAVVS 233 (263)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999874
No 243
>PRK14012 cysteine desulfurase; Provisional
Probab=45.84 E-value=68 Score=31.86 Aligned_cols=71 Identities=15% Similarity=0.300 Sum_probs=45.9
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCC-C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.....-...++..|++.+++.+-.... . ...-...-...+. ...|...+++++.+.||++|+.|++|-+
T Consensus 104 ~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~-n~tG~~~~~~~I~~la~~~g~~vivD~a 182 (404)
T PRK14012 104 HKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVN-NEIGVIQDIAAIGEICRERGIIFHVDAA 182 (404)
T ss_pred cHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcC-CCccchhhHHHHHHHHHHcCCEEEEEcc
Confidence 4444444455677799888774321110 0 1112233344455 6689999999999999999999999987
Q ss_pred c
Q 014447 113 I 113 (424)
Q Consensus 113 ~ 113 (424)
-
T Consensus 183 ~ 183 (404)
T PRK14012 183 Q 183 (404)
T ss_pred h
Confidence 4
No 244
>PRK09028 cystathionine beta-lyase; Provisional
Probab=45.66 E-value=29 Score=34.66 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=40.9
Q ss_pred HHHHcCCCEEEeCCCCCC----CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPSQS----VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~----~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++..|+...++.|--.. .-...-...-...+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 120 ~l~~~Gi~v~~v~~~~~e~l~~~l~~~TklV~lesps-NPtg~v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 120 ILKGFGIETTYYDPMIGEGIRELIRPNTKVLFLESPG-SITMEVQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred hhhhcceEEEEECCCCHHHHHHhcCcCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 346688887766542100 000111122234455 557889999999999999999999998874
No 245
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=45.43 E-value=18 Score=33.24 Aligned_cols=25 Identities=8% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.+++++++++||+.||+||+...+.
T Consensus 111 ~~~i~~v~~~~~~~gl~vIlE~~l~ 135 (236)
T PF01791_consen 111 IEEIAAVVEECHKYGLKVILEPYLR 135 (236)
T ss_dssp HHHHHHHHHHHHTSEEEEEEEECEC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecC
Confidence 5789999999999999999996664
No 246
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=45.32 E-value=63 Score=31.24 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=61.9
Q ss_pred CCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCC------------CC----CC-C---CCC------
Q 014447 22 SPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQ------------SV----AP-Q---GYM------ 75 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~------------~~----~~-~---gY~------ 75 (424)
++.+.+|++. ++.. -|...-.+++..|.+.|+.-|-+.=+-. ++ .+ | ..+
T Consensus 17 ~~PI~VQSMt-nt~T---~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~ 92 (346)
T TIGR00612 17 DAPIVVQSMT-NTDT---IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAK 92 (346)
T ss_pred CCcEEEEecC-CCCc---hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHh
Confidence 4568889996 4443 3788888899999999999999874322 00 00 1 110
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 76 PGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 76 ~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
-.|=..|+|..+|+.+-++.+|++|+++|+-|=+= .||-|
T Consensus 93 g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIG--VN~GS 132 (346)
T TIGR00612 93 GVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIG--VNHGS 132 (346)
T ss_pred ccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEe--cCCCC
Confidence 12234566888999999999999999999876433 35544
No 247
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=45.30 E-value=64 Score=31.95 Aligned_cols=29 Identities=3% Similarity=0.022 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
.+.|+++.+.|+++|+-||+|-|..+.+.
T Consensus 207 ~~~l~~l~~l~~~~gi~lI~DEv~~g~g~ 235 (401)
T PRK00854 207 AGYFTRVRELCTANNVTLILDEIQTGLGR 235 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 56799999999999999999999865543
No 248
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.03 E-value=47 Score=31.14 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=37.9
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+.+.++-++++|+++|.|.+-- .+. .+. +.--+.++++.+.+.+.++||+|..
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~----~~~-------~~~-~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDE----SDE-------RLA-RLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCc----ccc-------chh-ccCCCHHHHHHHHHHHHHcCCceeE
Confidence 46688899999999999995311 111 112 1112477899999999999999863
No 249
>PRK02227 hypothetical protein; Provisional
Probab=44.89 E-value=29 Score=31.87 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=35.8
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+-++.+++.||..+-| .+....|-...|+. +.++|++||++||++|+..-|
T Consensus 135 ~l~~~a~~aGf~g~Ml----DTa~Kdg~~Lfd~l--------~~~~L~~Fv~~ar~~Gl~~gL 185 (238)
T PRK02227 135 SLPAIAADAGFDGAML----DTAIKDGKSLFDHM--------DEEELAEFVAEARSHGLMSAL 185 (238)
T ss_pred HHHHHHHHcCCCEEEE----ecccCCCcchHhhC--------CHHHHHHHHHHHHHcccHhHh
Confidence 4456788999999887 23233343344333 367999999999999998654
No 250
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=44.82 E-value=59 Score=32.33 Aligned_cols=30 Identities=17% Similarity=0.040 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+.+.++++++-|+++|+-||+|-|..+.+.
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 478999999999999999999999776643
No 251
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=44.70 E-value=38 Score=29.25 Aligned_cols=63 Identities=14% Similarity=0.008 Sum_probs=36.2
Q ss_pred hhhhHHHHcCCCEEEeC--CCCCCC--CCCCCCcccccCCC--CCCCCCHHHHHHHHHHHHHc----CCEEEE
Q 014447 47 NSIPDLSNAGITHVWLP--PPSQSV--APQGYMPGRLYDLD--ASKYGSQADLKSLIQAFRQK----GIKCLA 109 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~--Pi~~~~--~~~gY~~~d~~~id--~~~~Gt~edl~~Lv~~aH~~----Gi~Vil 109 (424)
+.+..|++.||++|.-. |-.+.. ...|....++-..| +|.....+++-++++++.+. |-+|++
T Consensus 31 ~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~~~~~~~~~~g~~V~V 103 (166)
T PTZ00242 31 LYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLDQEFAKQSTPPETIAV 103 (166)
T ss_pred HHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCeEEE
Confidence 56899999999999954 211100 13465555554444 22222345677777776654 555443
No 252
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=44.47 E-value=49 Score=25.47 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=16.2
Q ss_pred EecCCCEEEEEE---CCEEEEEECC
Q 014447 376 LASDADVYIAAI---GDRVIMKIGP 397 (424)
Q Consensus 376 ~~~~~~v~~~~r---~~~~lv~ln~ 397 (424)
+..++..+||+| +.+++++++|
T Consensus 2 iy~d~~~~a~rKG~~g~qvi~vltN 26 (91)
T PF09260_consen 2 IYSDDSTIAFRKGPDGSQVIVVLTN 26 (91)
T ss_dssp EEEETTEEEEEESSTTT-EEEEEE-
T ss_pred eEECCcEEEEEeCCCCCEEEEEEeC
Confidence 456788999999 3578888887
No 253
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=44.44 E-value=55 Score=29.62 Aligned_cols=46 Identities=15% Similarity=0.272 Sum_probs=31.7
Q ss_pred HhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 46 KNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 46 ~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
-+-|.+.+++||++|.|+- |. -.+ +.++.++||+.+-+.|..|.-.
T Consensus 93 deyl~e~~~lGfe~iEIS~--------G~-----i~m------~~eek~~lIe~a~d~Gf~vlsE 138 (258)
T COG1809 93 DEYLNEAKELGFEAIEISN--------GT-----IPM------STEEKCRLIERAVDEGFMVLSE 138 (258)
T ss_pred HHHHHHHHHcCccEEEecC--------Ce-----eec------chHHHHHHHHHHHhcccEEehh
Confidence 3446666777777777652 21 122 3788999999999999987643
No 254
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=44.40 E-value=1e+02 Score=28.45 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++.+.+ .|+|.+++ |.+..+.++-+.++++..
T Consensus 146 ~~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~li~~l 184 (265)
T cd03174 146 EYVLEVAKALEE-AGADEISLKDTVGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHHH-cCCCEEEechhcCCcCHHHHHHHHHHH
Confidence 467788888887 99999998 777777777666664443
No 255
>PLN02651 cysteine desulfurase
Probab=44.16 E-value=56 Score=31.89 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=44.8
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCC--C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSV--A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~--~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
...-+..++..|+..+.+. +-+.. . .......-...++ ..-|...+++++.+.||++|+.+++|.+-
T Consensus 101 ~~~~~~~~~~~g~~v~~v~-~~~~~~~d~~~l~~~i~~~t~lv~v~~~~-n~tG~~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 101 VLDSCRHLQQEGFEVTYLP-VKSDGLVDLDELAAAIRPDTALVSVMAVN-NEIGVIQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred HHHHHHHHHhcCCEEEEEc-cCCCCcCCHHHHHHhcCCCcEEEEEECCC-CCceecccHHHHHHHHHHcCCEEEEEcch
Confidence 3333445667788877763 22110 0 1123334445566 77899999999999999999999999774
No 256
>TIGR03586 PseI pseudaminic acid synthase.
Probab=44.08 E-value=70 Score=31.04 Aligned_cols=114 Identities=11% Similarity=0.098 Sum_probs=71.7
Q ss_pred CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC----CCCC--------CCCCccccc-CCCCCCCCCHHHHHHHHHHHHHcC
Q 014447 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ----SVAP--------QGYMPGRLY-DLDASKYGSQADLKSLIQAFRQKG 104 (424)
Q Consensus 38 ~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~----~~~~--------~gY~~~d~~-~id~~~~Gt~edl~~Lv~~aH~~G 104 (424)
+.|+++-..+-++..++.|.++|=+--... .+.. ..|.....+ ... ..-=+.|++++|.+.|++.|
T Consensus 12 H~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~el~~e~~~~L~~~~~~~G 90 (327)
T TIGR03586 12 HNGSLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQ-EAHTPWEWHKELFERAKELG 90 (327)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHH-HhhCCHHHHHHHHHHHHHhC
Confidence 468999999999999999999876542211 0000 011110101 011 11113688999999999999
Q ss_pred CEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 014447 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELS 184 (424)
Q Consensus 105 i~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~ 184 (424)
|.++-..- . .
T Consensus 91 i~~~stpf------------------d----------------------------------------------------~ 100 (327)
T TIGR03586 91 LTIFSSPF------------------D----------------------------------------------------E 100 (327)
T ss_pred CcEEEccC------------------C----------------------------------------------------H
Confidence 99875321 0 0
Q ss_pred HHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCe
Q 014447 185 DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDF 223 (424)
Q Consensus 185 ~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~ 223 (424)
+.+.+.. ++||+.|-+-+......++++.+.+..+|++
T Consensus 101 ~svd~l~-~~~v~~~KI~S~~~~n~~LL~~va~~gkPvi 138 (327)
T TIGR03586 101 TAVDFLE-SLDVPAYKIASFEITDLPLIRYVAKTGKPII 138 (327)
T ss_pred HHHHHHH-HcCCCEEEECCccccCHHHHHHHHhcCCcEE
Confidence 1123333 4899998888877777888888888778854
No 257
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=43.73 E-value=1.6e+02 Score=28.72 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.|++|++++|++|-++++ -++|.|..
T Consensus 76 i~~lr~la~~vh~~ga~~~~--QL~H~G~~ 103 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFL--QLWHVGRV 103 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEE--EcccCccC
Confidence 57899999999999999998 45788754
No 258
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=43.65 E-value=48 Score=29.91 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~ 106 (424)
-.+...+..||++|...|=..|+-- +-..|||+.+.++|-++|+.
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~G-------------------l~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGG-------------------LKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCC-------------------cccHHHHHHHHHHHHHcCCc
Confidence 4456678899999999998887541 11456777777777777765
No 259
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=43.58 E-value=1e+02 Score=30.04 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
-|+-+...+.++.+++.|++|.+-+|++
T Consensus 128 ~g~f~~v~~~i~~l~~~g~~v~v~~vv~ 155 (358)
T TIGR02109 128 KNAFEQKLAMARAVKAAGLPLTLNFVIH 155 (358)
T ss_pred ccHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 3455666667778889999987777664
No 260
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=43.31 E-value=63 Score=29.63 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHcCCEEE
Q 014447 89 SQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~Vi 108 (424)
+.++++++.+.+++.|++++
T Consensus 226 ~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 226 SKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CHHHHHHHHHHHHHcCCccc
Confidence 58999999999999998874
No 261
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=43.24 E-value=66 Score=31.96 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=39.6
Q ss_pred CCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 33 ESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 33 ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
|..++..-..-...+.+..++++|+++|.+.... ..|.+.. . . ...+..+++-+++++.||+|.+
T Consensus 22 ~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~d-------l~P~~~~--~-~--e~~~~~~~lk~~L~~~GL~v~~ 86 (382)
T TIGR02631 22 DPFGDATRTALDPVEAVHKLAELGAYGVTFHDDD-------LIPFGAP--P-Q--ERDQIVRRFKKALDETGLKVPM 86 (382)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccc-------cCCCCCC--h-h--HHHHHHHHHHHHHHHhCCeEEE
Confidence 4444332233467788999999999999974210 0011100 0 0 0134477888889999999876
No 262
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=43.12 E-value=80 Score=28.27 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
.+..+.+-+..++++|++.+.+..+-+. ..|| .+-+++|+++|+ |+.+.+--.++++
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~L~~d-----------g~iD------~~~~~~Li~~a~--~~~~tFHRAfD~~ 126 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGALTED-----------GEID------EEALEELIEAAG--GMPVTFHRAFDEV 126 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--BETT-----------SSB-------HHHHHHHHHHHT--TSEEEE-GGGGGS
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEeECCC-----------CCcC------HHHHHHHHHhcC--CCeEEEeCcHHHh
Confidence 4778888999999999999998876543 2488 889999999986 9988876666555
No 263
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=43.06 E-value=54 Score=33.67 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=43.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.-..|-++.+|+||+++--++=-+.-.-+.|.. -.++ --..+=.++||++|.++||+.|+.|.
T Consensus 67 ~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~----~~~N---~~gl~~Y~~lid~l~~~GI~P~vTL~ 131 (477)
T PRK15014 67 FYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDE----AQPN---EEGLKFYDDMFDELLKYNIEPVITLS 131 (477)
T ss_pred cccccHHHHHHHHHcCCCEEEecccceeeccCCCC----CCCC---HHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 46667888999999999998876322211111110 0112 11355689999999999999999874
No 264
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=42.97 E-value=30 Score=32.13 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 014447 90 QADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+++++|++.||+.||.+++.+
T Consensus 142 ~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 142 DEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHHcCCeeEEEE
Confidence 6789999999999999999986
No 265
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=42.92 E-value=24 Score=34.68 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
|.+-|+++.+-||++||-||.|-|+.|+.-.+
T Consensus 217 s~~HL~kiae~A~klgi~vIaDEVY~~~vfg~ 248 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIADEVYGHTVFGD 248 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEehhhcceeecCC
Confidence 47889999999999999999999999996443
No 266
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=42.70 E-value=65 Score=29.61 Aligned_cols=21 Identities=19% Similarity=0.109 Sum_probs=17.0
Q ss_pred HHHhhhhHHHHcCCCEEEeCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPP 64 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~P 64 (424)
.+.+.++-++++|+++|.|..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecC
Confidence 466778888999999999964
No 267
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=42.57 E-value=1.6e+02 Score=28.59 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.||+|++++|++|-++++=+ +|.+..
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql--~h~G~~ 108 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL--NHPGRQ 108 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--cCCCcC
Confidence 6789999999999999998765 687754
No 268
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=42.56 E-value=56 Score=30.60 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.3
Q ss_pred HHHHHHHHHc-CCEEEE
Q 014447 94 KSLIQAFRQK-GIKCLA 109 (424)
Q Consensus 94 ~~Lv~~aH~~-Gi~Vil 109 (424)
+++|++||++ ||+|..
T Consensus 219 ~~~V~~~h~~~gl~V~~ 235 (263)
T cd08580 219 PAAVDCFRRNSKVKIVL 235 (263)
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 5789999999 999976
No 269
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=42.44 E-value=56 Score=26.18 Aligned_cols=58 Identities=21% Similarity=0.054 Sum_probs=35.9
Q ss_pred hHHHHcC-CCEEEeCCCCCCC-CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 50 PDLSNAG-ITHVWLPPPSQSV-APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 50 ~ylk~lG-v~~I~l~Pi~~~~-~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.++..+| +......| .+.. ....-...|..-+= +.=|...+..+.++.|+++|.+||.
T Consensus 19 ~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~I~i-S~sG~t~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 19 YLLERLAGIPVEVEAA-SEFRYRRPLLDEDTLVIAI-SQSGETADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHhcCCceEEEeh-hHhhhcCCCCCCCcEEEEE-eCCcCCHHHHHHHHHHHHcCCeEEE
Confidence 3567776 66665542 2211 11112344444344 6677788899999999999999874
No 270
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=42.42 E-value=28 Score=25.73 Aligned_cols=66 Identities=20% Similarity=0.186 Sum_probs=38.1
Q ss_pred HHHHhhhh-HHHHc-CCCEEEeCCCCCCCCC--CCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 43 NSLKNSIP-DLSNA-GITHVWLPPPSQSVAP--QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 43 ~gi~~~L~-ylk~l-Gv~~I~l~Pi~~~~~~--~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
..+.+.+. .+..+ |++...+.+....... ......|..-+= +.-|..++..+++++|+++|.++|.
T Consensus 10 ~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i-S~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 10 GAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIAL-SYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 33444444 34666 8888766542211000 112233333333 4556678899999999999999874
No 271
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.34 E-value=3.4e+02 Score=26.52 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=41.6
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
..++.....++=|+.-|..-...-++...++. .. ..+. .. .-.+.+|+|++++|+.|-++++=+ +|.+..
T Consensus 34 ~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~-~~-~~~~-~~-~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~ 103 (353)
T cd02930 34 RLAAFYAERARGGVGLIVTGGFAPNEAGKLGP-GG-PVLN-SP-RQAAGHRLITDAVHAEGGKIALQI--LHAGRY 103 (353)
T ss_pred HHHHHHHHHhcCCceEEEEeeEEeCCcccCCC-CC-cccC-CH-HHHHHHHHHHHHHHHcCCEEEeec--cCCCCC
Confidence 34444444445577777776554444333321 11 1122 11 137789999999999999988765 588754
No 272
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.28 E-value=1.4e+02 Score=28.01 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|.+++ |.+....|.-..++++..
T Consensus 149 ~~~~~~~~~~~~-~Ga~~i~l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 149 ERVAEVAERLLD-LGCDEISLGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCccCHHHHHHHHHHH
Confidence 467788888777 99999987 677777776666664443
No 273
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=42.15 E-value=34 Score=33.39 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++..+-++.||+.||++..-+.+-|-
T Consensus 177 ~~~~~~~~i~~a~~~Gi~v~s~~i~G~~ 204 (343)
T TIGR03551 177 STAEWIEIIKTAHKLGIPTTATIMYGHV 204 (343)
T ss_pred CHHHHHHHHHHHHHcCCcccceEEEecC
Confidence 6778899999999999999888888755
No 274
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=42.07 E-value=81 Score=27.26 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHhhh-hHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 45 LKNSI-PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 45 i~~~L-~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+.+.+ ..|..+|.++..+..... ......|.--+= +.-|...+..++++.||++|++||+
T Consensus 44 ~A~~~~~~l~~~g~~~~~~~~~~~----~~~~~~Dv~I~i-S~sG~t~~~i~~~~~ak~~g~~ii~ 104 (179)
T TIGR03127 44 VGKAFAMRLMHLGFNVYVVGETTT----PSIKKGDLLIAI-SGSGETESLVTVAKKAKEIGATVAA 104 (179)
T ss_pred HHHHHHHHHHhCCCeEEEeCCccc----CCCCCCCEEEEE-eCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 33334 357889999988765431 122233333334 5668889999999999999999974
No 275
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=41.78 E-value=36 Score=33.75 Aligned_cols=63 Identities=17% Similarity=0.113 Sum_probs=40.9
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++..|++..++-|-.. ..-..+-...=...+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 109 ~~~~~gi~v~~~d~~~~e~l~~~i~~~tklV~lesp~-Np~g~~~dl~~I~~la~~~g~~livD~t~a 175 (377)
T TIGR01324 109 VLKRMGVDITYYDPLIGEDIATLIQPNTKVLFLEAPS-SITFEIQDIPAIAKAARNPGIVIMIDNTWA 175 (377)
T ss_pred HHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 34667887766644211 0001112222233455 667889999999999999999999998864
No 276
>PF09081 DUF1921: Domain of unknown function (DUF1921); InterPro: IPR015165 This domain, which is found in a set of prokaryotic amylases, has no known function []. ; PDB: 1QI5_A 1JDC_A 2AMG_A 1QPK_A 1JDD_A 1QI4_A 1JDA_A 1GCY_A 1QI3_A.
Probab=41.72 E-value=1e+02 Score=20.40 Aligned_cols=35 Identities=9% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCEEEEEECCCCC-CCCcCCCCcEEEEeC--CcEEEEe
Q 014447 388 GDRVIMKIGPKMD-IGNLIPSDFKVAADG--TDYAVWE 422 (424)
Q Consensus 388 ~~~~lv~ln~~~~-~~~~~~~~~~~~~~~--~~~~~~~ 422 (424)
+++++++|+.+.. .++...+.|..+++. +...||+
T Consensus 14 ~q~lv~AldSnlssP~qVasGsfs~a~N~dnG~vRiWr 51 (51)
T PF09081_consen 14 NQKLVFALDSNLSSPNQVASGSFSQAVNEDNGQVRIWR 51 (51)
T ss_dssp S-EEEEEES-----GGGT-SS--EEEEEETTTTEEEEE
T ss_pred ccEEEEEecCCCCCcccccccchHhhhhccCCcEEeeC
Confidence 6789999987543 456667799999988 8899995
No 277
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=41.08 E-value=29 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.++-+..|++.+-+...++||+|++|
T Consensus 16 ~ri~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 16 QRIMSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred cEeeeHHHHHHHHHHHHhCCcEEEEC
Confidence 56778899999999999999999998
No 278
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=40.89 E-value=30 Score=33.90 Aligned_cols=70 Identities=16% Similarity=0.249 Sum_probs=48.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCC---------------C---CCCCCCccccc-----------------CCCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQS---------------V---APQGYMPGRLY-----------------DLDA 84 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~---------------~---~~~gY~~~d~~-----------------~id~ 84 (424)
|=..||-.-+..|-+-|=..|..+|+... | .+++| -.||. .++
T Consensus 91 ~VVpgi~~~I~~~T~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y-~iD~~~LE~~~~~~~vkl~iLCnPH- 168 (388)
T COG1168 91 GVVPGISLAIRALTKPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRY-EIDFDALEKAFVDERVKLFILCNPH- 168 (388)
T ss_pred cchHhHHHHHHHhCcCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcE-EecHHHHHHHHhcCCccEEEEeCCC-
Confidence 55777888888888888777777777641 1 23444 11221 222
Q ss_pred CCCC---CHHHHHHHHHHHHHcCCEEEEee
Q 014447 85 SKYG---SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 85 ~~~G---t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
..-| |.|+|..+.+-|.++|++||-|-
T Consensus 169 NP~Grvwt~eeL~~i~elc~kh~v~VISDE 198 (388)
T COG1168 169 NPTGRVWTKEELRKIAELCLRHGVRVISDE 198 (388)
T ss_pred CCCCccccHHHHHHHHHHHHHcCCEEEeec
Confidence 3355 48999999999999999999774
No 279
>PLN02591 tryptophan synthase
Probab=40.83 E-value=81 Score=29.30 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=32.9
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
|+.+-+..+|+.|+++|.+.. +- .|+...++++|+++||..|+=+.++
T Consensus 94 G~~~F~~~~~~aGv~GviipD-----------------LP------~ee~~~~~~~~~~~gl~~I~lv~Pt 141 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPD-----------------LP------LEETEALRAEAAKNGIELVLLTTPT 141 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCC-----------------CC------HHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 455555666666666665541 11 4789999999999999999844454
No 280
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.76 E-value=92 Score=31.68 Aligned_cols=63 Identities=5% Similarity=0.059 Sum_probs=39.3
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcC-CEEEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG-IKCLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~G-i~VilD~v~NH~~~ 118 (424)
++|..+++.||+.|.|. |+.. +..-...+. +.-+.++..+-++.+++.| +.|.+|+++..-+.
T Consensus 164 e~l~~l~~aGvnRiSiG-VQSf------~d~vLk~lg--R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgq 227 (449)
T PRK09058 164 EKADAALDAGANRFSIG-VQSF------NTQVRRRAG--RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQ 227 (449)
T ss_pred HHHHHHHHcCCCEEEec-CCcC------CHHHHHHhC--CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCC
Confidence 45556666666666543 1111 111112222 3346889999999999999 89999999975543
No 281
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=40.69 E-value=1e+02 Score=29.43 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=37.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
++.-+.+-..-++++|||+|-|.=|.-.+ ..+- +. -++.+++|.+..+.-||||.|-+-+
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVNa~~----------~~Lt-~~--~l~~v~~lAdvfRpYGIkv~LSvnF 114 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVNANP----------KLLT-PE--YLDKVARLADVFRPYGIKVYLSVNF 114 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS--C----------GGGS-TT--THHHHHHHHHHHHHTT-EEEEEE-T
T ss_pred chhHHHHHHHHHhhcCCceEEecccccCh----------hhcC-HH--HHHHHHHHHHHHhhcCCEEEEEeec
Confidence 45556666667889999999998776553 1122 22 3789999999999999999987755
No 282
>PRK12928 lipoyl synthase; Provisional
Probab=40.39 E-value=72 Score=30.35 Aligned_cols=64 Identities=13% Similarity=0.177 Sum_probs=47.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
|..++.+.|+.|+++|++.|-+.+...- +... ..|. +|=++++|+.+-+.|.+.|.+-+.--.+
T Consensus 217 T~ed~~etl~~Lrel~~d~v~i~~Yl~p-~~~~------~~v~--~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 217 TEDEVIETLRDLRAVGCDRLTIGQYLRP-SLAH------LPVQ--RYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCCC-CccC------Ccee--eccCHHHHHHHHHHHHHcCCceeEecCc
Confidence 6788999999999999999988775421 2122 2233 6667889999999999999876654444
No 283
>PRK04302 triosephosphate isomerase; Provisional
Probab=40.38 E-value=71 Score=28.94 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=30.7
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
++.++++|+++|.+. -. .+.-..++.++++++|++.||.+|++
T Consensus 78 ~~~l~~~G~~~vii~-~s------------------er~~~~~e~~~~v~~a~~~Gl~~I~~ 120 (223)
T PRK04302 78 PEAVKDAGAVGTLIN-HS------------------ERRLTLADIEAVVERAKKLGLESVVC 120 (223)
T ss_pred HHHHHHcCCCEEEEe-cc------------------ccccCHHHHHHHHHHHHHCCCeEEEE
Confidence 677788888888553 00 11123456899999999999999974
No 284
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=40.30 E-value=51 Score=28.54 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=37.5
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
..--|+.||..+..++ .|+..++ ...-..+.+.++++.+++.|++|++|...-
T Consensus 42 ~a~~l~~LG~~~~~~~-------------~~~v~i~-~~~~~~~~~~~~~~~~~~~~~~v~~D~~~~ 94 (196)
T cd00287 42 VAVALARLGVSVTLVG-------------ADAVVIS-GLSPAPEAVLDALEEARRRGVPVVLDPGPR 94 (196)
T ss_pred HHHHHHHCCCcEEEEE-------------ccEEEEe-cccCcHHHHHHHHHHHHHcCCeEEEeCCcc
Confidence 3445677899888777 3344444 222114789999999999999999999754
No 285
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=40.18 E-value=31 Score=33.08 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 478999999999999999999964
No 286
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=40.15 E-value=72 Score=31.72 Aligned_cols=59 Identities=19% Similarity=0.063 Sum_probs=39.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|+..+.+.|. -.+.+|.+-|++.. .|. ..+ +.+.|+++.+.|+++|+-+|+|-|...++
T Consensus 168 d~~~l~~~l~----~~~aavi~Epi~~~---~G~-----~~~------~~~~l~~l~~lc~~~g~llI~DEv~tG~G 226 (397)
T TIGR03246 168 DLAAAKALIS----DKTCAVIVEPIQGE---GGV-----VPA------DPAFLKGLRELCDRHNALLIFDEVQTGVG 226 (397)
T ss_pred CHHHHHHHhc----cCeEEEEEecccCC---CCC-----cCC------CHHHHHHHHHHHHHcCCEEEEechhhcCC
Confidence 4555554442 14677888876532 121 111 37789999999999999999999985554
No 287
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=40.07 E-value=73 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.223 Sum_probs=44.4
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCC-C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
....-+..++..|+..+.+..-.... . ...-...-...+. ..-|...+++++++.||++|+.|++|-+
T Consensus 100 s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~-n~tG~~~~~~~I~~l~~~~~~~~ivD~a 176 (353)
T TIGR03235 100 AVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVN-NETGSIQPIREIAEVLEAHEAFFHVDAA 176 (353)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEccc-CCceeccCHHHHHHHHHHcCCEEEEEch
Confidence 33344455677798888775321110 0 1111222234555 6788888999999999999999999987
No 288
>PLN02849 beta-glucosidase
Probab=39.81 E-value=74 Score=32.92 Aligned_cols=64 Identities=16% Similarity=0.237 Sum_probs=43.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+.-..|-++-+|+||+++--++=-+.-.-+.|-. .+| --..+=.++||++|+++||+-|+-+-
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-----~vN---~~gl~fY~~lid~l~~~GI~P~VTL~ 140 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-----SVN---PKGLQFYKNFIQELVKHGIEPHVTLF 140 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-----CCC---HHHHHHHHHHHHHHHHcCCeEEEeec
Confidence 47778888999999999998876322111111211 133 11245689999999999999998653
No 289
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=39.66 E-value=54 Score=32.47 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=42.8
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
++|..|+++||+.|.|.- + + .+..-...++ +--+.++..+.++.+++.++.|-+|+.+.--+
T Consensus 105 e~L~~l~~~GvnrislGv-Q-S-----~~d~vL~~l~--R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPg 166 (380)
T PRK09057 105 GRFRGYRAAGVNRVSLGV-Q-A-----LNDADLRFLG--RLHSVAEALAAIDLAREIFPRVSFDLIYARPG 166 (380)
T ss_pred HHHHHHHHcCCCEEEEec-c-c-----CCHHHHHHcC--CCCCHHHHHHHHHHHHHhCccEEEEeecCCCC
Confidence 777788888888887752 1 1 0111123333 34478889999999999999999999987544
No 290
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=39.64 E-value=48 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.160 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 86 KYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
.-++.++..+.+++++++|+.|.+.+++...
T Consensus 120 ~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~ 150 (204)
T cd01335 120 SGESFKERLEALKELREAGLGLSTTLLVGLG 150 (204)
T ss_pred CCcCHHHHHHHHHHHHHcCCCceEEEEEecC
Confidence 4567889999999999999999999999644
No 291
>PRK14017 galactonate dehydratase; Provisional
Probab=39.50 E-value=1e+02 Score=30.54 Aligned_cols=68 Identities=9% Similarity=-0.071 Sum_probs=49.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------------------CCC---------CCCcccccCCCCCCCCCHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQ---------GYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------------------~~~---------gY~~~d~~~id~~~~Gt~ed 92 (424)
+....++.+..|+++|+..|+ -|+.... +-+ .....|.-.+|+.+.|+..+
T Consensus 189 ~~~~A~~~~~~l~~~~~~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~ 267 (382)
T PRK14017 189 HKPMAKVLAKELEPYRPMFIE-EPVLPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITE 267 (382)
T ss_pred CHHHHHHHHHhhcccCCCeEE-CCCCcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHH
Confidence 366777778888889999888 4553210 001 12346667777667899999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 014447 93 LKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~Vil 109 (424)
.+++.+.|+++||+++.
T Consensus 268 ~~~ia~~A~~~gi~~~~ 284 (382)
T PRK14017 268 CRKIAAMAEAYDVALAP 284 (382)
T ss_pred HHHHHHHHHHcCCeEee
Confidence 99999999999999886
No 292
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=39.43 E-value=55 Score=31.74 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=48.0
Q ss_pred CCCCCcHHHHHhhhhHHHHcCC--CEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 36 NKAGGWYNSLKNSIPDLSNAGI--THVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 36 ~~~~G~~~gi~~~L~ylk~lGv--~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.+-|+..+.+.++..+.-+. ..|++..++ +..|. .+ +.++++++++.|.++|+-||+|-+.
T Consensus 126 ~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~---nPtG~------~~------~~~~l~~l~~~~~~~~~~ii~De~y 190 (363)
T PF00155_consen 126 NDFHLDPEALEEALDELPSKGPRPKAVLICNPN---NPTGS------VL------SLEELRELAELAREYNIIIIVDEAY 190 (363)
T ss_dssp TTTEETHHHHHHHHHTSHTTTETEEEEEEESSB---TTTTB------B--------HHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccccccccccccccccccccccccceeeecccc---ccccc------cc------ccccccchhhhhcccccceeeeece
Confidence 3345678888888888776654 666665432 12221 11 4889999999999999999999998
Q ss_pred ccCCCC
Q 014447 114 NHRTAE 119 (424)
Q Consensus 114 NH~~~~ 119 (424)
.-...+
T Consensus 191 ~~~~~~ 196 (363)
T PF00155_consen 191 SDLIFG 196 (363)
T ss_dssp TTGBSS
T ss_pred eccccC
Confidence 766443
No 293
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=39.41 E-value=1.1e+02 Score=30.14 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
...+++....||+.|+..+.=.+ ++ |.. .|.+|..+. .+.++.|-+.|++.||.++.++
T Consensus 131 ~~~~~~~A~~lk~~g~~~~r~~~-~k-pRt---sp~~f~g~~------~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 131 YEQVEAVAKALKAKGLKLLRGGA-FK-PRT---SPYDFQGLG------VEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHHHHcCCcEEEccc-cC-CCC---CCccccCCC------HHHHHHHHHHHHHcCCCEEEee
Confidence 55566667788999997776322 22 111 112233333 6899999999999999999864
No 294
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=39.41 E-value=29 Score=32.54 Aligned_cols=34 Identities=29% Similarity=0.489 Sum_probs=30.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 79 LYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 79 ~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.+| ..||.+.|-+.+.+-||+.|+-++|.-..
T Consensus 162 lTh~D-g~YGNl~Dakkva~ic~e~gvPlllN~AY 195 (382)
T COG1103 162 LTHVD-GEYGNLADAKKVAKICREYGVPLLLNCAY 195 (382)
T ss_pred EeccC-CCcCCchhhHHHHHHHHHcCCceEeecce
Confidence 47789 99999999999999999999999987443
No 295
>PRK07050 cystathionine beta-lyase; Provisional
Probab=39.03 E-value=38 Score=33.72 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.++.+|++.+.+.+-.. ..-...-...-...+. ...|..++++++++.||++|+.||+|-....
T Consensus 124 ~~~~~Gi~v~~vd~~~~~~l~~~i~~~tklV~le~p~-Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 124 LARDFGITVRFYDPLIGAGIADLIQPNTRLIWLEAPG-SVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HHHhcCeEEEEECCCCHHHHHHhcCCCCeEEEEECCC-CCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 34667887776643210 0000111112122344 4568899999999999999999999998654
No 296
>PRK10060 RNase II stability modulator; Provisional
Probab=38.96 E-value=63 Score=34.69 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=48.0
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCC--------cccccCCCCCCC--------CCHHHHHHHHHHHHHc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYM--------PGRLYDLDASKY--------GSQADLKSLIQAFRQK 103 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~--------~~d~~~id~~~~--------Gt~edl~~Lv~~aH~~ 103 (424)
.+...+.+.+..|+++||.... - .-+.||. +.|+-+|| ..| ....-++.+++-||+.
T Consensus 538 ~~~~~~~~~l~~L~~~G~~ial-D-----dfGtg~ssl~~L~~l~~d~iKiD-~sfv~~i~~~~~~~~~v~~ii~~a~~l 610 (663)
T PRK10060 538 ENEELALSVIQQFSQLGAQVHL-D-----DFGTGYSSLSQLARFPIDAIKLD-QSFVRDIHKQPVSQSLVRAIVAVAQAL 610 (663)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E-----CCCCchhhHHHHHhCCCCEEEEC-HHHHhccccCcchHHHHHHHHHHHHHC
Confidence 4577788889999999985433 1 1122333 56666777 432 3356689999999999
Q ss_pred CCEEEEeeecc
Q 014447 104 GIKCLADMVIN 114 (424)
Q Consensus 104 Gi~VilD~v~N 114 (424)
||+||.+-|=+
T Consensus 611 g~~viAeGVEt 621 (663)
T PRK10060 611 NLQVIAEGVET 621 (663)
T ss_pred CCcEEEecCCC
Confidence 99999997765
No 297
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=38.88 E-value=1.9e+02 Score=27.02 Aligned_cols=38 Identities=13% Similarity=0.010 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|.+++ |.+..+.|.-..++++..
T Consensus 143 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 143 DFLIEVVEAAIE-AGATTINIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred HHHHHHHHHHHH-cCCCEEEECCCCCCCCHHHHHHHHHHH
Confidence 467777888877 99999997 677777777666664443
No 298
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=38.78 E-value=84 Score=29.76 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=24.3
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPS 66 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~ 66 (424)
.+.+..++.....+++|+++|.++|+.
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 468899999999999999999999865
No 299
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=38.77 E-value=1e+02 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
.+.++++.+.|+++|+-+|+|-|....+.
T Consensus 206 ~~~l~~l~~l~~~~g~lli~DEv~~g~g~ 234 (396)
T PRK04073 206 EGFLKAARELCKEENVLFIADEIQTGLGR 234 (396)
T ss_pred HHHHHHHHHHHHHcCCEEEEecchhCCCc
Confidence 56799999999999999999999876543
No 300
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=38.72 E-value=14 Score=29.19 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=27.1
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 77 ~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.|+..+|+.+.|+..+.+++++.|+++||.++.-
T Consensus 19 ~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h 52 (111)
T PF13378_consen 19 VDIVQIDPTRCGGITEALRIAALAEAHGIPVMPH 52 (111)
T ss_dssp CSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEB
T ss_pred CCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEec
Confidence 3556666567899999999999999999997753
No 301
>PLN02229 alpha-galactosidase
Probab=38.63 E-value=54 Score=33.00 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=34.1
Q ss_pred HHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 51 DLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
-|+++|+++|.|=--+... ...| ...+|+.+|- ..+|.|++.+|++|||.=+
T Consensus 93 Gl~~~Gy~yv~iDDgW~~~~rd~~G-----~l~~d~~rFP--~G~k~ladyiH~~GlKfGI 146 (427)
T PLN02229 93 GLADLGYIHVNIDDCWSNLKRDSKG-----QLVPDPKTFP--SGIKLLADYVHSKGLKLGI 146 (427)
T ss_pred HHHhCCCEEEEEcCCcCCCCcCCCC-----CEEEChhhcC--CcHHHHHHHHHHCCCceEE
Confidence 3699999999875444321 1222 2334423453 2599999999999999765
No 302
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=38.54 E-value=43 Score=32.54 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
|.-.|.++..+.++.||+.||+|...+.+.|
T Consensus 175 ~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl 205 (340)
T TIGR03699 175 PKKISSEEWLEVMETAHKLGLPTTATMMFGH 205 (340)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEeeC
Confidence 4456888999999999999999999999987
No 303
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=38.24 E-value=24 Score=19.95 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHhhhhHHHHcCCC
Q 014447 42 YNSLKNSIPDLSNAGIT 58 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~ 58 (424)
-..+..+++||+++|++
T Consensus 15 ~~~l~~~~~~l~~~g~~ 31 (31)
T smart00733 15 EKKLKPKVEFLKELGFS 31 (31)
T ss_pred HHHhhHHHHHHHHcCCC
Confidence 46788899999999984
No 304
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.23 E-value=76 Score=32.75 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=38.8
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.|+.+++.|++.|.+.- |+. +..-+..++ .. .|.++..+.++.++++||.+.+++++.--+
T Consensus 289 ll~~l~~aG~~~v~iGi--ES~-----~~~~L~~~~-K~-~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~ 349 (497)
T TIGR02026 289 ILHLYRRAGLVHISLGT--EAA-----AQATLDHFR-KG-TTTSTNKEAIRLLRQHNILSEAQFITGFEN 349 (497)
T ss_pred HHHHHHHhCCcEEEEcc--ccC-----CHHHHHHhc-CC-CCHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 34555556666555531 111 111133444 33 378899999999999999999999996543
No 305
>PRK08114 cystathionine beta-lyase; Provisional
Probab=38.15 E-value=36 Score=33.95 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=43.4
Q ss_pred hHHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcC--CEEEEeeec
Q 014447 50 PDLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKG--IKCLADMVI 113 (424)
Q Consensus 50 ~ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~G--i~VilD~v~ 113 (424)
..++..|++..++.|.-. ..-...-...-...+- ...|...|++++++.||++| +.||+|-+.
T Consensus 120 ~~l~~~Gi~v~~vd~~d~~~l~~~l~~~TrlV~~Etps-Np~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~ 188 (395)
T PRK08114 120 KILSKLGVTTTWFDPLIGADIAKLIQPNTKVVFLESPG-SITMEVHDVPAIVAAVRSVNPDAVIMIDNTW 188 (395)
T ss_pred HHHHhcCcEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCEeecHHHHHHHHHHhCCCCEEEEECCC
Confidence 467889999999876311 0001112333344455 66788899999999999985 999999765
No 306
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=38.05 E-value=1.1e+02 Score=31.63 Aligned_cols=77 Identities=12% Similarity=0.066 Sum_probs=49.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCC-CCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPS-QSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~-~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|-+.|++.++-.|+.||-...|===+ .+..+.-=+..|++.-. .+|++ .+..||++.|++|+.-=+=+-+--++.+
T Consensus 307 t~e~ile~vk~akk~gvE~FvlDDGwfg~rndd~~slGDWlv~s-eKfPs--giE~li~~I~e~Gl~fGIWlePemvs~d 383 (687)
T COG3345 307 TEEEILENVKEAKKFGVELFVLDDGWFGGRNDDLKSLGDWLVNS-EKFPS--GIEELIEAIAENGLIFGIWLEPEMVSED 383 (687)
T ss_pred CHHHHHHHHHHHhhcCeEEEEEccccccccCcchhhhhceecch-hhccc--cHHHHHHHHHHcCCccceeecchhcccc
Confidence 45789999999999998777664222 12222333455666555 66664 3567888999999987666655544444
Q ss_pred C
Q 014447 120 R 120 (424)
Q Consensus 120 ~ 120 (424)
+
T Consensus 384 S 384 (687)
T COG3345 384 S 384 (687)
T ss_pred h
Confidence 3
No 307
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=37.87 E-value=86 Score=29.52 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=36.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHH-HHHcCCEEEE
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA-FRQKGIKCLA 109 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~-aH~~Gi~Vil 109 (424)
.+....++...+.+++|+++|.++|+. |+... .+++.+..++ |.+.++.|++
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~------------~~~~~------~~~l~~~~~~ia~~~~~pi~l 131 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPY------------YNKPS------QEGLYAHFKAIAEATDLPVIL 131 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccc------------cCCCC------HHHHHHHHHHHHhcCCCCEEE
Confidence 368899999999999999999999865 22222 4455444444 4446787774
No 308
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=37.77 E-value=92 Score=29.08 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.|+.+.++++|.++||..|+=+.++
T Consensus 128 ~ee~~~~~~~~~~~gl~~I~lvap~ 152 (258)
T PRK13111 128 PEEAEELRAAAKKHGLDLIFLVAPT 152 (258)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4799999999999999999545554
No 309
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=37.76 E-value=45 Score=32.79 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
...|+..+++++++.||++|+.||+|-+.
T Consensus 147 NP~~~~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 147 NPLMQETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 44788999999999999999999999876
No 310
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.67 E-value=1.4e+02 Score=29.26 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=37.4
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
-..+.+-.+.|+++++ .|-|.|.++.+. . .|..++ .++++++.+.++++|+.|.
T Consensus 270 ~e~a~~La~~l~~l~~-~VnLIPynp~~~-~-----~~~~ps------~e~i~~f~~~L~~~Gi~vt 323 (345)
T PRK14457 270 PEHAEELANLLRGFQS-HVNLIPYNPIDE-V-----EFQRPS------PKRIQAFQRVLEQRGVAVS 323 (345)
T ss_pred HHHHHHHHHHHhcCCC-eEEEecCCCCCC-C-----CCCCCC------HHHHHHHHHHHHHCCCeEE
Confidence 3444444566777776 789998876532 2 233333 7889999999999999985
No 311
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=37.63 E-value=90 Score=30.17 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=38.3
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE-EEEeeec
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK-CLADMVI 113 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~ 113 (424)
+.++.|++.|++.|.++- ++..+.-|..+. ..-|+.++..+-+++|.+.|+. |-+-+|+
T Consensus 103 ~~~~~L~~~gl~~v~ISl-------d~~~~~~~~~i~-~~~~~~~~vl~~i~~l~~~G~~~v~in~vv 162 (334)
T TIGR02666 103 RHAKDLKEAGLKRVNVSL-------DSLDPERFAKIT-RRGGRLEQVLAGIDAALAAGLEPVKLNTVV 162 (334)
T ss_pred HHHHHHHHcCCCeEEEec-------ccCCHHHhheeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 455666666666666542 222222234444 4456889999999999999997 8777765
No 312
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=37.39 E-value=2.6e+02 Score=26.89 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-|+-+...+-|+.++++|++|.+..++
T Consensus 145 ~g~f~~~l~~I~~l~~~G~~v~v~~tv 171 (318)
T TIGR03470 145 EGVFDRAVEAIREAKARGFRVTTNTTL 171 (318)
T ss_pred CCcHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 367778888888899999998877665
No 313
>PLN02509 cystathionine beta-lyase
Probab=37.18 E-value=44 Score=34.15 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+. ...|...|++++++.||++|+.||+|-..
T Consensus 225 sPs-NPtG~i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 225 SPT-NPRQQISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred CCC-CCCCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence 455 66788999999999999999999999884
No 314
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=37.05 E-value=87 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=18.8
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCC
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGY 74 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY 74 (424)
+..+.++|+++|-++|+|++.+..++
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~ 133 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGA 133 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-
T ss_pred HHHhhhcCCCEEEECCccCCCCCccc
Confidence 66677899999999999998654443
No 315
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.03 E-value=58 Score=31.78 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=36.8
Q ss_pred hhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 48 SIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 48 ~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+.++++|.++|=++=.+ | +-+-.+++ --..+.++++.++||+.||-+++.+++
T Consensus 111 sve~a~~~GAdAVk~lv~~------~--~d~~~~~~---~~~~~~l~rv~~ec~~~giPlllE~l~ 165 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYY------R--PDEDDAIN---DRKHAFVERVGAECRANDIPFFLEPLT 165 (340)
T ss_pred cHHHHHHcCCCEEEEEEEe------C--CCcchHHH---HHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 3578999999999876311 1 11010111 113567999999999999999998654
No 316
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=37.01 E-value=1.3e+02 Score=29.56 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHhhhhHHHHcC----CCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 42 YNSLKNSIPDLSNAG----ITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 42 ~~gi~~~L~ylk~lG----v~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
...+.+-.+++++++ ...|.|.|.++.+.. ..+|..+ +.+++++|.+.+.++|+.|.+
T Consensus 263 ~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~----~~~~~~p------s~e~v~~f~~~L~~~Gi~vti 324 (347)
T PRK14453 263 KEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKT----PFKFQSS------SAGQIKQFCSTLKSAGISVTV 324 (347)
T ss_pred HHHHHHHHHHHhhccccCCcceEEEecCCCCCCC----CccCCCC------CHHHHHHHHHHHHHCCCcEEE
Confidence 344444555666653 456777776654321 1123333 388999999999999998763
No 317
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.86 E-value=96 Score=28.89 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.|+...++++|+++|++.++=+.++
T Consensus 126 ~ee~~~~~~~~~~~gl~~i~lv~P~ 150 (256)
T TIGR00262 126 LEESGDLVEAAKKHGVKPIFLVAPN 150 (256)
T ss_pred hHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4789999999999999998666654
No 318
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=36.84 E-value=63 Score=31.75 Aligned_cols=17 Identities=12% Similarity=0.259 Sum_probs=15.1
Q ss_pred HHHHHHHHHHcCCEEEE
Q 014447 93 LKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~Vil 109 (424)
...+|++||++|++|+.
T Consensus 280 ~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 280 PSEYAKAAKAAGLDIIT 296 (356)
T ss_pred CHHHHHHHHHcCCEEEE
Confidence 46899999999999975
No 319
>PRK11059 regulatory protein CsrD; Provisional
Probab=36.79 E-value=46 Score=35.52 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCC---CCCCCcccccCCCCCCC--------CC
Q 014447 21 TSPALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVA---PQGYMPGRLYDLDASKY--------GS 89 (424)
Q Consensus 21 ~~~~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---~~gY~~~d~~~id~~~~--------Gt 89 (424)
....+++++=. . .-..+...+.+.+..|+++||.... -=+-.+.. +-..-+.||-+|| +.+ ..
T Consensus 515 ~~~~l~~Ei~E-~---~~~~~~~~~~~~l~~L~~~G~~iai-ddfG~g~~s~~~L~~l~~d~iKid-~s~v~~i~~~~~~ 588 (640)
T PRK11059 515 QRKRLIFELAE-A---DVCQHISRLRPVLRMLRGLGCRLAV-DQAGLTVVSTSYIKELNVELIKLH-PSLVRNIHKRTEN 588 (640)
T ss_pred CcceEEEEEec-h---hhhcCHHHHHHHHHHHHHCCCEEEE-ECCCCCcccHHHHHhCCCCEEEEC-HHHHhhhhcCchh
Confidence 34456655443 1 1124678889999999999996543 11111111 1112245666666 432 22
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
..-++.+++.||..|++||..-|=+.
T Consensus 589 ~~~v~sli~~a~~~~i~viAegVEt~ 614 (640)
T PRK11059 589 QLFVRSLVGACAGTETQVFATGVESR 614 (640)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence 34489999999999999999988653
No 320
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=36.67 E-value=34 Score=33.87 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=28.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 80 ~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..++ ...|+..+++++++.||++|+.|++|-+.
T Consensus 165 ~~~~-~~tG~~~~l~~I~~la~~~g~~livD~a~ 197 (387)
T PRK09331 165 THVD-GNYGNLADAKKVAKVAHEYGIPFLLNGAY 197 (387)
T ss_pred ECCC-CCCcccccHHHHHHHHHHcCCEEEEECCc
Confidence 3455 67899999999999999999999999974
No 321
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=36.65 E-value=3.5e+02 Score=25.12 Aligned_cols=63 Identities=16% Similarity=0.209 Sum_probs=37.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.++..+..-++||++-|..-|.|+= ....+|....-..+| ++.+..--++-++-||+|.- |++
T Consensus 133 ~t~~e~~~A~e~i~~~Gn~~i~L~e----Rg~~~Y~~~~~n~~d---------l~ai~~lk~~~~lPVivd~S--Hs~ 195 (250)
T PRK13397 133 ATIEEYLGALSYLQDTGKSNIILCE----RGVRGYDVETRNMLD---------IMAVPIIQQKTDLPIIVDVS--HST 195 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEc----cccCCCCCccccccC---------HHHHHHHHHHhCCCeEECCC--CCC
Confidence 4788888888999998887777662 122345422111344 33333222335788888877 664
No 322
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=36.56 E-value=12 Score=37.61 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.-+|..-|++.+++.||++|+.|++|-.
T Consensus 178 TY~Gv~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 178 TYYGVCYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp -TTSEEE-HHHHHHHHCCTECEEEEE-T
T ss_pred CCCeEEECHHHHHHHhcccCCEEEEEcc
Confidence 4466677899999999999999999953
No 323
>PRK09989 hypothetical protein; Provisional
Probab=36.53 E-value=95 Score=28.66 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHhhhhHHHHcCCCEEEeCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPP 65 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi 65 (424)
.+.+.|+.++++||++|.|.-+
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~ 37 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFP 37 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCc
Confidence 4568899999999999998543
No 324
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=36.42 E-value=1.5e+02 Score=28.41 Aligned_cols=67 Identities=18% Similarity=0.182 Sum_probs=44.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHc--CCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQK--GIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~--Gi~VilD~v~NH~~ 117 (424)
.++.+.+.+..+.++|+++|-|-|+-+.....|-. +.+ + .--..+-|+++++. .|-||.|+.+...+
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~-----A~~-~----~g~v~~air~iK~~~pdl~vi~DVcLc~YT 127 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSD-----TWD-D----NGLLARMVRTIKAAVPEMMVIPDICFCEYT 127 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc-----ccC-C----CChHHHHHHHHHHHCCCeEEEeeeecccCC
Confidence 47889999999999999999999984332222211 111 1 11244555555554 89999999997553
No 325
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=36.22 E-value=91 Score=29.87 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=46.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
|-.++++.|+.|+++|++.|-+.+-+.- +...+.+. +|=++++|+.+-+.|-+.|.+-+.--.+
T Consensus 220 Teee~~etl~~Lrelg~d~v~igqYl~p-~~~~~~v~--------~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 220 TNEEIKQTLKDLRDHGVTMVTLGQYLRP-SRRHLPVK--------RYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeecccCC-CCCCCccc--------cCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 6788999999999999999988875532 23333333 4556779999999999999876554433
No 326
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=36.12 E-value=28 Score=35.51 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=41.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCC--CCC-----HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASK--YGS-----QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~--~Gt-----~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.-..+-++-+|+||+++.-++=- +..|- |. -|. .+=.++||++|.++||+.|+.+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~-------------W~Ri~-P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL-- 119 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSIS-------------WSRIF-PDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL-- 119 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE---------------HHHHS-TTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred chhhhhHHHHHHHhhccceeeeecc-------------hhhee-ecccccccCHhHhhhhHHHHHHHHhhccceeeee--
Confidence 3667888899999999999987632 22333 32 222 4568999999999999999876
Q ss_pred ccC
Q 014447 114 NHR 116 (424)
Q Consensus 114 NH~ 116 (424)
.|.
T Consensus 120 ~H~ 122 (455)
T PF00232_consen 120 YHF 122 (455)
T ss_dssp ESS
T ss_pred eec
Confidence 454
No 327
>PRK09064 5-aminolevulinate synthase; Validated
Probab=36.02 E-value=56 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
..-|+..+++++.+-|+++|+-||+|-+.-
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~ 218 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHA 218 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCc
Confidence 444666679999999999999999998864
No 328
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=35.96 E-value=29 Score=33.82 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
...|+.++++++++.||++|+.|++|-+.-
T Consensus 150 n~tG~~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 150 GNYGNLHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred CCCeeeccHHHHHHHHHHcCCeEEEECCcc
Confidence 568889999999999999999999999864
No 329
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=35.90 E-value=37 Score=32.36 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.||++|+.||+|-+....
T Consensus 150 ~~~~l~~l~~~~~~~~~~~ivD~a~~~~ 177 (350)
T cd00609 150 SEEELEELAELAKKHGILIISDEAYAEL 177 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEEEecchhhc
Confidence 3789999999999999999999987543
No 330
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=35.89 E-value=32 Score=33.12 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..-|...+++++++.||++|+.||+|-+-
T Consensus 143 ~~tG~~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 143 SMDGDIAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred cCCCCccCHHHHHHHHHHcCCEEEEEccc
Confidence 34566778999999999999999999994
No 331
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=35.87 E-value=32 Score=33.81 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
...|...+++++++.||++|+.||+|-+.
T Consensus 136 np~g~~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 136 NPTLKVVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 45677788999999999999999999874
No 332
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=35.83 E-value=1.1e+02 Score=26.64 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=42.0
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCC-------HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGS-------QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt-------~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
++.+.+.++..+.||+..|.+.|.. +... +.... .+-|+++++.|.++|++|.+.-..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~-------------~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR-------------YPSG-PEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT-------------ESSS-TTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc-------------cccc-cCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 7788888999999999999998642 0000 11111 357899999999999999998433
No 333
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=35.83 E-value=58 Score=31.22 Aligned_cols=32 Identities=22% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
|.--|.++..+.++.||+.||++..-+.+.|-
T Consensus 139 ~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~ 170 (309)
T TIGR00423 139 PNKLSSDEWLEVIKTAHRLGIPTTATMMFGHV 170 (309)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceeeEEecCC
Confidence 43336788889999999999999999999865
No 334
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=35.75 E-value=38 Score=32.62 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.|+++|+.||+|-+.-..
T Consensus 143 ~~~~~~~l~~~a~~~~~~ii~De~y~~~ 170 (330)
T TIGR01140 143 PPETLLALAARLRARGGWLVVDEAFIDF 170 (330)
T ss_pred CHHHHHHHHHHhHhcCCEEEEECccccc
Confidence 3789999999999999999999987533
No 335
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=35.65 E-value=43 Score=27.71 Aligned_cols=58 Identities=17% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH----HHHHHHHHHHcCCEEEEeee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD----LKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed----l~~Lv~~aH~~Gi~VilD~v 112 (424)
+.++.--|+-++++|++.+.++||..+. -.||.-++ .+. .+++-+.|.++|. =|+|+-
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvNg~------wydytG~~------~~~r~~~y~kI~~~~~~~gf-~v~D~s 96 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVNGK------WYDYTGLS------KEMRQEYYKKIKYQLKSQGF-NVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE----HH------HHHHTT--------HHHHHHHHHHHHHHHHTTT---EEE-T
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCcHH------HHHHhCCC------HHHHHHHHHHHHHHHHHCCC-EEEecc
Confidence 7888888999999999999999877542 22333344 333 4455566888999 556653
No 336
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=35.59 E-value=30 Score=34.51 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=29.6
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 77 ~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.-...+. ..-|...+++++.+.||++|+.|++|.+
T Consensus 175 v~~~~v~-~~tG~~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 175 ILLSGVQ-YYTGQLFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred EEEeccc-cccceecCHHHHHHHHHHcCCEEEEEcc
Confidence 3345566 7789999999999999999999999964
No 337
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=35.37 E-value=1.1e+02 Score=30.26 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=40.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|+..+.+.|. .-.+..|++.|++ ++ .|. .+. +.+.++++.+.|+++|+-+|+|-|....+
T Consensus 166 d~~~le~~l~---~~~~~~v~~ep~~-~~--~G~------~~~-----~~~~l~~l~~l~~~~~~lli~Dev~~g~g 225 (400)
T PTZ00125 166 DVEALEKLLQ---DPNVAAFIVEPIQ-GE--AGV------IVP-----DDGYLKQVYELCKKYNVLLIVDEIQTGLG 225 (400)
T ss_pred CHHHHHHHhC---CCCeEEEEEcCcc-CC--CCC------ccC-----CHHHHHHHHHHHHHcCCEEEEeccccCCC
Confidence 4555555443 2257788888864 22 231 122 35679999999999999999999986554
No 338
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=35.34 E-value=80 Score=31.37 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.|..-+++++++.||++|+.+|+|-+.-
T Consensus 151 ~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 151 TGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred CCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 4555568899999999999999999875
No 339
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.32 E-value=1.1e+02 Score=29.27 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=23.4
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPS 66 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~ 66 (424)
.....++...+.+++|+++|.++|++
T Consensus 86 ~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 86 GTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 57889999999999999999999865
No 340
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=35.28 E-value=35 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
...|...|++++++.||++|+.||+|-.+
T Consensus 147 NPtg~~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 147 NPLMVEFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred CCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 44677779999999999999999999985
No 341
>PRK05968 hypothetical protein; Provisional
Probab=35.27 E-value=50 Score=32.84 Aligned_cols=62 Identities=16% Similarity=0.084 Sum_probs=39.6
Q ss_pred HHHHcCCCEEEeCCCCCCC---CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQSV---APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~---~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|++.+++.+.-... .-......-...+. ...+...+++++.+.||++|+.||+|-..
T Consensus 122 ~~~~~G~~v~~vd~~d~~~l~~~i~~tklV~ie~pt-~~~~~~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 122 ILKRMGVEVDYVDGRDEEAVAKALPGAKLLYLESPT-SWVFELQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHcCceEEEeCCCCHHHHHHhcccCCEEEEECCC-CCCCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4677888888774321000 00011111122344 56778899999999999999999999864
No 342
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=35.13 E-value=1.5e+02 Score=28.34 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=45.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH--cCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ--KGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~--~Gi~VilD~v~NH~~ 117 (424)
.++.+.+.+..+.++|+++|-|-|+-+.....|-. +.+ +. |- .++-|+++++ -.|-||.|+.+...+
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~-----A~~-~~-g~---v~~air~iK~~~p~l~vi~DvcLc~YT 117 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSE-----AYD-PD-GI---VQRAIRAIKEAVPELVVITDVCLCEYT 117 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCccc-----ccC-CC-Ch---HHHHHHHHHHhCCCcEEEEeeeccCCC
Confidence 58899999999999999999999994332233311 122 11 22 3444444444 489999999997553
No 343
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=35.04 E-value=1e+02 Score=30.32 Aligned_cols=68 Identities=9% Similarity=-0.085 Sum_probs=50.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------------------CCC---------CCCcccccCCCCCCCCCHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQ---------GYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------------------~~~---------gY~~~d~~~id~~~~Gt~ed 92 (424)
+....+..+..|+++|+..|+ -|+.... +-. .....|...+|+.+.|+..+
T Consensus 175 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~ 253 (361)
T cd03322 175 TPNQAARFGKDVEPYRLFWME-DPTPAENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITP 253 (361)
T ss_pred CHHHHHHHHHHhhhcCCCEEE-CCCCcccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 467788888888999999888 3543210 001 14457778888556799999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 014447 93 LKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~Vil 109 (424)
.+++++.|+++|++++.
T Consensus 254 ~~~ia~~A~~~gi~~~~ 270 (361)
T cd03322 254 ARKIADLASLYGVRTGW 270 (361)
T ss_pred HHHHHHHHHHcCCeeec
Confidence 99999999999999985
No 344
>PRK15108 biotin synthase; Provisional
Probab=35.04 E-value=1.1e+02 Score=29.79 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 88 GSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
++.++..+.++.||+.||+|..=+.+.|
T Consensus 168 ~~~~~rl~~i~~a~~~G~~v~sg~i~Gl 195 (345)
T PRK15108 168 RTYQERLDTLEKVRDAGIKVCSGGIVGL 195 (345)
T ss_pred CCHHHHHHHHHHHHHcCCceeeEEEEeC
Confidence 3788999999999999999998888887
No 345
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.90 E-value=41 Score=26.96 Aligned_cols=55 Identities=20% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHH-cCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 51 DLSN-AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 51 ylk~-lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
++.. +|+..+...+.... . .-...|..-+= +.-|...+..+.++.|+++|++||.
T Consensus 20 ~l~~~~~~~~~~~~~~~~~-~--~~~~~dl~I~i-S~SG~t~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 20 LLLDEAKIPVYVVKDYTLP-A--FVDRKTLVIAV-SYSGNTEETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHhccCCCEEEecCccCc-C--CCCCCCEEEEE-ECCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4455 48888876552211 1 11233344444 6778889999999999999999973
No 346
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=34.78 E-value=19 Score=31.63 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=33.0
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
|..++++|+++|++.+.... ... .. .++++++.+.+.++||+|..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~------------~~~-~~---~~~~~~~~~~~~~~gl~i~~ 45 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQ------------PWD-EK---DDEAEELRRLLEDYGLKIAS 45 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHS------------HHT-HH---HHHHHHHHHHHHHTTCEEEE
T ss_pred ChHHHHcCCCEEEEecCCCc------------ccc-cc---hHHHHHHHHHHHHcCCeEEE
Confidence 46789999999999864321 111 11 56899999999999999653
No 347
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=34.61 E-value=71 Score=31.84 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=44.2
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
++|..|+++||+.|.|.- +.. +..-+..++ +--+.++..+.++.+++.+..|-+|+++.--+.
T Consensus 123 e~L~~l~~~GvnrisiGv-QS~------~~~~L~~l~--R~~~~~~~~~~i~~~~~~~~~v~~dlI~GlPgq 185 (394)
T PRK08898 123 EKFAQFRASGVNRLSIGI-QSF------NDAHLKALG--RIHDGAEARAAIEIAAKHFDNFNLDLMYALPGQ 185 (394)
T ss_pred HHHHHHHHcCCCeEEEec-ccC------CHHHHHHhC--CCCCHHHHHHHHHHHHHhCCceEEEEEcCCCCC
Confidence 788889999999888752 111 111122333 333678888899999999999999999986654
No 348
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=34.58 E-value=2e+02 Score=27.69 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=53.0
Q ss_pred CCceEEEeecCCCCCC----------CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHH
Q 014447 22 SPALLFQGFNWESSNK----------AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 22 ~~~v~~~~f~~ds~~~----------~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~e 91 (424)
....+|-+|--+..+. ..=.++.+.+.+..+.++|+++|-|-|+-+.....|- .+.| +. |-
T Consensus 28 ~~dlI~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs-----~A~~-~~-g~-- 98 (323)
T PRK09283 28 PNDLIYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVPELKDEDGS-----EAYN-PD-GL-- 98 (323)
T ss_pred HHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccc-----cccC-CC-CH--
Confidence 3357777784222211 0224888999999999999999999999322222231 1222 21 22
Q ss_pred HHHHHHHHHHH--cCCEEEEeeecccCC
Q 014447 92 DLKSLIQAFRQ--KGIKCLADMVINHRT 117 (424)
Q Consensus 92 dl~~Lv~~aH~--~Gi~VilD~v~NH~~ 117 (424)
+.+-|+++++ -.|-||.|+.+...+
T Consensus 99 -v~rair~iK~~~p~l~vi~DVcLc~YT 125 (323)
T PRK09283 99 -VQRAIRAIKKAFPELGVITDVCLDEYT 125 (323)
T ss_pred -HHHHHHHHHHhCCCcEEEEeeeccCCC
Confidence 3444444444 589999999997553
No 349
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=34.57 E-value=97 Score=29.81 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCcHHHHHhhhhHHHH-cCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCC
Q 014447 39 GGWYNSLKNSIPDLSN-AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI 105 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~-lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi 105 (424)
..++.+++++++|+.+ .|+++|=|..= .+|.... |+-+-+...|+.|++++.++|.
T Consensus 234 ~atldd~v~hI~h~v~~~G~dhVglGsD-----f~g~~~~------p~gled~~~l~~l~~~L~~~G~ 290 (313)
T COG2355 234 RATLDDLVRHIDHFVELVGIDHVGLGSD-----FDGGTGP------PDGLEDVGKLPNLTAALIERGY 290 (313)
T ss_pred CCCHHHHHHHHHHHHHhcCcceeEeccc-----ccCCCCC------chhhcChhHHHHHHHHHHHcCC
Confidence 4699999999999966 89999988742 2221111 2456678899999999999984
No 350
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=34.52 E-value=47 Score=31.97 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
++|+.|+.+++.+..+++++|.||+-+|.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 57889999999988888889999999993
No 351
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.38 E-value=51 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+...-|++++++-||++|+-||+|=.+
T Consensus 173 NPll~v~DI~~l~~la~~~g~~vvVDnTf 201 (409)
T KOG0053|consen 173 NPLLKVPDIEKLARLAHKYGFLVVVDNTF 201 (409)
T ss_pred CCccccccHHHHHHHHhhCCCEEEEeCCc
Confidence 45556667999999999999999999655
No 352
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=34.32 E-value=6.1e+02 Score=27.78 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHc-CCEEEEeeecccCCCCC
Q 014447 90 QADLKSLIQAFRQK-GIKCLADMVINHRTAER 120 (424)
Q Consensus 90 ~edl~~Lv~~aH~~-Gi~VilD~v~NH~~~~~ 120 (424)
.+.+|++++++|++ |-+|++=+ +|.|...
T Consensus 474 i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~ 503 (765)
T PRK08255 474 EAAWKRIVDFVHANSDAKIGIQL--GHSGRKG 503 (765)
T ss_pred HHHHHHHHHHHHhcCCceEEEEc--cCCcccc
Confidence 56899999999999 68888765 8887653
No 353
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.27 E-value=1.3e+02 Score=28.28 Aligned_cols=61 Identities=11% Similarity=0.135 Sum_probs=41.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+...+.+....||++|+..+... .++ |-+. +.+|.- +| .+.++.|-+.|++.||.++-++-
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~-~~k-pRTs---~~s~~G-----~g-~~gl~~l~~~~~~~Gl~~~te~~ 99 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGG-AFK-PRTS---PYSFQG-----LG-EEGLKILKEVGDKYNLPVVTEVM 99 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-eec-CCCC---CCccCC-----cH-HHHHHHHHHHHHHcCCCEEEeeC
Confidence 46778888889999999855543 232 1111 112221 12 88999999999999999998753
No 354
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=34.20 E-value=62 Score=32.11 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
..-|+..+++++++.||++|+-||+|-+-.
T Consensus 188 ~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 188 SMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 445666678999999999999999998853
No 355
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=34.13 E-value=95 Score=29.29 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=23.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPS 66 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~ 66 (424)
+.+..++...+.+++|+++|.++|++
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 57889999999999999999999966
No 356
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.07 E-value=1.3e+02 Score=28.36 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=39.4
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
.++...++.....+++|+++|.++|++ |+.. -+.+++.+..++..+ ++.||+=
T Consensus 75 ~~~~~ai~~a~~a~~~Gad~v~v~~P~------------y~~~-----~~~~~i~~yf~~v~~-~lpv~iY 127 (279)
T cd00953 75 LNLEESIELARAAKSFGIYAIASLPPY------------YFPG-----IPEEWLIKYFTDISS-PYPTFIY 127 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCc------------CCCC-----CCHHHHHHHHHHHHh-cCCEEEE
Confidence 468899999999999999999998865 2221 135677766666666 7777764
No 357
>PLN02624 ornithine-delta-aminotransferase
Probab=33.93 E-value=1.1e+02 Score=31.38 Aligned_cols=62 Identities=13% Similarity=0.169 Sum_probs=38.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|+..+.+.++. +.-.+.+|.+-||+-. .| ..+-..+-|+++.+.|+++|+-+|+|-|....+
T Consensus 210 d~~~l~~~l~~-~~~~iaaiiiEpv~~~---~G-----------~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~G 271 (474)
T PLN02624 210 DLDALEKIFEE-DGDRIAAFLFEPIQGE---AG-----------VVIPPDGYLKAVRELCSKHNVLMIADEIQTGLA 271 (474)
T ss_pred CHHHHHHHHHh-CCCCEEEEEECCccCC---CC-----------CcCCCHHHHHHHHHHHHHcCCEEEEeccccCcC
Confidence 45555444421 1123667888887622 22 111134459999999999999999999975443
No 358
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=33.92 E-value=52 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
++++.|+.+++.+..+++++|.||+-+|-
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiDw 133 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDIDW 133 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEECC
Confidence 56788999999998888889999999995
No 359
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.79 E-value=1e+02 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHcC-CEEEEeeecccC
Q 014447 88 GSQADLKSLIQAFRQKG-IKCLADMVINHR 116 (424)
Q Consensus 88 Gt~edl~~Lv~~aH~~G-i~VilD~v~NH~ 116 (424)
++.+++.+-++.++++| ++|.+.++++..
T Consensus 133 ~~~~~~~~~i~~~~~~g~~~v~~~~~~g~~ 162 (216)
T smart00729 133 HTVEDVLEAVEKLREAGPIKVSTDLIVGLP 162 (216)
T ss_pred CCHHHHHHHHHHHHHhCCcceEEeEEecCC
Confidence 46789999999999999 899999888755
No 360
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=33.79 E-value=50 Score=30.84 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+.+++++|++.||+.||.+|+|+-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh 168 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVH 168 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeC
Confidence 357999999999999999999973
No 361
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.76 E-value=2.6e+02 Score=25.92 Aligned_cols=38 Identities=24% Similarity=0.227 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|.+++ |.+..+.|+-..++++..
T Consensus 139 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 139 DFLIEFAEVAQE-AGADRLRFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HHHHHHHHHHHH-CCCCEEEeCCCCCCCCHHHHHHHHHHH
Confidence 467778887776 99999987 667777776666664443
No 362
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=33.67 E-value=93 Score=26.63 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=36.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
|+.-..+...-|+++||. |++. |- +..=|.+.+.++++.+.++|++||+=
T Consensus 10 D~~~~~~a~~~L~~~gi~---------------~dv~----V~-SaHRtp~~~~~~~~~a~~~g~~viIa 59 (156)
T TIGR01162 10 DLPTMKKAADILEEFGIP---------------YELR----VV-SAHRTPELMLEYAKEAEERGIKVIIA 59 (156)
T ss_pred hHHHHHHHHHHHHHcCCC---------------eEEE----EE-CcccCHHHHHHHHHHHHHCCCeEEEE
Confidence 466666667788999996 2222 33 55557889999999999999988753
No 363
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=33.57 E-value=1.5e+02 Score=25.64 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=39.6
Q ss_pred HHHhhhh-HHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 44 SLKNSIP-DLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 44 gi~~~L~-ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+.+.+- .|..+|+.++.+..... ......|.--+= +.-|...+..++++.|+++|++||.
T Consensus 46 ~~A~~~~~~l~~~g~~~~~~~~~~~----~~~~~~D~vI~i-S~sG~t~~~i~~~~~ak~~g~~iI~ 107 (179)
T cd05005 46 LVAKAFAMRLMHLGLNVYVVGETTT----PAIGPGDLLIAI-SGSGETSSVVNAAEKAKKAGAKVVL 107 (179)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCCCC----CCCCCCCEEEEE-cCCCCcHHHHHHHHHHHHCCCeEEE
Confidence 3444443 56778998888754321 112233333333 5667788999999999999999874
No 364
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=33.43 E-value=65 Score=31.59 Aligned_cols=32 Identities=19% Similarity=0.150 Sum_probs=26.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 82 id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+. ..-|+..+++++++.||++|+.+++|-+--
T Consensus 152 v~-s~~G~i~pl~eI~~l~~~~~~~livDea~~ 183 (370)
T PRK05937 152 VY-SFKGTLAPLEQIIALSKKYHAHLIVDEAHA 183 (370)
T ss_pred CC-CCCCCccCHHHHHHHHHHcCCEEEEECCcc
Confidence 44 566777779999999999999999998863
No 365
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=33.30 E-value=1.1e+02 Score=30.48 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=39.2
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|+..+.+.|+ + .+.+|.+-|++.. .|. ..+ +.+.+++|++-|+++|+-+|+|-|....+
T Consensus 172 d~~~l~~~l~---~-~~aaviiEPv~~~---gg~-----~~~------~~~~l~~l~~l~~~~~~llI~DEv~tG~g 230 (406)
T PRK12381 172 DLNSASALID---D-QTCAVIVEPIQGE---GGV-----IPA------DKAFLQGLRELCDRHNALLIFDEVQTGVG 230 (406)
T ss_pred CHHHHHHhcc---C-CeeEEEEeCCcCC---CCC-----cCC------CHHHHHHHHHHHHHcCCEEEEcchhhCCC
Confidence 4555544442 1 4677888876532 121 112 36789999999999999999999974443
No 366
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=33.30 E-value=1.4e+02 Score=27.58 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPA 169 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (424)
.+-+++.|+.||++||.|..--.+-|.+.
T Consensus 53 ~~~l~eki~l~~~~gV~v~~GGtl~E~a~--------------------------------------------------- 81 (244)
T PF02679_consen 53 EEILKEKIDLAHSHGVYVYPGGTLFEVAY--------------------------------------------------- 81 (244)
T ss_dssp CHHHHHHHHHHHCTT-EEEE-HHHHHHHH---------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCeEeCCcHHHHHHH---------------------------------------------------
Confidence 56799999999999999987666554421
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEeccc-CCCCHHHHHHHHHhcCC-Ce-EEeeec
Q 014447 170 PDIDHLNPRVQKELSDWMNWLKTEIGFDGWRFDFV-KGYAPSITKVYMENTSP-DF-AVGEKW 229 (424)
Q Consensus 170 ~dln~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a-~~~~~~~~~~~~~~~~p-~~-~v~E~~ 229 (424)
.+..+.+++++..+ +|+|.+-+..- -.++.+-+.++++..+. .| .+.|+-
T Consensus 82 ---------~q~~~~~yl~~~k~-lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 82 ---------QQGKFDEYLEECKE-LGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---------HTT-HHHHHHHHHH-CT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred ---------hcChHHHHHHHHHH-cCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 12345566666665 99999999764 46788888888887766 35 778874
No 367
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=33.30 E-value=1.8e+02 Score=27.96 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=39.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...+.+.+..+++.|++.|=+.--..... +.+ ... ...=+.+.+++++++||++|++|.+
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~-----~~~--~~~-~~~~~~e~l~~~~~~A~~~g~~v~~ 178 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLS-----PGD--PPP-DTQFSEEELRAIVDEAHKAGLYVAA 178 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCC-----CCC--CCc-ccCcCHHHHHHHHHHHHHcCCEEEE
Confidence 466778888888889999986652110000 000 011 1122488999999999999999775
No 368
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=33.21 E-value=29 Score=28.95 Aligned_cols=30 Identities=23% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 87 YGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 87 ~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
-|...+++++++.||++|+.+|+|-...-.
T Consensus 105 ~g~~~~~~~l~~~~~~~~~~li~D~a~~~~ 134 (170)
T cd01494 105 GGVLVPLKEIRKIAKEYGILLLVDAASAGG 134 (170)
T ss_pred CCeEcCHHHHHHHHHHcCCEEEEecccccc
Confidence 344456689999999999999999776533
No 369
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=33.10 E-value=78 Score=31.48 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 82 id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+. ..-|+..+++++.+.||++|+-+|+|-+-
T Consensus 186 v~-~~~G~~~~l~~i~~l~~~~~~~livDea~ 216 (406)
T PRK13393 186 VY-SMDGDIAPIAEICDVAEKHGAMTYLDEVH 216 (406)
T ss_pred CC-CCCCchhCHHHHHHHHHHcCCEEEEECCc
Confidence 44 55678888999999999999999999774
No 370
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=33.05 E-value=1.1e+02 Score=29.86 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=75.8
Q ss_pred CCCcHHHHHhhhhHHHHcCCCEEEeCCCCC----CCCC-C-CCCcc------cccCCCCCCCC-CHHHHHHHHHHHHHcC
Q 014447 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQ----SVAP-Q-GYMPG------RLYDLDASKYG-SQADLKSLIQAFRQKG 104 (424)
Q Consensus 38 ~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~----~~~~-~-gY~~~------d~~~id~~~~G-t~edl~~Lv~~aH~~G 104 (424)
+.||++-..+-++-.++.|+++|=+--... .+.. . .|... +++++= .++. +.|+++.|.+.|++.|
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEML-KKLELSEEDHRELKEYCESKG 89 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHH-HHhCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999999997654211 1111 1 12211 112211 1222 3789999999999999
Q ss_pred CEEEEeeecccCCCCCCCCCcceeecCCCCCCCCCCCCCcccccCCCccCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 014447 105 IKCLADMVINHRTAERKDGRGIYCIFEGGTSDDRLDWGPSFICRGDKEYSDGQGNDDTGEDFQPAPDIDHLNPRVQKELS 184 (424)
Q Consensus 105 i~VilD~v~NH~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~v~~~l~ 184 (424)
|.++-.. |. .
T Consensus 90 i~~~stp------------------fd----------------------------------------------------~ 99 (329)
T TIGR03569 90 IEFLSTP------------------FD----------------------------------------------------L 99 (329)
T ss_pred CcEEEEe------------------CC----------------------------------------------------H
Confidence 9876421 00 1
Q ss_pred HHHHHHHHhcCCCeEEecccCCCCHHHHHHHHHhcCCCe
Q 014447 185 DWMNWLKTEIGFDGWRFDFVKGYAPSITKVYMENTSPDF 223 (424)
Q Consensus 185 ~~~~~w~~~~gvDGfR~D~a~~~~~~~~~~~~~~~~p~~ 223 (424)
+.+.++.+ +|||.+-+-+......++++.+.+..+|++
T Consensus 100 ~svd~l~~-~~v~~~KIaS~~~~n~pLL~~~A~~gkPvi 137 (329)
T TIGR03569 100 ESADFLED-LGVPRFKIPSGEITNAPLLKKIARFGKPVI 137 (329)
T ss_pred HHHHHHHh-cCCCEEEECcccccCHHHHHHHHhcCCcEE
Confidence 12334444 899999998888888889999988888854
No 371
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=33.05 E-value=1.1e+02 Score=28.54 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=24.0
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPS 66 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~ 66 (424)
.+....++.....+++|+++|.++|++
T Consensus 76 ~~~~~~i~~a~~a~~~Gad~v~v~pP~ 102 (281)
T cd00408 76 NSTREAIELARHAEEAGADGVLVVPPY 102 (281)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 467888999999999999999999976
No 372
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=32.97 E-value=50 Score=31.47 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCC
Q 014447 174 HLNPRVQKELSDWMNWLKTEIGFDGWRFDFVKGYA 208 (424)
Q Consensus 174 ~~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~~~ 208 (424)
.++|+.|+.+++.+..+++++|.||+-+|-- .++
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E-~~~ 116 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE-ELP 116 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC-CCC
Confidence 4678899999998888888899999999973 443
No 373
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=32.77 E-value=49 Score=33.01 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
|.++|+++++-|.++|+-||.|-++.+..-+
T Consensus 181 ~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd 211 (393)
T COG0436 181 SKEELKAIVELAREHDIIIISDEIYEELVYD 211 (393)
T ss_pred CHHHHHHHHHHHHHcCeEEEEehhhhhcccC
Confidence 5899999999999999999999999988654
No 374
>PRK08960 hypothetical protein; Provisional
Probab=32.75 E-value=50 Score=32.55 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.||++|+-||+|-+..+.
T Consensus 183 ~~~~~~~l~~~~~~~~~~li~De~Y~~~ 210 (387)
T PRK08960 183 SRDELAALSQALRARGGHLVVDEIYHGL 210 (387)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEcccccc
Confidence 3789999999999999999999998655
No 375
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=32.61 E-value=1.5e+02 Score=28.22 Aligned_cols=54 Identities=19% Similarity=0.051 Sum_probs=32.8
Q ss_pred hHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 50 PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 50 ~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.+.++-|+++|-|.=+.... .| .+. +- -. ..+.+...+.+-|++++++|.+|++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~--~~-~~~-w~-g~-~~~~~~~~~~~~i~~lk~~G~kVii 72 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASG--GC-KPA-WG-GS-YPLDQGGWIKSDIAALRAAGGDVIV 72 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCC--CC-ccc-CC-CC-CCcccchhHHHHHHHHHHcCCeEEE
Confidence 56778999999886332221 00 000 00 00 1122356788889999999999888
No 376
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=32.61 E-value=38 Score=33.63 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
...|+..+++++++.||++|+.||+|-+.-
T Consensus 157 NPtg~~~dl~~I~~la~~~gi~lIvD~a~a 186 (388)
T PRK07811 157 NPLLSITDIAALAELAHDAGAKVVVDNTFA 186 (388)
T ss_pred CCcceecCHHHHHHHHHHcCCEEEEECCCC
Confidence 456888999999999999999999998753
No 377
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=32.44 E-value=48 Score=32.02 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=45.3
Q ss_pred hhhhHHHHcCCCEEEeCCCCCC--------------C-----CC---------CCCCcccccCCCCCCCCCHHHHHHHHH
Q 014447 47 NSIPDLSNAGITHVWLPPPSQS--------------V-----AP---------QGYMPGRLYDLDASKYGSQADLKSLIQ 98 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~--------------~-----~~---------~gY~~~d~~~id~~~~Gt~edl~~Lv~ 98 (424)
..+..|++.++..|+ =|+... | +- ..-...|...+|+.+.|+..+++++++
T Consensus 190 ~~~~~l~~~~~~~iE-eP~~~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~ 268 (324)
T TIGR01928 190 PRLKELDRYQLLYIE-EPFKIDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIE 268 (324)
T ss_pred HHHHHHhhCCCcEEE-CCCChhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHH
Confidence 457778888888887 555421 0 00 123356667788666899999999999
Q ss_pred HHHHcCCEEEEe
Q 014447 99 AFRQKGIKCLAD 110 (424)
Q Consensus 99 ~aH~~Gi~VilD 110 (424)
.|+++|+++++-
T Consensus 269 ~A~~~gi~~~~~ 280 (324)
T TIGR01928 269 TCREHGAKVWIG 280 (324)
T ss_pred HHHHcCCeEEEc
Confidence 999999999863
No 378
>PRK09989 hypothetical protein; Provisional
Probab=32.38 E-value=88 Score=28.89 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=40.1
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+.+.+.++..+.+|+..|.+.|-... .+.......+. ..+.|+++.+.|.+.|+++.+.-+.
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~~~---~~~~~~~~~~~------~~~~l~~l~~~a~~~gv~l~lE~l~ 146 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGVVP---AGEDAERYRAV------FIDNLRYAADRFAPHGKRILVEALS 146 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccCCC---CCCCHHHHHHH------HHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34566677889999999987663211 11111111100 2578999999999999999987543
No 379
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=32.35 E-value=3.9e+02 Score=25.23 Aligned_cols=38 Identities=13% Similarity=0.204 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
+++.+.++...+ .|+|-+++ |.+....|.-..++++..
T Consensus 147 ~~~~~~~~~~~~-~G~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 147 DYVFQLVDFLSD-LPIKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHH-cCCCEEEecCCCCCCCHHHHHHHHHHH
Confidence 478888888887 99999887 777777776666664443
No 380
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=32.34 E-value=1.1e+02 Score=28.91 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=43.2
Q ss_pred ceEEEeecCCCCCCCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHH-HHH
Q 014447 24 ALLFQGFNWESSNKAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA-FRQ 102 (424)
Q Consensus 24 ~v~~~~f~~ds~~~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~-aH~ 102 (424)
.|+.++-. ...+..++...+.+++|+++|.++|++ |+..+ .+++.+..++ |.+
T Consensus 72 ~vi~gv~~--------~st~~~i~~a~~a~~~Gad~v~v~~P~------------~~~~s------~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 72 PVIAGVGA--------NSTEEAIELARHAQDAGADAVLVIPPY------------YFKPS------QEELIDYFRAIADA 125 (289)
T ss_dssp EEEEEEES--------SSHHHHHHHHHHHHHTT-SEEEEEEST------------SSSCC------HHHHHHHHHHHHHH
T ss_pred EEEecCcc--------hhHHHHHHHHHHHhhcCceEEEEeccc------------cccch------hhHHHHHHHHHHhh
Confidence 46666554 368999999999999999999998864 23233 5555544444 455
Q ss_pred cCCEEEEeeec
Q 014447 103 KGIKCLADMVI 113 (424)
Q Consensus 103 ~Gi~VilD~v~ 113 (424)
-++.||+--.+
T Consensus 126 ~~~pi~iYn~P 136 (289)
T PF00701_consen 126 TDLPIIIYNNP 136 (289)
T ss_dssp SSSEEEEEEBH
T ss_pred cCCCEEEEECC
Confidence 77999874444
No 381
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.33 E-value=1.1e+02 Score=31.19 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEeeecccCCCC
Q 014447 89 SQADLKSLIQAFRQK--GIKCLADMVINHRTAE 119 (424)
Q Consensus 89 t~edl~~Lv~~aH~~--Gi~VilD~v~NH~~~~ 119 (424)
|.+++.+.|+.++++ ||.|-.|+.+.+-+..
T Consensus 291 t~e~~~~~v~~ir~~~pgi~i~~d~IvGfPgET 323 (455)
T PRK14335 291 TREHYLSLVGKLKASIPNVALSTDILIGFPGET 323 (455)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEEEEeCCCCC
Confidence 578999999999999 9999999999987654
No 382
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=32.29 E-value=2.6e+02 Score=28.64 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhcC
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENTS 220 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~~ 220 (424)
..+++.+.++...+ .|+|.+++ |++..+.+.-..+++++.+
T Consensus 161 t~~y~~~~a~~l~~-~Gad~I~IkDtaG~l~P~~v~~Lv~alk 202 (468)
T PRK12581 161 TLNYYLSLVKELVE-MGADSICIKDMAGILTPKAAKELVSGIK 202 (468)
T ss_pred cHHHHHHHHHHHHH-cCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 45678888888887 99999988 7777777777777655443
No 383
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=32.26 E-value=5.2e+02 Score=25.78 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=44.4
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeeecccCC
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed-l~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+-..-+|+.|..+|.+ +.++-..--..+++|..-+++..|..-| +..+.+++.++||+.= |.+|-+
T Consensus 58 eWar~fK~aGAKyvil--vakHHDGFaLw~t~ys~wnsvk~GpKrDlvgela~Avr~qGL~FG---vy~s~a 124 (430)
T COG3669 58 EWARLFKEAGAKYVIL--VAKHHDGFALWPTDYSVWNSVKRGPKRDLVGELAKAVREQGLRFG---VYLSGA 124 (430)
T ss_pred HHHHHHHHcCCcEEEE--eeeecCCeeecccccccccccccCCcccHHHHHHHHHHHcCCeee---EeeccC
Confidence 3345789999998875 4443333333455777766677887655 7888899999999864 345544
No 384
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=32.24 E-value=2.5e+02 Score=27.57 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHhc
Q 014447 180 QKELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMENT 219 (424)
Q Consensus 180 ~~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~~ 219 (424)
.+++.+.++...+ .|+|-+++ |.+....|.-..++++..
T Consensus 196 ~~~l~~~~~~~~~-~Gad~I~l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 196 PSKVAYVAKELYD-MGCYEISLGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred HHHHHHHHHHHHH-cCCCEEEecCCcCCcCHHHHHHHHHHH
Confidence 3578888888887 99999887 777777776666664443
No 385
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=32.17 E-value=1.3e+02 Score=28.56 Aligned_cols=51 Identities=18% Similarity=0.220 Sum_probs=35.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHH-HHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA-FRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~-aH~~Gi~Vil 109 (424)
+....++...+.+++|+++|.++|++ |+.++ .+++.+..++ +.+-++-|++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~~pP~------------y~~~~------~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILLLPPY------------LTEAP------QEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCC------------CCCCC------HHHHHHHHHHHHhcCCCCEEE
Confidence 57888899999999999999999876 22222 4554444433 3456777776
No 386
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.15 E-value=2.6e+02 Score=27.40 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=36.9
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
..+.+-.+.++++++ .|.|.|.++... .+|..+ +.+.++++.+.+.++||.|.+
T Consensus 266 e~~~~L~~ll~~l~~-~vnlIPyn~~~~------~~~~~p------s~e~i~~f~~~L~~~gi~v~v 319 (349)
T PRK14463 266 EDAKRLVRLLSDIPS-KVNLIPFNEHEG------CDFRSP------TQEAIDRFHKYLLDKHVTVIT 319 (349)
T ss_pred HHHHHHHHHHhccCc-eEEEEecCCCCC------CCCCCC------CHHHHHHHHHHHHHCCceEEE
Confidence 344444556666765 688888765421 233333 388999999999999999965
No 387
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=31.97 E-value=53 Score=26.48 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=41.9
Q ss_pred CcHHHHHhhhh-HHHHcCCCEEEeCCCCCCCCC-CCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 40 GWYNSLKNSIP-DLSNAGITHVWLPPPSQSVAP-QGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 40 G~~~gi~~~L~-ylk~lGv~~I~l~Pi~~~~~~-~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
|.-..+...+. +++.+|.....+......... ..-...|..-+= +.-|..++..++++.|+++|+++++
T Consensus 22 g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i-S~~g~~~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 22 GSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAI-SFSGETKETVEAAEIAKERGAKVIA 92 (139)
T ss_pred CchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHcCCeEEE
Confidence 45555555554 678888866655432221100 011233444444 6667778899999999999999854
No 388
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=31.96 E-value=1.1e+02 Score=30.03 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCC--C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSV--A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~--~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.....-...++..|+..+++. +-+.. . .......-...+. ..-|+..+++++.+.||++|+.|++|-+
T Consensus 97 ~s~~~~~~~~~~~G~~v~~v~-~~~~g~~~~~~l~~~i~~~~~lv~i~~~~-n~tG~~~~~~~I~~l~~~~g~~vivD~~ 174 (379)
T TIGR03402 97 PAVLSLCQHLEKQGYKVTYLP-VDEEGRLDLEELRAAITDDTALVSVMWAN-NETGTIFPIEEIGEIAKERGALFHTDAV 174 (379)
T ss_pred HHHHHHHHHHHHcCCEEEEEc-cCCCCcCCHHHHHHhcCCCcEEEEEEccc-CCeeecccHHHHHHHHHHcCCEEEEECc
Confidence 344444455667898887763 22110 0 1122222234455 6688888999999999999999999976
Q ss_pred c
Q 014447 113 I 113 (424)
Q Consensus 113 ~ 113 (424)
-
T Consensus 175 ~ 175 (379)
T TIGR03402 175 Q 175 (379)
T ss_pred c
Confidence 4
No 389
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=31.93 E-value=53 Score=31.33 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
+++..|+.+++.+..+++++|.||+-+|=
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiDW 116 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLDW 116 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeecc
Confidence 57888999999988888889999999994
No 390
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=31.91 E-value=57 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.497 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
.+++.|+.+++.+..|++++|.||+-+|-
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 56788999999998888889999999995
No 391
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=31.75 E-value=2.2e+02 Score=26.20 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhcCCCeEEeccc-CCCCHHHHHHHHHhcCC-Ce-EEeee
Q 014447 179 VQKELSDWMNWLKTEIGFDGWRFDFV-KGYAPSITKVYMENTSP-DF-AVGEK 228 (424)
Q Consensus 179 v~~~l~~~~~~w~~~~gvDGfR~D~a-~~~~~~~~~~~~~~~~p-~~-~v~E~ 228 (424)
.+..+.++++...+ +|+|.+-+-.- -.+|.+-+.++++..+. .| .+.|+
T Consensus 69 ~q~~~~~Yl~~~k~-lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 69 SKGKFDEYLNECDE-LGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred HhhhHHHHHHHHHH-cCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 34556667777666 99999988664 56788888888777654 34 56664
No 392
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=31.74 E-value=61 Score=29.42 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=50.0
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------------------CCC---------CCCcccccCCCCCCCCCHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQ---------GYMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------------------~~~---------gY~~~d~~~id~~~~Gt~ed 92 (424)
+....++.++.|+++++..|+ -|+.... +-+ .-...|...+|+.+.|+..+
T Consensus 106 ~~~~a~~~~~~l~~~~i~~iE-eP~~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~ 184 (229)
T cd00308 106 TPKEAIRLIRALEKYGLAWIE-EPCAPDDLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTE 184 (229)
T ss_pred CHHHHHHHHHHhhhcCCCeEE-CCCCccCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHH
Confidence 467788888888889998888 4654311 000 12245666777667899999
Q ss_pred HHHHHHHHHHcCCEEEE
Q 014447 93 LKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~Vil 109 (424)
.+++++.|+++|+.+++
T Consensus 185 ~~~i~~~a~~~gi~~~~ 201 (229)
T cd00308 185 SRRAADLAEAFGIRVMV 201 (229)
T ss_pred HHHHHHHHHHcCCEEee
Confidence 99999999999998886
No 393
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.73 E-value=40 Score=34.15 Aligned_cols=62 Identities=13% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHcCCCEEEeC-CCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLP-PPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~-Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|+..+++- |.-. ..-...-...-...+. ...|...|++++++.||++|+.||+|-..
T Consensus 128 ~l~~~Gi~v~~vdd~~d~e~l~~ai~~~tklV~ie~~s-Np~G~v~Dl~~I~~la~~~gi~liVD~t~ 194 (436)
T PRK07812 128 TLPKLGIEVSFVEDPDDLDAWRAAVRPNTKAFFAETIS-NPQIDVLDIPGVAEVAHEAGVPLIVDNTI 194 (436)
T ss_pred HhhcCeEEEEEECCCCCHHHHHHhCCCCCeEEEEECCC-CCCCeecCHHHHHHHHHHcCCEEEEECCC
Confidence 3567888888774 3100 0001111222234455 66899999999999999999999999863
No 394
>PRK05926 hypothetical protein; Provisional
Probab=31.56 E-value=56 Score=32.30 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
.+. |.--|.++..+.++.||+.||++-.=+++-|.
T Consensus 198 ~~~-p~~~t~~e~l~~i~~a~~~Gi~~~sgmi~G~g 232 (370)
T PRK05926 198 TLA-PGRLSSQGFLEIHKTAHSLGIPSNATMLCYHR 232 (370)
T ss_pred hhC-CCCCCHHHHHHHHHHHHHcCCcccCceEEeCC
Confidence 355 55557788999999999999999998888765
No 395
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=31.55 E-value=45 Score=32.77 Aligned_cols=33 Identities=24% Similarity=0.486 Sum_probs=28.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++ ...|+..+++++++.||++|..||+|-..-
T Consensus 154 ~p~-~~~G~~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 154 HVD-GEYGNLPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCC-CCCccccCHHHHHHHHHHcCCeEEEECccc
Confidence 356 678999999999999999999999998743
No 396
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=31.48 E-value=1.2e+02 Score=29.42 Aligned_cols=58 Identities=19% Similarity=0.266 Sum_probs=38.5
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeec
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVI 113 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi-~VilD~v~ 113 (424)
+.++.|++.|++.|.++= ++..+.-|..+- . -|+.+...+.+++|.+.|+ .|-+..|+
T Consensus 105 ~~~~~L~~aGl~~v~ISl-------Ds~~~e~~~~i~-~-~g~~~~vl~~i~~~~~~Gi~~v~in~v~ 163 (329)
T PRK13361 105 RFAAELADAGLKRLNISL-------DTLRPELFAALT-R-NGRLERVIAGIDAAKAAGFERIKLNAVI 163 (329)
T ss_pred HHHHHHHHcCCCeEEEEe-------ccCCHHHhhhhc-C-CCCHHHHHHHHHHHHHcCCCceEEEEEE
Confidence 455666667777666531 222333344444 3 4778899999999999999 78888776
No 397
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=31.42 E-value=1.4e+02 Score=28.20 Aligned_cols=60 Identities=5% Similarity=-0.057 Sum_probs=39.8
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH-HHHHHHHHHHcCCEEEEeeecccCC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD-LKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed-l~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.+....++...+.+++|+++|.++|++ |+... .++ ++.+-+-|.+-++.||+==.+..++
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~P~------------y~~~~------~~~l~~~f~~va~a~~lPv~iYn~P~~tg 143 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVTPF------------YYPFS------FEEICDYYREIIDSADNPMIVYNIPALTG 143 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCc------------CCCCC------HHHHHHHHHHHHHhCCCCEEEEeCchhhc
Confidence 358899999999999999999999965 22222 333 3344444555677777654443333
No 398
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.31 E-value=42 Score=33.22 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=40.1
Q ss_pred HHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 52 LSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 52 lk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
++..|++.+++.+.-. ..-...-...=...+. ...|...+++++++.||++|+.||+|-..
T Consensus 106 ~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~ps-nptg~v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 106 VPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPT-NPLQKIVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred HHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCC-CCCCeeecHHHHHHHHHHcCCEEEEECCC
Confidence 4668998888754210 0001111122223455 66888889999999999999999999873
No 399
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=31.29 E-value=1.6e+02 Score=27.97 Aligned_cols=56 Identities=9% Similarity=0.084 Sum_probs=39.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHH-Hc-CCEEEEeeec
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFR-QK-GIKCLADMVI 113 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH-~~-Gi~VilD~v~ 113 (424)
.+....++...+.+++|+++|.++|++ |+..+ .+++.+..++.. +. ++.||+==.+
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~P~------------y~~~~------~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVTPF------------YYKFS------FPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCc------------CCCCC------HHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 368889999999999999999999866 33333 456655555543 34 6777754333
No 400
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=31.19 E-value=61 Score=26.56 Aligned_cols=21 Identities=10% Similarity=0.325 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCEEEE
Q 014447 89 SQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~Vil 109 (424)
+.+|++++++.|++++++|.+
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~ 29 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRV 29 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEE
Confidence 789999999999999999875
No 401
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=30.79 E-value=55 Score=33.14 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
++++++++.+-|+++||.||.|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 378999999999999999999998
No 402
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=30.78 E-value=1.2e+02 Score=27.99 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.3
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~edl~~Lv~~aH~~Gi~VilD 110 (424)
..-||++|++++.|. + .+=- ..|| |.+.+.+-+++|.+.||.+|+=
T Consensus 77 ~~mL~d~G~~~viiG----H-----------SERR-~~f~Et~~~i~~Kv~~a~~~gl~pIvC 123 (242)
T cd00311 77 AEMLKDAGAKYVIIG----H-----------SERR-QYFGETDEDVAKKVKAALEAGLTPILC 123 (242)
T ss_pred HHHHHHcCCCEEEeC----c-----------cccc-CcCCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 457899999999876 1 1111 1122 5788999999999999999973
No 403
>PRK08445 hypothetical protein; Provisional
Probab=30.77 E-value=80 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=30.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 80 ~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
..+. |+--|.++..+.++.||+.||++..-+.+-|.
T Consensus 172 ~~~~-pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~G~~ 207 (348)
T PRK08445 172 DIIA-PKKLDSDRWLEVHRQAHLIGMKSTATMMFGTV 207 (348)
T ss_pred HhhC-CCCCCHHHHHHHHHHHHHcCCeeeeEEEecCC
Confidence 3455 66667788889999999999999999999875
No 404
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=30.72 E-value=41 Score=33.30 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=40.0
Q ss_pred HHHHcCCCEEEeCCCC-C---CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPS-Q---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~-~---~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+++..|+..+++...- + ..-...-...=...+. ...|+..+++++++.||++|+.||+|-+.-
T Consensus 113 ~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~le~p~-np~g~~~dl~~I~~la~~~gi~livD~a~~ 179 (380)
T TIGR01325 113 ILPRFGIEVSFVDPTDLNAWEAAVKPNTKLVFVETPS-NPLGELVDIAALAELAHAIGALLVVDNVFA 179 (380)
T ss_pred HHHHhCCEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCCeeeCHHHHHHHHHHcCCEEEEECCCc
Confidence 5567888777664320 0 0000111122123345 567888899999999999999999999853
No 405
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.70 E-value=1.3e+02 Score=28.90 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=38.5
Q ss_pred hhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCC-EEEEeeec
Q 014447 47 NSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGI-KCLADMVI 113 (424)
Q Consensus 47 ~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi-~VilD~v~ 113 (424)
+.++.|++.|++.|.++- ++....-|..+. .. ++.+++.+-++.|.+.|+ .|.+-.|+
T Consensus 109 ~~~~~L~~agl~~i~ISl-------ds~~~e~~~~i~-~~-~~~~~vl~~i~~~~~~g~~~v~i~~vv 167 (331)
T PRK00164 109 RRAAALKDAGLDRVNVSL-------DSLDPERFKAIT-GR-DRLDQVLAGIDAALAAGLTPVKVNAVL 167 (331)
T ss_pred HHHHHHHHcCCCEEEEEe-------ccCCHHHhccCC-CC-CCHHHHHHHHHHHHHCCCCcEEEEEEE
Confidence 455666667776666543 222233344555 43 678899999999999999 77777766
No 406
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.63 E-value=1.7e+02 Score=29.04 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=36.6
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
..+.+-.+.++++++ .|-|.|.++.+ ..+|..++ .++++++.+.+.++|+.|.+
T Consensus 278 e~a~~La~ll~~l~~-~VnLIPYN~~~------~~~~~~ps------~e~v~~f~~~L~~~Gi~vti 331 (372)
T PRK11194 278 EHAHQLAELLKDTPC-KINLIPWNPFP------GAPYGRSS------NSRIDRFSKVLMEYGFTVIV 331 (372)
T ss_pred HHHHHHHHHHhcCCc-eEEEecCCCCC------CCCCCCCC------HHHHHHHHHHHHHCCCeEEE
Confidence 344444456677765 88888877543 12333333 78899999999999999864
No 407
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.49 E-value=2e+02 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=39.8
Q ss_pred HHHHHhh----hhHHHHcCCCEEEeCCCCCCCCCCCCCccccc-----CCCCCCCCC-H----HHHHHHHHHHHHc---C
Q 014447 42 YNSLKNS----IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLY-----DLDASKYGS-Q----ADLKSLIQAFRQK---G 104 (424)
Q Consensus 42 ~~gi~~~----L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~-----~id~~~~Gt-~----edl~~Lv~~aH~~---G 104 (424)
++.+++. ...+++.|++.|.|. ..|||-...|. .-+ -.||+ . .-+.+.|+++++. +
T Consensus 136 i~~~i~~~~~aA~~a~~aGfDgveih------~~~gyL~~qFlsp~~n~R~-d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 136 IEQIIEDFAAAARRAKEAGFDGVEIH------GAHGYLLSQFLSPYTNKRT-DEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc------chhhhHHHHhcCccccCCC-cccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444443 357788999999997 34676322221 222 35664 2 2356677777763 6
Q ss_pred CEEEEeeecc
Q 014447 105 IKCLADMVIN 114 (424)
Q Consensus 105 i~VilD~v~N 114 (424)
+.|.+++-+.
T Consensus 209 ~~i~vris~~ 218 (327)
T cd02803 209 FPVGVRLSAD 218 (327)
T ss_pred ceEEEEechh
Confidence 7888887664
No 408
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=30.48 E-value=26 Score=34.35 Aligned_cols=71 Identities=8% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHhhhhHHH-HcCCCEEEeCCCCCCC-C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 42 YNSLKNSIPDLS-NAGITHVWLPPPSQSV-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 42 ~~gi~~~L~ylk-~lGv~~I~l~Pi~~~~-~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.+...-+..+. ..|++..++..-.... . .......-+..++ ..-|...+++++.+.||++|+-+++|.
T Consensus 98 ~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~-~~tG~~~pi~~I~~~~~~~~~~~~vD~ 176 (371)
T PF00266_consen 98 HPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVE-NSTGVRNPIEEIAKLAHEYGALLVVDA 176 (371)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBE-TTTTBBSSHHHHHHHHHHTTSEEEEE-
T ss_pred ccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeeccc-ccccEEeeeceehhhhhccCCceeEec
Confidence 445554455553 6788877774322221 1 2455666678888 899999999999999999999999998
Q ss_pred ec
Q 014447 112 VI 113 (424)
Q Consensus 112 v~ 113 (424)
+=
T Consensus 177 ~~ 178 (371)
T PF00266_consen 177 AQ 178 (371)
T ss_dssp TT
T ss_pred hh
Confidence 73
No 409
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=30.42 E-value=79 Score=30.96 Aligned_cols=35 Identities=17% Similarity=0.162 Sum_probs=28.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 80 YDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 80 ~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
..+. +.-.+.++..+.++.||+.||++..=+.+-|
T Consensus 178 ~~i~-~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~Gl 212 (351)
T TIGR03700 178 QQIC-PEKISAERWLEIHRTAHELGLKTNATMLYGH 212 (351)
T ss_pred hhcC-CCCCCHHHHHHHHHHHHHcCCCcceEEEeeC
Confidence 4555 5445678888999999999999999999887
No 410
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=30.33 E-value=55 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecccCC
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDFVKG 206 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~a~~ 206 (424)
.++.-|+.+++.+..+++++|+||+-+|-=..
T Consensus 95 ~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~ 126 (343)
T PF00704_consen 95 SNPAKRQNFINNIVSFLKKYGFDGIDIDWEYP 126 (343)
T ss_dssp HSHHHHHHHHHHHHHHHHHHT-SEEEEEESST
T ss_pred ccHHHHHHHHHhhhhhhcccCcceeeeeeeec
Confidence 35678899999999888889999999987444
No 411
>PLN00175 aminotransferase family protein; Provisional
Probab=30.26 E-value=58 Score=32.58 Aligned_cols=29 Identities=10% Similarity=0.289 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 205 s~~~l~~l~~~a~~~~~~ii~De~Y~~l~ 233 (413)
T PLN00175 205 TREELELIASLCKENDVLAFTDEVYDKLA 233 (413)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence 47899999999999999999999987764
No 412
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=30.21 E-value=55 Score=32.97 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||.|-+..|..
T Consensus 208 ~~~~l~~i~~~a~~~~i~ii~De~Y~~~~ 236 (430)
T PLN00145 208 SYEHLAKIAETARKLGILVIADEVYDHLT 236 (430)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence 47899999999999999999999998764
No 413
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=30.09 E-value=1.2e+02 Score=28.00 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHhhhhHHHHcCCCEEEeCC
Q 014447 43 NSLKNSIPDLSNAGITHVWLPP 64 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~P 64 (424)
..+.+.|+.++++|+++|.+.|
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~ 36 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSP 36 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCC
Confidence 4566889999999999999997
No 414
>PRK07568 aspartate aminotransferase; Provisional
Probab=30.01 E-value=55 Score=32.29 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.||++|+.||+|-+....
T Consensus 180 ~~~~~~~i~~~~~~~~~~ii~De~y~~~ 207 (397)
T PRK07568 180 TKEELEMLAEIAKKHDLFLISDEVYREF 207 (397)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccchhc
Confidence 4789999999999999999999998655
No 415
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=30.00 E-value=1.5e+02 Score=28.22 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=35.6
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHH-HHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQA-FRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~-aH~~Gi~Vil 109 (424)
.....++...+.+++|+++|-++|++ |+... .+++.+..++ |.+.++-||+
T Consensus 84 ~t~~ai~~a~~a~~~Gadav~~~pP~------------y~~~s------~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 84 NTSDAIEIARLAEKAGADGYLLLPPY------------LINGE------QEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred cHHHHHHHHHHHHHhCCCEEEECCCC------------CCCCC------HHHHHHHHHHHHhccCCCEEE
Confidence 47888899999999999999999975 33233 4554444333 4455677776
No 416
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.95 E-value=74 Score=29.38 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
.+.+.+.++..+.||+..|-+.+-. ...++...... --..+.|+++.+.|.+.||++.+.-+ ||
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~---~~~~~~~~~~~------~~~~~~l~~l~~~a~~~Gv~l~lE~~-n~ 147 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGK---TPAGFSSEQIH------ATLVENLRYAANMLMKEDILLLIEPI-NH 147 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCC---CCCCCCHHHHH------HHHHHHHHHHHHHHHHcCCEEEEEeC-CC
Confidence 3557777889999999998764311 01111111000 00135678888889999999999865 44
No 417
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=29.91 E-value=1.1e+02 Score=29.69 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=42.7
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
+.+.+.....-.|-+|++=||+-. .|..+ +. .+=++.|.+.|+++|+-+|+|-|..-.+...
T Consensus 166 ~~~~~~~~~~~~iaavivEPi~g~---~G~~~-----~~------~~~l~~l~~lc~~~gillI~DEV~tG~gRtG 227 (339)
T PF00202_consen 166 LEELIAALNADEIAAVIVEPIQGE---GGMIP-----PP------PEYLRELRELCREHGILLIADEVQTGFGRTG 227 (339)
T ss_dssp HHHHHHHHHGGGEEEEEEESSBTT---TTSBE-----E-------TTHHHHHHHHHHHTT-EEEEEETTTTTTTTS
T ss_pred HHHHHHhhcCCcEEEEEEeccccc---cCccc-----cc------cchhhehcccccccccceecccccccccccC
Confidence 444455555666889999997743 23222 22 4468999999999999999999998775443
No 418
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.90 E-value=2.3e+02 Score=26.35 Aligned_cols=59 Identities=7% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+.+-...+|++|++.|.=. .|+ ..-.|.+|.-+. ++.|+.|.+.|++.||.++-|+-
T Consensus 29 e~~~~~a~~~~~~g~~~~r~g-~~k----pRts~~sf~G~G------~~gl~~L~~~~~~~Gl~~~Tev~ 87 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFRGG-AYK----PRTSAASFQGLG------LQGIRYLHEVCQEFGLLSVSEIM 87 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEec-ccC----CCCCCcccCCCC------HHHHHHHHHHHHHcCCCEEEeeC
Confidence 334444556999999666522 222 122222333333 78999999999999999998753
No 419
>PRK15029 arginine decarboxylase; Provisional
Probab=29.59 E-value=40 Score=36.67 Aligned_cols=28 Identities=11% Similarity=-0.004 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 014447 84 ASKYGSQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 84 ~~~~Gt~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
|.-+|..-|++.+++.||++|+.|++|-
T Consensus 321 PTY~Gv~~di~~I~~~~h~~~~~llvDE 348 (755)
T PRK15029 321 CTYDGVCYNAKEAQDLLEKTSDRLHFDE 348 (755)
T ss_pred CCCcceeeCHHHHHHHHHhcCCeEEEEC
Confidence 4557888899999999999999999994
No 420
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=29.59 E-value=1.2e+02 Score=30.73 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHc--CCEEEEeeecccCCCC
Q 014447 89 SQADLKSLIQAFRQK--GIKCLADMVINHRTAE 119 (424)
Q Consensus 89 t~edl~~Lv~~aH~~--Gi~VilD~v~NH~~~~ 119 (424)
|.++++++|+.++++ ||.|..|+.+.+-+..
T Consensus 281 t~~~~~~~v~~lr~~~pgi~i~td~IvGfPgET 313 (445)
T PRK14340 281 TIEEYLEKIALIRSAIPGVTLSTDLIAGFCGET 313 (445)
T ss_pred CHHHHHHHHHHHHHhCCCCEEeccEEEECCCCC
Confidence 688999999999999 9999999999877654
No 421
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=29.49 E-value=71 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.++++++.+-|+++|+.||.|-
T Consensus 196 s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 196 SMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 58899999999999999999997
No 422
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=29.47 E-value=48 Score=33.20 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 81 DLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 81 ~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 153 ~P~-NPtG~v~dl~~I~~la~~~gi~vIvD~a~a 185 (405)
T PRK08776 153 TPS-NPLLRITDLRFVIEAAHKVGALTVVDNTFL 185 (405)
T ss_pred CCC-CCCCccCCHHHHHHHHHHcCCEEEEECCCc
Confidence 344 557777899999999999999999999863
No 423
>TIGR03620 F420_MSMEG_4141 probable F420-dependent oxidoreductase, MSMEG_4141 family. Members of this protein family, related to F420-dependent oxidoreductases within the larger family of a bacterial luciferase (an FMN-dependent enzyme), occurs only within the small subset of species that synthesize F420. Most such proteins are from members of the Actinobacteria, but at least one species, Sphingomonas wittichii, belongs to the Alphaproteobacteria.
Probab=29.24 E-value=74 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCC
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPS 66 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~ 66 (424)
.||=..+.++|..+++.|++.|.+.|.-
T Consensus 233 ~Gtp~ev~e~l~~~~~aGvd~l~l~~~~ 260 (278)
T TIGR03620 233 WGDADTVAARVREHLDAGADHVAVQVLT 260 (278)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 5999999999999999999999999843
No 424
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.16 E-value=1.1e+02 Score=28.47 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEee
Q 014447 42 YNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 42 ~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
++-+...++.-+.||+..|.+.|... +|... -+ ..+- ..+.++.|.+.|.++||+|.+.-
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-----~~~~~----~~-~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-----GYLTP----PN-VIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-----CCCCC----HH-HHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 44566677888999999999887532 22111 11 1111 13568999999999999999983
No 425
>PRK07324 transaminase; Validated
Probab=29.15 E-value=69 Score=31.48 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.|+++|+.||+|-+..+.
T Consensus 171 ~~~~l~~i~~~a~~~~~~ii~De~y~~l 198 (373)
T PRK07324 171 DRAYLEEIVEIARSVDAYVLSDEVYRPL 198 (373)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEcccccc
Confidence 5889999999999999999999987544
No 426
>PF15614 WHIM3: WSTF, HB1, Itc1p, MBD9 motif 3
Probab=29.14 E-value=35 Score=22.64 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHH-HHcCCE
Q 014447 87 YGSQADLKSLIQAF-RQKGIK 106 (424)
Q Consensus 87 ~Gt~edl~~Lv~~a-H~~Gi~ 106 (424)
|-+.+++.+|++++ |-+|+|
T Consensus 4 ~~~~e~ld~L~~aL~~prG~R 24 (46)
T PF15614_consen 4 YDDPEELDELLKALENPRGKR 24 (46)
T ss_pred ccCHHHHHHHHHHHcCcccHh
Confidence 34789999999999 888875
No 427
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=29.14 E-value=51 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.3
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCC
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQS 68 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~ 68 (424)
.+.+.|+.+++.|++.|.+.|++..
T Consensus 46 ~i~~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 46 DTEEAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred CHHHHHHHHHHcCCCeEEEEeCccc
Confidence 4667788899999999999998865
No 428
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.01 E-value=42 Score=33.23 Aligned_cols=62 Identities=19% Similarity=0.080 Sum_probs=42.3
Q ss_pred HHHHcCCCEEEeCCCCCC-CC--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQS-VA--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~-~~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..+..|++.+++..-... .. ...-...-...++ ..-|+..+++++++.||++|+.|++|.+-
T Consensus 126 ~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a~ 196 (398)
T TIGR03392 126 VAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMS-NVTGGCPDLARAITLAHQYGAVVVVDGAQ 196 (398)
T ss_pred HHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECcc-ccccccCCHHHHHHHHHHcCCEEEEEhhh
Confidence 346789888887431111 00 1112233345566 77899999999999999999999999875
No 429
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.00 E-value=61 Score=26.04 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.6
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 77 GRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 77 ~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.|..-+= +.-|..++..+.++.|+++|++||.
T Consensus 48 ~dl~I~i-S~SG~t~~~~~~~~~a~~~g~~vi~ 79 (120)
T cd05710 48 KSVVILA-SHSGNTKETVAAAKFAKEKGATVIG 79 (120)
T ss_pred CcEEEEE-eCCCCChHHHHHHHHHHHcCCeEEE
Confidence 3443344 6778889999999999999999886
No 430
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.97 E-value=86 Score=31.28 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=47.7
Q ss_pred CCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCC-----CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 38 AGGWYNSLKNSIPDLSNAGITHVWLPPPSQSV-----APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 38 ~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-----~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.||++.-+..- ++..||+..+.-|--... ......+.-...+- ...-...|++++.+.||++|+.||+|=.
T Consensus 112 YG~t~~~~~~~---l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPs-NP~l~v~DI~~i~~~A~~~g~~vvVDNT 187 (396)
T COG0626 112 YGGTYRLFEKI---LQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPS-NPLLEVPDIPAIARLAKAYGALVVVDNT 187 (396)
T ss_pred cchHHHHHHHH---HHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCC-CcccccccHHHHHHHHHhcCCEEEEECC
Confidence 46777554443 355999998877643211 11234444344444 5566678899999999999999999955
Q ss_pred c
Q 014447 113 I 113 (424)
Q Consensus 113 ~ 113 (424)
+
T Consensus 188 f 188 (396)
T COG0626 188 F 188 (396)
T ss_pred c
Confidence 4
No 431
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=28.94 E-value=62 Score=31.69 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEecc
Q 014447 175 LNPRVQKELSDWMNWLKTEIGFDGWRFDF 203 (424)
Q Consensus 175 ~np~v~~~l~~~~~~w~~~~gvDGfR~D~ 203 (424)
.++..|+.+++.+..|++++|.||+-+|-
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiDw 120 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLDW 120 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence 56788999999988888889999999994
No 432
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=28.93 E-value=3.4e+02 Score=25.23 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCCCCC--CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHH---HHHHHHHHHHc-CCE
Q 014447 33 ESSNKAG--GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQAD---LKSLIQAFRQK-GIK 106 (424)
Q Consensus 33 ds~~~~~--G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~ed---l~~Lv~~aH~~-Gi~ 106 (424)
||+=|++ -+..++.++.....+-|.+.|=+......|. ...++ .++| ++.+|+++++. ++.
T Consensus 11 dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~--------~~~i~-----~~~E~~rl~~~v~~~~~~~~~p 77 (257)
T TIGR01496 11 DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG--------ADRVS-----PEEELNRVVPVIKALRDQPDVP 77 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC--------CCCCC-----HHHHHHHHHHHHHHHHhcCCCe
Confidence 5555543 2468888888888999999999964333221 11222 3445 88888999987 999
Q ss_pred EEEe
Q 014447 107 CLAD 110 (424)
Q Consensus 107 VilD 110 (424)
|.+|
T Consensus 78 lsiD 81 (257)
T TIGR01496 78 ISVD 81 (257)
T ss_pred EEEe
Confidence 9998
No 433
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=28.82 E-value=42 Score=33.00 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 86 KYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
..|+..+++++++.||++|+.|++|.+-
T Consensus 161 ~~g~~~~~~~i~~~a~~~gi~vivD~a~ 188 (363)
T TIGR01437 161 VQKSMLSVEDAAQVAQEHNLPLIVDAAA 188 (363)
T ss_pred CcCCcCCHHHHHHHHHHcCCeEEEECCC
Confidence 3566778889999999999999999974
No 434
>PTZ00376 aspartate aminotransferase; Provisional
Probab=28.72 E-value=66 Score=32.00 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRTA 118 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~~ 118 (424)
+.++++++++.|+++|+-||.|-++.+...
T Consensus 194 s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~ 223 (404)
T PTZ00376 194 TEEQWKEIADVMKRKNLIPFFDMAYQGFAS 223 (404)
T ss_pred CHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence 588999999999999999999999987753
No 435
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.67 E-value=2.4e+02 Score=26.96 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=44.8
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
..+..++...+.+++|+++|.+.|++ |+..+ .-|-.+-|+.+ |.+-++-||+==++..++.+-
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~Py------------Y~k~~--~~gl~~hf~~i---a~a~~lPvilYN~P~~tg~~l 146 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPY------------YNKPS--QEGLYAHFKAI---AEAVDLPVILYNIPSRTGVDL 146 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCC------------CcCCC--hHHHHHHHHHH---HHhcCCCEEEEeCccccCCCC
Confidence 47889999999999999999999876 44443 22333344444 444488898888887776653
No 436
>PRK07671 cystathionine beta-lyase; Provisional
Probab=28.66 E-value=53 Score=32.49 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 82 LDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 82 id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+. ...|...+++++++.||++|+.||+|-+..
T Consensus 143 P~-NPtg~~~dl~~I~~la~~~g~~lvvD~a~~ 174 (377)
T PRK07671 143 PT-NPLLKITDIKKISTIAKEKGLLTIVDNTFM 174 (377)
T ss_pred CC-CCCCcccCHHHHHHHHHHcCCEEEEECCCC
Confidence 44 557888899999999999999999998864
No 437
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=28.60 E-value=65 Score=32.02 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.++++++++.|+++|+-||+|-+..+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (403)
T TIGR01265 188 RDHLQKIAEVARKLGIPIIADEIYGHMV 215 (403)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 5899999999999999999999987653
No 438
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=28.56 E-value=63 Score=30.26 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=24.7
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGS--QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt--~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++|. .++|+++++.++++|..||+|+=++
T Consensus 65 ~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~ 96 (261)
T TIGR02127 65 ERFGSEGFKALEEVIAHARSLGLPVLADVKRG 96 (261)
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 34554 6788889999999999999998775
No 439
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=28.35 E-value=1.4e+02 Score=29.72 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=51.3
Q ss_pred HHHHhhhhHHHHcCCCEEEeCCCCCCCC---------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 43 NSLKNSIPDLSNAGITHVWLPPPSQSVA---------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 43 ~gi~~~L~ylk~lGv~~I~l~Pi~~~~~---------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+++-+.||+..|+..-||.|=-.+.- ...--......++ ..-|+.+.++++.+-|+++|+-.-+|.|
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aN-nE~G~IQpI~ei~~i~k~~~i~fHvDAv 179 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHAN-NETGTIQPIAEIGEICKERGILFHVDAV 179 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecc-cCeeecccHHHHHHHHHHcCCeEEEehh
Confidence 4577778888888999988876433210 1122233456678 9999999999999999999988888866
No 440
>PRK06108 aspartate aminotransferase; Provisional
Probab=28.27 E-value=58 Score=31.90 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||+|-+.-+..
T Consensus 176 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 204 (382)
T PRK06108 176 SRDDLRAILAHCRRHGLWIVADEVYERLY 204 (382)
T ss_pred CHHHHHHHHHHHHHCCcEEEEehhhhhhc
Confidence 58899999999999999999999876653
No 441
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=28.26 E-value=48 Score=32.40 Aligned_cols=29 Identities=31% Similarity=0.286 Sum_probs=25.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
...|+.++++++++.||++|+.||+|-+.
T Consensus 179 ~~~G~~~~l~~i~~ia~~~~~~li~De~~ 207 (385)
T PRK05958 179 SMDGDLAPLAELVALARRHGAWLLVDEAH 207 (385)
T ss_pred cCCCCcCCHHHHHHHHHHhCCEEEEECcc
Confidence 44566778999999999999999999986
No 442
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.18 E-value=45 Score=26.27 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=33.0
Q ss_pred HHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Q 014447 45 LKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCL 108 (424)
Q Consensus 45 i~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vi 108 (424)
+.+-++.+...|++.|++.|++-..+.|-- .+|- .. ..+..+..+ .++|++|-
T Consensus 44 i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~-----~Dip-ge--~~~SW~~~l---~~~g~~v~ 96 (103)
T cd03413 44 LDDVLAKLKKAGIKKVTLMPLMLVAGDHAH-----NDMA-GD--EPDSWKSIL---EAAGIKVE 96 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEehhheecccch-----hcCC-CC--CchhHHHHH---HHCCCeeE
Confidence 455566788999999999999977655431 1111 11 133455544 45588875
No 443
>PRK13561 putative diguanylate cyclase; Provisional
Probab=28.11 E-value=1.4e+02 Score=31.70 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=48.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCC-----------CcccccCCCCCCC-----CCHHHHHHHHHHHHHc
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGY-----------MPGRLYDLDASKY-----GSQADLKSLIQAFRQK 103 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY-----------~~~d~~~id~~~~-----Gt~edl~~Lv~~aH~~ 103 (424)
.+...+.+.+..|+++||..-. - .-+.|| -+.|+-+|| ..| ....-++.+++-||..
T Consensus 531 ~~~~~~~~~~~~l~~~G~~i~l-d-----dfG~g~ssl~~L~~l~~l~~d~lKiD-~s~i~~i~~~~~~v~~i~~~a~~l 603 (651)
T PRK13561 531 DDPHAAVAILRPLRNAGVRVAL-D-----DFGMGYAGLRQLQHMKSLPIDVLKID-KMFVDGLPEDDSMVAAIIMLAQSL 603 (651)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE-E-----CCCCCcccHHHHhhcCCCCCcEEEEC-HHHHhcCCCCHHHHHHHHHHHHHC
Confidence 4677888899999999996544 1 112222 246777777 322 2345689999999999
Q ss_pred CCEEEEeeecc
Q 014447 104 GIKCLADMVIN 114 (424)
Q Consensus 104 Gi~VilD~v~N 114 (424)
||+||..-|=+
T Consensus 604 ~i~viAegVE~ 614 (651)
T PRK13561 604 NLQVIAEGVET 614 (651)
T ss_pred CCcEEEecCCC
Confidence 99999997754
No 444
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.00 E-value=1.4e+02 Score=28.03 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=33.9
Q ss_pred HHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCE
Q 014447 44 SLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIK 106 (424)
Q Consensus 44 gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~ 106 (424)
|+.+.+++++++|+++++|.+ .+|..|. .+.-+.++.+.+-+++.+.++.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~--~~P~~w~-----------~~~~~~~~~~~~~~~~~~~~~~ 61 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFL--KSPRWWR-----------RPMLEEEVIDWFKAALETNKNL 61 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEe--cCccccC-----------CCCCCHHHHHHHHHHHHHcCCC
Confidence 567789999999999999932 2222221 2333466677777777888876
No 445
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=27.97 E-value=64 Score=32.84 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEeee
Q 014447 90 QADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
+++++++.+-|+++||+|++|-.
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 78999999999999999999964
No 446
>PLN02692 alpha-galactosidase
Probab=27.97 E-value=71 Score=31.99 Aligned_cols=52 Identities=23% Similarity=0.238 Sum_probs=33.8
Q ss_pred HHHHcCCCEEEeCCCCCCC--CCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 51 DLSNAGITHVWLPPPSQSV--APQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~~--~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
-|+++|+++|.|=--+... ...|. ..+|+.+|- ..+|.|++.+|++|||.=+
T Consensus 86 gl~~~Gy~yv~iDDgW~~~~rd~~G~-----~~~d~~kFP--~G~k~ladyiH~~GLKfGI 139 (412)
T PLN02692 86 GLSKLGYTYVNIDDCWAEIARDEKGN-----LVPKKSTFP--SGIKALADYVHSKGLKLGI 139 (412)
T ss_pred cchhcCcEEEEEcCCcCCCCCCCCCC-----eeeChhhcC--CcHHHHHHHHHHCCCceEE
Confidence 4588999999875544322 12222 234423442 3599999999999999765
No 447
>PRK07777 aminotransferase; Validated
Probab=27.91 E-value=65 Score=31.73 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.+++++|++.|+++|+.||+|-+..+..
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~ 205 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLV 205 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence 46899999999999999999999887653
No 448
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=27.90 E-value=70 Score=29.65 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
+.+++++|++.|++.||.+++.+
T Consensus 136 ~~~~l~~l~~~a~~lGle~LVEV 158 (247)
T PRK13957 136 TPSQIKSFLKHASSLGMDVLVEV 158 (247)
T ss_pred CHHHHHHHHHHHHHcCCceEEEE
Confidence 36789999999999999999986
No 449
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.82 E-value=3.3e+02 Score=24.60 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCCCeEEe-cccCCCCHHHHHHHHHh
Q 014447 181 KELSDWMNWLKTEIGFDGWRF-DFVKGYAPSITKVYMEN 218 (424)
Q Consensus 181 ~~l~~~~~~w~~~~gvDGfR~-D~a~~~~~~~~~~~~~~ 218 (424)
+++.+.++...+ .|+|.+++ |.+..+.|.-..++++.
T Consensus 137 ~~~~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~v~~lv~~ 174 (237)
T PF00682_consen 137 EELLELAEALAE-AGADIIYLADTVGIMTPEDVAELVRA 174 (237)
T ss_dssp HHHHHHHHHHHH-HT-SEEEEEETTS-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCeEEEeeCccCCcCHHHHHHHHHH
Confidence 467788888877 89999997 57777777766666443
No 450
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=27.77 E-value=1.8e+02 Score=29.83 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=44.2
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
..+.-..|-++-+|+||+++--++=-+.-.-+.|... .++ --..+=.++||++|.++||+-|+-| .|-
T Consensus 64 D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~----~~N---~~gl~~Y~~lid~L~~~GI~P~VTL--~H~ 131 (476)
T PRK09589 64 DFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDEL----EPN---EEGLQFYDDLFDECLKQGIEPVVTL--SHF 131 (476)
T ss_pred cHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCC----CCC---HHHHHHHHHHHHHHHHcCCEEEEEe--cCC
Confidence 3467788899999999999988762221101111100 012 1124568999999999999999866 455
No 451
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=27.76 E-value=52 Score=32.41 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
+.-|...+++++++.||++|+.||+|-+.
T Consensus 181 ~~tG~~~~l~~i~~la~~~~~~li~De~~ 209 (393)
T TIGR01822 181 SMDGVIAPLDEICDLADKYDALVMVDECH 209 (393)
T ss_pred cCCCCcCCHHHHHHHHHHcCCEEEEECCc
Confidence 44566677999999999999999999995
No 452
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=27.69 E-value=1e+02 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
..-|+..+++++++.||++|+-||+|-+..
T Consensus 189 n~tG~~~~l~~i~~l~~~~~~~livDea~~ 218 (410)
T PRK13392 189 SMDGDIAPIEAICDLADRYNALTYVDEVHA 218 (410)
T ss_pred CCCcccccHHHHHHHHHHcCCEEEEECCcc
Confidence 445766779999999999999999998765
No 453
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=27.69 E-value=1.5e+02 Score=28.55 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=26.7
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
++..+.+-+++++++|++.|.+.|.+.... ++. . ..+=+.++.+++.+++-+
T Consensus 176 n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~----a~~-----~-~~~l~~~e~~~~~~~~~~ 227 (318)
T TIGR03470 176 DPEEVAEFFDYLTDLGVDGMTISPGYAYEK----APD-----Q-DHFLGRRQTKKLFREVLS 227 (318)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCccccc----ccc-----c-ccccCHHHHHHHHHHHHh
Confidence 355555666666666666666666543211 110 1 112235677777666554
No 454
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.65 E-value=2.2e+02 Score=27.98 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=38.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+...+.+-.+.++.+++ .|.|.|.++.+ ..+|..++ .+.++++.+.+.++|+.|.+
T Consensus 277 s~e~a~~La~llk~l~~-~VnLIPyn~~~------~~~~~~ps------~e~i~~f~~~l~~~gi~vtv 332 (356)
T PRK14462 277 DLKSAKKLVKLLNGIKA-KVNLILFNPHE------GSKFERPS------LEDMIKFQDYLNSKGLLCTI 332 (356)
T ss_pred CHHHHHHHHHHHhhcCc-EEEEEeCCCCC------CCCCCCCC------HHHHHHHHHHHHHCCCcEEE
Confidence 34455555567788876 89999988542 22334444 77888888889999998854
No 455
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=27.61 E-value=62 Score=30.62 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.+.|+++++.++++|+.||+|+=.+
T Consensus 72 ~~~l~~~i~~l~~~g~~VilD~K~~ 96 (278)
T PRK00125 72 LAQLERTIAYLREAGVLVIADAKRG 96 (278)
T ss_pred hhHHHHHHHHHHHCCCcEEEEeecC
Confidence 5678889999999999999998775
No 456
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=27.61 E-value=51 Score=32.52 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=40.9
Q ss_pred HHHcCCCEEEeCCCCCC-C-C--------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 52 LSNAGITHVWLPPPSQS-V-A--------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 52 lk~lGv~~I~l~Pi~~~-~-~--------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
.+..|++.+++..-.+. . . ..+-...-+..++ ..-|...+++++.+.||++|+.|++|-+
T Consensus 125 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~-n~tG~~~~~~~i~~~~~~~~~~~ivD~a 194 (397)
T TIGR01976 125 AERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAAS-NTLGSIVDLAAITELVHAAGALVVVDAV 194 (397)
T ss_pred HHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCC-CCCCccCCHHHHHHHHHHcCCEEEEehh
Confidence 45678887776321111 0 0 1122333345567 7789888999999999999999999986
No 457
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.61 E-value=3.4e+02 Score=24.95 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=46.7
Q ss_pred eEEEeecCCCCC--CCCCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHH
Q 014447 25 LLFQGFNWESSN--KAGGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQ 102 (424)
Q Consensus 25 v~~~~f~~ds~~--~~~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~ 102 (424)
+.+++|..+... ...++...+++-|++..+.|++.|-++= |.....+. + ...+.|++.|++|.+
T Consensus 69 ~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~--------g~~~~~~~--~----~~~~~l~~ai~~A~~ 134 (247)
T cd07491 69 YVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW--------TIKKPEDN--D----NDINELENAIKEALD 134 (247)
T ss_pred EEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee--------eccccccc--c----cchHHHHHHHHHHHh
Confidence 455777633221 1135678899999999999999998872 11111000 1 135789999999999
Q ss_pred cCCEEEE
Q 014447 103 KGIKCLA 109 (424)
Q Consensus 103 ~Gi~Vil 109 (424)
+|+=|+.
T Consensus 135 ~Gilvva 141 (247)
T cd07491 135 RGILLFC 141 (247)
T ss_pred CCeEEEE
Confidence 9976664
No 458
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=27.55 E-value=73 Score=30.99 Aligned_cols=22 Identities=18% Similarity=0.478 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 014447 90 QADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.++|++|++.||+.||.+++.+
T Consensus 216 ~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 216 DLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 6789999999999999999986
No 459
>PLN02368 alanine transaminase
Probab=27.54 E-value=69 Score=32.08 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 228 s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 228 SEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 48899999999999999999999998764
No 460
>PRK08175 aminotransferase; Validated
Probab=27.48 E-value=63 Score=31.96 Aligned_cols=28 Identities=4% Similarity=0.090 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.|+++|+.||.|-+..+.
T Consensus 182 ~~~~~~~i~~~a~~~~i~ii~De~y~~l 209 (395)
T PRK08175 182 ELEFFEKVVALAKRYDVLVVHDLAYADI 209 (395)
T ss_pred CHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence 4889999999999999999999888654
No 461
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.47 E-value=77 Score=25.02 Aligned_cols=55 Identities=16% Similarity=0.304 Sum_probs=36.6
Q ss_pred HHHcCCCEEEeCCCCC-CCC------CCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 52 LSNAGITHVWLPPPSQ-SVA------PQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 52 lk~lGv~~I~l~Pi~~-~~~------~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
+++-.++.|.+.-+.. +.. ..|..+. +++|---+.+++++|++.|+++|..|++.
T Consensus 58 l~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~----~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 58 LADEDVDAVIIATPPSSHAEIAKKALEAGKHVL----VEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHTTESEEEEESSGGGHHHHHHHHHHTTSEEE----EESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHhhcCCEEEEecCCcchHHHHHHHHHcCCEEE----EEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 3445788888854332 110 2344332 44355568999999999999999998874
No 462
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=27.38 E-value=2.1e+02 Score=28.18 Aligned_cols=68 Identities=10% Similarity=-0.001 Sum_probs=50.1
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------------------CCCC----------CCcccccCCCCCCCCCHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQG----------YMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------------------~~~g----------Y~~~d~~~id~~~~Gt~e 91 (424)
++...++.+..|+++|+..|+ -|+.... +-++ -...|...+|+.+.|+..
T Consensus 201 ~~~~A~~~~~~l~~~~l~~iE-eP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit 279 (368)
T cd03329 201 SRADALRLGRALEELGFFWYE-DPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGIT 279 (368)
T ss_pred CHHHHHHHHHHhhhcCCCeEe-CCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 477788888899999998888 4553210 1111 224667777855579999
Q ss_pred HHHHHHHHHHHcCCEEEE
Q 014447 92 DLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~Vil 109 (424)
+.+++++.|+++|++++.
T Consensus 280 ~~~~ia~~a~~~gi~~~~ 297 (368)
T cd03329 280 GAMKTAHLAEAFGLDVEL 297 (368)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 999999999999999976
No 463
>PLN02656 tyrosine transaminase
Probab=27.37 E-value=63 Score=32.24 Aligned_cols=28 Identities=25% Similarity=0.285 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
.++++++++.|+++|+-||.|-+..+..
T Consensus 188 ~~~~~~i~~~a~~~~~~ii~De~y~~~~ 215 (409)
T PLN02656 188 YQHLKKIAETAEKLKILVIADEVYGHLA 215 (409)
T ss_pred HHHHHHHHHHHHHcCCEEEEehhhhhcc
Confidence 6899999999999999999999998764
No 464
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.35 E-value=1.9e+02 Score=27.32 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHcC
Q 014447 89 SQADLKSLIQAFRQKG 104 (424)
Q Consensus 89 t~edl~~Lv~~aH~~G 104 (424)
|.++++++.+.+.++|
T Consensus 280 ~~~~~~~~~~~~~~~g 295 (295)
T TIGR02494 280 AEEQLLELKEIFESKG 295 (295)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4788888887776655
No 465
>PRK06348 aspartate aminotransferase; Provisional
Probab=27.33 E-value=67 Score=31.66 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
|.+++++|++.|+++|+-||.|-+..+..
T Consensus 180 s~~~~~~l~~~a~~~~~~ii~De~y~~~~ 208 (384)
T PRK06348 180 SKETLEEIAKIAIEYDLFIISDEVYDGFS 208 (384)
T ss_pred CHHHHHHHHHHHHHCCeEEEEecccccce
Confidence 47899999999999999999999987653
No 466
>PLN02417 dihydrodipicolinate synthase
Probab=27.28 E-value=1.8e+02 Score=27.39 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=35.9
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
.....++...+.+++|+++|.+.|++ |+.+. .+++.+..++..+.. .||+
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~P~------------y~~~~------~~~i~~~f~~va~~~-pi~l 130 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHINPY------------YGKTS------QEGLIKHFETVLDMG-PTII 130 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCc------------cCCCC------HHHHHHHHHHHHhhC-CEEE
Confidence 47889999999999999999999975 33333 556666555555555 6653
No 467
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=27.27 E-value=75 Score=30.90 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.|+++|+.||+|-++-+.
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~ 187 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDF 187 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhcc
Confidence 4788999999999999999999998654
No 468
>PRK07582 cystathionine gamma-lyase; Validated
Probab=27.25 E-value=60 Score=31.95 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=38.4
Q ss_pred HHHHcCCCEEEeCCCCCC-CCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQS-VAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~~-~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|++.+++..--.. .....-...-...+. ..-|...+++++++.||++|+.||+|-+.
T Consensus 109 ~l~~~G~~v~~v~~~~~~~~~~~~t~lV~le~p~-NPtg~v~di~~I~~~a~~~g~~lvVD~t~ 171 (366)
T PRK07582 109 YLAPLGVTVREAPTAGMAEAALAGADLVLAETPS-NPGLDVCDLAALAAAAHAAGALLVVDNTT 171 (366)
T ss_pred HHhcCeEEEEEECCCChHHHhccCceEEEEECCC-CCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence 456688887776421100 000111111122344 44577889999999999999999999975
No 469
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=27.23 E-value=65 Score=32.44 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
|++||.++|.+||++|.||-.=- ..|.
T Consensus 58 teaeL~~lVa~A~~a~~kirvVg-~gHS 84 (518)
T KOG4730|consen 58 TEAELVELVAAATEAGKKIRVVG-SGHS 84 (518)
T ss_pred CHHHHHHHHHHHHHcCceEEEec-ccCC
Confidence 78999999999999999987543 4444
No 470
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=27.20 E-value=55 Score=32.53 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=39.0
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++.+|++.+++..--. ..-...-...-...+. ...|...+++++++.||++|+.||+|-+.
T Consensus 120 ~~~~~G~~v~~vd~~d~~~l~~~i~~~tklV~ie~p~-NptG~v~dl~~I~~la~~~gi~livD~t~ 185 (390)
T PRK08133 120 IFARFGIETTFVDLTDLDAWRAAVRPNTKLFFLETPS-NPLTELADIAALAEIAHAAGALLVVDNCF 185 (390)
T ss_pred HHHHcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCC-CCCCCcCCHHHHHHHHHHcCCEEEEECCC
Confidence 45668887777643100 0000111111122345 56788888999999999999999999985
No 471
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.19 E-value=1.3e+02 Score=29.13 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=39.7
Q ss_pred CCcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 014447 39 GGWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLA 109 (424)
Q Consensus 39 ~G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~Vil 109 (424)
+|+|..+++.++.+++.|+..|.+.-+. .... +.+++.++++-++++|+.+.+
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~------------~~g~------N~~ei~~~~~~~~~~gi~~~~ 188 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVI------------LRGQ------NDDEVLDLVEFCRERGLDIAF 188 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEE------------ECCC------CHHHHHHHHHHHHhcCCeEEE
Confidence 6899999999999999998655554321 0011 357899999999999998753
No 472
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=27.03 E-value=53 Score=32.26 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
+..|+.++++++++.|+++|+-||.|-+..
T Consensus 185 ~~~G~~~~~~~l~~la~~~~~~li~De~~~ 214 (397)
T PRK06939 185 SMDGDIAPLPEICDLADKYDALVMVDDSHA 214 (397)
T ss_pred CCCCCcCCHHHHHHHHHHhCCEEEEECccc
Confidence 445777889999999999999999999974
No 473
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=27.02 E-value=46 Score=32.08 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 86 KYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 86 ~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.-|+.++++++++.||++|+.||+|-+.
T Consensus 158 ~~G~~~~~~~i~~l~~~~~~~li~De~~ 185 (360)
T TIGR00858 158 MDGDIAPLPQLVALAERYGAWLMVDDAH 185 (360)
T ss_pred CCCCCcCHHHHHHHHHHcCcEEEEECcc
Confidence 4466678999999999999999999985
No 474
>PLN02721 threonine aldolase
Probab=27.00 E-value=68 Score=30.87 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++++++++.||++|+.|++|-+.
T Consensus 157 ~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEEEchh
Confidence 678999999999999999999753
No 475
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=26.87 E-value=72 Score=32.75 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=24.2
Q ss_pred CCCCCH-HHHHHHHHHHHHcCCEEEEeee
Q 014447 85 SKYGSQ-ADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 85 ~~~Gt~-edl~~Lv~~aH~~Gi~VilD~v 112 (424)
...|.. ++++++++.||++|.-+++|.+
T Consensus 218 n~tG~~~~dl~eI~~~a~~~gal~iVD~a 246 (481)
T PRK04366 218 NTLGLFERNILEIAEIVHEAGGLLYYDGA 246 (481)
T ss_pred CCccccchHHHHHHHHHHHcCCEEEEEec
Confidence 346776 5899999999999999999976
No 476
>PLN02187 rooty/superroot1
Probab=26.84 E-value=70 Score=32.62 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||.|-++.+..
T Consensus 222 s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~ 250 (462)
T PLN02187 222 SHDHLKKVAETARKLGIMVISDEVYDRTI 250 (462)
T ss_pred CHHHHHHHHHHHHHCCCEEEEeccccccc
Confidence 47899999999999999999999998753
No 477
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=26.79 E-value=97 Score=32.23 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 85 SKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 85 ~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
...|..++++++.+.|+++|+.+.+|-+.-
T Consensus 276 t~tGaiDpl~eIa~i~~~~g~~lHVDaA~g 305 (522)
T TIGR03799 276 TETGNIDPLDEMADIAQELGCHFHVDAAWG 305 (522)
T ss_pred cCCCCcCCHHHHHHHHHHcCCeEEEEchhh
Confidence 567888999999999999999999997754
No 478
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=26.76 E-value=65 Score=31.35 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+-||.|-+..+..
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~ 188 (357)
T TIGR03539 160 SVDELRAIVAWARERGAVVASDECYLELG 188 (357)
T ss_pred CHHHHHHHHHHHHHcCeEEEEecchhhhc
Confidence 47899999999999999999999986553
No 479
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=26.62 E-value=55 Score=33.12 Aligned_cols=62 Identities=15% Similarity=0.099 Sum_probs=39.8
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|++.+++-+--. ..-...-...-...+. ...|...|++++.+.||++|+.||+|-+.
T Consensus 123 ~l~~~Gi~v~~vd~~d~~~l~~~i~~~TklV~~e~~~-np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 123 TLRRFGIETTFVKPGDIDGWRAAIRPNTRLLFGETLG-NPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHhhCCeEEEEECCCCHHHHHHhcCCCCeEEEEECCC-cccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 35788998888765200 0000111122223344 55666789999999999999999999774
No 480
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=26.55 E-value=6.3e+02 Score=24.90 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAE 119 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~ 119 (424)
.+.|+++++++|++|-++++= ++|.+..
T Consensus 82 i~~~~~vt~avH~~G~~i~iQ--L~H~Gr~ 109 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQ--LWHAGRK 109 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEE--eccCccc
Confidence 568999999999999999975 5899854
No 481
>PTZ00333 triosephosphate isomerase; Provisional
Probab=26.54 E-value=1.6e+02 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=32.4
Q ss_pred hHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Q 014447 50 PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 50 ~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~edl~~Lv~~aH~~Gi~VilD 110 (424)
.-|+++|++++.|. +.+=- ..|| |.+.+.+-|++|.+.||.+|+=
T Consensus 83 ~mL~d~G~~~viiG---------------HSERR-~~f~Etd~~I~~Kv~~al~~gl~pIlC 128 (255)
T PTZ00333 83 EMLKDLGINWTILG---------------HSERR-QYFGETNEIVAQKVKNALENGLKVILC 128 (255)
T ss_pred HHHHHcCCCEEEEC---------------ccccc-CcCCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 56788888888775 22222 2233 5688999999999999999974
No 482
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.53 E-value=75 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 014447 90 QADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+++++|++.||..||.+++.+
T Consensus 144 ~~~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 144 DDQLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEE
Confidence 6789999999999999999986
No 483
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=26.51 E-value=76 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeecccCCCCC
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVINHRTAER 120 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~NH~~~~~ 120 (424)
.+.|+++++++|++|-++++ -++|+|...
T Consensus 78 i~~~~~lad~vH~~Ga~i~~--QL~H~Gr~~ 106 (362)
T PRK10605 78 IAAWKKITAGVHAEGGHIAV--QLWHTGRIS 106 (362)
T ss_pred HHHHHHHHHHHHhCCCEEEE--eccCCCCCC
Confidence 67899999999999999998 567987653
No 484
>PRK05764 aspartate aminotransferase; Provisional
Probab=26.49 E-value=70 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeeccc
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINH 115 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH 115 (424)
+.++++++++.|+++|+.||+|-+...
T Consensus 182 ~~~~~~~l~~~a~~~~~~ii~De~y~~ 208 (393)
T PRK05764 182 SPEELEAIADVAVEHDIWVLSDEIYEK 208 (393)
T ss_pred CHHHHHHHHHHHHHCCcEEEEeccccc
Confidence 368999999999999999999977643
No 485
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=26.48 E-value=88 Score=25.88 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEeeec
Q 014447 90 QADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
-+||+-|++.|++.|++|++=++|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P 58 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP 58 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHcCCceEEEecC
Confidence 359999999999999999976666
No 486
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=26.45 E-value=1.6e+02 Score=30.24 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=44.1
Q ss_pred CcHHHHHhhhhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 014447 40 GWYNSLKNSIPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMV 112 (424)
Q Consensus 40 G~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v 112 (424)
..+.-..|-++-+|+||+++--++=-+.-.-+.|.. -.++ -...+=.++||++|+++||+-|+-+-
T Consensus 70 d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~----~~~N---~~gl~~Y~~lId~L~~~GI~P~VTL~ 135 (478)
T PRK09593 70 DMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDE----LEPN---EAGLQFYEDIFKECHKYGIEPLVTIT 135 (478)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCC----CCCC---HHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 357778899999999999998876433211111110 0122 11245689999999999999998764
No 487
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.42 E-value=1.5e+02 Score=29.00 Aligned_cols=67 Identities=19% Similarity=0.027 Sum_probs=49.5
Q ss_pred cHHHHHhhhhHHHHcCCCEEEeCCCCCCC-------------------CCCC---------CCcccccCCCCCCCCCHHH
Q 014447 41 WYNSLKNSIPDLSNAGITHVWLPPPSQSV-------------------APQG---------YMPGRLYDLDASKYGSQAD 92 (424)
Q Consensus 41 ~~~gi~~~L~ylk~lGv~~I~l~Pi~~~~-------------------~~~g---------Y~~~d~~~id~~~~Gt~ed 92 (424)
+....++.+..|+++|+..|+= |+.... +-++ -...|...+|+.+.|+..+
T Consensus 198 ~~~~A~~~~~~l~~~~i~~iEe-P~~~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~ 276 (355)
T cd03321 198 TVPEAIERGQALDQEGLTWIEE-PTLQHDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTG 276 (355)
T ss_pred CHHHHHHHHHHHHcCCCCEEEC-CCCCcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHH
Confidence 4677888888899999999985 553311 0010 2345666777667899999
Q ss_pred HHHHHHHHHHcCCEEE
Q 014447 93 LKSLIQAFRQKGIKCL 108 (424)
Q Consensus 93 l~~Lv~~aH~~Gi~Vi 108 (424)
++++++.|+++|++++
T Consensus 277 ~~~ia~~A~~~gi~~~ 292 (355)
T cd03321 277 WLRASALAEQAGIPMS 292 (355)
T ss_pred HHHHHHHHHHcCCeec
Confidence 9999999999999975
No 488
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=26.41 E-value=65 Score=30.90 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=48.4
Q ss_pred cHHHHHhhhhHHHH---cCCCEEEeCCCCC-----------------CCCCC---------CCCcccccCCCCCCCCCHH
Q 014447 41 WYNSLKNSIPDLSN---AGITHVWLPPPSQ-----------------SVAPQ---------GYMPGRLYDLDASKYGSQA 91 (424)
Q Consensus 41 ~~~gi~~~L~ylk~---lGv~~I~l~Pi~~-----------------~~~~~---------gY~~~d~~~id~~~~Gt~e 91 (424)
+....++.+..|.+ +++..|+= |+.. ..+-+ .-...|...+++.+.|+..
T Consensus 166 ~~~~A~~~~~~l~~~~~~~i~~iEq-P~~~~~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~ 244 (307)
T TIGR01927 166 SPDEAQQFLKALDPNLRGRIAFLEE-PLPDADEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPA 244 (307)
T ss_pred CHHHHHHHHHhcccccCCCceEEeC-CCCCHHHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHH
Confidence 46777777888886 67777772 3211 11101 1234566677766789999
Q ss_pred HHHHHHHHHHHcCCEEEEe
Q 014447 92 DLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 92 dl~~Lv~~aH~~Gi~VilD 110 (424)
+.+++++.|+++||++++-
T Consensus 245 ~~~~i~~~a~~~gi~~~~~ 263 (307)
T TIGR01927 245 KLRDLAQKAHRLGLQAVFS 263 (307)
T ss_pred HHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999974
No 489
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=26.37 E-value=83 Score=28.81 Aligned_cols=50 Identities=20% Similarity=0.253 Sum_probs=31.1
Q ss_pred hhHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 49 IPDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 49 L~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
++.+++.|+..+-|=-..+ .|=...|+. +.++|++||++||++|+.+=|=
T Consensus 137 ~~~a~~aG~~gvMlDTa~K----dg~~L~d~~--------~~~~L~~Fv~~ar~~gL~~aLA 186 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTADK----DGGSLFDHL--------SEEELAEFVAQARAHGLMCALA 186 (235)
T ss_pred HHHHHHcCCCEEEEecccC----CCCchhhcC--------CHHHHHHHHHHHHHccchhhcc
Confidence 3455677777666532222 222222222 3779999999999999987553
No 490
>PRK15492 triosephosphate isomerase; Provisional
Probab=26.27 E-value=1.7e+02 Score=27.33 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=31.8
Q ss_pred hHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEe
Q 014447 50 PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYG-SQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 50 ~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~G-t~edl~~Lv~~aH~~Gi~VilD 110 (424)
.-||++|++++.|. +.+=- ..|| |.+...+-|++|-+.||.+|+=
T Consensus 88 ~mLkd~G~~~viiG---------------HSERR-~~f~Etd~~v~~Kv~~a~~~gl~pIvC 133 (260)
T PRK15492 88 LMLKEIGTQLVMIG---------------HSERR-HKFGETDQEENAKVLAALKHDFTTLLC 133 (260)
T ss_pred HHHHHcCCCEEEEC---------------ccccc-cccCcchHHHHHHHHHHHHCCCEEEEE
Confidence 56788888888875 11111 2233 4677888999999999999973
No 491
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=26.12 E-value=57 Score=32.60 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=40.7
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++..|++.+++.+.-. ..-...-...-...+. ...|..-|++++++.||++|+.||+|-+.-
T Consensus 129 ~~~~~G~~v~~vd~~d~~~l~~ai~~~tklV~~esp~-Nptg~v~dl~~I~~la~~~g~~vivD~a~a 195 (403)
T PRK07810 129 ILPRWGVETVFVDGEDLSQWEEALSVPTQAVFFETPS-NPMQSLVDIAAVSELAHAAGAKVVLDNVFA 195 (403)
T ss_pred HHHHcCcEEEEECCCCHHHHHHhcCcCceEEEEECCC-CCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence 35567888777753210 0001111222233455 668888899999999999999999998864
No 492
>PRK09082 methionine aminotransferase; Validated
Probab=26.08 E-value=62 Score=31.93 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHR 116 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~ 116 (424)
+.++++++++.|+++|+.||.|-+..+.
T Consensus 181 ~~~~~~~i~~~a~~~~i~li~De~y~~~ 208 (386)
T PRK09082 181 SAADMRALWQLIAGTDIYVLSDEVYEHI 208 (386)
T ss_pred CHHHHHHHHHHHHHCCEEEEEehhhhhh
Confidence 4699999999999999999999998655
No 493
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=26.07 E-value=67 Score=31.85 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEeeecccCC
Q 014447 89 SQADLKSLIQAFRQKGIKCLADMVINHRT 117 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~v~NH~~ 117 (424)
+.++++++++.|+++|+.||.|-+..+..
T Consensus 186 ~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 214 (401)
T TIGR01264 186 SRQHLEEILAVAERQCLPIIADEIYGDMV 214 (401)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEhhhhhhc
Confidence 36899999999999999999999987664
No 494
>PF13707 RloB: RloB-like protein
Probab=26.07 E-value=1.6e+02 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=38.9
Q ss_pred CcHHHHHhhhhHHHH-----cCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 014447 40 GWYNSLKNSIPDLSN-----AGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLAD 110 (424)
Q Consensus 40 G~~~gi~~~L~ylk~-----lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD 110 (424)
++..++++++....+ .+++.||+. ++.| ..-.+.++|+++++.|+++++.|++-
T Consensus 38 ~~p~~lv~~a~~~~~~~~~~~~~d~v~~V----------------~D~D-~~~~~~~~~~~~~~~a~~~~i~l~~S 96 (183)
T PF13707_consen 38 SDPSSLVEKAKKKRKKKKNDNEYDEVWCV----------------FDRD-QNDFEHEKLEEAIKKAKRNKINLAVS 96 (183)
T ss_pred CCHHHHHHHHHHHHhhhccccCCCEEEEE----------------EeCC-CCcCcHHHHHHHHHhccccCeEEEEe
Confidence 677788887765555 555666543 3344 55677899999999999998888764
No 495
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=25.98 E-value=47 Score=33.83 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHcCCEEEEee
Q 014447 89 SQADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 89 t~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
...+++++++.||++|+.||+|.
T Consensus 230 ~~~dl~~I~~la~~~g~~vivD~ 252 (454)
T TIGR00474 230 EEVSIAELVALGREHGLPVMEDL 252 (454)
T ss_pred CCCCHHHHHHHHHHcCCeEEEEC
Confidence 46789999999999999999995
No 496
>PRK08064 cystathionine beta-lyase; Provisional
Probab=25.96 E-value=64 Score=32.06 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=40.2
Q ss_pred HHHHcCCCEEEeCCCC-C---CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 51 DLSNAGITHVWLPPPS-Q---SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~-~---~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.++..|+..+++...- + ..-...-...-...+. ...|...+++++++.||++|+.||+|-..
T Consensus 112 ~~~~~G~~v~~v~~~d~~~l~~~l~~~tklV~l~~p~-NptG~~~dl~~I~~la~~~g~~vvvD~a~ 177 (390)
T PRK08064 112 VLSRFGIEHTFVDMTNLEEVAQNIKPNTKLFYVETPS-NPLLKVTDIRGVVKLAKAIGCLTFVDNTF 177 (390)
T ss_pred HHHHcCCEEEEECCCCHHHHHHhcCCCceEEEEECCC-CCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence 3566788877764310 0 0001112233234455 66888999999999999999999999764
No 497
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=25.96 E-value=1.1e+02 Score=30.28 Aligned_cols=40 Identities=8% Similarity=-0.015 Sum_probs=28.1
Q ss_pred CCcccccCCCCC--CCCCHHHHHHHHHHHHHcCCE-EEEeeecc
Q 014447 74 YMPGRLYDLDAS--KYGSQADLKSLIQAFRQKGIK-CLADMVIN 114 (424)
Q Consensus 74 Y~~~d~~~id~~--~~Gt~edl~~Lv~~aH~~Gi~-VilD~v~N 114 (424)
|++.-|..|. + +=.+.++-.+-++.|++.||+ |-+++.+.
T Consensus 183 ~~~~~y~~i~-~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~G 225 (366)
T TIGR02351 183 YNEKKYKKHH-LAGKKKDFRYRLNTPERAAKAGMRKIGIGALLG 225 (366)
T ss_pred CCHHHHHhcC-cCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEe
Confidence 4444455565 4 222577778889999999998 78877775
No 498
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=25.89 E-value=1.8e+02 Score=25.94 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCEEEEee
Q 014447 90 QADLKSLIQAFRQKGIKCLADM 111 (424)
Q Consensus 90 ~edl~~Lv~~aH~~Gi~VilD~ 111 (424)
.+++++++++++..|+.+++++
T Consensus 107 ~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 107 DEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHHHHHHHcCCeEEEEE
Confidence 4789999999999999998887
No 499
>PRK05367 glycine dehydrogenase; Provisional
Probab=25.74 E-value=50 Score=37.08 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=41.0
Q ss_pred hHHHHcCCCEEEeCCCCCCCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 014447 50 PDLSNAGITHVWLPPPSQSVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVI 113 (424)
Q Consensus 50 ~ylk~lGv~~I~l~Pi~~~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~ 113 (424)
.+.+..|+..+.+.+--.. ........ ..+. |...|..++++++++.||++|.-+++|..+
T Consensus 184 t~a~~~G~ev~~~~~~~d~-~~~~~~~v-lvq~-p~~~G~i~d~~~i~~~ah~~Gal~~vda~~ 244 (954)
T PRK05367 184 TRAEPLGIEVVVGDAAKAL-DHDDVFGV-LLQY-PGTSGEVRDYTALIAAAHARGALVAVAADL 244 (954)
T ss_pred HHHHhCCCEEEEecCccCC-CcccEEEE-EEec-CCCCeeeccHHHHHHHHHHcCCEEEEEehh
Confidence 3567799988887542111 11111111 1222 478999999999999999999999998755
No 500
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=25.68 E-value=61 Score=32.09 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHcCCCEEEeCCCCC----CCCCCCCCcccccCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 014447 51 DLSNAGITHVWLPPPSQ----SVAPQGYMPGRLYDLDASKYGSQADLKSLIQAFRQKGIKCLADMVIN 114 (424)
Q Consensus 51 ylk~lGv~~I~l~Pi~~----~~~~~gY~~~d~~~id~~~~Gt~edl~~Lv~~aH~~Gi~VilD~v~N 114 (424)
.++..|+...++.+.-. ..-...-...-...+. ...|...+++++++.||++|+.||+|-+.-
T Consensus 108 ~~~~~gi~v~~vd~~d~e~l~~ai~~~t~lV~lesP~-Nptg~~~di~~I~~la~~~gi~vivD~t~a 174 (380)
T PRK06176 108 VLVKNGLSCTIIDTSDLSQIKKAIKPNTKALYLETPS-NPLLKITDLAQCASVAKDHGLLTIVDNTFA 174 (380)
T ss_pred HHHhcCeEEEEcCCCCHHHHHHhcCcCceEEEEECCC-CCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 36778888777644210 0001111222122345 567788889999999999999999997753
Done!