Query 014450
Match_columns 424
No_of_seqs 393 out of 3576
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:14:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 2.6E-92 5.6E-97 699.8 34.7 364 55-424 1-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 1.4E-90 3.1E-95 694.7 34.5 367 54-424 19-388 (390)
3 TIGR00092 GTP-binding protein 100.0 2.8E-89 6.1E-94 678.1 31.4 364 55-424 1-368 (368)
4 COG0012 Predicted GTPase, prob 100.0 6.2E-89 1.3E-93 665.2 26.0 367 55-424 1-372 (372)
5 KOG1491 Predicted GTP-binding 100.0 1.1E-84 2.3E-89 620.9 27.5 368 54-424 18-391 (391)
6 PRK09602 translation-associate 100.0 1.1E-60 2.4E-65 483.7 29.0 339 57-422 2-394 (396)
7 cd01900 YchF YchF subfamily. 100.0 2.4E-53 5.2E-58 409.5 23.2 274 59-338 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 2.1E-46 4.6E-51 357.0 14.3 289 55-421 62-363 (365)
9 PF06071 YchF-GTPase_C: Protei 100.0 3.4E-42 7.3E-47 267.6 6.8 84 340-423 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 2.6E-41 5.6E-46 260.8 6.8 83 340-422 1-83 (83)
11 KOG1486 GTP-binding protein DR 100.0 7.1E-36 1.5E-40 275.1 9.6 287 55-421 61-362 (364)
12 cd01899 Ygr210 Ygr210 subfamil 100.0 1.1E-34 2.3E-39 286.2 17.7 244 59-309 1-260 (318)
13 COG1159 Era GTPase [General fu 100.0 5.2E-30 1.1E-34 244.1 13.9 195 56-273 6-221 (298)
14 KOG1487 GTP-binding protein DR 100.0 1.6E-30 3.5E-35 240.7 6.2 284 57-421 60-356 (358)
15 COG2262 HflX GTPases [General 99.9 2E-28 4.4E-33 241.6 6.6 206 1-233 118-358 (411)
16 TIGR00436 era GTP-binding prot 99.9 5.1E-24 1.1E-28 206.7 15.1 195 58-273 2-213 (270)
17 PRK11058 GTPase HflX; Provisio 99.9 6.1E-25 1.3E-29 225.1 7.2 205 1-232 123-363 (426)
18 PRK15494 era GTPase Era; Provi 99.9 8.8E-23 1.9E-27 204.1 14.5 197 56-273 52-265 (339)
19 PRK12296 obgE GTPase CgtA; Rev 99.9 1.1E-22 2.5E-27 210.0 14.3 171 56-307 159-330 (500)
20 PRK12298 obgE GTPase CgtA; Rev 99.9 3E-22 6.4E-27 203.2 13.8 174 57-250 160-358 (390)
21 COG0536 Obg Predicted GTPase [ 99.9 9.8E-23 2.1E-27 196.7 8.9 154 56-233 159-335 (369)
22 TIGR03156 GTP_HflX GTP-binding 99.9 5.7E-23 1.2E-27 206.0 6.9 203 1-229 115-350 (351)
23 PRK00089 era GTPase Era; Revie 99.9 2.5E-21 5.4E-26 189.8 15.3 196 56-272 5-219 (292)
24 cd01896 DRG The developmentall 99.9 1.9E-21 4.1E-26 184.8 13.5 223 58-346 2-233 (233)
25 KOG1489 Predicted GTP-binding 99.9 4.1E-22 8.9E-27 190.2 8.2 108 56-187 196-303 (366)
26 cd04938 TGS_Obg-like TGS_Obg-l 99.8 1.6E-21 3.5E-26 152.1 7.1 65 340-422 1-76 (76)
27 KOG1423 Ras-like GTPase ERA [C 99.8 5.8E-21 1.3E-25 181.4 12.0 199 53-273 69-320 (379)
28 COG0486 ThdF Predicted GTPase 99.8 1.9E-21 4.1E-26 195.5 9.2 168 42-233 203-378 (454)
29 PRK12299 obgE GTPase CgtA; Rev 99.8 4.2E-20 9.2E-25 184.0 16.8 91 56-163 158-248 (335)
30 PRK12297 obgE GTPase CgtA; Rev 99.8 2E-20 4.3E-25 191.0 11.9 159 57-235 159-331 (424)
31 PF02421 FeoB_N: Ferrous iron 99.8 1.1E-20 2.3E-25 167.7 7.5 147 57-226 1-156 (156)
32 COG1160 Predicted GTPases [Gen 99.8 1.2E-20 2.6E-25 189.3 6.4 154 57-231 4-165 (444)
33 TIGR02729 Obg_CgtA Obg family 99.8 1.6E-19 3.4E-24 179.7 14.1 91 56-163 157-247 (329)
34 PRK05291 trmE tRNA modificatio 99.7 1.1E-17 2.4E-22 173.2 8.8 163 49-232 208-371 (449)
35 cd01898 Obg Obg subfamily. Th 99.7 1.3E-17 2.7E-22 149.2 7.0 153 58-230 2-170 (170)
36 cd01666 TGS_DRG_C TGS_DRG_C: 99.7 3.9E-17 8.4E-22 126.7 6.3 70 340-421 1-74 (75)
37 COG1160 Predicted GTPases [Gen 99.7 2.7E-16 5.8E-21 158.1 13.7 153 55-232 177-352 (444)
38 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-16 2.4E-21 135.1 9.3 88 58-162 1-90 (116)
39 KOG0410 Predicted GTP binding 99.7 3.3E-17 7.3E-22 156.9 6.7 146 2-166 106-272 (410)
40 cd01886 EF-G Elongation factor 99.6 1.8E-16 3.9E-21 153.7 7.5 225 58-346 1-248 (270)
41 COG0370 FeoB Fe2+ transport sy 99.6 5.1E-16 1.1E-20 162.5 10.4 166 56-244 3-177 (653)
42 cd01881 Obg_like The Obg-like 99.6 1.7E-16 3.8E-21 142.3 5.5 86 61-164 1-87 (176)
43 COG1084 Predicted GTPase [Gene 99.6 5.5E-16 1.2E-20 149.6 8.4 93 55-165 167-261 (346)
44 KOG1191 Mitochondrial GTPase [ 99.6 6.5E-16 1.4E-20 155.4 8.8 97 48-161 260-358 (531)
45 cd01669 TGS_Ygr210_C TGS_Ygr21 99.6 7.3E-16 1.6E-20 120.1 6.6 65 340-421 1-75 (76)
46 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.3E-16 2E-20 158.3 8.3 157 51-230 198-359 (442)
47 cd01878 HflX HflX subfamily. 99.6 1.4E-15 3E-20 141.0 7.8 158 51-230 36-204 (204)
48 cd01897 NOG NOG1 is a nucleola 99.6 3.5E-15 7.5E-20 133.2 9.0 153 57-230 1-167 (168)
49 cd04164 trmE TrmE (MnmE, ThdF, 99.6 4.1E-15 8.9E-20 130.4 8.1 154 56-230 1-156 (157)
50 TIGR03594 GTPase_EngA ribosome 99.6 4.9E-15 1.1E-19 152.9 8.4 154 58-232 1-161 (429)
51 PRK03003 GTP-binding protein D 99.6 3.2E-15 7E-20 156.1 7.0 156 56-232 38-200 (472)
52 cd04170 EF-G_bact Elongation f 99.5 9E-15 2E-19 141.8 8.1 226 58-347 1-247 (268)
53 PRK03003 GTP-binding protein D 99.5 1.4E-14 3.1E-19 151.3 9.0 157 55-232 210-383 (472)
54 PRK09554 feoB ferrous iron tra 99.5 3.8E-14 8.2E-19 154.9 12.2 154 56-232 3-169 (772)
55 PRK09518 bifunctional cytidyla 99.5 1.1E-14 2.4E-19 159.1 7.6 157 55-232 274-437 (712)
56 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 9.7E-14 2.1E-18 128.2 11.9 90 57-163 1-95 (196)
57 PRK00093 GTP-binding protein D 99.5 1.5E-14 3.3E-19 149.5 6.8 153 57-230 2-161 (435)
58 cd04163 Era Era subfamily. Er 99.5 4E-14 8.6E-19 124.6 8.5 92 56-164 3-95 (168)
59 cd04168 TetM_like Tet(M)-like 99.5 7.9E-13 1.7E-17 126.0 17.3 50 297-346 166-215 (237)
60 cd01894 EngA1 EngA1 subfamily. 99.5 2.4E-14 5.1E-19 125.7 6.0 149 60-229 1-156 (157)
61 cd01879 FeoB Ferrous iron tran 99.5 3.4E-14 7.4E-19 125.1 6.8 147 61-230 1-156 (158)
62 cd01861 Rab6 Rab6 subfamily. 99.5 3.5E-14 7.6E-19 125.7 6.6 147 57-229 1-160 (161)
63 TIGR03594 GTPase_EngA ribosome 99.5 2.7E-13 5.8E-18 139.9 14.0 157 55-232 171-345 (429)
64 PRK00093 GTP-binding protein D 99.5 2.9E-13 6.2E-18 140.0 13.9 157 55-232 172-345 (435)
65 PRK09518 bifunctional cytidyla 99.5 3E-13 6.5E-18 147.9 13.8 156 56-232 450-622 (712)
66 cd01895 EngA2 EngA2 subfamily. 99.5 1.1E-12 2.5E-17 116.5 14.1 93 56-165 2-98 (174)
67 cd04171 SelB SelB subfamily. 99.5 1.7E-13 3.7E-18 121.2 8.7 84 57-163 1-86 (164)
68 cd04142 RRP22 RRP22 subfamily. 99.5 1.4E-13 3E-18 127.6 7.9 155 57-230 1-173 (198)
69 cd01868 Rab11_like Rab11-like. 99.5 2.5E-12 5.4E-17 114.5 15.6 83 57-162 4-86 (165)
70 cd04169 RF3 RF3 subfamily. Pe 99.4 2.2E-13 4.8E-18 132.0 8.4 232 57-345 3-244 (267)
71 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 2E-13 4.4E-18 121.8 6.5 148 57-230 3-163 (166)
72 PRK04213 GTP-binding protein; 99.4 4E-13 8.7E-18 124.1 8.6 151 55-232 8-193 (201)
73 cd04112 Rab26 Rab26 subfamily. 99.4 4.3E-13 9.2E-18 123.2 8.0 155 57-237 1-169 (191)
74 cd04109 Rab28 Rab28 subfamily. 99.4 2.2E-13 4.8E-18 127.6 5.9 150 57-231 1-166 (215)
75 cd01866 Rab2 Rab2 subfamily. 99.4 2.4E-13 5.1E-18 122.0 5.2 150 56-231 4-166 (168)
76 cd04124 RabL2 RabL2 subfamily. 99.4 3.7E-13 8E-18 120.0 6.3 149 57-231 1-158 (161)
77 cd01865 Rab3 Rab3 subfamily. 99.4 2.3E-13 4.9E-18 121.7 4.9 149 57-231 2-163 (165)
78 cd04119 RJL RJL (RabJ-Like) su 99.4 6.3E-13 1.4E-17 117.9 7.6 148 57-230 1-166 (168)
79 cd04158 ARD1 ARD1 subfamily. 99.4 3.4E-13 7.3E-18 121.3 5.7 148 58-236 1-166 (169)
80 cd04160 Arfrp1 Arfrp1 subfamil 99.4 2E-13 4.2E-18 121.8 4.1 84 58-165 1-87 (167)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.7E-11 3.6E-16 108.1 16.3 82 57-162 2-83 (162)
82 COG0218 Predicted GTPase [Gene 99.4 3E-12 6.5E-17 116.6 11.4 91 55-165 23-120 (200)
83 TIGR00484 EF-G translation elo 99.4 6.2E-13 1.3E-17 145.0 8.2 226 56-346 10-259 (689)
84 cd04145 M_R_Ras_like M-Ras/R-R 99.4 5E-13 1.1E-17 118.5 6.0 147 57-230 3-163 (164)
85 cd01867 Rab8_Rab10_Rab13_like 99.4 5.1E-13 1.1E-17 119.6 6.0 149 56-230 3-164 (167)
86 smart00175 RAB Rab subfamily o 99.4 9.6E-13 2.1E-17 116.5 7.1 149 57-231 1-162 (164)
87 cd01862 Rab7 Rab7 subfamily. 99.4 9.1E-13 2E-17 117.8 7.0 149 57-231 1-167 (172)
88 cd01863 Rab18 Rab18 subfamily. 99.4 2.5E-11 5.4E-16 107.4 16.2 83 57-162 1-83 (161)
89 cd01864 Rab19 Rab19 subfamily. 99.4 7.4E-13 1.6E-17 118.1 6.2 148 56-229 3-164 (165)
90 PRK00454 engB GTP-binding prot 99.4 1.1E-11 2.4E-16 113.6 13.7 155 54-232 22-195 (196)
91 TIGR00437 feoB ferrous iron tr 99.4 1.2E-12 2.7E-17 139.8 8.4 145 63-230 1-154 (591)
92 cd04107 Rab32_Rab38 Rab38/Rab3 99.3 1.5E-12 3.2E-17 120.6 7.5 150 57-232 1-169 (201)
93 cd01890 LepA LepA subfamily. 99.3 1.3E-12 2.8E-17 117.9 6.8 152 58-231 2-177 (179)
94 cd04136 Rap_like Rap-like subf 99.3 1.4E-12 3.1E-17 115.5 6.9 147 57-230 2-162 (163)
95 PRK15467 ethanolamine utilizat 99.3 1.2E-12 2.5E-17 117.0 6.3 138 58-232 3-148 (158)
96 cd04175 Rap1 Rap1 subgroup. T 99.3 1.9E-12 4.1E-17 115.3 7.2 147 57-230 2-162 (164)
97 cd04113 Rab4 Rab4 subfamily. 99.3 1.1E-12 2.5E-17 116.2 5.7 147 57-229 1-160 (161)
98 cd00881 GTP_translation_factor 99.3 4.4E-12 9.6E-17 114.8 9.3 83 58-164 1-98 (189)
99 cd04122 Rab14 Rab14 subfamily. 99.3 1.3E-12 2.8E-17 116.8 5.5 147 57-230 3-163 (166)
100 smart00173 RAS Ras subfamily o 99.3 2.2E-12 4.8E-17 114.6 6.8 148 57-231 1-162 (164)
101 COG3596 Predicted GTPase [Gene 99.3 5.5E-12 1.2E-16 119.5 9.3 96 53-165 36-131 (296)
102 cd04106 Rab23_lke Rab23-like s 99.3 2.5E-12 5.3E-17 113.9 6.7 148 57-228 1-160 (162)
103 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 2E-11 4.3E-16 108.6 12.2 86 57-164 1-86 (168)
104 cd01860 Rab5_related Rab5-rela 99.3 2.3E-12 5E-17 114.3 6.1 148 57-230 2-162 (163)
105 smart00178 SAR Sar1p-like memb 99.3 1.5E-12 3.2E-17 119.0 5.0 82 56-165 17-98 (184)
106 cd04144 Ras2 Ras2 subfamily. 99.3 3.2E-12 6.9E-17 117.3 7.1 147 58-231 1-163 (190)
107 cd04154 Arl2 Arl2 subfamily. 99.3 1.5E-12 3.3E-17 117.3 4.8 142 55-227 13-171 (173)
108 cd00880 Era_like Era (E. coli 99.3 1.4E-11 3.1E-16 106.8 10.6 90 61-166 1-90 (163)
109 PLN03118 Rab family protein; P 99.3 4.1E-12 8.9E-17 118.6 7.4 153 55-234 13-180 (211)
110 KOG1490 GTP-binding protein CR 99.3 5.7E-12 1.2E-16 127.2 8.8 174 52-317 164-341 (620)
111 cd04157 Arl6 Arl6 subfamily. 99.3 1.9E-12 4.1E-17 114.5 4.7 141 58-227 1-160 (162)
112 cd04114 Rab30 Rab30 subfamily. 99.3 4.1E-12 8.9E-17 113.4 6.9 149 56-230 7-168 (169)
113 cd01889 SelB_euk SelB subfamil 99.3 1.2E-11 2.6E-16 113.7 9.8 98 57-164 1-104 (192)
114 cd04127 Rab27A Rab27a subfamil 99.3 6.1E-12 1.3E-16 113.7 7.7 159 56-230 4-176 (180)
115 cd00154 Rab Rab family. Rab G 99.3 2.8E-12 6.1E-17 111.9 5.1 86 57-165 1-86 (159)
116 cd04176 Rap2 Rap2 subgroup. T 99.3 6.3E-12 1.4E-16 111.6 7.3 147 57-230 2-162 (163)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.3 3.6E-12 7.7E-17 112.8 5.7 140 58-227 1-158 (160)
118 cd04110 Rab35 Rab35 subfamily. 99.3 5.7E-12 1.2E-16 116.6 7.1 151 55-231 5-167 (199)
119 cd04108 Rab36_Rab34 Rab34/Rab3 99.3 6E-12 1.3E-16 113.5 7.0 148 58-231 2-165 (170)
120 cd04116 Rab9 Rab9 subfamily. 99.3 5.2E-12 1.1E-16 113.1 6.4 148 56-229 5-169 (170)
121 PRK12739 elongation factor G; 99.3 5E-12 1.1E-16 137.9 7.2 85 56-164 8-109 (691)
122 cd04123 Rab21 Rab21 subfamily. 99.3 6.6E-12 1.4E-16 110.6 6.7 148 57-230 1-161 (162)
123 cd04166 CysN_ATPS CysN_ATPS su 99.3 7.1E-12 1.5E-16 117.0 6.8 82 58-163 1-112 (208)
124 cd01892 Miro2 Miro2 subfamily. 99.3 8.4E-12 1.8E-16 112.4 7.0 149 56-230 4-165 (169)
125 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.3 1.3E-11 2.8E-16 112.7 8.2 150 56-231 3-170 (183)
126 cd00877 Ran Ran (Ras-related n 99.3 3.7E-12 8E-17 114.3 4.4 150 57-232 1-160 (166)
127 PTZ00369 Ras-like protein; Pro 99.3 5.9E-12 1.3E-16 115.4 5.7 150 56-232 5-168 (189)
128 cd04147 Ras_dva Ras-dva subfam 99.3 5.4E-12 1.2E-16 116.6 5.4 154 58-238 1-170 (198)
129 TIGR00231 small_GTP small GTP- 99.3 4.8E-12 1E-16 109.7 4.8 89 57-161 2-90 (161)
130 cd04101 RabL4 RabL4 (Rab-like4 99.3 1E-11 2.2E-16 110.3 6.9 150 57-230 1-163 (164)
131 cd04151 Arl1 Arl1 subfamily. 99.3 3.2E-12 6.9E-17 113.3 3.7 80 58-165 1-80 (158)
132 cd00876 Ras Ras family. The R 99.3 6.9E-12 1.5E-16 110.3 5.8 145 58-229 1-159 (160)
133 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.3 3.6E-12 7.7E-17 115.3 4.0 83 56-166 15-97 (174)
134 PRK00007 elongation factor G; 99.2 9.5E-12 2.1E-16 135.7 7.7 225 56-345 10-259 (693)
135 PLN03110 Rab GTPase; Provision 99.2 1.2E-11 2.5E-16 116.2 7.3 152 55-232 11-175 (216)
136 cd04140 ARHI_like ARHI subfami 99.2 3.4E-10 7.4E-15 101.0 16.4 82 57-162 2-83 (165)
137 cd04178 Nucleostemin_like Nucl 99.2 1.2E-11 2.6E-16 112.1 6.9 58 54-131 115-172 (172)
138 cd04118 Rab24 Rab24 subfamily. 99.2 7.9E-12 1.7E-16 114.6 5.7 148 57-230 1-165 (193)
139 cd00878 Arf_Arl Arf (ADP-ribos 99.2 7.5E-12 1.6E-16 110.6 5.3 140 58-228 1-157 (158)
140 cd04149 Arf6 Arf6 subfamily. 99.2 1.3E-11 2.9E-16 111.0 6.9 141 56-227 9-166 (168)
141 cd00879 Sar1 Sar1 subfamily. 99.2 8.5E-12 1.8E-16 114.0 5.6 82 56-165 19-100 (190)
142 TIGR03598 GTPase_YsxC ribosome 99.2 2E-11 4.3E-16 110.9 7.9 89 54-162 16-111 (179)
143 PLN00223 ADP-ribosylation fact 99.2 8.3E-12 1.8E-16 113.9 5.4 145 56-231 17-178 (181)
144 cd04155 Arl3 Arl3 subfamily. 99.2 8.6E-12 1.9E-16 111.9 5.4 81 56-164 14-94 (173)
145 cd04117 Rab15 Rab15 subfamily. 99.2 9.3E-12 2E-16 111.0 5.5 147 57-229 1-160 (161)
146 cd04146 RERG_RasL11_like RERG/ 99.2 1E-11 2.2E-16 110.7 5.7 147 58-230 1-163 (165)
147 cd04139 RalA_RalB RalA/RalB su 99.2 1.2E-11 2.5E-16 109.4 6.0 148 57-231 1-162 (164)
148 cd04120 Rab12 Rab12 subfamily. 99.2 1.8E-11 3.8E-16 113.9 7.3 149 57-231 1-163 (202)
149 cd01853 Toc34_like Toc34-like 99.2 3.1E-11 6.7E-16 115.7 9.1 93 52-161 27-124 (249)
150 cd04111 Rab39 Rab39 subfamily. 99.2 1.5E-11 3.2E-16 115.1 6.7 151 56-231 2-166 (211)
151 cd04125 RabA_like RabA-like su 99.2 1.7E-11 3.6E-16 112.1 6.8 149 57-231 1-162 (188)
152 cd04177 RSR1 RSR1 subgroup. R 99.2 7.6E-12 1.6E-16 112.1 4.4 147 57-230 2-163 (168)
153 PTZ00133 ADP-ribosylation fact 99.2 1.2E-11 2.7E-16 112.9 5.6 145 56-231 17-178 (182)
154 smart00177 ARF ARF-like small 99.2 1.4E-11 3E-16 111.6 5.9 144 56-230 13-173 (175)
155 cd04128 Spg1 Spg1p. Spg1p (se 99.2 2.8E-11 6E-16 110.6 7.6 149 57-232 1-167 (182)
156 cd04150 Arf1_5_like Arf1-Arf5- 99.2 1.4E-11 3E-16 109.8 5.3 82 57-166 1-82 (159)
157 PLN03108 Rab family protein; P 99.2 1.3E-11 2.8E-16 115.3 5.4 149 56-230 6-167 (210)
158 cd04115 Rab33B_Rab33A Rab33B/R 99.2 3.6E-11 7.8E-16 108.0 7.9 149 57-230 3-168 (170)
159 cd04132 Rho4_like Rho4-like su 99.2 2.4E-11 5.2E-16 110.7 6.7 149 57-231 1-167 (187)
160 cd04121 Rab40 Rab40 subfamily. 99.2 2.3E-11 4.9E-16 112.0 6.5 150 55-231 5-167 (189)
161 cd01891 TypA_BipA TypA (tyrosi 99.2 2E-10 4.4E-15 105.7 12.8 84 57-164 3-101 (194)
162 cd04159 Arl10_like Arl10-like 99.2 1.3E-11 2.9E-16 107.7 4.4 81 58-165 1-81 (159)
163 cd00157 Rho Rho (Ras homology) 99.2 3E-11 6.5E-16 107.8 6.7 86 57-166 1-86 (171)
164 TIGR02528 EutP ethanolamine ut 99.2 2.7E-11 5.8E-16 105.3 5.7 131 58-226 2-140 (142)
165 PRK09866 hypothetical protein; 99.2 8E-11 1.7E-15 123.5 10.1 39 54-92 67-105 (741)
166 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.2 1.8E-11 3.9E-16 110.1 4.5 150 57-232 23-186 (221)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.2 3.6E-10 7.8E-15 101.2 13.0 79 58-163 1-79 (164)
168 cd04143 Rhes_like Rhes_like su 99.2 4.2E-11 9.2E-16 114.8 7.2 147 57-230 1-170 (247)
169 cd01884 EF_Tu EF-Tu subfamily. 99.2 1.8E-10 3.9E-15 106.6 11.1 84 57-164 3-101 (195)
170 KOG0092 GTPase Rab5/YPT51 and 99.2 1.6E-11 3.4E-16 110.3 3.7 153 56-234 5-170 (200)
171 cd04148 RGK RGK subfamily. Th 99.2 1E-09 2.2E-14 103.4 16.1 82 57-163 1-84 (221)
172 cd04137 RheB Rheb (Ras Homolog 99.2 7E-11 1.5E-15 106.8 7.7 148 57-231 2-163 (180)
173 PF00009 GTP_EFTU: Elongation 99.2 1.3E-10 2.8E-15 106.6 9.3 149 56-231 3-187 (188)
174 cd01858 NGP_1 NGP-1. Autoanti 99.2 4.5E-11 9.8E-16 106.4 6.1 57 55-131 101-157 (157)
175 cd04126 Rab20 Rab20 subfamily. 99.2 4.4E-11 9.5E-16 112.7 6.2 83 57-167 1-83 (220)
176 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.1 1.1E-10 2.3E-15 105.6 8.1 148 57-231 3-164 (172)
177 PLN03071 GTP-binding nuclear p 99.1 7.2E-11 1.6E-15 111.1 7.2 151 55-231 12-172 (219)
178 cd04135 Tc10 TC10 subfamily. 99.1 3.1E-10 6.8E-15 101.8 10.8 86 57-166 1-86 (174)
179 smart00174 RHO Rho (Ras homolo 99.1 7.3E-11 1.6E-15 105.9 6.5 145 59-230 1-171 (174)
180 cd01874 Cdc42 Cdc42 subfamily. 99.1 8.9E-11 1.9E-15 106.4 7.1 145 57-228 2-172 (175)
181 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.3E-10 2.8E-15 113.7 8.3 87 54-161 36-128 (313)
182 COG1161 Predicted GTPases [Gen 99.1 1.1E-10 2.4E-15 116.0 7.5 62 55-136 131-192 (322)
183 cd01893 Miro1 Miro1 subfamily. 99.1 6.2E-10 1.3E-14 99.6 11.4 145 58-230 2-163 (166)
184 PRK13351 elongation factor G; 99.1 1.1E-10 2.4E-15 127.4 7.7 228 56-346 8-258 (687)
185 cd01870 RhoA_like RhoA-like su 99.1 7.2E-10 1.6E-14 99.5 11.4 85 57-165 2-86 (175)
186 TIGR02836 spore_IV_A stage IV 99.1 2.4E-09 5.1E-14 107.5 15.5 96 54-161 15-155 (492)
187 cd01888 eIF2_gamma eIF2-gamma 99.1 2.4E-10 5.1E-15 106.3 7.5 102 121-233 83-201 (203)
188 cd01876 YihA_EngB The YihA (En 99.1 4.5E-10 9.8E-15 99.0 8.9 87 58-164 1-94 (170)
189 PRK09563 rbgA GTPase YlqF; Rev 99.1 2.3E-10 5E-15 112.1 7.4 63 54-136 119-181 (287)
190 TIGR00475 selB selenocysteine- 99.1 2.3E-10 5E-15 122.3 7.5 147 57-232 1-167 (581)
191 cd04133 Rop_like Rop subfamily 99.1 3.7E-10 7.9E-15 102.8 7.6 147 57-230 2-172 (176)
192 cd01849 YlqF_related_GTPase Yl 99.1 2.5E-10 5.5E-15 101.5 6.4 58 54-131 98-155 (155)
193 PRK00741 prfC peptide chain re 99.0 3.8E-10 8.3E-15 119.0 8.2 98 55-163 9-114 (526)
194 cd04130 Wrch_1 Wrch-1 subfamil 99.0 1.2E-09 2.6E-14 98.4 10.2 87 57-167 1-87 (173)
195 PRK12317 elongation factor 1-a 99.0 3.6E-10 7.8E-15 116.8 7.6 84 56-163 6-119 (425)
196 cd01871 Rac1_like Rac1-like su 99.0 1.5E-09 3.1E-14 98.4 10.6 145 57-228 2-172 (174)
197 cd04131 Rnd Rnd subfamily. Th 99.0 5.9E-10 1.3E-14 101.5 8.1 89 57-169 2-90 (178)
198 KOG0084 GTPase Rab1/YPT1, smal 99.0 2.1E-10 4.6E-15 103.5 5.0 156 54-232 7-173 (205)
199 cd04134 Rho3 Rho3 subfamily. 99.0 3.8E-10 8.3E-15 103.5 6.7 148 57-231 1-174 (189)
200 KOG0078 GTP-binding protein SE 99.0 3.3E-10 7.2E-15 103.5 5.7 152 53-230 9-173 (207)
201 KOG0394 Ras-related GTPase [Ge 99.0 2.5E-09 5.4E-14 95.5 10.9 87 53-162 6-92 (210)
202 CHL00189 infB translation init 99.0 2.8E-10 6.2E-15 123.3 5.7 91 53-164 241-331 (742)
203 TIGR00487 IF-2 translation ini 99.0 1.2E-09 2.7E-14 116.5 10.4 88 53-164 84-171 (587)
204 COG0480 FusA Translation elong 99.0 3.9E-10 8.4E-15 121.6 6.4 234 55-345 9-257 (697)
205 TIGR03596 GTPase_YlqF ribosome 99.0 4.9E-10 1.1E-14 109.2 6.6 61 55-135 117-177 (276)
206 cd04161 Arl2l1_Arl13_like Arl2 99.0 1.1E-09 2.4E-14 98.3 8.4 78 58-163 1-78 (167)
207 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.0 9.9E-10 2.1E-14 100.5 7.8 148 55-229 4-178 (182)
208 PRK05306 infB translation init 99.0 1.3E-09 2.8E-14 119.2 9.7 87 53-164 287-373 (787)
209 PF00350 Dynamin_N: Dynamin fa 99.0 1E-09 2.3E-14 98.1 7.4 101 59-163 1-140 (168)
210 PRK12735 elongation factor Tu; 99.0 3.1E-09 6.7E-14 108.8 11.5 86 55-164 11-111 (396)
211 TIGR00993 3a0901s04IAP86 chlor 99.0 1.6E-09 3.5E-14 114.2 9.4 93 53-162 115-212 (763)
212 cd04104 p47_IIGP_like p47 (47- 99.0 3.5E-09 7.6E-14 98.0 10.8 84 56-161 1-90 (197)
213 PF04548 AIG1: AIG1 family; I 99.0 1.4E-09 3.1E-14 101.8 8.2 89 57-162 1-94 (212)
214 KOG0073 GTP-binding ADP-ribosy 99.0 9.5E-09 2.1E-13 90.2 12.6 80 55-162 15-94 (185)
215 cd01875 RhoG RhoG subfamily. 99.0 1.2E-09 2.7E-14 100.3 7.7 147 57-230 4-176 (191)
216 cd04129 Rho2 Rho2 subfamily. 99.0 2.4E-09 5.1E-14 98.0 9.3 147 57-230 2-172 (187)
217 TIGR01393 lepA GTP-binding pro 99.0 1E-09 2.2E-14 117.5 7.8 152 57-232 4-181 (595)
218 PLN03127 Elongation factor Tu; 99.0 5.6E-09 1.2E-13 108.3 13.0 87 54-164 59-160 (447)
219 PRK10512 selenocysteinyl-tRNA- 99.0 1.7E-09 3.6E-14 116.2 9.2 147 58-232 2-167 (614)
220 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.0 1E-09 2.2E-14 104.2 6.6 150 55-231 12-188 (232)
221 cd01855 YqeH YqeH. YqeH is an 99.0 6.4E-10 1.4E-14 102.1 5.1 56 56-131 127-190 (190)
222 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 1.3E-09 2.8E-14 95.3 6.4 55 58-132 85-139 (141)
223 PF02824 TGS: TGS domain; Int 98.9 1.1E-09 2.4E-14 81.6 4.9 59 341-421 1-59 (60)
224 PF00025 Arf: ADP-ribosylation 98.9 8.7E-09 1.9E-13 93.5 11.8 85 54-166 12-96 (175)
225 KOG1424 Predicted GTP-binding 98.9 6.8E-10 1.5E-14 112.8 4.9 61 56-136 314-374 (562)
226 PF00071 Ras: Ras family; Int 98.9 1.2E-09 2.6E-14 96.7 5.4 147 58-230 1-160 (162)
227 PRK12736 elongation factor Tu; 98.9 8.9E-09 1.9E-13 105.4 12.0 86 55-164 11-111 (394)
228 TIGR00491 aIF-2 translation in 98.9 6.8E-09 1.5E-13 110.8 11.3 97 56-163 4-104 (590)
229 cd00882 Ras_like_GTPase Ras-li 98.9 7.6E-10 1.6E-14 94.5 3.2 82 61-165 1-82 (157)
230 cd04103 Centaurin_gamma Centau 98.9 3.6E-09 7.8E-14 94.4 7.6 139 57-228 1-156 (158)
231 CHL00071 tufA elongation facto 98.9 3.3E-09 7.3E-14 109.0 8.1 86 55-164 11-111 (409)
232 KOG0095 GTPase Rab30, small G 98.9 4.7E-09 1E-13 90.5 7.6 149 56-230 7-168 (213)
233 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.9 1.6E-08 3.5E-13 95.4 12.1 87 57-167 2-88 (222)
234 PTZ00132 GTP-binding nuclear p 98.9 7.1E-09 1.5E-13 96.9 9.3 155 55-237 8-174 (215)
235 cd01856 YlqF YlqF. Proteins o 98.9 3.5E-09 7.6E-14 95.7 6.8 59 54-132 113-171 (171)
236 PF10662 PduV-EutP: Ethanolami 98.9 1.2E-08 2.7E-13 89.0 9.9 77 57-166 2-78 (143)
237 KOG0075 GTP-binding ADP-ribosy 98.9 2.3E-09 5.1E-14 92.3 5.1 84 56-166 20-103 (186)
238 smart00176 RAN Ran (Ras-relate 98.9 2.3E-09 4.9E-14 99.6 5.1 143 62-232 1-155 (200)
239 KOG0080 GTPase Rab18, small G 98.8 5E-09 1.1E-13 91.5 6.3 153 55-233 10-176 (209)
240 PRK05433 GTP-binding protein L 98.8 5.4E-09 1.2E-13 112.1 7.3 153 56-232 7-185 (600)
241 PRK12740 elongation factor G; 98.8 6.6E-09 1.4E-13 113.3 7.2 48 300-347 196-243 (668)
242 cd01883 EF1_alpha Eukaryotic e 98.8 1.1E-08 2.3E-13 96.3 7.5 82 58-163 1-112 (219)
243 cd04105 SR_beta Signal recogni 98.8 1.6E-08 3.4E-13 94.1 8.3 83 57-163 1-84 (203)
244 PRK13796 GTPase YqeH; Provisio 98.8 5.7E-09 1.2E-13 105.6 5.7 59 56-134 160-223 (365)
245 KOG2423 Nucleolar GTPase [Gene 98.8 3.6E-09 7.9E-14 104.3 3.9 88 29-136 279-367 (572)
246 PF08477 Miro: Miro-like prote 98.8 1.2E-08 2.6E-13 85.7 6.6 82 58-163 1-85 (119)
247 cd01851 GBP Guanylate-binding 98.8 1.6E-08 3.4E-13 95.6 8.0 92 56-162 7-102 (224)
248 TIGR00503 prfC peptide chain r 98.8 4E-09 8.6E-14 111.4 4.3 98 55-163 10-115 (527)
249 cd01873 RhoBTB RhoBTB subfamil 98.8 1E-08 2.2E-13 94.8 6.3 88 56-168 2-104 (195)
250 PRK10218 GTP-binding protein; 98.8 4.1E-08 8.9E-13 105.1 11.5 85 56-164 5-104 (607)
251 TIGR03597 GTPase_YqeH ribosome 98.8 7.7E-09 1.7E-13 104.5 5.5 59 56-134 154-217 (360)
252 TIGR03680 eif2g_arch translati 98.8 1.3E-08 2.8E-13 104.5 7.1 164 56-231 4-196 (406)
253 PRK05506 bifunctional sulfate 98.8 1.5E-08 3.3E-13 109.7 7.9 103 55-164 23-140 (632)
254 cd04102 RabL3 RabL3 (Rab-like3 98.7 8.8E-09 1.9E-13 95.8 5.1 93 57-167 1-93 (202)
255 PRK00049 elongation factor Tu; 98.7 2.1E-08 4.6E-13 102.6 8.1 86 55-164 11-111 (396)
256 TIGR01394 TypA_BipA GTP-bindin 98.7 6.6E-08 1.4E-12 103.6 12.1 84 57-164 2-100 (594)
257 KOG0098 GTPase Rab2, small G p 98.7 3E-07 6.6E-12 82.5 14.1 151 56-305 6-156 (216)
258 PRK04000 translation initiatio 98.7 9.3E-09 2E-13 105.7 5.0 167 54-232 7-202 (411)
259 PRK04004 translation initiatio 98.7 1.1E-07 2.3E-12 101.9 12.4 98 55-163 5-106 (586)
260 PLN03126 Elongation factor Tu; 98.7 4.7E-08 1E-12 102.1 9.1 87 54-164 79-180 (478)
261 KOG2484 GTPase [General functi 98.7 1.4E-08 3E-13 100.7 4.5 64 53-136 249-312 (435)
262 TIGR00485 EF-Tu translation el 98.7 4.7E-08 1E-12 100.1 8.6 86 55-164 11-111 (394)
263 PRK05124 cysN sulfate adenylyl 98.7 4.2E-08 9.2E-13 102.6 7.9 104 54-164 25-143 (474)
264 TIGR00483 EF-1_alpha translati 98.7 3.9E-08 8.4E-13 101.7 7.5 87 55-165 6-122 (426)
265 cd01850 CDC_Septin CDC/Septin. 98.7 2.9E-07 6.4E-12 89.7 13.0 65 56-135 4-77 (276)
266 cd04167 Snu114p Snu114p subfam 98.6 6E-08 1.3E-12 90.7 7.4 87 58-163 2-106 (213)
267 cd01885 EF2 EF2 (for archaea a 98.6 7.5E-08 1.6E-12 90.8 7.8 93 58-164 2-109 (222)
268 cd01859 MJ1464 MJ1464. This f 98.6 5E-08 1.1E-12 86.5 6.2 57 55-131 100-156 (156)
269 TIGR02034 CysN sulfate adenyly 98.6 5.3E-08 1.2E-12 100.0 6.9 84 57-164 1-116 (406)
270 PRK12289 GTPase RsgA; Reviewed 98.6 3.7E-08 8E-13 99.0 5.5 58 58-135 174-238 (352)
271 KOG0079 GTP-binding protein H- 98.6 7.2E-09 1.6E-13 89.3 -0.2 152 56-230 8-168 (198)
272 PRK12288 GTPase RsgA; Reviewed 98.6 4.6E-08 1E-12 98.2 5.6 58 58-135 207-271 (347)
273 KOG0462 Elongation factor-type 98.6 3.4E-07 7.3E-12 94.1 11.7 156 56-232 60-236 (650)
274 KOG0087 GTPase Rab11/YPT3, sma 98.6 3.9E-08 8.5E-13 89.8 3.3 152 52-229 10-174 (222)
275 KOG0091 GTPase Rab39, small G 98.6 1.1E-07 2.4E-12 83.5 5.9 147 56-227 8-169 (213)
276 KOG0093 GTPase Rab3, small G p 98.5 5.1E-08 1.1E-12 84.1 3.3 152 54-231 19-183 (193)
277 PF09439 SRPRB: Signal recogni 98.5 1.4E-07 3E-12 85.9 6.3 81 56-162 3-86 (181)
278 smart00053 DYNc Dynamin, GTPas 98.5 4.7E-07 1E-11 86.3 9.9 105 55-163 25-174 (240)
279 TIGR00157 ribosome small subun 98.5 1E-07 2.2E-12 91.4 5.3 58 57-135 121-185 (245)
280 PF05049 IIGP: Interferon-indu 98.5 1.9E-07 4.2E-12 93.8 7.2 88 52-161 31-124 (376)
281 cd01882 BMS1 Bms1. Bms1 is an 98.5 3.1E-07 6.8E-12 86.8 8.3 80 53-163 36-115 (225)
282 KOG0086 GTPase Rab4, small G p 98.5 1.4E-07 3.1E-12 81.8 4.9 91 54-167 7-97 (214)
283 KOG2485 Conserved ATP/GTP bind 98.5 2.7E-07 5.8E-12 89.2 6.1 70 51-137 138-212 (335)
284 cd04165 GTPBP1_like GTPBP1-lik 98.4 7.5E-07 1.6E-11 84.2 8.9 38 120-164 83-122 (224)
285 COG1100 GTPase SAR1 and relate 98.4 7E-07 1.5E-11 83.2 8.3 84 57-163 6-89 (219)
286 PLN00023 GTP-binding protein; 98.4 8.6E-07 1.9E-11 87.6 8.9 98 56-163 21-118 (334)
287 PLN00043 elongation factor 1-a 98.4 1.6E-06 3.5E-11 90.1 10.9 84 55-163 6-120 (447)
288 PTZ00327 eukaryotic translatio 98.4 5.3E-07 1.1E-11 93.7 7.1 166 54-232 32-234 (460)
289 KOG0088 GTPase Rab21, small G 98.4 7.6E-08 1.6E-12 84.0 0.5 148 55-230 12-174 (218)
290 PRK09435 membrane ATPase/prote 98.4 9.1E-07 2E-11 88.1 8.1 172 53-243 53-270 (332)
291 PRK13768 GTPase; Provisional 98.4 1.1E-06 2.5E-11 84.5 8.5 43 121-164 97-141 (253)
292 TIGR00490 aEF-2 translation el 98.3 6.4E-07 1.4E-11 98.5 6.9 89 56-164 19-122 (720)
293 KOG0070 GTP-binding ADP-ribosy 98.3 4.8E-07 1E-11 81.2 4.8 84 55-166 16-99 (181)
294 PRK00098 GTPase RsgA; Reviewed 98.3 4.8E-07 1E-11 89.2 5.3 58 56-133 164-228 (298)
295 COG2229 Predicted GTPase [Gene 98.3 1.1E-05 2.5E-10 72.5 13.3 86 56-164 10-104 (187)
296 PTZ00141 elongation factor 1- 98.3 1E-06 2.2E-11 91.5 7.7 86 55-164 6-121 (446)
297 PF03193 DUF258: Protein of un 98.3 3.6E-07 7.8E-12 81.6 3.7 58 57-134 36-100 (161)
298 COG0481 LepA Membrane GTPase L 98.3 1.3E-06 2.7E-11 88.6 7.9 157 57-232 10-187 (603)
299 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 1.9E-06 4.1E-11 81.7 8.2 88 58-163 1-88 (232)
300 PTZ00416 elongation factor 2; 98.3 1.8E-06 3.8E-11 96.4 8.0 95 56-164 19-128 (836)
301 KOG0465 Mitochondrial elongati 98.3 6.7E-07 1.4E-11 92.9 4.1 234 55-345 38-287 (721)
302 PRK07560 elongation factor EF- 98.2 1.7E-06 3.8E-11 95.2 6.8 89 56-164 20-123 (731)
303 cd01854 YjeQ_engC YjeQ/EngC. 98.2 1.7E-06 3.8E-11 84.8 5.5 59 57-135 162-227 (287)
304 PLN00116 translation elongatio 98.2 1.8E-06 4E-11 96.3 6.3 101 56-164 19-134 (843)
305 TIGR00691 spoT_relA (p)ppGpp s 98.2 4.5E-06 9.7E-11 90.9 8.8 63 339-423 360-422 (683)
306 KOG0090 Signal recognition par 98.2 2.4E-06 5.2E-11 78.5 5.5 79 56-162 38-119 (238)
307 KOG0076 GTP-binding ADP-ribosy 98.2 2.2E-06 4.9E-11 76.1 4.8 86 56-166 17-107 (197)
308 COG4108 PrfC Peptide chain rel 98.1 2.6E-06 5.6E-11 85.7 5.1 163 57-259 13-188 (528)
309 COG5257 GCD11 Translation init 98.1 1.1E-05 2.4E-10 78.4 8.2 164 54-232 8-203 (415)
310 COG1162 Predicted GTPases [Gen 98.1 2.9E-06 6.3E-11 82.5 4.3 59 56-134 164-229 (301)
311 COG5256 TEF1 Translation elong 98.0 8.3E-06 1.8E-10 81.9 6.7 85 56-165 7-122 (428)
312 KOG0074 GTP-binding ADP-ribosy 98.0 2.2E-05 4.8E-10 67.6 8.0 83 54-163 15-97 (185)
313 KOG1145 Mitochondrial translat 98.0 3.1E-05 6.8E-10 79.9 9.9 89 52-164 149-237 (683)
314 PRK10872 relA (p)ppGpp synthet 98.0 1.6E-05 3.5E-10 86.5 8.3 63 339-423 404-466 (743)
315 KOG1547 Septin CDC10 and relat 98.0 0.00036 7.8E-09 65.5 15.3 84 37-135 25-118 (336)
316 KOG0395 Ras-related GTPase [Ge 98.0 0.00012 2.5E-09 67.9 12.3 84 56-163 3-86 (196)
317 COG5019 CDC3 Septin family pro 97.9 0.0002 4.2E-09 71.2 13.2 28 52-79 19-46 (373)
318 KOG0097 GTPase Rab14, small G 97.9 1.7E-05 3.6E-10 68.1 4.9 90 54-167 9-99 (215)
319 KOG0464 Elongation factor G [T 97.9 3.6E-05 7.8E-10 76.9 7.5 212 56-320 37-267 (753)
320 KOG0083 GTPase Rab26/Rab37, sm 97.9 1.6E-06 3.5E-11 73.7 -1.7 149 61-232 2-161 (192)
321 KOG4252 GTP-binding protein [S 97.9 3.6E-06 7.7E-11 75.1 0.3 151 55-231 19-181 (246)
322 PF08438 MMR_HSR1_C: GTPase of 97.8 2.9E-05 6.2E-10 64.6 4.9 77 263-347 1-108 (109)
323 COG4917 EutP Ethanolamine util 97.8 8.1E-05 1.8E-09 63.0 7.6 78 57-166 2-79 (148)
324 KOG0448 Mitofusin 1 GTPase, in 97.8 3.3E-05 7.1E-10 81.6 6.5 107 52-163 105-244 (749)
325 KOG2655 Septin family protein 97.8 0.00047 1E-08 68.9 14.2 32 48-79 13-44 (366)
326 COG0532 InfB Translation initi 97.8 5.1E-05 1.1E-09 78.5 7.7 88 55-164 4-91 (509)
327 PF00735 Septin: Septin; Inte 97.8 4E-05 8.8E-10 74.9 6.2 26 56-81 4-29 (281)
328 TIGR00750 lao LAO/AO transport 97.7 4.6E-05 1E-09 75.2 5.7 25 54-78 32-56 (300)
329 COG3276 SelB Selenocysteine-sp 97.7 0.00016 3.4E-09 73.3 8.6 84 57-164 1-86 (447)
330 TIGR00101 ureG urease accessor 97.6 8E-05 1.7E-09 69.1 5.7 23 56-78 1-23 (199)
331 KOG1532 GTPase XAB1, interacts 97.6 0.00014 2.9E-09 69.6 7.1 25 54-78 17-41 (366)
332 cd03112 CobW_like The function 97.6 6E-05 1.3E-09 67.3 4.3 105 58-162 2-129 (158)
333 KOG0081 GTPase Rab27, small G 97.6 1.2E-05 2.5E-10 70.6 -0.6 151 58-225 11-175 (219)
334 PF03029 ATP_bind_1: Conserved 97.6 8.5E-05 1.8E-09 70.9 5.1 42 122-164 92-135 (238)
335 PF03308 ArgK: ArgK protein; 97.5 0.00016 3.5E-09 69.1 6.4 23 55-77 28-50 (266)
336 PRK01889 GTPase RsgA; Reviewed 97.5 5.9E-05 1.3E-09 76.2 3.4 30 56-85 195-224 (356)
337 TIGR00073 hypB hydrogenase acc 97.5 0.00035 7.5E-09 65.1 7.9 26 53-78 19-44 (207)
338 KOG0077 Vesicle coat complex C 97.5 0.00018 3.9E-09 63.7 5.3 80 55-162 19-98 (193)
339 PTZ00099 rab6; Provisional 97.5 7.3E-05 1.6E-09 67.9 2.9 102 121-232 29-143 (176)
340 KOG3883 Ras family small GTPas 97.4 0.00052 1.1E-08 60.0 7.6 93 50-162 3-95 (198)
341 PRK10463 hydrogenase nickel in 97.4 0.00067 1.4E-08 66.3 9.2 25 54-78 102-126 (290)
342 PRK11092 bifunctional (p)ppGpp 97.4 0.00043 9.3E-09 75.6 8.0 63 339-423 386-448 (702)
343 TIGR01425 SRP54_euk signal rec 97.4 0.00057 1.2E-08 70.4 8.1 104 56-164 100-225 (429)
344 COG0317 SpoT Guanosine polypho 97.3 0.00028 6E-09 76.1 5.8 63 339-423 387-449 (701)
345 KOG0461 Selenocysteine-specifi 97.3 0.0019 4E-08 63.7 10.9 91 56-164 7-106 (522)
346 KOG2486 Predicted GTPase [Gene 97.3 0.00077 1.7E-08 64.7 7.5 90 55-164 135-232 (320)
347 KOG3886 GTP-binding protein [S 97.2 0.00021 4.5E-09 66.7 3.1 87 55-164 3-94 (295)
348 KOG0468 U5 snRNP-specific prot 97.2 0.00075 1.6E-08 71.3 7.2 91 56-165 128-234 (971)
349 COG1217 TypA Predicted membran 97.2 0.00097 2.1E-08 68.0 7.7 96 57-165 6-105 (603)
350 KOG0071 GTP-binding ADP-ribosy 97.2 0.0011 2.4E-08 57.2 6.8 80 56-163 17-96 (180)
351 KOG0458 Elongation factor 1 al 97.2 0.00074 1.6E-08 70.5 6.8 100 56-166 177-293 (603)
352 COG5192 BMS1 GTP-binding prote 97.1 0.00045 9.8E-09 71.6 3.8 77 55-162 68-144 (1077)
353 PRK14845 translation initiatio 97.0 0.0025 5.5E-08 72.2 9.7 86 68-163 473-561 (1049)
354 KOG1954 Endocytosis/signaling 97.0 0.0028 6E-08 63.1 8.4 106 55-163 57-193 (532)
355 KOG0393 Ras-related small GTPa 96.9 0.00052 1.1E-08 63.2 2.7 87 56-165 4-90 (198)
356 PF00448 SRP54: SRP54-type pro 96.9 0.00074 1.6E-08 62.5 3.7 21 57-77 2-22 (196)
357 COG0378 HypB Ni2+-binding GTPa 96.9 0.0049 1.1E-07 56.5 8.8 22 56-77 13-34 (202)
358 COG1703 ArgK Putative periplas 96.9 0.0026 5.6E-08 61.8 7.1 25 53-77 48-72 (323)
359 PRK14722 flhF flagellar biosyn 96.9 0.0011 2.4E-08 67.2 4.8 23 56-78 137-159 (374)
360 KOG0072 GTP-binding ADP-ribosy 96.9 0.0011 2.4E-08 57.5 3.8 84 55-166 17-100 (182)
361 PRK11889 flhF flagellar biosyn 96.9 0.0017 3.7E-08 65.9 5.9 22 56-77 241-262 (436)
362 cd03114 ArgK-like The function 96.8 0.0026 5.7E-08 56.1 5.8 20 59-78 2-21 (148)
363 PRK10416 signal recognition pa 96.8 0.0035 7.5E-08 62.4 7.1 23 56-78 114-136 (318)
364 KOG1707 Predicted Ras related/ 96.7 0.013 2.9E-07 61.5 11.3 86 56-166 9-94 (625)
365 TIGR03263 guanyl_kin guanylate 96.7 0.001 2.2E-08 60.1 2.6 42 57-98 2-43 (180)
366 cd01616 TGS The TGS domain, na 96.7 0.0036 7.7E-08 45.0 5.0 51 352-421 9-59 (60)
367 PRK14721 flhF flagellar biosyn 96.6 0.0045 9.7E-08 63.8 6.7 24 55-78 190-213 (420)
368 PRK14974 cell division protein 96.5 0.0056 1.2E-07 61.3 6.8 22 56-77 140-161 (336)
369 cd00071 GMPK Guanosine monopho 96.5 0.0022 4.8E-08 55.8 3.5 40 59-98 2-42 (137)
370 PRK14737 gmk guanylate kinase; 96.4 0.0026 5.6E-08 58.4 3.5 44 56-99 4-47 (186)
371 COG0050 TufB GTPases - transla 96.4 0.013 2.9E-07 56.8 8.3 85 56-165 12-112 (394)
372 COG1116 TauB ABC-type nitrate/ 96.4 0.0036 7.8E-08 59.4 4.4 26 56-81 29-54 (248)
373 PRK12726 flagellar biosynthesi 96.4 0.0015 3.2E-08 66.2 1.7 23 55-77 205-227 (407)
374 KOG2749 mRNA cleavage and poly 96.4 0.0058 1.2E-07 60.6 5.5 51 52-103 99-150 (415)
375 TIGR00064 ftsY signal recognit 96.3 0.0068 1.5E-07 59.0 6.0 22 56-77 72-93 (272)
376 KOG1673 Ras GTPases [General f 96.3 0.017 3.6E-07 50.9 7.4 90 54-166 18-107 (205)
377 PRK00300 gmk guanylate kinase; 96.2 0.0036 7.7E-08 57.8 3.3 44 55-98 4-47 (205)
378 cd03115 SRP The signal recogni 96.2 0.0074 1.6E-07 54.2 5.2 20 58-77 2-21 (173)
379 KOG0469 Elongation factor 2 [T 96.1 0.008 1.7E-07 61.9 5.4 102 57-165 20-135 (842)
380 PRK05703 flhF flagellar biosyn 96.1 0.005 1.1E-07 63.7 4.0 22 56-77 221-242 (424)
381 PF13207 AAA_17: AAA domain; P 96.1 0.0044 9.6E-08 51.9 2.8 20 58-77 1-20 (121)
382 PRK14738 gmk guanylate kinase; 96.1 0.005 1.1E-07 57.3 3.4 43 55-97 12-54 (206)
383 COG0194 Gmk Guanylate kinase [ 96.0 0.0033 7.2E-08 57.2 2.0 45 55-100 3-47 (191)
384 COG3840 ThiQ ABC-type thiamine 96.0 0.0041 8.9E-08 56.5 2.4 23 56-78 25-47 (231)
385 PF00005 ABC_tran: ABC transpo 96.0 0.0048 1E-07 52.9 2.8 25 55-79 10-34 (137)
386 PRK00771 signal recognition pa 96.0 0.016 3.4E-07 60.2 7.0 23 55-77 94-116 (437)
387 PRK06731 flhF flagellar biosyn 96.0 0.015 3.3E-07 56.5 6.4 24 55-78 74-97 (270)
388 KOG1144 Translation initiation 95.9 0.041 8.8E-07 59.3 9.4 100 55-164 474-576 (1064)
389 PRK10751 molybdopterin-guanine 95.9 0.0069 1.5E-07 54.9 3.2 22 56-77 6-27 (173)
390 COG1618 Predicted nucleotide k 95.8 0.014 3E-07 52.0 4.8 24 54-77 3-26 (179)
391 PRK07261 topology modulation p 95.8 0.0065 1.4E-07 54.9 2.6 21 57-77 1-21 (171)
392 PRK12724 flagellar biosynthesi 95.7 0.0066 1.4E-07 62.3 2.9 21 57-77 224-244 (432)
393 cd03116 MobB Molybdenum is an 95.7 0.0067 1.5E-07 54.2 2.5 21 57-77 2-22 (159)
394 PRK12723 flagellar biosynthesi 95.6 0.022 4.9E-07 58.1 6.3 22 56-77 174-195 (388)
395 cd02042 ParA ParA and ParB of 95.6 0.032 7E-07 45.5 6.1 70 59-162 2-72 (104)
396 PRK12727 flagellar biosynthesi 95.6 0.018 3.8E-07 60.8 5.5 24 55-78 349-372 (559)
397 PF05783 DLIC: Dynein light in 95.6 0.35 7.6E-06 50.7 14.9 41 55-99 24-64 (472)
398 COG1136 SalX ABC-type antimicr 95.6 0.0088 1.9E-07 56.4 2.8 25 56-80 31-55 (226)
399 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.021 4.5E-07 45.0 4.5 68 59-162 2-69 (99)
400 PRK14723 flhF flagellar biosyn 95.5 0.028 6.1E-07 61.8 6.8 23 56-78 185-207 (767)
401 cd02019 NK Nucleoside/nucleoti 95.4 0.011 2.3E-07 45.0 2.3 19 59-77 2-20 (69)
402 PRK10867 signal recognition pa 95.4 0.031 6.6E-07 58.0 6.2 22 56-77 100-121 (433)
403 COG0563 Adk Adenylate kinase a 95.4 0.011 2.4E-07 53.9 2.6 21 57-77 1-21 (178)
404 PF02263 GBP: Guanylate-bindin 95.3 0.043 9.3E-07 53.1 6.9 66 55-133 20-86 (260)
405 PF13555 AAA_29: P-loop contai 95.3 0.012 2.6E-07 43.9 2.3 20 58-77 25-44 (62)
406 PRK10078 ribose 1,5-bisphospho 95.3 0.012 2.7E-07 53.6 2.8 23 56-78 2-24 (186)
407 COG1419 FlhF Flagellar GTP-bin 95.3 0.014 3.1E-07 59.2 3.3 67 56-129 203-269 (407)
408 KOG4423 GTP-binding protein-li 95.2 0.0016 3.5E-08 58.9 -3.1 92 54-167 23-114 (229)
409 KOG1533 Predicted GTPase [Gene 95.2 0.022 4.8E-07 53.6 4.1 21 57-77 3-23 (290)
410 COG1134 TagH ABC-type polysacc 95.2 0.013 2.8E-07 55.6 2.6 24 55-78 52-75 (249)
411 cd03264 ABC_drug_resistance_li 95.2 0.013 2.7E-07 54.5 2.6 23 56-79 26-48 (211)
412 cd03261 ABC_Org_Solvent_Resist 95.2 0.012 2.7E-07 55.6 2.5 25 55-79 25-49 (235)
413 cd03225 ABC_cobalt_CbiO_domain 95.2 0.013 2.7E-07 54.5 2.5 25 55-79 26-50 (211)
414 PRK14530 adenylate kinase; Pro 95.2 0.014 2.9E-07 54.6 2.8 23 55-77 2-24 (215)
415 PF13521 AAA_28: AAA domain; P 95.2 0.01 2.2E-07 52.8 1.8 20 58-77 1-20 (163)
416 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.013 2.7E-07 51.4 2.2 26 55-80 25-50 (144)
417 PF02492 cobW: CobW/HypB/UreG, 95.1 0.039 8.3E-07 50.1 5.5 103 58-163 2-125 (178)
418 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.1 0.014 2.9E-07 54.5 2.6 25 55-79 29-53 (218)
419 cd01130 VirB11-like_ATPase Typ 95.1 0.015 3.1E-07 53.2 2.7 24 55-78 24-47 (186)
420 TIGR01166 cbiO cobalt transpor 95.1 0.013 2.8E-07 53.5 2.3 25 55-79 17-41 (190)
421 TIGR03608 L_ocin_972_ABC putat 95.1 0.014 3E-07 53.9 2.5 25 55-79 23-47 (206)
422 cd03265 ABC_DrrA DrrA is the A 95.1 0.014 3E-07 54.6 2.5 25 55-79 25-49 (220)
423 KOG3859 Septins (P-loop GTPase 95.1 0.032 6.8E-07 53.8 4.9 68 54-137 40-111 (406)
424 PF13671 AAA_33: AAA domain; P 95.1 0.015 3.3E-07 50.0 2.6 19 59-77 2-20 (143)
425 TIGR00960 3a0501s02 Type II (G 95.1 0.016 3.4E-07 54.1 2.8 25 55-79 28-52 (216)
426 TIGR02673 FtsE cell division A 95.1 0.014 3.1E-07 54.2 2.5 25 55-79 27-51 (214)
427 COG0411 LivG ABC-type branched 95.1 0.005 1.1E-07 58.3 -0.6 24 56-79 30-53 (250)
428 TIGR03499 FlhF flagellar biosy 95.0 0.0098 2.1E-07 58.2 1.4 22 56-77 194-215 (282)
429 COG3638 ABC-type phosphate/pho 95.0 0.019 4.1E-07 54.2 3.2 22 56-77 30-51 (258)
430 PRK08118 topology modulation p 95.0 0.016 3.5E-07 52.1 2.6 21 57-77 2-22 (167)
431 cd03222 ABC_RNaseL_inhibitor T 95.0 0.016 3.5E-07 52.7 2.6 26 54-79 23-48 (177)
432 PF13238 AAA_18: AAA domain; P 95.0 0.017 3.7E-07 48.4 2.6 19 59-77 1-19 (129)
433 cd03263 ABC_subfamily_A The AB 95.0 0.014 3.1E-07 54.5 2.3 25 55-79 27-51 (220)
434 PRK05480 uridine/cytidine kina 95.0 0.018 3.8E-07 53.5 2.9 24 55-78 5-28 (209)
435 PRK13541 cytochrome c biogenes 95.0 0.018 3.9E-07 52.9 2.9 25 55-79 25-49 (195)
436 cd03226 ABC_cobalt_CbiO_domain 94.9 0.016 3.6E-07 53.5 2.5 25 55-79 25-49 (205)
437 cd03218 ABC_YhbG The ABC trans 94.9 0.016 3.5E-07 54.5 2.5 25 55-79 25-49 (232)
438 cd03292 ABC_FtsE_transporter F 94.9 0.017 3.6E-07 53.7 2.5 25 55-79 26-50 (214)
439 COG1341 Predicted GTPase or GT 94.9 0.069 1.5E-06 54.1 7.0 25 54-78 71-95 (398)
440 KOG0447 Dynamin-like GTP bindi 94.9 0.1 2.2E-06 54.6 8.2 104 55-160 307-457 (980)
441 cd03259 ABC_Carb_Solutes_like 94.9 0.017 3.7E-07 53.7 2.5 25 55-79 25-49 (213)
442 TIGR00235 udk uridine kinase. 94.9 0.016 3.5E-07 53.8 2.4 23 56-78 6-28 (207)
443 cd03269 ABC_putative_ATPase Th 94.9 0.017 3.7E-07 53.5 2.5 25 55-79 25-49 (210)
444 PRK03839 putative kinase; Prov 94.9 0.018 3.8E-07 52.2 2.5 21 57-77 1-21 (180)
445 cd03224 ABC_TM1139_LivF_branch 94.9 0.017 3.6E-07 54.0 2.5 25 55-79 25-49 (222)
446 cd03293 ABC_NrtD_SsuB_transpor 94.9 0.017 3.8E-07 54.0 2.5 25 55-79 29-53 (220)
447 cd03229 ABC_Class3 This class 94.8 0.018 4E-07 52.1 2.5 25 55-79 25-49 (178)
448 TIGR02315 ABC_phnC phosphonate 94.8 0.017 3.8E-07 54.7 2.5 25 55-79 27-51 (243)
449 TIGR02211 LolD_lipo_ex lipopro 94.8 0.018 3.9E-07 53.8 2.6 25 55-79 30-54 (221)
450 PRK13543 cytochrome c biogenes 94.8 0.018 4E-07 53.7 2.6 25 55-79 36-60 (214)
451 TIGR02322 phosphon_PhnN phosph 94.8 0.019 4.2E-07 51.7 2.6 21 58-78 3-23 (179)
452 PRK14242 phosphate transporter 94.8 0.018 3.8E-07 55.1 2.5 25 55-79 31-55 (253)
453 cd03260 ABC_PstB_phosphate_tra 94.8 0.02 4.4E-07 53.7 2.8 25 55-79 25-49 (227)
454 cd03258 ABC_MetN_methionine_tr 94.8 0.018 4E-07 54.3 2.5 25 55-79 30-54 (233)
455 cd03262 ABC_HisP_GlnQ_permease 94.8 0.021 4.5E-07 53.0 2.9 25 55-79 25-49 (213)
456 cd03231 ABC_CcmA_heme_exporter 94.8 0.019 4.1E-07 53.1 2.5 25 55-79 25-49 (201)
457 cd03257 ABC_NikE_OppD_transpor 94.8 0.018 4E-07 53.9 2.5 25 55-79 30-54 (228)
458 TIGR01189 ccmA heme ABC export 94.8 0.019 4.1E-07 52.8 2.5 25 55-79 25-49 (198)
459 cd03266 ABC_NatA_sodium_export 94.8 0.019 4.1E-07 53.5 2.5 25 55-79 30-54 (218)
460 cd03216 ABC_Carb_Monos_I This 94.7 0.023 4.9E-07 50.8 2.8 25 55-79 25-49 (163)
461 cd01668 TGS_RelA_SpoT TGS_RelA 94.7 0.088 1.9E-06 38.2 5.6 50 353-421 10-59 (60)
462 PRK13540 cytochrome c biogenes 94.7 0.023 4.9E-07 52.4 2.9 25 55-79 26-50 (200)
463 cd03256 ABC_PhnC_transporter A 94.7 0.018 3.9E-07 54.5 2.3 25 55-79 26-50 (241)
464 cd02023 UMPK Uridine monophosp 94.7 0.018 4E-07 52.9 2.3 20 59-78 2-21 (198)
465 cd03254 ABCC_Glucan_exporter_l 94.7 0.02 4.3E-07 53.9 2.5 25 55-79 28-52 (229)
466 PRK15177 Vi polysaccharide exp 94.7 0.019 4.1E-07 53.7 2.4 25 55-79 12-36 (213)
467 cd03215 ABC_Carb_Monos_II This 94.7 0.02 4.4E-07 52.0 2.5 26 55-80 25-50 (182)
468 COG0488 Uup ATPase components 94.7 0.027 5.9E-07 59.8 3.8 28 54-81 27-54 (530)
469 KOG0467 Translation elongation 94.7 0.12 2.6E-06 56.1 8.5 94 56-164 9-108 (887)
470 cd03235 ABC_Metallic_Cations A 94.7 0.019 4.2E-07 53.3 2.4 25 55-79 24-48 (213)
471 TIGR01978 sufC FeS assembly AT 94.7 0.02 4.4E-07 54.2 2.6 25 55-79 25-49 (243)
472 KOG0466 Translation initiation 94.7 0.018 4E-07 56.0 2.2 164 56-232 38-242 (466)
473 PRK10584 putative ABC transpor 94.7 0.019 4.1E-07 53.9 2.3 25 55-79 35-59 (228)
474 PRK11124 artP arginine transpo 94.7 0.02 4.4E-07 54.3 2.5 25 55-79 27-51 (242)
475 PRK14262 phosphate ABC transpo 94.7 0.02 4.4E-07 54.6 2.5 25 55-79 28-52 (250)
476 cd00820 PEPCK_HprK Phosphoenol 94.7 0.022 4.7E-07 47.5 2.3 22 56-77 15-36 (107)
477 COG4559 ABC-type hemin transpo 94.7 0.02 4.4E-07 53.3 2.3 24 56-79 27-50 (259)
478 PRK11248 tauB taurine transpor 94.7 0.021 4.5E-07 54.9 2.5 25 55-79 26-50 (255)
479 PRK10908 cell division protein 94.6 0.021 4.6E-07 53.4 2.5 25 55-79 27-51 (222)
480 PRK14269 phosphate ABC transpo 94.6 0.021 4.6E-07 54.4 2.5 25 55-79 27-51 (246)
481 cd03219 ABC_Mj1267_LivG_branch 94.6 0.021 4.5E-07 54.0 2.4 25 55-79 25-49 (236)
482 PF03205 MobB: Molybdopterin g 94.6 0.026 5.6E-07 49.4 2.8 21 57-77 1-21 (140)
483 PRK11629 lolD lipoprotein tran 94.6 0.021 4.6E-07 53.9 2.5 25 55-79 34-58 (233)
484 cd03268 ABC_BcrA_bacitracin_re 94.6 0.02 4.4E-07 53.0 2.3 25 55-79 25-49 (208)
485 cd03296 ABC_CysA_sulfate_impor 94.6 0.022 4.7E-07 54.1 2.5 25 55-79 27-51 (239)
486 smart00072 GuKc Guanylate kina 94.6 0.025 5.5E-07 51.5 2.9 43 57-99 3-46 (184)
487 PRK11264 putative amino-acid A 94.6 0.024 5.3E-07 54.0 2.9 25 55-79 28-52 (250)
488 PRK14247 phosphate ABC transpo 94.6 0.022 4.7E-07 54.4 2.5 25 55-79 28-52 (250)
489 cd03301 ABC_MalK_N The N-termi 94.6 0.025 5.5E-07 52.5 2.9 25 55-79 25-49 (213)
490 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.6 0.022 4.7E-07 53.9 2.5 25 55-79 28-52 (238)
491 TIGR03410 urea_trans_UrtE urea 94.6 0.022 4.8E-07 53.6 2.5 25 55-79 25-49 (230)
492 TIGR03864 PQQ_ABC_ATP ABC tran 94.6 0.022 4.9E-07 53.8 2.5 25 55-79 26-50 (236)
493 cd03238 ABC_UvrA The excision 94.6 0.026 5.6E-07 51.3 2.8 24 54-77 19-42 (176)
494 cd03247 ABCC_cytochrome_bd The 94.6 0.023 5E-07 51.3 2.5 25 55-79 27-51 (178)
495 PRK13539 cytochrome c biogenes 94.6 0.023 5E-07 52.7 2.5 25 55-79 27-51 (207)
496 cd03230 ABC_DR_subfamily_A Thi 94.6 0.023 5.1E-07 51.1 2.5 25 55-79 25-49 (173)
497 cd03217 ABC_FeS_Assembly ABC-t 94.6 0.023 4.9E-07 52.5 2.5 25 55-79 25-49 (200)
498 PRK14239 phosphate transporter 94.6 0.022 4.9E-07 54.3 2.5 25 55-79 30-54 (252)
499 cd03233 ABC_PDR_domain1 The pl 94.6 0.022 4.8E-07 52.7 2.4 25 55-79 32-56 (202)
500 PRK14241 phosphate transporter 94.6 0.022 4.9E-07 54.7 2.5 25 55-79 29-53 (258)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=2.6e-92 Score=699.78 Aligned_cols=364 Identities=61% Similarity=0.986 Sum_probs=342.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
|.++|||||+||||||||||+||+.. +.++++||||++|+.|++.+++.|+++|+++++|++.++.++.|+||||++++
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 35799999999999999999999554 89999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak 214 (424)
++.+++++++|++++++||+++||||+|.++++.|+.+..||++|+.+++.||.+++++.++++++++.+..+... +
T Consensus 80 a~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~---~ 156 (364)
T PRK09601 80 ASKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD---K 156 (364)
T ss_pred CChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc---h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654332 2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014450 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (424)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (424)
......++++.|.++|+++.+++..+||++|.+.|+.+.++|.||++|++|+++.+++.. +++.+++.+++.+.+.++
T Consensus 157 ~~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~~--~~~~~~i~~~~~~~~~~~ 234 (364)
T PRK09601 157 EAKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLADG--NPYVKKVREIAAKEGAEV 234 (364)
T ss_pred hHHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccccc--cHHHHHHHHHHHHcCCeE
Confidence 335567789999999999989887789999999999999999999999999999877533 778999999988788889
Q ss_pred EEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhh
Q 014450 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFE 374 (424)
Q Consensus 295 v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~ 374 (424)
|++||++|.+|.+|+++++++||+++|+.+++++++++++|++||||+|||+|++|+|||++++||||+||||+|||||+
T Consensus 235 i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~ 314 (364)
T PRK09601 235 VVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFE 314 (364)
T ss_pred EEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 375 KGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 375 ~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
||||||+|++|+||++|||+++||++||+|++||||+|||||||+|||||
T Consensus 315 kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 315 KGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred hccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999997
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=1.4e-90 Score=694.68 Aligned_cols=367 Identities=49% Similarity=0.812 Sum_probs=342.3
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|||||+||||||||||+|+ +..+.++++||||++|+.|++.+++.|++.|+.+++|++.+++++.|+||||+++
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt-~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALC-KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHh-cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 556899999999999999999999 6668999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcch
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sa 213 (424)
+++.+++++++|++++++||+++||||+|.++++.|+.+..||++|++.++.||.+++++.++++++++.+..+... ..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~-~~ 176 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKK-KK 176 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccc-ch
Confidence 99989999999999999999999999999999999999999999999999999999999999999999886632110 01
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEecccccccc-CCCCCCcchHHHHHHHhhc-C
Q 014450 214 LKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDL-Q 291 (424)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~-~~~~~~~~~~~i~~~~~~~-~ 291 (424)
+.......+++.+.++|.++.+++..+|+++|.+.++.+.++|.||++|++|+++.|+ +.+ +++.+++++++.+. +
T Consensus 177 ~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~--~~~~~~l~~~~~~~~~ 254 (390)
T PTZ00258 177 KEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQK--NKWLAKIKEWVGEKGG 254 (390)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccc--hHHHHHHHHHHHhcCC
Confidence 3344567889999999999999998899999999999999999999999999998776 333 67889999988776 4
Q ss_pred CcEEEecHHhHHHHcCC-CHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhhh
Q 014450 292 SGRVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIH 370 (424)
Q Consensus 292 ~~~v~~sa~~e~~l~~l-~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~IH 370 (424)
.++|++||++|.+|++| +++++.+||+++|+++++++++++.+|++||||+|||+||+|+|||++++||||+||||+||
T Consensus 255 ~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg~IH 334 (390)
T PTZ00258 255 GPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIH 334 (390)
T ss_pred CeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHhhhh
Confidence 78999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 371 SDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 371 sd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|||+||||||+||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 335 sD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 335 SDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred hHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999997
No 3
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=2.8e-89 Score=678.13 Aligned_cols=364 Identities=50% Similarity=0.729 Sum_probs=336.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
|++++||||+||+|||||||+||+.....+++|||||++|+.|++.++|.|+|+|+.+++|++..++++.++|+||++++
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 45899999999999999999999444339999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak 214 (424)
++++++++++|++++++||+++||||+|+++++.|+.+..||++|+.+++.||.+++++.++++++++.+..+.. +
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~----k 156 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG----K 156 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc----h
Confidence 999999999999999999999999999999999999999999999999999999999999999999988764321 2
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhh---cC
Q 014450 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD---LQ 291 (424)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~---~~ 291 (424)
....+..+++++.++|+++.+++...|+++|..+++.++++|.||++|++|++++++.+. .+.+.+.++ |+.+ .+
T Consensus 157 ~~~~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~-n~~~~~~~~-~~~~~~~~~ 234 (368)
T TIGR00092 157 DKKEELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNL-NNNYLLIVE-WIAAYSKGD 234 (368)
T ss_pred hhHHHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhc-ccHHHHHHH-HHhhcCcCC
Confidence 345577899999999999999987678888999999999999999999999998776421 133444454 7766 46
Q ss_pred CcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCc-hhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhhh
Q 014450 292 SGRVTISAQVEAELTELPSEERVEYLASLGVSES-GLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIH 370 (424)
Q Consensus 292 ~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~-~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~IH 370 (424)
..++++|+++|.++++|++|++.+||+++|+.+| +++++++.+|++|+|++|||+|++|+||||+++|+||+||||+||
T Consensus 235 ~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IH 314 (368)
T TIGR00092 235 PKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIH 314 (368)
T ss_pred CeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcc
Confidence 6799999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 371 SDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 371 sd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|||+||||||||++|+||++|||+++||++||+|++||||+|||||||+|||||
T Consensus 315 sDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 315 TDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred cccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999997
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-89 Score=665.16 Aligned_cols=367 Identities=57% Similarity=0.894 Sum_probs=343.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccc-cccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK-SQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~-~~~~~~~~i~lvDtpG~~~ 133 (424)
|.+++||||+||||||||||||| ...+.++||||||++||.|++.+++.|++.|+++++ |.++.+..+.|+|+||+++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT-~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALT-KAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHH-cCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 56899999999999999999999 555999999999999999999999999999999999 7899999999999999999
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcch
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sa 213 (424)
|+|+|+|+||+||+++|++|+|+||||||+++++.|+.+.+||++|+++++.||++|+++.++++++++.|..+.+..-.
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~ 159 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLD 159 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876541011
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCcc---CCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhc
Q 014450 214 LKEDAEKAALEKIQQALMDGKPAR---SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (424)
Q Consensus 214 k~~~~~~~ll~~i~~~L~~~~~~~---~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~ 290 (424)
+.......++..+.++|.++.+.+ +..|++++...+++++++|.||++|++|+.+.+..+. +++.+++++++.+.
T Consensus 160 k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~--n~~~~~i~~~~~~~ 237 (372)
T COG0012 160 KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANL--NEYVKRLKELAAKE 237 (372)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccch--hHHHHHHHHHhhhc
Confidence 566667788999999999888765 3369999999999999999999999999999876543 56799999999888
Q ss_pred CCcEEEecHHhHHHHcCCCH-HHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhh
Q 014450 291 QSGRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVI 369 (424)
Q Consensus 291 ~~~~v~~sa~~e~~l~~l~~-e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~I 369 (424)
+..+||+||++|.+|.++++ +++.+|+..+|+..++|++++++.|.+|||++|||+|++|+|+||+++|+||+|+||.|
T Consensus 238 ~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~I 317 (372)
T COG0012 238 NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVI 317 (372)
T ss_pred CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCcc
Confidence 88999999999999999987 88889999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 370 HSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 370 Hsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|+||++|||+|+|++|+||+++||++.||.+|++|.+||||+|||||||+||||+
T Consensus 318 h~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 318 HPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred ccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999996
No 5
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=1.1e-84 Score=620.87 Aligned_cols=368 Identities=49% Similarity=0.778 Sum_probs=339.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
++.+++||||+||||||||||+|| +..+.++++||||++|+.+++.++|.|+|+|+.+|.|++..|+.+.++|++|+++
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT-~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALT-KSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHh-cCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 356899999999999999999999 7777799999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcc-
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS- 212 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~S- 212 (424)
++|.|+|+||.||+++|+||+|+||||||.+.++.|+++.+||++|+++++.||.+++.+.++++++++.+.......+
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~~~ 176 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKSNL 176 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776543311
Q ss_pred -hhhHHHHHHHHHHHHHHHhCCCC-ccC-CCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhh
Q 014450 213 -KLKEDAEKAALEKIQQALMDGKP-ARS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289 (424)
Q Consensus 213 -ak~~~~~~~ll~~i~~~L~~~~~-~~~-~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~ 289 (424)
-++.+-...+++.+.+.|.++.. ..+ ..|+++|.+++.+.+++|.||++|++|+++.|+.+. ++.++.++++|.++
T Consensus 177 ~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~-knk~l~~i~~w~~~ 255 (391)
T KOG1491|consen 177 ETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARK-KNKKLPKIKEWVDE 255 (391)
T ss_pred HHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhH-HHHHHhhhhhhhhc
Confidence 14444557789999998876544 344 479999999999999999999999999999888544 46678889999874
Q ss_pred --cCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhh
Q 014450 290 --LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAG 367 (424)
Q Consensus 290 --~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~ 367 (424)
.|..++|+|+.+|.++.++.+||+.+|+++.+-. +.|.++|.+.|+.|+|+.|||+||+|+|+|+|++|++|++|||
T Consensus 256 ~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~-s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~aag 334 (391)
T KOG1491|consen 256 VSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDS-SALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQAAG 334 (391)
T ss_pred cCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccc-cchhHHHHHHHHhhCceEEEeeCCchheeeehhhccccccccc
Confidence 3678999999999999999999999999999986 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 368 VIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 368 ~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
+|||||+++||.|+|+.|+||..|||+.++|.+|+.+++||+|+|+||||++||||.
T Consensus 335 vihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491|consen 335 VIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred eeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeecC
Confidence 999999999999999999999999999999999999999999999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=1.1e-60 Score=483.66 Aligned_cols=339 Identities=30% Similarity=0.437 Sum_probs=273.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeec----CCCcchhhccccc---cccccCceEEEEeCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLSK---SQKAVPASVEFVDIA 129 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~----~~~~~d~l~~~~~---~~~~~~~~i~lvDtp 129 (424)
++|||||+||||||||||+|| +..+.++++||||++|+.|++.+ ++.|+++++...+ +.+..+.+++|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt-~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT-LADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh-CCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999 55678899999999999999876 5567766544332 334667889999999
Q ss_pred CCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC---ceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhc
Q 014450 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN---DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (424)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~---~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~ 206 (424)
|++++++++++++++|++++++||+++||+|+|.+. ...+..+..||++|+++++.||.+++++.+++++.++.+..
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999643 23333788999999999999999999999999998887654
Q ss_pred cCCCcc-hhhHHHHHHHH----HHHHHHHh-CCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcch
Q 014450 207 AKDSQS-KLKEDAEKAAL----EKIQQALM-DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 280 (424)
Q Consensus 207 ~~~~~S-ak~~~~~~~ll----~~i~~~L~-~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~ 280 (424)
+.+... ..........+ +.|.++|. .|.+.+...|++++...++.+.+++.||++|++|+.+. ... +...
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~--~~~--~~~l 236 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADL--PPA--EENI 236 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhc--ccc--hHHH
Confidence 332200 01111122222 66888887 46776656799989888988888999999999999963 221 3345
Q ss_pred HHHHHHHhhcCCcEEEecHHhHHHHcC---------------------CCHHHH------HHHHHHcCCCCchhHHHH-H
Q 014450 281 NEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEER------VEYLASLGVSESGLGNLI-R 332 (424)
Q Consensus 281 ~~i~~~~~~~~~~~v~~sa~~e~~l~~---------------------l~~e~~------~~~l~~~gl~~~~l~~li-~ 332 (424)
+++.++ .+..++++||..|.++.+ ++++++ ++||+.+|+ +++++++ +
T Consensus 237 ~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~--~~~~~~i~~ 311 (396)
T PRK09602 237 ERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG--TGVQEAINT 311 (396)
T ss_pred HHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC--chHHHHHHH
Confidence 555554 355699999999998765 555442 489999998 8999999 8
Q ss_pred HHHhhcCcEEEEecCC----------CCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCC
Q 014450 333 STYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 402 (424)
Q Consensus 333 ~~~~~L~li~~fT~g~----------~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~ 402 (424)
++|++|+||+|||+++ ++.|||++++|+||+|+|++|||||+++||||+. || +
T Consensus 312 ~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--------------~~---~ 374 (396)
T PRK09602 312 AVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID--------------AR---T 374 (396)
T ss_pred HHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--------------cc---C
Confidence 9999999999999976 6778999999999999999999999999999993 33 2
Q ss_pred ccccCCCceecCCCEEEEEe
Q 014450 403 LRSEGKDYIVQEGDVMLFRF 422 (424)
Q Consensus 403 ~r~~Gkdy~v~dgDii~~~f 422 (424)
.|++|+||+|+|||||+|.-
T Consensus 375 ~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 375 KRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred CcccCCCcEecCCCEEEEEe
Confidence 46899999999999999963
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=2.4e-53 Score=409.45 Aligned_cols=274 Identities=58% Similarity=0.914 Sum_probs=252.5
Q ss_pred EEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcc
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (424)
|||||+||||||||||+|| +..+.++++||||++|+.|++.+++.|+++|+.+++|++.+++++.|+||||++++++.+
T Consensus 1 igivG~PN~GKSTLfn~Lt-~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT-KAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh-CCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999 455599999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchhhHHH
Q 014450 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDA 218 (424)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak~~~~ 218 (424)
++++++|++++++||+++||||+|+++++.|+.+.+||++|+.+++.||.+++++.++++++++.+..+... +....
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~---~~~~~ 156 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD---KEAKA 156 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc---HHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987754432 34466
Q ss_pred HHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcEEEec
Q 014450 219 EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 298 (424)
Q Consensus 219 ~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~s 298 (424)
..++++++.++|+++.+++...||++|.+.|+.+.++|.||++|++|+++.++... +...+++..++...+.++|++|
T Consensus 157 e~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~--~~~~~~~~~~~~~~~~~~i~~s 234 (274)
T cd01900 157 ELELLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANG--NNKVLKVREIAAKEGAEVIPIS 234 (274)
T ss_pred HHHHHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccc--cHHHHHHHHHHhcCCCeEEEee
Confidence 77899999999999999988789999999999999999999999999999877543 5566777777767788899999
Q ss_pred HHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhc
Q 014450 299 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338 (424)
Q Consensus 299 a~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L 338 (424)
|++|.+|++|+++++++||+++|+.+++++++++++|++|
T Consensus 235 a~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 235 AKIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=2.1e-46 Score=357.02 Aligned_cols=289 Identities=27% Similarity=0.408 Sum_probs=214.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
...+|++||+||+|||||+|+|| +..+.+++|||||+.|++|++.+.+ ++|+++|+||++++
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LT-nt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~g 123 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLT-NTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEG 123 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHh-CCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccC
Confidence 35799999999999999999999 8899999999999999999999988 89999999999999
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHH--HHhhccCCCcc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK--LKKGKAKDSQS 212 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~--i~k~~~~~~~S 212 (424)
++.+.+.|+++++.+|+||+|++|+|++.+. ..++.+..||.-..+-.- ++.+. +.+.. .+-+.
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~~------------~~~~~i~~ELe~~GIrln-k~~p~V~I~kk~-~gGI~ 189 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFEDP------------HHRDIIERELEDVGIRLN-KRPPDVTIKKKE-SGGIR 189 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCCh------------hHHHHHHHHHHhcCeEec-CCCCceEEEEec-cCCEE
Confidence 9999999999999999999999999997542 124555555543222111 11111 11111 11111
Q ss_pred hhhHHHHH-HHHHHHHHHHhCCCCccCC-----CCCHHH-HHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHH
Q 014450 213 KLKEDAEK-AALEKIQQALMDGKPARSV-----TLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 285 (424)
Q Consensus 213 ak~~~~~~-~ll~~i~~~L~~~~~~~~~-----~~t~~e-~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~ 285 (424)
...-..+. --.+.+...|.+...+... +.|.++ .+.+ ...+.++|.+|++|+.+ .+. .+.+..
T Consensus 190 i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l--~~nrvY~p~l~v~NKiD--~~~------~e~~~~ 259 (365)
T COG1163 190 INGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDAL--EGNRVYKPALYVVNKID--LPG------LEELER 259 (365)
T ss_pred EecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHH--hhcceeeeeEEEEeccc--ccC------HHHHHH
Confidence 00000111 1134556666665544432 466554 2222 23478999999999985 332 223333
Q ss_pred HHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCC----cceEEecCCCC
Q 014450 286 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE----TKAWTIRAGMT 361 (424)
Q Consensus 286 ~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e----~~aw~~~~gst 361 (424)
+.+.. .++++||... -+++++.+.+|+.|+||+|||+.|++ ..|..+++|||
T Consensus 260 l~~~~--~~v~isa~~~----------------------~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsT 315 (365)
T COG1163 260 LARKP--NSVPISAKKG----------------------INLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGST 315 (365)
T ss_pred HHhcc--ceEEEecccC----------------------CCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCc
Confidence 33222 5899998652 35689999999999999999998764 37999999999
Q ss_pred hhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 362 APQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 362 a~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
+.|+|.+||+||.+.|.||.|||.+ +|+.|+ +||.||+|+|+|||+|.
T Consensus 316 V~Dvc~~IH~~l~~~FryA~VWGkS----------vk~~~Q--rVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 316 VGDVCRKIHRDLVENFRYARVWGKS----------VKHPGQ--RVGLDHVLEDEDIVEIH 363 (365)
T ss_pred HHHHHHHHHHHHHHhcceEEEeccC----------CCCCcc--ccCcCcCccCCCeEEEe
Confidence 9999999999999999999999987 888874 79999999999999985
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=3.4e-42 Score=267.56 Aligned_cols=84 Identities=74% Similarity=1.164 Sum_probs=76.5
Q ss_pred cEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014450 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 419 (424)
Q Consensus 340 li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 419 (424)
|++|||+||+|+|||++++|+||+||||+|||||+||||+|||++|+||+++||++.||++||+|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 014450 420 FRFN 423 (424)
Q Consensus 420 ~~f~ 423 (424)
||||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=2.6e-41 Score=260.79 Aligned_cols=83 Identities=63% Similarity=1.097 Sum_probs=82.1
Q ss_pred cEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014450 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 419 (424)
Q Consensus 340 li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 419 (424)
|++|||+||+|+|||++++|+|||||||+|||||+||||+|||++|+||++|||++.||++|++|++||||+||||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 014450 420 FRF 422 (424)
Q Consensus 420 ~~f 422 (424)
|||
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 997
No 11
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=7.1e-36 Score=275.06 Aligned_cols=287 Identities=24% Similarity=0.314 Sum_probs=213.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
...+|++||+|.+|||||+..+| ...+..+.+.|||...++|.+.+.+ +.|+++|.||++++
T Consensus 61 GdaRValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieG 122 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEG 122 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhh-cchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCcccccc
Confidence 35799999999999999999999 8888999999999999999999988 77999999999999
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcc--
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS-- 212 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~S-- 212 (424)
++.+.|.|++..+..+.||+||+|+|++..+ .....++.||..-.+..-.+.....-+..+.+.+|
T Consensus 123 AsqgkGRGRQviavArtaDlilMvLDatk~e------------~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~ 190 (364)
T KOG1486|consen 123 ASQGKGRGRQVIAVARTADLILMVLDATKSE------------DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFN 190 (364)
T ss_pred cccCCCCCceEEEEeecccEEEEEecCCcch------------hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEe
Confidence 9999999999999999999999999996432 23345555544322211111111001111111122
Q ss_pred ---hhhHHHHHHHHHHHHHHHhCCCC-----ccCCCCCHHH-HHHHHHHhhhhccceEEeccccccccCCCCCCcchHHH
Q 014450 213 ---KLKEDAEKAALEKIQQALMDGKP-----ARSVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEV 283 (424)
Q Consensus 213 ---ak~~~~~~~ll~~i~~~L~~~~~-----~~~~~~t~~e-~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i 283 (424)
-.+..++.. +...|.+.+. ++..+.|.++ ...+ .....+-+++|+-|+.+ ...++++
T Consensus 191 ~T~~lT~~~ek~----i~~ILheykI~Naevl~ReD~t~DdfIDvi--~gnr~Y~~ClYvYnKID--------~vs~eev 256 (364)
T KOG1486|consen 191 TTVPLTHCDEKL----IYTILHEYKIHNAEVLFREDCTVDDFIDVI--EGNRVYIKCLYVYNKID--------QVSIEEV 256 (364)
T ss_pred eeeccccccHHH----HHHHHHHHeeccceEEEecCCChHHHHHHH--hccceEEEEEEEeeccc--------eecHHHH
Confidence 122222222 2223333333 3333566554 2333 35578889999999985 2347788
Q ss_pred HHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCC----CcceEEecCC
Q 014450 284 MNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK----ETKAWTIRAG 359 (424)
Q Consensus 284 ~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~----e~~aw~~~~g 359 (424)
..+++.++ .+++|+.+. -+++.+++.+|+.|+|.+|||+.++ -.+|.++++|
T Consensus 257 drlAr~Pn--svViSC~m~----------------------lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g 312 (364)
T KOG1486|consen 257 DRLARQPN--SVVISCNMK----------------------LNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKG 312 (364)
T ss_pred HHHhcCCC--cEEEEeccc----------------------cCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCC
Confidence 88887766 466676553 3468999999999999999999854 4589999999
Q ss_pred CChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 360 MTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 360 sta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
+|+.|+|..||.||+..|+||-|||-+ ||+. +|++|..|.+.|.|+|.|-
T Consensus 313 ~tve~~C~~iHr~l~~qfkyAlVWGtS----------akhs--PQrvgl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 313 STVEDVCHRIHRTLAAQFKYALVWGTS----------AKHS--PQRVGLGHTLEDEDVVQIV 362 (364)
T ss_pred CcHHHHHHHHHHHHHHhhceeeEeccc----------cccC--cceeccccccccccceeee
Confidence 999999999999999999999999987 7775 7799999999999999873
No 12
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=1.1e-34 Score=286.23 Aligned_cols=244 Identities=30% Similarity=0.421 Sum_probs=190.8
Q ss_pred EEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeec----CCCcchhhccccc---cccccCceEEEEeCCCC
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLSK---SQKAVPASVEFVDIAGL 131 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~----~~~~~d~l~~~~~---~~~~~~~~i~lvDtpG~ 131 (424)
|||||+||||||||||+|| +..+.++++||||++|+.|.+.+ ++.|++.++.... .......+++++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt-~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT-LADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHh-CCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 6899999999999999999 66689999999999999998875 7788888775321 11223356999999999
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCCCc---eeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK 208 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~ 208 (424)
+++++.+.+++++|++++++||+++||+|++...+ +.|+.+..||++|+++++.||.+|+.+.++++++++.+....
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~ 159 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADA 159 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999899999999999999999999999997654 478889999999999999999999999999999998866543
Q ss_pred CCcc-hhhHHHHHHHH----HHHHHHHhCCC-CccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHH
Q 014450 209 DSQS-KLKEDAEKAAL----EKIQQALMDGK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282 (424)
Q Consensus 209 ~~~S-ak~~~~~~~ll----~~i~~~L~~~~-~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~ 282 (424)
+... .....+...++ +.+.+.|.++. +.+...|++.+.+.+..+++++.||++|++|+.+ .+.+ ++..++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~D--l~~~--~~~~~~ 235 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKAD--IPDA--ENNISK 235 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHH--ccCh--HHHHHH
Confidence 3211 11223334444 77888887654 4444479988999999888899999999999996 3332 334443
Q ss_pred HHHHHhhcCCcEEEecHHhHHHHcCCC
Q 014450 283 VMNLASDLQSGRVTISAQVEAELTELP 309 (424)
Q Consensus 283 i~~~~~~~~~~~v~~sa~~e~~l~~l~ 309 (424)
+.. ......++++||..+.++.+|.
T Consensus 236 l~~--~~~~~~iI~iSA~~e~~L~~L~ 260 (318)
T cd01899 236 LRL--KYPDEIVVPTSAEAELALRRAA 260 (318)
T ss_pred HHh--hCCCCeEEEEeCcccccHHHHH
Confidence 332 2234579999999987775553
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.97 E-value=5.2e-30 Score=244.10 Aligned_cols=195 Identities=30% Similarity=0.342 Sum_probs=153.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|+|||+||||||||+|+|.|.+.+++|++|+|||....|.+..++ .|++|+||||++++.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcc
Confidence 457999999999999999999999999999999999999999999886 899999999999887
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCce--eeeccccccCC--chhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKS--DVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~--d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
+. ++.|.+.+.+.+.+||++++|||+.+...- ..+ .+.+. ..+.+ +..+++|.+... ......
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i---l~~lk~~~~pvi---l~iNKID~~~~~~~l~~~~~~~~~ 142 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI---LEQLKKTKTPVI---LVVNKIDKVKPKTVLLKLIAFLKK 142 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH---HHHHhhcCCCeE---EEEEccccCCcHHHHHHHHHHHHh
Confidence 65 777778889999999999999999874321 000 01111 11222 445555543321 122222
Q ss_pred hccCC---CcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-H----HHHHH-HHhhhhccceEEeccccccccCC
Q 014450 205 GKAKD---SQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-E----RDSIK-QLCLLTMKPIIYVANVAESDLAD 273 (424)
Q Consensus 205 ~~~~~---~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-e----~e~ir-~~~~l~~kpi~y~~nv~~~~~~~ 273 (424)
..... ++||+++.+++.|++.+.++||+|+++||.+ +||. + .|++| +++++++.++||++.|.++++.+
T Consensus 143 ~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~ 221 (298)
T COG1159 143 LLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE 221 (298)
T ss_pred hCCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence 22221 2799999999999999999999999999985 6766 2 79999 99999999999999999888754
No 14
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.96 E-value=1.6e-30 Score=240.69 Aligned_cols=284 Identities=22% Similarity=0.310 Sum_probs=208.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|+|.+|||||++.|+ +..+.++.+.|||...++|+..+.+ +.+++.|.||+++++.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~-g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT-GTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc-CCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhcccc
Confidence 589999999999999999999 7788999999999999999998876 6799999999999999
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHH--HHHHhhccCCCcchh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM--EKLKKGKAKDSQSKL 214 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~--~~i~k~~~~~~~Sak 214 (424)
.|.+.+.+..+-.|.|.+|++|+|+ ..|+....+++.||....+..-.... ....+. .+-++.
T Consensus 122 dgkgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKd--kgGInl- 186 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKD--KGGINL- 186 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCCCCccccccc--cCceee-
Confidence 9999999999999999999999998 56777777888887654433211111 011111 111111
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCC-----CCCHHHHHHHH-HHhhhhccceEEeccccccccCCCCCCcchHHHHHHHh
Q 014450 215 KEDAEKAALEKIQQALMDGKPARSV-----TLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288 (424)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~e~e~ir-~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~ 288 (424)
+ +..--++.+...+.+.+..... +-|.++ .|. --+.+.+-|.+|++|+.+. + .++++.-..+
T Consensus 187 t--~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd--LIdvVegnr~yVp~iyvLNkIds-I-------SiEELdii~~ 254 (358)
T KOG1487|consen 187 T--GTHLDLDLQRSILSEYRIHSADIALRFDATADD--LIDVVEGNRIYVPCIYVLNKIDS-I-------SIEELDIIYT 254 (358)
T ss_pred e--cchhhHHHHHHHHHHhhhcchheeeecCcchhh--hhhhhccCceeeeeeeeecccce-e-------eeeccceeee
Confidence 1 1111244455555544433321 223222 222 1234578899999998753 2 2333332221
Q ss_pred hcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCC----CcceEEecCC-CChh
Q 014450 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK----ETKAWTIRAG-MTAP 363 (424)
Q Consensus 289 ~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~----e~~aw~~~~g-sta~ 363 (424)
....||+||....+ +++++..+++.|+|+++||+.++ -..+.+++.+ +|+.
T Consensus 255 --iphavpISA~~~wn----------------------~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~ 310 (358)
T KOG1487|consen 255 --IPHAVPISAHTGWN----------------------FDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVE 310 (358)
T ss_pred --ccceeecccccccc----------------------hHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHH
Confidence 23479999987654 47899999999999999998754 3457777666 8999
Q ss_pred hhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 364 QAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 364 ~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
|+|.+||+++.+.|.||-|||-+ +|++ .+++|++|++.|.|||.|.
T Consensus 311 dfc~~ih~~~~~~fk~alvwg~s----------~kh~--pq~vg~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 311 DFCNKIHKSILKQFKYALVWGSS----------VKHN--PQRVGKEHVLEDEDVVQIV 356 (358)
T ss_pred HHHHHHHHHHHHhhhhheEeccc----------cCcC--hhhcchhheeccchhhhhc
Confidence 99999999999999999999976 7876 4689999999999999873
No 15
>COG2262 HflX GTPases [General function prediction only]
Probab=99.95 E-value=2e-28 Score=241.59 Aligned_cols=206 Identities=24% Similarity=0.322 Sum_probs=159.1
Q ss_pred CccccccccchhhhhcCCCCcchhHHHhhhcccccCCcchhh------------------------hhhhhhhhccccCC
Q 014450 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS------------------------SRRRFSSASKISMS 56 (424)
Q Consensus 1 ~v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 56 (424)
+||||||+|++|+|.+.+.++++ .++++|.+|+|+.+ .|...++.|..+.-
T Consensus 118 QVeLAqL~Y~lpRl~~~~~~l~~-----~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~ 192 (411)
T COG2262 118 QVELAQLRYELPRLVGSGSHLSR-----LGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGI 192 (411)
T ss_pred hhhHHhhhhhhhHhHhhhhhccc-----ccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 58999999999999999999884 67899999999984 22224444555667
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+.|++|||+|||||||||+|| +....+.+..|+|.+|....+.+++. .++.+.||.||+...+
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT-~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP 255 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALT-GADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLP 255 (411)
T ss_pred CeEEEEeeccccHHHHHHHHh-ccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCC
Confidence 999999999999999999999 88888999999999999999999862 5699999999998765
Q ss_pred cccchhhhh---hhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH--HHHHHhhc
Q 014450 137 QGEGLGNKF---LSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR--MEKLKKGK 206 (424)
Q Consensus 137 ~~~~~~~~~---l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~--~~~i~k~~ 206 (424)
..+...| |....+||+++||||+|++....++....+-+ .+++++ +++|++|.+... +..+....
T Consensus 256 --~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i---~v~NKiD~~~~~~~~~~~~~~~ 330 (411)
T COG2262 256 --HPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPII---LVLNKIDLLEDEEILAELERGS 330 (411)
T ss_pred --hHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEE---EEEecccccCchhhhhhhhhcC
Confidence 5666666 55667899999999999985433322222222 334455 568888866542 34454443
Q ss_pred c-CCCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 207 A-KDSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 207 ~-~~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
+ .-.+||+++.+++.|++.|.+.++..
T Consensus 331 ~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 2 11279999999999999999999754
No 16
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=5.1e-24 Score=206.73 Aligned_cols=195 Identities=23% Similarity=0.151 Sum_probs=141.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|+||||||||+|+|+|...+.++++|+||++...|....++ .++.|+||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 6999999999999999999988888999999999998888876654 67999999999765432
Q ss_pred -ccchhhhhhhhhhccceEEEEeecCCCCcee-eeccccccCCchhhhhhhhhcccHHHHHH-----HHHHHHhhccC--
Q 014450 138 -GEGLGNKFLSHIREVDSILQVVRCFEDNDIV-HVNGKVDPKSDVDVINLELVFSDLDQIEK-----RMEKLKKGKAK-- 208 (424)
Q Consensus 138 -~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~-~~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~k~~~~-- 208 (424)
.+.+...+...+++||++++|+|++...... .+...... ...+.+ +++|++|.+.+ ....+......
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~-~~~p~i---lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 140 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQN-LKRPVV---LTRNKLDNKFKDKLLPLIDKYAILEDFKD 140 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHh-cCCCEE---EEEECeeCCCHHHHHHHHHHHHhhcCCCc
Confidence 2334456678889999999999998653321 00000000 011222 34555554322 11112111111
Q ss_pred -CCcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-----HHHHHH-HHhhhhccceEEeccccccccCC
Q 014450 209 -DSQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLAD 273 (424)
Q Consensus 209 -~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----e~e~ir-~~~~l~~kpi~y~~nv~~~~~~~ 273 (424)
-.+||+++.|++++++.+.+.+|+++++||.+ +|+. ..|++| +++..+++++||.+.+..+.|.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 23799999999999999999999999999874 5654 279999 88899999999999998887753
No 17
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=6.1e-25 Score=225.14 Aligned_cols=205 Identities=21% Similarity=0.255 Sum_probs=139.1
Q ss_pred CccccccccchhhhhcCCCCcchhHHHhhhcccccCCcchhhh------------------------hhhhhhhccccCC
Q 014450 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSS------------------------RRRFSSASKISMS 56 (424)
Q Consensus 1 ~v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~ 56 (424)
+||||+|+|++|+|.+.+.++.+ +++++|.+|+|+.+- +...+..|.....
T Consensus 123 qvelA~l~y~~prl~~~~~~l~~-----~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~ 197 (426)
T PRK11058 123 QVELAQLRHLATRLVRGWTHLER-----QKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADV 197 (426)
T ss_pred HHHHHhhhhhhhhhhccccchhh-----hcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCC
Confidence 58999999999999998887665 678889999998740 0001111222234
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|||+||||||||||+|++... .+++.||+|+++..+.+.+++. ..+.++||||+++..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~-~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp 260 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLP 260 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCC
Confidence 7999999999999999999995554 4889999999999988877651 3689999999965422
Q ss_pred cccchhh---hhhhhhhccceEEEEeecCCCCceeeec---ccccc--CCchhhhhhhhhcccHHHHHHHHHHHHhh-cc
Q 014450 137 QGEGLGN---KFLSHIREVDSILQVVRCFEDNDIVHVN---GKVDP--KSDVDVINLELVFSDLDQIEKRMEKLKKG-KA 207 (424)
Q Consensus 137 ~~~~~~~---~~l~~i~~aD~il~Vvda~~~~~~~~~~---~~~dp--~~d~~~i~~el~~~~~~~i~~~~~~i~k~-~~ 207 (424)
..+.. ..+..++.||++++|+|++++....++. ..... ..+.+++ +++|++|........+... ..
T Consensus 261 --~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI---iV~NKiDL~~~~~~~~~~~~~~ 335 (426)
T PRK11058 261 --HDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL---LVMNKIDMLDDFEPRIDRDEEN 335 (426)
T ss_pred --HHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE---EEEEcccCCCchhHHHHHHhcC
Confidence 22222 3456688999999999998865322110 00000 0123333 5677777653211111111 11
Q ss_pred C---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 208 K---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 ~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
. ..+||+++.+++++++.+.+.+..
T Consensus 336 ~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 336 KPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 1 127999999999999999988853
No 18
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=8.8e-23 Score=204.08 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=143.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||||||||+|+|+|...+.+++.++||++...+.+..++ .++.||||||+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVILYDTPGIFEPK 114 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEEEEECCCcCCCc
Confidence 469999999999999999999988888899999999999989888776 679999999997543
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHHHHH----HHHhhcc-
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEKRME----KLKKGKA- 207 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~----~i~k~~~- 207 (424)
+. ...+.+.++..++.||++++|+|+++...-. .+....... ....+ ++.|++|...+... .+.....
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~~p~I---lViNKiDl~~~~~~~~~~~l~~~~~~ 190 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-NIVPI---FLLNKIDIESKYLNDIKAFLTENHPD 190 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-CCCEE---EEEEhhcCccccHHHHHHHHHhcCCC
Confidence 32 3345556667789999999999986532110 000000000 01111 34566654332111 1221111
Q ss_pred --CCCcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-H----HHHHH-HHhhhhccceEEeccccccccCC
Q 014450 208 --KDSQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-E----RDSIK-QLCLLTMKPIIYVANVAESDLAD 273 (424)
Q Consensus 208 --~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-e----~e~ir-~~~~l~~kpi~y~~nv~~~~~~~ 273 (424)
...+||+++.|++++++.+.+.+++|+|+||.+ +||. + .|++| +++..+++++||++.+..+.|.+
T Consensus 191 ~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~ 265 (339)
T PRK15494 191 SLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWED 265 (339)
T ss_pred cEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEE
Confidence 123799999999999999999999999999974 6666 2 79999 99999999999999999887764
No 19
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.1e-22 Score=210.04 Aligned_cols=171 Identities=32% Similarity=0.488 Sum_probs=123.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+|||+||||||||+|+|+ .....++++||||++|+.|.+...+ .++.|+||||+++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls-~akpkIadypfTTl~P~lGvv~~~~-----------------~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALS-AAKPKIADYPFTTLVPNLGVVQAGD-----------------TRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHh-cCCccccccCcccccceEEEEEECC-----------------eEEEEEECCCCcccc
Confidence 4799999999999999999999 5667789999999999999998876 679999999999999
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak~ 215 (424)
+.+.+++..|+.+++.||+|+||||+++.. ...+|+.++..+..||.
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~--------------------------- 267 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELA--------------------------- 267 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHH---------------------------
Confidence 888899999999999999999999996421 01244444443322211
Q ss_pred HHHHHHHHHHHHHHHhC-CCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014450 216 EDAEKAALEKIQQALMD-GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (424)
Q Consensus 216 ~~~~~~ll~~i~~~L~~-~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (424)
.+.+. .. +.. +..+..+|+++++||.| .++. .+..+.+...+...+.++
T Consensus 268 ------------~y~~~l~~---~~~-----------~~~l~~kP~IVVlNKiD--L~da--~el~e~l~~~l~~~g~~V 317 (500)
T PRK12296 268 ------------AYAPALDG---DLG-----------LGDLAERPRLVVLNKID--VPDA--RELAEFVRPELEARGWPV 317 (500)
T ss_pred ------------Hhhhcccc---cch-----------hhhhcCCCEEEEEECcc--chhh--HHHHHHHHHHHHHcCCeE
Confidence 11100 00 000 11246799999999985 4432 333444554444557889
Q ss_pred EEecHHhHHHHcC
Q 014450 295 VTISAQVEAELTE 307 (424)
Q Consensus 295 v~~sa~~e~~l~~ 307 (424)
+++||.....+.+
T Consensus 318 f~ISA~tgeGLdE 330 (500)
T PRK12296 318 FEVSAASREGLRE 330 (500)
T ss_pred EEEECCCCCCHHH
Confidence 9999987655533
No 20
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=3e-22 Score=203.15 Aligned_cols=174 Identities=27% Similarity=0.424 Sum_probs=125.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
..|+|||+||||||||+|+|+ +..+.++++||||+.|+.|++..++ ..+++|+||||++++++
T Consensus 160 adValVG~PNaGKSTLln~Lt-~~k~~vs~~p~TT~~p~~Giv~~~~----------------~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDD----------------ERSFVVADIPGLIEGAS 222 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-CCcccccCCCCCccCcEEEEEEeCC----------------CcEEEEEeCCCcccccc
Confidence 589999999999999999999 5567999999999999999998865 13499999999999988
Q ss_pred cccchhhhhhhhhhccceEEEEeecCC---CCcee---eecc---ccc-cCCchhhhhhhhhcccHHHHHH-----HHHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFE---DNDIV---HVNG---KVD-PKSDVDVINLELVFSDLDQIEK-----RMEK 201 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~---~~~~~---~~~~---~~d-p~~d~~~i~~el~~~~~~~i~~-----~~~~ 201 (424)
.+.+++..|+.+++.||++++|+|++. ..... .+.. ... .+.+.+.+ +++|++|...+ .+..
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~I---lVlNKiDl~~~~el~~~l~~ 299 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRW---LVFNKIDLLDEEEAEERAKA 299 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEE---EEEeCCccCChHHHHHHHHH
Confidence 888899999999999999999999872 11110 0000 000 00111222 34566654322 2222
Q ss_pred HHhhccC----CCcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHHH-----HHHHH
Q 014450 202 LKKGKAK----DSQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDFE-----RDSIK 250 (424)
Q Consensus 202 i~k~~~~----~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~e-----~e~ir 250 (424)
+.+.... ..+||+++.++.++++.|.+.+++++++||.+ +|+.. .|++|
T Consensus 300 l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiR 358 (390)
T PRK12298 300 IVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHR 358 (390)
T ss_pred HHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHH
Confidence 2222111 13799999999999999999999999998864 56552 45555
No 21
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.88 E-value=9.8e-23 Score=196.70 Aligned_cols=154 Identities=36% Similarity=0.546 Sum_probs=121.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...||+||+||||||||+|+++ .....+++|||||+.|+.|++.+.+ ...+++-|+||+++++
T Consensus 159 lADVGLVG~PNaGKSTlls~vS-~AkPKIadYpFTTL~PnLGvV~~~~----------------~~sfv~ADIPGLIEGA 221 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVS-AAKPKIADYPFTTLVPNLGVVRVDG----------------GESFVVADIPGLIEGA 221 (369)
T ss_pred ecccccccCCCCcHHHHHHHHh-hcCCcccCCccccccCcccEEEecC----------------CCcEEEecCccccccc
Confidence 3589999999999999999999 9999999999999999999998744 2569999999999999
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhh--------------cccHHHH--HHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELV--------------FSDLDQI--EKRM 199 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~--------------~~~~~~i--~~~~ 199 (424)
+.+.+++.+||.++..|-+++||||++..+. .||..++..|+.||. +|++|.. +..+
T Consensus 222 s~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~ 294 (369)
T COG0536 222 SEGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL 294 (369)
T ss_pred ccCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH
Confidence 9999999999999999999999999976532 578888888888775 4555511 1122
Q ss_pred HH----HHhhccC-CC--cchhhHHHHHHHHHHHHHHHhCC
Q 014450 200 EK----LKKGKAK-DS--QSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 200 ~~----i~k~~~~-~~--~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
+. +.+.... .. +||.++.+++.|+..+.+.+.+.
T Consensus 295 ~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 295 EELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred HHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 22 2211111 11 67888888888888777777554
No 22
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=5.7e-23 Score=206.04 Aligned_cols=203 Identities=27% Similarity=0.379 Sum_probs=133.9
Q ss_pred CccccccccchhhhhcCCCCcchhHHHhhhcccccCCcchhh------------------------hhhhhhhhccccCC
Q 014450 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS------------------------SRRRFSSASKISMS 56 (424)
Q Consensus 1 ~v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~ 56 (424)
.|++|+|+|.+|++...+.++ .+++++++..|+++.. ++...+..|.....
T Consensus 115 qv~la~l~~~l~r~~~~~~~l-----~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~ 189 (351)
T TIGR03156 115 QVELAQLKYLLPRLVGGWTHL-----SRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADV 189 (351)
T ss_pred HHHHHhccchhhhhhhhHHHH-----HhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 378999999999998765543 3456677777776631 11112222333456
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|||+||||||||+|+|++.. +.++++||+|+++..+.+.+++ ..++.|+||||++...+
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~----------------~~~i~l~DT~G~~~~l~ 252 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPD----------------GGEVLLTDTVGFIRDLP 252 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCC----------------CceEEEEecCcccccCC
Confidence 899999999999999999999554 7889999999999999988864 25699999999965432
Q ss_pred c--ccchhhhhhhhhhccceEEEEeecCCCCceeeec---cccc--cCCchhhhhhhhhcccHHHHHH-HHHHHHhh-cc
Q 014450 137 Q--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN---GKVD--PKSDVDVINLELVFSDLDQIEK-RMEKLKKG-KA 207 (424)
Q Consensus 137 ~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~---~~~d--p~~d~~~i~~el~~~~~~~i~~-~~~~i~k~-~~ 207 (424)
. .+. ...++..+++||+++||+|++++....+.. .... ...+.+++ +++|++|.... ........ .+
T Consensus 253 ~~lie~-f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piI---lV~NK~Dl~~~~~v~~~~~~~~~ 328 (351)
T TIGR03156 253 HELVAA-FRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQL---LVYNKIDLLDEPRIERLEEGYPE 328 (351)
T ss_pred HHHHHH-HHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEE---EEEEeecCCChHhHHHHHhCCCC
Confidence 1 111 234566789999999999998765322110 0000 01123333 55777776432 11111111 11
Q ss_pred CCCcchhhHHHHHHHHHHHHHH
Q 014450 208 KDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
...+||+++.|++++++.|.+.
T Consensus 329 ~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 329 AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EEEEEccCCCCHHHHHHHHHhh
Confidence 1237999999999999988654
No 23
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=2.5e-21 Score=189.81 Aligned_cols=196 Identities=29% Similarity=0.323 Sum_probs=141.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|+++|.||||||||+|+|+|...+.+++.|.||++...+....++ .++.|+||||+....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCch
Confidence 457999999999999999999998889999999999998888876544 679999999997654
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCc--eeeeccccccCCchhhhhhhhhcccHHHH------HHHHHHHHhhc
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDND--IVHVNGKVDPKSDVDVINLELVFSDLDQI------EKRMEKLKKGK 206 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~--~~~~~~~~dp~~d~~~i~~el~~~~~~~i------~~~~~~i~k~~ 206 (424)
.. ++.+.......+..+|++++|+|+++... ...+...... .+.+.+ ++++++|.+ ...+..+.+..
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~-~~~pvi---lVlNKiDl~~~~~~l~~~~~~l~~~~ 143 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK-VKTPVI---LVLNKIDLVKDKEELLPLLEELSELM 143 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh-cCCCEE---EEEECCcCCCCHHHHHHHHHHHHhhC
Confidence 32 33344556677899999999999987321 0000000000 011222 345555544 11222232222
Q ss_pred cCC---CcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-----HHHHHH-HHhhhhccceEEeccccccccC
Q 014450 207 AKD---SQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLA 272 (424)
Q Consensus 207 ~~~---~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----e~e~ir-~~~~l~~kpi~y~~nv~~~~~~ 272 (424)
... .+||+++.++.++++.+.+.+++++++|+.+ +|+. -.|++| +++..+++++||.+.+..++|.
T Consensus 144 ~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~ 219 (292)
T PRK00089 144 DFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFE 219 (292)
T ss_pred CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEE
Confidence 211 2699999999999999999999999999874 5554 278899 8889999999999999887775
No 24
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=1.9e-21 Score=184.76 Aligned_cols=223 Identities=27% Similarity=0.389 Sum_probs=141.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.||+|||||+|+|+ +....++++||+|.++..|.+.+.+ .+++++||||+.++...
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt-g~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT-NTKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCccccccc
Confidence 79999999999999999999 5556789999999999999998876 67999999999887765
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHH--HhhccCCCcchh-
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL--KKGKAKDSQSKL- 214 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i--~k~~~~~~~Sak- 214 (424)
..++..+++..++++|++++|+|+++.. +....+.+++....+ .+.+....+ .+.. .+.++..
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~------------~~~~~~~~~l~~~gi-~l~~~~~~v~~~~~~-~ggi~~~~ 129 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPE------------GHREILERELEGVGI-RLNKRPPNITIKKKK-KGGINITS 129 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcch------------hHHHHHHHHHHHcCc-eecCCCCeEEEEEEe-cCCEEEec
Confidence 5667788899999999999999996432 223333333322222 011111100 0000 0011100
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCC-----CCCHHHH-HHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHh
Q 014450 215 KEDAEKAALEKIQQALMDGKPARSV-----TLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288 (424)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~e~-e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~ 288 (424)
++.-...-.+.+...|.+...+.+. +.|.++. ..+ ...+.+.|+++++||.|. .. .+++..++.
T Consensus 130 ~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~--~~~~~y~p~iiV~NK~Dl--~~------~~~~~~~~~ 199 (233)
T cd01896 130 TVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVI--EGNRVYIPCLYVYNKIDL--IS------IEELDLLAR 199 (233)
T ss_pred cCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHH--hCCceEeeEEEEEECccC--CC------HHHHHHHhc
Confidence 0000001123444455443333331 3444331 212 234688999999999963 21 223334443
Q ss_pred hcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 289 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 289 ~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
. ..++++||.. ..+++++.+.+++.|++|+|||+
T Consensus 200 ~--~~~~~~SA~~----------------------g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 200 Q--PNSVVISAEK----------------------GLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred C--CCEEEEcCCC----------------------CCCHHHHHHHHHHHhCcEEEecC
Confidence 2 3478888764 36788999999999999999995
No 25
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.86 E-value=4.1e-22 Score=190.20 Aligned_cols=108 Identities=36% Similarity=0.618 Sum_probs=94.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...||+||+||||||||+|+|+ .....+++|+|||+.|..|.+.++| ..++.+-|+||+++++
T Consensus 196 iadvGLVG~PNAGKSTLL~als-~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALS-RAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGIIEGA 258 (366)
T ss_pred ecccceecCCCCcHHHHHHHhh-ccCCcccccceeeeccccceeeccc----------------cceeEeccCccccccc
Confidence 4789999999999999999999 8888999999999999999998887 3669999999999999
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLEL 187 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el 187 (424)
|.+.+++-.||.++..|+.+++|||++.... ..|..++..+..|+
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~EL 303 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEEL 303 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999987633 34555555554444
No 26
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.85 E-value=1.6e-21 Score=152.09 Aligned_cols=65 Identities=32% Similarity=0.443 Sum_probs=59.6
Q ss_pred cEEEEecC-----------CCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCC
Q 014450 340 LRTYFTSG-----------EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 408 (424)
Q Consensus 340 li~~fT~g-----------~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gk 408 (424)
|++|||+. +++.+||++++|+||+|+|+.||+||+++|++|+||+ .|++|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 68999854 4578999999999999999999999999999999997 468999
Q ss_pred CceecCCCEEEEEe
Q 014450 409 DYIVQEGDVMLFRF 422 (424)
Q Consensus 409 dy~v~dgDii~~~f 422 (424)
||+|+|||||+|.|
T Consensus 63 d~~l~d~DVv~i~~ 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEecCCCEEEEEC
Confidence 99999999999975
No 27
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.85 E-value=5.8e-21 Score=181.39 Aligned_cols=199 Identities=20% Similarity=0.207 Sum_probs=141.5
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
....++||+||.||||||||.|.+.|.+.+.+|.++.||+..+.|++.-++ .|++|+||||++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlv 131 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLV 131 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCccc
Confidence 345689999999999999999999999999999999999999999998887 899999999998
Q ss_pred CCCCc-ccchh----hhhhhhhhccceEEEEeecCCCCcee-----------------eeccccccCCchhhhhhhhhcc
Q 014450 133 KGASQ-GEGLG----NKFLSHIREVDSILQVVRCFEDNDIV-----------------HVNGKVDPKSDVDVINLELVFS 190 (424)
Q Consensus 133 ~~~~~-~~~~~----~~~l~~i~~aD~il~Vvda~~~~~~~-----------------~~~~~~dp~~d~~~i~~el~~~ 190 (424)
..... ...+. ...+.++..||+++.|+|+++.-... .+.|+.|.+.....+ +.
T Consensus 132 s~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~L-----l~ 206 (379)
T KOG1423|consen 132 SKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLL-----LN 206 (379)
T ss_pred ccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHH-----hh
Confidence 65432 22332 24466788999999999998532211 122333333221111 10
Q ss_pred cHHHH-----HH-HHHHHHhh--cc----------C-C-----CcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-
Q 014450 191 DLDQI-----EK-RMEKLKKG--KA----------K-D-----SQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF- 244 (424)
Q Consensus 191 ~~~~i-----~~-~~~~i~k~--~~----------~-~-----~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~- 244 (424)
..+.+ .. .++.-++. .+ . + .+||++|.++.++.+.+...++.|+|.|+.+ .|++
T Consensus 207 l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 207 LKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred hHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence 00000 00 01100100 11 0 0 1599999999999999999999999999975 4544
Q ss_pred -H---HHHHH-HHhhhhccceEEeccccccccCC
Q 014450 245 -E---RDSIK-QLCLLTMKPIIYVANVAESDLAD 273 (424)
Q Consensus 245 -e---~e~ir-~~~~l~~kpi~y~~nv~~~~~~~ 273 (424)
+ .+++| +++..+..++||.+.+...+|.+
T Consensus 287 ~e~l~~e~VReklLd~~pqEVPY~lq~~i~~w~e 320 (379)
T KOG1423|consen 287 PEFLCSESVREKLLDHLPQEVPYNLQVRILSWKE 320 (379)
T ss_pred HHHHHHHHHHHHHHhhCccccCcceEEEEEEeee
Confidence 2 68888 88888999999999887776653
No 28
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.9e-21 Score=195.50 Aligned_cols=168 Identities=24% Similarity=0.257 Sum_probs=128.1
Q ss_pred hhhhhhhhhccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 42 ~~~~~~~~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
.......+++..+.+++++|+|+||||||||+|+|++.+.++|++.|+||||.....+.+.+ .
T Consensus 203 ~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G-----------------~ 265 (454)
T COG0486 203 ELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG-----------------I 265 (454)
T ss_pred HHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC-----------------E
Confidence 34455667788888999999999999999999999999999999999999999999999987 7
Q ss_pred eEEEEeCCCCCCCCCcccchh-hhhhhhhhccceEEEEeecCCCCc---eeeeccccccCCchhhhhhhhhcccHHHHHH
Q 014450 122 SVEFVDIAGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~ 197 (424)
.+.++||+|+.+....-+..| ++.+..+++||++|+|+|++++.. ..... .. ....+.+ +++||.|...+
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~--~~~~~~i---~v~NK~DL~~~ 339 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LL--PKKKPII---VVLNKADLVSK 339 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hc--ccCCCEE---EEEechhcccc
Confidence 799999999987777677776 788999999999999999988521 11110 00 0111122 45777776665
Q ss_pred HH-HHHHhhccC---CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 198 RM-EKLKKGKAK---DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 198 ~~-~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
.. ..+ +.... -.+|++++.+++.|.+.+.+.+...
T Consensus 340 ~~~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 340 IELESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cccchh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 22 222 22222 1269999999999999999988654
No 29
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=4.2e-20 Score=184.00 Aligned_cols=91 Identities=46% Similarity=0.782 Sum_probs=82.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|+|||+||||||||+|+|+ ...+.++++||||++|+.|.+.+++ ..++.++||||+++++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls-~a~~~va~ypfTT~~p~~G~v~~~~----------------~~~~~i~D~PGli~ga 220 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLHPNLGVVRVDD----------------YKSFVIADIPGLIEGA 220 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHH-cCCCccCCCCCceeCceEEEEEeCC----------------CcEEEEEeCCCccCCC
Confidence 4789999999999999999999 5667899999999999999998754 1569999999999999
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
+.+.+++..|+.+++.||+++||+|+++
T Consensus 221 ~~~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 221 SEGAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred CccccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 9888999999999999999999999864
No 30
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=2e-20 Score=191.04 Aligned_cols=159 Identities=34% Similarity=0.523 Sum_probs=115.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
..|+|||+||||||||+|+|+ +..+.++++||||+.|+.|.+.+++ ..++.|+||||++++++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt-~ak~kIa~ypfTTl~PnlG~v~~~~----------------~~~~~laD~PGliega~ 221 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVS-NAKPKIANYHFTTLVPNLGVVETDD----------------GRSFVMADIPGLIEGAS 221 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHH-cCCCccccCCcceeceEEEEEEEeC----------------CceEEEEECCCCccccc
Confidence 599999999999999999999 6667789999999999999988763 15699999999999988
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCC---cee---eec---ccccc-CCchhhhhhhhhcccHHHHH--HHHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN---DIV---HVN---GKVDP-KSDVDVINLELVFSDLDQIE--KRMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~---~~~---~~~---~~~dp-~~d~~~i~~el~~~~~~~i~--~~~~~i~k 204 (424)
.+.+++..|+.+++.||+++||+|+++.. .+. .+. ...++ +.+.+.+ +++|++|..+ ..+..+.+
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~I---VV~NK~DL~~~~e~l~~l~~ 298 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQI---VVANKMDLPEAEENLEEFKE 298 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEE---EEEeCCCCcCCHHHHHHHHH
Confidence 88899999999999999999999997531 100 000 00011 1122222 3456666321 12222322
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHHhCCCC
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQALMDGKP 235 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L~~~~~ 235 (424)
.... ..+||+++.+++++++.+.+.+.+.+.
T Consensus 299 ~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 299 KLGPKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred HhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 2211 136999999999999999999876543
No 31
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=1.1e-20 Score=167.70 Aligned_cols=147 Identities=29% Similarity=0.404 Sum_probs=98.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||||+|||.. +.++++|++|++...|.+...+ .++.|+||||+....+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCC
Confidence 379999999999999999999554 8899999999999999999876 7799999999876443
Q ss_pred c--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-----HHHHHHhhccCC
Q 014450 137 Q--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-----RMEKLKKGKAKD 209 (424)
Q Consensus 137 ~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~k~~~~~ 209 (424)
. .+.+...++. ....|++++|+|++.-..-..+....-. ..++++ +++|++|..++ ....+.+.....
T Consensus 63 ~s~ee~v~~~~l~-~~~~D~ii~VvDa~~l~r~l~l~~ql~e-~g~P~v---vvlN~~D~a~~~g~~id~~~Ls~~Lg~p 137 (156)
T PF02421_consen 63 KSEEERVARDYLL-SEKPDLIIVVVDATNLERNLYLTLQLLE-LGIPVV---VVLNKMDEAERKGIEIDAEKLSERLGVP 137 (156)
T ss_dssp SSHHHHHHHHHHH-HTSSSEEEEEEEGGGHHHHHHHHHHHHH-TTSSEE---EEEETHHHHHHTTEEE-HHHHHHHHTS-
T ss_pred CCcHHHHHHHHHh-hcCCCEEEEECCCCCHHHHHHHHHHHHH-cCCCEE---EEEeCHHHHHHcCCEECHHHHHHHhCCC
Confidence 3 3444444444 3679999999999764321100000000 112333 45788888776 233444443221
Q ss_pred --CcchhhHHHHHHHHHHH
Q 014450 210 --SQSKLKEDAEKAALEKI 226 (424)
Q Consensus 210 --~~Sak~~~~~~~ll~~i 226 (424)
.+||+++.++++|++.|
T Consensus 138 vi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHhhC
Confidence 26899999999988765
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.2e-20 Score=189.25 Aligned_cols=154 Identities=27% Similarity=0.261 Sum_probs=111.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC-
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA- 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~- 135 (424)
+.|+|||+||||||||||+|+|...+.|+++|++|+|+..+...+.+ ..+.++||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC-----------------ceEEEEECCCCCcCCc
Confidence 68999999999999999999999999999999999999999988876 669999999998655
Q ss_pred -CcccchhhhhhhhhhccceEEEEeecCCCCce--eeeccccccCCchhhhhhhhhcccHHHHHHH---HHHHHhhcc-C
Q 014450 136 -SQGEGLGNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKA-K 208 (424)
Q Consensus 136 -~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~---~~~i~k~~~-~ 208 (424)
...+.+..+++.++.+||++|+|||+.....- ..+....- ..+.+++ |+.|++|..+.. .++..--.. .
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpvi---LvvNK~D~~~~e~~~~efyslG~g~~ 142 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVI---LVVNKIDNLKAEELAYEFYSLGFGEP 142 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEE---EEEEcccCchhhhhHHHHHhcCCCCc
Confidence 33566778999999999999999998653210 00000000 0112223 456676654221 112111110 1
Q ss_pred CCcchhhHHHHHHHHHHHHHHHh
Q 014450 209 DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 209 ~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..+||..|.++.+|++.+.+.+|
T Consensus 143 ~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 VPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred eEeehhhccCHHHHHHHHHhhcC
Confidence 13799999999999999999984
No 33
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.81 E-value=1.6e-19 Score=179.66 Aligned_cols=91 Identities=45% Similarity=0.783 Sum_probs=82.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|+|||+||||||||+|+|+ .....++++||||+.|+.|.+.+++ ..++.|+||||+++++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt-~~~~~va~y~fTT~~p~ig~v~~~~----------------~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVIADIPGLIEGA 219 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHh-cCCccccCCCCCccCCEEEEEEeCC----------------ceEEEEEeCCCcccCC
Confidence 4799999999999999999999 6667899999999999999998764 2569999999999998
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
+...+++..|+.+++.||++++|+|+++
T Consensus 220 ~~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 220 SEGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred cccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 8888899999999999999999999854
No 34
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.72 E-value=1.1e-17 Score=173.24 Aligned_cols=163 Identities=21% Similarity=0.225 Sum_probs=113.5
Q ss_pred hhccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeC
Q 014450 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (424)
Q Consensus 49 ~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDt 128 (424)
+++....+++|+++|+||||||||+|+|++...+.+++.|+||+++....+.+++ ..+.++||
T Consensus 208 ~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~i~l~DT 270 (449)
T PRK05291 208 QGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDT 270 (449)
T ss_pred HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-----------------eEEEEEeC
Confidence 3344456789999999999999999999987778899999999999988887765 56899999
Q ss_pred CCCCCCCCcccchh-hhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhcc
Q 014450 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA 207 (424)
Q Consensus 129 pG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~ 207 (424)
||+.++....+..+ ...+..+++||++++|+|++++........... ..+.+++ +++||.|.............+
T Consensus 271 ~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~~~~pii---iV~NK~DL~~~~~~~~~~~~~ 346 (449)
T PRK05291 271 AGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-LKDKPVI---VVLNKADLTGEIDLEEENGKP 346 (449)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-cCCCCcE---EEEEhhhccccchhhhccCCc
Confidence 99965433222222 345678899999999999987643211100000 1233344 668888865432211000001
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
...+||+++.+++++++.+.+.++.
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 1137999999999999999998864
No 35
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.71 E-value=1.3e-17 Score=149.22 Aligned_cols=153 Identities=35% Similarity=0.602 Sum_probs=102.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|++||+||||||||+|+|++ ....++.+|++|+++..+.+..++ ...+.|+||||+......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~-~~~~v~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVVADIPGLIEGASE 64 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc-CCccccCCCccccCCcceEEEcCC----------------CCeEEEEecCcccCcccc
Confidence 699999999999999999994 455788899999999999887665 137999999999755444
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCC-Cceeeeccc------ccc-CCchhhhhhhhhcccHHHHHHH-----HHH-HH
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFED-NDIVHVNGK------VDP-KSDVDVINLELVFSDLDQIEKR-----MEK-LK 203 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~-~~~~~~~~~------~dp-~~d~~~i~~el~~~~~~~i~~~-----~~~-i~ 203 (424)
.+.+...++..++.||++++|+|+++. ......... ..+ ....+.+ ++.++.|...+. ... ..
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~i---vv~NK~Dl~~~~~~~~~~~~~~~ 141 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRI---VVLNKIDLLDEEELFELLKELLK 141 (170)
T ss_pred cCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccE---EEEEchhcCCchhhHHHHHHHHh
Confidence 445667888888899999999999876 221111000 000 1122222 445666643321 111 11
Q ss_pred hh--ccCCCcchhhHHHHHHHHHHHHHHH
Q 014450 204 KG--KAKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 204 k~--~~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+. .....+||+++.++.++++.+.+.|
T Consensus 142 ~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 142 ELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred hCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 11 0111268999999999988877543
No 36
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.69 E-value=3.9e-17 Score=126.75 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=63.3
Q ss_pred cEEEEecCCC----CcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCC
Q 014450 340 LRTYFTSGEK----ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 415 (424)
Q Consensus 340 li~~fT~g~~----e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dg 415 (424)
|++|||+.++ ..++.++++|+|+.|+|.+||+|+.+.|++|.||+-+ ++..| |++|.||+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s----------~~~~g--q~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSS----------VKHSP--QRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccC----------CcCCC--eECCCCCEecCC
Confidence 6899999865 4689999999999999999999999999999999965 66666 479999999999
Q ss_pred CEEEEE
Q 014450 416 DVMLFR 421 (424)
Q Consensus 416 Dii~~~ 421 (424)
|||+|-
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
No 37
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=158.12 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=107.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
.+.+|||||+||+|||||+|+|+|+..+.+++.|+||+|++...+...+ ..+.|+||+|+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-----------------~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-----------------RKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------eEEEEEECCCCCcc
Confidence 4699999999999999999999999999999999999999999998877 66999999999765
Q ss_pred CCccc---ch-hhhhhhhhhccceEEEEeecCCCCce------eeeccccccCCchhhhhhhhhcccHHHHH--------
Q 014450 135 ASQGE---GL-GNKFLSHIREVDSILQVVRCFEDNDI------VHVNGKVDPKSDVDVINLELVFSDLDQIE-------- 196 (424)
Q Consensus 135 ~~~~~---~~-~~~~l~~i~~aD~il~Vvda~~~~~~------~~~~~~~dp~~d~~~i~~el~~~~~~~i~-------- 196 (424)
..-.+ .+ ..+++.++..||++++|+||+++..- -.+.....++ + ++.|++|.++
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~-----v---IvvNKWDl~~~~~~~~~~ 311 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGI-----V---IVVNKWDLVEEDEATMEE 311 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCe-----E---EEEEccccCCchhhHHHH
Confidence 43222 22 25778899999999999999886431 0000000010 0 1123332222
Q ss_pred --HHHHHHHhhccCC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 197 --KRMEKLKKGKAKD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 197 --~~~~~i~k~~~~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+.+.+.-...... .+||+++.++..+++.+.+....
T Consensus 312 ~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 312 FKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred HHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHH
Confidence 1222111111122 27999999999999999888864
No 38
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.1e-16 Score=135.14 Aligned_cols=88 Identities=38% Similarity=0.494 Sum_probs=74.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.||||||||+|+|++...+.+++.+++|+.+..+.+.+.+ ..+.|+||||+.++...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-----------------KKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-----------------EEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-----------------eeEEEEeCCCCcccchh
Confidence 6999999999999999999977788999999999999887777765 66899999999876544
Q ss_pred cc--chhhhhhhhhhccceEEEEeecC
Q 014450 138 GE--GLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 138 ~~--~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.. .....++..++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDAS 90 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECC
Confidence 22 24456888889999999999974
No 39
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.68 E-value=3.3e-17 Score=156.90 Aligned_cols=146 Identities=23% Similarity=0.258 Sum_probs=102.6
Q ss_pred ccccccccchhhhhcCCCCcchhHHHhhhc------------cc----ccCCcch-hhhhhh-hhhhccccCCcEEEEEe
Q 014450 2 VRTAACNYLIPALTLLPKPMESSLFTRNAN------------LI----GVLGITT-TSSRRR-FSSASKISMSLRAGIVG 63 (424)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~------------~~----~~~~~~~-~~~~~~-~~~~~~~~~~~~I~ivG 63 (424)
|-+|++-|..++|..++.+..++.-.+..+ +. +.+.+.. ..++.+ .+.++.....+-|++||
T Consensus 106 valAempy~~~rl~r~~~hl~r~~g~~v~gsges~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pviavVG 185 (410)
T KOG0410|consen 106 VALAEMPYVGGRLERELQHLRRQSGGQVKGSGESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPVIAVVG 185 (410)
T ss_pred hhhhcCccccchHHHHHHHHHhcCCCcccCccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCceEEEEe
Confidence 567899999999987665555422111000 00 0000000 012222 22344455678999999
Q ss_pred cCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcccchhh
Q 014450 64 LPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143 (424)
Q Consensus 64 ~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~ 143 (424)
|+|+|||||+|+|| .......+..|.|.||.......|.. ..+.|.||-||+...+ .++..
T Consensus 186 YTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDTvGFisdLP--~~Lva 246 (410)
T KOG0410|consen 186 YTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDTVGFISDLP--IQLVA 246 (410)
T ss_pred ecCccHHHHHHHHH-hhhcCccchhheeccchhhhccCCCC----------------cEEEEeechhhhhhCc--HHHHH
Confidence 99999999999999 77777888999999999988888873 5699999999987665 45554
Q ss_pred hh---hhhhhccceEEEEeecCCCCc
Q 014450 144 KF---LSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 144 ~~---l~~i~~aD~il~Vvda~~~~~ 166 (424)
.| |.++.+||+|+||+|.|++..
T Consensus 247 AF~ATLeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 247 AFQATLEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccH
Confidence 44 777889999999999998764
No 40
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=1.8e-16 Score=153.73 Aligned_cols=225 Identities=16% Similarity=0.198 Sum_probs=132.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCC-----ccccC------------CCCccccceEEEeecCCCcchhhccccccccccC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGK-----AQAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~-----~~~s~------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
+|+|+|++|+|||||+|+|+.... ..+.+ ..++|++.....+.+. .
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~-----------------~ 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWK-----------------D 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEEC-----------------C
Confidence 589999999999999999973211 11111 2234444444444433 4
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HH
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RM 199 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~ 199 (424)
.++.|+||||..+ +.......++.+|++++|+|+.+... . .++..+..+..... .+
T Consensus 64 ~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVVDa~~g~~------------~----~t~~~~~~~~~~~~p~i 120 (270)
T cd01886 64 HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVAGVE------------P----QTETVWRQADRYNVPRI 120 (270)
T ss_pred EEEEEEECCCcHH-------HHHHHHHHHHHcCEEEEEEECCCCCC------------H----HHHHHHHHHHHcCCCEE
Confidence 7899999999853 33467788999999999999964311 0 00000000000000 00
Q ss_pred HHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEec---c-ccccccCCC
Q 014450 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA---N-VAESDLADP 274 (424)
Q Consensus 200 ~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~---n-v~~~~~~~~ 274 (424)
..++|+ + ..+.....+++.+.+.+.. ...+..++..+...++ -+.+++.+.+.|.- . ..+.++|
T Consensus 121 vviNK~----D---~~~a~~~~~~~~l~~~l~~--~~~~~~~Pisa~~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip-- 189 (270)
T cd01886 121 AFVNKM----D---RTGADFFRVVEQIREKLGA--NPVPLQLPIGEEDDFRGVVDLIEMKALYWDGELGEKIEETEIP-- 189 (270)
T ss_pred EEEECC----C---CCCCCHHHHHHHHHHHhCC--CceEEEeccccCCCceEEEEccccEEEecccCCCceeEEecCC--
Confidence 001111 1 1122344567777777733 2222222222222233 23455666666611 0 1222333
Q ss_pred CCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 275 GSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 275 ~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
.+..+.++++ ...+-+.+++.|++.+++||++..++...+.+.+++++....++|||-.
T Consensus 190 --~~~~~~~~~~-----------r~~l~e~vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~~~~~PV~~g 248 (270)
T cd01886 190 --EDLLEEAEEA-----------REELIETLAEFDDELMEKYLEGEEITEEEIKAAIRKGTIANKIVPVLCG 248 (270)
T ss_pred --HHHHHHHHHH-----------HHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHcCcEEEEEeC
Confidence 3344555554 4556678899999999999999999999999999999999999999963
No 41
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.64 E-value=5.1e-16 Score=162.55 Aligned_cols=166 Identities=25% Similarity=0.346 Sum_probs=116.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC--
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK-- 133 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~-- 133 (424)
..+||++|.||+|||||||+|| +....++|+|++|.+...|.+...+ .++.++|+||...
T Consensus 3 ~~~valvGNPNvGKTtlFN~LT-G~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL~ 64 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALT-GANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSLT 64 (653)
T ss_pred cceEEEecCCCccHHHHHHHHh-ccCceecCCCCeeEEEEEEEEEecC-----------------ceEEEEeCCCcCCCC
Confidence 3569999999999999999999 8889999999999999999998887 6699999999974
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
..+.+|.....|+.. ..+|+++.|+||++-+.-....-..- .-.++.+ +.+|.+|..+++ .+++++....
T Consensus 65 ~~S~DE~Var~~ll~-~~~D~ivnVvDAtnLeRnLyltlQLl-E~g~p~i---laLNm~D~A~~~Gi~ID~~~L~~~LGv 139 (653)
T COG0370 65 AYSEDEKVARDFLLE-GKPDLIVNVVDATNLERNLYLTLQLL-ELGIPMI---LALNMIDEAKKRGIRIDIEKLSKLLGV 139 (653)
T ss_pred CCCchHHHHHHHHhc-CCCCEEEEEcccchHHHHHHHHHHHH-HcCCCeE---EEeccHhhHHhcCCcccHHHHHHHhCC
Confidence 334566666777663 56899999999976543100000000 0011122 447777776662 2334444322
Q ss_pred C--CcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHH
Q 014450 209 D--SQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDF 244 (424)
Q Consensus 209 ~--~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~ 244 (424)
. +.||+++.+++++++.+.+..+.+...+..+++.+
T Consensus 140 PVv~tvA~~g~G~~~l~~~i~~~~~~~~~~~~~~y~~~ 177 (653)
T COG0370 140 PVVPTVAKRGEGLEELKRAIIELAESKTTPREVDYGEE 177 (653)
T ss_pred CEEEEEeecCCCHHHHHHHHHHhccccccccccccchH
Confidence 1 25899999999999999988876554222344433
No 42
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.64 E-value=1.7e-16 Score=142.30 Aligned_cols=86 Identities=58% Similarity=1.009 Sum_probs=72.5
Q ss_pred EEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecC-CCcchhhccccccccccCceEEEEeCCCCCCCCCccc
Q 014450 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (424)
Q Consensus 61 ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~-~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (424)
|+|.||||||||+|+|++... .+++++++|++++.+.+.++ + .++.++||||+.+.....+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDG-----------------ARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCC-----------------CeEEEEeccccchhhhcCC
Confidence 589999999999999996554 77889999999999888776 4 6699999999976555455
Q ss_pred chhhhhhhhhhccceEEEEeecCCC
Q 014450 140 GLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 140 ~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+...++..++.+|++++|+|+++.
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCC
Confidence 6666788889999999999999876
No 43
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.63 E-value=5.5e-16 Score=149.59 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=75.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..+.|.|.|+||||||||+++|| .....+++|||||...+.|.+..+. .+++++||||+.+.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT-~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT-TAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh-cCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCC
Confidence 46899999999999999999999 8899999999999999999998876 56999999999754
Q ss_pred C-Ccccchhhhhhhhhhc-cceEEEEeecCCCC
Q 014450 135 A-SQGEGLGNKFLSHIRE-VDSILQVVRCFEDN 165 (424)
Q Consensus 135 ~-~~~~~~~~~~l~~i~~-aD~il~Vvda~~~~ 165 (424)
. .+-...-.+...++++ +++|+|++|.|...
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~c 261 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSETC 261 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCcccc
Confidence 3 2222233444445554 68899999998754
No 44
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=6.5e-16 Score=155.44 Aligned_cols=97 Identities=31% Similarity=0.428 Sum_probs=84.3
Q ss_pred hhhccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEe
Q 014450 48 SSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (424)
Q Consensus 48 ~~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvD 127 (424)
......+.+++|+|+|+||||||||+|+|+..+.++|++.|+||+|.....+++.+ ..+.|+|
T Consensus 260 ~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-----------------~~v~L~D 322 (531)
T KOG1191|consen 260 DEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-----------------VPVRLSD 322 (531)
T ss_pred hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC-----------------eEEEEEe
Confidence 33345566799999999999999999999999999999999999999999999877 7799999
Q ss_pred CCCCCC-CCCcccchh-hhhhhhhhccceEEEEeec
Q 014450 128 IAGLVK-GASQGEGLG-NKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 128 tpG~~~-~~~~~~~~~-~~~l~~i~~aD~il~Vvda 161 (424)
|+|+.+ .....+.++ ++....++.||++++|+|+
T Consensus 323 TAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 323 TAGIREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred ccccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 999988 333355565 6778889999999999999
No 45
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.62 E-value=7.3e-16 Score=120.09 Aligned_cols=65 Identities=29% Similarity=0.480 Sum_probs=54.2
Q ss_pred cEEEEecCCC----------CcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCC
Q 014450 340 LRTYFTSGEK----------ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 409 (424)
Q Consensus 340 li~~fT~g~~----------e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkd 409 (424)
+++||++..- -.+||++++|+||.|+|+.||+||.++|++|.++ | .| |++|++
T Consensus 1 ~~~v~pv~~~~~~~~~~~~~~~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k-~~--~~vg~~ 63 (76)
T cd01669 1 MIVVYPVEDENKLTDKEGNVLPDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R-TG--RRVGED 63 (76)
T ss_pred CccEEecccCCcccCCCCCCccceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e-CC--EEeCCC
Confidence 4788875411 2379999999999999999999999999999643 3 24 689999
Q ss_pred ceecCCCEEEEE
Q 014450 410 YIVQEGDVMLFR 421 (424)
Q Consensus 410 y~v~dgDii~~~ 421 (424)
|+|+|||||+|-
T Consensus 64 ~~L~dgDvV~Ii 75 (76)
T cd01669 64 YELKHRDVIKIV 75 (76)
T ss_pred cEecCCCEEEEe
Confidence 999999999984
No 46
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.61 E-value=9.3e-16 Score=158.32 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=102.9
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
+....+++|+++|.||||||||+|+|++...+.++++|+||++...+.+.+++ ..+.+|||||
T Consensus 198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-----------------~~v~l~DTaG 260 (442)
T TIGR00450 198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-----------------ILIKLLDTAG 260 (442)
T ss_pred HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-----------------EEEEEeeCCC
Confidence 45566799999999999999999999987788999999999999988888765 6689999999
Q ss_pred CCCCCCcccchh-hhhhhhhhccceEEEEeecCCCCceeeeccccccC--CchhhhhhhhhcccHHHHHHHHHHHHhhc-
Q 014450 131 LVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK--SDVDVINLELVFSDLDQIEKRMEKLKKGK- 206 (424)
Q Consensus 131 ~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~--~d~~~i~~el~~~~~~~i~~~~~~i~k~~- 206 (424)
+.+.....+..+ ......++.||++++|+|+++....... ....+ .+.+++ ++.|+.|........+.+..
T Consensus 261 ~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~~~~piI---lV~NK~Dl~~~~~~~~~~~~~ 335 (442)
T TIGR00450 261 IREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNKSKKPFI---LVLNKIDLKINSLEFFVSSKV 335 (442)
T ss_pred cccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhhCCCCEE---EEEECccCCCcchhhhhhhcC
Confidence 965433222222 3456788999999999999865432110 00000 122223 45677665332111111111
Q ss_pred -cCCCcchhhHHHHHHHHHHHHHHH
Q 014450 207 -AKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 207 -~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+...+||++ .++.++++.+.+.+
T Consensus 336 ~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 336 LNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred CceEEEEEec-CCHHHHHHHHHHHH
Confidence 111268887 46666666655554
No 47
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.60 E-value=1.4e-15 Score=140.96 Aligned_cols=158 Identities=26% Similarity=0.367 Sum_probs=100.8
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
+.....++|+|+|.||||||||+|+|++ ....+.+.+++|.++..+.+..++. ..+.||||||
T Consensus 36 ~~~~~~~~I~iiG~~g~GKStLl~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G 98 (204)
T cd01878 36 RKRSGIPTVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVG 98 (204)
T ss_pred hhhcCCCeEEEECCCCCCHHHHHHHHhc-chhccCCccceeccceeEEEEecCC----------------ceEEEeCCCc
Confidence 3345568999999999999999999994 4456677889999988887766541 3699999999
Q ss_pred CCCCCCcccchh---hhhhhhhhccceEEEEeecCCCCceeeec---cccc--cCCchhhhhhhhhcccHHHHHHHHHH-
Q 014450 131 LVKGASQGEGLG---NKFLSHIREVDSILQVVRCFEDNDIVHVN---GKVD--PKSDVDVINLELVFSDLDQIEKRMEK- 201 (424)
Q Consensus 131 ~~~~~~~~~~~~---~~~l~~i~~aD~il~Vvda~~~~~~~~~~---~~~d--p~~d~~~i~~el~~~~~~~i~~~~~~- 201 (424)
+.+..+. .+. ...+..+..+|++++|+|+++........ .... ...+.+++ ++.++.|..+.....
T Consensus 99 ~~~~~~~--~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~vi---iV~NK~Dl~~~~~~~~ 173 (204)
T cd01878 99 FIRDLPH--QLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMI---LVLNKIDLLDDEELEE 173 (204)
T ss_pred cccCCCH--HHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEE---EEEEccccCChHHHHH
Confidence 9654332 122 22344577899999999998764321110 0000 01122333 556777765432211
Q ss_pred -HHhh-ccCCCcchhhHHHHHHHHHHHHHHH
Q 014450 202 -LKKG-KAKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 202 -i~k~-~~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.... .+...+||+++.++.++++.+.+.|
T Consensus 174 ~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 174 RLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred HhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 1110 0111269999999999998886653
No 48
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.59 E-value=3.5e-15 Score=133.24 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=94.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+|++ ....++++|++|.++..+.+...+ ..+.||||||+.....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTR-AKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhc-CCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCCccc
Confidence 4799999999999999999994 445677789999998888876654 6799999999854322
Q ss_pred ccc-chhhhhhhhh-hccceEEEEeecCCCCce--eeec---ccc-ccCCchhhhhhhhhcccHHHHHHH-HHHHHhhcc
Q 014450 137 QGE-GLGNKFLSHI-REVDSILQVVRCFEDNDI--VHVN---GKV-DPKSDVDVINLELVFSDLDQIEKR-MEKLKKGKA 207 (424)
Q Consensus 137 ~~~-~~~~~~l~~i-~~aD~il~Vvda~~~~~~--~~~~---~~~-dp~~d~~~i~~el~~~~~~~i~~~-~~~i~k~~~ 207 (424)
... .+....+..+ ..+|++++|+|+++.... .... ... ....+.+++ ++.++.|..... .....+...
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvi---lv~NK~Dl~~~~~~~~~~~~~~ 139 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVI---VVLNKIDLLTFEDLSEIEEEEE 139 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeE---EEEEccccCchhhHHHHHHhhh
Confidence 111 1111122222 236999999999865431 0000 000 111133444 556666654321 111111111
Q ss_pred --C---CCcchhhHHHHHHHHHHHHHHH
Q 014450 208 --K---DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 208 --~---~~~Sak~~~~~~~ll~~i~~~L 230 (424)
. ..+||+++.+++++++.+.+.|
T Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 140 LEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hccCceEEEEecccCCHHHHHHHHHHHh
Confidence 1 1269999999999999888765
No 49
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.58 E-value=4.1e-15 Score=130.35 Aligned_cols=154 Identities=21% Similarity=0.212 Sum_probs=102.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
+++|+++|.||+|||||+|+|++...+.+++.|++|.+...+.+...+ ..+.++||||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-----------------EEEEEEECCCcCCCc
Confidence 368999999999999999999977777788899999988877766544 568999999986554
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHh-hccCCCcch
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSK 213 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k-~~~~~~~Sa 213 (424)
.. .....+.....+..+|++++|+|+++........- .......+++ ++++++|........... ..+.-.+||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~vi---~v~nK~D~~~~~~~~~~~~~~~~~~~Sa 139 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEI-LELPADKPII---VVLNKSDLLPDSELLSLLAGKPIIAISA 139 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHH-HHhhcCCCEE---EEEEchhcCCccccccccCCCceEEEEC
Confidence 32 11122455677889999999999986443211100 0001122333 557777765432210000 001112699
Q ss_pred hhHHHHHHHHHHHHHHH
Q 014450 214 LKEDAEKAALEKIQQAL 230 (424)
Q Consensus 214 k~~~~~~~ll~~i~~~L 230 (424)
+++.++.++++.+.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999887654
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.56 E-value=4.9e-15 Score=152.89 Aligned_cols=154 Identities=24% Similarity=0.223 Sum_probs=103.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+|||+||||||||+|+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-----------------eEEEEEECCCCCCcchh
Confidence 5899999999999999999988888999999999999999888766 56999999998543221
Q ss_pred -ccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHHHH--HHHHhhc--cCCC
Q 014450 138 -GEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEKRM--EKLKKGK--AKDS 210 (424)
Q Consensus 138 -~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~--~~i~k~~--~~~~ 210 (424)
.+.+...+..++++||++++|+|+....... .+...... ...+++ ++.|++|...... ....+.. ....
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~-~~~pii---lVvNK~D~~~~~~~~~~~~~lg~~~~~~ 139 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK-SGKPVI---LVANKIDGKKEDAVAAEFYSLGFGEPIP 139 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-hCCCEE---EEEECccCCcccccHHHHHhcCCCCeEE
Confidence 2344466778899999999999997642100 00000000 011122 3345555332211 1111110 1113
Q ss_pred cchhhHHHHHHHHHHHHHHHhC
Q 014450 211 QSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 211 ~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+||+.+.++.++++.+.+.++.
T Consensus 140 vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 140 ISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred EeCCcCCChHHHHHHHHHhcCc
Confidence 7999999999999999998865
No 51
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=3.2e-15 Score=156.10 Aligned_cols=156 Identities=22% Similarity=0.197 Sum_probs=103.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+|||.||||||||||+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+....
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-----------------RRFTVVDTGGWEPDA 100 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-----------------cEEEEEeCCCcCCcc
Confidence 379999999999999999999987778889999999998888877765 568999999985322
Q ss_pred C-cccchhhhhhhhhhccceEEEEeecCCCCce--eeeccccccCCchhhhhhhhhcccHHHHHH--HHHHHHhh-c-cC
Q 014450 136 S-QGEGLGNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKSDVDVINLELVFSDLDQIEK--RMEKLKKG-K-AK 208 (424)
Q Consensus 136 ~-~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~d~~~i~~el~~~~~~~i~~--~~~~i~k~-~-~~ 208 (424)
. ..+.+...+..++++||++|+|+|+++.... ..+..... ....+++ ++.|++|.... ........ . ..
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~-~~~~pii---lV~NK~Dl~~~~~~~~~~~~~g~~~~ 176 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLR-RSGKPVI---LAANKVDDERGEADAAALWSLGLGEP 176 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-HcCCCEE---EEEECccCCccchhhHHHHhcCCCCe
Confidence 1 1223334556678999999999999865321 00000000 0112223 34566554221 11111111 0 00
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 209 DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 209 ~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+||+++.++.++++.+.+.+++
T Consensus 177 ~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 177 HPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EEEEcCCCCCcHHHHHHHHhhccc
Confidence 137999999999999999988765
No 52
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.55 E-value=9e-15 Score=141.77 Aligned_cols=226 Identities=21% Similarity=0.232 Sum_probs=127.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCcc--ccCC-C--------------CccccceEEEeecCCCcchhhccccccccccC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQ--AANF-P--------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~--~s~~-p--------------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
+|+|+|.+|+|||||+|+|++...+. .... . +.|..+....+.+ ..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-----------------~~ 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-----------------KG 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-----------------CC
Confidence 58999999999999999998432221 0000 1 1222222222222 23
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HH
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RM 199 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~ 199 (424)
.++.+|||||..+ +.......++.+|++++|+|++..... . .+..+..+..... .+
T Consensus 64 ~~i~liDtPG~~~-------f~~~~~~~l~~aD~~i~Vvd~~~g~~~-------------~---~~~~~~~~~~~~~p~i 120 (268)
T cd04170 64 HKINLIDTPGYAD-------FVGETRAALRAADAALVVVSAQSGVEV-------------G---TEKLWEFADEAGIPRI 120 (268)
T ss_pred EEEEEEECcCHHH-------HHHHHHHHHHHCCEEEEEEeCCCCCCH-------------H---HHHHHHHHHHcCCCEE
Confidence 6799999999842 334667788999999999999653210 0 0000000000000 00
Q ss_pred HHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEeccc--cccccCCCCC
Q 014450 200 EKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVANV--AESDLADPGS 276 (424)
Q Consensus 200 ~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~nv--~~~~~~~~~~ 276 (424)
..++|+ + +.+....+.++.+.+.+ +.+..+..++..+.+.++ -+..+..+.+.|--+. ...++|
T Consensus 121 ivvNK~----D---~~~~~~~~~~~~l~~~~--~~~~~~~~ip~~~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p---- 187 (268)
T cd04170 121 IFINKM----D---RERADFDKTLAALQEAF--GRPVVPLQLPIGEGDDFKGVVDLLTEKAYIYSPGAPSEEIEIP---- 187 (268)
T ss_pred EEEECC----c---cCCCCHHHHHHHHHHHh--CCCeEEEEecccCCCceeEEEEcccCEEEEccCCCcceeccCC----
Confidence 000111 1 11223456667777776 433333333333222233 1233455555552111 111222
Q ss_pred CcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecC
Q 014450 277 NPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (424)
Q Consensus 277 ~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g 347 (424)
.+...++.++ ...+-+.+++.|++.++.||++..++...+.+.+++++..-.++|||-..
T Consensus 188 ~~~~~~~~~~-----------~~~l~e~~a~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~~~~~pv~~gS 247 (268)
T cd04170 188 EELKEEVAEA-----------REELLEAVAETDDELMEKYLEGGELTEEELHAGLRRALRAGLLVPVLCGS 247 (268)
T ss_pred HHHHHHHHHH-----------HHHHHHHHhhCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEEee
Confidence 2334444443 34466678999999999999999999999999999999999999999754
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=1.4e-14 Score=151.31 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=104.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.||||||||+|+|++...+.+++.|+||+++....+.+.+ .++.||||||+.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-----------------~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-----------------KTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-----------------EEEEEEECCCcccc
Confidence 3589999999999999999999977777899999999999888887765 56889999998654
Q ss_pred CCcc--cchhh--hhhhhhhccceEEEEeecCCCCceeee--ccccccCCchhhhhhhhhcccHHHHHH-HH----HHHH
Q 014450 135 ASQG--EGLGN--KFLSHIREVDSILQVVRCFEDNDIVHV--NGKVDPKSDVDVINLELVFSDLDQIEK-RM----EKLK 203 (424)
Q Consensus 135 ~~~~--~~~~~--~~l~~i~~aD~il~Vvda~~~~~~~~~--~~~~dp~~d~~~i~~el~~~~~~~i~~-~~----~~i~ 203 (424)
.... ..... .....++.||++++|+|+++....... ..... ....+++ ++.|++|..+. .. ..+.
T Consensus 273 ~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~-~~~~piI---iV~NK~Dl~~~~~~~~~~~~i~ 348 (472)
T PRK03003 273 VKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVI-EAGRALV---LAFNKWDLVDEDRRYYLEREID 348 (472)
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEE---EEEECcccCChhHHHHHHHHHH
Confidence 3221 11111 123457899999999999875431110 00000 0112222 44666665421 11 1121
Q ss_pred hhc---cCC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 204 KGK---AKD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~---~~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
... ... .+||+++.+++++++.+.+.++.
T Consensus 349 ~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 349 RELAQVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred HhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111 111 26999999999999999998865
No 54
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.53 E-value=3.8e-14 Score=154.94 Aligned_cols=154 Identities=21% Similarity=0.291 Sum_probs=102.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||||||||||+|+| ....++++|++|.+...+.+..++ .++.++||||+.+..
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg-~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG-ARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC-CCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccc
Confidence 46899999999999999999994 456899999999999999887765 679999999997543
Q ss_pred Cc------ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHh
Q 014450 136 SQ------GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKK 204 (424)
Q Consensus 136 ~~------~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k 204 (424)
.. ++.....++. ...+|++++|+|+++......+...... ..++.+ +.+|++|..+++ .+.+.+
T Consensus 65 ~~~~~~s~~E~i~~~~l~-~~~aD~vI~VvDat~ler~l~l~~ql~e-~giPvI---vVlNK~Dl~~~~~i~id~~~L~~ 139 (772)
T PRK09554 65 TISSQTSLDEQIACHYIL-SGDADLLINVVDASNLERNLYLTLQLLE-LGIPCI---VALNMLDIAEKQNIRIDIDALSA 139 (772)
T ss_pred cccccccHHHHHHHHHHh-ccCCCEEEEEecCCcchhhHHHHHHHHH-cCCCEE---EEEEchhhhhccCcHHHHHHHHH
Confidence 21 1222222221 2579999999999764431111000000 112223 446777765431 222333
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.... -++||+++.+++++.+.+.+..+.
T Consensus 140 ~LG~pVvpiSA~~g~GIdeL~~~I~~~~~~ 169 (772)
T PRK09554 140 RLGCPVIPLVSTRGRGIEALKLAIDRHQAN 169 (772)
T ss_pred HhCCCEEEEEeecCCCHHHHHHHHHHhhhc
Confidence 2221 136999999999999999887753
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.53 E-value=1.1e-14 Score=159.15 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=105.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+|+|+||||||||||+|+|...+.+++.|++|++...+.....+ ..+.+|||||+...
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-----------------~~~~liDT~G~~~~ 336 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-----------------TDFKLVDTGGWEAD 336 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-----------------EEEEEEeCCCcCCC
Confidence 3478999999999999999999988888999999999998887776655 56999999998643
Q ss_pred CC-cccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHHHHH--HHHhhc--c
Q 014450 135 AS-QGEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEKRME--KLKKGK--A 207 (424)
Q Consensus 135 ~~-~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~--~i~k~~--~ 207 (424)
.. ....+.+++...++.||++|+|+|+++..... .+..... ....+++ ++.|+.|..+.... ...... .
T Consensus 337 ~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr-~~~~pvI---lV~NK~D~~~~~~~~~~~~~lg~~~ 412 (712)
T PRK09518 337 VEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLR-RAGKPVV---LAVNKIDDQASEYDAAEFWKLGLGE 412 (712)
T ss_pred CccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH-hcCCCEE---EEEECcccccchhhHHHHHHcCCCC
Confidence 21 12334456677789999999999997532100 0000000 0112222 44566664332111 111110 0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
...+||+++.|+.++++.+.+.++.
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 1137999999999999999988865
No 56
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.52 E-value=9.7e-14 Score=128.21 Aligned_cols=90 Identities=20% Similarity=0.111 Sum_probs=68.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccC-CCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~-~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+|+|+|.||||||||+|+|+|...+.++. .+++|.+++.+...+.+ .++.++||||+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-----------------RRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-----------------eEEEEEECcCCCCcc
Confidence 479999999999999999999877765553 46788888887776655 679999999998664
Q ss_pred Ccccch----hhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGL----GNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~----~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+.+ ...+......+|++|+|+|+..
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 322222 2233334577899999999865
No 57
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.51 E-value=1.5e-14 Score=149.54 Aligned_cols=153 Identities=24% Similarity=0.213 Sum_probs=101.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|+|.||||||||+|+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-----------------cEEEEEECCCCCCcch
Confidence 58999999999999999999988878899999999999998887765 6699999999975222
Q ss_pred -cccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHH--HHHHHHhhc--cCC
Q 014450 137 -QGEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEK--RMEKLKKGK--AKD 209 (424)
Q Consensus 137 -~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~--~~~~i~k~~--~~~ 209 (424)
....+...+..+++.||++++|+|+.+..... .+...... ...+++ ++.|+.|..+. ......+.. ...
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~-~~~pii---lv~NK~D~~~~~~~~~~~~~lg~~~~~ 140 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK-SNKPVI---LVVNKVDGPDEEADAYEFYSLGLGEPY 140 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCcEE---EEEECccCccchhhHHHHHhcCCCCCE
Confidence 12223455677889999999999997642210 00000000 011222 34555553221 111111110 011
Q ss_pred CcchhhHHHHHHHHHHHHHHH
Q 014450 210 SQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 210 ~~Sak~~~~~~~ll~~i~~~L 230 (424)
.+||+++.++.++++.+.+.+
T Consensus 141 ~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 141 PISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEeeCCCCHHHHHHHHHhhC
Confidence 379999999999999887733
No 58
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.51 E-value=4e-14 Score=124.61 Aligned_cols=92 Identities=38% Similarity=0.432 Sum_probs=72.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||+|||||+|+|+|...+.+++.+.+|.....+....++ ..+.++||||+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcch
Confidence 468999999999999999999988777788888888877776655543 568999999986554
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCC
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.. .+.+.......+..+|++++|+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASEP 95 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCCc
Confidence 32 222334456678999999999999765
No 59
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.50 E-value=7.9e-13 Score=125.98 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=44.8
Q ss_pred ecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 297 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 297 ~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
+...+-+.+++.|++.+++||++..++...+...++++.....++|||-.
T Consensus 166 ~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~g 215 (237)
T cd04168 166 IDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHG 215 (237)
T ss_pred ccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 35677788899999999999999999999999999999999999999963
No 60
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.50 E-value=2.4e-14 Score=125.67 Aligned_cols=149 Identities=26% Similarity=0.243 Sum_probs=95.5
Q ss_pred EEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC-cc
Q 014450 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS-QG 138 (424)
Q Consensus 60 ~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~-~~ 138 (424)
+++|.+|||||||+|+|++.....+++.|++|++.....+...+ ..+.++||||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 58999999999999999977666778889999888777766654 6699999999965433 12
Q ss_pred cchhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHHHHH--HHHhhc--cCCCcc
Q 014450 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEKRME--KLKKGK--AKDSQS 212 (424)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~--~i~k~~--~~~~~S 212 (424)
..+.+.+...++.+|++++|+|+.+...... +...... ...+++ ++++++|..+.... .+.... +...+|
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~-~~~pii---iv~nK~D~~~~~~~~~~~~~~~~~~~~~~S 139 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRK-SKKPVI---LVVNKVDNIKEEDEAAEFYSLGFGEPIPIS 139 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHh-cCCCEE---EEEECcccCChHHHHHHHHhcCCCCeEEEe
Confidence 3344556677899999999999865422100 0000000 011222 34566654443211 111110 111268
Q ss_pred hhhHHHHHHHHHHHHHH
Q 014450 213 KLKEDAEKAALEKIQQA 229 (424)
Q Consensus 213 ak~~~~~~~ll~~i~~~ 229 (424)
++++.+++++++.+.+.
T Consensus 140 a~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 140 AEHGRGIGDLLDAILEL 156 (157)
T ss_pred cccCCCHHHHHHHHHhh
Confidence 99999999999888764
No 61
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.49 E-value=3.4e-14 Score=125.08 Aligned_cols=147 Identities=25% Similarity=0.341 Sum_probs=93.0
Q ss_pred EEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc--c
Q 014450 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--G 138 (424)
Q Consensus 61 ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~--~ 138 (424)
|+|.+|||||||+|++++. ...++++|++|++...+.+.+++ ..+.+|||||+...... .
T Consensus 1 l~G~~~~GKssl~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC-cccccCCCCcccccceEEEeeCC-----------------eEEEEEECCCccccCCCChh
Confidence 5899999999999999954 47788899999999888887765 56999999998654332 2
Q ss_pred cchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-----HHHHHHhhcc--CCCc
Q 014450 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-----RMEKLKKGKA--KDSQ 211 (424)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~k~~~--~~~~ 211 (424)
..+...++.. ..+|++++|+|+.+............. ...+.+ ++.+++|.... ....+.+... ...+
T Consensus 63 ~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~~~~~-~~~~~i---iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i 137 (158)
T cd01879 63 EKVARDFLLG-EKPDLIVNVVDATNLERNLYLTLQLLE-LGLPVV---VALNMIDEAEKRGIKIDLDKLSELLGVPVVPT 137 (158)
T ss_pred HHHHHHHhcC-CCCcEEEEEeeCCcchhHHHHHHHHHH-cCCCEE---EEEehhhhcccccchhhHHHHHHhhCCCeEEE
Confidence 2233344443 689999999999764431111000000 012222 34566654332 1111211111 1236
Q ss_pred chhhHHHHHHHHHHHHHHH
Q 014450 212 SKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 212 Sak~~~~~~~ll~~i~~~L 230 (424)
||.++.++.++++.+.+.+
T Consensus 138 Sa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 138 SARKGEGIDELKDAIAELA 156 (158)
T ss_pred EccCCCCHHHHHHHHHHHh
Confidence 8888889988888887665
No 62
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.49 E-value=3.5e-14 Score=125.69 Aligned_cols=147 Identities=19% Similarity=0.141 Sum_probs=93.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|+|++ .....+..|++|.+.....+.+++.. .++.+|||||..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~---- 60 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMY-DTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQE---- 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-CCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcH----
Confidence 3799999999999999999994 44445677888888777777665522 568999999952
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
.+.......++.+|++++|+|+++...+..+......+ .+.+++ ++.++.|..++ ......+.
T Consensus 61 ---~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii---lv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd01861 61 ---RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIV---LVGNKTDLSDKRQVSTEEGEKKAKE 134 (161)
T ss_pred ---HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEE---EEEEChhccccCccCHHHHHHHHHH
Confidence 22234455678999999999997754432211111100 123333 44566665322 11111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
.. ....||+++.+++++++.+.+.
T Consensus 135 ~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 135 LNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred hCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 11 1126899999999999888764
No 63
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.49 E-value=2.7e-13 Score=139.95 Aligned_cols=157 Identities=21% Similarity=0.274 Sum_probs=104.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.||+|||||+|+|++.....+++.|+||+++....+...+ ..+.+|||||+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-----------------cEEEEEECCCcccc
Confidence 3579999999999999999999988888899999999999888877655 46899999999765
Q ss_pred CCcccch----hhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHH-H-HHH----HHH
Q 014450 135 ASQGEGL----GNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQI-E-KRM----EKL 202 (424)
Q Consensus 135 ~~~~~~~----~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i-~-~~~----~~i 202 (424)
....+.+ ..+.+..++.||++++|+|+++...... +..... ....+.+ +++|++|.+ + ... ..+
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~-~~~~~ii---iv~NK~Dl~~~~~~~~~~~~~~ 309 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLIL-EAGKALV---IVVNKWDLVKDEKTREEFKKEL 309 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-HcCCcEE---EEEECcccCCCHHHHHHHHHHH
Confidence 5432222 1344677899999999999986532100 000000 0011222 335555544 1 111 112
Q ss_pred Hhhcc---CC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 203 KKGKA---KD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 203 ~k~~~---~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..... .. .+||+++.++.++++.+.+.+..
T Consensus 310 ~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 310 RRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 22111 11 26999999999999999887753
No 64
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=2.9e-13 Score=140.05 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=103.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.||+|||||+|+|++...+.+++.|++|++.....+...+ ..+.++||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-----------------QKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-----------------eeEEEEECCCCCCC
Confidence 4689999999999999999999988888999999999998877766554 56899999999766
Q ss_pred CCcccchh----hhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHH-----HHHHHH
Q 014450 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEK-----RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~----~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~ 203 (424)
.+....+. ...+..++.||++++|+|+++...... +..... ....+.+ +++|++|.+.. ....+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~-~~~~~~i---vv~NK~Dl~~~~~~~~~~~~~~ 310 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLAL-EAGRALV---IVVNKWDLVDEKTMEEFKKELR 310 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCcEE---EEEECccCCCHHHHHHHHHHHH
Confidence 54432221 345677899999999999986532100 000000 0001111 23445443311 111122
Q ss_pred hhcc---CCC---cchhhHHHHHHHHHHHHHHHhC
Q 014450 204 KGKA---KDS---QSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~~---~~~---~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.... ..+ +||+++.++.++++.+.+....
T Consensus 311 ~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 311 RRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred HhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 112 6999999999999998887754
No 65
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=3e-13 Score=147.88 Aligned_cols=156 Identities=21% Similarity=0.243 Sum_probs=104.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|++.....++++|+||+++....+.+.+ .++.||||||+.+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTaG~~~~~ 512 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-----------------EDWLFIDTAGIKRRQ 512 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-----------------CEEEEEECCCcccCc
Confidence 479999999999999999999987777889999999999988887765 568899999987543
Q ss_pred Ccccc---hh-hhhhhhhhccceEEEEeecCCCCceeee--ccccccCCchhhhhhhhhcccHHHHHH-HHHH----HHh
Q 014450 136 SQGEG---LG-NKFLSHIREVDSILQVVRCFEDNDIVHV--NGKVDPKSDVDVINLELVFSDLDQIEK-RMEK----LKK 204 (424)
Q Consensus 136 ~~~~~---~~-~~~l~~i~~aD~il~Vvda~~~~~~~~~--~~~~dp~~d~~~i~~el~~~~~~~i~~-~~~~----i~k 204 (424)
....+ +. .....+++.||++++|+|+++....... ...... ...+++ ++.|++|.++. .... +..
T Consensus 513 ~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~-~~~piI---iV~NK~DL~~~~~~~~~~~~~~~ 588 (712)
T PRK09518 513 HKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVD-AGRALV---LVFNKWDLMDEFRRQRLERLWKT 588 (712)
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEE---EEEEchhcCChhHHHHHHHHHHH
Confidence 32111 11 1234567899999999999875421100 000000 112222 44666665432 1111 111
Q ss_pred hc---cC---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 205 GK---AK---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 205 ~~---~~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.. .. ..+||+++.++.++++.+.+.+++
T Consensus 589 ~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 589 EFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred hccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11 11 126999999999999999998875
No 66
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.46 E-value=1.1e-12 Score=116.48 Aligned_cols=93 Identities=26% Similarity=0.352 Sum_probs=72.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||+|||||+|+|++......++.|++|++.....+...+ ..+.+|||||+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCcccc
Confidence 478999999999999999999977667778889999888777666554 458899999997554
Q ss_pred Ccccch----hhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGL----GNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~----~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
+....+ ....+..++.+|++++|+|++++.
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~ 98 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATEGI 98 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCc
Confidence 322222 123456678999999999997754
No 67
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.46 E-value=1.7e-13 Score=121.21 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=61.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCcc--ccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~--~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+.|+++|.||||||||+|+|++..... ....+++|.+.....+..++ ..++.+|||||..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~-- 62 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHE-- 62 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChH--
Confidence 479999999999999999999643222 22345677776665555541 1569999999972
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+.......++.||++++|+|+++
T Consensus 63 -----~~~~~~~~~~~~ad~ii~V~d~~~ 86 (164)
T cd04171 63 -----KFIKNMLAGAGGIDLVLLVVAADE 86 (164)
T ss_pred -----HHHHHHHhhhhcCCEEEEEEECCC
Confidence 333455667889999999999975
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.45 E-value=1.4e-13 Score=127.65 Aligned_cols=155 Identities=12% Similarity=0.126 Sum_probs=91.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+|+|.||||||||+|+++++.. .....|.++.+.....+.+++.. ..+.+|||||......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEECCEE---------------EEEEEEeCCCcccCCc
Confidence 4899999999999999999995443 22334544433333333444321 5688999999864322
Q ss_pred c-ccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc--------CCchhhhhhhhhcccHHHHHHH------HHH
Q 014450 137 Q-GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP--------KSDVDVINLELVFSDLDQIEKR------MEK 201 (424)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp--------~~d~~~i~~el~~~~~~~i~~~------~~~ 201 (424)
. +..+.......++.||++++|+|+++..++.++....+. ..+++++ ++.|+.|..+.+ ...
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~pii---ivgNK~Dl~~~~~~~~~~~~~ 141 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIV---VVGNKRDQQRHRFAPRHVLSV 141 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEE---EEEECccccccccccHHHHHH
Confidence 1 111222234557899999999999877654332211110 1223444 556666653321 111
Q ss_pred HHh-hccC--CCcchhhHHHHHHHHHHHHHHH
Q 014450 202 LKK-GKAK--DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 202 i~k-~~~~--~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+.+ .... ..+||++|.|+.++++.+.+..
T Consensus 142 ~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 142 LVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred HHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 111 1111 2369999999999999887655
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.45 E-value=2.5e-12 Score=114.48 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=59.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+|++. .......|.++.+.....+..++. ...+.+|||||...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~--- 64 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN-EFNLDSKSTIGVEFATRSIQIDGK---------------TIKAQIWDTAGQER--- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHH---
Confidence 68999999999999999999944 444444566665555555555442 15689999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 65 ----~~~~~~~~~~~~~~~i~v~d~~ 86 (165)
T cd01868 65 ----YRAITSAYYRGAVGALLVYDIT 86 (165)
T ss_pred ----HHHHHHHHHCCCCEEEEEEECc
Confidence 2223345578899999999984
No 70
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=2.2e-13 Score=132.01 Aligned_cols=232 Identities=14% Similarity=0.086 Sum_probs=121.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCcccc--C------CCCccccceEEEeecCCCcchhhccccccccccCceEEEEeC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDt 128 (424)
.+|+|+|++|+|||||+|+|+....+... . ...++.|... ..-.|--.+.....+..+...++.+|||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~----~e~~rg~si~~~~~~~~~~~~~i~liDT 78 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWME----IEKQRGISVTSSVMQFEYRDCVINLLDT 78 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcH----HHHhCCCCeEEEEEEEeeCCEEEEEEEC
Confidence 47999999999999999999843222110 0 0111111000 0000000011111223344578999999
Q ss_pred CCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HHHHHHhhcc
Q 014450 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RMEKLKKGKA 207 (424)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~~ 207 (424)
||..+ +.......++.+|++++|+|+++... ...+..+...+.... .+..++|+
T Consensus 79 PG~~d-------f~~~~~~~l~~aD~~IlVvda~~g~~----------------~~~~~i~~~~~~~~~P~iivvNK~-- 133 (267)
T cd04169 79 PGHED-------FSEDTYRTLTAVDSAVMVIDAAKGVE----------------PQTRKLFEVCRLRGIPIITFINKL-- 133 (267)
T ss_pred CCchH-------HHHHHHHHHHHCCEEEEEEECCCCcc----------------HHHHHHHHHHHhcCCCEEEEEECC--
Confidence 99843 23356677899999999999864310 000000000000000 00000111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEeccccccccCCCCCCcchHHHHHH
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL 286 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~ 286 (424)
+ ..+.....+++.+.+.+ +.+..+.+|+..+.+.++ -+.++..+.+.|.-.- + ...
T Consensus 134 --D---~~~a~~~~~~~~l~~~l--~~~~~~~~~Pi~~~~~~~g~vd~~~~~a~~~~~~~-------~--~~~------- 190 (267)
T cd04169 134 --D---REGRDPLELLDEIEEEL--GIDCTPLTWPIGMGKDFKGVYDRRTGEVELYDRGA-------G--GAT------- 190 (267)
T ss_pred --c---cCCCCHHHHHHHHHHHH--CCCceeEEecccCCCceEEEEEhhhCEEEEecCCC-------C--Ccc-------
Confidence 1 11223345567777777 444444445443333333 2344555555551100 0 000
Q ss_pred HhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 287 ASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 287 ~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
....++.+.+.+.+++.+++.++.|+++..+....+.++++.++....++|||-
T Consensus 191 -----~~~~~~p~~~~e~~~e~~~~l~e~~~e~~~~~~~~~~~~~~~~~~~~~~~Pv~~ 244 (267)
T cd04169 191 -----IAPEETKGLDDPKLDELGGDLAEQLREELELLEGAGPEFDQEAFLAGELTPVFF 244 (267)
T ss_pred -----ceeccCCcccHHHHHhcCHHHHHHHhCCCccchhhhHHHhHHHHHcCCEEEEEe
Confidence 001111233346688888899999999888887788899999999999999995
No 71
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.42 E-value=2e-13 Score=121.77 Aligned_cols=148 Identities=15% Similarity=0.189 Sum_probs=89.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+++++ .......|..+.+.....+..++. ..++.+|||||...
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~--- 63 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADD-TYTESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQER--- 63 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCcHh---
Confidence 68999999999999999999943 333333444444444444544432 15689999999632
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
+.......++.+|++++|+|+++..++..+......+ .+.+.+ ++.++.|..+.. .....+.
T Consensus 64 ----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~i---iv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (166)
T cd01869 64 ----FRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKL---LVGNKCDLTDKRVVDYSEAQEFADE 136 (166)
T ss_pred ----HHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE---EEEEChhcccccCCCHHHHHHHHHH
Confidence 2223345678999999999998765432221111100 122223 445666543221 1111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.. ...+||+++.+++++++.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 137 LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 11 12269999999999999887765
No 72
>PRK04213 GTP-binding protein; Provisional
Probab=99.42 E-value=4e-13 Score=124.07 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=89.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++. ...++..|++|+++.... + ..+.+|||||+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~-~~~~~~~~~~t~~~~~~~--~-------------------~~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK-KVRVGKRPGVTRKPNHYD--W-------------------GDFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCceeeCceEEe--e-------------------cceEEEeCCccccc
Confidence 3579999999999999999999954 467888899988755322 2 24899999997321
Q ss_pred C--Cc--ccchhhh---hh-hhhhccceEEEEeecCCCCcee-eec------------cccccCCchhhhhhhhhcccHH
Q 014450 135 A--SQ--GEGLGNK---FL-SHIREVDSILQVVRCFEDNDIV-HVN------------GKVDPKSDVDVINLELVFSDLD 193 (424)
Q Consensus 135 ~--~~--~~~~~~~---~l-~~i~~aD~il~Vvda~~~~~~~-~~~------------~~~dp~~d~~~i~~el~~~~~~ 193 (424)
. +. .+.+... +. ..+..+|++++|+|++....+. ... .... ..+++.+ ++.|+.|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~p~i---iv~NK~D 141 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-ELGIPPI---VAVNKMD 141 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-HcCCCeE---EEEECcc
Confidence 1 11 1112111 22 2455678999999986532210 000 0000 0122222 4466666
Q ss_pred HHHH---HHHHHHhhcc-----------CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 194 QIEK---RMEKLKKGKA-----------KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 194 ~i~~---~~~~i~k~~~-----------~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.... ....+.+... ...+||+++ +++++++.+.+.+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 142 KIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 4322 1222222111 113699999 999999999888754
No 73
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.41 E-value=4.3e-13 Score=123.21 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=93.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccc-cceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI-EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~-~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
++|+++|.+|||||||+++++ ........++.|+. +.....+.+++.. .++.+|||||..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~--- 61 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFK-DGAFLNGNFIATVGIDFRNKVVTVDGVK---------------VKLQIWDTAGQE--- 61 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHh-cCCCCccCcCCcccceeEEEEEEECCEE---------------EEEEEEeCCCcH---
Confidence 489999999999999999999 44444434433332 2222234444322 578999999952
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
.+.......++.+|++++|+|+++..++..+..+.+. ..+++++ ++.++.|.... ....+.+
T Consensus 62 ----~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii---iv~NK~Dl~~~~~~~~~~~~~l~~ 134 (191)
T cd04112 62 ----RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIM---LLGNKADMSGERVVKREDGERLAK 134 (191)
T ss_pred ----HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEEcccchhccccCHHHHHHHHH
Confidence 2222334567889999999999876543211111110 0123333 45666665421 1122222
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHhCCCCcc
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALMDGKPAR 237 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~ 237 (424)
... ...+||+++.+++++++.+.+.+.+....+
T Consensus 135 ~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~~~~ 169 (191)
T cd04112 135 EYGVPFMETSAKTGLNVELAFTAVAKELKHRKYEQ 169 (191)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence 211 123699999999999999999887664433
No 74
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.41 E-value=2.2e-13 Score=127.61 Aligned_cols=150 Identities=14% Similarity=0.155 Sum_probs=92.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|||||||+|+|++ ........|+.+.+.....+.+++.. ...+.+|||||...+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~-~~~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~-- 63 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK-EGFGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIG-- 63 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc-CCCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHH--
Confidence 4899999999999999999994 43434444555556555555554311 256899999996322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc--------CCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP--------KSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp--------~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.......+++||++++|+|+++...+..+..+.+. ....+++ ++.++.|..+. ....+
T Consensus 64 -----~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~pii---lVgNK~DL~~~~~v~~~~~~~~ 135 (215)
T cd04109 64 -----GKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVV---LVGNKTDLEHNRTVKDDKHARF 135 (215)
T ss_pred -----HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEE---EEEECcccccccccCHHHHHHH
Confidence 12333457899999999999876543322111110 0112223 45666665422 11122
Q ss_pred Hhhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 203 KKGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+... ...+||+++.++.++++.+.+.+.
T Consensus 136 ~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 136 AQANGMESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred HHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22211 123699999999999999988775
No 75
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.40 E-value=2.4e-13 Score=122.02 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=88.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
-++|++||.||||||||+|++++.. ......+..+.+.....+...+. ...+.+|||||.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~---- 63 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDGK---------------QIKLQIWDTAGQ---- 63 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCc----
Confidence 3799999999999999999999443 33333344444444444444432 256899999995
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
+.+.......++.+|++++|+|++++.++..+..+... ..+++++ ++.++.|..++. ...+.+
T Consensus 64 ---~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvi---vv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T cd01866 64 ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIM---LIGNKCDLESRREVSYEEGEAFAK 137 (168)
T ss_pred ---HHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEECcccccccCCCHHHHHHHHH
Confidence 23333445667899999999999865543222111100 0122222 344555443210 111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. ..-.+||+++.+++++++.+.+.+.
T Consensus 138 ~~~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 138 EHGLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11 1112689999999998888877653
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.40 E-value=3.7e-13 Score=119.97 Aligned_cols=149 Identities=12% Similarity=0.125 Sum_probs=83.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+++++++. ......+....+.....+...+. ...+.+|||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~--- 61 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGK---------------TILVDFWDTAGQER--- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCchh---
Confidence 489999999999999999999443 22111111111111111222221 25688999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc----CCchhhhhhhhhcccHHHHHHHHH---HHHhhcc--
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP----KSDVDVINLELVFSDLDQIEKRME---KLKKGKA-- 207 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp----~~d~~~i~~el~~~~~~~i~~~~~---~i~k~~~-- 207 (424)
+.......++.+|++++|+|+++......+..+.+. ..+++++ ++.++.|....... ...+...
T Consensus 62 ----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~i---vv~nK~Dl~~~~~~~~~~~~~~~~~~ 134 (161)
T cd04124 62 ----FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCI---VVANKIDLDPSVTQKKFNFAEKHNLP 134 (161)
T ss_pred ----hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE---EEEECccCchhHHHHHHHHHHHcCCe
Confidence 222444567899999999999876543221111100 1123333 45666664222111 1111111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+||+++.+++++++.+.+.+.
T Consensus 135 ~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 135 LYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 113699999999999999887654
No 77
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.40 E-value=2.3e-13 Score=121.67 Aligned_cols=149 Identities=17% Similarity=0.148 Sum_probs=85.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|++.. ......|.++.+.....+..++. ...+.+|||||..+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~g~~~--- 62 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDS-FTSAFVSTVGIDFKVKTVFRNDK---------------RVKLQIWDTAGQER--- 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHH---
Confidence 689999999999999999999443 32222232222221112222221 25689999999632
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
+.......++.+|++++|+|+++...+..+..+... ..+.+++ ++.++.|..+.+ ...+.+.
T Consensus 63 ----~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---vv~nK~Dl~~~~~~~~~~~~~~~~~ 135 (165)
T cd01865 63 ----YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVI---LVGNKCDMEDERVVSSERGRQLADQ 135 (165)
T ss_pred ----HHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEE---EEEECcccCcccccCHHHHHHHHHH
Confidence 223445667899999999999876543222111100 0122222 345555543221 1111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. ...+||+++.|+.++++.+.+.+.
T Consensus 136 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 136 LGFEFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11 123699999999999999987764
No 78
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39 E-value=6.3e-13 Score=117.92 Aligned_cols=148 Identities=15% Similarity=0.200 Sum_probs=86.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|+|+++. ......|..+.+.....+...+. ...+.+|||||...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~--- 61 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR-FVSKYLPTIGIDYGVKKVSVRNK---------------EVRVNFFDLSGHPE--- 61 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCe---------------EEEEEEEECCccHH---
Confidence 489999999999999999999544 33333343333333333444331 26789999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccc-------ccc---CCchhhhhhhhhcccHHHHHH------HHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK-------VDP---KSDVDVINLELVFSDLDQIEK------RME 200 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~-------~dp---~~d~~~i~~el~~~~~~~i~~------~~~ 200 (424)
........++.+|++++|+|.++...+..+..+ ..+ ....+++ ++.++.|..++ ...
T Consensus 62 ----~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~ 134 (168)
T cd04119 62 ----YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVV---VCANKIDLTKHRAVSEDEGR 134 (168)
T ss_pred ----HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEE---EEEEchhcccccccCHHHHH
Confidence 122333446889999999999876543221111 111 1223333 45666665421 111
Q ss_pred HHHhhcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 201 KLKKGKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 201 ~i~k~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.+.+... ...+||+++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 135 LWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111111 12369999999999999887654
No 79
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.39 E-value=3.4e-13 Score=121.31 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=89.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|+|++.. . .. +.+|+......+...+ .++.+|||||.....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~--~~-~~~T~~~~~~~~~~~~-----------------~~i~l~Dt~G~~~~~-- 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F--MQ-PIPTIGFNVETVEYKN-----------------LKFTIWDVGGKHKLR-- 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C--CC-cCCcCceeEEEEEECC-----------------EEEEEEECCCChhcc--
Confidence 58999999999999999999542 2 12 3445544444444433 679999999974322
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH----HHHHHHhhcc
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK----RMEKLKKGKA 207 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~----~~~~i~k~~~ 207 (424)
..+...++.+|++++|+|+++...+..+.... ....+.+++ ++.|+.|...+ ....+.+...
T Consensus 58 -----~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~~~~~~ 129 (169)
T cd04158 58 -----PLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLL---IFANKQDVAGALSVEEMTELLSLHK 129 (169)
T ss_pred -----hHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEE---EEEeCcCcccCCCHHHHHHHhCCcc
Confidence 24455678999999999998765331111100 011122233 34555553211 1111111100
Q ss_pred --------CCCcchhhHHHHHHHHHHHHHHHhCCCCc
Q 014450 208 --------KDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (424)
Q Consensus 208 --------~~~~Sak~~~~~~~ll~~i~~~L~~~~~~ 236 (424)
....||+++.|+.++++.+.+.+.++.++
T Consensus 130 ~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~~~ 166 (169)
T cd04158 130 LCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAGVL 166 (169)
T ss_pred ccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcccc
Confidence 11259999999999999999888776543
No 80
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.39 E-value=2e-13 Score=121.75 Aligned_cols=84 Identities=23% Similarity=0.290 Sum_probs=60.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCc---cccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~---~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+|+++|.+|+|||||+|+|++.... .....+.+|+..+.+.+.+++ ..+.+|||||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~- 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQES- 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCChh-
Confidence 5899999999999999999853221 112234556666666666654 6799999999742
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
+...+...++.+|++++|+|+++..
T Consensus 63 ------~~~~~~~~~~~~~~~v~vvd~~~~~ 87 (167)
T cd04160 63 ------LRSLWDKYYAECHAIIYVIDSTDRE 87 (167)
T ss_pred ------hHHHHHHHhCCCCEEEEEEECchHH
Confidence 2234456688999999999997653
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.39 E-value=1.7e-11 Score=108.05 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=54.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+++++.. ...++.|+.+.....+.+++. ...+.+|||||..+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~--- 61 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEE--- 61 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCE---------------EEEEEEEECCCCcc---
Confidence 5899999999999999999995442 223333443333333344331 14578999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|.+
T Consensus 62 ----~~~l~~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 62 ----YSAMRDQYMRTGEGFLCVFAIN 83 (162)
T ss_pred ----hHHHHHHHHhcCCEEEEEEECC
Confidence 2223345677899999999974
No 82
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3e-12 Score=116.62 Aligned_cols=91 Identities=21% Similarity=0.237 Sum_probs=66.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..+.|+++|++|||||||+|+|+|++ .+.+|..|+.|+..|.-.+. ..+.|||.||+.-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--------------------CcEEEEeCCCccc
Confidence 45799999999999999999999745 49999999999988766542 3388999999942
Q ss_pred CC-Cc--ccchh---hhhhhhhhccceEEEEeecCCCC
Q 014450 134 GA-SQ--GEGLG---NKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 134 ~~-~~--~~~~~---~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
-. ++ .+.+. .+++..-.+-.++++++|+....
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~ 120 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPP 120 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCC
Confidence 11 11 22222 34444434567889999997654
No 83
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.38 E-value=6.2e-13 Score=144.97 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=123.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc-----ccC------------CCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~-----~s~------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+|+|++|+|||||+|+|+...... +.+ ..++|++.....+.+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--------------- 74 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--------------- 74 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC---------------
Confidence 4599999999999999999997322211 111 23555555555555544
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHH
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIE 196 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~ 196 (424)
.++.||||||+.++. ......++.+|++++|+|+.+...... +...... ..++.+ +..|++|.
T Consensus 75 --~~i~liDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~-~~~p~i---vviNK~D~-- 139 (689)
T TIGR00484 75 --HRINIIDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR-YEVPRI---AFVNKMDK-- 139 (689)
T ss_pred --eEEEEEECCCCcchh-------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH-cCCCEE---EEEECCCC--
Confidence 789999999996432 256677899999999999965321000 0000000 000000 11222221
Q ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHH-HhhhhccceEEecc----cccccc
Q 014450 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQ-LCLLTMKPIIYVAN----VAESDL 271 (424)
Q Consensus 197 ~~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~-~~~l~~kpi~y~~n----v~~~~~ 271 (424)
.+.....+++.+.+.+..........++... -+.. +.....++..|... ....++
T Consensus 140 ------------------~~~~~~~~~~~i~~~l~~~~~~~~ipis~~~--~~~~~id~~~~~~~~~~~~~~~~~~~~~~ 199 (689)
T TIGR00484 140 ------------------TGANFLRVVNQIKQRLGANAVPIQLPIGAED--NFIGVIDLVEMKAYFFNGDKGTKAIEKEI 199 (689)
T ss_pred ------------------CCCCHHHHHHHHHHHhCCCceeEEeccccCC--CceEEEECccceEEecccCCCceeeeccC
Confidence 1122445666676666432210000111110 0110 12223344444211 111111
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 272 ADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
+ .+..+.+.++ .-.+-+.+++.+++.+++||++..++...+.+.++.++....++|||-.
T Consensus 200 ~----~~~~~~~~~~-----------~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~~~~~~~~~PV~~g 259 (689)
T TIGR00484 200 P----SDLLEQAKEL-----------RENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRKGVLNCEFFPVLCG 259 (689)
T ss_pred C----HHHHHHHHHH-----------HHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCEEEEEec
Confidence 1 2222233332 3345667888999999999998777777888888888888899999953
No 84
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.38 E-value=5e-13 Score=118.47 Aligned_cols=147 Identities=15% Similarity=0.119 Sum_probs=86.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|++++.. . ++.++.++.+.....+.+.+. ...+.+|||||..+.
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~-- 63 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-F-VTDYDPTIEDSYTKQCEIDGQ---------------WAILDILDTAGQEEF-- 63 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceEEEEEEECCE---------------EEEEEEEECCCCcch--
Confidence 699999999999999999999543 2 344455554433333333331 256889999997432
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
.......++.+|++++|+|+++...+..+....+. ..+++++ ++.++.|...+ ....+.+
T Consensus 64 -----~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---iv~NK~Dl~~~~~~~~~~~~~~~~ 135 (164)
T cd04145 64 -----SAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI---LVGNKADLEHQRKVSREEGQELAR 135 (164)
T ss_pred -----hHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEE---EEeeCccccccceecHHHHHHHHH
Confidence 22333556889999999999875432211111100 1122333 34555553321 1111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.. ....+||+++.++.++++.+.+.+
T Consensus 136 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 136 KLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 11 112369999999999999887654
No 85
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.38 E-value=5.1e-13 Score=119.62 Aligned_cols=149 Identities=17% Similarity=0.162 Sum_probs=87.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||||||||+|++++ ........|..+.+.....+..++. ...+.+|||||...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~-~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~g~~~-- 64 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE-DSFNPSFISTIGIDFKIRTIELDGK---------------KIKLQIWDTAGQER-- 64 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh-CcCCcccccCccceEEEEEEEECCE---------------EEEEEEEeCCchHH--
Confidence 47999999999999999999994 4333333343333333333444431 15689999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
+.......+++||++++|+|+++...+..+..+... ..+.+.+ ++.++.|..+.+ ...+.+
T Consensus 65 -----~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i---iv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T cd01867 65 -----FRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERM---LVGNKCDMEEKRVVSKEEGEALAD 136 (167)
T ss_pred -----HHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE---EEEECcccccccCCCHHHHHHHHH
Confidence 222344567899999999999765543222111110 0122222 334444443211 111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.. +...+||+++.++.++++.+.+.+
T Consensus 137 ~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 137 EYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 11 112379999999999999888765
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.37 E-value=9.6e-13 Score=116.54 Aligned_cols=149 Identities=15% Similarity=0.156 Sum_probs=86.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|++++.. ......+..+.+.....+..++. ..++.+|||||..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~---- 60 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK-FSEQYKSTIGVDFKTKTIEVDGK---------------RVKLQIWDTAGQE---- 60 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChH----
Confidence 489999999999999999999443 33333444444444334444331 1568999999962
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
.+.......++.||++++|+|+++......+..+.+-+ .+++++ ++.++.|.... ....+.+.
T Consensus 61 ---~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~piv---vv~nK~D~~~~~~~~~~~~~~~~~~ 134 (164)
T smart00175 61 ---RFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIM---LVGNKSDLEDQRQVSREEAEAFAEE 134 (164)
T ss_pred ---HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEEchhcccccCCCHHHHHHHHHH
Confidence 22223344568899999999997765432211110000 122222 33455553321 11111111
Q ss_pred c--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 K--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. .....|++++.++.++++.+.+.+.
T Consensus 135 ~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 135 HGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1 1112689999999999999887764
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.37 E-value=9.1e-13 Score=117.76 Aligned_cols=149 Identities=18% Similarity=0.189 Sum_probs=86.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|++++ ........+..+.+.....+.+++. ..++.+|||||...
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~--- 61 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN-KKFSNQYKATIGADFLTKEVTVDDK---------------LVTLQIWDTAGQER--- 61 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-CCCCcCcCCccceEEEEEEEEECCE---------------EEEEEEEeCCChHH---
Confidence 4899999999999999999994 4333222233333333333444431 25688999999632
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccc-------ccc--CCchhhhhhhhhcccHHHHH------HHHHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK-------VDP--KSDVDVINLELVFSDLDQIE------KRMEK 201 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~-------~dp--~~d~~~i~~el~~~~~~~i~------~~~~~ 201 (424)
+.......++.||++++|+|+++...+..+... ..+ ..+++++ ++.++.|... .....
T Consensus 62 ----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i---lv~nK~Dl~~~~~~~~~~~~~ 134 (172)
T cd01862 62 ----FQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFV---VLGNKIDLEEKRQVSTKKAQQ 134 (172)
T ss_pred ----HHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEE---EEEECcccccccccCHHHHHH
Confidence 222344567889999999999876532211110 000 0123333 4456665541 11111
Q ss_pred HHhhcc---CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LKKGKA---KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.+... ...+|++++.|+.++++.+.+.+-
T Consensus 135 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 135 WCQSNGNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred HHHHcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111111 112699999999999998887654
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.37 E-value=2.5e-11 Score=107.43 Aligned_cols=83 Identities=18% Similarity=0.163 Sum_probs=53.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|+|++... .....|..+.+.....+...+. ..++.+|||||....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~-- 62 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF-DPDLAATIGVDFKVKTLTVDGK---------------KVKLAIWDTAGQERF-- 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC-CcccCCcccceEEEEEEEECCE---------------EEEEEEEECCCchhh--
Confidence 4899999999999999999994433 2222333332222222333221 156899999996322
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.......++.+|++++|+|++
T Consensus 63 -----~~~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 63 -----RTLTSSYYRGAQGVILVYDVT 83 (161)
T ss_pred -----hhhhHHHhCCCCEEEEEEECC
Confidence 223344568899999999974
No 89
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.36 E-value=7.4e-13 Score=118.11 Aligned_cols=148 Identities=13% Similarity=0.103 Sum_probs=85.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||++++.++... ....+..+.+.....+..++. ...+.+|||||..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~--- 63 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFS-ERQGNTIGVDFTMKTLEIEGK---------------RVKLQIWDTAGQE--- 63 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCc-ccCCCccceEEEEEEEEECCE---------------EEEEEEEECCChH---
Confidence 479999999999999999999844322 111222222333333333331 1468999999962
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
.+.......++.+|++++|+|+++...+..+..+.+. ..+++++ ++.+++|..+. ....+.+
T Consensus 64 ----~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i---vv~nK~Dl~~~~~~~~~~~~~~~~ 136 (165)
T cd01864 64 ----RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLL---LIGNKCDLEEQREVLFEEACTLAE 136 (165)
T ss_pred ----HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEE---EEEECcccccccccCHHHHHHHHH
Confidence 2223345567889999999999886543222111110 1122233 44556654322 1112222
Q ss_pred hccC---CCcchhhHHHHHHHHHHHHHH
Q 014450 205 GKAK---DSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 205 ~~~~---~~~Sak~~~~~~~ll~~i~~~ 229 (424)
.... ..+||+++.++.++++.+.+.
T Consensus 137 ~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 137 KNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 2111 236999999999999888764
No 90
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.36 E-value=1.1e-11 Score=113.56 Aligned_cols=155 Identities=20% Similarity=0.235 Sum_probs=89.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++|+++|.+|||||||+|+|++.. .+.+++.+++|+......+ + .++.||||||+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-----------------~~l~l~DtpG~~ 81 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---N-----------------DKLRLVDLPGYG 81 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---C-----------------CeEEEeCCCCCC
Confidence 346899999999999999999999654 6778888888876543321 1 469999999975
Q ss_pred CCCCcc---c---chhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHH-----HHH
Q 014450 133 KGASQG---E---GLGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIE-----KRM 199 (424)
Q Consensus 133 ~~~~~~---~---~~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~-----~~~ 199 (424)
...... + .+...++.....++++++|+|+........ +...... ..++.+ ++.++.|.+. ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~~~~i---iv~nK~Dl~~~~~~~~~~ 157 (196)
T PRK00454 82 YAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YGIPVL---IVLTKADKLKKGERKKQL 157 (196)
T ss_pred CcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cCCcEE---EEEECcccCCHHHHHHHH
Confidence 432111 1 122333444456688999999765321100 0000000 001111 2344444322 111
Q ss_pred HHHHhhcc-----CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 200 EKLKKGKA-----KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 200 ~~i~k~~~-----~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+..... ...+||+++.++.++++.+.+.+.+
T Consensus 158 ~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 158 KKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 11222211 1126889999999999988887754
No 91
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.36 E-value=1.2e-12 Score=139.81 Aligned_cols=145 Identities=26% Similarity=0.353 Sum_probs=96.0
Q ss_pred ecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc--ccc
Q 014450 63 GLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--GEG 140 (424)
Q Consensus 63 G~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~--~~~ 140 (424)
|.||||||||+|+|+| ....++++|++|++...+.+.+++ .++.++||||..+.... .+.
T Consensus 1 G~pNvGKSSL~N~Ltg-~~~~v~n~pG~Tv~~~~~~i~~~~-----------------~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG-ANQTVGNWPGVTVEKKEGKLGFQG-----------------EDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHhC-CCCeecCCCCeEEEEEEEEEEECC-----------------eEEEEEECCCccccCccchHHH
Confidence 8999999999999994 456899999999999999888765 56899999999754432 222
Q ss_pred hhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC--CCcch
Q 014450 141 LGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK--DSQSK 213 (424)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~--~~~Sa 213 (424)
+...++. .+.+|++++|+|+++.+........... .+.+.+ ++.|+.|..+++ ...+.+.... -.+||
T Consensus 63 v~~~~l~-~~~aDvvI~VvDat~ler~l~l~~ql~~-~~~PiI---IVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA 137 (591)
T TIGR00437 63 VARDYLL-NEKPDLVVNVVDASNLERNLYLTLQLLE-LGIPMI---LALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSA 137 (591)
T ss_pred HHHHHHh-hcCCCEEEEEecCCcchhhHHHHHHHHh-cCCCEE---EEEehhHHHHhCCChhhHHHHHHHcCCCEEEEEC
Confidence 2233322 3579999999999764321110000000 112233 457888765542 1223332221 12699
Q ss_pred hhHHHHHHHHHHHHHHH
Q 014450 214 LKEDAEKAALEKIQQAL 230 (424)
Q Consensus 214 k~~~~~~~ll~~i~~~L 230 (424)
+++.|++++++.+.+..
T Consensus 138 ~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 138 TEGRGIERLKDAIRKAI 154 (591)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 92
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.5e-12 Score=120.59 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=90.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecC-CCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~-~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
++|+++|.+|||||||+|+++++ .......|..+.+.....+.++ +. ...+.+|||||...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~-~~~~~~~~t~~~d~~~~~v~~~~~~---------------~~~l~l~Dt~G~~~-- 62 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG-IFSQHYKATIGVDFALKVIEWDPNT---------------VVRLQLWDIAGQER-- 62 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCceeEEEEEEEEEECCCC---------------EEEEEEEECCCchh--
Confidence 48999999999999999999944 3222223333333333344443 21 25689999999732
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc---------cCCchhhhhhhhhcccHHHHHH------HHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD---------PKSDVDVINLELVFSDLDQIEK------RME 200 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d---------p~~d~~~i~~el~~~~~~~i~~------~~~ 200 (424)
+.......+++||++++|+|++++.++..+..+.+ ...+++++ ++.++.|.... ...
T Consensus 63 -----~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~ 134 (201)
T cd04107 63 -----FGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCL---LLANKCDLKKRLAKDGEQMD 134 (201)
T ss_pred -----hhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEE---EEEECCCcccccccCHHHHH
Confidence 22234556789999999999987655322211100 01233334 45566665311 111
Q ss_pred HHHhhcc---CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 KLKKGKA---KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.+... ...+||+++.++.++++.+.+.+..
T Consensus 135 ~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 135 QFCKENGFIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2212111 1126999999999999999887754
No 93
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.35 E-value=1.3e-12 Score=117.88 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=82.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCcccc-----C---------CCCccccceEEEeecCCCcchhhccccccccccCceE
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA-----N---------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s-----~---------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i 123 (424)
+|+++|.+|+|||||+|+|++...+... . ..++|..+....+.+. +......++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~------------~~~~~~~~~ 69 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYK------------AKDGQEYLL 69 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEe------------cCCCCcEEE
Confidence 6999999999999999999953321110 0 1122332222222110 000113678
Q ss_pred EEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-CCchhhhhhhhhcccHHHHHH----H
Q 014450 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-KSDVDVINLELVFSDLDQIEK----R 198 (424)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-~~d~~~i~~el~~~~~~~i~~----~ 198 (424)
.||||||..+. ...+...++.+|++++|+|+++............. ...++.+ ++.+++|..+. .
T Consensus 70 ~l~Dt~G~~~~-------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~ii---iv~NK~Dl~~~~~~~~ 139 (179)
T cd01890 70 NLIDTPGHVDF-------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII---PVINKIDLPSADPERV 139 (179)
T ss_pred EEEECCCChhh-------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEE---EEEECCCCCcCCHHHH
Confidence 99999998543 33555678899999999999764321000000000 0011122 33455443211 1
Q ss_pred HHHHHhhccC-----CCcchhhHHHHHHHHHHHHHHHh
Q 014450 199 MEKLKKGKAK-----DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 199 ~~~i~k~~~~-----~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+.+.... ..+||+++.+++++++.+.+.+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 140 KQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1122222111 13799999999999999987764
No 94
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.35 E-value=1.4e-12 Score=115.47 Aligned_cols=147 Identities=14% Similarity=0.100 Sum_probs=86.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|++.++.. +..++.|+.+.....+.+++. ...+.+|||||......
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQ---------------QCMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCE---------------EEEEEEEECCCccccch
Confidence 6899999999999999999994432 233444444444444444431 15678999999743322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
.....++.+|++++|+|.++...+..+.... ....+.+++ ++.++.|.... ....+.+
T Consensus 65 -------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 134 (163)
T cd04136 65 -------MRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMV---LVGNKCDLEDERVVSREEGQALAR 134 (163)
T ss_pred -------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccccccceecHHHHHHHHH
Confidence 2234468899999999998765422111100 011123333 34555554221 1111222
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ...+||+++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 135 QWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 111 12369999999999999887653
No 95
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.35 E-value=1.2e-12 Score=117.04 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=79.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|+||||||||+|+|+|.... . ...+.+.+.. . .+|||||+.....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~-----~~~~~v~~~~-----------------~--~~iDtpG~~~~~~- 52 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----A-----RKTQAVEFND-----------------K--GDIDTPGEYFSHP- 52 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----C-----ccceEEEECC-----------------C--CcccCCccccCCH-
Confidence 7999999999999999999954311 0 1112222221 1 2699999854322
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-CchhhhhhhhhcccHHHHHHH----HHHHHhhc---cCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-SDVDVINLELVFSDLDQIEKR----MEKLKKGK---AKD 209 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-~d~~~i~~el~~~~~~~i~~~----~~~i~k~~---~~~ 209 (424)
.+.......++.||++++|+|+++....... ..... ...+++ ++.++.|..... ...+.+.. +..
T Consensus 53 --~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~--~~~~~~~~~~ii---~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~ 125 (158)
T PRK15467 53 --RWYHALITTLQDVDMLIYVHGANDPESRLPA--GLLDIGVSKRQI---AVISKTDMPDADVAATRKLLLETGFEEPIF 125 (158)
T ss_pred --HHHHHHHHHHhcCCEEEEEEeCCCcccccCH--HHHhccCCCCeE---EEEEccccCcccHHHHHHHHHHcCCCCCEE
Confidence 2334445668999999999999866432110 00000 011111 233444432211 12222221 112
Q ss_pred CcchhhHHHHHHHHHHHHHHHhC
Q 014450 210 SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 210 ~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+||+++.+++++++.+.+.+++
T Consensus 126 ~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 126 ELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred EEECCCccCHHHHHHHHHHhchh
Confidence 26999999999999999888753
No 96
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.34 E-value=1.9e-12 Score=115.28 Aligned_cols=147 Identities=15% Similarity=0.100 Sum_probs=88.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+++++.+ .. +.+++.|+.+.....+.+.+. ...+.+|||||.....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~- 63 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQG-IF-VEKYDPTIEDSYRKQVEVDGQ---------------QCMLEILDTAGTEQFT- 63 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhC-CC-CcccCCcchheEEEEEEECCE---------------EEEEEEEECCCcccch-
Confidence 68999999999999999999933 32 344555554444334444331 1457899999974332
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
......++.+|++++|+|.++..++..+.... ....+++++ ++.++.|.... ....+.+
T Consensus 64 ------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 134 (164)
T cd04175 64 ------AMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMI---LVGNKCDLEDERVVGKEQGQNLAR 134 (164)
T ss_pred ------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECCcchhccEEcHHHHHHHHH
Confidence 23334578899999999987655422111110 011233344 45566655332 1112222
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.... -.+||+++.++.+++..+.+.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 135 QWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1111 1369999999999999988766
No 97
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.34 E-value=1.1e-12 Score=116.21 Aligned_cols=147 Identities=20% Similarity=0.193 Sum_probs=85.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.||||||||+|+|++.. ......+..+.+.....+.+++. ...+.+|||||...
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~--- 61 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK-FKEDSQHTIGVEFGSKIIRVGGK---------------RVKLQIWDTAGQER--- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCE---------------EEEEEEEECcchHH---
Confidence 489999999999999999999443 22223333333333334444331 15689999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
+.......++.+|++++|+|+++...+..+...... ..+++++ ++.++.|..+.+ ...+.+.
T Consensus 62 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii---vv~nK~D~~~~~~~~~~~~~~~~~~ 134 (161)
T cd04113 62 ----FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVI---LVGNKSDLADQREVTFLEASRFAQE 134 (161)
T ss_pred ----HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEEchhcchhccCCHHHHHHHHHH
Confidence 222344567889999999999876543221111000 0122333 445666654321 1111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
.. ...+||+++.++.++++.+.+.
T Consensus 135 ~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 135 NGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 11 1126999999999998887653
No 98
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.33 E-value=4.4e-12 Score=114.80 Aligned_cols=83 Identities=23% Similarity=0.279 Sum_probs=57.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCcccc---------------CCCCccccceEEEeecCCCcchhhccccccccccCce
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s---------------~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 122 (424)
+|+++|.+|||||||+|+|++....... ...++|.+.....+... ...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-----------------DRR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC-----------------CEE
Confidence 4899999999999999999965443221 11233433333333322 267
Q ss_pred EEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.||||||+.. +...+...++.+|++++|+|+++.
T Consensus 64 ~~liDtpG~~~-------~~~~~~~~~~~~d~~i~v~d~~~~ 98 (189)
T cd00881 64 VNFIDTPGHED-------FSSEVIRGLSVSDGAILVVDANEG 98 (189)
T ss_pred EEEEeCCCcHH-------HHHHHHHHHHhcCEEEEEEECCCC
Confidence 99999999742 334566677899999999999764
No 99
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.33 E-value=1.3e-12 Score=116.78 Aligned_cols=147 Identities=17% Similarity=0.148 Sum_probs=84.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccce-EEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
+||+++|.+|||||||+++++++. . ...++.|+.... .-.+...+. ...+.+|||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~--- 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK-F-MADCPHTIGVEFGTRIIEVNGQ---------------KIKLQIWDTAGQE--- 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCcccceeEEEEEEEECCE---------------EEEEEEEECCCcH---
Confidence 689999999999999999999443 2 223333322111 122333331 2568999999963
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
.+.......++++|++++|+|.++..++..+..+.+.+ .+.+++ ++.++.|..+.+ ...+.+
T Consensus 63 ----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii---iv~nK~Dl~~~~~~~~~~~~~~~~ 135 (166)
T cd04122 63 ----RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIF---LIGNKADLEAQRDVTYEEAKQFAD 135 (166)
T ss_pred ----HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECcccccccCcCHHHHHHHHH
Confidence 22234456688999999999998765432222111110 112222 345555543221 111111
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.... ..+||+++.|+.+++..+...+
T Consensus 136 ~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1111 1269999999999888776544
No 100
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.32 E-value=2.2e-12 Score=114.59 Aligned_cols=148 Identities=14% Similarity=0.120 Sum_probs=85.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|++++.... ..++.|+.+...-...+++. ...+.+|||||..+..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~- 62 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGE---------------VCLLDILDTAGQEEFS- 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCE---------------EEEEEEEECCCcccch-
Confidence 48999999999999999999954422 23333443333323333321 2568899999974322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
......++.+|++++|+|+.+...+..+..... ...+.+++ ++.++.|.... ....+.+
T Consensus 63 ------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---~v~nK~Dl~~~~~~~~~~~~~~~~ 133 (164)
T smart00173 63 ------AMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIV---LVGNKCDLESERVVSTEEGKELAR 133 (164)
T ss_pred ------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccccccceEcHHHHHHHHH
Confidence 123345678999999999987543211111000 00122333 34555554321 1111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.++.++++.+.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 134 QWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 111 123699999999999999987763
No 101
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=5.5e-12 Score=119.54 Aligned_cols=96 Identities=15% Similarity=0.188 Sum_probs=78.7
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...+++|-|+|.+|||||||+|||.++....++..+.+|..++.-...+++ ..+.||||||+-
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~g 98 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLG 98 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcc
Confidence 345788889999999999999999988888888888777655544444443 559999999998
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
++...+..+...++..+...|++|+++++.+..
T Consensus 99 dg~~~D~~~r~~~~d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 99 DGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred cchhhhHHHHHHHHHHhhhccEEEEeccCCCcc
Confidence 877766677788899999999999999997653
No 102
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.32 E-value=2.5e-12 Score=113.93 Aligned_cols=148 Identities=15% Similarity=0.131 Sum_probs=82.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|+|||||+|+++++. ......|..+.+.....+.++.. .....+.+|||||..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~G~~---- 62 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQS-------------DEDVRLMLWDTAGQE---- 62 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCC-------------CCEEEEEEeeCCchH----
Confidence 489999999999999999999443 22222233333322222333200 012569999999962
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc----CCchhhhhhhhhcccHHHHHHH------HHHHHhhc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP----KSDVDVINLELVFSDLDQIEKR------MEKLKKGK 206 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~~ 206 (424)
.+.......++.+|++++|+|+++...+..+..+... ..+++++ ++.++.|..... ...+.+..
T Consensus 63 ---~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~i---iv~nK~Dl~~~~~v~~~~~~~~~~~~ 136 (162)
T cd04106 63 ---EFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMV---LVQTKIDLLDQAVITNEEAEALAKRL 136 (162)
T ss_pred ---HHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE---EEEEChhcccccCCCHHHHHHHHHHc
Confidence 2222345567899999999999776543222111100 1123333 456666654321 11111111
Q ss_pred cC--CCcchhhHHHHHHHHHHHHH
Q 014450 207 AK--DSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 207 ~~--~~~Sak~~~~~~~ll~~i~~ 228 (424)
.. ..+||+++.+++++++.+.+
T Consensus 137 ~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 11 12688888888888877654
No 103
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.31 E-value=2e-11 Score=108.63 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=59.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+.|+++|.+|+|||||+|+|++.. ......+++|.+.....+.... .....+.++||||...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~iiDtpG~~~--- 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEV--------------LKIPGITFIDTPGHEA--- 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEeccc--------------CCcceEEEEeCCCcHH---
Confidence 469999999999999999999443 3344556677665544444320 0025699999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.......++.+|++++|+|+++.
T Consensus 63 ----~~~~~~~~~~~~d~il~v~d~~~~ 86 (168)
T cd01887 63 ----FTNMRARGASLTDIAILVVAADDG 86 (168)
T ss_pred ----HHHHHHHHHhhcCEEEEEEECCCC
Confidence 222333456889999999999764
No 104
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.31 E-value=2.3e-12 Score=114.25 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=82.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|+++.... ...|.++.......+.+.+. ...+.+|||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~---------------~~~~~i~D~~G~~~--- 62 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDT---------------TVKFEIWDTAGQER--- 62 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCE---------------EEEEEEEeCCchHH---
Confidence 689999999999999999999554332 22222221122223333331 25689999999522
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
+.......++.+|++++|+|+++...+.........+ ...+++ ++.++.|.... ....+.+.
T Consensus 63 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii---vv~nK~D~~~~~~~~~~~~~~~~~~ 135 (163)
T cd01860 63 ----YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIA---LVGNKADLESKRQVSTEEAQEYADE 135 (163)
T ss_pred ----HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECccccccCcCCHHHHHHHHHH
Confidence 2122234578899999999998765432111110000 111122 23344443311 11111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.. ...+||+++.++.++++.+.+.+
T Consensus 136 ~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 136 NGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 11 12369999999999999988776
No 105
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.31 E-value=1.5e-12 Score=119.02 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=61.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||+|++++..... ..+|..+..+.+...+ .++.++||||...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~-- 73 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ----HQPTQHPTSEELAIGN-----------------IKFTTFDLGGHQQ-- 73 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccccceEEEEECC-----------------EEEEEEECCCCHH--
Confidence 4899999999999999999999654322 2345666666665544 6799999999732
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
....+...++++|++++|+|++++.
T Consensus 74 -----~~~~~~~~~~~ad~ii~vvD~~~~~ 98 (184)
T smart00178 74 -----ARRLWKDYFPEVNGIVYLVDAYDKE 98 (184)
T ss_pred -----HHHHHHHHhCCCCEEEEEEECCcHH
Confidence 2224456678999999999998764
No 106
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.31 E-value=3.2e-12 Score=117.30 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=87.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+.+. ...+.||||||....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~--- 60 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQ---------------PCMLEVLDTAGQEEY--- 60 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCE---------------EEEEEEEECCCchhh---
Confidence 589999999999999999994432 223444443333333333331 145889999996322
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc--------CCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP--------KSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp--------~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
.......++.+|++++|+|+++..++..+....+. ..+.+++ ++.++.|.... ....+.
T Consensus 61 ----~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii---lvgNK~Dl~~~~~v~~~~~~~~~ 133 (190)
T cd04144 61 ----TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIM---IVGNKCDKVYEREVSTEEGAALA 133 (190)
T ss_pred ----HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEE---EEEEChhccccCccCHHHHHHHH
Confidence 22334567889999999999876543221111111 1223333 45677665321 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... ...+||+++.++.++++.+.+.+.
T Consensus 134 ~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 134 RRLGCEFIEASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred HHhCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1111 123699999999999998887663
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.31 E-value=1.5e-12 Score=117.35 Aligned_cols=142 Identities=13% Similarity=0.199 Sum_probs=80.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++....... .|.......+.+.+ ..+.+|||||...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~----~t~g~~~~~~~~~~-----------------~~l~l~D~~G~~~- 70 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTIS----PTLGFQIKTLEYEG-----------------YKLNIWDVGGQKT- 70 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECC-----------------EEEEEEECCCCHH-
Confidence 3579999999999999999999955322111 12112222233322 5689999999732
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH-HHHHHHhhc-
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK-RMEKLKKGK- 206 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~- 206 (424)
+...+...++.+|++++|+|+++...+....... ....+.+++ ++.++.|..+. ....+....
T Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i---iv~nK~Dl~~~~~~~~~~~~~~ 141 (173)
T cd04154 71 ------LRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLL---ILANKQDLPGALSEEEIREALE 141 (173)
T ss_pred ------HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEE---EEEECcccccCCCHHHHHHHhC
Confidence 2223455678999999999998764321110000 001122333 44555554321 011111111
Q ss_pred ---------cCCCcchhhHHHHHHHHHHHH
Q 014450 207 ---------AKDSQSKLKEDAEKAALEKIQ 227 (424)
Q Consensus 207 ---------~~~~~Sak~~~~~~~ll~~i~ 227 (424)
+.-.+||+++.+++++++.+.
T Consensus 142 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 111269999999999888764
No 108
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.30 E-value=1.4e-11 Score=106.76 Aligned_cols=90 Identities=24% Similarity=0.271 Sum_probs=70.8
Q ss_pred EEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcccc
Q 014450 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (424)
Q Consensus 61 ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~ 140 (424)
|+|.+|+|||||+|+|++......++.+++|..+........+ ...+.++||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999976666688888889888777665542 156999999999766554443
Q ss_pred hhhhhhhhhhccceEEEEeecCCCCc
Q 014450 141 LGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
....+...++.+|++++|+|++....
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~~~~ 90 (163)
T cd00880 65 REELARRVLERADLILFVVDADLRAD 90 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCC
Confidence 34566677899999999999987654
No 109
>PLN03118 Rab family protein; Provisional
Probab=99.30 E-value=4.1e-12 Score=118.57 Aligned_cols=153 Identities=17% Similarity=0.189 Sum_probs=88.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.....+ |.++.+.....+.+++. ..++.||||||....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLA--PTIGVDFKIKQLTVGGK---------------RLKLTIWDTAGQERF 75 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcC--CCceeEEEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 4589999999999999999999965433222 22222222233333331 156899999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecc-------ccccCCchhhhhhhhhcccHHHHHH------HHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-------KVDPKSDVDVINLELVFSDLDQIEK------RMEK 201 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-------~~dp~~d~~~i~~el~~~~~~~i~~------~~~~ 201 (424)
. ......++.+|++++|+|+++...+..+.. ...+..+...+ ++.++.|.... ....
T Consensus 76 ~-------~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~i---lv~NK~Dl~~~~~i~~~~~~~ 145 (211)
T PLN03118 76 R-------TLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKM---LVGNKVDRESERDVSREEGMA 145 (211)
T ss_pred H-------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccccccCccCHHHHHH
Confidence 2 233455789999999999987654322110 00111122222 33444443211 1111
Q ss_pred HHhhccC--CCcchhhHHHHHHHHHHHHHHHhCCC
Q 014450 202 LKKGKAK--DSQSKLKEDAEKAALEKIQQALMDGK 234 (424)
Q Consensus 202 i~k~~~~--~~~Sak~~~~~~~ll~~i~~~L~~~~ 234 (424)
+.+.... ..+||+++.+++++++.+.+.+...+
T Consensus 146 ~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 146 LAKEHGCLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 1111111 13699999999999999998886543
No 110
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.30 E-value=5.7e-12 Score=127.20 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=111.9
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.........|+|+|||||||++|.++ .....+.+|||||..-..|.+.+.- -.++++||||+
T Consensus 164 IDp~trTlllcG~PNVGKSSf~~~vt-radvevqpYaFTTksL~vGH~dykY-----------------lrwQViDTPGI 225 (620)
T KOG1490|consen 164 IDPNTRTLLVCGYPNVGKSSFNNKVT-RADDEVQPYAFTTKLLLVGHLDYKY-----------------LRWQVIDTPGI 225 (620)
T ss_pred CCCCcCeEEEecCCCCCcHhhccccc-ccccccCCcccccchhhhhhhhhhe-----------------eeeeecCCccc
Confidence 34445789999999999999999999 8889999999999988888776643 56899999999
Q ss_pred CCCCCcccc----hhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhcc
Q 014450 132 VKGASQGEG----LGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA 207 (424)
Q Consensus 132 ~~~~~~~~~----~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~ 207 (424)
.+..-+... ..-.++++++.| +|++.|.|+.-. .-+ +
T Consensus 226 LD~plEdrN~IEmqsITALAHLraa--VLYfmDLSe~CG-----------------------ySv---a----------- 266 (620)
T KOG1490|consen 226 LDRPEEDRNIIEMQIITALAHLRSA--VLYFMDLSEMCG-----------------------YSV---A----------- 266 (620)
T ss_pred cCcchhhhhHHHHHHHHHHHHhhhh--heeeeechhhhC-----------------------CCH---H-----------
Confidence 754332111 112447778866 889988753210 000 0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHH
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 287 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~ 287 (424)
....|+..|.. +...||++.++|+.+.--++.-+++..+-++...
T Consensus 267 ----------~QvkLfhsIKp-------------------------LFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 267 ----------AQVKLYHSIKP-------------------------LFANKVTILVLNKIDAMRPEDLDQKNQELLQTII 311 (620)
T ss_pred ----------HHHHHHHHhHH-------------------------HhcCCceEEEeecccccCccccCHHHHHHHHHHH
Confidence 01122222211 2378999999999864223221222333344443
Q ss_pred hhcCCcEEEecHHhHHHHcCCCHHHHHHHH
Q 014450 288 SDLQSGRVTISAQVEAELTELPSEERVEYL 317 (424)
Q Consensus 288 ~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l 317 (424)
...+.+++.+|...|+.+.+...+.-+..|
T Consensus 312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 312 DDGNVKVVQTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred hccCceEEEecccchhceeeHHHHHHHHHH
Confidence 334578999999988888766443333333
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.30 E-value=1.9e-12 Score=114.54 Aligned_cols=141 Identities=18% Similarity=0.180 Sum_probs=78.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+++|++... ..+.+. .|.......+... ...+.+|||||..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~-~~~~~~-~t~g~~~~~~~~~-----------------~~~~~l~Dt~G~~~~--- 58 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA-QSQIIV-PTVGFNVESFEKG-----------------NLSFTAFDMSGQGKY--- 58 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC-Ccceec-CccccceEEEEEC-----------------CEEEEEEECCCCHhh---
Confidence 589999999999999999995432 111111 1222222222222 267999999997432
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccc------cccC--CchhhhhhhhhcccHHHHHH-HHHHHH---hh
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK------VDPK--SDVDVINLELVFSDLDQIEK-RMEKLK---KG 205 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~------~dp~--~d~~~i~~el~~~~~~~i~~-~~~~i~---k~ 205 (424)
.......++.+|++++|+|+++...+...... ...+ ..++++ ++.++.|.... ....+. ..
T Consensus 59 ----~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i---iv~NK~Dl~~~~~~~~~~~~l~~ 131 (162)
T cd04157 59 ----RGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPIL---FFANKMDLPDALTAVKITQLLGL 131 (162)
T ss_pred ----HHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEE---EEEeCccccCCCCHHHHHHHhCC
Confidence 22334557899999999999875432110000 0000 123333 45666654322 111111 11
Q ss_pred cc-------CCCcchhhHHHHHHHHHHHH
Q 014450 206 KA-------KDSQSKLKEDAEKAALEKIQ 227 (424)
Q Consensus 206 ~~-------~~~~Sak~~~~~~~ll~~i~ 227 (424)
.. ...+||+++.+++++++.+.
T Consensus 132 ~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 132 ENIKDKPWHIFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred ccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence 10 11268999999999988764
No 112
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.30 E-value=4.1e-12 Score=113.42 Aligned_cols=149 Identities=15% Similarity=0.166 Sum_probs=86.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||++++++ ........+..+.+.....+.+.+. ...+.++||||...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~-- 68 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ-GLFPPGQGATIGVDFMIKTVEIKGE---------------KIKLQIWDTAGQER-- 68 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh-CCCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCCcHH--
Confidence 47999999999999999999994 3333333344444444444544431 14588999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
+.......++.+|++++|+|+++...+..+..+...+ .+.+.+ ++.++.|....+ ...+.+
T Consensus 69 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i---~v~NK~D~~~~~~i~~~~~~~~~~ 140 (169)
T cd04114 69 -----FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITI---LVGNKIDLAERREVSQQRAEEFSD 140 (169)
T ss_pred -----HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECcccccccccCHHHHHHHHH
Confidence 2223345678899999999987654321111110000 112222 345555543211 111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ...+||+++.++.++++.+.+.+
T Consensus 141 ~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 141 AQDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 111 12368999999999999887653
No 113
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.29 E-value=1.2e-11 Score=113.67 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=64.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcC------CCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~------~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
.+|+++|.+|+|||||+|+|++. .....+..+++|++.....+.+...... .. .........++.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHL--RE-LINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccc--cc-cccccccCceEEEEECCC
Confidence 47999999999999999999952 2233344567787776655544310000 00 000001136799999999
Q ss_pred CCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.. .+...+...+..+|++++|+|+++.
T Consensus 78 ~~-------~~~~~~~~~~~~~d~vi~VvD~~~~ 104 (192)
T cd01889 78 HA-------SLIRTIIGGAQIIDLMLLVVDATKG 104 (192)
T ss_pred cH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 72 3445666777889999999999764
No 114
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.29 E-value=6.1e-12 Score=113.69 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=88.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+||+++|.+|||||||+|++++ ........|..+.+.....+....... .. .........+.||||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~i~Dt~G~~--- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTD-NKFNPKFITTVGIDFREKRVVYNSSGP---GG--TLGRGQRIHLQLWDTAGQE--- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc-CCCCccCCCccceEEEEEEEEEcCccc---cc--cccCCCEEEEEEEeCCChH---
Confidence 47999999999999999999994 333222223222233223333221000 00 0000112568999999962
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
.+.......++++|++++|+|+++..++..+..+... ....+++ ++.++.|..+. ....+.
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---iv~nK~Dl~~~~~v~~~~~~~~~ 147 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV---LCGNKADLEDQRQVSEEQAKALA 147 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE---EEEeCccchhcCccCHHHHHHHH
Confidence 2223345567899999999999876654332211110 0122333 45666665432 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+... ...+||+++.++.++++.+.+.+
T Consensus 148 ~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1111 12369999999999999887654
No 115
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.29 E-value=2.8e-12 Score=111.89 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=58.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+|++..... ...+..+.+.....+..+.. ...+.++|+||..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~---- 60 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDE-NYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQE---- 60 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCC-ccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChH----
Confidence 479999999999999999999544433 23343343333334443321 2568999999972
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
.+.......++++|++++|+|+++..
T Consensus 61 ---~~~~~~~~~~~~~d~ii~v~d~~~~~ 86 (159)
T cd00154 61 ---RFRSITPSYYRGAHGAILVYDITNRE 86 (159)
T ss_pred ---HHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 22234456678899999999998754
No 116
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.28 E-value=6.3e-12 Score=111.63 Aligned_cols=147 Identities=18% Similarity=0.152 Sum_probs=85.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||++++.++... . .+..|+.+.....+.+++. ...+.||||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI-E-KYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-C-CCCCchhheEEEEEEECCE---------------EEEEEEEECCCcccccc
Confidence 58999999999999999999944332 1 2222333333334444431 14588999999744332
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
.....+++||++++|+|.++..++..+..+... ..+++++ ++.++.|....+ ...+.+
T Consensus 65 -------~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piv---iv~nK~Dl~~~~~~~~~~~~~~~~ 134 (163)
T cd04176 65 -------MRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII---LVGNKVDLESEREVSSAEGRALAE 134 (163)
T ss_pred -------hHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccchhcCccCHHHHHHHHH
Confidence 233356889999999999876543222111111 1223333 456666643321 111111
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.... -.+||+++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 135 EWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 1111 1368999999999988887654
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.28 E-value=3.6e-12 Score=112.77 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=80.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|++++..... ..| |.......+..+. ...+.++||||..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~--~~~--t~~~~~~~~~~~~----------------~~~l~i~D~~G~~----- 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT--TIP--TVGFNVEMLQLEK----------------HLSLTVWDVGGQE----- 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc--ccC--ccCcceEEEEeCC----------------ceEEEEEECCCCH-----
Confidence 58999999999999999999654332 222 2222223333321 2569999999973
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH----HHH-HH--Hh
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK----RME-KL--KK 204 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~----~~~-~i--~k 204 (424)
.+...+...++.+|++++|+|+++...+..+.... ....+.+++ +++++.|.... .+. .+ ..
T Consensus 56 --~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~i~~~~~~~~ 130 (160)
T cd04156 56 --KMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVV---LLANKQDLPGALTAEEITRRFKLKK 130 (160)
T ss_pred --hHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEE---EEEECcccccCcCHHHHHHHcCCcc
Confidence 22234455688999999999998764321111000 001223333 44566654211 111 11 11
Q ss_pred hccC-----CCcchhhHHHHHHHHHHHH
Q 014450 205 GKAK-----DSQSKLKEDAEKAALEKIQ 227 (424)
Q Consensus 205 ~~~~-----~~~Sak~~~~~~~ll~~i~ 227 (424)
.... ...||+++.+++++++.|.
T Consensus 131 ~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 131 YCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cCCCCcEEEEecccccCCChHHHHHHHh
Confidence 1110 1259999999999988774
No 118
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.28 E-value=5.7e-12 Score=116.61 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=85.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||++++.+.. ......|..+.+.....+.+++. ...+.||||||...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~- 67 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGE---------------RVKLQIWDTAGQER- 67 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCccccceeEEEEEEECCE---------------EEEEEEEeCCCchh-
Confidence 45899999999999999999999443 22222222222222223333331 14688999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc----CCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP----KSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp----~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
+.......++.+|++++|+|+++..++..+..+... ....+++ ++.++.|..+. ....+.+
T Consensus 68 ------~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~pii---vVgNK~Dl~~~~~~~~~~~~~~~~ 138 (199)
T cd04110 68 ------FRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKV---LVGNKNDDPERKVVETEDAYKFAG 138 (199)
T ss_pred ------HHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEE---EEEECcccccccccCHHHHHHHHH
Confidence 223445567889999999999876543221111100 0112222 33444443221 1111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.++.++++.+.+.+-
T Consensus 139 ~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 139 QMGISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred HcCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 111 123699999999999998877663
No 119
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.28 E-value=6e-12 Score=113.51 Aligned_cols=148 Identities=18% Similarity=0.137 Sum_probs=87.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|++.+ ........|..+.+.....+.+.+. ..++.+|||||..+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~-~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~---- 61 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK-DVFDKNYKATIGVDFEMERFEILGV---------------PFSLQLWDTAGQER---- 61 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc-CCCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCChHH----
Confidence 799999999999999999994 4333222333333333334444332 25699999999732
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHHH--------HHHHH
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEKR--------MEKLK 203 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~~--------~~~i~ 203 (424)
+.......++.||++++|+|+++..++..+..+...+ .+.+++ ++.++.|..++. ...+.
T Consensus 62 ---~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ii---lVgnK~Dl~~~~~~~~~~~~~~~~~ 135 (170)
T cd04108 62 ---FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLF---LVGTKKDLSSPAQYALMEQDAIKLA 135 (170)
T ss_pred ---HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEE---EEEEChhcCccccccccHHHHHHHH
Confidence 2223455688999999999998755432221111110 112222 445666643221 11111
Q ss_pred hhccC--CCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKAK--DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~~--~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+..+. ...||+++.+++++++.+.+.+.
T Consensus 136 ~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 136 AEMQAEYWSVSALSGENVREFFFRVAALTF 165 (170)
T ss_pred HHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111 13699999999999999887764
No 120
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.28 E-value=5.2e-12 Score=113.07 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=85.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+++++ .........|..+.+.....+.+.+. ...+.+|||||..+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~-- 66 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV-TNKFDTQLFHTIGVEFLNKDLEVDGH---------------FVTLQIWDTAGQER-- 66 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH-cCCCCcCcCCceeeEEEEEEEEECCe---------------EEEEEEEeCCChHH--
Confidence 4799999999999999999999 44333333333332322223333331 25688999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc---------cCCchhhhhhhhhcccHHHHHH-----HHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD---------PKSDVDVINLELVFSDLDQIEK-----RMEK 201 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d---------p~~d~~~i~~el~~~~~~~i~~-----~~~~ 201 (424)
+.......++.+|++++|+|..+...+..+..+.. ....++++ ++.++.|..++ ....
T Consensus 67 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~ 138 (170)
T cd04116 67 -----FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV---VLGNKNDIPERQVSTEEAQA 138 (170)
T ss_pred -----HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEE---EEEECccccccccCHHHHHH
Confidence 22233445788999999999887654322211110 11223333 45566664322 1111
Q ss_pred HHhhccC---CCcchhhHHHHHHHHHHHHHH
Q 014450 202 LKKGKAK---DSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 202 i~k~~~~---~~~Sak~~~~~~~ll~~i~~~ 229 (424)
+.+.... ..+||+++.++.++++.+.+.
T Consensus 139 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 139 WCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 1111111 125899999999988877653
No 121
>PRK12739 elongation factor G; Reviewed
Probab=99.27 E-value=5e-12 Score=137.90 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=62.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC-----ccccC------------CCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK-----AQAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~-----~~~s~------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+|+|++|+|||||+|+|+.... ..+.+ ..++|++.....+.+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--------------- 72 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--------------- 72 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC---------------
Confidence 46899999999999999999973211 11221 34566666555555544
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.|+||||+.+ +...+...++.+|++++|+|+.+.
T Consensus 73 --~~i~liDTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~g 109 (691)
T PRK12739 73 --HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVSG 109 (691)
T ss_pred --EEEEEEcCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCCC
Confidence 7899999999843 444678889999999999999653
No 122
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.27 E-value=6.6e-12 Score=110.64 Aligned_cols=148 Identities=14% Similarity=0.118 Sum_probs=82.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|+|||||+|+|++.... ....+.++.+.....+...+. ...+.+|||||.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~- 63 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGK---------------RIDLAIWDTAGQERYH- 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCE---------------EEEEEEEECCchHHHH-
Confidence 48999999999999999999954432 222233322222333333221 2468999999963221
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
......++.+|++++|+|+++...+.........+ .+++++ ++.++.|.... ....+.+.
T Consensus 64 ------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---iv~nK~D~~~~~~~~~~~~~~~~~~ 134 (162)
T cd04123 64 ------ALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLV---IVGNKIDLERQRVVSKSEAEEYAKS 134 (162)
T ss_pred ------HhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECcccccccCCCHHHHHHHHHH
Confidence 12223457899999999998765432111110000 022333 34555554322 11111111
Q ss_pred ccC--CCcchhhHHHHHHHHHHHHHHH
Q 014450 206 KAK--DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 206 ~~~--~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ..+|++++.++.++++.+...+
T Consensus 135 ~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 135 VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 111 1268899999999888876543
No 123
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.26 E-value=7.1e-12 Score=116.98 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=59.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccC------------------------------CCCccccceEEEeecCCCcch
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDPRLH 107 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~------------------------------~p~tT~~~~~~~~~~~~~~~d 107 (424)
+|+|+|+||+|||||+|+|++...+..++ ..++|+++....+...+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 58999999999999999998655443321 14555555555444433
Q ss_pred hhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++.|+||||+. .+.......++.+|++++|+|++.
T Consensus 77 -------------~~~~liDTpG~~-------~~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 77 -------------RKFIIADTPGHE-------QYTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred -------------ceEEEEECCcHH-------HHHHHHHHhhhhCCEEEEEEECCC
Confidence 679999999973 233355667899999999999853
No 124
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.26 E-value=8.4e-12 Score=112.39 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=89.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCcccc-ceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE-PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~-~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..+|+++|.+|||||||+++++++. ..+.++..|+.. .....+.+++.. ..+.++||+|....
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~---------------~~l~~~d~~g~~~~ 67 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQE---------------KYLILREVGEDEVA 67 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeE---------------EEEEEEecCCcccc
Confidence 5799999999999999999999544 332344333322 222334444321 46889999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecc---ccccCCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG---KVDPKSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~---~~dp~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
.. .....+++||++++|+|++++.++..+.. ......+++++ ++.++.|..+.+ ...+.+.
T Consensus 68 ~~-------~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~i---iv~NK~Dl~~~~~~~~~~~~~~~~~ 137 (169)
T cd01892 68 IL-------LNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCL---FVAAKADLDEQQQRYEVQPDEFCRK 137 (169)
T ss_pred cc-------cchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEE---EEEEcccccccccccccCHHHHHHH
Confidence 21 23344689999999999987654322111 11111234444 556776654321 1222222
Q ss_pred ccC---CCcchhhHHHHHHHHHHHHHHH
Q 014450 206 KAK---DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 206 ~~~---~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ..+||+++.++.++++.+.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 138 LGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred cCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 211 2379999999999999888765
No 125
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.26 E-value=1.3e-11 Score=112.68 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=85.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||+++++++... ...|..+.+...-.+...+ .....+.+|||||..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~--------------~~~~~l~l~Dt~G~~--- 63 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGN--------------SKGITFHFWDVGGQE--- 63 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccC--------------CCceEEEEEECCCcH---
Confidence 479999999999999999999954432 2344333222222222211 012569999999972
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecc------ccccCCchhhhhhhhhcccHHHHHH----HHHHHH--
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG------KVDPKSDVDVINLELVFSDLDQIEK----RMEKLK-- 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~------~~dp~~d~~~i~~el~~~~~~~i~~----~~~~i~-- 203 (424)
.+...+...++.||++++|+|+++...+..... ........+++ ++.++.|..+. .+....
T Consensus 64 ----~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~i---iv~NK~D~~~~~~~~~~~~~~~~ 136 (183)
T cd04152 64 ----KLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVL---VLANKQDLPNALSVSEVEKLLAL 136 (183)
T ss_pred ----hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEE---EEEECcCccccCCHHHHHHHhCc
Confidence 222234455789999999999987543211100 00011223333 44555554321 111111
Q ss_pred -hhcc-----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 -KGKA-----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 -k~~~-----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.... ...+||+++.|+.++++.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 137 HELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred cccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 1111 113699999999999999887773
No 126
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.26 E-value=3.7e-12 Score=114.33 Aligned_cols=150 Identities=11% Similarity=0.057 Sum_probs=84.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.||+++|.+|||||||+|+++.+. .... ...|.........+.. ......+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~--~~~t~~~~~~~~~~~~-------------~~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKK--YVATLGVEVHPLDFHT-------------NRGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCC--CCCceeeEEEEEEEEE-------------CCEEEEEEEEECCCChhhcc
Confidence 489999999999999999998333 2111 1123222222221110 00125689999999743322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC----CchhhhhhhhhcccHHHHHHHH--H--HHHhhc--
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK----SDVDVINLELVFSDLDQIEKRM--E--KLKKGK-- 206 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~----~d~~~i~~el~~~~~~~i~~~~--~--~i~k~~-- 206 (424)
.....++.+|++++|+|+++..++..+......+ .+++++ ++.++.|..++.. . ...+..
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii---iv~nK~Dl~~~~~~~~~~~~~~~~~~ 134 (166)
T cd00877 65 -------LRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIV---LCGNKVDIKDRKVKAKQITFHRKKNL 134 (166)
T ss_pred -------ccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEE---EEEEchhcccccCCHHHHHHHHHcCC
Confidence 1123457899999999998765543222111100 133333 4456665442211 0 111111
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 207 AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 207 ~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
....+||+++.+++++++.+.+.+.+
T Consensus 135 ~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 135 QYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 11237999999999999999887754
No 127
>PTZ00369 Ras-like protein; Provisional
Probab=99.26 E-value=5.9e-12 Score=115.41 Aligned_cols=150 Identities=17% Similarity=0.120 Sum_probs=86.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||++++.++... ..+..|+.+.....+.+++. ...+.+|||||..+..
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEE---------------TCLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCE---------------EEEEEEEeCCCCccch
Confidence 479999999999999999999944321 12222222222333344432 1468899999974332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHHH------HHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEKR------MEKLK 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~~------~~~i~ 203 (424)
......++.+|++++|+|+++...+..+..... +...++++ ++.++.|..+.+ .....
T Consensus 68 -------~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~pii---iv~nK~Dl~~~~~i~~~~~~~~~ 137 (189)
T PTZ00369 68 -------AMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI---LVGNKCDLDSERQVSTGEGQELA 137 (189)
T ss_pred -------hhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECcccccccccCHHHHHHHH
Confidence 233445788999999999987754322211111 11122333 334555432210 11111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+... ...+||+++.++.++++.+.+.+..
T Consensus 138 ~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 138 KSFGIPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred HHhCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 1236999999999999988877743
No 128
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.25 E-value=5.4e-12 Score=116.61 Aligned_cols=154 Identities=13% Similarity=0.103 Sum_probs=90.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||+++|.+|||||||++++++.... ..++.|+.+.....+.+.+. ...+.||||||......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGV---------------SLTLDILDTSGSYSFPA- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCE---------------EEEEEEEECCCchhhhH-
Confidence 6899999999999999999954322 33444444444444444431 14688999999743221
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH-H-------HHHHH
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK-R-------MEKLK 203 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~-~-------~~~i~ 203 (424)
.....++.||++++|+|+++...+..+..... ....++++ ++.++.|.... + .....
T Consensus 63 ------~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~NK~Dl~~~~~~v~~~~~~~~~~ 133 (198)
T cd04147 63 ------MRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIV---VVGNKADSLEEERQVPAKDALSTVE 133 (198)
T ss_pred ------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE---EEEEccccccccccccHHHHHHHHH
Confidence 22235688999999999987644221111000 00122333 44555554321 0 01111
Q ss_pred hhc--cCCCcchhhHHHHHHHHHHHHHHHhCCCCccC
Q 014450 204 KGK--AKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238 (424)
Q Consensus 204 k~~--~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~ 238 (424)
... ....+||+++.++.++++.+.+.+....+..|
T Consensus 134 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 134 LDWNCGFVETSAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred hhcCCcEEEecCCCCCCHHHHHHHHHHHhhcccccch
Confidence 010 11137999999999999999998876655554
No 129
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.25 E-value=4.8e-12 Score=109.73 Aligned_cols=89 Identities=25% Similarity=0.234 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||+|||||+|+|++.. ...+..+++|.+.....+..++.. ..+.+|||||......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCcccchH
Confidence 689999999999999999999555 777888888888777766655411 4588999999644322
Q ss_pred cccchhhhhhhhhhccceEEEEeec
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda 161 (424)
............+..+|++++|+++
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~ 90 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDV 90 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhh
Confidence 1111122223334445555555444
No 130
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.25 E-value=1e-11 Score=110.32 Aligned_cols=150 Identities=19% Similarity=0.211 Sum_probs=82.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCcc-ccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
++|+++|.+|||||||+++|.++......++..|+ .+...-.+.+++. ...++.+|||||...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~~~-- 64 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTD--------------NTVELFIFDSAGQEL-- 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCC--------------CEEEEEEEECCCHHH--
Confidence 48999999999999999999843322233333332 2222222333211 026799999999622
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC----CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK----SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~----~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
........++++|++++|+|.++...+..+..+...+ ...+.+ ++.++.|.... ....+...
T Consensus 65 -----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~~~ 136 (164)
T cd04101 65 -----YSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGV---LVGNKMDLADKAEVTDAQAQAFAQA 136 (164)
T ss_pred -----HHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE---EEEECcccccccCCCHHHHHHHHHH
Confidence 1122345578999999999998764322111110000 112222 33455443222 11111111
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.. ...+||+++.++.++++.+.+.+
T Consensus 137 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 137 NQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred cCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 11 12369999999999998887654
No 131
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.25 E-value=3.2e-12 Score=113.29 Aligned_cols=80 Identities=24% Similarity=0.300 Sum_probs=55.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|+|||||+|+|+.+... ... .|...+...+...+ .++.+|||||...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~---- 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTI--PTIGFNVETVTYKN-----------------LKFQVWDLGGQTS---- 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcC--CccCcCeEEEEECC-----------------EEEEEEECCCCHH----
Confidence 5899999999999999999844432 112 23333333333322 6799999999732
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
+...+...++.||++++|+|+++..
T Consensus 56 ---~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 56 ---IRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred ---HHHHHHHHhcCCCEEEEEEECCCHH
Confidence 2234456678999999999997753
No 132
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.25 E-value=6.9e-12 Score=110.28 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=85.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|+|++.. ..+.++.++.+.....+..++. ...+.++|+||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~---- 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGE---------------TYTLDILDTAGQEE---- 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCE---------------EEEEEEEECCChHH----
Confidence 58999999999999999999544 4555566666655555554431 15689999999733
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHH------HHHHHHhh
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEK------RMEKLKKG 205 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~------~~~~i~k~ 205 (424)
+.......++.+|++++|+|.++...+.........+ ...+++ ++.++.|.... ......+.
T Consensus 60 ---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i---vv~nK~D~~~~~~~~~~~~~~~~~~ 133 (160)
T cd00876 60 ---FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIV---LVGNKCDLENERQVSKEEGKALAKE 133 (160)
T ss_pred ---HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE---EEEECCcccccceecHHHHHHHHHH
Confidence 2223345578899999999987654321111000000 112222 33444443321 11111111
Q ss_pred c--cCCCcchhhHHHHHHHHHHHHHH
Q 014450 206 K--AKDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 206 ~--~~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
. +...+|++++.++.++++.+.+.
T Consensus 134 ~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 134 WGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred cCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 1 11236888888998888887653
No 133
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.25 E-value=3.6e-12 Score=115.25 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=59.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|+|||||+++|+++..... ..|...+...+...+ ..+.++||||..
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~--- 70 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKN-----------------IRFLMWDIGGQE--- 70 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECC-----------------eEEEEEECCCCH---
Confidence 47999999999999999999985543322 233334444444433 679999999973
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
.+...+...++.||++++|+|+++...
T Consensus 71 ----~~~~~~~~~~~~~d~vi~V~D~s~~~~ 97 (174)
T cd04153 71 ----SLRSSWNTYYTNTDAVILVIDSTDRER 97 (174)
T ss_pred ----HHHHHHHHHhhcCCEEEEEEECCCHHH
Confidence 233345566889999999999987643
No 134
>PRK00007 elongation factor G; Reviewed
Probab=99.25 E-value=9.5e-12 Score=135.70 Aligned_cols=225 Identities=15% Similarity=0.154 Sum_probs=120.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC-----cccc------------CCCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~-----~~~s------------~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+|+|++|+|||||+|+|+.... ..++ ...++|++.....+.+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--------------- 74 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--------------- 74 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC---------------
Confidence 46999999999999999999972111 1122 134566666555555544
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHH
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIE 196 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~ 196 (424)
.++.|+||||..+ +.......++.+|++++|+|+........ +...... ..++.+ +..|++|..
T Consensus 75 --~~~~liDTPG~~~-------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~-~~~p~i---v~vNK~D~~- 140 (693)
T PRK00007 75 --HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK-YKVPRI---AFVNKMDRT- 140 (693)
T ss_pred --eEEEEEeCCCcHH-------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH-cCCCEE---EEEECCCCC-
Confidence 7899999999753 33467788899999999999864321000 0000000 000000 112222211
Q ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEec-----cccccc
Q 014450 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA-----NVAESD 270 (424)
Q Consensus 197 ~~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~-----nv~~~~ 270 (424)
.......++.+.+.++.........++... -++ -+.+...+...|.. +....+
T Consensus 141 -------------------~~~~~~~~~~i~~~l~~~~~~~~ipisa~~--~f~g~~d~~~~~~~~~~~~~~~~~~~~~~ 199 (693)
T PRK00007 141 -------------------GADFYRVVEQIKDRLGANPVPIQLPIGAED--DFKGVVDLVKMKAIIWNEADLGATFEYEE 199 (693)
T ss_pred -------------------CCCHHHHHHHHHHHhCCCeeeEEecCccCC--cceEEEEcceeeeeecccCCCCCcceEcc
Confidence 122445566666666432111100111110 011 00111222222210 001111
Q ss_pred cCCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 271 LADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 271 ~~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
++ ......+.++ ..++-+.+++.+++.++.||++..++...+...++.+.....++|||-
T Consensus 200 ~~----~~~~~~~~~~-----------~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l~~~~~~~~~~Pv~~ 259 (693)
T PRK00007 200 IP----ADLKDKAEEY-----------REKLIEAAAEADEELMEKYLEGEELTEEEIKAALRKATIANEIVPVLC 259 (693)
T ss_pred CC----HHHHHHHHHH-----------HHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHHHHHHhcCcEEEEEe
Confidence 11 1122222222 234556678889999999999888888888888888888889999984
No 135
>PLN03110 Rab GTPase; Provisional
Probab=99.25 E-value=1.2e-11 Score=116.17 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=93.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+++|++. .......|..+.+.....+.+++.. ..+.||||||..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~-~~~~~~~~t~g~~~~~~~v~~~~~~---------------~~l~l~Dt~G~~-- 72 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN-EFCLESKSTIGVEFATRTLQVEGKT---------------VKAQIWDTAGQE-- 72 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeEEEEEEEEEECCEE---------------EEEEEEECCCcH--
Confidence 4579999999999999999999944 3333334444444444555554422 578999999963
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
.+.......++.+|++++|+|.++...+..+..+...+ .+++++ ++.++.|.... ....+.
T Consensus 73 -----~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---iv~nK~Dl~~~~~~~~~~~~~l~ 144 (216)
T PLN03110 73 -----RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIM---MAGNKSDLNHLRSVAEEDGQALA 144 (216)
T ss_pred -----HHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEE---EEEEChhcccccCCCHHHHHHHH
Confidence 23334455678999999999998765432222111100 123333 44566664221 111122
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.... ...+||+++.+++++++.+.+.+.+
T Consensus 145 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 145 EKEGLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2111 1236999999999999988877743
No 136
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.24 E-value=3.4e-10 Score=101.03 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=51.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||+|+++++. ......| |+-......+.... ....+.++||||.....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~~---------------~~~~l~i~Dt~G~~~~~- 63 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIP-TIEDTYRQVISCSK---------------NICTLQITDTTGSHQFP- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCC-cchheEEEEEEECC---------------EEEEEEEEECCCCCcch-
Confidence 689999999999999999999543 2221112 11111111122221 12568999999984322
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......++.+|++++|+|.+
T Consensus 64 ------~~~~~~~~~~~~~ilv~d~~ 83 (165)
T cd04140 64 ------AMQRLSISKGHAFILVYSVT 83 (165)
T ss_pred ------HHHHHHhhcCCEEEEEEECC
Confidence 12234567899999999974
No 137
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.24 E-value=1.2e-11 Score=112.09 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=49.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
....+|+++|.||+|||||+|+|+|...+.+++.|++|+....... + .++.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~------------------~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D------------------KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C------------------CCEEEEECcCC
Confidence 4458999999999999999999998888999999999987655443 1 35899999996
No 138
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.24 E-value=7.9e-12 Score=114.56 Aligned_cols=148 Identities=12% Similarity=0.115 Sum_probs=83.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccc-eEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP-NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~-~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
+||+++|.||||||||+|+++ ......+++..|+... ....+.+++.. ..+.+|||||.....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~ 64 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV-HHRFLVGPYQNTIGAAFVAKRMVVGERV---------------VTLGIWDTAGSERYE 64 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH-hCCcCCcCcccceeeEEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 489999999999999999999 4444433343332221 12234444422 457899999973321
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc---c-CCchhhhhhhhhcccHHHHHH----------HHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD---P-KSDVDVINLELVFSDLDQIEK----------RMEK 201 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d---p-~~d~~~i~~el~~~~~~~i~~----------~~~~ 201 (424)
. .....++.+|++++|+|+++...+..+..+.. . ..+.+++ ++.++.|..+. ....
T Consensus 65 ~-------~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~pii---lv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (193)
T cd04118 65 A-------MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIY---LCGTKSDLIEQDRSLRQVDFHDVQD 134 (193)
T ss_pred h-------hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEE---EEEEcccccccccccCccCHHHHHH
Confidence 1 22334678999999999977644311110000 0 0112222 44555553321 0111
Q ss_pred HHhhcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 202 LKKGKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 202 i~k~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+..... ...+||+++.++.++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 135 FADEIKAQHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111111 11368999999999999888766
No 139
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.24 E-value=7.5e-12 Score=110.58 Aligned_cols=140 Identities=21% Similarity=0.187 Sum_probs=80.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||+++|.+|||||||+|++++..... ...|.......+.+.+ ..+.+|||||....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~--- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT----TIPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI--- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC----CCCCcCcceEEEEECC-----------------EEEEEEECCCChhh---
Confidence 68999999999999999999665221 1223333333333332 67999999997432
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccc------cccCCchhhhhhhhhcccHHHHHHH-----HHHHHhh-
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK------VDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKG- 205 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~------~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~- 205 (424)
...+...++.+|++++|+|+++...+...... .....+.+++ ++.++.|..... ...+...
T Consensus 57 ----~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pii---iv~nK~D~~~~~~~~~~~~~~~~~~ 129 (158)
T cd00878 57 ----RPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLL---IFANKQDLPGALSVSELIEKLGLEK 129 (158)
T ss_pred ----HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEE---EEeeccCCccccCHHHHHHhhChhh
Confidence 22344567889999999999876432111000 0001122333 334555543211 1111110
Q ss_pred -----ccCCCcchhhHHHHHHHHHHHHH
Q 014450 206 -----KAKDSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 206 -----~~~~~~Sak~~~~~~~ll~~i~~ 228 (424)
.+...+||+++.+++++++.+.+
T Consensus 130 ~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 130 ILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 01112689999999988887753
No 140
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.24 E-value=1.3e-11 Score=111.02 Aligned_cols=141 Identities=15% Similarity=0.208 Sum_probs=81.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+++|+.+... ...|.++. ....+... ...+.+|||||..+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~--~~~~~~~~-----------------~~~~~l~Dt~G~~~-- 65 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGF--NVETVTYK-----------------NVKFNVWDVGGQDK-- 65 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCccc--ceEEEEEC-----------------CEEEEEEECCCCHH--
Confidence 479999999999999999999844322 22232222 22222222 26799999999732
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc-----c-cCCchhhhhhhhhcccHHHHHH-HHHHHHh----
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV-----D-PKSDVDVINLELVFSDLDQIEK-RMEKLKK---- 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~-----d-p~~d~~~i~~el~~~~~~~i~~-~~~~i~k---- 204 (424)
+.......+++||++++|+|+++...+..+.... + ...+.+++ ++.++.|..+. ....+..
T Consensus 66 -----~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~~~~ 137 (168)
T cd04149 66 -----IRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLL---VFANKQDLPDAMKPHEIQEKLGL 137 (168)
T ss_pred -----HHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEE---EEEECcCCccCCCHHHHHHHcCC
Confidence 2223345678999999999998765432211100 0 01223333 45666654321 0111111
Q ss_pred --hcc----CCCcchhhHHHHHHHHHHHH
Q 014450 205 --GKA----KDSQSKLKEDAEKAALEKIQ 227 (424)
Q Consensus 205 --~~~----~~~~Sak~~~~~~~ll~~i~ 227 (424)
... ...+||+++.|+.++++.|.
T Consensus 138 ~~~~~~~~~~~~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 138 TRIRDRNWYVQPSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence 111 11369999999999888764
No 141
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.23 E-value=8.5e-12 Score=113.98 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=61.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||+|+|++.... ....|..+..+.+.+++ ..+.++||||...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~----~~~~T~~~~~~~i~~~~-----------------~~~~l~D~~G~~~-- 75 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA----QHVPTLHPTSEELTIGN-----------------IKFKTFDLGGHEQ-- 75 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc----ccCCccCcceEEEEECC-----------------EEEEEEECCCCHH--
Confidence 589999999999999999999955432 13346666667766654 5689999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
....+...++.+|++++|+|+++..
T Consensus 76 -----~~~~~~~~~~~ad~iilV~D~~~~~ 100 (190)
T cd00879 76 -----ARRLWKDYFPEVDGIVFLVDAADPE 100 (190)
T ss_pred -----HHHHHHHHhccCCEEEEEEECCcHH
Confidence 2223456678999999999998653
No 142
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.23 E-value=2e-11 Score=110.92 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=62.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++|+|+|.+|+|||||+|+|++.. .+.+++.+++|.++..... + .++.+|||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 446899999999999999999999664 5677888888877654332 1 248999999985
Q ss_pred CCCCcc---c---chhhhhhhhhhccceEEEEeecC
Q 014450 133 KGASQG---E---GLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 133 ~~~~~~---~---~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
...... + .+...++.....+|++++|+|++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~ 111 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIR 111 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCC
Confidence 432211 1 11223344444578999999984
No 143
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.23 E-value=8.3e-12 Score=113.94 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=83.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|.++|.+|||||||+++++.+... ...| |...+...+...+ ..+.+|||||..
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~p--t~g~~~~~~~~~~-----------------~~~~i~D~~Gq~--- 72 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQD--- 72 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccC--CcceeEEEEEECC-----------------EEEEEEECCCCH---
Confidence 479999999999999999999843322 2222 2222222333322 679999999962
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH-HHHHHHhhc--
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK-RMEKLKKGK-- 206 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~-- 206 (424)
.+...+...+++||++++|+|+++...+..+.... ....+.+++ ++.|+.|.... ....+.+..
T Consensus 73 ----~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~l~l 145 (181)
T PLN00223 73 ----KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL---VFANKQDLPNAMNAAEITDKLGL 145 (181)
T ss_pred ----HHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEE---EEEECCCCCCCCCHHHHHHHhCc
Confidence 23334455679999999999998765432111000 001122222 33455442211 001111110
Q ss_pred ----c----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 207 ----A----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 207 ----~----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. ....||++|.|+.++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 146 HSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred cccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 0 012589999999999998877663
No 144
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.23 E-value=8.6e-12 Score=111.88 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=55.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||+|+|++....... .|...+...+...+ ..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~----~t~g~~~~~i~~~~-----------------~~~~~~D~~G~~--- 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHIT----PTQGFNIKTVQSDG-----------------FKLNVWDIGGQR--- 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccC----CCCCcceEEEEECC-----------------EEEEEEECCCCH---
Confidence 689999999999999999999965332211 12222222333333 568999999963
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+...+...++.+|++++|+|+++.
T Consensus 70 ----~~~~~~~~~~~~~~~ii~v~D~~~~ 94 (173)
T cd04155 70 ----AIRPYWRNYFENTDCLIYVIDSADK 94 (173)
T ss_pred ----HHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 2223445567899999999999764
No 145
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.23 E-value=9.3e-12 Score=111.01 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=84.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||++.++++. ......|..+.+.....+.+.+. ...+.+|||||....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~-- 62 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGI---------------KVRIQIWDTAGQERY-- 62 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHhH--
Confidence 479999999999999999999443 33222333222233333444432 156899999996322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
.......++.+|++++|+|.++..++..+..+... ..+++++ ++.++.|..+.+ ...+.+.
T Consensus 63 -----~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~ii---lvgnK~Dl~~~~~v~~~~~~~~~~~ 134 (161)
T cd04117 63 -----QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKI---LIGNKADEEQKRQVGDEQGNKLAKE 134 (161)
T ss_pred -----HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECcccccccCCCHHHHHHHHHH
Confidence 22334557899999999999877654332211110 0122233 345555543221 1111221
Q ss_pred cc--CCCcchhhHHHHHHHHHHHHHH
Q 014450 206 KA--KDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 206 ~~--~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
.. .-..||+++.++.++++.+.+.
T Consensus 135 ~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 11 1126899999999988887653
No 146
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.23 E-value=1e-11 Score=110.71 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=85.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.||||||||++++.++. . ...++.++.......+.+.+. ..++.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR-F-IGEYDPNLESLYSRQVTIDGE---------------QVSLEILDTAGQQQADT- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc-c-ccccCCChHHhceEEEEECCE---------------EEEEEEEECCCCccccc-
Confidence 58999999999999999998432 2 234444443322333333321 25688999999853211
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-------CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-------KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-------~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
......++.+|++++|+|+++..++..+...... ..+.+++ ++.++.|..+.+ ...+.+
T Consensus 63 -----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~~~~~ 134 (165)
T cd04146 63 -----EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVI---LVGNKADLLHYRQVSTEEGEKLAS 134 (165)
T ss_pred -----chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECCchHHhCccCHHHHHHHHH
Confidence 1334567889999999999877543222111110 1123333 456666643321 111221
Q ss_pred hccC--CCcchhhH-HHHHHHHHHHHHHH
Q 014450 205 GKAK--DSQSKLKE-DAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~--~~~Sak~~-~~~~~ll~~i~~~L 230 (424)
.... ...||+++ .++.++++.+.+.+
T Consensus 135 ~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 135 ELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred HcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 1111 12688888 58999988887654
No 147
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.23 E-value=1.2e-11 Score=109.40 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=86.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|+|++... +..+..++.+........++. ...+.+|||||.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~- 62 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------DVQLNILDTAGQEDYA- 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCE---------------EEEEEEEECCChhhhh-
Confidence 4899999999999999999994432 234444444433333333321 1568999999974322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccc------cccCCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK------VDPKSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~------~dp~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
......++.+|++++|+|..++..+...... .....+++++ ++.++.|.... ....+.+
T Consensus 63 ------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---iv~NK~D~~~~~~~~~~~~~~~~~ 133 (164)
T cd04139 63 ------AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLL---LVGNKCDLEDKRQVSSEEAANLAR 133 (164)
T ss_pred ------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEEccccccccccCHHHHHHHHH
Confidence 2333456889999999998765432111100 0001223333 44566665431 1111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. +...+||+++.++.++++.+.+.+.
T Consensus 134 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 134 QWGVPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 11 1113699999999999999887763
No 148
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.23 E-value=1.8e-11 Score=113.93 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=90.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|.++|.+|||||||++++. .........|..+.+.....+.+++.. ..+.+|||||..+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~-~~~f~~~~~~Ti~~~~~~~~i~~~~~~---------------v~l~iwDtaGqe~--- 61 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFT-DDTFCEACKSGVGVDFKIKTVELRGKK---------------IRLQIWDTAGQER--- 61 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHH-hCCCCCcCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCchh---
Confidence 479999999999999999999 443322222333334444445554422 6689999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
+.......+++||++++|+|+++..++..+..+.+. ..+++++ ++.++.|..+.+ ...+.+.
T Consensus 62 ----~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~pii---lVgNK~DL~~~~~v~~~~~~~~a~~ 134 (202)
T cd04120 62 ----FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL---LVGNKLDCETDREISRQQGEKFAQQ 134 (202)
T ss_pred ----hHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEECcccccccccCHHHHHHHHHh
Confidence 222345568899999999999887654332211111 1223333 455666543211 1111111
Q ss_pred c-c--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 K-A--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ~-~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. . ....||+++.++.++++.+.+.+.
T Consensus 135 ~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 135 ITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1 1 113799999999999999887664
No 149
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.22 E-value=3.1e-11 Score=115.74 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=67.6
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.....++|+++|.+|||||||+|+|+|...+.+++++.+|...........+ ..+.+|||||+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCc
Confidence 4556799999999999999999999988888888888888877766555444 56999999999
Q ss_pred CCCCCc---ccchhhhhhhhhh--ccceEEEEeec
Q 014450 132 VKGASQ---GEGLGNKFLSHIR--EVDSILQVVRC 161 (424)
Q Consensus 132 ~~~~~~---~~~~~~~~l~~i~--~aD~il~Vvda 161 (424)
.+.... .....+.....+. ..|++++|.+.
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rl 124 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 765321 1111122222332 57889888765
No 150
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.22 E-value=1.5e-11 Score=115.08 Aligned_cols=151 Identities=22% Similarity=0.218 Sum_probs=86.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+++++..... ..|..+.+.....+.+.+. ....+.+|||||...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~--------------~~~~l~i~Dt~G~~~-- 64 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPG--------------VRIKLQLWDTAGQER-- 64 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCC--------------CEEEEEEEeCCcchh--
Confidence 37999999999999999999995443222 2233333333333333211 025689999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
+.......++++|++++|+|.++..++..+..+... .....++ ++.++.|..+. ....+.
T Consensus 65 -----~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~ii---lvgNK~Dl~~~~~v~~~~~~~~~ 136 (211)
T cd04111 65 -----FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFI---LVGHKCDLESQRQVTREEAEKLA 136 (211)
T ss_pred -----HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEE---EEEEccccccccccCHHHHHHHH
Confidence 222334567899999999999876543222111110 0111111 23455543321 111222
Q ss_pred hhccC--CCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKAK--DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~~--~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.... ...||+++.++.++++.+.+.+.
T Consensus 137 ~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 137 KDLGMKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred HHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22111 12699999999999998887664
No 151
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.22 E-value=1.7e-11 Score=112.08 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=85.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+++++. ......|..+.+.....+.+++. ...+.+|||||...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~g~~~--- 61 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDE-FSESTKSTIGVDFKIKTVYIENK---------------IIKLQIWDTNGQER--- 61 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCCcHH---
Confidence 489999999999999999999443 32222233333333333344331 25689999999632
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHhh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKKG 205 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k~ 205 (424)
+.......++.+|++++|+|+++...+..+..+..- ..+.+.+ ++.++.|..+.+ ...+.+.
T Consensus 62 ----~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~i---vv~nK~Dl~~~~~v~~~~~~~~~~~ 134 (188)
T cd04125 62 ----FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKV---IVANKSDLVNNKVVDSNIAKSFCDS 134 (188)
T ss_pred ----HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECCCCcccccCCHHHHHHHHHH
Confidence 222445667899999999999876543222111000 0112222 345555543211 1111111
Q ss_pred c--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 K--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. +...+||+++.++.++++.+.+.+.
T Consensus 135 ~~~~~~evSa~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 135 LNIPFFETSAKQSINVEEAFILLVKLII 162 (188)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1 1123699999999998888877664
No 152
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.22 E-value=7.6e-12 Score=112.11 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=84.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+++++. .. ..+..|+.+.....+.+++. ...+.+|||||......
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV-FI-ESYDPTIEDSYRKQVEIDGR---------------QCDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CC-cccCCcchheEEEEEEECCE---------------EEEEEEEeCCCcccchh
Confidence 689999999999999999999444 22 22333333332233333321 14688999999754322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHHHH------HHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEKRM------EKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~~~------~~i~k 204 (424)
.....++.+|++++|+|.++...+..+..... ...+.+++ ++.++.|..+.+. ..+.+
T Consensus 65 -------~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~pii---iv~nK~D~~~~~~~~~~~~~~~~~ 134 (168)
T cd04177 65 -------MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMV---LVGNKADLEDDRQVSREDGVSLSQ 134 (168)
T ss_pred -------hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEE---EEEEChhccccCccCHHHHHHHHH
Confidence 22334678999999999887654322111100 11123333 3456665433211 11111
Q ss_pred hcc---CCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKA---KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~---~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ....||+++.++.++++.+...+
T Consensus 135 ~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 135 QWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred HcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 111 11369999999999988887654
No 153
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.22 E-value=1.2e-11 Score=112.85 Aligned_cols=145 Identities=18% Similarity=0.213 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||++++..+... ...| |...+...+...+ ..+.+|||||..
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~--T~~~~~~~~~~~~-----------------~~~~l~D~~G~~--- 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKN-----------------LKFTMWDVGGQD--- 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--ccccceEEEEECC-----------------EEEEEEECCCCH---
Confidence 479999999999999999999733322 1122 3233333343332 679999999973
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH----HH-HHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK----RM-EKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~----~~-~~i~k 204 (424)
.+.......++.||++++|+|+++...+....... ....+.+++ ++.|+.|..+. .+ ..+..
T Consensus 73 ----~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~l~~ 145 (182)
T PTZ00133 73 ----KLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLL---VFANKQDLPNAMSTTEVTEKLGL 145 (182)
T ss_pred ----hHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEE---EEEeCCCCCCCCCHHHHHHHhCC
Confidence 22234455689999999999998754322111000 001122233 34455543211 01 11110
Q ss_pred h-ccC-----CCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 G-KAK-----DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~-~~~-----~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. .+. ..+||+++.|+.++++.+.+.+.
T Consensus 146 ~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 146 HSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred CcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 0 000 12589999999999998887663
No 154
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.21 E-value=1.4e-11 Score=111.60 Aligned_cols=144 Identities=18% Similarity=0.229 Sum_probs=82.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||++++..+.. ....| |.......+... ...+.+|||||...
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~--t~~~~~~~~~~~-----------------~~~l~l~D~~G~~~-- 69 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIP--TIGFNVETVTYK-----------------NISFTVWDVGGQDK-- 69 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCC--ccccceEEEEEC-----------------CEEEEEEECCCChh--
Confidence 48999999999999999999973332 12223 222222222222 26799999999732
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH-HHHHHHhhc--
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK-RMEKLKKGK-- 206 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~-- 206 (424)
+.......+++||++++|+|++++..+....... ....+.+++ ++.++.|..+. ....+....
T Consensus 70 -----~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~~~~ 141 (175)
T smart00177 70 -----IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVIL---VFANKQDLPDAMKAAEITEKLGL 141 (175)
T ss_pred -----hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEE---EEEeCcCcccCCCHHHHHHHhCc
Confidence 2223445579999999999998764321111000 001122233 44555553221 001111100
Q ss_pred -----c---CCCcchhhHHHHHHHHHHHHHHH
Q 014450 207 -----A---KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 207 -----~---~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+ ...+||++|.++.++++.|.+.+
T Consensus 142 ~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 142 HSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred cccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 0 01269999999999999887665
No 155
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.21 E-value=2.8e-11 Score=110.60 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=87.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|||||||+++++++ .......|....+.....+..++. ...+.+|||+|...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~-~f~~~~~~T~g~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~--- 61 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG-EFDEDYIQTLGVNFMEKTISIRGT---------------EITFSIWDLGGQRE--- 61 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCchh---
Confidence 48999999999999999999844 332222232222222234444442 25689999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHH-----H------HHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIE-----K------RME 200 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~-----~------~~~ 200 (424)
+.......+++||++++|+|+++..++..+..+...+ ...+ + ++.++.|... . ...
T Consensus 62 ----~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-i---lVgnK~Dl~~~~~~~~~~~~~~~~~ 133 (182)
T cd04128 62 ----FINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-I---LVGTKYDLFADLPPEEQEEITKQAR 133 (182)
T ss_pred ----HHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-E---EEEEchhccccccchhhhhhHHHHH
Confidence 2223334678999999999998876532221111100 1111 1 4456666431 1 111
Q ss_pred HHHhhccC--CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 KLKKGKAK--DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ~i~k~~~~--~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.+.... ..+||+++.+++++++.+.+.+.+
T Consensus 134 ~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 134 KYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 12221111 126999999999999999887754
No 156
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.21 E-value=1.4e-11 Score=109.83 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=56.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|||||||++++..+... +..| |...+...+...+ .++.+|||||..+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~~-----------------~~~~l~D~~G~~~--- 56 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 56 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEECC-----------------EEEEEEECCCCHh---
Confidence 48999999999999999999734322 2223 2222223333322 6799999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
+...+...+++||++++|+|+++...
T Consensus 57 ----~~~~~~~~~~~ad~~i~v~D~~~~~s 82 (159)
T cd04150 57 ----IRPLWRHYFQNTQGLIFVVDSNDRER 82 (159)
T ss_pred ----HHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence 22344556899999999999987543
No 157
>PLN03108 Rab family protein; Provisional
Probab=99.21 E-value=1.3e-11 Score=115.32 Aligned_cols=149 Identities=17% Similarity=0.173 Sum_probs=87.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+|+|.+|||||||+|+|++.. ......|..+.+...+.+.+++.. ..+.+|||||...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~-- 67 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQES-- 67 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHH--
Confidence 4799999999999999999999443 333333444444444455554421 4588999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
+.......++.+|++++|+|+++...+.++..+... ...++++ ++.++.|..+++ ...+.+
T Consensus 68 -----~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~pii---iv~nK~Dl~~~~~~~~~~~~~~~~ 139 (210)
T PLN03108 68 -----FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIM---LIGNKCDLAHRRAVSTEEGEQFAK 139 (210)
T ss_pred -----HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEE---EEEECccCccccCCCHHHHHHHHH
Confidence 223445667889999999999876543322111100 0122222 345555433221 111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
... ...+||+++.++.++++.+.+.+
T Consensus 140 ~~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 140 EHGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 111 12268999999999887776555
No 158
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.20 E-value=3.6e-11 Score=108.02 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=83.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||++++++.. ......|..+.+.....+.+++. ...+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGE---------------RIKVQLWDTAGQERFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCe---------------EEEEEEEeCCChHHHHH
Confidence 689999999999999999999433 22222232222333334444432 25689999999632110
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
......++++|++++|+|++++.++..+..+. ....+++++ ++.++.|..+.+ ...+.+
T Consensus 67 ------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i---iv~nK~Dl~~~~~~~~~~~~~~~~ 137 (170)
T cd04115 67 ------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRI---LVGNKCDLREQIQVPTDLAQRFAD 137 (170)
T ss_pred ------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEE---EEEECccchhhcCCCHHHHHHHHH
Confidence 11233468899999999998765432221111 011234444 556666644321 111111
Q ss_pred hcc--CCCcchhh---HHHHHHHHHHHHHHH
Q 014450 205 GKA--KDSQSKLK---EDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~--~~~~Sak~---~~~~~~ll~~i~~~L 230 (424)
... ....||++ +.++.+++..+.+.+
T Consensus 138 ~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 111 11258887 777777777766544
No 159
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.20 E-value=2.4e-11 Score=110.69 Aligned_cols=149 Identities=14% Similarity=0.095 Sum_probs=85.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|++.++. .. ..+..|+.......+..++. ....+.+|||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~-~~~~~t~~~~~~~~i~~~~~--------------~~~~l~i~Dt~G~~~--- 61 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FP-EEYVPTVFENYVTNIQGPNG--------------KIIELALWDTAGQEE--- 61 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CC-CCCCCeeeeeeEEEEEecCC--------------cEEEEEEEECCCchh---
Confidence 489999999999999999999443 32 22222322222223333211 025689999999632
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccc----cCCchhhhhhhhhcccHHHHHHH----------HHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVD----PKSDVDVINLELVFSDLDQIEKR----------MEK 201 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~d----p~~d~~~i~~el~~~~~~~i~~~----------~~~ 201 (424)
+.......++.||++++|+|+++..++..+.. +.. ...+.+++ ++.++.|..... ...
T Consensus 62 ----~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~v~~~~~~~ 134 (187)
T cd04132 62 ----YDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIM---LVGLKTDLRKDKNLDRKVTPAQAES 134 (187)
T ss_pred ----HHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEeChhhhhCccccCCcCHHHHHH
Confidence 22222335689999999999987654322110 000 01123333 456666654321 111
Q ss_pred HHhhccC---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LKKGKAK---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.+.... ..+||+++.++.++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 135 VAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred HHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 1111111 12689999999999988887764
No 160
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.20 E-value=2.3e-11 Score=112.02 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCC-CCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~-p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...||+++|.++||||||++++.++ ... .++ |..+.+.....+.+++. ...+.+|||||.-.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~-~~~-~~~~~t~~~~~~~~~i~~~~~---------------~~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDG-STE-SPYGYNMGIDYKTTTILLDGR---------------RVKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC-CCC-CCCCCcceeEEEEEEEEECCE---------------EEEEEEEeCCCcHH
Confidence 3589999999999999999999943 222 222 22233333333444432 25689999999732
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC----CchhhhhhhhhcccHHHHHHH------HHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK----SDVDVINLELVFSDLDQIEKR------MEKLK 203 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~----~d~~~i~~el~~~~~~~i~~~------~~~i~ 203 (424)
+...+...++.||++|+|+|.++..++..+..+.+.+ .+.+++ ++.++.|..+.+ ...+.
T Consensus 68 -------~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~pii---lVGNK~DL~~~~~v~~~~~~~~a 137 (189)
T cd04121 68 -------FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKI---LVGNRLHLAFKRQVATEQAQAYA 137 (189)
T ss_pred -------HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE---EEEECccchhccCCCHHHHHHHH
Confidence 2233445678999999999998877643332221111 233334 556666643321 11111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... ....||+++.+++++++.+.+.+.
T Consensus 138 ~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 138 ERNGMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred HHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 1111 112699999999999999887654
No 161
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.20 E-value=2e-10 Score=105.67 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=56.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCC---------------CCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF---------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~---------------p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
.+|+++|.+|+|||||+|+|++........+ .++|.......+... ..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 65 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-----------------DT 65 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-----------------CE
Confidence 4899999999999999999995222211111 223333222222222 26
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+.+|||||..+ +.......++.+|++++|+|+++.
T Consensus 66 ~~~l~DtpG~~~-------~~~~~~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 66 KINIVDTPGHAD-------FGGEVERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred EEEEEECCCcHH-------HHHHHHHHHHhcCEEEEEEECCCC
Confidence 799999999843 334556678999999999999764
No 162
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.19 E-value=1.3e-11 Score=107.74 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=55.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
.|+++|.+|||||||+|+|++... .....| |...+...+..++ ..+.++||||...
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~-~~~~~~--t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~---- 56 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQF-SEDTIP--TVGFNMRKVTKGN-----------------VTLKVWDLGGQPR---- 56 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCC-CcCccC--CCCcceEEEEECC-----------------EEEEEEECCCCHh----
Confidence 489999999999999999995432 222233 2223333333332 5699999999732
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
+.......++.+|++++|+|+++..
T Consensus 57 ---~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 57 ---FRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred ---HHHHHHHHHhcCCEEEEEEECCCHH
Confidence 2223445678899999999997653
No 163
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.19 E-value=3e-11 Score=107.78 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=54.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|++... .....| ++.+........++. ...+.+|||||......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~---------------~~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVP-TVFDNYSATVTVDGK---------------QVNLGLWDTAGQEEYDR 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEECCE---------------EEEEEEEeCCCcccccc
Confidence 4899999999999999999995443 222222 222222222333321 25689999999854321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
.....++.+|++++|+|+++..+
T Consensus 64 -------~~~~~~~~~~~~i~v~d~~~~~s 86 (171)
T cd00157 64 -------LRPLSYPNTDVFLICFSVDSPSS 86 (171)
T ss_pred -------cchhhcCCCCEEEEEEECCCHHH
Confidence 11123478999999999987443
No 164
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.18 E-value=2.7e-11 Score=105.30 Aligned_cols=131 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.||||||||+|+|++.... ++ .|. .+.+ .-.+|||||....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~-~t~-----~~~~--------------------~~~~iDt~G~~~~--- 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YK-KTQ-----AVEY--------------------NDGAIDTPGEYVE--- 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----cc-cce-----eEEE--------------------cCeeecCchhhhh---
Confidence 7999999999999999999955321 11 111 1111 1268999997311
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH--HHH---H-HHhhc--cCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK--RME---K-LKKGK--AKD 209 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~--~~~---~-i~k~~--~~~ 209 (424)
...+.......+++||++++|+|++++...... ...+... .+.+ ++.+++|..++ ..+ . .+... +..
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~-~~~~~~~-~p~i---lv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 123 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDPESRFPP-GFASIFV-KPVI---GLVTKIDLAEADVDIERAKELLETAGAEPIF 123 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCCCcCCCh-hHHHhcc-CCeE---EEEEeeccCCcccCHHHHHHHHHHcCCCcEE
Confidence 111222333457999999999999877643211 0010000 0122 33555554321 111 1 11110 111
Q ss_pred CcchhhHHHHHHHHHHH
Q 014450 210 SQSKLKEDAEKAALEKI 226 (424)
Q Consensus 210 ~~Sak~~~~~~~ll~~i 226 (424)
.+||+++.+++++++.+
T Consensus 124 ~~Sa~~~~gi~~l~~~l 140 (142)
T TIGR02528 124 EISSVDEQGLEALVDYL 140 (142)
T ss_pred EEecCCCCCHHHHHHHH
Confidence 26899999988888765
No 165
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=8e-11 Score=123.52 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=34.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI 92 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~ 92 (424)
+..+.++++|++|+|||||+|+|+|.....+++.++||.
T Consensus 67 ~~~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 67 RLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 334899999999999999999999888888888898887
No 166
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.8e-11 Score=110.12 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=104.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.||+++|-.+||||||+++.. .+...-.-.+...+|.....+.+.|. +..+++|||+|.-+
T Consensus 23 ~KlVflGdqsVGKTslItRf~-yd~fd~~YqATIGiDFlskt~~l~d~---------------~vrLQlWDTAGQER--- 83 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFM-YDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER--- 83 (221)
T ss_pred EEEEEEccCccchHHHHHHHH-HhhhcccccceeeeEEEEEEEEEcCc---------------EEEEEEEecccHHH---
Confidence 799999999999999999999 66665555555556666566666653 27799999999843
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHHHHHHHH---hhcc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEKRMEKLK---KGKA 207 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~~~~~i~---k~~~ 207 (424)
+..-.-+.+|++.+++.|.|.++..++.+...+.+.+ .+.-++ |+.++.|..+++-.... +.++
T Consensus 84 ----FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~---LVGnKtDL~dkrqvs~eEg~~kAk 156 (221)
T KOG0094|consen 84 ----FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIF---LVGNKTDLSDKRQVSIEEGERKAK 156 (221)
T ss_pred ----HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEE---EEcccccccchhhhhHHHHHHHHH
Confidence 3335567899999999999999887765544443222 112222 56677777666432211 1111
Q ss_pred -CC----CcchhhHHHHHHHHHHHHHHHhC
Q 014450 208 -KD----SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 -~~----~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+ ..||+.|.|+..++.+|...||.
T Consensus 157 el~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 157 ELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 11 25999999999999999999874
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.17 E-value=3.6e-10 Score=101.25 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=52.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||++++++. .......|... .....+... +..+.+|||||....
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~-~~~~~~~pt~g--~~~~~i~~~-----------------~~~l~i~Dt~G~~~~--- 57 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSE-RSLESVVPTTG--FNSVAIPTQ-----------------DAIMELLEIGGSQNL--- 57 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcC-CCcccccccCC--cceEEEeeC-----------------CeEEEEEECCCCcch---
Confidence 4899999999999999999944 32222122211 111112221 267999999997432
Q ss_pred ccchhhhhhhhhhccceEEEEeecCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+...++.||++++|+|+++
T Consensus 58 ----~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 58 ----RKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred ----hHHHHHHHhhCCEEEEEEECCC
Confidence 2344567899999999999853
No 168
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.17 E-value=4.2e-11 Score=114.80 Aligned_cols=147 Identities=10% Similarity=0.062 Sum_probs=88.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||+++++++. .. ..+..|+.+.....+.+.+.. ..+.||||||.....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~-f~-~~y~pTi~d~~~k~~~i~~~~---------------~~l~I~Dt~G~~~~~- 62 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGR-FE-EQYTPTIEDFHRKLYSIRGEV---------------YQLDILDTSGNHPFP- 62 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCC-CC-CCCCCChhHhEEEEEEECCEE---------------EEEEEEECCCChhhh-
Confidence 479999999999999999998443 32 233344444444445554421 568899999974321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc--------------cCCchhhhhhhhhcccHHHHHH---HH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD--------------PKSDVDVINLELVFSDLDQIEK---RM 199 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d--------------p~~d~~~i~~el~~~~~~~i~~---~~ 199 (424)
......++.+|++++|+|+++..++..+....+ ...+.+++ ++.++.|..+. ..
T Consensus 63 ------~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piI---ivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 63 ------AMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMV---ICGNKADRDFPREVQR 133 (247)
T ss_pred ------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEE---EEEECccchhccccCH
Confidence 122234678999999999987654322211100 11233334 55666665431 11
Q ss_pred HHHHhhcc------CCCcchhhHHHHHHHHHHHHHHH
Q 014450 200 EKLKKGKA------KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 200 ~~i~k~~~------~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
..+..... ...+||+++.+++++++.+.+.+
T Consensus 134 ~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 134 DEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11211111 12379999999999999998766
No 169
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.17 E-value=1.8e-10 Score=106.57 Aligned_cols=84 Identities=18% Similarity=0.176 Sum_probs=58.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCC------ccc---------cCCCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGK------AQA---------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~------~~~---------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
.+|+++|++|+|||||+++|++... ... .-..++|++.....+... +.
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-----------------~~ 65 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA-----------------NR 65 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC-----------------Ce
Confidence 6899999999999999999984310 000 012344444433333222 36
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
++.|+||||+. .+.......++.+|++++|||+...
T Consensus 66 ~i~~iDtPG~~-------~~~~~~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 66 HYAHVDCPGHA-------DYIKNMITGAAQMDGAILVVSATDG 101 (195)
T ss_pred EEEEEECcCHH-------HHHHHHHHHhhhCCEEEEEEECCCC
Confidence 89999999983 3555677888999999999999764
No 170
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.6e-11 Score=110.32 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=99.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..||.++|..|||||||+-+.. .........|.+......-.+.+++.. ..+.+|||+|.-+..
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv-k~~F~e~~e~TIGaaF~tktv~~~~~~---------------ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV-KDQFHENIEPTIGAAFLTKTVTVDDNT---------------IKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh-hCccccccccccccEEEEEEEEeCCcE---------------EEEEEEEcCCccccc
Confidence 4799999999999999999999 444332222322222333345555533 668899999996554
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHHH---HHHHhhcc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKRM---EKLKKGKA 207 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~~---~~i~k~~~ 207 (424)
+. ..-..|+|+++|+|.|..+..++....+++..+ .++-+. |+.|+.|..++|. +.....+.
T Consensus 69 sl-------apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~via---lvGNK~DL~~~R~V~~~ea~~yAe 138 (200)
T KOG0092|consen 69 SL-------APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIA---LVGNKADLLERREVEFEEAQAYAE 138 (200)
T ss_pred cc-------ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEE---EecchhhhhhcccccHHHHHHHHH
Confidence 42 233579999999999999887654443332222 222222 5678888877432 12222221
Q ss_pred C-C----CcchhhHHHHHHHHHHHHHHHhCCC
Q 014450 208 K-D----SQSKLKEDAEKAALEKIQQALMDGK 234 (424)
Q Consensus 208 ~-~----~~Sak~~~~~~~ll~~i~~~L~~~~ 234 (424)
. + ..|||++.|+.+++..|.+.+|...
T Consensus 139 ~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 139 SQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred hcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 1 1 2599999999999999999997653
No 171
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.16 E-value=1e-09 Score=103.44 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=51.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCcc-ccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
++|+++|.+|||||||+++++++... ...++.+. .+.....+.+.+. ...+.+|||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~--- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGE---------------ESTLVVIDHWEQE--- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCE---------------EEEEEEEeCCCcc---
Confidence 48999999999999999999844322 12222111 1223333343321 2679999999984
Q ss_pred Ccccchhhhhhhhhh-ccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIR-EVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~-~aD~il~Vvda~~ 163 (424)
..+.. ..++ .+|++++|+|+++
T Consensus 62 ---~~~~~---~~~~~~ad~iilV~d~td 84 (221)
T cd04148 62 ---MWTED---SCMQYQGDAFVVVYSVTD 84 (221)
T ss_pred ---hHHHh---HHhhcCCCEEEEEEECCC
Confidence 11111 1234 8999999999853
No 172
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.16 E-value=7e-11 Score=106.83 Aligned_cols=148 Identities=18% Similarity=0.114 Sum_probs=84.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.||||||||+|++++. ... ..++.++..........++. ...+.+|||||..+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~-~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~- 63 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG-HFV-ESYYPTIENTFSKIIRYKGQ---------------DYHLEIVDTAGQDEYS- 63 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-CCc-cccCcchhhhEEEEEEECCE---------------EEEEEEEECCChHhhH-
Confidence 58999999999999999999944 332 22333443333344443321 1468999999974321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
.........+|++++|+|+++...+..+..... ...+.+++ ++.++.|.... ....+.+
T Consensus 64 ------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~i---lv~NK~Dl~~~~~~~~~~~~~~~~ 134 (180)
T cd04137 64 ------ILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIV---LVGNKSDLHTQRQVSTEEGKELAE 134 (180)
T ss_pred ------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEEchhhhhcCccCHHHHHHHHH
Confidence 122245678999999999887543211111000 01122233 44555554321 1111112
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.++.++++.+.+.+.
T Consensus 135 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (180)
T cd04137 135 SWGAAFLESSARENENVEEAFELLIEEIE 163 (180)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111 123688999999999888877664
No 173
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.16 E-value=1.3e-10 Score=106.57 Aligned_cols=149 Identities=22% Similarity=0.267 Sum_probs=85.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccc-----------------cCCCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA-----------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~-----------------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+++|..++|||||+++|++...... ....+.|.+.....+. ...
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~---------------~~~ 67 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFE---------------KNE 67 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEE---------------BTE
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccc---------------ccc
Confidence 36899999999999999999994332110 0112334333333333 011
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce---eeeccccccCCchhhhhhhhhcccHHHH
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI---VHVNGKVDPKSDVDVINLELVFSDLDQI 195 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~---~~~~~~~dp~~d~~~i~~el~~~~~~~i 195 (424)
....+.|+||||.. .+.......++.+|++++|||+.+.... .++.- . ....++.+ +.+|++|.+
T Consensus 68 ~~~~i~~iDtPG~~-------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~-~-~~~~~p~i---vvlNK~D~~ 135 (188)
T PF00009_consen 68 NNRKITLIDTPGHE-------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI-L-RELGIPII---VVLNKMDLI 135 (188)
T ss_dssp SSEEEEEEEESSSH-------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH-H-HHTT-SEE---EEEETCTSS
T ss_pred cccceeeccccccc-------ceeecccceecccccceeeeeccccccccccccccc-c-cccccceE---Eeeeeccch
Confidence 23779999999973 3455677778999999999999765320 00000 0 00011111 223444433
Q ss_pred HHHHH--------HH-HhhccC-------CCcchhhHHHHHHHHHHHHHHHh
Q 014450 196 EKRME--------KL-KKGKAK-------DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 196 ~~~~~--------~i-~k~~~~-------~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.++. .+ +..... -.+||.++.|+..|++.+.+++|
T Consensus 136 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 136 EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 22111 11 111111 12699999999999999999886
No 174
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.16 E-value=4.5e-11 Score=106.42 Aligned_cols=57 Identities=25% Similarity=0.414 Sum_probs=47.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...+|+++|.||||||||+|+|.+...+.+++.|++|++... +..+ ..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEcC------------------CCEEEEECcCC
Confidence 357899999999999999999998889999999999986543 2222 34899999996
No 175
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.15 E-value=4.4e-11 Score=112.71 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=54.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+++++++.... ..| |.......... ....+.+|||||......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~--Tig~~~~~~~~-----------------~~~~l~iwDt~G~e~~~~ 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVS--TVGGAFYLKQW-----------------GPYNISIWDTAGREQFHG 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCC--ccceEEEEEEe-----------------eEEEEEEEeCCCcccchh
Confidence 489999999999999999999444221 122 22211111111 125689999999743321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
.....++.+|++++|+|+++...+
T Consensus 60 -------l~~~~~~~ad~~IlV~Dvt~~~Sf 83 (220)
T cd04126 60 -------LGSMYCRGAAAVILTYDVSNVQSL 83 (220)
T ss_pred -------hHHHHhccCCEEEEEEECCCHHHH
Confidence 223347899999999999886543
No 176
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.15 E-value=1.1e-10 Score=105.59 Aligned_cols=148 Identities=13% Similarity=0.100 Sum_probs=87.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||++++.++... ..+..|+.+.....+.+++. ...+.+|||||.....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~- 64 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNE---------------PALLDILDTAGQAEFT- 64 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCE---------------EEEEEEEeCCCchhhH-
Confidence 68999999999999999999944322 11222221222222333331 2568999999974322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
......++.+|++++|+|.++..++..+.... ....+++++ ++.++.|..+.+ ...+.+
T Consensus 65 ------~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~pii---lvgNK~Dl~~~~~v~~~~~~~~a~ 135 (172)
T cd04141 65 ------AMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLV---LVGNKVDLESQRQVTTEEGRNLAR 135 (172)
T ss_pred ------HHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEE---EEEEChhhhhcCccCHHHHHHHHH
Confidence 23345578899999999998876543322110 011234444 567777754321 111111
Q ss_pred hccC--CCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKAK--DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~~--~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.... ...||+++.+++++++.+...+-
T Consensus 136 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 136 EFNCPFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred HhCCEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1111 12699999999999988876653
No 177
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.14 E-value=7.2e-11 Score=111.13 Aligned_cols=151 Identities=13% Similarity=0.005 Sum_probs=87.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|++||.+|||||||+++++.+. ......|....+...-.+...+. ...+.+|||||....
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~-f~~~~~~tig~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCC-CCCccCCccceeEEEEEEEECCe---------------EEEEEEEECCCchhh
Confidence 35899999999999999999987332 22111121111111112222221 257899999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc----cCCchhhhhhhhhcccHHHHHHHH--H--HHHhhc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD----PKSDVDVINLELVFSDLDQIEKRM--E--KLKKGK 206 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d----p~~d~~~i~~el~~~~~~~i~~~~--~--~i~k~~ 206 (424)
. ......++.+|++|+|+|.++...+..+..+.. ...+++++ ++.++.|...+.. . .+.+..
T Consensus 76 ~-------~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~pii---lvgNK~Dl~~~~v~~~~~~~~~~~ 145 (219)
T PLN03071 76 G-------GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV---LCGNKVDVKNRQVKAKQVTFHRKK 145 (219)
T ss_pred h-------hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEE---EEEEchhhhhccCCHHHHHHHHhc
Confidence 2 122345789999999999988765432222111 11234444 5567776543210 1 111111
Q ss_pred c--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 207 A--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 207 ~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. ...+||+++.++.++++.+.+.+.
T Consensus 146 ~~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 146 NLQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1 123699999999999998887764
No 178
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.14 E-value=3.1e-10 Score=101.79 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|+|||||+|+++++.. ...+..++.+.....+.+++.. ..+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEE---------------EEEEEEeCCCcccccc
Confidence 4899999999999999999995442 2223333333333334444321 4578999999754322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
.....++.+|++++|+|..+..+
T Consensus 64 -------~~~~~~~~~~~~ilv~~~~~~~s 86 (174)
T cd04135 64 -------LRPLSYPMTDVFLICFSVVNPAS 86 (174)
T ss_pred -------cccccCCCCCEEEEEEECCCHHH
Confidence 11124678999999999977654
No 179
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.13 E-value=7.3e-11 Score=105.92 Aligned_cols=145 Identities=21% Similarity=0.163 Sum_probs=80.6
Q ss_pred EEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcc
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (424)
|+++|.+|||||||+++++++. ......| ++.+.....+..++. ...+.+|||||......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~-- 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYSADVEVDGK---------------PVELGLWDTAGQEDYDR-- 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeeeEEEEECCE---------------EEEEEEEECCCCcccch--
Confidence 5899999999999999999543 2222222 222222222333321 25689999999743221
Q ss_pred cchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccc----cCCchhhhhhhhhcccHHHHHHH---------------
Q 014450 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVD----PKSDVDVINLELVFSDLDQIEKR--------------- 198 (424)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~d----p~~d~~~i~~el~~~~~~~i~~~--------------- 198 (424)
.....++.+|++++|+|+++..++..+.. +.. -..+.+++ ++.++.|.....
T Consensus 62 -----~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~~v~ 133 (174)
T smart00174 62 -----LRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPII---LVGTKLDLREDKSTLRELSKQKQEPVT 133 (174)
T ss_pred -----hchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE---EEecChhhhhChhhhhhhhcccCCCcc
Confidence 22234678999999999987654322110 000 01123333 445666654311
Q ss_pred ---HHHHHhhccC---CCcchhhHHHHHHHHHHHHHHH
Q 014450 199 ---MEKLKKGKAK---DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 199 ---~~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L 230 (424)
...+.+.... ..+||+++.++.++++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 134 YEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 0111111111 1268899999998888877654
No 180
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.13 E-value=8.9e-11 Score=106.44 Aligned_cols=145 Identities=17% Similarity=0.158 Sum_probs=83.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||++++.+ .... .++..|+.+.....+.+++. +..+.+|||||..+..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~-~~f~-~~~~pt~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~- 63 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT-NKFP-SEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQEDYD- 63 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc-CCCC-CCCCCceeeeeEEEEEECCE---------------EEEEEEEECCCccchh-
Confidence 5899999999999999999994 3332 23332332222223333331 2578999999984322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccc----cCCchhhhhhhhhcccHHHHHHH-------------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVD----PKSDVDVINLELVFSDLDQIEKR------------- 198 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~d----p~~d~~~i~~el~~~~~~~i~~~------------- 198 (424)
......++.+|++++|+|.++..++..+.. +.. ...+.+++ ++.++.|.....
T Consensus 64 ------~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~pii---lvgnK~Dl~~~~~~~~~l~~~~~~~ 134 (175)
T cd01874 64 ------RLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL---LVGTQIDLRDDPSTIEKLAKNKQKP 134 (175)
T ss_pred ------hhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEECHhhhhChhhHHHhhhccCCC
Confidence 122335788999999999987654322210 100 01133444 556666643220
Q ss_pred -----HHHHHhhcc---CCCcchhhHHHHHHHHHHHHH
Q 014450 199 -----MEKLKKGKA---KDSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 199 -----~~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~ 228 (424)
...+.+... ....||+++.|+.++++.+..
T Consensus 135 v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 135 ITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred cCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 001111111 112688999999888887765
No 181
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.13 E-value=1.3e-10 Score=113.65 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=64.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|+||||++|+|+|...+.+++++.+|..+........+ ..+.+|||||+.+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d 98 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIE 98 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCc
Confidence 34689999999999999999999988888888888777766554444333 6799999999976
Q ss_pred CCCcccchhhhhhhhh------hccceEEEEeec
Q 014450 134 GASQGEGLGNKFLSHI------REVDSILQVVRC 161 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i------~~aD~il~Vvda 161 (424)
..... ...+..+ ...|++|+|.+.
T Consensus 99 ~~~~~----e~~~~~ik~~l~~~g~DvVLyV~rL 128 (313)
T TIGR00991 99 GGYIN----DQAVNIIKRFLLGKTIDVLLYVDRL 128 (313)
T ss_pred hHHHH----HHHHHHHHHHhhcCCCCEEEEEecc
Confidence 53221 2222222 268999999654
No 182
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.11 E-value=1.1e-10 Score=115.99 Aligned_cols=62 Identities=31% Similarity=0.420 Sum_probs=52.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
...++++||+||||||||+|+|+|...+.+|++|++|+..+.-.+. ..+.++||||++.+
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~--------------------~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD--------------------DGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC--------------------CCeEEecCCCcCCC
Confidence 3478999999999999999999999999999999999876554432 34899999999866
Q ss_pred CC
Q 014450 135 AS 136 (424)
Q Consensus 135 ~~ 136 (424)
..
T Consensus 191 ~~ 192 (322)
T COG1161 191 KF 192 (322)
T ss_pred Cc
Confidence 54
No 183
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.11 E-value=6.2e-10 Score=99.56 Aligned_cols=145 Identities=18% Similarity=0.112 Sum_probs=82.8
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||+++|.+|||||||+|+++++... ..+|.++ ....-...+.+ ...++.+|||||....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~--- 60 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTP---------------ERVPTTIVDTSSRPQD--- 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecC---------------CeEEEEEEeCCCchhh---
Confidence 8999999999999999999954432 2233222 21111111211 1256899999997422
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccccC----CchhhhhhhhhcccHHHHHHH--------HHHHH-
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVDPK----SDVDVINLELVFSDLDQIEKR--------MEKLK- 203 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~dp~----~d~~~i~~el~~~~~~~i~~~--------~~~i~- 203 (424)
...+...++.+|++++|+|++++.++..+.. +...+ .+.+++ ++.++.|..+.. +..+.
T Consensus 61 ----~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pvi---iv~nK~Dl~~~~~~~~~~~~~~~~~~ 133 (166)
T cd01893 61 ----RANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPII---LVGNKSDLRDGSSQAGLEEEMLPIMN 133 (166)
T ss_pred ----hHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEEchhcccccchhHHHHHHHHHHH
Confidence 1234555789999999999987654322110 00000 123333 445666543321 11111
Q ss_pred hhc---cCCCcchhhHHHHHHHHHHHHHHH
Q 014450 204 KGK---AKDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 204 k~~---~~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
+.. .....||+++.+++++++.+.+.+
T Consensus 134 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 134 EFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred HHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 111 111268999999999998887765
No 184
>PRK13351 elongation factor G; Reviewed
Probab=99.11 E-value=1.1e-10 Score=127.44 Aligned_cols=228 Identities=17% Similarity=0.142 Sum_probs=118.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc--cccC---------------CCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA--QAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~--~~s~---------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+|+|.+|+|||||+++|+..... ..+. ..+.|+......+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~----------------- 70 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW----------------- 70 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-----------------
Confidence 469999999999999999999832211 0000 012222222222322
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~ 198 (424)
...++.||||||..+ +.......++.+|++++|+|+.+.... ..+-.+..+.. ..
T Consensus 71 ~~~~i~liDtPG~~d-------f~~~~~~~l~~aD~~ilVvd~~~~~~~----------------~~~~~~~~~~~--~~ 125 (687)
T PRK13351 71 DNHRINLIDTPGHID-------FTGEVERSLRVLDGAVVVFDAVTGVQP----------------QTETVWRQADR--YG 125 (687)
T ss_pred CCEEEEEEECCCcHH-------HHHHHHHHHHhCCEEEEEEeCCCCCCH----------------HHHHHHHHHHh--cC
Confidence 247899999999853 233566778999999999999653210 00000000000 00
Q ss_pred HHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEec-----cccccccC
Q 014450 199 MEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA-----NVAESDLA 272 (424)
Q Consensus 199 ~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~-----nv~~~~~~ 272 (424)
...+ -..++.+ +.+......++.+.+.|... ..+.+++......++ -+.+...+...|.- +....+.+
T Consensus 126 ~p~i-iviNK~D---~~~~~~~~~~~~i~~~l~~~--~~~~~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~ 199 (687)
T PRK13351 126 IPRL-IFINKMD---RVGADLFKVLEDIEERFGKR--PLPLQLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIP 199 (687)
T ss_pred CCEE-EEEECCC---CCCCCHHHHHHHHHHHHCCC--eEEEEeccccCCceEEEEECccceEEecccCCCCCceEEccCC
Confidence 0000 0001112 22334667777777777432 112122211111111 11122222222211 00001111
Q ss_pred CCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 273 DPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
....+.+.++ ..++-+.+++.+++..++||++..++...+...++.++..-.++|+|..
T Consensus 200 ----~~~~~~~~~~-----------~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~~~~~~~~~~PV~~g 258 (687)
T PRK13351 200 ----EELLEEVEEA-----------REKLIEALAEFDDELLELYLEGEELSAEQLRAPLREGTRSGHLVPVLFG 258 (687)
T ss_pred ----HHHHHHHHHH-----------HHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence 1222333332 2235556788888899999998778888888888888888889999853
No 185
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.10 E-value=7.2e-10 Score=99.52 Aligned_cols=85 Identities=18% Similarity=0.109 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||++++.++.. . ..+..|+.+.....+.+.+.. .++.+|||||......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF-P-EVYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCccccceEEEEEECCEE---------------EEEEEEeCCCchhhhh
Confidence 5899999999999999999994332 2 122223323333344444321 5689999999732211
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
.....++++|++++|+|+++..
T Consensus 65 -------~~~~~~~~~d~~i~v~~~~~~~ 86 (175)
T cd01870 65 -------LRPLSYPDTDVILMCFSIDSPD 86 (175)
T ss_pred -------ccccccCCCCEEEEEEECCCHH
Confidence 1123468899999999987654
No 186
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.09 E-value=2.4e-09 Score=107.49 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=66.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcC----CCc-----------cccCCCC---ccccceE---EEeecCCCcchhhccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVEN----GKA-----------QAANFPF---CTIEPNV---GIVAVPDPRLHVLSGL 112 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~----~~~-----------~~s~~p~---tT~~~~~---~~~~~~~~~~d~l~~~ 112 (424)
+....||+||+-|+|||||+|++++. ..+ .+++.++ ||.+|.. -.+.+.-
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~--------- 85 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI--------- 85 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec---------
Confidence 34589999999999999999999987 566 6888889 8888865 2222211
Q ss_pred cccccccCceEEEEeCCCCCCCCCcccchhhh----------------------hhhhhh-ccceEEEEe-ec
Q 014450 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNK----------------------FLSHIR-EVDSILQVV-RC 161 (424)
Q Consensus 113 ~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~----------------------~l~~i~-~aD~il~Vv-da 161 (424)
..-....+.|+||+|+......|....+. +...+. ++|+.|+|. |+
T Consensus 86 ---~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDg 155 (492)
T TIGR02836 86 ---NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDG 155 (492)
T ss_pred ---cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCC
Confidence 00112569999999997655444433334 455566 778777777 65
No 187
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.08 E-value=2.4e-10 Score=106.28 Aligned_cols=102 Identities=23% Similarity=0.195 Sum_probs=61.7
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC-c---eeeeccccccCCchhhhhhhhhcccHHHHH
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-D---IVHVNGKVDPKSDVDVINLELVFSDLDQIE 196 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~-~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~ 196 (424)
.++.||||||. +.+...++..++.+|++++|+|+.++. . ..++... ......+++ ++++++|...
T Consensus 83 ~~i~~iDtPG~-------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~~~~~ii---ivvNK~Dl~~ 151 (203)
T cd01888 83 RHVSFVDCPGH-------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIMGLKHII---IVQNKIDLVK 151 (203)
T ss_pred cEEEEEECCCh-------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHcCCCcEE---EEEEchhccC
Confidence 67999999995 456667888889999999999998631 1 0010000 000000111 3456665442
Q ss_pred H-----HHHHHHhhcc-----C---CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 197 K-----RMEKLKKGKA-----K---DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 197 ~-----~~~~i~k~~~-----~---~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
. .+..+.+... . -.+||+++.+++++++.+.+.+|++
T Consensus 152 ~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 152 EEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 1 1222222211 1 1269999999999999999988764
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.08 E-value=4.5e-10 Score=98.95 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=57.8
Q ss_pred EEEEEecCCCCchHHHHHhhc-CCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE-NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g-~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+|+++|.+|||||||+|+|++ ......++.+++|....... .+ ..+.++||||+.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN--VN------------------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE--cc------------------CeEEEecCCCcccccc
Confidence 489999999999999999994 44455677777776543321 11 3699999999854321
Q ss_pred c---c---cchhhhhhhhhhccceEEEEeecCCC
Q 014450 137 Q---G---EGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 137 ~---~---~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
. . ..+...++.....++++++|+|....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 94 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHG 94 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcC
Confidence 1 1 11223344444567899999998654
No 189
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.07 E-value=2.3e-10 Score=112.11 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=52.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
....+|+++|.||||||||+|+|++...+.+++.|++|++... +.++ .++.++||||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC------------------CcEEEEECCCcCC
Confidence 3457999999999999999999998888899999999988653 3322 3589999999976
Q ss_pred CCC
Q 014450 134 GAS 136 (424)
Q Consensus 134 ~~~ 136 (424)
+..
T Consensus 179 ~~~ 181 (287)
T PRK09563 179 PKL 181 (287)
T ss_pred CCC
Confidence 543
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.06 E-value=2.3e-10 Score=122.27 Aligned_cols=147 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCC--ccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+.|+++|++|+|||||+|+|+|... ......++.|++.....+..++ ..+.||||||.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------~~v~~iDtPGh--- 60 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------YRLGFIDVPGH--- 60 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------EEEEEEECCCH---
Confidence 3699999999999999999996432 2222345777776666666554 56899999996
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCC---ceeeeccccccCCchh-hhhhhhhcccHHHHHH--------HHHH-
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN---DIVHVNGKVDPKSDVD-VINLELVFSDLDQIEK--------RMEK- 201 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~---~~~~~~~~~dp~~d~~-~i~~el~~~~~~~i~~--------~~~~- 201 (424)
+.+...+...+..+|++++|+|+++.. ...|+.- ... ..++ .+ +++|++|.+.. .+..
T Consensus 61 ----e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~i-l~~-lgi~~iI---VVlNK~Dlv~~~~~~~~~~ei~~~ 131 (581)
T TIGR00475 61 ----EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAV-LDL-LGIPHTI---VVITKADRVNEEEIKRTEMFMKQI 131 (581)
T ss_pred ----HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHH-HHH-cCCCeEE---EEEECCCCCCHHHHHHHHHHHHHH
Confidence 345556677788999999999998742 1111100 000 0011 11 22344433211 1111
Q ss_pred HHhh-----ccCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 202 LKKG-----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 202 i~k~-----~~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+... .+.-.+||+++.|++++.+.+.+.++.
T Consensus 132 l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 132 LNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 1111 111126999999999999888877754
No 191
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.06 E-value=3.7e-10 Score=102.78 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=88.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.||+++|.+++|||||+.+++ .........| |.-+.....+.+++. ...+.+|||+|..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~-~~~f~~~~~~-Ti~~~~~~~~~~~~~---------------~v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT-SNKFPTDYIP-TVFDNFSANVSVDGN---------------TVNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh-cCCCCCCCCC-cceeeeEEEEEECCE---------------EEEEEEEECCCCccccc
Confidence 589999999999999999999 4443222222 221222222333331 26689999999744322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeee-ccccccC----CchhhhhhhhhcccHHHHHHH-------------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV-NGKVDPK----SDVDVINLELVFSDLDQIEKR------------- 198 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~-~~~~dp~----~d~~~i~~el~~~~~~~i~~~------------- 198 (424)
.....+++||++++|.|.++..++..+ ..+...+ .+++++ ++.++.|..+.+
T Consensus 65 -------~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~pii---lvgnK~Dl~~~~~~~~~~~~~~~v~ 134 (176)
T cd04133 65 -------LRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIV---LVGTKLDLRDDKQYLADHPGASPIT 134 (176)
T ss_pred -------cchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEeChhhccChhhhhhccCCCCCC
Confidence 233467899999999999887765332 1111111 234444 556776653321
Q ss_pred ---HHHHHhhccC---CCcchhhHHHHHHHHHHHHHHH
Q 014450 199 ---MEKLKKGKAK---DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 199 ---~~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L 230 (424)
...+.+.... ...||+++.+++++++.+.+.+
T Consensus 135 ~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 135 TAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1112221111 1269999999999999988765
No 192
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.06 E-value=2.5e-10 Score=101.45 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=49.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
....+++++|.||+|||||+|+|++...+.+++.|+||++....... ..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD--------------------NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec--------------------CCEEEEECCCC
Confidence 34689999999999999999999987778899999999998765431 34899999996
No 193
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.04 E-value=3.8e-10 Score=119.04 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=56.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc--CCCccccCCCC------ccccceEEEeecCCCcchhhccccccccccCceEEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANFPF------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g--~~~~~~s~~p~------tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lv 126 (424)
...+|+|+|++|+|||||+++|+. +.....+.... ++.|.. +....|-..+.....+..+.+.++.+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~----~~E~~rgiSi~~~~~~~~~~~~~inli 84 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWM----EMEKQRGISVTSSVMQFPYRDCLINLL 84 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCc----HHHHhhCCceeeeeEEEEECCEEEEEE
Confidence 346899999999999999999972 22111111111 111100 000000000001111122335789999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
||||..++ .......++.+|++++|+|+.+
T Consensus 85 DTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 85 DTPGHEDF-------SEDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred ECCCchhh-------HHHHHHHHHHCCEEEEEEecCC
Confidence 99998433 3456777899999999999864
No 194
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.04 E-value=1.2e-09 Score=98.36 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|+|||||+++++++ .. ..+++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN-GY-PTEYVPTAFDNFSVVVLVDGK---------------PVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CC-CCCCCCceeeeeeEEEEECCE---------------EEEEEEEECCCChhhcc
Confidence 48999999999999999999843 32 334444544433333444331 25688999999843322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
.....++.+|++++|+|++++.++
T Consensus 64 -------~~~~~~~~a~~~i~v~d~~~~~sf 87 (173)
T cd04130 64 -------LRPLCYPDTDVFLLCFSVVNPSSF 87 (173)
T ss_pred -------ccccccCCCcEEEEEEECCCHHHH
Confidence 122356889999999999876543
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.04 E-value=3.6e-10 Score=116.77 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=63.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC------------------------------CCCccccceEEEeecCCCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDPR 105 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~------------------------------~p~tT~~~~~~~~~~~~~~ 105 (424)
.++|+++|++|+|||||+|+|+....+.... .+++|++.....+...+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 4789999999999999999999443332211 47788888777766554
Q ss_pred chhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 106 ~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++.||||||..+ +.......++.+|++++|+|+++
T Consensus 84 ---------------~~i~liDtpG~~~-------~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 84 ---------------YYFTIVDCPGHRD-------FVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred ---------------eEEEEEECCCccc-------chhhHhhchhcCCEEEEEEEccc
Confidence 6799999999632 22344555789999999999976
No 196
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.04 E-value=1.5e-09 Score=98.37 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=80.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||+.+++++. .. ..+..|+.+...-.+...+. ..++.+|||||.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~- 63 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA-FP-GEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD- 63 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CC-CcCCCcceeeeEEEEEECCE---------------EEEEEEEECCCchhhh-
Confidence 589999999999999999999433 22 22222222211112222221 2568999999973221
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-cc----ccCCchhhhhhhhhcccHHHHHHH--H----------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KV----DPKSDVDVINLELVFSDLDQIEKR--M---------- 199 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~----dp~~d~~~i~~el~~~~~~~i~~~--~---------- 199 (424)
......++.+|++++|+|+++..++..+.. +. ....+.+++ ++.++.|..+.+ .
T Consensus 64 ------~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~pii---lvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (174)
T cd01871 64 ------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII---LVGTKLDLRDDKDTIEKLKEKKLTP 134 (174)
T ss_pred ------hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEeeChhhccChhhHHHHhhccCCC
Confidence 122345788999999999987654322110 00 001123333 445666543211 0
Q ss_pred ------HHHHhhccC---CCcchhhHHHHHHHHHHHHH
Q 014450 200 ------EKLKKGKAK---DSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 200 ------~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~ 228 (424)
..+.+..+. ...||+++.+++++++.+.+
T Consensus 135 v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 135 ITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 001111111 13689999999998887765
No 197
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.04 E-value=5.9e-10 Score=101.50 Aligned_cols=89 Identities=12% Similarity=0.113 Sum_probs=57.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
+||+++|.+|||||||++++.++ .... .+..|.-+.....+.+++. ...+.+|||||.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~-~f~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~iwDt~G~~~~~- 63 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD-CYPE-TYVPTVFENYTASFEIDEQ---------------RIELSLWDTSGSPYYD- 63 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-cCCC-CcCCceEEEEEEEEEECCE---------------EEEEEEEECCCchhhh-
Confidence 68999999999999999999944 3322 2222221111122334332 1568999999973221
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceee
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~ 169 (424)
......++.||++++|+|.++..++..
T Consensus 64 ------~~~~~~~~~a~~~ilvfdit~~~Sf~~ 90 (178)
T cd04131 64 ------NVRPLCYPDSDAVLICFDISRPETLDS 90 (178)
T ss_pred ------hcchhhcCCCCEEEEEEECCChhhHHH
Confidence 122345789999999999988766433
No 198
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=2.1e-10 Score=103.49 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=102.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...+||.|+|-.|||||.|+-++. .....-+-.....+|.....+.+.+++ ..+++|||+|.
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~-~~~f~e~~~sTIGVDf~~rt~e~~gk~---------------iKlQIWDTAGQ-- 68 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFK-DDTFTESYISTIGVDFKIRTVELDGKT---------------IKLQIWDTAGQ-- 68 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhc-cCCcchhhcceeeeEEEEEEeeecceE---------------EEEEeeecccc--
Confidence 446899999999999999999999 444433333344455556667776654 57999999998
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCch--hhhhhhhhcccHHHHHHHHHHH---Hhhcc-
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV--DVINLELVFSDLDQIEKRMEKL---KKGKA- 207 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~--~~i~~el~~~~~~~i~~~~~~i---~k~~~- 207 (424)
+.+...+.+..|+|++||+|.|.+...++..+..+...++.. +.++.-|+.|+.|..+++.... ...+.
T Consensus 69 -----ERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 69 -----ERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE 143 (205)
T ss_pred -----HHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence 445567888999999999999999887654443332211110 0111225677777666543211 11111
Q ss_pred -----CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 208 -----KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 -----~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
....|||+..|+++.+..+...+..
T Consensus 144 ~~~~~f~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 144 LGIPIFLETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred cCCcceeecccCCccCHHHHHHHHHHHHHH
Confidence 1236899999999888887776654
No 199
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.03 E-value=3.8e-10 Score=103.45 Aligned_cols=148 Identities=17% Similarity=0.105 Sum_probs=82.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|||||||+++++++.... ...| |..+.....+..++. ...+.+|||||.-....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~-~~~~-t~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ-VYEP-TVFENYVHDIFVDGL---------------HIELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-ccCC-cceeeeEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 489999999999999999999543321 1112 111111112222221 25689999999743221
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-cc----ccCCchhhhhhhhhcccHHHHHHHH------------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KV----DPKSDVDVINLELVFSDLDQIEKRM------------ 199 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~----dp~~d~~~i~~el~~~~~~~i~~~~------------ 199 (424)
.....++.+|++++|+|.++..++..+.. +. .-..+.+++ ++.++.|..+.+-
T Consensus 64 -------l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~pii---lvgNK~Dl~~~~~~~~~~~~~~~~~ 133 (189)
T cd04134 64 -------LRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLV---LVALKCDLREARNERDDLQRYGKHT 133 (189)
T ss_pred -------cccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEEChhhccChhhHHHHhhccCCC
Confidence 11234688999999999988765322110 00 001123333 4566666533210
Q ss_pred ------HHHHhhcc---CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 200 ------EKLKKGKA---KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 200 ------~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..+.+... ...+||+++.++.++++.+.+.+.
T Consensus 134 v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 134 ISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 01111111 112689999999999888887664
No 200
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=3.3e-10 Score=103.48 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=105.2
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
....++|.+||-++||||+++-++. ...+..+......+|.....+.+++.+ ..+++|||+|.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~-d~~f~~~~~sTiGIDFk~kti~l~g~~---------------i~lQiWDtaGQ- 71 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFS-DDSFNTSFISTIGIDFKIKTIELDGKK---------------IKLQIWDTAGQ- 71 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhh-hccCcCCccceEEEEEEEEEEEeCCeE---------------EEEEEEEcccc-
Confidence 3456899999999999999999999 655544444444455555566666633 67999999998
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHHH---HHHHh
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKRM---EKLKK 204 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~~---~~i~k 204 (424)
+.+...+.+.++.|+.+++|+|.+++.++.++..+...+ .+.+.+ |+.|++|.-++|. ++-++
T Consensus 72 ------erf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~---LvGNK~D~~~~R~V~~e~ge~ 142 (207)
T KOG0078|consen 72 ------ERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKI---LVGNKCDLEEKRQVSKERGEA 142 (207)
T ss_pred ------hhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEE---EeeccccccccccccHHHHHH
Confidence 455668899999999999999999888766654443222 133333 6678887665422 22233
Q ss_pred hccC-----CCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKAK-----DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~-----~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.+.. ...|||++.|+++.+-.+.+.+
T Consensus 143 lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 143 LAREYGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred HHHHhCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 3221 2269999999999776666544
No 201
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.02 E-value=2.5e-09 Score=95.51 Aligned_cols=87 Identities=25% Similarity=0.217 Sum_probs=59.3
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
....++|.|.|-+|+|||||+|.++ .....--.+.....+....-+.+++.. ..+++|||+|.-
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv-~~kF~~qykaTIgadFltKev~Vd~~~---------------vtlQiWDTAGQE 69 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYV-NKKFSQQYKATIGADFLTKEVQVDDRS---------------VTLQIWDTAGQE 69 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHH-HHHHHHHhccccchhheeeEEEEcCeE---------------EEEEEEecccHH
Confidence 3456899999999999999999999 443322222222223333334555432 679999999986
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
++.+.+ ....|.||..++|.|..
T Consensus 70 RFqsLg-------~aFYRgaDcCvlvydv~ 92 (210)
T KOG0394|consen 70 RFQSLG-------VAFYRGADCCVLVYDVN 92 (210)
T ss_pred Hhhhcc-------cceecCCceEEEEeecC
Confidence 665433 34478999999999873
No 202
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.01 E-value=2.8e-10 Score=123.34 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=62.7
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++.|+|+|++|+|||||+++|++. ....+..++.|.+.....+.+.. . .....+.||||||..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~-~~~~~e~~GiTq~i~~~~v~~~~----------~---~~~~kItfiDTPGhe 306 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKT-QIAQKEAGGITQKIGAYEVEFEY----------K---DENQKIVFLDTPGHE 306 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhc-cCccccCCccccccceEEEEEEe----------c---CCceEEEEEECCcHH
Confidence 456789999999999999999999944 33334445666554433333210 0 012679999999972
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+.......++.+|++++|+|+.+.
T Consensus 307 -------~F~~mr~rg~~~aDiaILVVDA~dG 331 (742)
T CHL00189 307 -------AFSSMRSRGANVTDIAILIIAADDG 331 (742)
T ss_pred -------HHHHHHHHHHHHCCEEEEEEECcCC
Confidence 3334445677899999999998764
No 203
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.01 E-value=1.2e-09 Score=116.50 Aligned_cols=88 Identities=17% Similarity=0.145 Sum_probs=63.5
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..+++.|+++|++|+|||||+++|.+. .......++.|.+.....+.+++ ...+.||||||..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~-~v~~~e~~GIT~~ig~~~v~~~~----------------~~~i~~iDTPGhe 146 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKT-KVAQGEAGGITQHIGAYHVENED----------------GKMITFLDTPGHE 146 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC-CcccccCCceeecceEEEEEECC----------------CcEEEEEECCCCc
Confidence 345689999999999999999999954 44445566777665544444433 1269999999974
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+. ......++.+|++++|+|+.+.
T Consensus 147 ~F~-------~~r~rga~~aDiaILVVda~dg 171 (587)
T TIGR00487 147 AFT-------SMRARGAKVTDIVVLVVAADDG 171 (587)
T ss_pred chh-------hHHHhhhccCCEEEEEEECCCC
Confidence 332 2334567889999999998753
No 204
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.9e-10 Score=121.57 Aligned_cols=234 Identities=16% Similarity=0.140 Sum_probs=135.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchh----------hccccccccccC-ceE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV----------LSGLSKSQKAVP-ASV 123 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~----------l~~~~~~~~~~~-~~i 123 (424)
...+|||+|+--+|||||..+|+ .... +....|.+..++..+|| +.....+.-|.+ ..|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL-~~tG---------~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~i 78 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERIL-FYTG---------IISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRI 78 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHH-HHcC---------CcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEE
Confidence 34689999999999999999998 2221 11113333333333443 111222334443 889
Q ss_pred EEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHH-HHHHHH
Q 014450 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE-KRMEKL 202 (424)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~-~~~~~i 202 (424)
.||||||.+++.. ..-+.++-+|..+.|+|+.+. + ..++|.+|..+.... .++.++
T Consensus 79 NlIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveG------------V----~~QTEtv~rqa~~~~vp~i~fi 135 (697)
T COG0480 79 NLIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEG------------V----EPQTETVWRQADKYGVPRILFV 135 (697)
T ss_pred EEeCCCCccccHH-------HHHHHHHhhcceEEEEECCCC------------e----eecHHHHHHHHhhcCCCeEEEE
Confidence 9999999988765 777889999999999999432 1 122223333222111 122233
Q ss_pred HhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEe-ccccc-cccCCCCCCcc
Q 014450 203 KKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYV-ANVAE-SDLADPGSNPH 279 (424)
Q Consensus 203 ~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~-~nv~~-~~~~~~~~~~~ 279 (424)
+|+ | +.+.+.....+.+.+.|.. ..-+.++.....+.+. .+.+...+.+.|. ..... .++| .+.
T Consensus 136 NKm----D---R~~a~~~~~~~~l~~~l~~--~~~~v~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip----~~~ 202 (697)
T COG0480 136 NKM----D---RLGADFYLVVEQLKERLGA--NPVPVQLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIP----ADL 202 (697)
T ss_pred ECc----c---ccccChhhhHHHHHHHhCC--CceeeeccccCccccCceeEhhhcCeEEEcCCcccceeeCC----HHH
Confidence 444 2 3444566667777777732 2222222211111122 2344566666665 11111 1122 111
Q ss_pred hHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 280 VNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 280 ~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
...-.++ +..+.+.+++.+++..+.||++..++...+.+.++.......+.+++.
T Consensus 203 ~~~~~e~-----------r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~~~~~~~~pvl~ 257 (697)
T COG0480 203 KEIAEEA-----------REKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKGTIAGKIVPVLC 257 (697)
T ss_pred HhHHHHH-----------HHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHhhhccceeeEEe
Confidence 1111222 556777788888888999999988888888888888888888888884
No 205
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.00 E-value=4.9e-10 Score=109.18 Aligned_cols=61 Identities=34% Similarity=0.481 Sum_probs=50.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
...+|++||.||||||||+|+|++...+.+++.|++|+.++. +.+. ..+.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEE--EEeC------------------CCEEEEECCCcccC
Confidence 457999999999999999999998888999999999988653 3332 34899999999765
Q ss_pred C
Q 014450 135 A 135 (424)
Q Consensus 135 ~ 135 (424)
.
T Consensus 177 ~ 177 (276)
T TIGR03596 177 K 177 (276)
T ss_pred C
Confidence 4
No 206
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.00 E-value=1.1e-09 Score=98.29 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=54.4
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|||||||+|++++.... ....|...+...+...+ ..+.++||||..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~----~~~~t~g~~~~~~~~~~-----------------~~~~i~D~~G~~----- 54 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPK----KVAPTVGFTPTKLRLDK-----------------YEVCIFDLGGGA----- 54 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCc----cccCcccceEEEEEECC-----------------EEEEEEECCCcH-----
Confidence 4899999999999999999954211 12233333333444332 679999999962
Q ss_pred ccchhhhhhhhhhccceEEEEeecCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+...+...++.||++++|+|+++
T Consensus 55 --~~~~~~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 55 --NFRGIWVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred --HHHHHHHHHHcCCCEEEEEEECCc
Confidence 233345677899999999999853
No 207
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.99 E-value=9.9e-10 Score=100.47 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=84.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.++||||||++++.++. .. ..+..|..+.....+.+++. ...+.+|||+|....
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~-~~~~pT~~~~~~~~~~~~~~---------------~~~l~iwDtaG~e~~ 66 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FP-ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 66 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CC-CccCCceeeeeEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 35799999999999999999999433 22 22222221211222333332 156999999997322
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeee-ccccccC----CchhhhhhhhhcccHHHHHH------------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV-NGKVDPK----SDVDVINLELVFSDLDQIEK------------ 197 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~-~~~~dp~----~d~~~i~~el~~~~~~~i~~------------ 197 (424)
.......+++||++++|+|.++..++..+ ..+...+ .+.+++ ++.++.|..+.
T Consensus 67 -------~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~pii---lVgNK~DL~~~~~~~~~~~~~~~ 136 (182)
T cd04172 67 -------DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKML---LVGCKSDLRTDLTTLVELSNHRQ 136 (182)
T ss_pred -------HhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEE---EEeEChhhhcChhhHHHHHhcCC
Confidence 12233457899999999999887664332 1111110 123333 55666664320
Q ss_pred ------HHHHHHhhcc---CCCcchhhHHH-HHHHHHHHHHH
Q 014450 198 ------RMEKLKKGKA---KDSQSKLKEDA-EKAALEKIQQA 229 (424)
Q Consensus 198 ------~~~~i~k~~~---~~~~Sak~~~~-~~~ll~~i~~~ 229 (424)
....+.+... ....||+++.+ +.++++.+...
T Consensus 137 ~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 137 TPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred CCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 1111111111 11258888887 88887776653
No 208
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.99 E-value=1.3e-09 Score=119.23 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=64.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..+++.|+|+|++|+|||||+++|.+. ....+..++.|.+.....+.+++ ..+.||||||..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~-~v~~~e~~GIT~~iga~~v~~~~-----------------~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKT-NVAAGEAGGITQHIGAYQVETNG-----------------GKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhC-CccccccCceeeeccEEEEEECC-----------------EEEEEEECCCCc
Confidence 456789999999999999999999943 33445566677665544454443 569999999975
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+. ......++.+|++++|+|+.+.
T Consensus 349 ~F~-------~m~~rga~~aDiaILVVdAddG 373 (787)
T PRK05306 349 AFT-------AMRARGAQVTDIVVLVVAADDG 373 (787)
T ss_pred cch-------hHHHhhhhhCCEEEEEEECCCC
Confidence 432 2444567889999999999763
No 209
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.98 E-value=1e-09 Score=98.09 Aligned_cols=101 Identities=24% Similarity=0.268 Sum_probs=61.4
Q ss_pred EEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEee-cCCCc-----------------chhh-----------
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA-VPDPR-----------------LHVL----------- 109 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~-~~~~~-----------------~d~l----------- 109 (424)
|+++|..++|||||+|+|+|....+++..| ||..+..-... -+... ++.+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 789999999999999999987766666554 44444332221 11100 0000
Q ss_pred c----------cccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 110 S----------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 110 ~----------~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
. ..+.........+.|+||||+........ +.+...+..+|++++|+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTS
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCc
Confidence 0 01111122335699999999965333222 455666789999999999854
No 210
>PRK12735 elongation factor Tu; Reviewed
Probab=98.98 E-value=3.1e-09 Score=108.79 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=58.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC------CCccc---------cCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN------GKAQA---------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~------~~~~~---------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|++|+|||||+|+|++. ..... ....++|++.....+...
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~----------------- 73 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA----------------- 73 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC-----------------
Confidence 4589999999999999999999951 11100 012344444332222222
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||. +.+...+...+..+|++++|+|+.+.
T Consensus 74 ~~~i~~iDtPGh-------~~f~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 74 NRHYAHVDCPGH-------ADYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred CcEEEEEECCCH-------HHHHHHHHhhhccCCEEEEEEECCCC
Confidence 367999999997 24555667778899999999999764
No 211
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.97 E-value=1.6e-09 Score=114.21 Aligned_cols=93 Identities=25% Similarity=0.260 Sum_probs=62.5
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
.....+|+++|+||+||||++|+|+|...+.++....+|...........+ .++.+|||||+.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG-----------------~~L~VIDTPGL~ 177 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG-----------------VKIRVIDTPGLK 177 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC-----------------ceEEEEECCCCC
Confidence 344679999999999999999999988878887764344344333223333 569999999998
Q ss_pred CCCCc---ccchhhhhhhhhh--ccceEEEEeecC
Q 014450 133 KGASQ---GEGLGNKFLSHIR--EVDSILQVVRCF 162 (424)
Q Consensus 133 ~~~~~---~~~~~~~~l~~i~--~aD~il~Vvda~ 162 (424)
+.... .+.+.+.....+. .+|++|+|.+..
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 65321 1222233333333 489999998753
No 212
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.97 E-value=3.5e-09 Score=97.96 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=50.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC----CCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN----FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~----~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
+++|+++|.+|||||||+|+|+|........ ...+|... ..+..++ ...+.+|||||+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~----------------~~~l~l~DtpG~ 62 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK----------------FPNVTLWDLPGI 62 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC----------------CCCceEEeCCCC
Confidence 3689999999999999999999643321111 11122211 1111111 246899999999
Q ss_pred CCCCCcccchhhhhhhh--hhccceEEEEeec
Q 014450 132 VKGASQGEGLGNKFLSH--IREVDSILQVVRC 161 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~--i~~aD~il~Vvda 161 (424)
.......+ .++.. +.++|++++|.+.
T Consensus 63 ~~~~~~~~----~~l~~~~~~~~d~~l~v~~~ 90 (197)
T cd04104 63 GSTAFPPD----DYLEEMKFSEYDFFIIISST 90 (197)
T ss_pred CcccCCHH----HHHHHhCccCcCEEEEEeCC
Confidence 65432222 23222 5678999998654
No 213
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.97 E-value=1.4e-09 Score=101.83 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=58.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccC-CCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~-~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
++|.++|.+|+||||+.|.|+|...+..+. ...+|.........+.+ ..+.++||||+.+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG-----------------RQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT-----------------EEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc-----------------eEEEEEeCCCCCCCc
Confidence 479999999999999999999888776653 34567777776666665 679999999997654
Q ss_pred Ccccchhhhhhh----hhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLS----HIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~----~i~~aD~il~Vvda~ 162 (424)
...+...+.... .....+++|+|++..
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC
Confidence 433333332222 235689999999874
No 214
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.97 E-value=9.5e-09 Score=90.17 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=59.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+.++|-|+|+-||||||+++.|.+.....+++ |.-.+...+.+++ .++.+||.-|..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~-----------------~~L~iwDvGGq~-- 71 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKG-----------------YTLNIWDVGGQK-- 71 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecc-----------------eEEEEEEcCCcc--
Confidence 36899999999999999999999655333332 2233344456655 889999999973
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+.+-+.++...+|++++|+|.+
T Consensus 72 -----~lr~~W~nYfestdglIwvvDss 94 (185)
T KOG0073|consen 72 -----TLRSYWKNYFESTDGLIWVVDSS 94 (185)
T ss_pred -----hhHHHHHHhhhccCeEEEEEECc
Confidence 33345667789999999999984
No 215
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.97 E-value=1.2e-09 Score=100.33 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=83.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+++++.+ .... .+..|.-+.....+.+++. ...+.+|||||.-...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~-~f~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~e~~~- 65 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTN-AFPK-EYIPTVFDNYSAQTAVDGR---------------TVSLNLWDTAGQEEYD- 65 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhC-CCCc-CCCCceEeeeEEEEEECCE---------------EEEEEEEECCCchhhh-
Confidence 79999999999999999999943 3221 1111111111112223321 2568999999973322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccc----cCCchhhhhhhhhcccHHHHHHH--H----------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVD----PKSDVDVINLELVFSDLDQIEKR--M---------- 199 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~d----p~~d~~~i~~el~~~~~~~i~~~--~---------- 199 (424)
......+++||++++|+|.++..++..+.. +.. ...+++++ ++.++.|..+.+ .
T Consensus 66 ------~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~pii---lvgNK~DL~~~~~~~~~~~~~~~~~ 136 (191)
T cd01875 66 ------RLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPIL---LVGTKKDLRNDADTLKKLKEQGQAP 136 (191)
T ss_pred ------hhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEE---EEEeChhhhcChhhHHHHhhccCCC
Confidence 223345789999999999988765433321 111 01234444 556666643211 0
Q ss_pred ------HHHHhhcc---CCCcchhhHHHHHHHHHHHHHHH
Q 014450 200 ------EKLKKGKA---KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 200 ------~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
..+.+... ....||+++.|+.++++.+.+.+
T Consensus 137 v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 137 ITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 01111111 11258888888888888877665
No 216
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.97 E-value=2.4e-09 Score=97.97 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=83.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|+++|.+|+|||||+++++.+... . .+..++.+.....+...+. ...+.++||||......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP-E-EYHPTVFENYVTDCRVDGK---------------PVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-c-ccCCcccceEEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 58999999999999999999833321 1 1112222222233333321 14588999999743321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecc-ccc----cCCchhhhhhhhhcccHHHHHH--------------
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG-KVD----PKSDVDVINLELVFSDLDQIEK-------------- 197 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~-~~d----p~~d~~~i~~el~~~~~~~i~~-------------- 197 (424)
.....++.+|++++|.|..+...+..+.. +.. ...+++++ ++.+++|....
T Consensus 65 -------~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~pii---lvgnK~Dl~~~~~~~~~~~~~~~~~ 134 (187)
T cd04129 65 -------LRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVI---LVGLKKDLRQDAVAKEEYRTQRFVP 134 (187)
T ss_pred -------cchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEeeChhhhhCcccccccccCCcCC
Confidence 11124588999999999876554322211 000 11233444 55677665331
Q ss_pred --HHHHHHhhcc---CCCcchhhHHHHHHHHHHHHHHH
Q 014450 198 --RMEKLKKGKA---KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 198 --~~~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
....+.+... ...+||+++.+++++++.+.+.+
T Consensus 135 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 135 IQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1111111111 11269999999999999887655
No 217
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.97 E-value=1e-09 Score=117.53 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=85.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCcccc--------C------CCCccccceEEEeecCCCcchhhccccccccccCce
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--------~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 122 (424)
.+|+|+|.+++|||||+++|+....+... + ..+.|+......+.+.. ......+
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~------------~~g~~~~ 71 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKA------------KDGETYV 71 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEc------------CCCCEEE
Confidence 48999999999999999999843222111 0 01333332222222210 0001257
Q ss_pred EEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce---eeeccccccCCchhhhhhhhhcccHHHHH---
Q 014450 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI---VHVNGKVDPKSDVDVINLELVFSDLDQIE--- 196 (424)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~---~~~~~~~dp~~d~~~i~~el~~~~~~~i~--- 196 (424)
+.||||||..++ .......++.||++++|+|+++.... .++..... .+++++ ++.|++|...
T Consensus 72 l~liDTPG~~dF-------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiI---iViNKiDl~~~~~ 139 (595)
T TIGR01393 72 LNLIDTPGHVDF-------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEII---PVINKIDLPSADP 139 (595)
T ss_pred EEEEECCCcHHH-------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEE---EEEECcCCCccCH
Confidence 999999999543 33556678899999999999875321 11100000 111122 2344444321
Q ss_pred -HHHHHHHhhccC-----CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 197 -KRMEKLKKGKAK-----DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 197 -~~~~~i~k~~~~-----~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.....+.+.... ..+||+++.|+.++++.+.+.+|.
T Consensus 140 ~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 140 ERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 111122222111 126999999999999999998874
No 218
>PLN03127 Elongation factor Tu; Provisional
Probab=98.97 E-value=5.6e-09 Score=108.30 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=61.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcC------CCcc---------ccCCCCccccceEEEeecCCCcchhhccccccccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~------~~~~---------~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
...++|+++|++|+|||||+++|++. .... ....+++|++.....+..++
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--------------- 123 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK--------------- 123 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC---------------
Confidence 44589999999999999999999832 1111 11125667765444443332
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.|+||||+. .+.......+..+|++++|||+.+.
T Consensus 124 --~~i~~iDtPGh~-------~f~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 124 --RHYAHVDCPGHA-------DYVKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred --eEEEEEECCCcc-------chHHHHHHHHhhCCEEEEEEECCCC
Confidence 689999999983 2444555666789999999999754
No 219
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.96 E-value=1.7e-09 Score=116.20 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=88.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCCC--ccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
-||++|.+|+|||||+|+|+|... .......+.|++.....+..++ +..+.||||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~----------------g~~i~~IDtPGh---- 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD----------------GRVLGFIDVPGH---- 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC----------------CcEEEEEECCCH----
Confidence 589999999999999999996432 2223345677665544444333 145899999997
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc---eeeeccccccCCchh-hhhhhhhcccHHHHHH-----HHHHHHhhc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVD-VINLELVFSDLDQIEK-----RMEKLKKGK 206 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~---~~~~~~~~dp~~d~~-~i~~el~~~~~~~i~~-----~~~~i~k~~ 206 (424)
+.+.......+..+|++++|||+.+... ..|+. ..... .++ .+ ++++++|.+++ ....+.+..
T Consensus 62 ---e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-il~~l-gi~~iI---VVlNKiDlv~~~~~~~v~~ei~~~l 133 (614)
T PRK10512 62 ---EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-ILQLT-GNPMLT---VALTKADRVDEARIAEVRRQVKAVL 133 (614)
T ss_pred ---HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-HHHHc-CCCeEE---EEEECCccCCHHHHHHHHHHHHHHH
Confidence 3455566777899999999999976421 11110 00000 000 01 23444443321 112222221
Q ss_pred c--------CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 207 A--------KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 207 ~--------~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
. .-.+||+++.|+++|++.+.+..+.
T Consensus 134 ~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 134 REYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1 1126999999999999999876643
No 220
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.96 E-value=1e-09 Score=104.21 Aligned_cols=150 Identities=11% Similarity=0.095 Sum_probs=84.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.++||||||+++++++ .......| |.-......+.+.+. ...+.||||||...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~-~F~~~y~p-Ti~~~~~~~i~~~~~---------------~v~l~iwDTaG~e~- 73 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKD-CYPETYVP-TVFENYTAGLETEEQ---------------RVELSLWDTSGSPY- 73 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcC-CCCCCcCC-ceeeeeEEEEEECCE---------------EEEEEEEeCCCchh-
Confidence 3579999999999999999999943 33222122 211111112333332 25699999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeee-cccccc----CCchhhhhhhhhcccHHHHHH------------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV-NGKVDP----KSDVDVINLELVFSDLDQIEK------------ 197 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~-~~~~dp----~~d~~~i~~el~~~~~~~i~~------------ 197 (424)
+.......++.||++++|+|+++..++..+ ..+... ..+.+++ ++.++.|.-+.
T Consensus 74 ------~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~pii---lVgNK~DL~~~~~~~~~l~~~~~ 144 (232)
T cd04174 74 ------YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRIL---LIGCKTDLRTDLSTLMELSNQKQ 144 (232)
T ss_pred ------hHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEE---EEEECcccccccchhhhhccccC
Confidence 222334467899999999999887654321 111110 1122333 44555553210
Q ss_pred ------HHHHHHhhccC---CCcchhhHH-HHHHHHHHHHHHHh
Q 014450 198 ------RMEKLKKGKAK---DSQSKLKED-AEKAALEKIQQALM 231 (424)
Q Consensus 198 ------~~~~i~k~~~~---~~~Sak~~~-~~~~ll~~i~~~L~ 231 (424)
....+.+.... ...||+++. ++.++++.+...+.
T Consensus 145 ~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 145 APISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred CcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 11112222111 126999987 79998888776653
No 221
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.96 E-value=6.4e-10 Score=102.10 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=46.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC--------CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEe
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG--------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~--------~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvD 127 (424)
..+++++|.||||||||+|+|.+.. .+.+++.|+||+++....+. ..+.++|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~D 186 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLYD 186 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEEe
Confidence 4689999999999999999999643 35788999999998766552 2379999
Q ss_pred CCCC
Q 014450 128 IAGL 131 (424)
Q Consensus 128 tpG~ 131 (424)
|||+
T Consensus 187 tPG~ 190 (190)
T cd01855 187 TPGI 190 (190)
T ss_pred CcCC
Confidence 9996
No 222
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.95 E-value=1.3e-09 Score=95.35 Aligned_cols=55 Identities=36% Similarity=0.513 Sum_probs=46.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
+++++|.||+|||||+|+|++...+.+++.+++|++...-.+ + ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T------------------PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C------------------CCEEEEECCCcC
Confidence 899999999999999999998887789999999987654332 2 248999999985
No 223
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.94 E-value=1.1e-09 Score=81.60 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=50.4
Q ss_pred EEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEE
Q 014450 341 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 420 (424)
Q Consensus 341 i~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~ 420 (424)
|.+|| .++..+. +++|+|+.|+|..||+++++.|+.|.|+| ++++.+|.++|||+|+|
T Consensus 1 I~v~l-pdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYL-PDGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEEE-TTSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEE
T ss_pred CEEEC-CCCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEE
Confidence 57888 3445444 99999999999999999999999999986 47999999999999998
Q ss_pred E
Q 014450 421 R 421 (424)
Q Consensus 421 ~ 421 (424)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 4
No 224
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.94 E-value=8.7e-09 Score=93.50 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=62.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
....+|.++|++|||||||++.|..+.... +..|...+...+...+ ..+.++|.+|-.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~~~~-----------------~~~~~~d~gG~~- 69 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIKYKG-----------------YSLTIWDLGGQE- 69 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEEETT-----------------EEEEEEEESSSG-
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceeeeCc-----------------EEEEEEeccccc-
Confidence 445899999999999999999999443222 2334455555566654 679999999962
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
.+...+...++.+|++++|||+++...
T Consensus 70 ------~~~~~w~~y~~~~~~iIfVvDssd~~~ 96 (175)
T PF00025_consen 70 ------SFRPLWKSYFQNADGIIFVVDSSDPER 96 (175)
T ss_dssp ------GGGGGGGGGHTTESEEEEEEETTGGGG
T ss_pred ------cccccceeeccccceeEEEEeccccee
Confidence 233355566789999999999987653
No 225
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.94 E-value=6.8e-10 Score=112.85 Aligned_cols=61 Identities=34% Similarity=0.397 Sum_probs=53.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+.||+||+|||||||++|+|.|.+.+.||..|+-|++.+.-.++ ..+.|.|+||++-+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--------------------~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--------------------PSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--------------------CCceecCCCCccccC
Confidence 489999999999999999999999999999999999987765543 348999999998665
Q ss_pred C
Q 014450 136 S 136 (424)
Q Consensus 136 ~ 136 (424)
.
T Consensus 374 f 374 (562)
T KOG1424|consen 374 F 374 (562)
T ss_pred C
Confidence 4
No 226
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.92 E-value=1.2e-09 Score=96.68 Aligned_cols=147 Identities=17% Similarity=0.247 Sum_probs=83.9
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||.++|.++||||||++++.++. ......|....+.....+...+. ...+.+||++|..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~----- 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGK---------------PVNLEIWDTSGQE----- 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTE---------------EEEEEEEEETTSG-----
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccc---------------ccccccccccccc-----
Confidence 79999999999999999999543 32222232223444445555442 2679999999962
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHhhc
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKKGK 206 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k~~ 206 (424)
.+.......++++|++++|.|..+..++..+..+..-+ .+.+++ ++.++.|..+. ....+.+..
T Consensus 60 --~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~ii---vvg~K~D~~~~~~v~~~~~~~~~~~~ 134 (162)
T PF00071_consen 60 --RFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPII---VVGNKSDLSDEREVSVEEAQEFAKEL 134 (162)
T ss_dssp --GGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEE---EEEETTTGGGGSSSCHHHHHHHHHHT
T ss_pred --cccccccccccccccccccccccccccccccccccccccccccccccce---eeeccccccccccchhhHHHHHHHHh
Confidence 22222234578899999999997766533322111100 112222 22233322210 111111111
Q ss_pred c--CCCcchhhHHHHHHHHHHHHHHH
Q 014450 207 A--KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 207 ~--~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
. ...+||+++.++.+++..+.+.+
T Consensus 135 ~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 135 GVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 12269999999999988887765
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=98.91 E-value=8.9e-09 Score=105.35 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCC------cccc---------CCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGK------AQAA---------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~------~~~s---------~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|++++|||||+++|++... .... -..++|++.....+..+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~----------------- 73 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETE----------------- 73 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCC-----------------
Confidence 358999999999999999999995211 0000 13455655433222222
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||. +.+.......+..+|++++|+|+.+.
T Consensus 74 ~~~i~~iDtPGh-------~~f~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 74 KRHYAHVDCPGH-------ADYVKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred CcEEEEEECCCH-------HHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 267899999996 24445667777899999999999764
No 228
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.91 E-value=6.8e-09 Score=110.75 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCC-ccccceEEEeecCCCcchhhcccc-ccc--cccCceEEEEeCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLS-KSQ--KAVPASVEFVDIAGL 131 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~-tT~~~~~~~~~~~~~~~d~l~~~~-~~~--~~~~~~i~lvDtpG~ 131 (424)
++-|+++|++|+|||||+|+|++... ++..|+ +|.+.....++.+. ........ ... +....++.||||||.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~--~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDV--IEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeecc--ccccccccccccccccccCcEEEEECCCc
Confidence 57899999999999999999995533 223333 45432222222111 00000000 000 011134899999997
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.. +.......++.+|++++|+|+++
T Consensus 80 e~-------f~~l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 80 EA-------FTNLRKRGGALADLAILIVDINE 104 (590)
T ss_pred Hh-------HHHHHHHHHhhCCEEEEEEECCc
Confidence 32 22233445689999999999976
No 229
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.90 E-value=7.6e-10 Score=94.51 Aligned_cols=82 Identities=21% Similarity=0.230 Sum_probs=53.3
Q ss_pred EEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcccc
Q 014450 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (424)
Q Consensus 61 ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~ 140 (424)
++|.||+|||||+|+|++.... ......+..+........+.. ...+.++||||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~---- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGK---------------KVKLQIWDTAGQERFRS---- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCE---------------EEEEEEEecCChHHHHh----
Confidence 5899999999999999955442 122222223333333332211 26799999999853322
Q ss_pred hhhhhhhhhhccceEEEEeecCCCC
Q 014450 141 LGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
.....++.+|++++|+|++.+.
T Consensus 61 ---~~~~~~~~~~~~i~v~d~~~~~ 82 (157)
T cd00882 61 ---LRRLYYRGADGIILVYDVTDRE 82 (157)
T ss_pred ---HHHHHhcCCCEEEEEEECcCHH
Confidence 2355678899999999998764
No 230
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.90 E-value=3.6e-09 Score=94.36 Aligned_cols=139 Identities=19% Similarity=0.094 Sum_probs=79.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+++++.+.-.. .++ +|.......+.+++. ...+.+|||+|.-.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~-~~~~~~~~~i~~~~~---------------~~~l~i~D~~g~~~--- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LES-PEGGRFKKEVLVDGQ---------------SHLLLIRDEGGAPD--- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCC-CCccceEEEEEECCE---------------EEEEEEEECCCCCc---
Confidence 479999999999999999987332211 122 122222233444431 25589999999831
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHH---H-----HHHHH
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIE---K-----RMEKL 202 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~---~-----~~~~i 202 (424)
....+.+|++++|+|.++..++..+..+. ....+++++ ++.++.|... + ....+
T Consensus 60 ---------~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~pii---lvgnK~Dl~~~~~~~v~~~~~~~~ 127 (158)
T cd04103 60 ---------AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLI---LVGTQDAISESNPRVIDDARARQL 127 (158)
T ss_pred ---------hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEeeHHHhhhcCCcccCHHHHHHH
Confidence 12346799999999998876543322111 111223333 4455544321 0 11112
Q ss_pred Hhhcc---CCCcchhhHHHHHHHHHHHHH
Q 014450 203 KKGKA---KDSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 203 ~k~~~---~~~~Sak~~~~~~~ll~~i~~ 228 (424)
.+... ....||+++.|++++++.+.+
T Consensus 128 ~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 128 CADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred HHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 21111 112699999999999888764
No 231
>CHL00071 tufA elongation factor Tu
Probab=98.89 E-value=3.3e-09 Score=109.01 Aligned_cols=86 Identities=19% Similarity=0.179 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccc---------------cCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQA---------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~---------------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|++|+|||||+|+|++...... .-.+++|++.....+..+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~----------------- 73 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETE----------------- 73 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccC-----------------
Confidence 348999999999999999999995422111 111455555433333222
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||.. .+.......+..+|++++|+|+...
T Consensus 74 ~~~~~~iDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 74 NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred CeEEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECCCC
Confidence 3679999999962 4555667778999999999999754
No 232
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.7e-09 Score=90.53 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=98.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
-++|++||..++|||.|+...| +...+++.-+....+.....+.++++. ..+++|||+|.
T Consensus 7 lfkivlvgnagvgktclvrrft-qglfppgqgatigvdfmiktvev~gek---------------iklqiwdtagq---- 66 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEVNGEK---------------IKLQIWDTAGQ---- 66 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhh-ccCCCCCCCceeeeeEEEEEEEECCeE---------------EEEEEeeccch----
Confidence 4799999999999999999999 777777666666667777788887754 67999999998
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhh-----hhhhhcccHHHHHHHH--HHHHh-hcc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVI-----NLELVFSDLDQIEKRM--EKLKK-GKA 207 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i-----~~el~~~~~~~i~~~~--~~i~k-~~~ 207 (424)
+.+..-+.+..|.|+++++|.|.+-.+++.-+..+ +++++.. -+-|+.|++|.-+++- ..+.. ...
T Consensus 67 ---erfrsitqsyyrsahalilvydiscqpsfdclpew---lreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~ 140 (213)
T KOG0095|consen 67 ---ERFRSITQSYYRSAHALILVYDISCQPSFDCLPEW---LREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSE 140 (213)
T ss_pred ---HHHHHHHHHHhhhcceEEEEEecccCcchhhhHHH---HHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHH
Confidence 44444667888999999999999877654221111 1111110 0114456655444421 11111 111
Q ss_pred C-----CCcchhhHHHHHHHHHHHHHHH
Q 014450 208 K-----DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 208 ~-----~~~Sak~~~~~~~ll~~i~~~L 230 (424)
. -..||++..|++.|+..+.-.|
T Consensus 141 ~qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 141 AQDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 1 1148888888888877776555
No 233
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.89 E-value=1.6e-08 Score=95.39 Aligned_cols=87 Identities=13% Similarity=0.149 Sum_probs=57.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|++||.+|||||||+++++++. ... .+..|..+.....+.+++. ...+.||||+|....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~-~y~pTi~~~~~~~~~~~~~---------------~v~L~iwDt~G~e~~-- 62 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPG-SYVPTVFENYTASFEIDKR---------------RIELNMWDTSGSSYY-- 62 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCC-ccCCccccceEEEEEECCE---------------EEEEEEEeCCCcHHH--
Confidence 689999999999999999999433 222 2222222222223344332 256899999997322
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
.......++.+|++|+|+|.++...+
T Consensus 63 -----~~l~~~~~~~~d~illvfdis~~~Sf 88 (222)
T cd04173 63 -----DNVRPLAYPDSDAVLICFDISRPETL 88 (222)
T ss_pred -----HHHhHHhccCCCEEEEEEECCCHHHH
Confidence 12223357899999999999887653
No 234
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.88 E-value=7.1e-09 Score=96.94 Aligned_cols=155 Identities=13% Similarity=0.026 Sum_probs=82.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeec--CCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV--PDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~--~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...+|+++|.+|||||||++++..+. .. +...+|.........+ .+ ....+.+|||||..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~---------------~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE-FE--KKYIPTLGVEVHPLKFYTNC---------------GPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC-CC--CCCCCccceEEEEEEEEECC---------------eEEEEEEEECCCch
Confidence 45899999999999999998665232 11 1122333332222221 11 12578999999963
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc----cCCchhhhhhhhhcccHHHHHH-----HHHHHH
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD----PKSDVDVINLELVFSDLDQIEK-----RMEKLK 203 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d----p~~d~~~i~~el~~~~~~~i~~-----~~~~i~ 203 (424)
... ......++.+|++++|+|.++...+..+..+.. ...+++++ ++.++.|..++ ......
T Consensus 70 ~~~-------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~---lv~nK~Dl~~~~~~~~~~~~~~ 139 (215)
T PTZ00132 70 KFG-------GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIV---LVGNKVDVKDRQVKARQITFHR 139 (215)
T ss_pred hhh-------hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE---EEEECccCccccCCHHHHHHHH
Confidence 221 122344678999999999986543211111000 00111111 22333332111 111111
Q ss_pred hh-ccCCCcchhhHHHHHHHHHHHHHHHhCCCCcc
Q 014450 204 KG-KAKDSQSKLKEDAEKAALEKIQQALMDGKPAR 237 (424)
Q Consensus 204 k~-~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~ 237 (424)
.. ......||+++.++.+.+..+.+.+...+.+.
T Consensus 140 ~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~~~p~~~ 174 (215)
T PTZ00132 140 KKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLV 174 (215)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHHHHHhhcccce
Confidence 11 01123689999999998888887776655543
No 235
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.88 E-value=3.5e-09 Score=95.70 Aligned_cols=59 Identities=32% Similarity=0.433 Sum_probs=48.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++++++|.||+|||||+|+|++...+.+++.|+||++...-.+. ..+.++||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~--------------------~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS--------------------PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec--------------------CCEEEEECCCCC
Confidence 34579999999999999999999977777889999999876553331 238999999983
No 236
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.87 E-value=1.2e-08 Score=88.98 Aligned_cols=77 Identities=17% Similarity=0.142 Sum_probs=53.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|.+||.++||||||+++|.|.... ..-|.. +.+. =.+|||||=.-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-----~~KTq~-----i~~~--------------------~~~IDTPGEyiE-- 49 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-----YKKTQA-----IEYY--------------------DNTIDTPGEYIE-- 49 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-----cCccce-----eEec--------------------ccEEECChhhee--
Confidence 47999999999999999999954321 111110 1111 245999995321
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
...+.+..+....+||+|++|.|++++..
T Consensus 50 -~~~~y~aLi~ta~dad~V~ll~dat~~~~ 78 (143)
T PF10662_consen 50 -NPRFYHALIVTAQDADVVLLLQDATEPRS 78 (143)
T ss_pred -CHHHHHHHHHHHhhCCEEEEEecCCCCCc
Confidence 23455677777889999999999988654
No 237
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.87 E-value=2.3e-09 Score=92.28 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=64.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+.+.+||.-|+|||||.|.+..+.. +.+...|+-.+...++.++ ..+.++|.||...+.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~---~edmiptvGfnmrk~tkgn-----------------vtiklwD~gGq~rfr 79 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPRFR 79 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccc---hhhhcccccceeEEeccCc-----------------eEEEEEecCCCccHH
Confidence 57899999999999999999983232 2233445566666666665 779999999985443
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
..+-...|.+|+|+++||++++..
T Consensus 80 -------smWerycR~v~aivY~VDaad~~k 103 (186)
T KOG0075|consen 80 -------SMWERYCRGVSAIVYVVDAADPDK 103 (186)
T ss_pred -------HHHHHHhhcCcEEEEEeecCCccc
Confidence 366677899999999999998654
No 238
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.86 E-value=2.3e-09 Score=99.62 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=81.6
Q ss_pred EecCCCCchHHHHHhhcCCCccccCCCCcccc--ceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCccc
Q 014450 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIE--PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (424)
Q Consensus 62 vG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~--~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (424)
||.+|||||||+++++.+ .... .+ ..|.. .....+.+.+. ...+.||||||....
T Consensus 1 vG~~~vGKTsLi~r~~~~-~f~~-~~-~~Tig~~~~~~~~~~~~~---------------~~~l~iwDt~G~e~~----- 57 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTG-EFEK-KY-VATLGVEVHPLVFHTNRG---------------PIRFNVWDTAGQEKF----- 57 (200)
T ss_pred CCCCCCCHHHHHHHHhcC-CCCC-CC-CCceeEEEEEEEEEECCE---------------EEEEEEEECCCchhh-----
Confidence 699999999999999943 2221 12 22322 22222222221 257999999998432
Q ss_pred chhhhhhhhhhccceEEEEeecCCCCceeeecccccc----CCchhhhhhhhhcccHHHHHHHH--H--HHHhhcc--CC
Q 014450 140 GLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP----KSDVDVINLELVFSDLDQIEKRM--E--KLKKGKA--KD 209 (424)
Q Consensus 140 ~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp----~~d~~~i~~el~~~~~~~i~~~~--~--~i~k~~~--~~ 209 (424)
.......++.+|++++|+|+++..++..+..+..- ..+++++ ++.++.|...+.. . .+.+... ..
T Consensus 58 --~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~pii---lvgNK~Dl~~~~v~~~~~~~~~~~~~~~~ 132 (200)
T smart00176 58 --GGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIV---LCGNKVDVKDRKVKAKSITFHRKKNLQYY 132 (200)
T ss_pred --hhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEE---EEEECcccccccCCHHHHHHHHHcCCEEE
Confidence 22334568899999999999887654322211110 1223333 4556665432210 0 1111111 12
Q ss_pred CcchhhHHHHHHHHHHHHHHHhC
Q 014450 210 SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 210 ~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..||+++.++.++++.+.+.+..
T Consensus 133 e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 133 DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 26999999999999998877643
No 239
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=98.85 E-value=5e-09 Score=91.54 Aligned_cols=153 Identities=17% Similarity=0.230 Sum_probs=97.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..+||.|||.+|||||||+-+.+ .+......-.....|.....+.+++.+ ..+.+|||+|.-+
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv-~~~fd~~~~~tIGvDFkvk~m~vdg~~---------------~KlaiWDTAGqEr- 72 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFV-SNTFDDLHPTTIGVDFKVKVMQVDGKR---------------LKLAIWDTAGQER- 72 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHH-hcccCccCCceeeeeEEEEEEEEcCce---------------EEEEEEeccchHh-
Confidence 35899999999999999999999 444332222223455666667777755 6799999999843
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHHHH-HH---H--
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEKRM-EK---L-- 202 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~~~-~~---i-- 202 (424)
+..-+-+..|.|-.+++|.|....+.+..++.+...+ .|+-.+ ++.|++|.-..|. .+ +
T Consensus 73 ------FRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikm---lVgNKiDkes~R~V~reEG~kf 143 (209)
T KOG0080|consen 73 ------FRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKM---LVGNKIDKESERVVDREEGLKF 143 (209)
T ss_pred ------hhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHh---hhcccccchhcccccHHHHHHH
Confidence 3335567789999999999998876654433322111 222222 5677776442211 11 1
Q ss_pred HhhccC--CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 203 KKGKAK--DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 203 ~k~~~~--~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
.+..+. ..-|||+..++...++.+.+..-+.
T Consensus 144 Ar~h~~LFiE~SAkt~~~V~~~FeelveKIi~t 176 (209)
T KOG0080|consen 144 ARKHRCLFIECSAKTRENVQCCFEELVEKIIET 176 (209)
T ss_pred HHhhCcEEEEcchhhhccHHHHHHHHHHHHhcC
Confidence 111111 1148999999998888877666444
No 240
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.83 E-value=5.4e-09 Score=112.13 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=86.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcccc--------C------CCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--------~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
..+|+|+|..++|||||+++|+........ + ..+.|.......+.+. +......
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~------------~~dg~~~ 74 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYK------------AKDGETY 74 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEE------------ccCCCcE
Confidence 358999999999999999999842211110 0 1133333222222221 0001136
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCcee---eeccccccCCchhhhhhhhhcccHHHHHH-
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIV---HVNGKVDPKSDVDVINLELVFSDLDQIEK- 197 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~---~~~~~~dp~~d~~~i~~el~~~~~~~i~~- 197 (424)
.+.||||||..++. ..+...++.||++++|+|+++..... ++..... .+++.+ +++|++|....
T Consensus 75 ~lnLiDTPGh~dF~-------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--~~lpiI---vViNKiDl~~a~ 142 (600)
T PRK05433 75 ILNLIDTPGHVDFS-------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--NDLEII---PVLNKIDLPAAD 142 (600)
T ss_pred EEEEEECCCcHHHH-------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEE---EEEECCCCCccc
Confidence 79999999996532 34556788999999999998753210 0000000 011112 23444443211
Q ss_pred ---HHHHHHhhccC-----CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 ---RMEKLKKGKAK-----DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 ---~~~~i~k~~~~-----~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
....+...... -.+||+++.|+.++++.+.+.+|.
T Consensus 143 ~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 143 PERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred HHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 11222222111 136999999999999999998874
No 241
>PRK12740 elongation factor G; Reviewed
Probab=98.81 E-value=6.6e-09 Score=113.31 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=35.9
Q ss_pred HhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecC
Q 014450 300 QVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 347 (424)
Q Consensus 300 ~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g 347 (424)
.+-+.+++.+++..++||+...++...+...++.+...-.++|+|...
T Consensus 196 ~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~~gS 243 (668)
T PRK12740 196 ELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVFCGS 243 (668)
T ss_pred HHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 344556777888889999887777777777777777777888888644
No 242
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.80 E-value=1.1e-08 Score=96.33 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=57.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCcc------------------------------ccCCCCccccceEEEeecCCCcch
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDPRLH 107 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~------------------------------~s~~p~tT~~~~~~~~~~~~~~~d 107 (424)
+|+++|.+++|||||+.+|+....+. .....++|++.....+...+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~---- 76 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK---- 76 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC----
Confidence 58999999999999999997321110 00123455555555554433
Q ss_pred hhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
..+.|+||||..+ +...+...++.+|++++|||+++
T Consensus 77 -------------~~i~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 77 -------------YRFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred -------------eEEEEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCC
Confidence 6799999999732 33456677889999999999964
No 243
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.79 E-value=1.6e-08 Score=94.13 Aligned_cols=83 Identities=23% Similarity=0.363 Sum_probs=55.4
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|.++|.+|||||||+++|++..... .+ ++..++.+....... ..+..+.+|||||..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~--~s~~~~~~~~~~~~~-------------~~~~~~~l~D~pG~~---- 59 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TV--TSIEPNVATFILNSE-------------GKGKKFRLVDVPGHP---- 59 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--cc--CcEeecceEEEeecC-------------CCCceEEEEECCCCH----
Confidence 368999999999999999999443211 11 222344444332210 012569999999973
Q ss_pred cccchhhhhhhhhhcc-ceEEEEeecCC
Q 014450 137 QGEGLGNKFLSHIREV-DSILQVVRCFE 163 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~a-D~il~Vvda~~ 163 (424)
.+...+...++.+ +++++|+|+++
T Consensus 60 ---~~~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 60 ---KLRDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred ---HHHHHHHHHHhccCCEEEEEEECcc
Confidence 3445666778888 99999999853
No 244
>PRK13796 GTPase YqeH; Provisional
Probab=98.79 E-value=5.7e-09 Score=105.63 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=45.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC-----CCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~-----~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
..++.+||.||||||||+|+|.+. ..+.+|+.|+||++...-.+ + ....++||||
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~------------------~~~~l~DTPG 219 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--D------------------DGSFLYDTPG 219 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--C------------------CCcEEEECCC
Confidence 358999999999999999999843 23458999999998654432 2 2258999999
Q ss_pred CCCC
Q 014450 131 LVKG 134 (424)
Q Consensus 131 ~~~~ 134 (424)
+...
T Consensus 220 i~~~ 223 (365)
T PRK13796 220 IIHR 223 (365)
T ss_pred cccc
Confidence 9743
No 245
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.79 E-value=3.6e-09 Score=104.32 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=67.5
Q ss_pred hhcccccCCcchhhhhhhhh-hhccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcch
Q 014450 29 NANLIGVLGITTTSSRRRFS-SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH 107 (424)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d 107 (424)
.+.+...+|.+.+.+..|+- +-......+.||+||+||+||||++|+|-...+|.+++.|+.|.-=+. +.+
T Consensus 279 HAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQY--ItL------ 350 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQY--ITL------ 350 (572)
T ss_pred ehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHH--HHH------
Confidence 35677889999998876653 334445568999999999999999999998999999999998842110 111
Q ss_pred hhccccccccccCceEEEEeCCCCCCCCC
Q 014450 108 VLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
-..|.|||+||++.+..
T Consensus 351 ------------mkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 351 ------------MKRIFLIDCPGVVYPSS 367 (572)
T ss_pred ------------HhceeEecCCCccCCCC
Confidence 14599999999997764
No 246
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.78 E-value=1.2e-08 Score=85.73 Aligned_cols=82 Identities=18% Similarity=0.268 Sum_probs=49.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCc---cccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~---~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
||.++|.+|||||||+++|.+.... ........|.... .......+ ..+.++|++|....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------------~~~~~~d~~g~~~~ 63 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVD--VIVVDGDR---------------QSLQFWDFGGQEEF 63 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEE--EEEETTEE---------------EEEEEEEESSSHCH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEE--EEEecCCc---------------eEEEEEecCcccee
Confidence 6899999999999999999966554 1111122221111 12222111 34889999998322
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
. ......+..+|++++|+|+++
T Consensus 64 ~-------~~~~~~~~~~d~~ilv~D~s~ 85 (119)
T PF08477_consen 64 Y-------SQHQFFLKKADAVILVYDLSD 85 (119)
T ss_dssp H-------CTSHHHHHHSCEEEEEEECCG
T ss_pred c-------ccccchhhcCcEEEEEEcCCC
Confidence 1 111222788999999999854
No 247
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.78 E-value=1.6e-08 Score=95.63 Aligned_cols=92 Identities=15% Similarity=0.009 Sum_probs=60.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC-Ccc-ccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG-KAQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~-~~~-~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
-.-|+|+|.|++|||||+|.|+|.. ... ....+.||+.......+... ....+++++||||+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~--------------~~~~~v~~lDteG~~~ 72 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL--------------GKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC--------------CCcceEEEEecCCcCc
Confidence 3579999999999999999999661 444 34457788755555444321 0126799999999964
Q ss_pred CCCcccchhhhhhhhhhc--cceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIRE--VDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~--aD~il~Vvda~ 162 (424)
... +.......+.++.. +|++++.++..
T Consensus 73 ~~~-~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 73 RER-GEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred ccc-CchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 332 11122333444444 89999988863
No 248
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.78 E-value=4e-09 Score=111.41 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCC--ccccCC------CCccccceEEEeecCCCcchhhccccccccccCceEEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQAANF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~------p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lv 126 (424)
...+|+|+|++|+|||||+++|+-... ...+.. ..++.|... ..-.|-..+.....+..+.+.++.|+
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~----~E~~rgisi~~~~~~~~~~~~~inli 85 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWME----MEKQRGISITTSVMQFPYRDCLVNLL 85 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCH----HHHhcCCcEEEEEEEEeeCCeEEEEE
Confidence 356999999999999999999962221 111110 011111100 00000000001111122335789999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
||||..+ +.......++.+|++++|+|+++
T Consensus 86 DTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 86 DTPGHED-------FSEDTYRTLTAVDNCLMVIDAAK 115 (527)
T ss_pred ECCChhh-------HHHHHHHHHHhCCEEEEEEECCC
Confidence 9999842 33466778899999999999864
No 249
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.77 E-value=1e-08 Score=94.80 Aligned_cols=88 Identities=18% Similarity=0.098 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCCchHHHH-HhhcCCCcc----ccCCCCccc--cceEEEe--------ecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFN-AVVENGKAQ----AANFPFCTI--EPNVGIV--------AVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~N-aL~g~~~~~----~s~~p~tT~--~~~~~~~--------~~~~~~~d~l~~~~~~~~~~~ 120 (424)
.+||+++|.+|||||||++ .+. +.... ...+..|.- +...... .+++ ..
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~-~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~---------------~~ 65 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARAC-NKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDG---------------VS 65 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHh-CCCcccccCccccCCceecccceeEEeeeccccceeeCC---------------EE
Confidence 3699999999999999996 555 32211 111111110 1100000 1122 12
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCcee
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIV 168 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~ 168 (424)
..+.+|||||.... + ....+++||++++|.|.++..++.
T Consensus 66 v~l~iwDTaG~~~~------~---~~~~~~~ad~iilv~d~t~~~Sf~ 104 (195)
T cd01873 66 VSLRLWDTFGDHDK------D---RRFAYGRSDVVLLCFSIASPNSLR 104 (195)
T ss_pred EEEEEEeCCCChhh------h---hcccCCCCCEEEEEEECCChhHHH
Confidence 67999999998421 1 112578999999999998876543
No 250
>PRK10218 GTP-binding protein; Provisional
Probab=98.76 E-value=4.1e-08 Score=105.13 Aligned_cols=85 Identities=20% Similarity=0.208 Sum_probs=58.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC---------------CCCccccceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~---------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+|+|.+++|||||+++|+......... ..+.|+......+.+. .
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~-----------------~ 67 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWN-----------------D 67 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecC-----------------C
Confidence 4689999999999999999999532221111 1223333333333332 3
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..+.+|||||..++. ..+...++.+|++++|+|+++.
T Consensus 68 ~~inliDTPG~~df~-------~~v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 68 YRINIVDTPGHADFG-------GEVERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred EEEEEEECCCcchhH-------HHHHHHHHhCCEEEEEEecccC
Confidence 789999999985443 3556678999999999999764
No 251
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=7.7e-09 Score=104.53 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=47.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC-----CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~-----~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
..+|.+||.||||||||+|+|++.. .+.+|++|+||++.+...+ + ..+.++||||
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--~------------------~~~~l~DtPG 213 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--D------------------DGHSLYDTPG 213 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe--C------------------CCCEEEECCC
Confidence 3689999999999999999999632 3678999999988765433 2 2368999999
Q ss_pred CCCC
Q 014450 131 LVKG 134 (424)
Q Consensus 131 ~~~~ 134 (424)
+...
T Consensus 214 ~~~~ 217 (360)
T TIGR03597 214 IINS 217 (360)
T ss_pred CCCh
Confidence 9754
No 252
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.75 E-value=1.3e-08 Score=104.55 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=83.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC--ccccCCCCccccceEEEeecC-CCcchhhcccccccc---------ccCceE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQK---------AVPASV 123 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~p~tT~~~~~~~~~~~-~~~~d~l~~~~~~~~---------~~~~~i 123 (424)
.++|+++|.+++|||||+++|++... ....-..+.|.+......... .+.... ...+.... .....+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDG-PECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCc-cccccccccccccccccccccEE
Confidence 57899999999999999999984311 000001122322111111000 000000 00000000 012569
Q ss_pred EEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC----ceeeeccccccCCchhhhhhhhhcccHHHHHH--
Q 014450 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----DIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-- 197 (424)
Q Consensus 124 ~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~----~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-- 197 (424)
.|+||||. +.+...+...+..+|++++|+|+++.. ...++.- .....-..++ +..+++|.+..
T Consensus 83 ~liDtPGh-------~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~-l~~~gi~~iI---VvvNK~Dl~~~~~ 151 (406)
T TIGR03680 83 SFVDAPGH-------ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMA-LEIIGIKNIV---IVQNKIDLVSKEK 151 (406)
T ss_pred EEEECCCH-------HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHH-HHHcCCCeEE---EEEEccccCCHHH
Confidence 99999996 345556777788899999999998642 1111100 0000000011 22455544321
Q ss_pred ---HHHHHHhhcc--------CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 198 ---RMEKLKKGKA--------KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 198 ---~~~~i~k~~~--------~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
....+..... .-.+||+++.+++++++.+...++
T Consensus 152 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 1122222111 112699999999999999988775
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.75 E-value=1.5e-08 Score=109.69 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=64.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcccc----------CCCCccccceEEEeecCCC---cchh--hcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAA----------NFPFCTIEPNVGIVAVPDP---RLHV--LSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s----------~~p~tT~~~~~~~~~~~~~---~~d~--l~~~~~~~~~~ 119 (424)
..++|+|+|+||+|||||+|+|+....+.++ ..+++|+++..-.+..+.. +-.. +...+....+.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3478999999999999999999965555442 2466666544322211110 0000 11111222233
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||.. .+.......+..+|++++|||+...
T Consensus 103 ~~~~~liDtPG~~-------~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 103 KRKFIVADTPGHE-------QYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred CceEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECCCC
Confidence 4689999999962 3334455668899999999999654
No 254
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.75 E-value=8.8e-09 Score=95.83 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.+|.++|.++||||||+++++++ .......|..+.+.....+.+++.. +. -....+.+|||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~-~f~~~~~~Tig~~~~~k~~~~~~~~---------~~-~~~~~l~IwDtaG~e~--- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKN-QVLGRPSWTVGCSVDVKHHTYKEGT---------PE-EKTFFVELWDVGGSES--- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-CCCCCCCcceeeeEEEEEEEEcCCC---------CC-CcEEEEEEEecCCchh---
Confidence 48999999999999999999944 3322222222111222223332100 00 0125689999999732
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
+.......++.+|++++|.|.++..++
T Consensus 67 ----~~~l~~~~yr~ad~iIlVyDvtn~~Sf 93 (202)
T cd04102 67 ----VKSTRAVFYNQVNGIILVHDLTNRKSS 93 (202)
T ss_pred ----HHHHHHHHhCcCCEEEEEEECcChHHH
Confidence 222334457899999999999876543
No 255
>PRK00049 elongation factor Tu; Reviewed
Probab=98.74 E-value=2.1e-08 Score=102.64 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC------Cccc---------cCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG------KAQA---------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~------~~~~---------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|++++|||||+++|++.. .+.. .-..++|++.....+...
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------- 73 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------- 73 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------------
Confidence 35799999999999999999999521 0000 013455655443333222
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||.. .+.......+..||++++|+|+...
T Consensus 74 ~~~i~~iDtPG~~-------~f~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 74 KRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred CeEEEEEECCCHH-------HHHHHHHhhhccCCEEEEEEECCCC
Confidence 3679999999973 3455666778899999999999764
No 256
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.74 E-value=6.6e-08 Score=103.55 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=57.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccC---------------CCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~---------------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
.+|+|+|+.++|||||+++|+......... .-+.|+......+.+ ...
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-----------------~~~ 64 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-----------------NGT 64 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-----------------CCE
Confidence 379999999999999999998422211110 112333333333333 247
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+.||||||..+ +.......++.+|++++|||+++.
T Consensus 65 kinlIDTPGh~D-------F~~ev~~~l~~aD~alLVVDa~~G 100 (594)
T TIGR01394 65 KINIVDTPGHAD-------FGGEVERVLGMVDGVLLLVDASEG 100 (594)
T ss_pred EEEEEECCCHHH-------HHHHHHHHHHhCCEEEEEEeCCCC
Confidence 899999999843 344667778999999999999764
No 257
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=3e-07 Score=82.49 Aligned_cols=151 Identities=19% Similarity=0.139 Sum_probs=97.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..|+.++|-.+||||.|+-..+ .+...+-.-....++.-...+.+++. +..+++|||+|.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~-~krF~~~hd~TiGvefg~r~~~id~k---------------~IKlqiwDtaGq---- 65 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT-DKRFQPVHDLTIGVEFGARMVTIDGK---------------QIKLQIWDTAGQ---- 65 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh-ccCccccccceeeeeeceeEEEEcCc---------------eEEEEEEecCCc----
Confidence 4799999999999999999999 55443322222233333344555552 367999999998
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak~ 215 (424)
+.+..-..+..+.|-.+|+|.|....+.+.|
T Consensus 66 ---e~frsv~~syYr~a~GalLVydit~r~sF~h---------------------------------------------- 96 (216)
T KOG0098|consen 66 ---ESFRSVTRSYYRGAAGALLVYDITRRESFNH---------------------------------------------- 96 (216)
T ss_pred ---HHHHHHHHHHhccCcceEEEEEccchhhHHH----------------------------------------------
Confidence 3444456677899999999999743222111
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014450 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (424)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~v 295 (424)
+..-|+.++++.. ..--++...|+.|-+ .. .+...++-+.+++++|..++
T Consensus 97 ---L~~wL~D~rq~~~------------------------~NmvImLiGNKsDL~--~r-R~Vs~EEGeaFA~ehgLifm 146 (216)
T KOG0098|consen 97 ---LTSWLEDARQHSN------------------------ENMVIMLIGNKSDLE--AR-REVSKEEGEAFAREHGLIFM 146 (216)
T ss_pred ---HHHHHHHHHHhcC------------------------CCcEEEEEcchhhhh--cc-ccccHHHHHHHHHHcCceee
Confidence 1111222222220 122356688888532 21 24456788899999999999
Q ss_pred EecHHhHHHH
Q 014450 296 TISAQVEAEL 305 (424)
Q Consensus 296 ~~sa~~e~~l 305 (424)
.+||+..+.+
T Consensus 147 ETSakt~~~V 156 (216)
T KOG0098|consen 147 ETSAKTAENV 156 (216)
T ss_pred hhhhhhhhhH
Confidence 9999998776
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.73 E-value=9.3e-09 Score=105.75 Aligned_cols=167 Identities=21% Similarity=0.212 Sum_probs=88.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC--CccccCCCCccccceEEEeecCC-Ccchhhcccccccc---------ccCc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPD-PRLHVLSGLSKSQK---------AVPA 121 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~--~~~~s~~p~tT~~~~~~~~~~~~-~~~d~l~~~~~~~~---------~~~~ 121 (424)
...++|+++|..++|||||+.+|++.. ...-.-..+.|++...+...... ..+ .....+.... ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDC-EEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEeccccccccccccc-Ccccccccccccccccccccccc
Confidence 345899999999999999999998421 11111122444443222211100 000 0000010000 0125
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC-c---eeeeccccccCCchhhhhhhhhcccHHHHHH
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-D---IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~-~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~ 197 (424)
++.|+||||. +.+...++..+..+|++++|+|+.+.. . ..++.. .........+ +++|++|.+..
T Consensus 86 ~i~liDtPG~-------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~~i~~ii---VVlNK~Dl~~~ 154 (411)
T PRK04000 86 RVSFVDAPGH-------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDIIGIKNIV---IVQNKIDLVSK 154 (411)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHcCCCcEE---EEEEeeccccc
Confidence 7999999995 345567778888899999999998642 1 111000 0000000011 23455554321
Q ss_pred -----HHHHHHhhcc-----C---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 -----RMEKLKKGKA-----K---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 -----~~~~i~k~~~-----~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
....+..... . -.+||+++.++.+|++.+.+.++.
T Consensus 155 ~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 155 ERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred hhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 1122222211 1 126999999999999999887753
No 259
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.71 E-value=1.1e-07 Score=101.87 Aligned_cols=98 Identities=23% Similarity=0.178 Sum_probs=54.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCC-CccccceEEEeecCCCcchhhcc-ccc--cccccCceEEEEeCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSG-LSK--SQKAVPASVEFVDIAG 130 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-~tT~~~~~~~~~~~~~~~d~l~~-~~~--~~~~~~~~i~lvDtpG 130 (424)
+++.|+++|++|+|||||+|+|++...+ +..+ ..|.+ .|....+....+.... ... +.++.-..+.||||||
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~--ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG 80 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQH--IGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPG 80 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEe--eceeeccccccccccceeccccccccccCCEEEEECCC
Confidence 4578999999999999999999954322 2222 22222 1211111100000000 000 0011011378999999
Q ss_pred CCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+ .......++.+|++++|+|+++
T Consensus 81 ~e~f-------~~~~~~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 81 HEAF-------TNLRKRGGALADIAILVVDINE 106 (586)
T ss_pred hHHH-------HHHHHHhHhhCCEEEEEEECCC
Confidence 8433 2233345678999999999986
No 260
>PLN03126 Elongation factor Tu; Provisional
Probab=98.69 E-value=4.7e-08 Score=102.08 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCcccc---------------CCCCccccceEEEeecCCCcchhhccccccccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s---------------~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
...++|+++|++|+|||||+++|++......+ ...+.|++.....+...
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~---------------- 142 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETE---------------- 142 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecC----------------
Confidence 34579999999999999999999943222111 11233333222222222
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..++.|+||||.. .+.......+..+|++++|||+.+.
T Consensus 143 -~~~i~liDtPGh~-------~f~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 143 -NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred -CcEEEEEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3679999999973 3445667778899999999999764
No 261
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.69 E-value=1.4e-08 Score=100.72 Aligned_cols=64 Identities=28% Similarity=0.461 Sum_probs=53.2
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
.....+|||||+||+||||++|+|.....|.+++.|+.|+.-+.-.. ...|.|+|.||++
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L--------------------dk~i~llDsPgiv 308 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL--------------------DKKIRLLDSPGIV 308 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec--------------------cCCceeccCCcee
Confidence 45578999999999999999999998889999999999976543332 1569999999998
Q ss_pred CCCC
Q 014450 133 KGAS 136 (424)
Q Consensus 133 ~~~~ 136 (424)
....
T Consensus 309 ~~~~ 312 (435)
T KOG2484|consen 309 PPSI 312 (435)
T ss_pred ecCC
Confidence 6554
No 262
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.69 E-value=4.7e-08 Score=100.10 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=59.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC------CCccc---------cCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN------GKAQA---------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~------~~~~~---------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|++++|||||+++|++. ..... .-..++|++.....+..+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------- 73 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------- 73 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC-----------------
Confidence 3579999999999999999999832 11110 112466666433332221
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.++.||||||.. .+...+...+..+|++++|+|+.+.
T Consensus 74 ~~~~~liDtpGh~-------~f~~~~~~~~~~~D~~ilVvda~~g 111 (394)
T TIGR00485 74 NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSATDG 111 (394)
T ss_pred CEEEEEEECCchH-------HHHHHHHHHHhhCCEEEEEEECCCC
Confidence 2679999999973 3444666777889999999999763
No 263
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.67 E-value=4.2e-08 Score=102.60 Aligned_cols=104 Identities=15% Similarity=0.045 Sum_probs=58.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccC----------CCCccccceEEE--eec-CCCcch--hhccccccccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FPFCTIEPNVGI--VAV-PDPRLH--VLSGLSKSQKA 118 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~----------~p~tT~~~~~~~--~~~-~~~~~d--~l~~~~~~~~~ 118 (424)
...++|+++|++|+|||||+++|+......... ..++|.+..... .+. +.++-. .+...+....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 345899999999999999999998443332211 123321110000 000 000000 00111111122
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
...++.|+||||. +.+.......++.+|++++|||+...
T Consensus 105 ~~~~i~~iDTPGh-------~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 105 EKRKFIIADTPGH-------EQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred CCcEEEEEECCCc-------HHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 3478999999995 23444555667999999999999654
No 264
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.67 E-value=3.9e-08 Score=101.69 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccc------------------------------cCCCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQA------------------------------ANFPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~------------------------------s~~p~tT~~~~~~~~~~~~~ 104 (424)
..++|+++|.+++|||||+++|+....... ....+.|++.....+..++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~- 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK- 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence 357999999999999999999984211110 0123556555555444433
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
.++.||||||. +.+...+...++.+|++++|+|+++..
T Consensus 85 ----------------~~i~iiDtpGh-------~~f~~~~~~~~~~aD~~ilVvDa~~~~ 122 (426)
T TIGR00483 85 ----------------YEVTIVDCPGH-------RDFIKNMITGASQADAAVLVVAVGDGE 122 (426)
T ss_pred ----------------eEEEEEECCCH-------HHHHHHHHhhhhhCCEEEEEEECCCCC
Confidence 67999999996 234445666678999999999998763
No 265
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.66 E-value=2.9e-07 Score=89.73 Aligned_cols=65 Identities=15% Similarity=0.218 Sum_probs=42.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC--------CCCcc-ccceEEEeecCCCcchhhccccccccccCceEEEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN--------FPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~--------~p~tT-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lv 126 (424)
.++|+++|.+|+|||||+|+|++......+. .+.|+ .......+...+. ..++.+|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~---------------~~~l~ii 68 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV---------------KLKLTVI 68 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE---------------EEEEEEE
Confidence 4799999999999999999999666554432 12221 2222222332221 2569999
Q ss_pred eCCCCCCCC
Q 014450 127 DIAGLVKGA 135 (424)
Q Consensus 127 DtpG~~~~~ 135 (424)
||||+.+..
T Consensus 69 DTpGfgd~~ 77 (276)
T cd01850 69 DTPGFGDNI 77 (276)
T ss_pred ecCCccccc
Confidence 999996553
No 266
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.64 E-value=6e-08 Score=90.71 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=53.6
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccc---cCCC---------------CccccceEEEeecCCCcchhhcccccccccc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQA---ANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~---s~~p---------------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
+|+++|.+++|||||+++|++...... .... +.|.......+.+ ......
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~------------~~~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVL------------PDSKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEE------------EcCCCC
Confidence 689999999999999999995433221 0011 1111111111111 000111
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+.+|||||..+. .......++.+|++++|+|+++
T Consensus 70 ~~~i~iiDtpG~~~f-------~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 70 SYLFNIIDTPGHVNF-------MDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred EEEEEEEECCCCcch-------HHHHHHHHHhCCEEEEEEECCC
Confidence 367999999998543 3356777899999999999854
No 267
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.64 E-value=7.5e-08 Score=90.85 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=55.3
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCcc---------------ccceEEEeecCCCcchhhccccccccccCce
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT---------------IEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT---------------~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 122 (424)
+|+++|.+++|||||+++|+...........+++ +......+.+..... ..+ +-...+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~------~~~-~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEE------DKA-DGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcc------ccc-CCCceE
Confidence 7999999999999999999843322111111111 111111111110000 000 011367
Q ss_pred EEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.||||||..++ .......++.||++++|+|+.+.
T Consensus 75 i~iiDTPG~~~f-------~~~~~~~l~~aD~~ilVvD~~~g 109 (222)
T cd01885 75 INLIDSPGHVDF-------SSEVTAALRLCDGALVVVDAVEG 109 (222)
T ss_pred EEEECCCCcccc-------HHHHHHHHHhcCeeEEEEECCCC
Confidence 999999998543 34677888999999999999643
No 268
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=5e-08 Score=86.51 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=45.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...++.++|.||+|||||+|+|.+.....+++.+++|.+.. .+..+ ..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKIT------------------SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcC------------------CCEEEEECcCC
Confidence 45789999999999999999999777778888888876533 22222 34899999996
No 269
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.62 E-value=5.3e-08 Score=100.03 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccC----------CC----------------------CccccceEEEeecCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FP----------------------FCTIEPNVGIVAVPDP 104 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~----------~p----------------------~tT~~~~~~~~~~~~~ 104 (424)
++|+++|++++|||||+++|+......... .. +.|++.....+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~----- 75 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYF----- 75 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEE-----
Confidence 479999999999999999998433221110 01 11222222222
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+...++.|+||||. +.+.......+..+|++++|||+...
T Consensus 76 ------------~~~~~~~~liDtPGh-------~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 76 ------------STDKRKFIVADTPGH-------EQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred ------------ccCCeEEEEEeCCCH-------HHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 223468999999996 33444556678999999999999754
No 270
>PRK12289 GTPase RsgA; Reviewed
Probab=98.62 E-value=3.7e-08 Score=98.97 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=44.7
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCC-------ccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~-------tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
.++|+|.||||||||+|+|.+.....+++.+. ||++... +..++ ...|+||||
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~------------------g~~liDTPG 233 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPN------------------GGLLADTPG 233 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCC------------------CcEEEeCCC
Confidence 48999999999999999999888888888777 7766532 33332 147999999
Q ss_pred CCCCC
Q 014450 131 LVKGA 135 (424)
Q Consensus 131 ~~~~~ 135 (424)
+....
T Consensus 234 ~~~~~ 238 (352)
T PRK12289 234 FNQPD 238 (352)
T ss_pred ccccc
Confidence 97554
No 271
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.60 E-value=7.2e-09 Score=89.34 Aligned_cols=152 Identities=16% Similarity=0.178 Sum_probs=94.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
-++..|+|-|++|||+|+-... .+...-+-...+..|.....+++++.+ ..+++|||+|.
T Consensus 8 LfkllIigDsgVGKssLl~rF~-ddtFs~sYitTiGvDfkirTv~i~G~~---------------VkLqIwDtAGq---- 67 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFA-DDTFSGSYITTIGVDFKIRTVDINGDR---------------VKLQIWDTAGQ---- 67 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHh-hcccccceEEEeeeeEEEEEeecCCcE---------------EEEEEeecccH----
Confidence 4577899999999999999998 555444444445556777778888866 77999999997
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-CchhhhhhhhhcccHHHHHHHHHH---HHhhcc----
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-SDVDVINLELVFSDLDQIEKRMEK---LKKGKA---- 207 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-~d~~~i~~el~~~~~~~i~~~~~~---i~k~~~---- 207 (424)
+.+....-...+..+++++|.|....+++..+..+...+ ...+.+..-|+.|+-|.-+++..- ..+.+.
T Consensus 68 ---ErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgi 144 (198)
T KOG0079|consen 68 ---ERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGI 144 (198)
T ss_pred ---HHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCc
Confidence 333334445568899999999998887654332221111 111122222556665555443211 111111
Q ss_pred -CCCcchhhHHHHHHHHHHHHHHH
Q 014450 208 -KDSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 208 -~~~~Sak~~~~~~~ll~~i~~~L 230 (424)
....|||+..|++..+.-|.+..
T Consensus 145 e~FETSaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 145 ELFETSAKENENVEAMFHCITKQV 168 (198)
T ss_pred hheehhhhhcccchHHHHHHHHHH
Confidence 11258888888887766655443
No 272
>PRK12288 GTPase RsgA; Reviewed
Probab=98.60 E-value=4.6e-08 Score=98.17 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=42.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCC-------ccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~-------tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
.++++|.||||||||+|+|++.....+++.+. ||+....- .+++ ...++||||
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~--~l~~------------------~~~liDTPG 266 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLY--HFPH------------------GGDLIDSPG 266 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEE--EecC------------------CCEEEECCC
Confidence 48999999999999999999877777776664 45443322 2221 246999999
Q ss_pred CCCCC
Q 014450 131 LVKGA 135 (424)
Q Consensus 131 ~~~~~ 135 (424)
+....
T Consensus 267 ir~~~ 271 (347)
T PRK12288 267 VREFG 271 (347)
T ss_pred CCccc
Confidence 97553
No 273
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3.4e-07 Score=94.07 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=94.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc--------------ccCCCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ--------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~--------------~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
..+++||-+--=|||||.-+|+....+. +...-+.|+..+...+.+.+ -.+.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~--------------~~~y 125 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKD--------------GQSY 125 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEc--------------CCce
Confidence 4689999999999999999998322211 11222444444444333322 1136
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecc----ccccCCchhhhhh-hhhcccHHHHH
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG----KVDPKSDVDVINL-ELVFSDLDQIE 196 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~----~~dp~~d~~~i~~-el~~~~~~~i~ 196 (424)
.+.+|||||.+++.. +.-..+..||.+|+||||++...-..+.+ ....+.-++++|+ .+-..+.+.++
T Consensus 126 lLNLIDTPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~ 198 (650)
T KOG0462|consen 126 LLNLIDTPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVE 198 (650)
T ss_pred EEEeecCCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHH
Confidence 689999999998876 44555677999999999988653100000 0001111222222 12244555566
Q ss_pred HHHHHHHhhccCC--CcchhhHHHHHHHHHHHHHHHhC
Q 014450 197 KRMEKLKKGKAKD--SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 197 ~~~~~i~k~~~~~--~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+..+-...... .+|||+|.+.+++|++|++..|.
T Consensus 199 ~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 199 NQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred HHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 5554443332221 26999999999999999999974
No 274
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.9e-08 Score=89.84 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=97.4
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.....+||+++|-|+||||-|+.+.+ .+......++....+.....+.+++.. ...++|||+|.
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRft-rnEF~~~SksTIGvef~t~t~~vd~k~---------------vkaqIWDTAGQ 73 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFT-RNEFSLESKSTIGVEFATRTVNVDGKT---------------VKAQIWDTAGQ 73 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhc-ccccCcccccceeEEEEeeceeecCcE---------------EEEeeecccch
Confidence 34556899999999999999999999 766666666666666666666776643 56899999998
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCC-----chhhhhhhhhcccHHHHHHHHH---HHH
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS-----DVDVINLELVFSDLDQIEKRME---KLK 203 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~-----d~~~i~~el~~~~~~~i~~~~~---~i~ 203 (424)
-+. ..-.-+..|.|-..++|.|.+....+.++..+...++ .+.++ |+.|+.|....+-. ...
T Consensus 74 ERy-------rAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivim---LvGNK~DL~~lraV~te~~k 143 (222)
T KOG0087|consen 74 ERY-------RAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIM---LVGNKSDLNHLRAVPTEDGK 143 (222)
T ss_pred hhh-------ccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEE---EeecchhhhhccccchhhhH
Confidence 433 2234566789999999999977665444443332221 23333 56777776543211 111
Q ss_pred hhcc-----CCCcchhhHHHHHHHHHHHHHH
Q 014450 204 KGKA-----KDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 204 k~~~-----~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
..+. ....||....|++...+.+...
T Consensus 144 ~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 144 AFAEKEGLFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred hHHHhcCceEEEecccccccHHHHHHHHHHH
Confidence 1111 0125788878877766655443
No 275
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.56 E-value=1.1e-07 Score=83.49 Aligned_cols=147 Identities=23% Similarity=0.258 Sum_probs=92.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++..+||-+-+|||+|+...|.++-+..+ ||.+|. |+.+.+..-+.-....+++|||+|.
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaels-------dptvgv--------dffarlie~~pg~riklqlwdtagq---- 68 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTVGV--------DFFARLIELRPGYRIKLQLWDTAGQ---- 68 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccC-------CCccch--------HHHHHHHhcCCCcEEEEEEeeccch----
Confidence 468899999999999999999966655544 344442 2222221111111267999999998
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-------CchhhhhhhhhcccHHHHHHHH---HHHHhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-------SDVDVINLELVFSDLDQIEKRM---EKLKKG 205 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-------~d~~~i~~el~~~~~~~i~~~~---~~i~k~ 205 (424)
+.+..-+.+..|++-.+++|.|.++..++.|+.++.... ..+-.+ |+..+.|....|. +..++.
T Consensus 69 ---erfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFl---LVGhKsDL~SqRqVt~EEaEkl 142 (213)
T KOG0091|consen 69 ---ERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFL---LVGHKSDLQSQRQVTAEEAEKL 142 (213)
T ss_pred ---HHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEE---EeccccchhhhccccHHHHHHH
Confidence 444457788899999999999999999888877654211 011111 3444555443321 222233
Q ss_pred ccCC-----CcchhhHHHHHHHHHHHH
Q 014450 206 KAKD-----SQSKLKEDAEKAALEKIQ 227 (424)
Q Consensus 206 ~~~~-----~~Sak~~~~~~~ll~~i~ 227 (424)
+... ..||+++.|+++....+.
T Consensus 143 Aa~hgM~FVETSak~g~NVeEAF~mla 169 (213)
T KOG0091|consen 143 AASHGMAFVETSAKNGCNVEEAFDMLA 169 (213)
T ss_pred HHhcCceEEEecccCCCcHHHHHHHHH
Confidence 2221 259999999988665544
No 276
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=5.1e-08 Score=84.12 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=91.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
....|+.|+|...+|||||+-+-+ .+....+-+....++.....+-..+.| ..+++|||+|.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~-ddSFt~afvsTvGidFKvKTvyr~~kR---------------iklQiwDTagq-- 80 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVYRSDKR---------------IKLQIWDTAGQ-- 80 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhh-ccccccceeeeeeeeEEEeEeeecccE---------------EEEEEEecccc--
Confidence 334699999999999999999998 444433333333344333344344443 56999999998
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHHH---HHHHhh
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKRM---EKLKKG 205 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~~---~~i~k~ 205 (424)
+.+..-+...+|+|++++++.|..+++++..+..+...+ .++++| ++.++.|.-..|. ++....
T Consensus 81 -----EryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvi---lvgnKCDmd~eRvis~e~g~~l 152 (193)
T KOG0093|consen 81 -----ERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVI---LVGNKCDMDSERVISHERGRQL 152 (193)
T ss_pred -----hhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEE---EEecccCCccceeeeHHHHHHH
Confidence 445556678899999999999998887643322221111 223333 3344443322211 111111
Q ss_pred c---c--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 K---A--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ~---~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. . ....|||.+.|+..+++++.....
T Consensus 153 ~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 153 ADQLGFEFFETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred HHHhChHHhhhcccccccHHHHHHHHHHHHH
Confidence 1 0 112588888899888888776664
No 277
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.54 E-value=1.4e-07 Score=85.88 Aligned_cols=81 Identities=25% Similarity=0.378 Sum_probs=50.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|.|+|++|+|||+||..|+.+.... -.|...++.+. .+... ....+.+||+||..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~----T~tS~e~n~~~-~~~~~--------------~~~~~~lvD~PGH~--- 60 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVP----TVTSMENNIAY-NVNNS--------------KGKKLRLVDIPGHP--- 60 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEEC-CGSST--------------CGTCECEEEETT-H---
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCC----eeccccCCceE-EeecC--------------CCCEEEEEECCCcH---
Confidence 3579999999999999999999542211 12333344332 22110 12569999999973
Q ss_pred Ccccchhhhhhhh---hhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSH---IREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~---i~~aD~il~Vvda~ 162 (424)
.+...++.. +..+.+|++|||++
T Consensus 61 ----rlr~~~~~~~~~~~~~k~IIfvvDSs 86 (181)
T PF09439_consen 61 ----RLRSKLLDELKYLSNAKGIIFVVDSS 86 (181)
T ss_dssp ----CCCHHHHHHHHHHGGEEEEEEEEETT
T ss_pred ----HHHHHHHHhhhchhhCCEEEEEEeCc
Confidence 333455554 88899999999984
No 278
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.52 E-value=4.7e-07 Score=86.28 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=62.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEe-----------ecCCCcchh-------hc------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-----------AVPDPRLHV-------LS------ 110 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~-----------~~~~~~~d~-------l~------ 110 (424)
..++|++||..++||||++|+|+|...... ..-.+|+.|..-.+ ...+..++. +.
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~-~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCcccc-CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 347999999999999999999996542222 23345555544322 122111110 00
Q ss_pred --------------cccccccccCceEEEEeCCCCCCCCCcc------cchhhhhhhhhh-ccceEEEEeecCC
Q 014450 111 --------------GLSKSQKAVPASVEFVDIAGLVKGASQG------EGLGNKFLSHIR-EVDSILQVVRCFE 163 (424)
Q Consensus 111 --------------~~~~~~~~~~~~i~lvDtpG~~~~~~~~------~~~~~~~l~~i~-~aD~il~Vvda~~ 163 (424)
+++.|. -..+.|+||||+......+ ..+.+.+..+++ ..+++|+|+|+..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~---~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~ 174 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPH---VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANV 174 (240)
T ss_pred cCCCCcccCcceEEEEeCCC---CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCC
Confidence 011111 1469999999997542111 223355677788 4569999999853
No 279
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.52 E-value=1e-07 Score=91.39 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCC-------CccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
..++++|.||||||||+|+|.+.....+++.+ +||++...-.. .+ -.++|||
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~-------------------~~liDtP 179 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG-------------------GLIADTP 179 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC-------------------cEEEeCC
Confidence 47899999999999999999976655544443 36665544332 22 3799999
Q ss_pred CCCCCC
Q 014450 130 GLVKGA 135 (424)
Q Consensus 130 G~~~~~ 135 (424)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 997643
No 280
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.51 E-value=1.9e-07 Score=93.80 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=50.4
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCC----CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEe
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENG----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~----~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvD 127 (424)
..+..++||++|.+|+|||||+|+|-|-. .+.......||.++..... |. ...+.|||
T Consensus 31 ~~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~----------------~pnv~lWD 92 (376)
T PF05049_consen 31 IDNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PK----------------FPNVTLWD 92 (376)
T ss_dssp HHH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-----------------TTEEEEE
T ss_pred hhcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CC----------------CCCCeEEe
Confidence 34557899999999999999999997622 1222222346666554443 22 13499999
Q ss_pred CCCCCCCCCcccchhhhhhh--hhhccceEEEEeec
Q 014450 128 IAGLVKGASQGEGLGNKFLS--HIREVDSILQVVRC 161 (424)
Q Consensus 128 tpG~~~~~~~~~~~~~~~l~--~i~~aD~il~Vvda 161 (424)
.||+....... +.++. .+...|.+|+|.+.
T Consensus 93 lPG~gt~~f~~----~~Yl~~~~~~~yD~fiii~s~ 124 (376)
T PF05049_consen 93 LPGIGTPNFPP----EEYLKEVKFYRYDFFIIISSE 124 (376)
T ss_dssp E--GGGSS--H----HHHHHHTTGGG-SEEEEEESS
T ss_pred CCCCCCCCCCH----HHHHHHccccccCEEEEEeCC
Confidence 99995443322 34443 36778998887664
No 281
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.51 E-value=3.1e-07 Score=86.84 Aligned_cols=80 Identities=23% Similarity=0.313 Sum_probs=53.5
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...+..|+++|+||+|||||+|+|.+... .++.....|.+.+ +.+ ...++.++||||..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~-------~~~~~~~~g~i~i-----------~~~---~~~~i~~vDtPg~~ 94 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYT-------KQNISDIKGPITV-----------VTG---KKRRLTFIECPNDI 94 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcc-------cCccccccccEEE-----------Eec---CCceEEEEeCCchH
Confidence 34567899999999999999999994321 1122222221110 000 12679999999853
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+..++.+|++++|+|++.
T Consensus 95 ----------~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 95 ----------NAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred ----------HHHHHHHHhcCEEEEEEecCc
Confidence 355667899999999999864
No 282
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.4e-07 Score=81.78 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=65.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..-+|+.++|..+.|||.|+.... .+...-.......++.-..++.+++.+ ..+++|||+|.
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fi-e~kfkDdssHTiGveFgSrIinVGgK~---------------vKLQIWDTAGQ-- 68 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFI-ENKFKDDSSHTIGVEFGSRIVNVGGKT---------------VKLQIWDTAGQ-- 68 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHH-HhhhcccccceeeeeecceeeeecCcE---------------EEEEEeecccH--
Confidence 345799999999999999999999 443322222223334444556666644 67999999998
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
+.+..-..+..|.|-..++|.|+...+.+
T Consensus 69 -----ErFRSVtRsYYRGAAGAlLVYD~Tsrdsf 97 (214)
T KOG0086|consen 69 -----ERFRSVTRSYYRGAAGALLVYDITSRDSF 97 (214)
T ss_pred -----HHHHHHHHHHhccccceEEEEeccchhhH
Confidence 44555677888999999999999877654
No 283
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.45 E-value=2.7e-07 Score=89.24 Aligned_cols=70 Identities=24% Similarity=0.353 Sum_probs=52.7
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhc-----CCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEE
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVE-----NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEF 125 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g-----~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~l 125 (424)
+...+.++|-+||.||+|||||+|++-. .+.+.+++.|+.|+.... .+.+... ..+.+
T Consensus 138 rt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~r----------------p~vy~ 200 (335)
T KOG2485|consen 138 RTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHR----------------PPVYL 200 (335)
T ss_pred cccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccC----------------CceEE
Confidence 3355679999999999999999999863 355789999999976543 2333221 34899
Q ss_pred EeCCCCCCCCCc
Q 014450 126 VDIAGLVKGASQ 137 (424)
Q Consensus 126 vDtpG~~~~~~~ 137 (424)
+||||+..+...
T Consensus 201 iDTPGil~P~I~ 212 (335)
T KOG2485|consen 201 IDTPGILVPSIV 212 (335)
T ss_pred ecCCCcCCCCCC
Confidence 999999877654
No 284
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.44 E-value=7.5e-07 Score=84.23 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=27.8
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhh--ccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIR--EVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~--~aD~il~Vvda~~~ 164 (424)
...+.|+||||.. .+...+...+. .+|++++|+|+...
T Consensus 83 ~~~i~liDtpG~~-------~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 83 SKLVTFIDLAGHE-------RYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred CcEEEEEECCCcH-------HHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 3569999999973 33445555554 69999999998654
No 285
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.43 E-value=7e-07 Score=83.20 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=54.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|.+..... ...| |......+.......+ ...+.+|||+|..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~---- 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPE-GYPP-TIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQE---- 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcc-cCCC-ceeeeeEEEEEEeCCC--------------EEEEEeecCCCHH----
Confidence 799999999999999999999444332 2222 1112222222221110 1568999999983
Q ss_pred cccchhhhhhhhhhccceEEEEeecCC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+........+.++++++++|...
T Consensus 66 ---~~~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 66 ---EYRSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred ---HHHHHHHHHhcCCCEEEEEEeccc
Confidence 333344566789999999999753
No 286
>PLN00023 GTP-binding protein; Provisional
Probab=98.42 E-value=8.6e-07 Score=87.56 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+||+++|..+||||||++.++++ .......|..+.+.....+.+++.-- .+.. ..........+.||||+|.-...
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g-~F~~~~~pTIG~d~~ik~I~~~~~~~-~~~~-ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKG-SSIARPPQTIGCTVGVKHITYGSPGS-SSNS-IKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcC-CcccccCCceeeeEEEEEEEECCccc-cccc-ccccCCceEEEEEEECCCChhhh
Confidence 479999999999999999999943 33222222222222223333321000 0000 00000012569999999974322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
......++++|++|+|+|+++
T Consensus 98 -------sL~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 98 -------DCRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred -------hhhHHhccCCCEEEEEEeCCC
Confidence 233445789999999999854
No 287
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.40 E-value=1.6e-06 Score=90.09 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=54.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccC-------------------------------CCCccccceEEEeecCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------------------------------FPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~-------------------------------~p~tT~~~~~~~~~~~~ 103 (424)
..++|+++|..++|||||+-+|+-.... +.. .-+.|++....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~-i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~------ 78 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGG-IDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALW------ 78 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCC-CcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEE------
Confidence 3478999999999999999999721111 000 00122221111
Q ss_pred CcchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 104 ~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+....+.|+||||. +.+.......++.||++++|||+.+
T Consensus 79 -----------~~~~~~~~i~liDtPGh-------~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 79 -----------KFETTKYYCTVIDAPGH-------RDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred -----------EecCCCEEEEEEECCCH-------HHHHHHHHhhhhhccEEEEEEEccc
Confidence 11223467999999997 3445566777899999999999953
No 288
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.39 E-value=5.3e-07 Score=93.74 Aligned_cols=166 Identities=17% Similarity=0.177 Sum_probs=87.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCcccc--CCCCccccceEEEee-----------------cCCCcc-hhhcccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA--NFPFCTIEPNVGIVA-----------------VPDPRL-HVLSGLS 113 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--~~p~tT~~~~~~~~~-----------------~~~~~~-d~l~~~~ 113 (424)
...++||++|+-..|||||+.+|||.....-. -.-+.|++ .|... .++... +..+...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~--lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIK--LGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC 109 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchh--ccccccccccCcccCCcccccccCCCcccccccccc
Confidence 44589999999999999999999964332111 11133322 11110 000000 0000000
Q ss_pred ccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC-Cc---eeeeccccccCCchhhhhhhhhc
Q 014450 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED-ND---IVHVNGKVDPKSDVDVINLELVF 189 (424)
Q Consensus 114 ~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~-~~---~~~~~~~~dp~~d~~~i~~el~~ 189 (424)
........++.|+||||. +.+...+++.+..+|++++|||+.+. .. ..|.. ..+.+.--..+ +.+
T Consensus 110 ~~~~~~~~~i~~IDtPGH-------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi~~iI---Vvl 178 (460)
T PTZ00327 110 GHKMTLKRHVSFVDCPGH-------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKLKHII---ILQ 178 (460)
T ss_pred cccccccceEeeeeCCCH-------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCCCcEE---EEE
Confidence 000111246899999995 45666777888899999999999763 11 01100 00000000001 234
Q ss_pred ccHHHH-----HHHHHHHHhhcc-----C---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 190 SDLDQI-----EKRMEKLKKGKA-----K---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 190 ~~~~~i-----~~~~~~i~k~~~-----~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
|++|.+ +.....+..... . -++||+++.|++.|++.|.+.+|.
T Consensus 179 NKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 444432 222222222111 1 126999999999999999887754
No 289
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.38 E-value=7.6e-08 Score=83.98 Aligned_cols=148 Identities=19% Similarity=0.181 Sum_probs=93.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccc--eEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP--NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~--~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..++|+++|..-||||||+=+.+ ...+. .+.-+|+.. ....+.+.|.| +++.+|||+|.-
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~-EnkFn--~kHlsTlQASF~~kk~n~ed~r---------------a~L~IWDTAGQE 73 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYV-ENKFN--CKHLSTLQASFQNKKVNVEDCR---------------ADLHIWDTAGQE 73 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHH-Hhhcc--hhhHHHHHHHHhhcccccccce---------------eeeeeeeccchH
Confidence 45899999999999999999888 44332 222333332 22334555544 779999999985
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCc-----hhhhhhhhhcccHHHHHHHHHHHH---h
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD-----VDVINLELVFSDLDQIEKRMEKLK---K 204 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d-----~~~i~~el~~~~~~~i~~~~~~i~---k 204 (424)
++...|. -..|.+|.+|+|.|.++.+++..+.+++-.++. +..+ ++.|++|.-+.+..... .
T Consensus 74 rfHALGP-------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~---IVGNKiDLEeeR~Vt~qeAe~ 143 (218)
T KOG0088|consen 74 RFHALGP-------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELL---IVGNKIDLEEERQVTRQEAEA 143 (218)
T ss_pred hhhccCc-------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEE---EecCcccHHHhhhhhHHHHHH
Confidence 5443222 236889999999999998887666666543321 2222 34677776554432211 1
Q ss_pred hccC-----CCcchhhHHHHHHHHHHHHHHH
Q 014450 205 GKAK-----DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 205 ~~~~-----~~~Sak~~~~~~~ll~~i~~~L 230 (424)
.+.+ ...||+++.++.++++.+-+.+
T Consensus 144 YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 144 YAESVGALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred HHHhhchhheecccccccCHHHHHHHHHHHH
Confidence 1111 1259999999998877665443
No 290
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.38 E-value=9.1e-07 Score=88.14 Aligned_cols=172 Identities=20% Similarity=0.168 Sum_probs=86.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhc------CCCccccCCCCccc-----------------cceEEEeecCC-Ccch-
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTI-----------------EPNVGIVAVPD-PRLH- 107 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g------~~~~~~s~~p~tT~-----------------~~~~~~~~~~~-~~~d- 107 (424)
...+..|+|.|.||||||||+++|.. ...+.++.-|.+.. +|..-+...++ ..+.
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 34568999999999999999998762 12222333332221 11111111110 0000
Q ss_pred ---hhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhh
Q 014450 108 ---VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVIN 184 (424)
Q Consensus 108 ---~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~ 184 (424)
.+.....--...+..++|+||+|+.+... .....||++++|++.....++.... . ..+++.
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~----------~i~~~aD~vlvv~~p~~gd~iq~~k--~---gi~E~a- 196 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSET----------AVAGMVDFFLLLQLPGAGDELQGIK--K---GIMELA- 196 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchh----------HHHHhCCEEEEEecCCchHHHHHHH--h---hhhhhh-
Confidence 00000000112246799999999963221 1256799999998632222211100 0 001111
Q ss_pred hhhhcccHHHHHH-----HHHHHHhhcc--------C-CC---cchhhHHHHHHHHHHHHHHHhCCCCccCC-CCCH
Q 014450 185 LELVFSDLDQIEK-----RMEKLKKGKA--------K-DS---QSKLKEDAEKAALEKIQQALMDGKPARSV-TLND 243 (424)
Q Consensus 185 ~el~~~~~~~i~~-----~~~~i~k~~~--------~-~~---~Sak~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~ 243 (424)
.-++.||.|.+.+ ....+..... . .+ +||+++.++++|++.|.++++ ++++. .+++
T Consensus 197 DIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~~sg~l~~ 270 (332)
T PRK09435 197 DLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALTASGEFAA 270 (332)
T ss_pred heEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhccCChHHH
Confidence 1144566664321 1112221111 1 12 699999999999999999986 44544 2444
No 291
>PRK13768 GTPase; Provisional
Probab=98.37 E-value=1.1e-06 Score=84.54 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhc--cceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIRE--VDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~--aD~il~Vvda~~~ 164 (424)
..+.++||||..+.... ...+..+...+.. ++++++|+|++..
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~~ 141 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVLA 141 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHHh
Confidence 36999999998765432 3445566666655 8999999999653
No 292
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.35 E-value=6.4e-07 Score=98.47 Aligned_cols=89 Identities=21% Similarity=0.230 Sum_probs=56.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccc---------cCC------CCccccceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA---------ANF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~---------s~~------p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+++|..++|||||+++|+....... .++ .+.|++...... +....+..
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~-------------~~~~~~~~ 85 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSM-------------VHEYEGNE 85 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhccccee-------------EEeecCCc
Confidence 46999999999999999999983221110 000 122222111110 00012334
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.|+||||..++. ......++.+|++++|+|+.+.
T Consensus 86 ~~i~liDTPG~~~f~-------~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 86 YLINLIDTPGHVDFG-------GDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred eEEEEEeCCCccccH-------HHHHHHHHhcCEEEEEEecCCC
Confidence 789999999996532 3667788999999999998653
No 293
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=4.8e-07 Score=81.25 Aligned_cols=84 Identities=24% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|.++|+-||||||++..|--+....+ .| |+..++-.+.+.+ ..+.+||.-|..+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt--vP--TiGfnVE~v~ykn-----------------~~f~vWDvGGq~k- 73 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--VP--TIGFNVETVEYKN-----------------ISFTVWDVGGQEK- 73 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC--CC--ccccceeEEEEcc-----------------eEEEEEecCCCcc-
Confidence 357999999999999999999974443332 22 5555666677665 7799999999833
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
+..-+....++.+++++|||+++...
T Consensus 74 ------~R~lW~~Y~~~t~~lIfVvDS~Dr~R 99 (181)
T KOG0070|consen 74 ------LRPLWKHYFQNTQGLIFVVDSSDRER 99 (181)
T ss_pred ------cccchhhhccCCcEEEEEEeCCcHHH
Confidence 33356677899999999999988664
No 294
>PRK00098 GTPase RsgA; Reviewed
Probab=98.35 E-value=4.8e-07 Score=89.23 Aligned_cols=58 Identities=22% Similarity=0.280 Sum_probs=41.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCC-------ccccceEEEeecCCCcchhhccccccccccCceEEEEeC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~-------tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDt 128 (424)
...++++|.||||||||+|+|+|.....++..+. ||+.+....+ ++ ...++||
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~--~~------------------~~~~~Dt 223 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDL--PG------------------GGLLIDT 223 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEc--CC------------------CcEEEEC
Confidence 3579999999999999999999776665555543 5644433322 21 2578999
Q ss_pred CCCCC
Q 014450 129 AGLVK 133 (424)
Q Consensus 129 pG~~~ 133 (424)
||+..
T Consensus 224 pG~~~ 228 (298)
T PRK00098 224 PGFSS 228 (298)
T ss_pred CCcCc
Confidence 99974
No 295
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.34 E-value=1.1e-05 Score=72.48 Aligned_cols=86 Identities=13% Similarity=0.136 Sum_probs=59.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc-------ccCCC--CccccceEEEeecCCCcchhhccccccccccCceEEEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~-------~s~~p--~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lv 126 (424)
..+|+++|.-++||||++.++....... .+... .||.-.-.|.+.+.+ ...+.|+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~----------------~~~v~Lf 73 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----------------DTGVHLF 73 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC----------------cceEEEe
Confidence 5799999999999999999999433221 22222 356555556665544 2579999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
||||..++. -.+--..+.++.++++||++.+
T Consensus 74 gtPGq~RF~-------fm~~~l~~ga~gaivlVDss~~ 104 (187)
T COG2229 74 GTPGQERFK-------FMWEILSRGAVGAIVLVDSSRP 104 (187)
T ss_pred cCCCcHHHH-------HHHHHHhCCcceEEEEEecCCC
Confidence 999985432 1233345789999999998643
No 296
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.34 E-value=1e-06 Score=91.54 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcc------------------------ccC------CCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AAN------FPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~------------------------~s~------~p~tT~~~~~~~~~~~~~ 104 (424)
+.++|+++|..++|||||+.+|+...... +.+ ..+.|++.....+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~---- 81 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE---- 81 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc----
Confidence 34799999999999999999998311110 000 11233332222222
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+....+.|+||||. ..+.......+..||++++|||+...
T Consensus 82 -------------~~~~~i~lIDtPGh-------~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 82 -------------TPKYYFTIIDAPGH-------RDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred -------------cCCeEEEEEECCCh-------HHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 23467999999996 34555677778999999999999764
No 297
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=3.6e-07 Score=81.58 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=34.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccc---cCC----CCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQA---ANF----PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~---s~~----p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
..++++|.+|||||||+|+|.+.....+ +.. -+||+... .+..+ ....++|||
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~--l~~l~------------------~g~~iIDTP 95 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRE--LFPLP------------------DGGYIIDTP 95 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEE--EEEET------------------TSEEEECSH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCee--EEecC------------------CCcEEEECC
Confidence 5799999999999999999997644332 222 24443332 23333 236899999
Q ss_pred CCCCC
Q 014450 130 GLVKG 134 (424)
Q Consensus 130 G~~~~ 134 (424)
|+-..
T Consensus 96 Gf~~~ 100 (161)
T PF03193_consen 96 GFRSF 100 (161)
T ss_dssp HHHT-
T ss_pred CCCcc
Confidence 99543
No 298
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.33 E-value=1.3e-06 Score=88.65 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=92.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCc--------------cccCCCCccccceEEEeecCCCcchhhccccccccccCce
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKA--------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~--------------~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~ 122 (424)
.+.+||-+---|||||.-+|...... .....-+.|+..+...+.+.. +.-....
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~------------~~g~~Y~ 77 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKA------------KDGETYV 77 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEe------------CCCCEEE
Confidence 46788888889999999999832111 111223566665555544322 1112367
Q ss_pred EEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccc----cccCCchhhhhh-hhhcccHHHHHH
Q 014450 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK----VDPKSDVDVINL-ELVFSDLDQIEK 197 (424)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~----~dp~~d~~~i~~-el~~~~~~~i~~ 197 (424)
+.|+||||.+++.. +.-+.+..|...|+||||++...-..+.|. .+.++=++++|+ .|-..+.+.+..
T Consensus 78 lnlIDTPGHVDFsY-------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 78 LNLIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred EEEcCCCCccceEE-------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHH
Confidence 99999999998876 444556778999999999986421000000 011111222222 122334444444
Q ss_pred HHHHHHhhccCC--CcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 RMEKLKKGKAKD--SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 ~~~~i~k~~~~~--~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.++.+--..... -+|||+|.+++++++.|.+.+|.
T Consensus 151 eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 151 EIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred HHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 333322111111 16999999999999999999975
No 299
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.31 E-value=1.9e-06 Score=81.73 Aligned_cols=88 Identities=11% Similarity=0.045 Sum_probs=56.1
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||.++|+.++||||..+.+.++-.+.-..+-+.|.++....+...+ ...+.+||+||.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~----------------~~~l~iwD~pGq~~~~~~ 64 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS----------------FLPLNIWDCPGQDDFMEN 64 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT----------------SCEEEEEEE-SSCSTTHT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC----------------CcEEEEEEcCCccccccc
Confidence 6899999999999999999955444444555677777666665433 257999999998644321
Q ss_pred ccchhhhhhhhhhccceEEEEeecCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+..+--.-.++++++++|+|+..
T Consensus 65 --~~~~~~~~if~~v~~LIyV~D~qs 88 (232)
T PF04670_consen 65 --YFNSQREEIFSNVGVLIYVFDAQS 88 (232)
T ss_dssp --THTCCHHHHHCTESEEEEEEETT-
T ss_pred --cccccHHHHHhccCEEEEEEEccc
Confidence 111222334688999999999963
No 300
>PTZ00416 elongation factor 2; Provisional
Probab=98.26 E-value=1.8e-06 Score=96.37 Aligned_cols=95 Identities=19% Similarity=0.233 Sum_probs=58.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccc---------------cceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~---------------~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+|+|++++|||||.++|+....+......++|+ +.....+.+.. .....++...
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~-------~~~~~~~~~~ 91 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEH-------DLEDGDDKQP 91 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeec-------ccccccCCCc
Confidence 4599999999999999999999543332222222221 11000011100 0000001113
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..+.|+||||..+ +.......++.+|++++|+|+.+.
T Consensus 92 ~~i~liDtPG~~~-------f~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 92 FLINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred eEEEEEcCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCC
Confidence 5799999999854 344678888999999999999764
No 301
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=6.7e-07 Score=92.87 Aligned_cols=234 Identities=13% Similarity=0.126 Sum_probs=126.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhh----------ccccccccccCceEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL----------SGLSKSQKAVPASVE 124 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l----------~~~~~~~~~~~~~i~ 124 (424)
...+|||+-+--+||||+-+.++ ..... ....+.+.-.+...|++ ........|....+.
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~L-yy~G~---------~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iN 107 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERML-YYTGR---------IKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRIN 107 (721)
T ss_pred hhcccceEEEEecCCceeeheee-eecce---------eeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeE
Confidence 45689999999999999999998 22221 11112222222222221 111122334457899
Q ss_pred EEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HHHHHH
Q 014450 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RMEKLK 203 (424)
Q Consensus 125 lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~~~i~ 203 (424)
+|||||.+++.- +.-.+++.-|..+.|+|+..... + +-..+ +..+..... ++.+++
T Consensus 108 iIDTPGHvDFT~-------EVeRALrVlDGaVlvl~aV~GVq---------s--Qt~tV-----~rQ~~ry~vP~i~FiN 164 (721)
T KOG0465|consen 108 IIDTPGHVDFTF-------EVERALRVLDGAVLVLDAVAGVE---------S--QTETV-----WRQMKRYNVPRICFIN 164 (721)
T ss_pred EecCCCceeEEE-------EehhhhhhccCeEEEEEccccee---------h--hhHHH-----HHHHHhcCCCeEEEEe
Confidence 999999987654 55667888899999999843210 0 11111 111110000 111222
Q ss_pred hhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEec----cccccccCCCCCCc
Q 014450 204 KGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA----NVAESDLADPGSNP 278 (424)
Q Consensus 204 k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~----nv~~~~~~~~~~~~ 278 (424)
|+.+ -|.+....++.+...|...+.+ .+++..-...+. -+++.-.|.+.+-. .+...++| ++
T Consensus 165 KmDR-------mGa~~~~~l~~i~~kl~~~~a~--vqiPig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP----~~ 231 (721)
T KOG0465|consen 165 KMDR-------MGASPFRTLNQIRTKLNHKPAV--VQIPIGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIP----ED 231 (721)
T ss_pred hhhh-------cCCChHHHHHHHHhhcCCchhe--eEccccccccchhHHhhhhceEEEEcCCCCceeEeccCC----HH
Confidence 3321 1223334445555555322111 123322111233 23344455554421 12222333 22
Q ss_pred chHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 279 HVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 279 ~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
..+...+. +..+-+-|+++|++..++||++-..+.+.|..+|+.+--.-.+.|||-
T Consensus 232 l~~~~~e~-----------R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~Ti~r~fvPVl~ 287 (721)
T KOG0465|consen 232 LEELAEEK-----------RQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRATIKRSFVPVLC 287 (721)
T ss_pred HHHHHHHH-----------HHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHHHhhcceeeEEe
Confidence 33333332 555677789999999999999999999999999998888888899984
No 302
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.23 E-value=1.7e-06 Score=95.24 Aligned_cols=89 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCC---------------ccccceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF---------------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~---------------tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+++|++++|||||+++|+...........+ .|++.....+.+ .. ...+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~------------~~-~~~~ 86 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVH------------EY-EGKE 86 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEE------------Ee-cCCc
Confidence 4689999999999999999998433222111111 111111111111 00 0124
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.|+||||..++ .......++.+|++++|||+...
T Consensus 87 ~~i~liDtPG~~df-------~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 87 YLINLIDTPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred EEEEEEcCCCccCh-------HHHHHHHHHhcCEEEEEEECCCC
Confidence 78999999999653 34677888999999999998764
No 303
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.20 E-value=1.7e-06 Score=84.81 Aligned_cols=59 Identities=24% Similarity=0.342 Sum_probs=39.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCC-------CccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
..++++|.+|||||||+|+|+|.....++..+ .||+.... +..++ ...++|||
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~~~------------------~~~liDtP 221 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPLPG------------------GGLLIDTP 221 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEcCC------------------CCEEEECC
Confidence 57999999999999999999976554443332 34443322 22221 24799999
Q ss_pred CCCCCC
Q 014450 130 GLVKGA 135 (424)
Q Consensus 130 G~~~~~ 135 (424)
|+.+..
T Consensus 222 G~~~~~ 227 (287)
T cd01854 222 GFREFG 227 (287)
T ss_pred CCCccC
Confidence 996543
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.20 E-value=1.8e-06 Score=96.34 Aligned_cols=101 Identities=18% Similarity=0.175 Sum_probs=58.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccc---------------cceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~---------------~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+|+|++++|||||.++|+...........++|+ ......+.++... ..+...-...+...
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTD-ESLKDFKGERDGNE 97 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccc-ccccccccccCCCc
Confidence 4689999999999999999998444332222222221 1111111111000 00000000001124
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..+.|+||||..++ .......++.+|.+++|||+.+.
T Consensus 98 ~~inliDtPGh~dF-------~~e~~~al~~~D~ailVvda~~G 134 (843)
T PLN00116 98 YLINLIDSPGHVDF-------SSEVTAALRITDGALVVVDCIEG 134 (843)
T ss_pred eEEEEECCCCHHHH-------HHHHHHHHhhcCEEEEEEECCCC
Confidence 67899999998543 34667888999999999999754
No 305
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=98.19 E-value=4.5e-06 Score=90.91 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=56.0
Q ss_pred CcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014450 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 418 (424)
Q Consensus 339 ~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 418 (424)
+-|-||| ..-++..+|+|||+.|+|..||||+...++.|+|.| +.++.||.|++||+|
T Consensus 360 ~~i~vfT---PkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng-------------------~~v~l~~~l~~gd~v 417 (683)
T TIGR00691 360 EEIYVFT---PKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNG-------------------KIVPLDKELENGDVV 417 (683)
T ss_pred CceEEEC---CCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECC-------------------EECCCCccCCCCCEE
Confidence 7788888 335789999999999999999999999999999775 368999999999999
Q ss_pred EEEec
Q 014450 419 LFRFN 423 (424)
Q Consensus 419 ~~~f~ 423 (424)
+|-.+
T Consensus 418 ei~t~ 422 (683)
T TIGR00691 418 EIITG 422 (683)
T ss_pred EEEeC
Confidence 99764
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=2.4e-06 Score=78.52 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=60.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|-++|+.++|||+||-.|..+. -....|.+.|+.+...+++ ....+||.||..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs----~~~TvtSiepn~a~~r~gs-----------------~~~~LVD~PGH~--- 93 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS----HRGTVTSIEPNEATYRLGS-----------------ENVTLVDLPGHS--- 93 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC----ccCeeeeeccceeeEeecC-----------------cceEEEeCCCcH---
Confidence 3679999999999999999998331 1224677889999988877 448999999973
Q ss_pred Ccccchhhhhhhhh---hccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHI---REVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i---~~aD~il~Vvda~ 162 (424)
.+...++..+ +.+-+|++|||+.
T Consensus 94 ----rlR~kl~e~~~~~~~akaiVFVVDSa 119 (238)
T KOG0090|consen 94 ----RLRRKLLEYLKHNYSAKAIVFVVDSA 119 (238)
T ss_pred ----HHHHHHHHHccccccceeEEEEEecc
Confidence 3444444444 4799999999984
No 307
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=2.2e-06 Score=76.15 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=62.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc-ccc----CCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAA----NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~s----~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
.+.|.|+|+-||||||++.++- .... ... ..-.+|.--|.|.+.+.. ..+.|||.-|
T Consensus 17 ~y~vlIlgldnAGKttfLe~~K-t~~~~~~~~l~~~ki~~tvgLnig~i~v~~-----------------~~l~fwdlgG 78 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALK-TDFSKAYGGLNPSKITPTVGLNIGTIEVCN-----------------APLSFWDLGG 78 (197)
T ss_pred hhhheeeccccCCchhHHHHHH-HHHHhhhcCCCHHHeecccceeecceeecc-----------------ceeEEEEcCC
Confidence 4789999999999999999986 2211 111 122456666777777765 5699999998
Q ss_pred CCCCCCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
. +.+..-+-.....|+++++|+|+++++.
T Consensus 79 Q-------e~lrSlw~~yY~~~H~ii~viDa~~~eR 107 (197)
T KOG0076|consen 79 Q-------ESLRSLWKKYYWLAHGIIYVIDATDRER 107 (197)
T ss_pred h-------HHHHHHHHHHHHHhceeEEeecCCCHHH
Confidence 7 3444455566788999999999988654
No 308
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.6e-06 Score=85.70 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=89.4
Q ss_pred cEEEEEecCCCCchHHHHHhh--cCCCccccCCCCccccceEEEeecCCCcchhhc----------cccccccccCceEE
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV--ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS----------GLSKSQKAVPASVE 124 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~--g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~----------~~~~~~~~~~~~i~ 124 (424)
...|||-+|-||||||-..|+ |+.... +++.. |+-.-.-.+.||+. .-+--....+..+.
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~----AG~Vk----~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iN 84 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQE----AGTVK----GRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVN 84 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhh----cceee----eccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEe
Confidence 368999999999999999987 222111 11110 00000111122211 00001112246799
Q ss_pred EEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce-eeeccccccCCchhhhhhhhhcccHHHHHHHHHHHH
Q 014450 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI-VHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (424)
Q Consensus 125 lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~-~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~ 203 (424)
|+||||.-+++ +.+.+.+..+|..++|+||.....- ..-.-.+..+++++++ - +++
T Consensus 85 LLDTPGHeDFS-------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~---T-------------FiN 141 (528)
T COG4108 85 LLDTPGHEDFS-------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF---T-------------FIN 141 (528)
T ss_pred ccCCCCccccc-------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceE---E-------------Eee
Confidence 99999985544 4788888999999999999543110 0000001122333322 1 122
Q ss_pred hhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccc
Q 014450 204 KGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKP 259 (424)
Q Consensus 204 k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kp 259 (424)
|+- ..+..=.+||+.|.+.| +...+|..|+......++.++.+..+.
T Consensus 142 KlD-------R~~rdP~ELLdEiE~~L--~i~~~PitWPIG~gk~F~Gvy~l~~~~ 188 (528)
T COG4108 142 KLD-------REGRDPLELLDEIEEEL--GIQCAPITWPIGMGKDFKGVYHLYNDE 188 (528)
T ss_pred ccc-------cccCChHHHHHHHHHHh--CcceecccccccCCcccceeeeeccCE
Confidence 221 23334557888888888 666778889887766777555555553
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.1e-05 Score=78.40 Aligned_cols=164 Identities=21% Similarity=0.212 Sum_probs=88.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCC--CCccccceEEEe-----ecCC-Cc-----chhhccccccc-ccc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANF--PFCTIEPNVGIV-----AVPD-PR-----LHVLSGLSKSQ-KAV 119 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~--p~tT~~~~~~~~-----~~~~-~~-----~d~l~~~~~~~-~~~ 119 (424)
+...+||.||+---|||||..||+|--...-|.. -+.|+ ..|.. ..++ .+ ....+..+.+. ++
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitI--kLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l- 84 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITI--KLGYADAKIYKCPECYRPECYTTEPKCPNCGAETEL- 84 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEE--EeccccCceEeCCCCCCCcccccCCCCCCCCCCccE-
Confidence 4568999999999999999999996322111110 01111 11110 1110 00 00011111111 22
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce----eeecc-ccccCCchhhhhhhhhcccHHH
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI----VHVNG-KVDPKSDVDVINLELVFSDLDQ 194 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~----~~~~~-~~dp~~d~~~i~~el~~~~~~~ 194 (424)
-..+-|+|.||. +-++...|+-..-.|+.++|+.|.++-.- .|... .+-.++++- +..|++|.
T Consensus 85 ~R~VSfVDaPGH-------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~ii-----IvQNKIDl 152 (415)
T COG5257 85 VRRVSFVDAPGH-------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNII-----IVQNKIDL 152 (415)
T ss_pred EEEEEEeeCCch-------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEE-----EEecccce
Confidence 245889999996 56777778777778999999999775321 11000 000111111 12344443
Q ss_pred HHH-----HHHHHHhhccC--------CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 195 IEK-----RMEKLKKGKAK--------DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 195 i~~-----~~~~i~k~~~~--------~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+.+ ....+.+..+. -++||..+.|++.|++.|.+..|.
T Consensus 153 V~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 153 VSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred ecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 332 12222222221 236999999999999999999864
No 310
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=2.9e-06 Score=82.52 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=38.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc---ccCCC----CccccceEEEeecCCCcchhhccccccccccCceEEEEeC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---AANFP----FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~---~s~~p----~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDt 128 (424)
+-..+++|.+|||||||+|+|.+..... +|..- +||+... .+..+. .=.++||
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~--l~~l~~------------------gG~iiDT 223 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVE--LFPLPG------------------GGWIIDT 223 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEE--EEEcCC------------------CCEEEeC
Confidence 3478899999999999999999644433 33333 3443322 233321 1368999
Q ss_pred CCCCCC
Q 014450 129 AGLVKG 134 (424)
Q Consensus 129 pG~~~~ 134 (424)
||+-..
T Consensus 224 PGf~~~ 229 (301)
T COG1162 224 PGFRSL 229 (301)
T ss_pred CCCCcc
Confidence 999654
No 311
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=8.3e-06 Score=81.87 Aligned_cols=85 Identities=16% Similarity=0.189 Sum_probs=55.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC-------------------------------CCCccccceEEEeecCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------------------------------FPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~-------------------------------~p~tT~~~~~~~~~~~~~ 104 (424)
.++++++|++.+|||||+-+|+ -....+.. .-+.|++.....++.+
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLl-y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~-- 83 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLL-YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD-- 83 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhH-HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC--
Confidence 4799999999999999999998 32221111 1122222222222111
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
...+.++|+||.. .+......-+.+||+.++||||+..+
T Consensus 84 ---------------k~~~tIiDaPGHr-------dFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 84 ---------------KYNFTIIDAPGHR-------DFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred ---------------CceEEEeeCCchH-------HHHHHhhcchhhccEEEEEEECCCCc
Confidence 2569999999952 33445566678999999999998875
No 312
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.02 E-value=2.2e-05 Score=67.60 Aligned_cols=83 Identities=20% Similarity=0.292 Sum_probs=58.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
+...+|+++|.-||||||++..|.+.+...+.+ |.-.+...+...+ ...+.+||.-|.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g----------------~f~LnvwDiGGq-- 72 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDG----------------TFHLNVWDIGGQ-- 72 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecC----------------cEEEEEEecCCc--
Confidence 446899999999999999999999666543332 2222333444433 266999999997
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++..-+.+...+.|.+++|+|..+
T Consensus 73 -----r~IRpyWsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 73 -----RGIRPYWSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred -----cccchhhhhhhhccceEEEEEeCCc
Confidence 2333356677899999999999543
No 313
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.1e-05 Score=79.94 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=61.0
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...+++-|-|.|+--=|||||+-+|- +.....+..-+.|.+.-.-.++.++ +..++|+||||.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lR-ks~VAA~E~GGITQhIGAF~V~~p~----------------G~~iTFLDTPGH 211 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALR-KSSVAAGEAGGITQHIGAFTVTLPS----------------GKSITFLDTPGH 211 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHh-hCceehhhcCCccceeceEEEecCC----------------CCEEEEecCCcH
Confidence 34567899999999999999999998 4444444455666554444455554 366999999997
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.- +..+--+-..-+|.+++||-+.+.
T Consensus 212 aA-------F~aMRaRGA~vtDIvVLVVAadDG 237 (683)
T KOG1145|consen 212 AA-------FSAMRARGANVTDIVVLVVAADDG 237 (683)
T ss_pred HH-------HHHHHhccCccccEEEEEEEccCC
Confidence 32 222222334568999999988653
No 314
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.99 E-value=1.6e-05 Score=86.54 Aligned_cols=63 Identities=30% Similarity=0.231 Sum_probs=54.2
Q ss_pred CcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014450 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 418 (424)
Q Consensus 339 ~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 418 (424)
+-|-|||- + -+...+|+|||+.|+|+.||||+...|+.|+|= | +.+..+|.|++||+|
T Consensus 404 d~V~VfTP--k-G~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvn-----------------g--~~v~l~~~L~~GD~V 461 (743)
T PRK10872 404 DRVYVFTP--K-GDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIG-----------------G--RIVPFTYQLQMGDQI 461 (743)
T ss_pred CeEEEECC--C-CCeEEcCCCCcHHHHHHHHhHHHHhhceEEEEC-----------------C--EECCCCcCCCCCCEE
Confidence 66999992 1 148999999999999999999999999999743 5 369999999999999
Q ss_pred EEEec
Q 014450 419 LFRFN 423 (424)
Q Consensus 419 ~~~f~ 423 (424)
+|..+
T Consensus 462 eIits 466 (743)
T PRK10872 462 EIITQ 466 (743)
T ss_pred EEEeC
Confidence 99764
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.96 E-value=0.00036 Score=65.48 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=48.8
Q ss_pred Ccchhhhhhhhhhhcc--ccCCcEEEEEecCCCCchHHHHHhhcCCCcc-------ccCCCCccccceEEEe-ecCCCcc
Q 014450 37 GITTTSSRRRFSSASK--ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFPFCTIEPNVGIV-AVPDPRL 106 (424)
Q Consensus 37 ~~~~~~~~~~~~~~~~--~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~-------~s~~p~tT~~~~~~~~-~~~~~~~ 106 (424)
|.-.......+.+.+. ..-.++|.+||.++.|||||+|.|....... .-++|.||---..+.+ ...+
T Consensus 25 gyvGidtI~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~g--- 101 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKG--- 101 (336)
T ss_pred ccccHHHHHHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecc---
Confidence 4333333333333333 3446899999999999999999998433222 1134444432222222 2222
Q ss_pred hhhccccccccccCceEEEEeCCCCCCCC
Q 014450 107 HVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 107 d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
+.-++.++||||+.+..
T Consensus 102 ------------VklkltviDTPGfGDqI 118 (336)
T KOG1547|consen 102 ------------VKLKLTVIDTPGFGDQI 118 (336)
T ss_pred ------------eEEEEEEecCCCccccc
Confidence 22568999999996543
No 316
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.96 E-value=0.00012 Score=67.86 Aligned_cols=84 Identities=20% Similarity=0.192 Sum_probs=56.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||+|...+. ..... ..+..|.-+.....+.+++. ...+.++||+|..++.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~-~~~f~-~~y~ptied~y~k~~~v~~~---------------~~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFL-TGRFV-EDYDPTIEDSYRKELTVDGE---------------VCMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeec-ccccc-cccCCCccccceEEEEECCE---------------EEEEEEEcCCCcccCh
Confidence 4799999999999999999998 44332 22333433444455555542 2678899999953332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
. .--..++.+|+.++|.++++
T Consensus 66 ~-------~~~~~~~~~~gF~lVysitd 86 (196)
T KOG0395|consen 66 A-------MRDLYIRNGDGFLLVYSITD 86 (196)
T ss_pred H-------HHHHhhccCcEEEEEEECCC
Confidence 2 22344788899999988743
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.89 E-value=0.0002 Score=71.21 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.6
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+.+-.++|.++|..|.||||++|.|.+.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHh
Confidence 3366789999999999999999999965
No 318
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.89 E-value=1.7e-05 Score=68.13 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=63.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCcc-ccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
+..++-.|+|--++|||.|+..++ .+.. .++.|.|- .+.-..++.+.+.. ..+++|||+|.
T Consensus 9 syifkyiiigdmgvgkscllhqft-ekkf-madcphtigvefgtriievsgqk---------------iklqiwdtagq- 70 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFT-EKKF-MADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQ- 70 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHH-HHHH-hhcCCcccceecceeEEEecCcE---------------EEEEEeecccH-
Confidence 345788899999999999999999 5543 34455432 22223345554432 56899999997
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
+.+..-..+..|.|-..++|.|.......
T Consensus 71 ------erfravtrsyyrgaagalmvyditrrsty 99 (215)
T KOG0097|consen 71 ------ERFRAVTRSYYRGAAGALMVYDITRRSTY 99 (215)
T ss_pred ------HHHHHHHHHHhccccceeEEEEehhhhhh
Confidence 44445667788999999999998766543
No 319
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=3.6e-05 Score=76.91 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhcc----------ccccccccCceEEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------LSKSQKAVPASVEF 125 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~----------~~~~~~~~~~~i~l 125 (424)
..+|||+..-.+||||.-.+++ .- .+.+ ...|-+..+++..|+++. .-....|.++.+.+
T Consensus 37 irnigiiahidagktttteril-y~-------ag~~--~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinl 106 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERIL-YL-------AGAI--HSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINL 106 (753)
T ss_pred hhcceeEEEecCCCchhHHHHH-HH-------hhhh--hcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEee
Confidence 3589999999999999999987 11 1111 123444444444444331 11223566789999
Q ss_pred EeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HHHHHHh
Q 014450 126 VDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RMEKLKK 204 (424)
Q Consensus 126 vDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k 204 (424)
+||||.+++.- ..-.-+|--|.++.|+|+|....-.. + -+|...+...- +.-++++
T Consensus 107 idtpghvdf~l-------everclrvldgavav~dasagve~qt-------l---------tvwrqadk~~ip~~~fink 163 (753)
T KOG0464|consen 107 IDTPGHVDFRL-------EVERCLRVLDGAVAVFDASAGVEAQT-------L---------TVWRQADKFKIPAHCFINK 163 (753)
T ss_pred ecCCCcceEEE-------EHHHHHHHhcCeEEEEeccCCcccce-------e---------eeehhccccCCchhhhhhh
Confidence 99999987654 44455777899999999986432100 0 01111111111 2334455
Q ss_pred hccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhc-cceEEeccccc-cccCCCC-----C
Q 014450 205 GKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTM-KPIIYVANVAE-SDLADPG-----S 276 (424)
Q Consensus 205 ~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~-kpi~y~~nv~~-~~~~~~~-----~ 276 (424)
+. |.+.+.....+.|.+.|...+ ...+++..|..-+. .+.-..+ +-++.-||-.+ .+|..+. +
T Consensus 164 md-------k~~anfe~avdsi~ekl~ak~--l~l~lpi~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~nd 234 (753)
T KOG0464|consen 164 MD-------KLAANFENAVDSIEEKLGAKA--LKLQLPIGEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKND 234 (753)
T ss_pred hh-------hhhhhhhhHHHHHHHHhCCce--EEEEecccccccccchHHHHHHHhhccCCCCCCccccccCCcccccCC
Confidence 42 556667777777777773221 11134444444443 2222333 34444566543 2343220 1
Q ss_pred CcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHc
Q 014450 277 NPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASL 320 (424)
Q Consensus 277 ~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~ 320 (424)
.+..++..+. ...+.+.+++++.+-+..||+++
T Consensus 235 pel~e~~ae~-----------knal~~qlad~~~dfad~~ldef 267 (753)
T KOG0464|consen 235 PELAEELAEA-----------KNALCEQLADLDADFADKFLDEF 267 (753)
T ss_pred HHHHHHHHHH-----------HHHHHHHHhhccHHHHHHHHHHh
Confidence 1122333222 23355667777776666666654
No 320
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=97.86 E-value=1.6e-06 Score=73.66 Aligned_cols=149 Identities=18% Similarity=0.185 Sum_probs=84.1
Q ss_pred EEecCCCCchHHHHHhhcCCCccccCCC-CccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCccc
Q 014450 61 IVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (424)
Q Consensus 61 ivG~pn~GKSTL~NaL~g~~~~~~s~~p-~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~ 139 (424)
++|-+.+|||.|+-+.- ......+++- ...+|.....+.+++.. ..+++|||+|.-
T Consensus 2 llgds~~gktcllir~k-dgafl~~~fistvgid~rnkli~~~~~k---------------vklqiwdtagqe------- 58 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK-DGAFLAGNFISTVGIDFRNKLIDMDDKK---------------VKLQIWDTAGQE------- 58 (192)
T ss_pred ccccCccCceEEEEEec-cCceecCceeeeeeeccccceeccCCcE---------------EEEEEeeccchH-------
Confidence 67999999999987665 3323333322 22334444445555532 679999999984
Q ss_pred chhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchh--hhhhhhhcccHHHHHHHH------HHHHhhc--cCC
Q 014450 140 GLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD--VINLELVFSDLDQIEKRM------EKLKKGK--AKD 209 (424)
Q Consensus 140 ~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~--~i~~el~~~~~~~i~~~~------~~i~k~~--~~~ 209 (424)
.+..-+.+..|+||+++++.|..+..++....++...+.++. .+.--|..|+.|....+. +++.+.. +.-
T Consensus 59 rfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfm 138 (192)
T KOG0083|consen 59 RFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFM 138 (192)
T ss_pred HHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCce
Confidence 344466778899999999999877665433322221111100 000113345555422211 1222211 111
Q ss_pred CcchhhHHHHHHHHHHHHHHHhC
Q 014450 210 SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 210 ~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..|||+|-|++..+-.|.+.+.+
T Consensus 139 etsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 139 ETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred eccccccccHhHHHHHHHHHHHH
Confidence 25899999999877777766654
No 321
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.86 E-value=3.6e-06 Score=75.12 Aligned_cols=151 Identities=15% Similarity=0.078 Sum_probs=86.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..+++.|||--++||||++.+.+ .....-...-....+.....+.+.++ ...+.+|||+|.-+
T Consensus 19 ~aiK~vivGng~VGKssmiqryC-kgifTkdykktIgvdflerqi~v~~E---------------dvr~mlWdtagqeE- 81 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYC-KGIFTKDYKKTIGVDFLERQIKVLIE---------------DVRSMLWDTAGQEE- 81 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHh-ccccccccccccchhhhhHHHHhhHH---------------HHHHHHHHhccchh-
Confidence 36899999999999999999999 43322111111111211122222221 25578999999733
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc----ccCCchhhhhhhhhcccHHHHHHHH------HHHHh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV----DPKSDVDVINLELVFSDLDQIEKRM------EKLKK 204 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~----dp~~d~~~i~~el~~~~~~~i~~~~------~~i~k 204 (424)
+..-..+..|.|.+-++|+...+..++..+..+. ....+|+.+ ++.|++|.++... +.+.+
T Consensus 82 ------fDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV---~vqNKIDlveds~~~~~evE~lak 152 (246)
T KOG4252|consen 82 ------FDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTV---FVQNKIDLVEDSQMDKGEVEGLAK 152 (246)
T ss_pred ------HHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeE---EeeccchhhHhhhcchHHHHHHHH
Confidence 3234457789999999998877766543322221 123445555 6677777776511 11111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ....|+++..|+...+..+.+.+.
T Consensus 153 ~l~~RlyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 153 KLHKRLYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred HhhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 111 112567777777777666665553
No 322
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=97.81 E-value=2.9e-05 Score=64.59 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=48.1
Q ss_pred eccccccccCCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHc---------------------C--CCHHHH------
Q 014450 263 VANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELT---------------------E--LPSEER------ 313 (424)
Q Consensus 263 ~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~---------------------~--l~~e~~------ 313 (424)
++||.| .+.+ +++++++++.. .+..+||+||..|..|. + |++.++
T Consensus 1 AaNK~D--~~~a--~~ni~kl~~~~--~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I 74 (109)
T PF08438_consen 1 AANKAD--LPAA--DENIEKLKEKY--PDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKI 74 (109)
T ss_dssp EEE-GG--G-S---HHHHHHHHHHH--TT-EEEEE-HHHHHHHHS-SSS----S----------------------TTHH
T ss_pred CCcccc--cccc--HhHHHHHHHhC--CCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHH
Confidence 468885 4443 67788888744 45679999999999751 1 344332
Q ss_pred HH-HHHHcCCCCchhHHHHH-HHHhhcCcEEEEecC
Q 014450 314 VE-YLASLGVSESGLGNLIR-STYSLLGLRTYFTSG 347 (424)
Q Consensus 314 ~~-~l~~~gl~~~~l~~li~-~~~~~L~li~~fT~g 347 (424)
++ +|..+| .+|++++|. ++|++|++|+||++.
T Consensus 75 ~~~vl~~~g--~TGVq~aln~AVf~ll~~i~VyPVe 108 (109)
T PF08438_consen 75 RDNVLERYG--STGVQEALNRAVFDLLGMIVVYPVE 108 (109)
T ss_dssp HHHHTSSSS--S-SHHHHHHHHHHTTS-EEEEEEES
T ss_pred HHHHHHhcC--CchHHHHHHHHHHHhcCCeeEeccC
Confidence 23 677777 489999997 556999999999974
No 323
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.81 E-value=8.1e-05 Score=62.99 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=51.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
.++++||..++|||||+|+|-|+..- +--| --+++.+ =-.+||||-.-..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----ykKT-----QAve~~d-------------------~~~IDTPGEy~~~- 51 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----YKKT-----QAVEFND-------------------KGDIDTPGEYFEH- 51 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----hccc-----ceeeccC-------------------ccccCCchhhhhh-
Confidence 47999999999999999999965432 1111 1123322 1258999964221
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
..+-...+....++|++++|-.+.++.+
T Consensus 52 --~~~Y~aL~tt~~dadvi~~v~~and~~s 79 (148)
T COG4917 52 --PRWYHALITTLQDADVIIYVHAANDPES 79 (148)
T ss_pred --hHHHHHHHHHhhccceeeeeecccCccc
Confidence 2333455667789999999988877643
No 324
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3.3e-05 Score=81.64 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=67.2
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccc--------eEEEeecCC--Ccch--------------
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP--------NVGIVAVPD--PRLH-------------- 107 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~--------~~~~~~~~~--~~~d-------------- 107 (424)
..+..++|+|.|.+|+||||++||++ .+..-.++...||-.. ..+..-.++ +..|
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL-~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAML-HKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHH-HHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 34456899999999999999999999 5444444444444211 111111111 1111
Q ss_pred ------hhcccccccc---ccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 108 ------VLSGLSKSQK---AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 108 ------~l~~~~~~~~---~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
-|..+|.|+. +....+.++|.||+--+ .......-+...++|+.++|+.+-.
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~----se~tswid~~cldaDVfVlV~NaEn 244 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD----SELTSWIDSFCLDADVFVLVVNAEN 244 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCc----hhhhHHHHHHhhcCCeEEEEecCcc
Confidence 1344555554 44457999999999432 3344455677889999999999843
No 325
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.00047 Score=68.93 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=26.3
Q ss_pred hhhccccCCcEEEEEecCCCCchHHHHHhhcC
Q 014450 48 SSASKISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 48 ~~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
++..+..-.+.+-++|..|.|||||+|.|.+.
T Consensus 13 r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 13 RKSVKKGFDFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred HHHHhcCCceEEEEecCCCccHHHHHHHHHhh
Confidence 33445556789999999999999999999965
No 326
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=5.1e-05 Score=78.52 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+++-|.++|+---|||||+-.+- +........-+.|.+.-...++.+.. ....+.|+||||.
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR-~t~Va~~EaGGITQhIGA~~v~~~~~--------------~~~~itFiDTPGH--- 65 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIR-KTNVAAGEAGGITQHIGAYQVPLDVI--------------KIPGITFIDTPGH--- 65 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHh-cCccccccCCceeeEeeeEEEEeccC--------------CCceEEEEcCCcH---
Confidence 46789999999999999999998 44333344445565443333443210 0146999999997
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.+.+.--+-..-+|++++||++.+.
T Consensus 66 ----eAFt~mRaRGa~vtDIaILVVa~dDG 91 (509)
T COG0532 66 ----EAFTAMRARGASVTDIAILVVAADDG 91 (509)
T ss_pred ----HHHHHHHhcCCccccEEEEEEEccCC
Confidence 22322222334568999999999653
No 327
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.77 E-value=4e-05 Score=74.88 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
.++|.++|.+|+|||||+|+|.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~ 29 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDI 29 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccc
Confidence 47899999999999999999995443
No 328
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.72 E-value=4.6e-05 Score=75.21 Aligned_cols=25 Identities=44% Similarity=0.621 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.....|+|+|+||+|||||++.|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999874
No 329
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00016 Score=73.30 Aligned_cols=84 Identities=23% Similarity=0.266 Sum_probs=65.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCC--ccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+-|+..|+---|||||+.+++|... .+-..+-++|+|......+.++ ..+.|+|+||.
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-----------------~~~~fIDvpgh--- 60 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-----------------GVMGFIDVPGH--- 60 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-----------------CceEEeeCCCc---
Confidence 3578888888999999999996443 3444567899888777777776 46999999998
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
+.+....++.+...|..++|||+.+.
T Consensus 61 ----~~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 61 ----PDFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred ----HHHHHHHHhhhcCCceEEEEEeCccC
Confidence 34455677777889999999999654
No 330
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.64 E-value=8e-05 Score=69.13 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+++|+|+|.+|+|||||++++.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 331
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.63 E-value=0.00014 Score=69.56 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+.-|.+||..|+||||++.+|.+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~ 41 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNS 41 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHH
Confidence 4457889999999999999999985
No 332
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.61 E-value=6e-05 Score=67.29 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCc----cccC-CCCcccc------ceEEEeecCCCcc---------hhhccccc--c
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKA----QAAN-FPFCTIE------PNVGIVAVPDPRL---------HVLSGLSK--S 115 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~----~~s~-~p~tT~~------~~~~~~~~~~~~~---------d~l~~~~~--~ 115 (424)
-+.++|+.|+|||||++.+.+.... ...+ +-....+ .....+.+.+.++ +.+.+++. .
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 4689999999999999999843211 0000 0001111 1112233332110 11211111 0
Q ss_pred ccccCceEEEEeCCCCCCCCCcccch-hhhhhhhhhccceEEEEeecC
Q 014450 116 QKAVPASVEFVDIAGLVKGASQGEGL-GNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~-~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+....+.+|+||||+.++.+.-..+ ....+...-++|.++.|+|+.
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~ 129 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAK 129 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhh
Confidence 11224678999999997654322111 122345566799999999984
No 333
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=1.2e-05 Score=70.56 Aligned_cols=151 Identities=14% Similarity=0.123 Sum_probs=80.2
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+...+|-++|||||++-..| .......=.....+|....++.+....-+. ..+--...+++|||+|.-+
T Consensus 11 kfLaLGDSGVGKTs~Ly~YT-D~~F~~qFIsTVGIDFreKrvvY~s~gp~g------~gr~~rihLQlWDTAGQER---- 79 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYT-DGKFNTQFISTVGIDFREKRVVYNSSGPGG------GGRGQRIHLQLWDTAGQER---- 79 (219)
T ss_pred HHHhhccCCCCceEEEEEec-CCcccceeEEEeecccccceEEEeccCCCC------CCcceEEEEeeeccccHHH----
Confidence 45567999999999999988 443322111122233333333222111000 1111225689999999843
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHHHHHHHH---hhc--
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEKRMEKLK---KGK-- 206 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~~~~~i~---k~~-- 206 (424)
+..-+.+..|+|=..|+++|...+.++..+.++...+ ++-+++ +..|+.|....+...-. ...
T Consensus 80 ---FRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDiv---lcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 80 ---FRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIV---LCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred ---HHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEE---EEcCccchhhhhhhhHHHHHHHHHH
Confidence 3334455678888899999998887765554443222 222333 45666665544332211 111
Q ss_pred ---cCCCcchhhHHHHHHHHHH
Q 014450 207 ---AKDSQSKLKEDAEKAALEK 225 (424)
Q Consensus 207 ---~~~~~Sak~~~~~~~ll~~ 225 (424)
+....||-++.|+...++.
T Consensus 154 yglPYfETSA~tg~Nv~kave~ 175 (219)
T KOG0081|consen 154 YGLPYFETSACTGTNVEKAVEL 175 (219)
T ss_pred hCCCeeeeccccCcCHHHHHHH
Confidence 1112477777766654443
No 334
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.58 E-value=8.5e-05 Score=70.88 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=20.8
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhh--ccceEEEEeecCCC
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIR--EVDSILQVVRCFED 164 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~--~aD~il~Vvda~~~ 164 (424)
.+.++||||.++.-.. ...+..+...+. ..=++++++|+..-
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~~~ 135 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSSFC 135 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GGG-
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecccc
Confidence 5899999999753211 122233444443 34578999998643
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.55 E-value=0.00016 Score=69.06 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....|||.|.||||||||+++|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 46799999999999999999997
No 336
>PRK01889 GTPase RsgA; Reviewed
Probab=97.52 E-value=5.9e-05 Score=76.23 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA 85 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s 85 (424)
+-.++++|.||+|||||+|+|+|.....++
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhccccee
Confidence 458999999999999999999975554433
No 337
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.49 E-value=0.00035 Score=65.07 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.9
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhc
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..+.|+++|++|+|||||++.|..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999984
No 338
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.00018 Score=63.74 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=59.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..-++.+.|.-|||||||++.|-....+. ..-|.+|....+.+++ ..++-+|.-|...
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q----hvPTlHPTSE~l~Ig~-----------------m~ftt~DLGGH~q- 76 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ----HVPTLHPTSEELSIGG-----------------MTFTTFDLGGHLQ- 76 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccc----cCCCcCCChHHheecC-----------------ceEEEEccccHHH-
Confidence 34689999999999999999998433332 3346777766666665 6688899988521
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
-...+...+..||++++.|||.
T Consensus 77 ------Arr~wkdyf~~v~~iv~lvda~ 98 (193)
T KOG0077|consen 77 ------ARRVWKDYFPQVDAIVYLVDAY 98 (193)
T ss_pred ------HHHHHHHHHhhhceeEeeeehh
Confidence 1234456778899999999984
No 339
>PTZ00099 rab6; Provisional
Probab=97.47 E-value=7.3e-05 Score=67.94 Aligned_cols=102 Identities=18% Similarity=0.104 Sum_probs=60.0
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHH
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQI 195 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i 195 (424)
.++.||||||...... .....++.||++|+|+|+++..++..+..+... ...++++ ++.++.|..
T Consensus 29 v~l~iwDt~G~e~~~~-------~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~pii---lVgNK~DL~ 98 (176)
T PTZ00099 29 VRLQLWDTAGQERFRS-------LIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIA---LVGNKTDLG 98 (176)
T ss_pred EEEEEEECCChHHhhh-------ccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE---EEEECcccc
Confidence 6799999999854322 233457899999999999886543221111100 0122222 445655543
Q ss_pred HH------HHHHHHhhccC--CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 196 EK------RMEKLKKGKAK--DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 196 ~~------~~~~i~k~~~~--~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+. ......+.... ..+||+++.++.++++.+.+.+++
T Consensus 99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 21 11111111111 236999999999999999999976
No 340
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.44 E-value=0.00052 Score=60.04 Aligned_cols=93 Identities=16% Similarity=0.216 Sum_probs=62.6
Q ss_pred hccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 50 ~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
.+++....+|.++|.-++|||.++..|+-+....-....-|--|...+.+..+.. ...++.|.||+
T Consensus 3 ~~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg--------------arE~l~lyDTa 68 (198)
T KOG3883|consen 3 NAKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG--------------AREQLRLYDTA 68 (198)
T ss_pred chhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC--------------hhheEEEeecc
Confidence 3466778999999999999999999998444443333333444555565554432 23789999999
Q ss_pred CCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
|+..+.. .+ -...+.-+|+.++|.+..
T Consensus 69 Glq~~~~---eL---prhy~q~aDafVLVYs~~ 95 (198)
T KOG3883|consen 69 GLQGGQQ---EL---PRHYFQFADAFVLVYSPM 95 (198)
T ss_pred cccCchh---hh---hHhHhccCceEEEEecCC
Confidence 9965421 11 123356689999998863
No 341
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.43 E-value=0.00067 Score=66.31 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
....-|+|+|.||||||||++.|.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4468899999999999999998874
No 342
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.38 E-value=0.00043 Score=75.59 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=52.4
Q ss_pred CcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014450 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 418 (424)
Q Consensus 339 ~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 418 (424)
+-|-|||- .-+...+|+|||+.|+|+.||||+...-+-|+|= |+ .+-.+|.|++||+|
T Consensus 386 d~v~VfTP---~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVN-----------------g~--~vpL~~~L~~Gd~V 443 (702)
T PRK11092 386 DEIYVFTP---EGRIVELPAGATPVDFAYAVHTDIGHACVGARVD-----------------RQ--PYPLSQPLTSGQTV 443 (702)
T ss_pred ceEEEECC---CCCEEeCCCCCchhhhhHhhCchhhceeEEEEEC-----------------CE--ECCCCccCCCCCEE
Confidence 66888883 2367889999999999999999998877777754 54 58899999999999
Q ss_pred EEEec
Q 014450 419 LFRFN 423 (424)
Q Consensus 419 ~~~f~ 423 (424)
+|..+
T Consensus 444 eIiT~ 448 (702)
T PRK11092 444 EIITA 448 (702)
T ss_pred EEEeC
Confidence 99754
No 343
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.36 E-value=0.00057 Score=70.35 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCc-----------cccceEEEeecCCCcchh--hc-ccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFC-----------TIEPNVGIVAVPDPRLHV--LS-GLSKS 115 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~t-----------T~~~~~~~~~~~~~~~d~--l~-~~~~~ 115 (424)
+..|+++|.+||||||+...|. |...+.++.-++- .+ .....+...+. .|. ++ +.+.-
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~-~~vp~~~~~~~-~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATK-ARIPFYGSYTE-SDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhc-cCCeEEeecCC-CCHHHHHHHHHHH
Confidence 4679999999999999999997 3333333332221 11 00000100000 000 00 00000
Q ss_pred ccccCceEEEEeCCCCCCCCCcccchhhhhhh--hhhccceEEEEeecCCC
Q 014450 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLS--HIREVDSILQVVRCFED 164 (424)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~--~i~~aD~il~Vvda~~~ 164 (424)
-+-....++|+||||-... .+.+..+... .....|.+++|+|+...
T Consensus 178 ~~~~~~DvViIDTaGr~~~---d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQ---EDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred HHhCCCCEEEEECCCCCcc---hHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 0012367999999996432 2334433322 23457899999998643
No 344
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=97.34 E-value=0.00028 Score=76.09 Aligned_cols=63 Identities=25% Similarity=0.228 Sum_probs=51.9
Q ss_pred CcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014450 339 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 418 (424)
Q Consensus 339 ~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 418 (424)
+-+.||| |+- +-..+|+|||+.|+|+.||||+...-+-|+| .| |.+..+|.|+.||+|
T Consensus 387 d~VyvfT--PkG-~vi~LP~GatplDFAY~vHt~iG~~c~gAkV-----------------nG--~ivpl~~~Lk~Gd~V 444 (701)
T COG0317 387 DRVYVFT--PKG-KVIDLPKGATPLDFAYAVHTDIGHRCIGAKV-----------------NG--RIVPLTTKLQTGDQV 444 (701)
T ss_pred ceEEEEC--CCC-CEEeCCCCCcchhhhhhhhchhcceeeEEEE-----------------CC--EEeccceecCCCCEE
Confidence 5678888 333 7899999999999999999999766666663 36 368999999999999
Q ss_pred EEEec
Q 014450 419 LFRFN 423 (424)
Q Consensus 419 ~~~f~ 423 (424)
+|-++
T Consensus 445 EIit~ 449 (701)
T COG0317 445 EIITS 449 (701)
T ss_pred EEEeC
Confidence 99764
No 345
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0019 Score=63.69 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=57.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccc-----cceEEEeecCCCcchhhccccccccc---cCceEEEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTI-----EPNVGIVAVPDPRLHVLSGLSKSQKA---VPASVEFV 126 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~-----~~~~~~~~~~~~~~d~l~~~~~~~~~---~~~~i~lv 126 (424)
.+++|++|+-.+|||||..+|..-. .+.....|+.|- |--...+.++ .|.++ .+-|+.|+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~-----------~parLpq~e~lq~tlv 75 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVL-----------SPARLPQGEQLQFTLV 75 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecc-----------cccccCccccceeEEE
Confidence 3799999999999999999997321 122222333332 2111111111 12222 24678999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
|+||. .++.+..+....--|+.++|+|+...
T Consensus 76 DCPGH-------asLIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 76 DCPGH-------ASLIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred eCCCc-------HHHHHHHHhhhheeeeeeEEEehhcc
Confidence 99997 35666677777778999999998653
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.29 E-value=0.00077 Score=64.67 Aligned_cols=90 Identities=20% Similarity=0.116 Sum_probs=54.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc-cc-cCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QA-ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~-s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..+.++++|.+|+|||+|+|.++..... .. +.+++-|...+.-.+ ...+.++|.||+.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v--------------------~~~~~~vDlPG~~ 194 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV--------------------GKSWYEVDLPGYG 194 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec--------------------cceEEEEecCCcc
Confidence 4589999999999999999999943332 22 236666655444332 2458999999953
Q ss_pred CCC--C-cccchhh---hhhhhhhccceEEEEeecCCC
Q 014450 133 KGA--S-QGEGLGN---KFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 133 ~~~--~-~~~~~~~---~~l~~i~~aD~il~Vvda~~~ 164 (424)
... . ..+.+.+ .++-.-++-=-+++++|++-+
T Consensus 195 ~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~ 232 (320)
T KOG2486|consen 195 RAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVP 232 (320)
T ss_pred cccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCC
Confidence 211 0 0122333 333222333345677788654
No 347
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.24 E-value=0.00021 Score=66.73 Aligned_cols=87 Identities=21% Similarity=0.217 Sum_probs=64.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
+..||.+.|++|+||||+=..+..+..+.-...++.|+|...+.+..-+ +-.+.+||.-|.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG----------------nl~LnlwDcGgq--- 63 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG----------------NLVLNLWDCGGQ--- 63 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh----------------hheeehhccCCc---
Confidence 3468999999999999998887755555555668889888777765543 255889999987
Q ss_pred CCcccchhhhhhh-----hhhccceEEEEeecCCC
Q 014450 135 ASQGEGLGNKFLS-----HIREVDSILQVVRCFED 164 (424)
Q Consensus 135 ~~~~~~~~~~~l~-----~i~~aD~il~Vvda~~~ 164 (424)
+.+.+.++. ..++++++++|.|++.+
T Consensus 64 ----e~fmen~~~~q~d~iF~nV~vli~vFDves~ 94 (295)
T KOG3886|consen 64 ----EEFMENYLSSQEDNIFRNVQVLIYVFDVESR 94 (295)
T ss_pred ----HHHHHHHHhhcchhhheeheeeeeeeeccch
Confidence 333333332 46889999999999765
No 348
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00075 Score=71.28 Aligned_cols=91 Identities=22% Similarity=0.335 Sum_probs=60.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC-------CC---------CccccceEEEeecCCCcchhhcccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------FP---------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~-------~p---------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..+|+++|+-..|||+|+..|.++.....+. |+ ++++..+.-.+-..| .+..
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D------------~~~K 195 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSD------------SKGK 195 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEec------------CcCc
Confidence 3689999999999999999999655432210 00 112222221221111 1222
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
..-+.++||||.+.+.+ ++.+.++.+|++++|+|+.+.-
T Consensus 196 S~l~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGV 234 (971)
T KOG0468|consen 196 SYLMNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGV 234 (971)
T ss_pred eeeeeeecCCCcccchH-------HHHHHhhhcceEEEEEEcccCc
Confidence 35588999999987654 7778899999999999997654
No 349
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.21 E-value=0.00097 Score=68.04 Aligned_cols=96 Identities=17% Similarity=0.171 Sum_probs=57.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccce-EEEeecCCCcchh---hccccccccccCceEEEEeCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHV---LSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~-~~~~~~~~~~~d~---l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
.+||||-+---|||||+.+|+.+...--. .... ...+.-.|-...+ +-.-...-.|.+..|.++||||..
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~------~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHA 79 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFRE------REEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHA 79 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhcccccc------ccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcC
Confidence 58999999999999999999943321111 0000 0111111100000 111112234455789999999997
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
++.. ..-.-+.-+|.++++|||++.+
T Consensus 80 DFGG-------EVERvl~MVDgvlLlVDA~EGp 105 (603)
T COG1217 80 DFGG-------EVERVLSMVDGVLLLVDASEGP 105 (603)
T ss_pred Cccc-------hhhhhhhhcceEEEEEEcccCC
Confidence 6655 4444456689999999998864
No 350
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.0011 Score=57.21 Aligned_cols=80 Identities=19% Similarity=0.279 Sum_probs=55.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|..+|..++||||++-.|.-+... ...| |.-.++..+++.+ ..+.++|.-|.-
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~--~~ip--TvGFnvetVtykN-----------------~kfNvwdvGGqd--- 72 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIP--TVGFNVETVTYKN-----------------VKFNVWDVGGQD--- 72 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc--cccc--ccceeEEEEEeee-----------------eEEeeeeccCch---
Confidence 689999999999999999999833221 1112 3334555566655 779999999972
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+..-+.......-++++|+|+.+
T Consensus 73 ----~iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 73 ----KIRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred ----hhhHHHHhhccCCceEEEEEeccc
Confidence 222244455678899999999854
No 351
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00074 Score=70.54 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=55.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCC-------Ccccc--ceEEEeecCC---Ccchh-----hccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIE--PNVGIVAVPD---PRLHV-----LSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-------~tT~~--~~~~~~~~~~---~~~d~-----l~~~~~~~~~ 118 (424)
....+++|+.++|||||+-.|+ .....++..- +.+.. .....+.++. +|... =...|.+.
T Consensus 177 ~l~lvv~GhVdaGKSTLmG~lL-ydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~-- 253 (603)
T KOG0458|consen 177 HLNLVVLGHVDAGKSTLMGHLL-YDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK-- 253 (603)
T ss_pred ceEEEEEeccccchhhhhhHHH-HHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC--
Confidence 4789999999999999999997 3322111000 00000 0000111111 00000 00112222
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
...++|+|+||.-++.+ .+.+-+..||+.++||||+....
T Consensus 254 -~~~~tliDaPGhkdFi~-------nmi~g~sqaD~avLvvd~s~~~F 293 (603)
T KOG0458|consen 254 -SKIVTLIDAPGHKDFIP-------NMISGASQADVAVLVVDASTGEF 293 (603)
T ss_pred -ceeEEEecCCCccccch-------hhhccccccceEEEEEECCcchh
Confidence 25699999999644433 55666788999999999987654
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.00045 Score=71.59 Aligned_cols=77 Identities=22% Similarity=0.331 Sum_probs=54.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
.++-|++||+||.|||||+..|+ .. +...|++-..|.+++-... ...+.|+.+|.-
T Consensus 68 PPfIvavvGPpGtGKsTLirSlV-rr------~tk~ti~~i~GPiTvvsgK--------------~RRiTflEcp~D--- 123 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLV-RR------FTKQTIDEIRGPITVVSGK--------------TRRITFLECPSD--- 123 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHH-HH------HHHhhhhccCCceEEeecc--------------eeEEEEEeChHH---
Confidence 45678899999999999999998 32 2334666666665543211 146899999832
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+++..-.+-||++|+++|+.
T Consensus 124 -------l~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 124 -------LHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred -------HHHHHhHHHhhheeEEEeccc
Confidence 236666677899999999973
No 353
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.03 E-value=0.0025 Score=72.20 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=47.7
Q ss_pred CchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhcccc---ccccccCceEEEEeCCCCCCCCCcccchhhh
Q 014450 68 GKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS---KSQKAVPASVEFVDIAGLVKGASQGEGLGNK 144 (424)
Q Consensus 68 GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~---~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~ 144 (424)
+||||+-+|.+... .....-+.|.+.-...++.+. ....+.-+ ...+..-..+.||||||... +...
T Consensus 473 ~KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~--~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-------F~~l 542 (1049)
T PRK14845 473 HNTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDV--IKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-------FTSL 542 (1049)
T ss_pred ccccHHHHHhCCCc-ccccCCCceeccceEEEEecc--cccccccccccccccCCcCcEEEEECCCcHH-------HHHH
Confidence 59999999995444 333344566554333344332 11111100 00011123599999999622 2222
Q ss_pred hhhhhhccceEEEEeecCC
Q 014450 145 FLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 145 ~l~~i~~aD~il~Vvda~~ 163 (424)
.....+.+|++++|+|+++
T Consensus 543 r~~g~~~aDivlLVVDa~~ 561 (1049)
T PRK14845 543 RKRGGSLADLAVLVVDINE 561 (1049)
T ss_pred HHhhcccCCEEEEEEECcc
Confidence 2334577999999999975
No 354
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0028 Score=63.06 Aligned_cols=106 Identities=20% Similarity=0.277 Sum_probs=61.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCC--ccccCCCCccccceEEEee------cCCCc--------chhhc--------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVA------VPDPR--------LHVLS-------- 110 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~--~~~s~~p~tT~~~~~~~~~------~~~~~--------~d~l~-------- 110 (424)
..+-|.++|.-..||||++|-|+++.. ..+++.|.|-+ -...+. +++.. ...|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~--Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDR--FIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcce--eEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 357899999999999999999996543 34555553322 111111 11111 11111
Q ss_pred c---ccccccccCceEEEEeCCCCCCCCCcccchh---hhhh-hhhhccceEEEEeecCC
Q 014450 111 G---LSKSQKAVPASVEFVDIAGLVKGASQGEGLG---NKFL-SHIREVDSILQVVRCFE 163 (424)
Q Consensus 111 ~---~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~---~~~l-~~i~~aD~il~Vvda~~ 163 (424)
. .--|..+. .++.+|||||+..+....-..+ +..+ -.+..||.|+++.|+..
T Consensus 135 Rf~csqmp~~vL-e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK 193 (532)
T KOG1954|consen 135 RFMCSQLPNQVL-ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK 193 (532)
T ss_pred HHHHhcCChhhh-hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh
Confidence 1 01122222 4589999999987765422222 2223 34678999999999854
No 355
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.94 E-value=0.00052 Score=63.17 Aligned_cols=87 Identities=21% Similarity=0.250 Sum_probs=58.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..|++|||-.++|||+|+-..+ .......-.|... |.....+.+++.+ +..+.+|||+|..+..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t-~~~fp~~yvPTVF-dnys~~v~V~dg~--------------~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT-TNAFPEEYVPTVF-DNYSANVTVDDGK--------------PVELGLWDTAGQEDYD 67 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec-cCcCcccccCeEE-ccceEEEEecCCC--------------EEEEeeeecCCCcccc
Confidence 4799999999999999999999 5544444344333 5555666665222 3668999999985432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
. + +-+ ...++|++|.+.+..++.
T Consensus 68 r----l--Rpl-sY~~tdvfl~cfsv~~p~ 90 (198)
T KOG0393|consen 68 R----L--RPL-SYPQTDVFLLCFSVVSPE 90 (198)
T ss_pred c----c--ccc-CCCCCCEEEEEEEcCChh
Confidence 1 1 112 467889998887764443
No 356
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.94 E-value=0.00074 Score=62.54 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=19.2
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..|++||.+||||||.+-.|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLA 22 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLA 22 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHH
Confidence 468999999999999999987
No 357
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.92 E-value=0.0049 Score=56.45 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|++.|.||||||||+..++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~ 34 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTL 34 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHH
Confidence 3799999999999999999987
No 358
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.90 E-value=0.0026 Score=61.85 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.3
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
......|||.|.||||||||+.+|.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHH
Confidence 3456799999999999999999997
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0011 Score=67.22 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+-.++++|.|||||||++..|.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999983
No 360
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0011 Score=57.52 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=56.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|-+.|.-|+||+|++=.|--.... .+.| |+..++..+++.+ -.+.+||.-|...
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv--ttkP--tigfnve~v~yKN-----------------Lk~~vwdLggqtS- 74 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV--TTKP--TIGFNVETVPYKN-----------------LKFQVWDLGGQTS- 74 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc--ccCC--CCCcCcccccccc-----------------ccceeeEccCccc-
Confidence 3578999999999999988777523222 2222 2233444444433 4588999988632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
+.--+.....+.|++++|||.++...
T Consensus 75 ------irPyWRcYy~dt~avIyVVDssd~dr 100 (182)
T KOG0072|consen 75 ------IRPYWRCYYADTDAVIYVVDSSDRDR 100 (182)
T ss_pred ------ccHHHHHHhcccceEEEEEeccchhh
Confidence 22255667788999999999987654
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0017 Score=65.95 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+|+|.+||||||++..|+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999997
No 362
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.78 E-value=0.0026 Score=56.12 Aligned_cols=20 Identities=50% Similarity=0.919 Sum_probs=18.5
Q ss_pred EEEEecCCCCchHHHHHhhc
Q 014450 59 AGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g 78 (424)
|+++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999973
No 363
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.75 E-value=0.0035 Score=62.43 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+++|.+|+||||++..|.+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 56899999999999999999984
No 364
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.74 E-value=0.013 Score=61.46 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+|+|-.|+|||||+-+|++......- | +..-.+.+|- -+.|.. ....++||..-.
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~V--P-----~rl~~i~IPa--------dvtPe~---vpt~ivD~ss~~--- 67 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAV--P-----RRLPRILIPA--------DVTPEN---VPTSIVDTSSDS--- 67 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccc--c-----ccCCccccCC--------ccCcCc---CceEEEeccccc---
Confidence 579999999999999999999954432111 1 1111111111 011221 337899997321
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
.-.......++.||++..|..+.++..
T Consensus 68 ----~~~~~l~~EirkA~vi~lvyavd~~~T 94 (625)
T KOG1707|consen 68 ----DDRLCLRKEIRKADVICLVYAVDDEST 94 (625)
T ss_pred ----chhHHHHHHHhhcCEEEEEEecCChHH
Confidence 112356778999999999988877554
No 365
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.69 E-value=0.001 Score=60.13 Aligned_cols=42 Identities=33% Similarity=0.357 Sum_probs=30.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEE
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~ 98 (424)
..|+|+|++|||||||++.|.+.........+.+|+.|..|.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 358999999999999999999543333334456777666554
No 366
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.69 E-value=0.0036 Score=44.98 Aligned_cols=51 Identities=33% Similarity=0.393 Sum_probs=44.8
Q ss_pred ceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 352 ~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
++|.+++|+|+.+++..+|.++.+.++.|.+.+ +.++.+|.+++||.|+|-
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~-------------------~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLGKGFIGALVNG-------------------QLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHHhheEEEEECC-------------------EECCCCcCcCCCCEEEEe
Confidence 688899999999999999999999999888664 257899999999998874
No 367
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0045 Score=63.77 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.|++||.+|+||||+++.|++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=96.53 E-value=0.0056 Score=61.34 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+++|.||+||||++..|.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 5689999999999999888876
No 369
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.52 E-value=0.0022 Score=55.77 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=28.1
Q ss_pred EEEEecCCCCchHHHHHhhcCCC-ccccCCCCccccceEEE
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~-~~~s~~p~tT~~~~~~~ 98 (424)
|+|+|++|+|||||++.|.+.-. ......+.||+.|..+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e 42 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE 42 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc
Confidence 68999999999999999994321 11234456777665443
No 370
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.42 E-value=0.0026 Score=58.37 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=33.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEe
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~ 99 (424)
+.-|.|+|++|||||||.++|...........+.||+.|..|-+
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE 47 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC
Confidence 45689999999999999999984432233456889988877754
No 371
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.42 E-value=0.013 Score=56.77 Aligned_cols=85 Identities=21% Similarity=0.218 Sum_probs=56.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc-----------cccCC-----CCccccceEEEeecCCCcchhhcccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-----------QAANF-----PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~-----------~~s~~-----p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..+|+-+|+-+-|||||..||++ ..+ ...+- -+.|+.+...-...++
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~-~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~---------------- 74 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITT-VLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN---------------- 74 (394)
T ss_pred eeEEEEeccccCchhhHHHHHHH-HHHhhccccccchhhhccCchHhhcCceeccceeEEecCC----------------
Confidence 47999999999999999999983 211 11111 2445444333333332
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
..+-.+|+||.. .+....+....+.|..++||.|.+.+
T Consensus 75 -rhyahVDcPGHa-------DYvKNMItgAaqmDgAILVVsA~dGp 112 (394)
T COG0050 75 -RHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVAATDGP 112 (394)
T ss_pred -ceEEeccCCChH-------HHHHHHhhhHHhcCccEEEEEcCCCC
Confidence 558899999973 33344455567789999999998764
No 372
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0036 Score=59.45 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
+=-|+|||++|||||||+|.++|-..
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999996443
No 373
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.0015 Score=66.17 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+..|+++|++|+||||++..|.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999998
No 374
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.35 E-value=0.0058 Score=60.61 Aligned_cols=51 Identities=29% Similarity=0.477 Sum_probs=34.4
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCC-CccccceEEEeecCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPD 103 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-~tT~~~~~~~~~~~~ 103 (424)
..+.++++.+||.+++|||||...|. +-....+-.| |+-.|+..|.+.+|+
T Consensus 99 ~~~~GPrv~vVGp~d~GKsTl~r~L~-nyavk~gr~Plfv~LDvgQ~sitiPG 150 (415)
T KOG2749|consen 99 ESSYGPRVMVVGPTDVGKSTLCRILL-NYAVKQGRRPLFVELDVGQGSITIPG 150 (415)
T ss_pred hhccCCEEEEECCCccchHHHHHHHH-HHHHHcCCcceEEEcCCCCCceeccc
Confidence 45668999999999999999999998 3333333333 444555555544443
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.35 E-value=0.0068 Score=59.05 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+++|.||+||||+...|.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4678999999999999998887
No 376
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=96.28 E-value=0.017 Score=50.91 Aligned_cols=90 Identities=18% Similarity=0.194 Sum_probs=58.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
.-.++|+++|-+..|||||+-.-+|+..-... ............+.+.+.+ ..+-+||.-|..
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~-~q~~GvN~mdkt~~i~~t~---------------IsfSIwdlgG~~- 80 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEY-TQTLGVNFMDKTVSIRGTD---------------ISFSIWDLGGQR- 80 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHH-HHHhCccceeeEEEecceE---------------EEEEEEecCCcH-
Confidence 33689999999999999999999855432111 1111222233334444432 557899999873
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
...+..--++.++-+||++.|.+....
T Consensus 81 ------~~~n~lPiac~dsvaIlFmFDLt~r~T 107 (205)
T KOG1673|consen 81 ------EFINMLPIACKDSVAILFMFDLTRRST 107 (205)
T ss_pred ------hhhccCceeecCcEEEEEEEecCchHH
Confidence 233455556788899999999877653
No 377
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.24 E-value=0.0036 Score=57.82 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=31.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~ 98 (424)
++..|+|+|.+++|||||++.|.+.........+.+|+.|..|.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC
Confidence 45679999999999999999999543222333456777766554
No 378
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.22 E-value=0.0074 Score=54.20 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.3
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-++++|.||+||||+.-.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999977776
No 379
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.14 E-value=0.008 Score=61.92 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=65.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccce------EEEeecCCCcc--------hhhccccccccccCce
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN------VGIVAVPDPRL--------HVLSGLSKSQKAVPAS 122 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~------~~~~~~~~~~~--------d~l~~~~~~~~~~~~~ 122 (424)
.++.+|-+-.-|||||-..|+.......+...+.|+-.. ..-+++..+-+ +.+..+-++......-
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 356677777889999999999444333335555544221 11111111100 1133344555555677
Q ss_pred EEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 123 i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
|.++|.||.+++++ +..+++|-.|..|.|||+-+..
T Consensus 100 iNLIDSPGHVDFSS-------EVTAALRVTDGALVVVDcv~Gv 135 (842)
T KOG0469|consen 100 INLIDSPGHVDFSS-------EVTAALRVTDGALVVVDCVSGV 135 (842)
T ss_pred EEeccCCCcccchh-------hhhheeEeccCcEEEEEccCce
Confidence 99999999998877 7778899999999999996543
No 380
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.11 E-value=0.005 Score=63.73 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.7
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..++++|++||||||++..|.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA 242 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLA 242 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999998887
No 381
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.08 E-value=0.0044 Score=51.91 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
.|+|.|.|+|||||+.+.|.
T Consensus 1 vI~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999998
No 382
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.07 E-value=0.005 Score=57.34 Aligned_cols=43 Identities=21% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~ 97 (424)
.+.-|+|+|.+|||||||+++|...........+.||+.+..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~ 54 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPG 54 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCC
Confidence 4567899999999999999999833222224456677766544
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.05 E-value=0.0033 Score=57.19 Aligned_cols=45 Identities=31% Similarity=0.345 Sum_probs=34.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEee
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~ 100 (424)
++.-++|.|++|||||||+++|.... ..--....|||.|..|-+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~ 47 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVD 47 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcC
Confidence 45678999999999999999999444 3333346789998888653
No 384
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.02 E-value=0.0041 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+-.|+|+|.+|+|||||+|.+.|
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45899999999999999999993
No 385
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.02 E-value=0.0048 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||+++|+|.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3458999999999999999999943
No 386
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.01 E-value=0.016 Score=60.18 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+..|.++|.||+||||+...|.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 35689999999999999998886
No 387
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.98 E-value=0.015 Score=56.48 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+.+++++|.+++||||++..|++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 347999999999999999999983
No 388
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.89 E-value=0.041 Score=59.32 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=58.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhcc---ccccccccCceEEEEeCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG---LSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~---~~~~~~~~~~~i~lvDtpG~ 131 (424)
+++-|+|+|+--.|||-|+-.|. +..+.-+...+.|.. .|.-.+|-..+..-.. -+.-.++.-..+.+|||||.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir-~tNVqegeaggitqq--IgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIR-GTNVQEGEAGGITQQ--IGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred CCceEEEeecccccchHHHHHhh-ccccccccccceeee--ccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 35789999999999999999999 545555555555532 2222222111110000 01111122235899999996
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
- .+.|--..-..-||++|+|||.-+.
T Consensus 551 E-------sFtnlRsrgsslC~~aIlvvdImhG 576 (1064)
T KOG1144|consen 551 E-------SFTNLRSRGSSLCDLAILVVDIMHG 576 (1064)
T ss_pred h-------hhhhhhhccccccceEEEEeehhcc
Confidence 3 3333323334569999999998653
No 389
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.85 E-value=0.0069 Score=54.89 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+-++|+|++|+|||||+++|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li 27 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLI 27 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHH
Confidence 4578999999999999999998
No 390
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.014 Score=52.04 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.++|+|.|+||||||||+..+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 457899999999999999999887
No 391
>PRK07261 topology modulation protein; Provisional
Probab=95.75 E-value=0.0065 Score=54.85 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++|+|+|.||+|||||...|.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 392
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.74 E-value=0.0066 Score=62.31 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=19.4
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..++++|.+||||||+...|.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 458999999999999999998
No 393
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.72 E-value=0.0067 Score=54.25 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..++++|++|+|||||+++|.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~ 22 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLI 22 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999999
No 394
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.022 Score=58.15 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+++|.+|+||||.+..|+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA 195 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999887
No 395
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.62 E-value=0.032 Score=45.48 Aligned_cols=70 Identities=14% Similarity=0.078 Sum_probs=44.4
Q ss_pred EEEEe-cCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 59 AGIVG-LPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 59 I~ivG-~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
|++.| ..|+||||+.-.|. ...+. . ......+..+. ...++++|+|+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la-~~~~~-~-------~~~vl~~d~d~----------------~~d~viiD~p~~~~---- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLA-AALAR-R-------GKRVLLIDLDP----------------QYDYIIIDTPPSLG---- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHH-HHHHh-C-------CCcEEEEeCCC----------------CCCEEEEeCcCCCC----
Confidence 56666 78999999988887 32221 1 11122222211 14589999998632
Q ss_pred ccchhhhhhhhhhccceEEEEeecC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..+...+..||.++.+++.+
T Consensus 53 -----~~~~~~l~~ad~viv~~~~~ 72 (104)
T cd02042 53 -----LLTRNALAAADLVLIPVQPS 72 (104)
T ss_pred -----HHHHHHHHHCCEEEEeccCC
Confidence 24457778899999998863
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.018 Score=60.81 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.|+|+|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999983
No 397
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.58 E-value=0.35 Score=50.74 Aligned_cols=41 Identities=17% Similarity=-0.006 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEe
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~ 99 (424)
....|.|+|-.++|||||+++|-+.. .+.++...+...+.+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e----~~~~~~aLeYty~~v 64 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE----DPKKGLALEYTYLDV 64 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC----CCCCCcccceEEEee
Confidence 35789999999999999999997433 233444444444443
No 398
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.57 E-value=0.0088 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
+=-|+|+|++|||||||+|.|.|-.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4579999999999999999998443
No 399
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.53 E-value=0.021 Score=45.00 Aligned_cols=68 Identities=18% Similarity=0.097 Sum_probs=44.2
Q ss_pred EEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCcc
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~ 138 (424)
+++.|.+++||||+.+.|. ...+. ..+ ....+ + .+.++|+||......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~-~~l~~-~g~-------~v~~~--~-------------------d~iivD~~~~~~~~~-- 49 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLA-AALAK-RGK-------RVLLI--D-------------------DYVLIDTPPGLGLLV-- 49 (99)
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH-CCC-------eEEEE--C-------------------CEEEEeCCCCccchh--
Confidence 6788999999999999998 33222 011 11111 1 389999999753221
Q ss_pred cchhhhhhhhhhccceEEEEeecC
Q 014450 139 EGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 139 ~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......+..+|.++++++..
T Consensus 50 ----~~~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 50 ----LLCLLALLAADLVIIVTTPE 69 (99)
T ss_pred ----hhhhhhhhhCCEEEEecCCc
Confidence 00245667899999999863
No 400
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.028 Score=61.83 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+--|++||.+||||||++..|++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 34689999999999999999994
No 401
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.41 E-value=0.011 Score=45.04 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=18.3
Q ss_pred EEEEecCCCCchHHHHHhh
Q 014450 59 AGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~ 77 (424)
|++.|.|++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999998
No 402
>PRK10867 signal recognition particle protein; Provisional
Probab=95.37 E-value=0.031 Score=57.97 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.-|.++|.||+||||+.-.|.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5678999999999999666665
No 403
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.35 E-value=0.011 Score=53.90 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++|.|+|.|||||||+...|+
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999999
No 404
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.35 E-value=0.043 Score=53.05 Aligned_cols=66 Identities=23% Similarity=0.185 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
.-.-|+|+|..-+|||.|+|.|++.. ...+++. +.....|++-+..+ . .......+.|+||.|+..
T Consensus 20 ~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~---~~~~T~Giw~w~~~---------~-~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 20 PVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPT---VEPCTKGIWMWSEP---------L-PDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp BEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSC---SSST-SCEEEECCE-----------TTSTCEEEEEEEEECBTT
T ss_pred CEEEEEeecCCccchHHHHHHHhcccccccccCC---CCCCCcceeeeecc---------c-ccccceeEEEecchhccc
Confidence 34578999999999999999999532 1223221 22223455433221 0 011136799999999965
No 405
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.32 E-value=0.012 Score=43.93 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.6
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|.|..++|||||+.|+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999987
No 406
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.30 E-value=0.012 Score=53.65 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+-.|+|+|++|+|||||++.|.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999983
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.27 E-value=0.014 Score=59.24 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=39.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
...|++||++||||||-+-.|.. ..+ ..-....+|.++.++-|.-..-++-.-.++.+..+.++++|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAa-r~~------~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAA-RYV------MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH-HHH------hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH
Confidence 57899999999999999999982 211 12334566667666655433222222223333445555554
No 408
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=95.25 E-value=0.0016 Score=58.87 Aligned_cols=92 Identities=15% Similarity=0.163 Sum_probs=59.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
.+-.++-++|.-++||++++..-+ .....-.-......+....+....+..+ ..++|||++|..
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv-~~nfs~~yRAtIgvdfalkVl~wdd~t~--------------vRlqLwdIagQe- 86 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYV-HQNFSYHYRATIGVDFALKVLQWDDKTI--------------VRLQLWDIAGQE- 86 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHH-HHHHHHHHHHHHhHHHHHHHhccChHHH--------------HHHHHhcchhhh-
Confidence 345799999999999999999887 2221111111111122222233333221 458899999984
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCce
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI 167 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~ 167 (424)
.+|+...-..++|.+..+|+|.+....+
T Consensus 87 ------rfg~mtrVyykea~~~~iVfdvt~s~tf 114 (229)
T KOG4423|consen 87 ------RFGNMTRVYYKEAHGAFIVFDVTRSLTF 114 (229)
T ss_pred ------hhcceEEEEecCCcceEEEEEccccccc
Confidence 5556677778899999999999876553
No 409
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.21 E-value=0.022 Score=53.62 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.4
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+=..+||+||+||||-.|-++
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345789999999999888765
No 410
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.20 E-value=0.013 Score=55.58 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-+|||||.++||||||++.|+|
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 356899999999999999999993
No 411
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.013 Score=54.49 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+ .++|+|.+|+|||||++.|+|-
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999954
No 412
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.012 Score=55.56 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999954
No 413
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.19 E-value=0.013 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999999954
No 414
>PRK14530 adenylate kinase; Provisional
Probab=95.19 E-value=0.014 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.++|.|+|.|||||||+.+.|.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 415
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.16 E-value=0.01 Score=52.77 Aligned_cols=20 Identities=45% Similarity=0.655 Sum_probs=16.7
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
||+|+|-|++|||||+++|.
T Consensus 1 rI~i~G~~stGKTTL~~~L~ 20 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALA 20 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999999
No 416
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.13 E-value=0.013 Score=51.38 Aligned_cols=26 Identities=35% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.++|+|.+|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 34578999999999999999999543
No 417
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=95.13 E-value=0.039 Score=50.07 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=51.7
Q ss_pred EEEEEecCCCCchHHHHHhhc-----CCCccccC-CCCccccce------EEEeecCCCcc------h---hhccccccc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE-----NGKAQAAN-FPFCTIEPN------VGIVAVPDPRL------H---VLSGLSKSQ 116 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g-----~~~~~~s~-~p~tT~~~~------~~~~~~~~~~~------d---~l~~~~~~~ 116 (424)
-+.|.|+.|||||||+|.|+. .+.+.+-+ +.-...|.. .....+.+... + .+..+....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 367889999999999999992 22222222 221222211 11222222111 1 111111111
Q ss_pred cccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 117 ~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
. ......|+-+.|+..+... .+....+...-..+.++.|||+..
T Consensus 82 ~-~~~d~IiIE~sG~a~p~~l--~~~~~~~~~~~~~~~iI~vVDa~~ 125 (178)
T PF02492_consen 82 E-ERPDRIIIETSGLADPAPL--ILQDPPLKEDFRLDSIITVVDATN 125 (178)
T ss_dssp H-GC-SEEEEEEECSSGGGGH--HHHSHHHHHHESESEEEEEEEGTT
T ss_pred C-CCcCEEEECCccccccchh--hhccccccccccccceeEEecccc
Confidence 0 1245789999998655432 111233333445689999999943
No 418
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.12 E-value=0.014 Score=54.51 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 419
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.11 E-value=0.015 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..++|+|.+|+|||||+++|++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999994
No 420
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.11 E-value=0.013 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 421
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.10 E-value=0.014 Score=53.88 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3558999999999999999999954
No 422
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.014 Score=54.61 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999954
No 423
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.09 E-value=0.032 Score=53.77 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=41.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCC----CccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP----FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p----~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
.-.++|.-||.+|-|||||++.|. +......+.+ .....++..-+...+- .-.+.++||.
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLF-Nt~f~~~p~~H~~~~V~L~~~TyelqEsnv---------------rlKLtiv~tv 103 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLF-NTKFESEPSTHTLPNVKLQANTYELQESNV---------------RLKLTIVDTV 103 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHh-ccccCCCCCccCCCCceeecchhhhhhcCe---------------eEEEEEEeec
Confidence 446899999999999999999999 4443322222 2221111111122221 2568999999
Q ss_pred CCCCCCCc
Q 014450 130 GLVKGASQ 137 (424)
Q Consensus 130 G~~~~~~~ 137 (424)
|+.+-..+
T Consensus 104 GfGDQinK 111 (406)
T KOG3859|consen 104 GFGDQINK 111 (406)
T ss_pred ccccccCc
Confidence 99654433
No 424
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.09 E-value=0.015 Score=50.00 Aligned_cols=19 Identities=37% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEecCCCCchHHHHHhh
Q 014450 59 AGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~ 77 (424)
|.++|+|+||||||...|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6789999999999999998
No 425
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.08 E-value=0.016 Score=54.05 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999953
No 426
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.07 E-value=0.014 Score=54.22 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999999954
No 427
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.06 E-value=0.005 Score=58.27 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+--++|||+.+||||||||.+||-
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred CeEEEEECCCCCCceeeeeeeccc
Confidence 457899999999999999999943
No 428
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.03 E-value=0.0098 Score=58.20 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+|+|.+||||||++..|.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 429
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.019 Score=54.21 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+=.|+|||.+|||||||+..|.
T Consensus 30 GE~VaiIG~SGaGKSTLLR~ln 51 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLN 51 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHh
Confidence 4579999999999999999998
No 430
>PRK08118 topology modulation protein; Reviewed
Probab=95.01 E-value=0.016 Score=52.14 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+|.|+|.||||||||...|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 489999999999999999998
No 431
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.01 E-value=0.016 Score=52.69 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
..+-.++|+|..|+|||||++.|+|-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34568999999999999999999954
No 432
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.00 E-value=0.017 Score=48.41 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=18.3
Q ss_pred EEEEecCCCCchHHHHHhh
Q 014450 59 AGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~ 77 (424)
|+|.|.|+|||||+.+.|.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999
No 433
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.00 E-value=0.014 Score=54.46 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 434
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.98 E-value=0.018 Score=53.52 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..|+|.|.++||||||.++|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999993
No 435
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.97 E-value=0.018 Score=52.89 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999954
No 436
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.93 E-value=0.016 Score=53.50 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999954
No 437
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.92 E-value=0.016 Score=54.51 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 438
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.92 E-value=0.017 Score=53.70 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3557999999999999999999954
No 439
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=94.92 E-value=0.069 Score=54.13 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=21.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
....+|.+||..++|||||.+-|++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHH
Confidence 4468999999999999999887774
No 440
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=94.90 E-value=0.1 Score=54.63 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC--------C--cchh----------------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD--------P--RLHV---------------- 108 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~--------~--~~d~---------------- 108 (424)
.-++|++||--.+||||.+..+......+-+.-.-.|+.|+...+..+- . .+|-
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 3589999999999999999999966666555555567777655543221 1 0110
Q ss_pred ---------------hccccccccccCceEEEEeCCCCCCCCC-----c-ccchhhhhhhhhhccceEEEEee
Q 014450 109 ---------------LSGLSKSQKAVPASVEFVDIAGLVKGAS-----Q-GEGLGNKFLSHIREVDSILQVVR 160 (424)
Q Consensus 109 ---------------l~~~~~~~~~~~~~i~lvDtpG~~~~~~-----~-~~~~~~~~l~~i~~aD~il~Vvd 160 (424)
++--+....+ ..+++||.||++.... . -+.+-.....++.+..+|++++-
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgL--qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ 457 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGL--QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ 457 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCc--ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec
Confidence 1111111112 3589999999974321 1 12333455678889999888763
No 441
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.017 Score=53.71 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 442
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.90 E-value=0.016 Score=53.75 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+.-|+|+|.+|+|||||.++|++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999994
No 443
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.89 E-value=0.017 Score=53.53 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 444
>PRK03839 putative kinase; Provisional
Probab=94.89 E-value=0.018 Score=52.16 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++|.|+|.||+||||+-+.|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 445
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.89 E-value=0.017 Score=53.99 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|.|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999944
No 446
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.017 Score=53.96 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 447
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.85 E-value=0.018 Score=52.06 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999954
No 448
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.85 E-value=0.017 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|-
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999999954
No 449
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.85 E-value=0.018 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.82 E-value=0.018 Score=53.65 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 451
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.82 E-value=0.019 Score=51.72 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
.++|+|.||||||||+++|.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999983
No 452
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.82 E-value=0.018 Score=55.11 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3557999999999999999999953
No 453
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.81 E-value=0.02 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4568999999999999999999954
No 454
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.018 Score=54.26 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 455
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.81 E-value=0.021 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3558999999999999999999954
No 456
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.81 E-value=0.019 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 457
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.80 E-value=0.018 Score=53.93 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999953
No 458
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.79 E-value=0.019 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 459
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.77 E-value=0.019 Score=53.51 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 460
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.75 E-value=0.023 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 461
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=94.74 E-value=0.088 Score=38.24 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=41.4
Q ss_pred eEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 353 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 353 aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
...++.|+|+.+++..++..+.+.++.+.+. |+ .+..++.+.+||.|++-
T Consensus 10 ~~~~~~~~t~~~~~~~~~~~~~~~~va~~vn-----------------g~--~vdl~~~l~~~~~ve~v 59 (60)
T cd01668 10 IIELPAGATVLDFAYAIHTEIGNRCVGAKVN-----------------GK--LVPLSTVLKDGDIVEII 59 (60)
T ss_pred EEEcCCCCCHHHHHHHHChHhhhheEEEEEC-----------------CE--ECCCCCCCCCCCEEEEE
Confidence 5678999999999999999998888887754 32 46788999999988763
No 462
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.74 E-value=0.023 Score=52.45 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999954
No 463
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.018 Score=54.49 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3557999999999999999999954
No 464
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.74 E-value=0.018 Score=52.87 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.8
Q ss_pred EEEEecCCCCchHHHHHhhc
Q 014450 59 AGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g 78 (424)
|||+|.+|||||||.+.|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999983
No 465
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.02 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 466
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.73 E-value=0.019 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|+|||||++.|+|-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999954
No 467
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.73 E-value=0.02 Score=51.99 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.++|+|.+|+|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999543
No 468
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.73 E-value=0.027 Score=59.80 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
..+-+|||||..|+|||||++.|+|...
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3467999999999999999999996553
No 469
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=94.73 E-value=0.12 Score=56.06 Aligned_cols=94 Identities=20% Similarity=0.156 Sum_probs=61.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccc------cccccCceEEEEeCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK------SQKAVPASVEFVDIA 129 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~------~~~~~~~~i~lvDtp 129 (424)
..+|.+|-+---|||||.-.|. ......+... .|.+.+-|.|-|....... +.-..+..+.|||+|
T Consensus 9 irn~~~vahvdhgktsladsl~-asngvis~rl-------agkirfld~redeq~rgitmkss~is~~~~~~~~nlidsp 80 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLV-ASNGVISSRL-------AGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSP 80 (887)
T ss_pred eeEEEEEEEecCCccchHHHHH-hhccEechhh-------ccceeeccccchhhhhceeeeccccccccCceEEEEecCC
Confidence 3578999999999999999999 5544444332 2333333433332111100 011135779999999
Q ss_pred CCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
|.+++.+ ..-++.+=+|..+++||+-+.
T Consensus 81 ghvdf~s-------evssas~l~d~alvlvdvveg 108 (887)
T KOG0467|consen 81 GHVDFSS-------EVSSASRLSDGALVLVDVVEG 108 (887)
T ss_pred Cccchhh-------hhhhhhhhcCCcEEEEeeccc
Confidence 9998876 566677889999999998554
No 470
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.72 E-value=0.019 Score=53.33 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3557999999999999999999954
No 471
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.71 E-value=0.02 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999954
No 472
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.69 E-value=0.018 Score=56.00 Aligned_cols=164 Identities=21% Similarity=0.198 Sum_probs=83.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCC--Ccccc---ceEEEeecCC---Ccc-----------hhh-ccccc-
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIE---PNVGIVAVPD---PRL-----------HVL-SGLSK- 114 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p--~tT~~---~~~~~~~~~~---~~~-----------d~l-~~~~~- 114 (424)
..+||-+|+---||||+..|++|-......+.. ..|+. .|..+....+ +|- |.. +....
T Consensus 38 TiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~ 117 (466)
T KOG0466|consen 38 TINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGC 117 (466)
T ss_pred eeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCC
Confidence 478999999999999999999974332211111 01110 0000111111 110 000 00000
Q ss_pred c--ccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCc----eeeecc-ccccCCchhhhhhhh
Q 014450 115 S--QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND----IVHVNG-KVDPKSDVDVINLEL 187 (424)
Q Consensus 115 ~--~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~----~~~~~~-~~dp~~d~~~i~~el 187 (424)
+ .++. ..+-|+|+||. .-++...|+-..-.|+.++++-+.+.-. ..|+.. ....+..+- +
T Consensus 118 ~~~~klv-RHVSfVDCPGH-------DiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhii-----i 184 (466)
T KOG0466|consen 118 EGKMKLV-RHVSFVDCPGH-------DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHII-----I 184 (466)
T ss_pred CCceEEE-EEEEeccCCch-------HHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEE-----E
Confidence 0 1111 34789999996 3455566766677788888888754321 111100 000111111 1
Q ss_pred hcccHHHHHH-----HHHHHHhhccC-----C---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 188 VFSDLDQIEK-----RMEKLKKGKAK-----D---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 188 ~~~~~~~i~~-----~~~~i~k~~~~-----~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..|++|.+.+ +.+.+.+.... . ++||.-..|++.+.+.|.+..|.
T Consensus 185 lQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 185 LQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred EechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 2455555443 22233333221 1 26888888999999999988864
No 473
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.69 E-value=0.019 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999999954
No 474
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.69 E-value=0.02 Score=54.32 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999954
No 475
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.69 E-value=0.02 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999953
No 476
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.66 E-value=0.022 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.-.++|+|.+++|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999987
No 477
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.02 Score=53.27 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+--.+|+|+.|+|||||+.+|+|.
T Consensus 27 Gev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 27 GEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred CcEEEEECCCCccHHHHHHHhhCc
Confidence 456899999999999999999954
No 478
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.65 E-value=0.021 Score=54.94 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 479
>PRK10908 cell division protein FtsE; Provisional
Probab=94.65 E-value=0.021 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 480
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.64 E-value=0.021 Score=54.44 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999953
No 481
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.64 E-value=0.021 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999954
No 482
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.64 E-value=0.026 Score=49.35 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=19.0
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|+|+.|+|||||+..|.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li 21 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLI 21 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 483
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.64 E-value=0.021 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|-
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 484
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.63 E-value=0.02 Score=52.95 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999954
No 485
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.62 E-value=0.022 Score=54.08 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 486
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.62 E-value=0.025 Score=51.47 Aligned_cols=43 Identities=26% Similarity=0.264 Sum_probs=31.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCC-ccccCCCCccccceEEEe
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGIV 99 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~-~~~s~~p~tT~~~~~~~~ 99 (424)
.-|.|+|++||||+||.+.|..... ......+.||+.+..|..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~ 46 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEV 46 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCc
Confidence 3589999999999999999993321 244556788887766544
No 487
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.61 E-value=0.024 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567999999999999999999954
No 488
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.61 E-value=0.022 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999954
No 489
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.60 E-value=0.025 Score=52.48 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999954
No 490
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.59 E-value=0.022 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999954
No 491
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.59 E-value=0.022 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999954
No 492
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.58 E-value=0.022 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999954
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.58 E-value=0.026 Score=51.32 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+-.++|+|..|+|||||+|.+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 345689999999999999999987
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.58 E-value=0.023 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3458999999999999999999954
No 495
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.58 E-value=0.023 Score=52.73 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999954
No 496
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.023 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999954
No 497
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.58 E-value=0.023 Score=52.49 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|.|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999943
No 498
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.57 E-value=0.022 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999953
No 499
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.56 E-value=0.022 Score=52.71 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3568999999999999999999954
No 500
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.56 E-value=0.022 Score=54.65 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3568999999999999999999954
Done!