BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014449
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 416 bits (1070), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/380 (53%), Positives = 270/380 (71%), Gaps = 3/380 (0%)
Query: 38 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVV 97
DW+V +RR+IHENPEL +EE TS LIR EL+ +GI Y YPVA TG++ IG+G P V
Sbjct: 28 DWMVKIRRKIHENPELGYEELETSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVA 87
Query: 98 LRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157
LRADMDALP+QE VEWEHKSKI GKMHACGHD H TMLLGAAK++H+ + L+GTV ++F
Sbjct: 88 LRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIF 147
Query: 158 QPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR 217
QPAEEG +GA M +EGAL + EAIFG+H+ IP G AS +G LA VF + G+
Sbjct: 148 QPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGK 207
Query: 218 GGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVLSVTYVRGGTAFNIIPPFVEF 277
GGHAA+P TIDP++ ASS++L+LQQL+SRE DPL S V++V+ V GG AFN+IP +
Sbjct: 208 GGHAAIPQHTIDPVVAASSIVLSLQQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITI 267
Query: 278 GGTLRSLTTEGLYQLQKRLKEVVKQQAAVHSCNAFIDLKEEEHPPYPATVNDDSLHLLVE 337
GGTLR+ T G QLQ+R+KEV+ +QAAVH CNA ++L P P TVN+ L+ +
Sbjct: 268 GGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFK 325
Query: 338 RVGKSLLGPKNVGEAKKVMAGEDFAFYQQLIPGVMLSIGIRNEEKGSIHPPHSPYFFLDE 397
+V + LLG + EA VM EDF+++ + IPG +G+++E G HSP + ++E
Sbjct: 326 KVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDETNGYA-SSHSPLYRINE 384
Query: 398 DVLPIGAALYTNLAETYLNE 417
DVLP GAA++ ++A YL E
Sbjct: 385 DVLPYGAAIHASMAVQYLKE 404
>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
pdb|1YSJ|B Chain B, Crystal Structure Of Bacillus Subtilis Yxep Protein
(Apc1829), A Dinuclear Metal Binding Peptidase From M20
Family
Length = 404
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/374 (39%), Positives = 216/374 (57%), Gaps = 13/374 (3%)
Query: 40 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQI-GSGSRPVVV 97
L++ RR +HE+PEL F+E T+ IRR L++ I P KTG++A+I G PV+
Sbjct: 34 LINXRRDLHEHPELSFQEVETTKKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIA 93
Query: 98 LRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILF 157
+RAD+DALP+QE SK+DG HACGHD HT ++G A L++QR+ +LKGTVR +F
Sbjct: 94 IRADIDALPIQEQTNLPFASKVDGTXHACGHDFHTASIIGTAXLLNQRRAELKGTVRFIF 153
Query: 158 QPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGR 217
QPAEE AGA +++ G L AIFG H +P G+I GP A+ F + ++G+
Sbjct: 154 QPAEEIAAGARKVLEAGVLNGVSAIFGXHNKPDLPVGTIGVKEGPLXASVDRFEIVIKGK 213
Query: 218 GGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVLSVTYVRGGTAFNIIPPFVEF 277
GGHA++P+++IDPI A +I LQ ++SR LQ+ V+S+T V+ GT++N+IP E
Sbjct: 214 GGHASIPNNSIDPIAAAGQIISGLQSVVSRNISSLQNAVVSITRVQAGTSWNVIPDQAEX 273
Query: 278 GGTLRSLTTEGLYQLQKRLKEVVKQQAAVHSCNAFIDLKEEEHPPYPATVNDDSLHLLVE 337
GT+R+ E + + + V + AA + A E + PY +V +D L
Sbjct: 274 EGTVRTFQKEARQAVPEHXRRVAEGIAAGYGAQA-----EFKWFPYLPSVQNDGTFLNAA 328
Query: 338 RVGKSLLGPKNVGEAKKVMAGEDFAFYQQLIPGVMLSIGIRNEEKGSIHPPHSPYFFLDE 397
+ LG + V A++ GEDFA YQ+ IPG + G E+ H P F LDE
Sbjct: 329 SEAAARLGYQTV-HAEQSPGGEDFALYQEKIPGFFVWXGTNGTEEW-----HHPAFTLDE 382
Query: 398 DVLPIGAALYTNLA 411
+ L + + + LA
Sbjct: 383 EALTVASQYFAELA 396
>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|C Chain C, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|D Chain D, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
pdb|4EWT|B Chain B, The Crystal Structure Of A Putative Aminohydrolase From
Methicillin Resistant Staphylococcus Aureus
Length = 392
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 122/394 (30%), Positives = 185/394 (46%), Gaps = 10/394 (2%)
Query: 27 NQVMISAQQDKDW-LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIV 85
NQ +I + K+ ++ +RR +H++PEL F E T+ I + V GI
Sbjct: 2 NQQLIETLKSKEGKMIEIRRYLHQHPELSFHEDETAKYIAEFYKGKDVEVETNVGPRGIK 61
Query: 86 AQIGSGSRP--VVVLRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLIH 143
I SG +P + +RAD DALP+ E S+ G MHACGHD HT +L A+ +
Sbjct: 62 VTIDSG-KPGKTLAIRADFDALPITEDTGLSFASQNKGVMHACGHDAHTAYMLVLAETLA 120
Query: 144 QRKDKLKGTVRILFQPAEE-GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGP 202
+ KD G V ++ QPAEE GA MI+ G L + + G+H+ + TG + G
Sbjct: 121 EMKDSFTGKVVVIHQPAEEVPPGGAKTMIENGVLDGVDHVLGVHVMSTMKTGKVYYRPGY 180
Query: 203 HLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLVLSVTYV 262
+ F +KV+G+GGH + PH D I+ S + ALQ ++SR P ++ V+++
Sbjct: 181 VQTGRAFFKLKVQGKGGHGSSPHMANDAIVAGSYFVTALQTVVSRRLSPFETGVVTIGSF 240
Query: 263 RGGTAFNIIPPFVEFGGTLRSLTTEGLYQLQKRLKEVVKQQAAVHSCNAFIDLKEEEHPP 322
G FN+I VE G +R LT ++K +K + K ++ ++ ++
Sbjct: 241 DGKGQFNVIKDVVEIEGDVRGLTDATKATIEKEIKRLSKGLEDMYGVTCTLEYNDD---- 296
Query: 323 YPATVNDDSLHLLVERVGKSLLGPKNVGEAKKVMAGEDFAFYQQLIPGVMLSIGIRNEEK 382
YPA ND V + K V + EDFA+Y + P + G E
Sbjct: 297 YPALYNDPEFTEYVAKTLKEANLDFGVEMCEPQPPSEDFAYYAKERPSAFIYTGAAV-EN 355
Query: 383 GSIHPPHSPYFFLDEDVLPIGAALYTNLAETYLN 416
G I+P H P F + E L I A + YL
Sbjct: 356 GEIYPHHHPKFNISEKSLLISAEAVGTVVLDYLK 389
>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
pdb|3IO1|B Chain B, Crystal Structure Of Aminobenzoyl-Glutamate Utilization
Protein From Klebsiella Pneumoniae
Length = 445
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 80/154 (51%), Gaps = 9/154 (5%)
Query: 76 AYPVAKTGIVAQIGSGS-RPVVVLRADMDALPLQELVEWEHKSKID-------GKMHACG 127
A+ G+VA + +G P + R D DAL L E + H+ D G HACG
Sbjct: 91 AFEGGFAGVVATLDTGRPGPTLAFRVDXDALDLNEQHDDSHRPHRDHFASCNAGXXHACG 150
Query: 128 HDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHI 187
HD HT + LG A ++ Q +L G ++++FQPAEEG GA + G + D + +HI
Sbjct: 151 HDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAXVAAGVVDDVDYFTAIHI 210
Query: 188 DVGIPTGSIASISGPHLAATSVFNVKVEGRGGHA 221
G+P G++ G + AT+ F+V+ G HA
Sbjct: 211 GTGVPAGTVV-CGGDNFXATTKFDVQFSGVAAHA 243
>pdb|3RAM|A Chain A, Crystal Structure Of Hmra
pdb|3RAM|B Chain B, Crystal Structure Of Hmra
pdb|3RAM|C Chain C, Crystal Structure Of Hmra
pdb|3RAM|D Chain D, Crystal Structure Of Hmra
Length = 394
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 54/336 (16%)
Query: 28 QVMISAQQDKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA--KTGIV 85
Q++ + +K + + +IHE PEL EE S + L + +A TG +
Sbjct: 6 QILDYIETNKYSYIEISHRIHERPELGNEEIFASRTLIDRLKEHDFEIETEIAGHATGFI 65
Query: 86 AQIGSG-SRPVVVLRADMDALPLQELVEWEHKSKIDGKMHACGHD-VHTTMLLGAAKLIH 143
A SG P + A+ DALP G HACGH+ + T +LGA L
Sbjct: 66 ATYDSGLDGPAIGFLAEYDALP--------------GLGHACGHNIIGTASVLGAIGL-K 110
Query: 144 QRKDKLKGTVRILFQPAEEG---GAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASIS 200
Q D++ G V +L PAEEG G+ +K G + + +H P +
Sbjct: 111 QVIDQIGGKVVVLGCPAEEGGENGSAKASYVKAGVIDQIDIALXIH-----PGNE--TYK 163
Query: 201 GPHLAATSVFNVKVEGRGGHAAMPH----STIDPILTASSVILALQQLISREADPLQSLV 256
A V +VK G+ HA+ + +D ++ + + L+Q I ++ + ++
Sbjct: 164 TIDTLAVDVLDVKFYGKSAHASENADEALNALDAXISYFNGVAQLRQHIKKD-QRVHGVI 222
Query: 257 LSVTYVRGGTAFNIIPPFVEFGGTLRSLTTEGLYQLQKRLKEVVKQQAAVHSCNAFIDLK 316
L GG A NIIP + R+ T + L L +++ ++ + A C+
Sbjct: 223 LD-----GGKAANIIPDYTHARFYTRAXTRKELDILTEKVNQIARGAAIQTGCDY----- 272
Query: 317 EEEHPPYPATVN--------DDSLHLLVERVGKSLL 344
E P VN DD E VG++++
Sbjct: 273 --EFGPIQNGVNEFIKTPKLDDLFAKYAEEVGEAVI 306
>pdb|3IC1|A Chain A, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3IC1|B Chain B, Crystal Structure Of Zinc-Bound Succinyl-Diaminopimelate
Desuccinylase From Haemophilus Influenzae
pdb|3ISZ|A Chain A, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
pdb|3ISZ|B Chain B, Crystal Structure Of Mono-zinc Form Of
Succinyl-diaminopimelate Desuccinylase From Haemophilus
Influenzae
Length = 377
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 124/289 (42%), Gaps = 37/289 (12%)
Query: 37 KDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY-PVAKT-GIVAQIGSGSRP 94
K+ +VS+ + + P + + +I L+KLG + P T + A+ G+ S P
Sbjct: 2 KEKVVSLAQDLIRRPSISPNDEGCQQIIAERLEKLGFQIEWMPFNDTLNLWAKHGT-SEP 60
Query: 95 VVVLRADMDALPLQELVEWEH----KSKIDGKMHACGH-DVHTTM--LLGAAKLIHQRKD 147
V+ D +P + +W IDG ++ G D+ ++ ++ AA+ +
Sbjct: 61 VIAFAGHTDVVPTGDENQWSSPPFSAEIIDGMLYGRGAADMKGSLAAMIVAAEEYVKANP 120
Query: 148 KLKGTVRILFQPAEEGGA--GAFHMIKEGALGDSEAIFGMHIDVGIPTGS--IASISGPH 203
KGT+ +L EE A G H+++ D + + M VG P+ + + +
Sbjct: 121 NHKGTIALLITSDEEATAKDGTIHVVETLMARDEKITYCM---VGEPSSAKNLGDVVKNG 177
Query: 204 LAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADPLQSLV----LSV 259
+ N+ ++G GH A PH +PI A+ L LQ+L + + D L +
Sbjct: 178 RRGSITGNLYIQGIQGHVAYPHLAENPIHKAA---LFLQELTTYQWDKGNEFFPPTSLQI 234
Query: 260 TYVRGGTAFNIIPP---FVEFGGTLRSLTTEGLYQLQKRLKEVVKQQAA 305
+ GT N + P +++F LR T + E++KQ+ A
Sbjct: 235 ANIHAGTGSNNVIPAELYIQF--NLRYCT--------EVTDEIIKQKVA 273
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 32/230 (13%)
Query: 94 PVVVLRADMDALPLQELVEWE----HKSKIDGKMHACGH-DVHTTM--LLGAAKLIHQRK 146
PVV D +P + +W+ ++ DG+++ G D T++ + A + +
Sbjct: 63 PVVCFAGHTDVVPTGPVEKWDSPPFEPAERDGRLYGRGAADXKTSIACFVTACERFVAKH 122
Query: 147 DKLKGTVRILFQPAEEGGA------------GAFHMIKEGALGDSEAIFGMHIDVGIPTG 194
+G++ +L EEG A +I +G+ A+ + I G
Sbjct: 123 PNHQGSIALLITSDEEGDALDGTTKVVDVLKARDELIDYCIVGEPTAV--DKLGDXIKNG 180
Query: 195 SIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP-LQ 253
S+SG N+ V+G+ GH A PH I+P+ T + +L L Q + E +
Sbjct: 181 RRGSLSG---------NLTVKGKQGHIAYPHLAINPVHTFAPALLELTQEVWDEGNEYFP 231
Query: 254 SLVLSVTYVRGGT-AFNIIPPFVEFGGTLRSLTTEGLYQLQKRLKEVVKQ 302
++ + GGT A N+IP + R T L++R+ ++ +
Sbjct: 232 PTSFQISNINGGTGATNVIPGELNVKFNFRFSTESTEAGLKQRVHAILDK 281
>pdb|1CG2|A Chain A, Carboxypeptidase G2
pdb|1CG2|B Chain B, Carboxypeptidase G2
pdb|1CG2|C Chain C, Carboxypeptidase G2
pdb|1CG2|D Chain D, Carboxypeptidase G2
Length = 393
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 12/166 (7%)
Query: 140 KLIHQRKDKLKGTVRILFQPAEEGGA-GAFHMIKEGALGDSEAIFGMHIDVGIPTGSIAS 198
KL+ + + GT+ +LF EE G+ G+ +I+E EA ++ PT +
Sbjct: 132 KLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQE------EAKLADYVLSFEPTSAGDE 185
Query: 199 ISGPHLAATSVFNVKVEGRGGHA-AMPHSTIDPILTASSVILALQQLISREADPLQSLVL 257
+ + V + G+ HA A P ++ ++ AS ++L + D ++L
Sbjct: 186 KLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNI----DDKAKNLRF 241
Query: 258 SVTYVRGGTAFNIIPPFVEFGGTLRSLTTEGLYQLQKRLKEVVKQQ 303
+ T + G NIIP +R E K L+E +Q+
Sbjct: 242 NWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQK 287
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 52/136 (38%), Gaps = 9/136 (6%)
Query: 189 VGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISRE 248
VG PT +I+ L V +V G+ GHAA + + +E
Sbjct: 160 VGEPTEXQPAIAEKGLX---VLDVTATGKAGHAARDEGDNAIYKVLNDIAWFRDYRFEKE 216
Query: 249 ADPLQSLVLSVTYVRGGTAFNIIPPFVEFGGTLRSLTTEGLYQLQKRLKEVVKQQAAVHS 308
+ L + SVT + GT N++P F +RS LY + E+ K A
Sbjct: 217 SPLLGPVKXSVTVINAGTQHNVVPDKCTFVVDIRS---NELYSNEDLFAEIRKHIACDAK 273
Query: 309 CNAF---IDLKEEEHP 321
+F +E+HP
Sbjct: 274 ARSFRLNSSRIDEKHP 289
>pdb|1FNO|A Chain A, Peptidase T (Tripeptidase)
Length = 417
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 151 GTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVF 210
G +++ F P EE G GA H D EA FG + G + + + A SV
Sbjct: 163 GDIKVAFTPDEEVGKGAKHF-------DVEA-FGAQWAYTVDGGGVGELEFENFNAASV- 213
Query: 211 NVKVEGRGGH 220
N+K+ G H
Sbjct: 214 NIKIVGNNVH 223
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 23/129 (17%)
Query: 93 RPVVVLRADMDALPLQELVEWEHKSKIDG--KMHACGHDVHTTMLLGAAKLIHQR----- 145
RPVV++ A + A P+Q ++ K G ++AC T A+LI Q+
Sbjct: 115 RPVVLISAGVGATPMQAILHTLAKQNKSGVTYLYACNSAKEHTFAQETAQLIAQQGWMQQ 174
Query: 146 --------KDKLKGTVRI--LFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGS 195
D L+G +++ L P E+G F++ G +G + + + +G+
Sbjct: 175 VWYRDESADDVLQGEMQLAELILPIEDGD---FYLC--GPIGFMQYVVKQLLALGVDKAR 229
Query: 196 I-ASISGPH 203
I + GPH
Sbjct: 230 IHYEVFGPH 238
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 330 DSLHLLVERVGKSLLGPKNVGEAKKVMAGEDFAFYQQL 367
D L LL R+G+ L+G K++GE + E AF+ L
Sbjct: 126 DYLRLLFARIGR-LVGGKHIGEVTAMSVTEALAFFDGL 162
>pdb|1VIX|A Chain A, Crystal Structure Of A Putative Peptidase T
pdb|1VIX|B Chain B, Crystal Structure Of A Putative Peptidase T
Length = 420
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 120 DGKMHACGHDVHTTMLLGAAKLIHQRKDKLKGTVRILFQPAEEGGAGAFHMIKEGALGDS 179
DGK D + A + Q+K G +R+ F P EE G GA H D
Sbjct: 134 DGKTLLGADDKAGIAEIMTALAVLQQKKIPHGDIRVAFTPDEEVGKGAKHF-------DV 186
Query: 180 EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGH 220
+A F + G + + + A SV N+K+ G H
Sbjct: 187 DA-FDARWAYTVDGGGVGELEFENFNAASV-NIKIVGNNVH 225
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,987,825
Number of Sequences: 62578
Number of extensions: 489614
Number of successful extensions: 1173
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1153
Number of HSP's gapped (non-prelim): 21
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)