Query 014450
Match_columns 424
No_of_seqs 393 out of 3576
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:47:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014450.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014450hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jal_A YCHF protein; nucleotid 100.0 6.9E-88 2.4E-92 674.1 25.9 363 55-424 1-363 (363)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 1.9E-86 6.5E-91 669.6 25.3 366 53-424 19-389 (396)
3 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 8.6E-85 2.9E-89 658.9 30.9 369 54-424 18-391 (392)
4 2dby_A GTP-binding protein; GD 100.0 5.5E-84 1.9E-88 649.2 30.3 363 57-424 2-368 (368)
5 1wxq_A GTP-binding protein; st 100.0 7.7E-56 2.6E-60 449.8 23.5 337 57-422 1-394 (397)
6 4a9a_A Ribosome-interacting GT 100.0 1.9E-56 6.4E-61 449.3 -0.6 293 54-421 70-374 (376)
7 3iev_A GTP-binding protein ERA 99.9 4.5E-22 1.5E-26 195.2 8.7 198 54-272 8-229 (308)
8 1wf3_A GTP-binding protein; GT 99.8 5.1E-21 1.8E-25 187.1 10.4 197 56-272 7-221 (301)
9 2eki_A DRG 1, developmentally- 99.8 6.7E-20 2.3E-24 145.3 4.2 77 334-422 5-86 (93)
10 1ega_A Protein (GTP-binding pr 99.8 4.1E-19 1.4E-23 173.6 9.9 195 56-272 8-222 (301)
11 2qtf_A Protein HFLX, GTP-bindi 99.8 3.1E-19 1.1E-23 178.9 4.7 202 2-233 107-355 (364)
12 1lnz_A SPO0B-associated GTP-bi 99.7 3.2E-19 1.1E-23 177.3 3.6 159 57-235 159-333 (342)
13 1xzp_A Probable tRNA modificat 99.7 4.4E-18 1.5E-22 176.3 1.8 160 51-231 238-404 (482)
14 3gee_A MNME, tRNA modification 99.7 5.4E-18 1.9E-22 175.4 1.3 163 49-231 226-397 (476)
15 3iby_A Ferrous iron transport 99.7 1.3E-16 4.5E-21 152.3 10.1 150 57-229 2-164 (256)
16 1mky_A Probable GTP-binding pr 99.7 1.3E-16 4.5E-21 163.6 9.8 155 57-232 2-166 (439)
17 3i8s_A Ferrous iron transport 99.7 3E-16 1E-20 151.1 10.6 156 56-233 3-170 (274)
18 1udx_A The GTP-binding protein 99.6 7.9E-16 2.7E-20 156.5 14.1 90 56-162 157-246 (416)
19 2gj8_A MNME, tRNA modification 99.6 4.9E-17 1.7E-21 145.0 3.6 155 56-231 4-165 (172)
20 3a1s_A Iron(II) transport prot 99.6 2.5E-15 8.6E-20 143.5 12.7 154 56-232 5-167 (258)
21 3b1v_A Ferrous iron uptake tra 99.6 5.3E-16 1.8E-20 149.4 7.3 153 56-232 3-164 (272)
22 2wji_A Ferrous iron transport 99.6 1.6E-15 5.6E-20 133.8 9.2 152 56-230 3-163 (165)
23 3geh_A MNME, tRNA modification 99.6 2.3E-17 7.8E-22 170.2 -4.0 163 50-233 218-385 (462)
24 3k53_A Ferrous iron transport 99.6 7.2E-15 2.5E-19 140.9 12.9 157 56-234 3-168 (271)
25 3lxw_A GTPase IMAP family memb 99.6 9.9E-15 3.4E-19 138.3 13.6 92 55-163 20-117 (247)
26 2hjg_A GTP-binding protein ENG 99.6 2.1E-15 7.2E-20 154.6 7.9 154 57-232 4-165 (436)
27 2xtp_A GTPase IMAP family memb 99.6 3.2E-15 1.1E-19 142.1 8.4 92 55-163 21-117 (260)
28 4dhe_A Probable GTP-binding pr 99.6 8.3E-15 2.8E-19 135.1 10.3 158 55-232 28-211 (223)
29 2dyk_A GTP-binding protein; GT 99.5 4.1E-14 1.4E-18 122.9 12.1 154 57-231 2-161 (161)
30 4dcu_A GTP-binding protein ENG 99.5 1.7E-15 5.8E-20 156.1 3.3 154 56-231 23-184 (456)
31 2wjg_A FEOB, ferrous iron tran 99.5 1.4E-14 4.8E-19 129.7 8.7 155 56-233 7-170 (188)
32 3tw8_B RAS-related protein RAB 99.5 1.6E-13 5.4E-18 121.3 14.8 86 54-162 7-92 (181)
33 1g16_A RAS-related protein SEC 99.5 2E-13 6.7E-18 119.5 14.6 84 56-162 3-86 (170)
34 3cph_A RAS-related protein SEC 99.5 2.2E-13 7.7E-18 124.2 15.1 88 52-162 16-103 (213)
35 4dsu_A GTPase KRAS, isoform 2B 99.5 4.2E-13 1.4E-17 119.6 16.4 83 56-162 4-86 (189)
36 3tkl_A RAS-related protein RAB 99.5 3.9E-13 1.3E-17 120.9 16.1 85 55-162 15-99 (196)
37 2hjg_A GTP-binding protein ENG 99.5 3.1E-14 1.1E-18 145.9 9.5 157 55-232 174-349 (436)
38 2g6b_A RAS-related protein RAB 99.5 1.6E-14 5.4E-19 128.1 5.7 154 54-232 8-174 (180)
39 1upt_A ARL1, ADP-ribosylation 99.5 4.1E-14 1.4E-18 124.2 8.3 150 52-232 3-169 (171)
40 3t5g_A GTP-binding protein RHE 99.5 6.6E-13 2.2E-17 118.0 16.2 151 56-305 6-156 (181)
41 1ek0_A Protein (GTP-binding pr 99.5 8.8E-13 3E-17 115.1 16.7 84 56-162 3-86 (170)
42 2y8e_A RAB-protein 6, GH09086P 99.5 5.7E-13 1.9E-17 117.5 15.6 84 56-162 14-97 (179)
43 3cbq_A GTP-binding protein REM 99.5 6.2E-13 2.1E-17 120.8 16.1 90 51-162 18-107 (195)
44 3clv_A RAB5 protein, putative; 99.5 1.3E-12 4.6E-17 117.2 17.9 100 55-162 6-127 (208)
45 2qu8_A Putative nucleolar GTP- 99.5 4.3E-14 1.5E-18 131.5 8.1 157 55-232 28-205 (228)
46 1mky_A Probable GTP-binding pr 99.5 1.4E-13 4.9E-18 141.0 12.7 157 55-232 179-355 (439)
47 1u8z_A RAS-related protein RAL 99.5 9E-13 3.1E-17 114.7 15.9 83 56-162 4-86 (168)
48 1zj6_A ADP-ribosylation factor 99.5 5.5E-14 1.9E-18 126.1 8.3 150 55-235 15-181 (187)
49 2efe_B Small GTP-binding prote 99.5 1.2E-12 4.2E-17 115.8 16.8 84 56-162 12-95 (181)
50 4dcu_A GTP-binding protein ENG 99.5 8.7E-14 3E-18 143.3 10.6 158 54-232 193-369 (456)
51 2lkc_A Translation initiation 99.5 2E-14 6.7E-19 127.2 4.9 149 54-232 6-171 (178)
52 3lxx_A GTPase IMAP family memb 99.5 3.6E-13 1.2E-17 126.3 13.9 92 54-163 27-124 (239)
53 2bcg_Y Protein YP2, GTP-bindin 99.5 1.2E-12 4.1E-17 119.1 16.8 85 55-162 7-91 (206)
54 3pqc_A Probable GTP-binding pr 99.5 4.4E-13 1.5E-17 120.1 13.7 154 54-231 21-193 (195)
55 1z08_A RAS-related protein RAB 99.5 2.4E-14 8.3E-19 125.5 5.0 150 56-231 6-168 (170)
56 3qq5_A Small GTP-binding prote 99.5 4.2E-15 1.4E-19 151.5 0.1 160 54-233 32-197 (423)
57 2bov_A RAla, RAS-related prote 99.5 1.1E-12 3.9E-17 118.7 16.3 84 55-162 13-96 (206)
58 2a9k_A RAS-related protein RAL 99.5 1.5E-12 5E-17 115.7 16.5 83 56-162 18-100 (187)
59 1vg8_A RAS-related protein RAB 99.5 1.2E-12 4.2E-17 118.7 16.2 85 55-162 7-91 (207)
60 1svi_A GTP-binding protein YSX 99.5 3.8E-13 1.3E-17 120.9 12.7 153 55-231 22-194 (195)
61 2bme_A RAB4A, RAS-related prot 99.5 1.1E-12 3.9E-17 116.8 15.5 85 55-162 9-93 (186)
62 3q85_A GTP-binding protein REM 99.5 1.1E-12 3.7E-17 114.9 14.6 84 57-162 3-86 (169)
63 1kao_A RAP2A; GTP-binding prot 99.5 1.7E-12 5.9E-17 112.7 15.8 83 56-162 3-85 (167)
64 1zbd_A Rabphilin-3A; G protein 99.5 1.8E-12 6.3E-17 117.5 16.6 84 56-162 8-91 (203)
65 2il1_A RAB12; G-protein, GDP, 99.5 4.5E-14 1.5E-18 127.6 5.8 152 54-231 24-189 (192)
66 3q72_A GTP-binding protein RAD 99.5 2.3E-12 7.8E-17 112.5 16.6 82 56-162 2-83 (166)
67 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.2E-13 4E-18 122.9 8.4 152 56-234 5-182 (186)
68 1c1y_A RAS-related protein RAP 99.5 2.4E-12 8.1E-17 112.2 16.7 83 56-162 3-85 (167)
69 3r7w_A Gtpase1, GTP-binding pr 99.4 2.6E-12 9.1E-17 125.5 18.6 89 56-163 3-92 (307)
70 2fu5_C RAS-related protein RAB 99.4 3.3E-13 1.1E-17 120.2 11.1 85 55-162 7-91 (183)
71 1z0f_A RAB14, member RAS oncog 99.4 1.6E-12 5.5E-17 114.6 15.5 85 55-162 14-98 (179)
72 1z2a_A RAS-related protein RAB 99.4 2.9E-14 1E-18 124.6 4.0 151 55-231 4-166 (168)
73 1wms_A RAB-9, RAB9, RAS-relate 99.4 7.8E-14 2.7E-18 123.2 6.8 151 56-232 7-174 (177)
74 2ew1_A RAS-related protein RAB 99.4 9.1E-14 3.1E-18 127.2 7.1 151 55-231 25-188 (201)
75 1ksh_A ARF-like protein 2; sma 99.4 4.7E-14 1.6E-18 126.2 4.9 148 55-233 17-181 (186)
76 1r2q_A RAS-related protein RAB 99.4 5.6E-14 1.9E-18 122.8 5.3 150 56-231 6-168 (170)
77 2fn4_A P23, RAS-related protei 99.4 8.4E-14 2.9E-18 123.1 6.4 151 55-232 8-172 (181)
78 2fg5_A RAB-22B, RAS-related pr 99.4 8.9E-14 3E-18 125.5 6.4 153 54-233 21-187 (192)
79 1x3s_A RAS-related protein RAB 99.4 6.6E-14 2.2E-18 125.7 5.5 157 56-238 15-184 (195)
80 1z06_A RAS-related protein RAB 99.4 1.3E-12 4.5E-17 117.2 14.1 85 55-162 19-104 (189)
81 2nzj_A GTP-binding protein REM 99.4 1.4E-12 4.7E-17 114.8 13.8 85 56-162 4-88 (175)
82 2q3h_A RAS homolog gene family 99.4 9.4E-14 3.2E-18 125.9 6.4 91 52-166 16-106 (201)
83 2e87_A Hypothetical protein PH 99.4 4.6E-13 1.6E-17 133.6 11.9 157 54-231 165-335 (357)
84 3bc1_A RAS-related protein RAB 99.4 9.5E-14 3.2E-18 124.1 6.3 160 55-231 10-184 (195)
85 1ky3_A GTP-binding protein YPT 99.4 6.1E-14 2.1E-18 124.1 4.9 152 55-231 7-177 (182)
86 2hxs_A RAB-26, RAS-related pro 99.4 4.3E-14 1.5E-18 125.0 3.9 153 56-233 6-174 (178)
87 1zd9_A ADP-ribosylation factor 99.4 8.1E-14 2.8E-18 125.4 5.7 148 54-231 20-184 (188)
88 2h17_A ADP-ribosylation factor 99.4 6.4E-14 2.2E-18 125.1 4.6 144 54-228 19-179 (181)
89 1r8s_A ADP-ribosylation factor 99.4 1.4E-13 4.7E-18 120.1 6.6 144 57-231 1-161 (164)
90 2x77_A ADP-ribosylation factor 99.4 1.2E-13 4.2E-18 123.9 6.4 147 55-232 21-184 (189)
91 3kkq_A RAS-related protein M-R 99.4 3.8E-12 1.3E-16 113.2 16.1 85 54-162 16-100 (183)
92 2ce2_X GTPase HRAS; signaling 99.4 6.6E-12 2.3E-16 108.7 17.3 82 57-162 4-85 (166)
93 2h57_A ADP-ribosylation factor 99.4 3.8E-14 1.3E-18 127.5 3.0 148 55-231 20-186 (190)
94 2a5j_A RAS-related protein RAB 99.4 1.8E-12 6E-17 116.7 14.0 85 55-162 20-104 (191)
95 1f6b_A SAR1; gtpases, N-termin 99.4 6.6E-14 2.3E-18 127.5 4.5 83 56-166 25-107 (198)
96 1jwy_B Dynamin A GTPase domain 99.4 1E-12 3.5E-17 128.0 13.3 204 55-265 23-299 (315)
97 2p5s_A RAS and EF-hand domain 99.4 9.3E-14 3.2E-18 126.1 5.5 152 54-231 26-196 (199)
98 2hup_A RAS-related protein RAB 99.4 8.3E-14 2.8E-18 127.0 5.0 153 54-232 27-193 (201)
99 2gf9_A RAS-related protein RAB 99.4 7.3E-14 2.5E-18 125.5 4.6 150 56-231 22-184 (189)
100 4gzl_A RAS-related C3 botulinu 99.4 2.1E-13 7.2E-18 124.6 7.5 148 55-229 29-202 (204)
101 2yc2_C IFT27, small RAB-relate 99.4 4.7E-14 1.6E-18 127.9 3.0 154 55-231 19-191 (208)
102 3oes_A GTPase rhebl1; small GT 99.4 1.5E-13 5.3E-18 124.9 6.3 152 54-232 22-187 (201)
103 2oil_A CATX-8, RAS-related pro 99.4 1.3E-13 4.4E-18 124.2 5.6 152 54-231 23-187 (193)
104 3lvq_E ARF-GAP with SH3 domain 99.4 7.4E-14 2.5E-18 145.1 4.6 146 56-232 322-484 (497)
105 4bas_A ADP-ribosylation factor 99.4 9.6E-14 3.3E-18 125.2 4.7 150 54-232 15-189 (199)
106 3reg_A RHO-like small GTPase; 99.4 2E-13 6.8E-18 123.2 6.7 152 55-233 22-189 (194)
107 3con_A GTPase NRAS; structural 99.4 6.1E-12 2.1E-16 112.7 16.3 83 56-162 21-103 (190)
108 1m2o_B GTP-binding protein SAR 99.4 1.1E-13 3.8E-18 125.0 4.9 83 56-166 23-105 (190)
109 3dz8_A RAS-related protein RAB 99.4 7.4E-13 2.5E-17 119.2 10.3 87 53-162 20-106 (191)
110 2f7s_A C25KG, RAS-related prot 99.4 7.3E-14 2.5E-18 128.3 3.6 162 54-231 23-198 (217)
111 2aka_B Dynamin-1; fusion prote 99.4 3E-14 1E-18 137.6 0.8 200 55-264 25-292 (299)
112 1moz_A ARL1, ADP-ribosylation 99.4 1.3E-13 4.6E-18 122.5 4.9 146 55-231 17-179 (183)
113 2erx_A GTP-binding protein DI- 99.4 5.2E-12 1.8E-16 110.4 15.0 83 56-162 3-85 (172)
114 2o52_A RAS-related protein RAB 99.4 1E-13 3.4E-18 126.3 4.1 151 55-231 24-187 (200)
115 3bwd_D RAC-like GTP-binding pr 99.4 1.3E-13 4.3E-18 122.4 4.5 149 55-230 7-179 (182)
116 2j0v_A RAC-like GTP-binding pr 99.4 4.9E-13 1.7E-17 122.3 8.6 150 56-232 9-180 (212)
117 3l0i_B RAS-related protein RAB 99.4 8.9E-15 3E-19 132.9 -3.3 150 56-231 33-195 (199)
118 3q3j_B RHO-related GTP-binding 99.4 4.4E-13 1.5E-17 123.6 7.5 153 54-233 25-204 (214)
119 1z0j_A RAB-22, RAS-related pro 99.4 1.3E-12 4.4E-17 114.2 10.2 149 56-231 6-168 (170)
120 1fzq_A ADP-ribosylation factor 99.4 1.4E-13 4.6E-18 123.4 3.7 146 55-231 15-177 (181)
121 2atx_A Small GTP binding prote 99.4 4.4E-13 1.5E-17 120.8 6.9 87 56-166 18-104 (194)
122 2b6h_A ADP-ribosylation factor 99.4 4E-13 1.4E-17 121.5 6.4 146 55-231 28-190 (192)
123 3cpj_B GTP-binding protein YPT 99.4 1.7E-13 5.7E-18 126.9 3.8 152 55-232 12-176 (223)
124 2gf0_A GTP-binding protein DI- 99.4 1.5E-11 5.1E-16 110.7 16.3 83 55-162 7-90 (199)
125 4djt_A GTP-binding nuclear pro 99.4 6.1E-12 2.1E-16 115.5 13.5 87 54-162 9-95 (218)
126 3t1o_A Gliding protein MGLA; G 99.4 1.6E-11 5.5E-16 109.9 15.8 93 55-162 13-108 (198)
127 2fv8_A H6, RHO-related GTP-bin 99.3 6.8E-13 2.3E-17 121.2 6.4 86 56-165 25-110 (207)
128 3zvr_A Dynamin-1; hydrolase, D 99.3 1.2E-13 4.1E-18 149.2 1.2 208 54-271 49-334 (772)
129 3gj0_A GTP-binding nuclear pro 99.3 2.7E-12 9.2E-17 118.3 9.8 85 54-162 13-98 (221)
130 2iwr_A Centaurin gamma 1; ANK 99.3 5.1E-13 1.8E-17 118.3 4.6 143 56-231 7-168 (178)
131 1m7b_A RND3/RHOE small GTP-bin 99.3 2E-12 6.9E-17 115.6 8.4 88 55-166 6-93 (184)
132 2gco_A H9, RHO-related GTP-bin 99.3 8.4E-13 2.9E-17 120.1 5.9 86 56-165 25-110 (201)
133 2www_A Methylmalonic aciduria 99.3 1.2E-12 4E-17 130.4 7.4 163 53-232 71-279 (349)
134 3c5c_A RAS-like protein 12; GD 99.3 1.2E-12 4.2E-17 117.7 6.6 149 55-231 20-185 (187)
135 4dkx_A RAS-related protein RAB 99.3 2.7E-13 9.2E-18 126.0 2.3 151 56-232 13-176 (216)
136 2xex_A Elongation factor G; GT 99.3 4.6E-13 1.6E-17 144.6 4.2 226 55-345 9-258 (693)
137 3t5d_A Septin-7; GTP-binding p 99.3 6.5E-12 2.2E-16 120.5 11.6 157 55-232 7-204 (274)
138 2j1l_A RHO-related GTP-binding 99.3 3.9E-13 1.3E-17 123.8 2.9 151 55-232 33-209 (214)
139 2atv_A RERG, RAS-like estrogen 99.3 1.3E-12 4.5E-17 118.1 6.2 149 55-231 27-190 (196)
140 2g3y_A GTP-binding protein GEM 99.3 6.7E-13 2.3E-17 122.8 4.3 153 55-231 36-202 (211)
141 2cjw_A GTP-binding protein GEM 99.3 9.2E-13 3.2E-17 119.3 5.1 152 56-231 6-171 (192)
142 3th5_A RAS-related C3 botulinu 99.0 1.6E-13 5.5E-18 124.9 0.0 148 55-229 29-202 (204)
143 1gwn_A RHO-related GTP-binding 99.3 3.1E-12 1.1E-16 117.2 7.9 88 55-166 27-114 (205)
144 3def_A T7I23.11 protein; chlor 99.3 6.4E-12 2.2E-16 119.7 10.2 91 55-162 35-127 (262)
145 3o47_A ADP-ribosylation factor 99.3 1.2E-12 4.2E-17 129.2 5.0 146 56-232 165-327 (329)
146 1dar_A EF-G, elongation factor 99.3 9.5E-13 3.3E-17 142.1 4.4 227 55-345 11-260 (691)
147 3p26_A Elongation factor 1 alp 99.3 7.7E-12 2.6E-16 129.7 10.3 85 55-163 32-146 (483)
148 3llu_A RAS-related GTP-binding 99.3 1E-11 3.5E-16 112.4 9.6 86 54-164 18-108 (196)
149 2cxx_A Probable GTP-binding pr 99.3 2.5E-11 8.6E-16 108.2 11.8 150 57-232 2-184 (190)
150 3ihw_A Centg3; RAS, centaurin, 99.3 1.5E-12 5.3E-17 117.0 3.6 145 54-231 18-179 (184)
151 2wkq_A NPH1-1, RAS-related C3 99.3 9E-12 3.1E-16 121.4 9.3 152 53-231 152-329 (332)
152 1h65_A Chloroplast outer envel 99.3 1.4E-11 4.9E-16 117.8 10.2 91 55-162 38-130 (270)
153 2rdo_7 EF-G, elongation factor 99.3 6.5E-12 2.2E-16 135.8 8.5 233 55-345 9-266 (704)
154 2j69_A Bacterial dynamin-like 99.2 1.7E-12 5.8E-17 140.2 3.2 111 51-165 64-214 (695)
155 3izq_1 HBS1P, elongation facto 99.2 1.6E-11 5.4E-16 130.7 9.6 84 55-162 166-279 (611)
156 3sjy_A Translation initiation 99.2 7.7E-12 2.6E-16 126.7 6.7 165 54-232 6-192 (403)
157 3j2k_7 ERF3, eukaryotic polype 99.2 2.1E-11 7.2E-16 124.9 9.6 86 55-164 16-131 (439)
158 3ec1_A YQEH GTPase; atnos1, at 99.2 1.1E-11 3.7E-16 124.3 6.8 87 56-162 162-256 (369)
159 1wb1_A Translation elongation 99.2 1.5E-11 5.2E-16 127.5 6.5 147 56-231 19-188 (482)
160 2elf_A Protein translation elo 99.2 5.3E-11 1.8E-15 119.3 9.3 136 58-232 23-180 (370)
161 3tr5_A RF-3, peptide chain rel 99.2 3.6E-11 1.2E-15 125.8 8.4 87 55-165 12-119 (528)
162 2zej_A Dardarin, leucine-rich 99.2 7.3E-12 2.5E-16 112.2 2.3 155 56-232 2-178 (184)
163 3dpu_A RAB family protein; roc 99.1 9.1E-11 3.1E-15 123.1 10.3 94 54-162 39-132 (535)
164 2c78_A Elongation factor TU-A; 99.1 3.3E-10 1.1E-14 114.7 13.9 87 55-165 10-112 (405)
165 1oix_A RAS-related protein RAB 99.1 2.4E-11 8.3E-16 109.7 4.7 87 55-164 28-114 (191)
166 3izy_P Translation initiation 99.1 6.1E-12 2.1E-16 131.5 0.5 148 55-231 3-167 (537)
167 1zun_B Sulfate adenylate trans 99.1 4.3E-10 1.5E-14 115.0 14.0 101 56-163 24-139 (434)
168 1pui_A ENGB, probable GTP-bind 99.1 1.2E-10 4.1E-15 106.0 8.9 157 54-234 24-201 (210)
169 2f9l_A RAB11B, member RAS onco 99.1 2.5E-11 8.6E-16 110.0 4.3 87 56-165 5-91 (199)
170 3p32_A Probable GTPase RV1496/ 99.1 2.2E-10 7.4E-15 114.1 10.6 159 54-232 77-284 (355)
171 1puj_A YLQF, conserved hypothe 99.1 1E-10 3.5E-15 112.9 7.2 63 54-136 118-180 (282)
172 3mca_A HBS1, elongation factor 99.1 7.4E-12 2.5E-16 132.9 -2.0 86 55-164 176-291 (592)
173 3h2y_A GTPase family protein; 99.1 1.9E-10 6.4E-15 115.2 7.9 87 56-162 160-255 (368)
174 1kk1_A EIF2gamma; initiation o 99.0 2.2E-10 7.5E-15 116.2 7.9 167 55-232 9-200 (410)
175 2p67_A LAO/AO transport system 99.0 2.2E-10 7.4E-15 113.5 7.6 163 53-231 53-260 (341)
176 2fh5_B SR-beta, signal recogni 99.0 4.3E-10 1.5E-14 102.7 8.8 83 55-162 6-89 (214)
177 2dy1_A Elongation factor G; tr 99.0 3.9E-09 1.3E-13 113.4 17.3 47 300-346 207-253 (665)
178 1d2e_A Elongation factor TU (E 99.0 6.2E-10 2.1E-14 112.5 10.3 85 56-164 3-102 (397)
179 2qpt_A EH domain-containing pr 99.0 5E-10 1.7E-14 117.8 9.7 106 55-163 64-200 (550)
180 2x2e_A Dynamin-1; nitration, h 99.0 6.9E-10 2.4E-14 110.3 10.2 28 55-82 30-57 (353)
181 3c5h_A Glucocorticoid receptor 99.0 8.2E-11 2.8E-15 111.6 3.2 26 54-79 17-51 (255)
182 2ged_A SR-beta, signal recogni 99.0 3.1E-10 1.1E-14 101.7 6.8 82 54-162 46-129 (193)
183 2ywe_A GTP-binding protein LEP 99.0 1.7E-10 6E-15 122.1 5.8 155 56-232 6-184 (600)
184 3t34_A Dynamin-related protein 99.0 1.5E-09 5E-14 108.1 11.7 109 55-164 33-185 (360)
185 1s0u_A EIF-2-gamma, translatio 99.0 1.8E-09 6.2E-14 109.4 11.7 103 55-164 7-117 (408)
186 4fn5_A EF-G 1, elongation fact 99.0 7.9E-11 2.7E-15 127.6 1.1 234 56-346 13-270 (709)
187 3cb4_D GTP-binding protein LEP 99.0 1.8E-09 6.3E-14 114.3 11.1 155 56-232 4-182 (599)
188 1nrj_B SR-beta, signal recogni 98.9 1.6E-09 5.4E-14 99.2 7.3 81 54-162 10-93 (218)
189 1f60_A Elongation factor EEF1A 98.9 1.1E-09 3.9E-14 112.6 5.3 84 56-163 7-120 (458)
190 2qm8_A GTPase/ATPase; G protei 98.9 5.9E-09 2E-13 103.1 9.6 160 54-231 53-260 (337)
191 1g7s_A Translation initiation 98.9 4.6E-09 1.6E-13 111.3 9.4 97 56-163 5-105 (594)
192 3j25_A Tetracycline resistance 98.8 1.8E-09 6E-14 115.6 5.7 90 57-163 3-102 (638)
193 2h5e_A Peptide chain release f 98.8 5.1E-09 1.8E-13 109.6 9.0 85 56-164 13-118 (529)
194 1zo1_I IF2, translation initia 98.8 1.3E-09 4.4E-14 113.1 4.0 85 55-164 3-87 (501)
195 3avx_A Elongation factor TS, e 98.8 8.7E-09 3E-13 115.0 10.4 86 55-164 295-395 (1289)
196 1f5n_A Interferon-induced guan 98.8 5.4E-09 1.8E-13 110.3 8.3 69 53-133 35-103 (592)
197 3cnl_A YLQF, putative uncharac 98.8 2.2E-09 7.6E-14 102.4 4.8 59 57-135 100-158 (262)
198 1jny_A EF-1-alpha, elongation 98.8 3E-09 1E-13 108.7 5.6 84 56-163 6-119 (435)
199 1yrb_A ATP(GTP)binding protein 98.7 1.1E-08 3.9E-13 96.3 7.0 106 56-164 14-150 (262)
200 3hvz_A Uncharacterized protein 98.7 1.3E-08 4.3E-13 78.8 5.9 60 340-421 7-66 (78)
201 2qag_A Septin-2, protein NEDD5 98.7 8.6E-09 2.9E-13 102.8 6.2 31 52-82 33-63 (361)
202 1r5b_A Eukaryotic peptide chai 98.7 8.7E-09 3E-13 106.3 5.6 85 56-164 43-157 (467)
203 3vqt_A RF-3, peptide chain rel 98.7 4.4E-09 1.5E-13 110.5 1.9 85 56-164 31-136 (548)
204 2wsm_A Hydrogenase expression/ 98.7 1.7E-08 5.9E-13 92.5 5.6 159 55-231 29-213 (221)
205 1n0u_A EF-2, elongation factor 98.6 2.1E-08 7E-13 110.5 6.0 102 56-165 19-135 (842)
206 3r7w_B Gtpase2, GTP-binding pr 98.5 2.8E-07 9.5E-12 90.4 8.6 85 58-164 1-85 (331)
207 2qnr_A Septin-2, protein NEDD5 98.4 1E-06 3.6E-11 85.5 11.9 30 54-83 16-45 (301)
208 3q5d_A Atlastin-1; G protein, 98.3 2.7E-07 9.1E-12 94.3 4.9 73 55-134 66-153 (447)
209 1tq4_A IIGP1, interferon-induc 98.3 2.7E-06 9.2E-11 86.1 10.3 25 55-79 68-92 (413)
210 2hf9_A Probable hydrogenase ni 98.3 2E-06 7E-11 78.8 8.5 25 55-79 37-61 (226)
211 2j37_W Signal recognition part 98.2 9.5E-07 3.3E-11 91.6 6.5 106 55-164 100-226 (504)
212 3sop_A Neuronal-specific septi 98.2 4.8E-06 1.6E-10 79.6 10.5 25 57-81 3-27 (270)
213 2v3c_C SRP54, signal recogniti 98.0 4.2E-06 1.4E-10 85.3 5.7 23 56-78 99-121 (432)
214 2qag_B Septin-6, protein NEDD5 97.9 2.5E-05 8.6E-10 79.2 8.4 24 57-80 43-66 (427)
215 1t9h_A YLOQ, probable GTPase E 97.7 1.2E-05 4E-10 78.3 3.2 33 56-88 173-205 (307)
216 2qag_C Septin-7; cell cycle, c 97.6 3.4E-05 1.2E-09 78.2 5.1 29 53-81 28-56 (418)
217 3dm5_A SRP54, signal recogniti 97.6 7.4E-05 2.5E-09 76.1 7.0 106 55-164 99-225 (443)
218 2rcn_A Probable GTPase ENGC; Y 97.6 3.2E-05 1.1E-09 76.7 3.6 26 56-81 215-240 (358)
219 3szr_A Interferon-induced GTP- 97.4 0.0002 6.7E-09 76.1 7.7 24 56-79 45-68 (608)
220 2yv5_A YJEQ protein; hydrolase 97.4 0.00013 4.3E-09 70.7 5.3 33 56-89 165-197 (302)
221 1u0l_A Probable GTPase ENGC; p 97.4 0.00012 4.1E-09 70.8 5.0 31 56-86 169-199 (301)
222 3ney_A 55 kDa erythrocyte memb 97.2 5.6E-05 1.9E-09 68.7 0.6 43 56-98 19-62 (197)
223 1j8m_F SRP54, signal recogniti 97.2 0.00053 1.8E-08 66.2 6.6 22 56-77 98-119 (297)
224 3kl4_A SRP54, signal recogniti 97.1 0.0004 1.4E-08 70.5 5.9 23 55-77 96-118 (433)
225 2xxa_A Signal recognition part 96.9 0.00072 2.5E-08 68.7 5.4 106 55-164 99-226 (433)
226 1kgd_A CASK, peripheral plasma 96.9 0.00044 1.5E-08 61.3 3.0 42 56-97 5-47 (180)
227 1ye8_A Protein THEP1, hypothet 96.5 0.00097 3.3E-08 59.3 2.5 23 57-79 1-23 (178)
228 3tau_A Guanylate kinase, GMP k 96.4 0.0012 4.2E-08 59.8 2.8 42 56-97 8-50 (208)
229 2px0_A Flagellar biosynthesis 96.4 0.0024 8.2E-08 61.5 4.9 24 55-78 104-127 (296)
230 1cip_A Protein (guanine nucleo 96.4 0.0045 1.6E-07 61.1 6.7 38 120-164 192-229 (353)
231 2qor_A Guanylate kinase; phosp 96.4 0.0011 3.8E-08 59.7 1.9 44 53-96 9-53 (204)
232 2yhs_A FTSY, cell division pro 96.3 0.0027 9.3E-08 65.3 4.5 23 56-78 293-315 (503)
233 3a00_A Guanylate kinase, GMP k 96.2 0.0011 3.9E-08 58.8 1.0 22 58-79 3-24 (186)
234 1ex7_A Guanylate kinase; subst 96.2 0.0014 4.8E-08 58.9 1.5 41 59-99 4-45 (186)
235 1s96_A Guanylate kinase, GMP k 96.2 0.0022 7.4E-08 59.0 2.8 42 53-94 13-56 (219)
236 1kag_A SKI, shikimate kinase I 96.2 0.0021 7.1E-08 55.9 2.5 25 54-78 2-26 (173)
237 1lvg_A Guanylate kinase, GMP k 96.2 0.0018 6.2E-08 58.3 2.2 23 56-78 4-26 (198)
238 1zu4_A FTSY; GTPase, signal re 96.2 0.0068 2.3E-07 59.0 6.4 23 56-78 105-127 (320)
239 1zp6_A Hypothetical protein AT 96.0 0.0032 1.1E-07 55.6 3.2 23 56-78 9-31 (191)
240 3e70_C DPA, signal recognition 96.0 0.003 1E-07 61.8 3.2 24 55-78 128-151 (328)
241 3c8u_A Fructokinase; YP_612366 96.0 0.0032 1.1E-07 56.9 3.1 25 54-78 20-44 (208)
242 4ido_A Atlastin-1; GTPase, GTP 95.9 0.015 5.2E-07 59.1 8.0 23 55-77 66-88 (457)
243 3tr0_A Guanylate kinase, GMP k 95.9 0.0036 1.2E-07 55.8 2.8 24 56-79 7-30 (205)
244 1znw_A Guanylate kinase, GMP k 95.9 0.003 1E-07 57.1 2.3 27 53-79 17-43 (207)
245 3lnc_A Guanylate kinase, GMP k 95.8 0.0027 9.1E-08 58.3 1.8 25 56-80 27-52 (231)
246 1zcb_A G alpha I/13; GTP-bindi 95.7 0.0096 3.3E-07 59.0 5.5 37 120-163 200-236 (362)
247 2kmm_A Guanosine-3',5'-BIS(dip 95.7 0.012 4.2E-07 43.8 4.6 52 352-422 11-62 (73)
248 1cke_A CK, MSSA, protein (cyti 95.6 0.0055 1.9E-07 55.6 3.0 23 56-78 5-27 (227)
249 1z6g_A Guanylate kinase; struc 95.6 0.0044 1.5E-07 56.6 2.3 24 56-79 23-46 (218)
250 2pcj_A ABC transporter, lipopr 95.6 0.005 1.7E-07 56.7 2.6 25 55-79 29-53 (224)
251 3tif_A Uncharacterized ABC tra 95.6 0.0048 1.6E-07 57.3 2.4 25 55-79 30-54 (235)
252 3asz_A Uridine kinase; cytidin 95.6 0.0059 2E-07 54.9 2.9 23 56-78 6-28 (211)
253 1ly1_A Polynucleotide kinase; 95.5 0.0064 2.2E-07 52.8 2.9 23 55-77 1-23 (181)
254 2bdt_A BH3686; alpha-beta prot 95.5 0.0058 2E-07 53.9 2.6 22 57-78 3-24 (189)
255 4gp7_A Metallophosphoesterase; 95.4 0.0055 1.9E-07 53.7 2.2 22 56-77 9-30 (171)
256 2j41_A Guanylate kinase; GMP, 95.4 0.0066 2.3E-07 54.1 2.7 24 56-79 6-29 (207)
257 2onk_A Molybdate/tungstate ABC 95.4 0.0062 2.1E-07 56.7 2.5 23 57-79 25-47 (240)
258 3b85_A Phosphate starvation-in 95.4 0.0065 2.2E-07 55.3 2.5 24 56-79 22-45 (208)
259 2bbw_A Adenylate kinase 4, AK4 95.3 0.0077 2.6E-07 55.8 3.0 22 56-77 27-48 (246)
260 4eun_A Thermoresistant glucoki 95.3 0.0076 2.6E-07 54.0 2.7 23 56-78 29-51 (200)
261 1sgw_A Putative ABC transporte 95.3 0.0067 2.3E-07 55.6 2.4 24 56-79 35-58 (214)
262 1g6h_A High-affinity branched- 95.3 0.0066 2.3E-07 57.1 2.4 25 55-79 32-56 (257)
263 4g1u_C Hemin import ATP-bindin 95.3 0.0066 2.3E-07 57.5 2.4 25 55-79 36-60 (266)
264 2cbz_A Multidrug resistance-as 95.3 0.0068 2.3E-07 56.3 2.4 25 55-79 30-54 (237)
265 3gfo_A Cobalt import ATP-bindi 95.3 0.0067 2.3E-07 57.7 2.4 24 55-78 33-56 (275)
266 2v9p_A Replication protein E1; 95.3 0.0069 2.4E-07 58.6 2.5 24 55-78 125-148 (305)
267 1b0u_A Histidine permease; ABC 95.3 0.0068 2.3E-07 57.2 2.4 25 55-79 31-55 (262)
268 1jjv_A Dephospho-COA kinase; P 95.3 0.0084 2.9E-07 53.7 2.9 22 57-78 3-24 (206)
269 1mv5_A LMRA, multidrug resista 95.2 0.0076 2.6E-07 56.1 2.6 25 55-79 27-51 (243)
270 1np6_A Molybdopterin-guanine d 95.2 0.0093 3.2E-07 52.8 2.9 24 55-78 5-28 (174)
271 2ff7_A Alpha-hemolysin translo 95.2 0.0081 2.8E-07 56.2 2.6 25 55-79 34-58 (247)
272 2pze_A Cystic fibrosis transme 95.2 0.0076 2.6E-07 55.6 2.4 25 55-79 33-57 (229)
273 1ji0_A ABC transporter; ATP bi 95.2 0.0077 2.6E-07 56.0 2.4 25 55-79 31-55 (240)
274 2d2e_A SUFC protein; ABC-ATPas 95.2 0.0078 2.7E-07 56.3 2.5 24 55-78 28-51 (250)
275 3uie_A Adenylyl-sulfate kinase 95.1 0.01 3.5E-07 53.1 3.1 24 54-77 23-46 (200)
276 1azs_C GS-alpha; complex (lyas 95.1 0.027 9.2E-07 56.5 6.4 37 120-163 216-252 (402)
277 2olj_A Amino acid ABC transpor 95.1 0.008 2.7E-07 56.8 2.4 25 55-79 49-73 (263)
278 1vpl_A ABC transporter, ATP-bi 95.1 0.0081 2.8E-07 56.5 2.4 25 55-79 40-64 (256)
279 2qi9_C Vitamin B12 import ATP- 95.1 0.0081 2.8E-07 56.3 2.4 25 55-79 25-49 (249)
280 3cm0_A Adenylate kinase; ATP-b 95.1 0.0091 3.1E-07 52.3 2.6 23 55-77 3-25 (186)
281 2f1r_A Molybdopterin-guanine d 95.1 0.005 1.7E-07 54.3 0.8 21 57-77 3-23 (171)
282 2rhm_A Putative kinase; P-loop 95.1 0.012 4E-07 51.8 3.2 23 55-77 4-26 (193)
283 2zu0_C Probable ATP-dependent 95.1 0.0087 3E-07 56.6 2.5 24 55-78 45-68 (267)
284 4fid_A G protein alpha subunit 95.0 0.017 5.9E-07 56.6 4.6 35 121-162 161-195 (340)
285 2if2_A Dephospho-COA kinase; a 95.0 0.011 3.7E-07 52.8 2.9 22 57-78 2-23 (204)
286 3lw7_A Adenylate kinase relate 95.0 0.0099 3.4E-07 50.9 2.6 20 57-76 2-21 (179)
287 2ffh_A Protein (FFH); SRP54, s 95.0 0.015 5E-07 58.9 4.2 24 55-78 97-120 (425)
288 2ghi_A Transport protein; mult 95.0 0.0095 3.3E-07 56.1 2.6 24 55-78 45-68 (260)
289 3t61_A Gluconokinase; PSI-biol 95.0 0.01 3.6E-07 52.9 2.7 24 55-78 17-40 (202)
290 2nq2_C Hypothetical ABC transp 95.0 0.0092 3.1E-07 56.0 2.4 25 55-79 30-54 (253)
291 2ixe_A Antigen peptide transpo 95.0 0.0092 3.2E-07 56.6 2.4 25 55-79 44-68 (271)
292 3ohm_A Guanine nucleotide-bind 95.0 0.08 2.7E-06 51.5 9.1 35 121-162 167-201 (327)
293 1qhx_A CPT, protein (chloramph 95.0 0.012 4.1E-07 51.1 2.9 22 56-77 3-24 (178)
294 2qt1_A Nicotinamide riboside k 95.0 0.013 4.5E-07 52.5 3.2 25 54-78 19-43 (207)
295 2ihy_A ABC transporter, ATP-bi 95.0 0.01 3.5E-07 56.6 2.6 25 55-79 46-70 (279)
296 1knq_A Gluconate kinase; ALFA/ 94.9 0.012 4.1E-07 51.1 2.9 23 56-78 8-30 (175)
297 2yz2_A Putative ABC transporte 94.9 0.0097 3.3E-07 56.2 2.4 25 55-79 32-56 (266)
298 2i3b_A HCR-ntpase, human cance 94.9 0.0089 3E-07 53.6 2.0 22 58-79 3-24 (189)
299 2eyu_A Twitching motility prot 94.9 0.0098 3.4E-07 56.1 2.2 25 54-78 23-47 (261)
300 1htw_A HI0065; nucleotide-bind 94.9 0.013 4.6E-07 50.8 3.0 26 55-80 32-57 (158)
301 4a74_A DNA repair and recombin 94.8 0.011 3.8E-07 53.4 2.5 23 56-78 25-47 (231)
302 3kb2_A SPBC2 prophage-derived 94.8 0.013 4.4E-07 50.4 2.7 21 57-77 2-22 (173)
303 2iyv_A Shikimate kinase, SK; t 94.8 0.011 3.9E-07 51.7 2.3 23 55-77 1-23 (184)
304 2yvu_A Probable adenylyl-sulfa 94.8 0.015 5.1E-07 51.2 3.1 23 55-77 12-34 (186)
305 2v54_A DTMP kinase, thymidylat 94.7 0.015 5.2E-07 51.6 3.1 23 55-77 3-25 (204)
306 2jaq_A Deoxyguanosine kinase; 94.7 0.013 4.6E-07 51.8 2.7 21 57-77 1-21 (205)
307 3fb4_A Adenylate kinase; psych 94.7 0.014 4.8E-07 52.5 2.7 21 57-77 1-21 (216)
308 2pjz_A Hypothetical protein ST 94.6 0.014 4.7E-07 55.2 2.6 23 56-78 30-52 (263)
309 3aez_A Pantothenate kinase; tr 94.6 0.014 4.8E-07 56.5 2.8 25 54-78 88-112 (312)
310 3nh6_A ATP-binding cassette SU 94.6 0.009 3.1E-07 57.8 1.4 24 55-78 79-102 (306)
311 2ehv_A Hypothetical protein PH 94.6 0.014 4.7E-07 53.5 2.4 22 56-77 30-51 (251)
312 3dl0_A Adenylate kinase; phosp 94.6 0.016 5.3E-07 52.3 2.7 21 57-77 1-21 (216)
313 3vaa_A Shikimate kinase, SK; s 94.5 0.017 5.9E-07 51.5 2.9 22 56-77 25-46 (199)
314 2wwf_A Thymidilate kinase, put 94.5 0.02 6.7E-07 51.2 3.3 23 55-77 9-31 (212)
315 2jeo_A Uridine-cytidine kinase 94.5 0.016 5.6E-07 53.6 2.8 24 55-78 24-47 (245)
316 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.016 5.4E-07 56.6 2.7 24 56-79 171-194 (330)
317 2bbs_A Cystic fibrosis transme 94.4 0.017 5.9E-07 55.3 2.8 25 55-79 63-87 (290)
318 1nn5_A Similar to deoxythymidy 94.4 0.022 7.4E-07 51.0 3.2 23 55-77 8-30 (215)
319 3tui_C Methionine import ATP-b 94.4 0.016 5.5E-07 57.4 2.5 25 55-79 53-77 (366)
320 1uf9_A TT1252 protein; P-loop, 94.4 0.022 7.4E-07 50.5 3.1 24 54-77 6-29 (203)
321 1kht_A Adenylate kinase; phosp 94.4 0.019 6.6E-07 50.2 2.8 22 56-77 3-24 (192)
322 1rz3_A Hypothetical protein rb 94.3 0.022 7.4E-07 51.0 3.1 25 54-78 20-44 (201)
323 1nks_A Adenylate kinase; therm 94.3 0.02 6.8E-07 50.1 2.8 21 57-77 2-22 (194)
324 1via_A Shikimate kinase; struc 94.3 0.017 5.8E-07 50.3 2.3 21 57-77 5-25 (175)
325 1y63_A LMAJ004144AAA protein; 94.3 0.023 7.9E-07 50.1 3.1 22 56-77 10-31 (184)
326 1lw7_A Transcriptional regulat 94.3 0.014 4.8E-07 57.5 1.9 24 56-79 170-193 (365)
327 2c95_A Adenylate kinase 1; tra 94.3 0.023 7.8E-07 50.0 3.1 23 55-77 8-30 (196)
328 1qf9_A UMP/CMP kinase, protein 94.2 0.024 8.2E-07 49.5 3.2 23 55-77 5-27 (194)
329 2pt5_A Shikimate kinase, SK; a 94.2 0.02 6.8E-07 49.2 2.6 21 57-77 1-21 (168)
330 4e22_A Cytidylate kinase; P-lo 94.2 0.022 7.5E-07 53.1 3.0 22 56-77 27-48 (252)
331 2plr_A DTMP kinase, probable t 94.2 0.022 7.4E-07 50.7 2.9 22 56-77 4-25 (213)
332 1tev_A UMP-CMP kinase; ploop, 94.2 0.021 7.2E-07 50.0 2.7 22 56-77 3-24 (196)
333 2gza_A Type IV secretion syste 94.2 0.019 6.4E-07 56.7 2.6 24 55-78 174-197 (361)
334 2cdn_A Adenylate kinase; phosp 94.2 0.024 8.1E-07 50.5 3.1 25 53-77 17-41 (201)
335 2kjq_A DNAA-related protein; s 94.2 0.019 6.5E-07 49.2 2.3 24 55-78 35-58 (149)
336 1vht_A Dephospho-COA kinase; s 94.2 0.022 7.6E-07 51.4 2.9 23 55-77 3-25 (218)
337 2bwj_A Adenylate kinase 5; pho 94.2 0.018 6E-07 50.9 2.2 23 55-77 11-33 (199)
338 3trf_A Shikimate kinase, SK; a 94.1 0.023 7.9E-07 49.7 2.8 22 56-77 5-26 (185)
339 1sq5_A Pantothenate kinase; P- 94.1 0.023 7.9E-07 54.7 3.0 25 54-78 78-102 (308)
340 3fvq_A Fe(3+) IONS import ATP- 94.1 0.02 7E-07 56.5 2.7 36 56-103 30-65 (359)
341 1e4v_A Adenylate kinase; trans 94.1 0.024 8.4E-07 51.1 2.9 21 57-77 1-21 (214)
342 3ec2_A DNA replication protein 94.0 0.02 6.9E-07 50.0 2.2 23 56-78 38-60 (180)
343 1e6c_A Shikimate kinase; phosp 94.0 0.023 7.7E-07 49.0 2.5 21 57-77 3-23 (173)
344 3jvv_A Twitching mobility prot 94.0 0.019 6.6E-07 56.6 2.2 23 56-78 123-145 (356)
345 1z47_A CYSA, putative ABC-tran 94.0 0.021 7.3E-07 56.3 2.5 25 55-79 40-64 (355)
346 1zd8_A GTP:AMP phosphotransfer 94.0 0.027 9.2E-07 51.3 3.0 22 56-77 7-28 (227)
347 1aky_A Adenylate kinase; ATP:A 94.0 0.026 9E-07 51.0 2.9 22 56-77 4-25 (220)
348 2yyz_A Sugar ABC transporter, 93.9 0.022 7.5E-07 56.3 2.5 25 55-79 28-52 (359)
349 2pez_A Bifunctional 3'-phospho 93.9 0.027 9.4E-07 49.1 2.9 22 56-77 5-26 (179)
350 3a4m_A L-seryl-tRNA(SEC) kinas 93.9 0.027 9.2E-07 52.7 2.9 22 56-77 4-25 (260)
351 1zak_A Adenylate kinase; ATP:A 93.8 0.029 9.9E-07 50.8 2.9 23 55-77 4-26 (222)
352 2pbr_A DTMP kinase, thymidylat 93.8 0.027 9.4E-07 49.3 2.7 21 57-77 1-21 (195)
353 1g29_1 MALK, maltose transport 93.8 0.024 8.2E-07 56.3 2.5 36 56-103 29-64 (372)
354 2it1_A 362AA long hypothetical 93.8 0.024 8.3E-07 56.1 2.5 25 55-79 28-52 (362)
355 3rlf_A Maltose/maltodextrin im 93.8 0.024 8.3E-07 56.4 2.5 24 56-79 29-52 (381)
356 1m7g_A Adenylylsulfate kinase; 93.8 0.034 1.2E-06 50.1 3.2 25 53-77 22-46 (211)
357 2oap_1 GSPE-2, type II secreti 93.7 0.028 9.7E-07 58.1 2.9 23 56-78 260-282 (511)
358 3tlx_A Adenylate kinase 2; str 93.7 0.038 1.3E-06 51.1 3.5 25 53-77 26-50 (243)
359 2vli_A Antibiotic resistance p 93.7 0.028 9.6E-07 48.9 2.5 22 56-77 5-26 (183)
360 1v43_A Sugar-binding transport 93.7 0.026 8.9E-07 56.0 2.5 25 55-79 36-60 (372)
361 1gtv_A TMK, thymidylate kinase 93.6 0.018 6.2E-07 51.5 1.1 20 58-77 2-21 (214)
362 3iij_A Coilin-interacting nucl 93.6 0.032 1.1E-06 48.6 2.8 22 56-77 11-32 (180)
363 3be4_A Adenylate kinase; malar 93.6 0.035 1.2E-06 50.2 3.1 22 56-77 5-26 (217)
364 2xtz_A Guanine nucleotide-bind 93.6 0.075 2.6E-06 52.3 5.7 35 121-162 183-217 (354)
365 2ewv_A Twitching motility prot 93.5 0.032 1.1E-06 55.3 2.9 24 55-78 135-158 (372)
366 1nij_A Hypothetical protein YJ 93.5 0.034 1.2E-06 53.7 3.0 24 57-80 5-28 (318)
367 3tqc_A Pantothenate kinase; bi 93.5 0.039 1.3E-06 53.7 3.3 25 54-78 90-114 (321)
368 2z0h_A DTMP kinase, thymidylat 93.5 0.034 1.2E-06 48.9 2.7 21 57-77 1-21 (197)
369 1rj9_A FTSY, signal recognitio 93.5 0.035 1.2E-06 53.5 3.0 24 55-78 101-124 (304)
370 3gd7_A Fusion complex of cysti 93.5 0.031 1.1E-06 55.8 2.7 24 55-78 46-69 (390)
371 3cr8_A Sulfate adenylyltranfer 93.4 0.045 1.6E-06 57.1 3.9 26 53-78 366-391 (552)
372 2x8a_A Nuclear valosin-contain 93.4 0.029 9.8E-07 53.1 2.2 21 58-78 46-66 (274)
373 2vp4_A Deoxynucleoside kinase; 93.4 0.034 1.2E-06 50.9 2.6 26 54-79 18-43 (230)
374 3d31_A Sulfate/molybdate ABC t 93.4 0.022 7.4E-07 56.1 1.2 24 56-79 26-49 (348)
375 1odf_A YGR205W, hypothetical 3 93.3 0.049 1.7E-06 52.1 3.7 24 54-77 29-52 (290)
376 4dzz_A Plasmid partitioning pr 93.3 0.094 3.2E-06 46.3 5.3 33 121-162 76-108 (206)
377 1uj2_A Uridine-cytidine kinase 93.3 0.039 1.3E-06 51.2 2.9 23 55-77 21-43 (252)
378 1p9r_A General secretion pathw 93.3 0.03 1E-06 56.4 2.2 23 56-78 167-189 (418)
379 3nwj_A ATSK2; P loop, shikimat 93.2 0.036 1.2E-06 51.9 2.5 23 56-78 48-70 (250)
380 2p5t_B PEZT; postsegregational 93.2 0.035 1.2E-06 51.6 2.5 25 54-78 30-54 (253)
381 1cr0_A DNA primase/helicase; R 93.2 0.035 1.2E-06 52.6 2.5 24 55-78 34-57 (296)
382 2xb4_A Adenylate kinase; ATP-b 93.2 0.039 1.4E-06 50.2 2.7 21 57-77 1-21 (223)
383 1xjc_A MOBB protein homolog; s 93.1 0.045 1.5E-06 48.1 2.8 21 57-77 5-25 (169)
384 1oxx_K GLCV, glucose, ABC tran 93.1 0.02 6.8E-07 56.4 0.5 25 55-79 30-54 (353)
385 1ukz_A Uridylate kinase; trans 93.0 0.048 1.6E-06 48.4 3.0 22 56-77 15-36 (203)
386 3ake_A Cytidylate kinase; CMP 93.0 0.048 1.6E-06 48.4 2.9 21 57-77 3-23 (208)
387 2npi_A Protein CLP1; CLP1-PCF1 93.0 0.041 1.4E-06 56.2 2.7 26 55-80 137-162 (460)
388 1ixz_A ATP-dependent metallopr 92.9 0.039 1.3E-06 51.0 2.3 21 58-78 51-71 (254)
389 3b9q_A Chloroplast SRP recepto 92.9 0.046 1.6E-06 52.6 2.8 24 55-78 99-122 (302)
390 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.043 1.5E-06 49.3 2.4 22 56-77 23-44 (235)
391 1yqt_A RNAse L inhibitor; ATP- 92.9 0.043 1.5E-06 57.2 2.7 27 54-80 45-71 (538)
392 3r20_A Cytidylate kinase; stru 92.8 0.05 1.7E-06 50.4 2.8 23 55-77 8-30 (233)
393 3kjh_A CO dehydrogenase/acetyl 92.7 0.022 7.7E-07 52.0 0.3 21 57-77 1-21 (254)
394 1ak2_A Adenylate kinase isoenz 92.7 0.056 1.9E-06 49.4 3.0 23 55-77 15-37 (233)
395 3kta_A Chromosome segregation 92.7 0.052 1.8E-06 47.3 2.6 20 58-77 28-47 (182)
396 2obl_A ESCN; ATPase, hydrolase 92.7 0.049 1.7E-06 53.5 2.7 25 55-79 70-94 (347)
397 4eaq_A DTMP kinase, thymidylat 92.7 0.058 2E-06 49.6 3.0 24 54-77 24-47 (229)
398 1ltq_A Polynucleotide kinase; 92.7 0.054 1.8E-06 51.3 2.9 22 56-77 2-23 (301)
399 3ozx_A RNAse L inhibitor; ATP 92.6 0.044 1.5E-06 57.1 2.4 26 55-80 24-49 (538)
400 1gvn_B Zeta; postsegregational 92.6 0.062 2.1E-06 51.2 3.2 23 55-77 32-54 (287)
401 3sr0_A Adenylate kinase; phosp 92.5 0.056 1.9E-06 49.0 2.7 21 57-77 1-21 (206)
402 2yl4_A ATP-binding cassette SU 92.5 0.059 2E-06 56.7 3.3 24 55-78 369-392 (595)
403 3end_A Light-independent proto 92.5 0.3 1E-05 46.3 8.0 23 55-77 40-62 (307)
404 3b60_A Lipid A export ATP-bind 92.4 0.061 2.1E-06 56.4 3.2 25 55-79 368-392 (582)
405 3j16_B RLI1P; ribosome recycli 92.4 0.05 1.7E-06 57.5 2.5 26 55-80 102-127 (608)
406 3euj_A Chromosome partition pr 92.4 0.049 1.7E-06 55.9 2.3 23 57-79 30-52 (483)
407 3qf4_B Uncharacterized ABC tra 92.3 0.066 2.3E-06 56.4 3.2 37 55-103 380-416 (598)
408 1iy2_A ATP-dependent metallopr 92.3 0.053 1.8E-06 51.0 2.3 21 58-78 75-95 (278)
409 1in4_A RUVB, holliday junction 92.1 0.054 1.9E-06 52.6 2.2 23 57-79 52-74 (334)
410 3bk7_A ABC transporter ATP-bin 92.1 0.059 2E-06 56.9 2.6 27 54-80 115-141 (607)
411 1zuh_A Shikimate kinase; alpha 92.1 0.067 2.3E-06 46.0 2.6 21 57-77 8-28 (168)
412 3b5x_A Lipid A export ATP-bind 92.0 0.066 2.3E-06 56.2 2.9 25 55-79 368-392 (582)
413 2grj_A Dephospho-COA kinase; T 92.0 0.072 2.5E-06 47.7 2.6 22 56-77 12-33 (192)
414 2cvh_A DNA repair and recombin 91.9 0.066 2.3E-06 47.8 2.4 23 56-78 20-42 (220)
415 1q3t_A Cytidylate kinase; nucl 91.9 0.082 2.8E-06 48.4 3.1 23 55-77 15-37 (236)
416 2f6r_A COA synthase, bifunctio 91.9 0.083 2.8E-06 50.0 3.1 22 56-77 75-96 (281)
417 2ze6_A Isopentenyl transferase 91.8 0.068 2.3E-06 49.8 2.4 21 58-78 3-23 (253)
418 3qf7_A RAD50; ABC-ATPase, ATPa 91.8 0.067 2.3E-06 52.8 2.4 20 58-77 25-44 (365)
419 2og2_A Putative signal recogni 91.8 0.077 2.6E-06 52.4 2.8 24 55-78 156-179 (359)
420 1svm_A Large T antigen; AAA+ f 91.7 0.078 2.7E-06 52.7 2.9 24 55-78 168-191 (377)
421 2dpy_A FLII, flagellum-specifi 91.7 0.074 2.5E-06 53.9 2.7 25 55-79 156-180 (438)
422 1n0w_A DNA repair protein RAD5 91.7 0.073 2.5E-06 48.3 2.4 23 56-78 24-46 (243)
423 4a82_A Cystic fibrosis transme 91.6 0.06 2.1E-06 56.5 2.0 37 55-103 366-402 (578)
424 3ozx_A RNAse L inhibitor; ATP 91.6 0.07 2.4E-06 55.5 2.4 25 56-80 294-318 (538)
425 3qf4_A ABC transporter, ATP-bi 91.5 0.072 2.5E-06 56.0 2.5 24 55-78 368-391 (587)
426 4f4c_A Multidrug resistance pr 91.5 0.076 2.6E-06 61.2 2.8 23 55-77 1104-1126(1321)
427 1bif_A 6-phosphofructo-2-kinas 91.3 0.089 3E-06 53.6 2.9 24 54-77 37-60 (469)
428 1yqt_A RNAse L inhibitor; ATP- 91.2 0.11 3.9E-06 53.9 3.6 26 55-80 311-336 (538)
429 1f2t_A RAD50 ABC-ATPase; DNA d 91.0 0.09 3.1E-06 44.9 2.2 20 58-77 25-44 (149)
430 3bk7_A ABC transporter ATP-bin 91.0 0.086 3E-06 55.7 2.5 24 56-79 382-405 (607)
431 3gmt_A Adenylate kinase; ssgci 90.9 0.11 3.7E-06 48.1 2.7 22 56-77 8-29 (230)
432 1jbk_A CLPB protein; beta barr 90.8 0.13 4.5E-06 44.0 3.0 22 56-77 43-64 (195)
433 3j16_B RLI1P; ribosome recycli 90.6 0.097 3.3E-06 55.3 2.4 23 58-80 380-402 (608)
434 3b9p_A CG5977-PA, isoform A; A 90.4 0.47 1.6E-05 44.5 6.9 24 55-78 53-76 (297)
435 1nlf_A Regulatory protein REPA 90.3 0.12 4.2E-06 48.5 2.6 24 55-78 29-52 (279)
436 3cwq_A Para family chromosome 90.2 0.54 1.8E-05 42.1 6.8 33 121-161 68-100 (209)
437 1qhl_A Protein (cell division 89.8 0.024 8.3E-07 52.3 -2.8 21 58-78 29-49 (227)
438 1p5z_B DCK, deoxycytidine kina 89.7 0.12 4E-06 48.2 1.9 23 55-77 23-45 (263)
439 3pxg_A Negative regulator of g 89.7 0.5 1.7E-05 48.0 6.7 22 56-77 201-222 (468)
440 1lv7_A FTSH; alpha/beta domain 89.5 0.18 6.1E-06 46.5 3.0 23 56-78 45-67 (257)
441 2dhr_A FTSH; AAA+ protein, hex 89.5 0.12 4E-06 53.3 1.9 23 57-79 65-87 (499)
442 2ocp_A DGK, deoxyguanosine kin 89.2 0.2 6.9E-06 45.8 3.1 22 56-77 2-23 (241)
443 2iw3_A Elongation factor 3A; a 89.0 0.17 6E-06 56.1 2.9 26 55-80 460-485 (986)
444 2h92_A Cytidylate kinase; ross 88.9 0.18 6.1E-06 45.2 2.5 22 56-77 3-24 (219)
445 3n70_A Transport activator; si 88.8 0.28 9.7E-06 41.1 3.5 23 55-77 23-45 (145)
446 2iw3_A Elongation factor 3A; a 88.8 0.1 3.5E-06 57.9 0.9 26 55-80 698-723 (986)
447 3bos_A Putative DNA replicatio 88.8 0.22 7.5E-06 44.7 2.9 23 55-77 51-73 (242)
448 3umf_A Adenylate kinase; rossm 88.8 0.22 7.7E-06 45.4 3.0 22 56-77 29-50 (217)
449 1puj_A YLQF, conserved hypothe 88.7 0.28 9.6E-06 46.5 3.8 85 141-231 13-105 (282)
450 2dr3_A UPF0273 protein PH0284; 88.7 0.2 6.8E-06 45.4 2.6 22 56-77 23-44 (247)
451 2w58_A DNAI, primosome compone 88.7 0.22 7.4E-06 44.0 2.8 21 57-77 55-75 (202)
452 2p65_A Hypothetical protein PF 88.6 0.19 6.3E-06 43.1 2.3 22 56-77 43-64 (187)
453 3crm_A TRNA delta(2)-isopenten 88.5 0.22 7.4E-06 48.4 2.8 24 55-78 4-27 (323)
454 3zvl_A Bifunctional polynucleo 88.4 0.22 7.6E-06 49.9 2.9 23 55-77 257-279 (416)
455 4f4c_A Multidrug resistance pr 88.4 0.21 7.3E-06 57.4 3.2 25 55-79 443-467 (1321)
456 3d3q_A TRNA delta(2)-isopenten 88.3 0.23 7.8E-06 48.6 2.9 23 56-78 7-29 (340)
457 1vma_A Cell division protein F 88.3 0.24 8.2E-06 47.7 3.0 24 55-78 103-126 (306)
458 4aby_A DNA repair protein RECN 88.2 0.096 3.3E-06 52.1 0.1 20 58-77 62-81 (415)
459 1g3q_A MIND ATPase, cell divis 88.2 1.5 5.1E-05 39.4 8.2 32 121-161 112-143 (237)
460 3g5u_A MCG1178, multidrug resi 88.1 0.21 7E-06 57.4 2.8 25 55-79 415-439 (1284)
461 1a7j_A Phosphoribulokinase; tr 88.1 0.2 7E-06 47.6 2.4 22 56-77 5-26 (290)
462 4b4t_L 26S protease subunit RP 88.1 0.54 1.9E-05 47.5 5.6 24 54-77 213-236 (437)
463 3v9p_A DTMP kinase, thymidylat 88.0 0.26 8.8E-06 45.3 2.9 23 55-77 24-46 (227)
464 3ux8_A Excinuclease ABC, A sub 87.9 0.15 5.1E-06 54.4 1.4 22 56-77 348-369 (670)
465 1xwi_A SKD1 protein; VPS4B, AA 87.9 0.88 3E-05 43.7 6.8 22 56-77 45-66 (322)
466 1zcb_A G alpha I/13; GTP-bindi 87.9 0.25 8.4E-06 48.7 2.9 24 54-77 31-54 (362)
467 1pzn_A RAD51, DNA repair and r 87.8 0.23 7.9E-06 48.6 2.6 23 56-78 131-153 (349)
468 1g8f_A Sulfate adenylyltransfe 87.7 0.34 1.2E-05 50.0 3.9 25 53-77 392-416 (511)
469 3qks_A DNA double-strand break 87.7 0.24 8.1E-06 44.5 2.4 21 57-77 24-44 (203)
470 1wcv_1 SOJ, segregation protei 87.6 0.86 2.9E-05 41.9 6.3 33 120-161 111-143 (257)
471 3co5_A Putative two-component 87.5 0.3 1E-05 40.9 2.8 22 56-77 27-48 (143)
472 1tf7_A KAIC; homohexamer, hexa 87.3 0.24 8.2E-06 51.2 2.5 21 56-76 39-59 (525)
473 2qmh_A HPR kinase/phosphorylas 87.1 0.4 1.4E-05 43.3 3.5 23 56-78 34-56 (205)
474 2ga8_A Hypothetical 39.9 kDa p 87.1 0.27 9.3E-06 48.3 2.6 23 56-78 24-46 (359)
475 1tue_A Replication protein E1; 87.1 0.21 7E-06 45.5 1.6 20 58-77 60-79 (212)
476 1ko7_A HPR kinase/phosphatase; 87.0 0.31 1E-05 47.1 2.9 26 56-81 144-169 (314)
477 1e69_A Chromosome segregation 86.9 0.28 9.7E-06 47.1 2.6 20 58-77 26-45 (322)
478 3ea0_A ATPase, para family; al 86.9 0.82 2.8E-05 41.3 5.7 32 121-161 119-150 (245)
479 1x6v_B Bifunctional 3'-phospho 86.9 0.37 1.3E-05 51.0 3.7 23 55-77 51-73 (630)
480 1u0l_A Probable GTPase ENGC; p 86.7 0.14 4.7E-06 49.0 0.2 93 122-226 64-167 (301)
481 1njg_A DNA polymerase III subu 86.7 0.29 9.9E-06 43.4 2.4 21 57-77 46-66 (250)
482 3g5u_A MCG1178, multidrug resi 86.6 0.3 1E-05 56.1 3.0 37 55-103 1058-1094(1284)
483 2qby_A CDC6 homolog 1, cell di 86.6 0.48 1.6E-05 45.7 4.1 23 56-78 45-67 (386)
484 4edh_A DTMP kinase, thymidylat 86.5 0.35 1.2E-05 43.8 2.9 22 56-77 6-27 (213)
485 2yv5_A YJEQ protein; hydrolase 86.3 0.044 1.5E-06 52.6 -3.5 77 147-226 75-163 (302)
486 2axn_A 6-phosphofructo-2-kinas 86.1 0.35 1.2E-05 50.0 3.0 24 54-77 33-56 (520)
487 2chg_A Replication factor C sm 86.0 0.33 1.1E-05 42.5 2.4 20 58-77 40-59 (226)
488 3tmk_A Thymidylate kinase; pho 86.0 0.44 1.5E-05 43.4 3.3 23 55-77 4-26 (216)
489 1sxj_E Activator 1 40 kDa subu 85.9 0.28 9.4E-06 47.3 1.9 21 58-78 38-58 (354)
490 3tqf_A HPR(Ser) kinase; transf 85.9 0.41 1.4E-05 42.3 2.9 25 56-80 16-40 (181)
491 3nbx_X ATPase RAVA; AAA+ ATPas 85.9 0.45 1.5E-05 49.0 3.6 22 57-78 42-63 (500)
492 3h4m_A Proteasome-activating n 85.8 0.39 1.3E-05 44.7 2.9 24 55-78 50-73 (285)
493 1fnn_A CDC6P, cell division co 85.7 0.36 1.2E-05 46.9 2.7 21 58-78 46-66 (389)
494 3qkt_A DNA double-strand break 85.5 0.35 1.2E-05 46.9 2.4 20 58-77 25-44 (339)
495 4b4t_K 26S protease regulatory 85.4 0.73 2.5E-05 46.4 4.8 23 55-77 205-227 (428)
496 3lv8_A DTMP kinase, thymidylat 85.4 0.46 1.6E-05 43.9 3.1 22 56-77 27-48 (236)
497 1m8p_A Sulfate adenylyltransfe 85.4 0.48 1.7E-05 49.6 3.6 25 53-77 393-417 (573)
498 3ld9_A DTMP kinase, thymidylat 85.3 0.45 1.5E-05 43.6 3.0 23 55-77 20-42 (223)
499 2qz4_A Paraplegin; AAA+, SPG7, 85.3 0.44 1.5E-05 43.6 2.9 22 56-77 39-60 (262)
500 3cf0_A Transitional endoplasmi 85.3 0.44 1.5E-05 45.3 3.0 24 55-78 48-71 (301)
No 1
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=6.9e-88 Score=674.12 Aligned_cols=363 Identities=53% Similarity=0.893 Sum_probs=328.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
|.++|+|||.||||||||||+|++.. +.++++||||++|+.|.+.+++.++++++++++|.++.+.++.||||||+.++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 56899999999999999999999655 88999999999999999999999999999999999999999999999999998
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak 214 (424)
++.+++++++|++++++||+++||+|++++.++.|+.++.||++|+..++.||.+++++.+++++.++.+..+.++ +
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~---~ 156 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGD---K 156 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---H
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccc---h
Confidence 8888899999999999999999999999999999999999999999999999999999999999999887765555 5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014450 215 KEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294 (424)
Q Consensus 215 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 294 (424)
......++++.+.++|+++.+++..+|+++|.++++.+.+++.||++|++|+.+.++ .+ +.+.+++++++..++.++
T Consensus 157 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~--n~~~~~v~~~~~~~~~~~ 233 (363)
T 1jal_A 157 EAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-EN--NPYLDRVREIAAKEGAVV 233 (363)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SS--CHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cc--cHHHHHHHHHHHHcCCCE
Confidence 566778899999999999999888789999988999888999999999999998776 22 678999999998888999
Q ss_pred EEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhhhhhhh
Q 014450 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFE 374 (424)
Q Consensus 295 v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~ 374 (424)
|++||++|++|++|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||||++|+||+||||+|||||+
T Consensus 234 i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~ 313 (363)
T 1jal_A 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFE 313 (363)
T ss_dssp EEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHH
T ss_pred EEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 375 KGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 375 ~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|||||||||+|+||++|||+++||++||+|++||||+|||||||+|||||
T Consensus 314 ~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 314 KGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp HHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred hccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-86 Score=669.61 Aligned_cols=366 Identities=43% Similarity=0.723 Sum_probs=300.6
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..++++|+|||+||||||||||+|++. .+.++++||||++|+.|.+.+++.+++++++.+.|.+..+.++.||||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~-~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS-QASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC-CccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 355789999999999999999999954 4589999999999999999999999999999999998888999999999999
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccC-CCc
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK-DSQ 211 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~-~~~ 211 (424)
++++.++++++.|++++++||+++||+|++++.++.|+.+..+|+++++.++.|+.+++++.++++++++.+...+ +
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g-- 175 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGG-- 175 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC------
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhccc--
Confidence 9988889999999999999999999999999999999999999999999999999999999999988887765432 2
Q ss_pred chhhHHHHHHHHHHHHHHHhCC-CCcc-CCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhh
Q 014450 212 SKLKEDAEKAALEKIQQALMDG-KPAR-SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 289 (424)
Q Consensus 212 Sak~~~~~~~ll~~i~~~L~~~-~~~~-~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~ 289 (424)
++.+....++++.+.++|+++ ++++ ..+|+++|.++++.++++|+||+||++|+.++++.+. .+.+.+++++++..
T Consensus 176 -~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~-~n~~~~~v~~~~~~ 253 (396)
T 2ohf_A 176 -DKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRK-KNKWLIKIKEWVDK 253 (396)
T ss_dssp -----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHHT-CCHHHHHHHHHHHH
T ss_pred -chhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhccc-ccHHHHHHHHHHHh
Confidence 256667889999999999998 7775 3479999989999999999999999999998888643 36788899998765
Q ss_pred --cCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhh
Q 014450 290 --LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAG 367 (424)
Q Consensus 290 --~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~ 367 (424)
++.++|++||++|.+|++|+++++.+||+++|++ ++++++++++|++||||+|||+||+|+|||||++|+||+||||
T Consensus 254 ~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~-~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g~ta~~aAg 332 (396)
T 2ohf_A 254 YDPGALVIPFSGALELKLQELSAEERQKYLEANMTQ-SALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAG 332 (396)
T ss_dssp HSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCC-CSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETTCBHHHHHH
T ss_pred hCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCC-chHHHHHHHHHHHhCCEEEECCCCCcceeEEecCCCcHHHHHh
Confidence 4678999999999999999999999999999986 9999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 368 VIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 368 ~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
+|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 333 ~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 333 KIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp TTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-
T ss_pred hhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999997
No 3
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=8.6e-85 Score=658.86 Aligned_cols=369 Identities=40% Similarity=0.651 Sum_probs=341.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
.++.+|||||+||||||||||+|+|...+.++++||||++|+.|.+.+++.|++.++.+++|.+.++.++.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 45689999999999999999999987767999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhh-ccCCC-c
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDS-Q 211 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~-~~~~~-~ 211 (424)
+.+.++++++.|++.++.+|++++|+|++++..+.|+.+..||++|+.+++.|+.+++++.+++.+.++.+. ...+. +
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti 177 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL 177 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 998889999999999999999999999999999999999999999999999999999999999999888876 44321 1
Q ss_pred chhhHHHHHHHHHHHHHHHhCC-CCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhc
Q 014450 212 SKLKEDAEKAALEKIQQALMDG-KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 290 (424)
Q Consensus 212 Sak~~~~~~~ll~~i~~~L~~~-~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~ 290 (424)
-++...++.++++++.+.|++| +++++.+|+++|.++++.+++++.||+||++|+.++++... .+++.+++++++.++
T Consensus 178 ~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~-~~~~~~~~~~~~~~~ 256 (392)
T 1ni3_A 178 EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQ-KNKYLPKIKKWIDEN 256 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTT-CCSSHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhccc-chHHHHHHHHHHHhc
Confidence 2578889999999999999999 99888789999999999999999999999999999877522 277899999998776
Q ss_pred C--CcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhh
Q 014450 291 Q--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGV 368 (424)
Q Consensus 291 ~--~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~ 368 (424)
+ .++|++||++|.+|++|+++++.+||+++| .++|++++++++|++||||+|||+||+|+|||||++|+||+||||+
T Consensus 257 ~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g-~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G~~a~~aag~ 335 (392)
T 1ni3_A 257 SPGDTLIPMSVAFEERLTNFTEEEAIEECKKLN-TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGV 335 (392)
T ss_dssp STTCCEEEECHHHHHHHTTSCHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETTCBHHHHHHH
T ss_pred CCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC-CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCCCcHHHHccc
Confidence 5 789999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 369 IHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 369 IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|||||+|||||||||+|+||++|||+++||++||+|++||||+|||||||+||||+
T Consensus 336 IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 336 IHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp HCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred cchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999996
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=5.5e-84 Score=649.20 Aligned_cols=363 Identities=52% Similarity=0.805 Sum_probs=325.2
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhcccccccc----ccCceEEEEeCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK----AVPASVEFVDIAGLV 132 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~----~~~~~i~lvDtpG~~ 132 (424)
++|+|||.||||||||||+|++. .+.++++||||++|+.|.+.+++.++++++.++++.+ +.+.++.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 58999999999999999999955 4788999999999999999999999999999999988 677889999999999
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcc
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~S 212 (424)
++++.+++++++|++++++||+++||+|++++.++.|+.+++||.+|+.+++.||.+++++.+++++.++.+..+. +
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~-~-- 157 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARA-D-- 157 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhcc-c--
Confidence 9998888999999999999999999999999999999999999999999999999999999999999888765432 2
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCC
Q 014450 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292 (424)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (424)
++.....++++++.++|+++.+.++.+|++++.+.++.+.+++.||++|++|+.++++.+..++.+.++++++++.++.
T Consensus 158 -~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~ 236 (368)
T 2dby_A 158 -RERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGA 236 (368)
T ss_dssp -GGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTC
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCC
Confidence 4556677889999999999988887789888889999999999999999999998877542226788999999888889
Q ss_pred cEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCCCChhhhhhhhhhh
Q 014450 293 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSD 372 (424)
Q Consensus 293 ~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd 372 (424)
++|++||++|++|.+|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||+|++|+||+||||+||||
T Consensus 237 ~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d 316 (368)
T 2dby_A 237 EVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSD 316 (368)
T ss_dssp EEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHH
T ss_pred eEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014450 373 FEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 424 (424)
Q Consensus 373 ~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 424 (424)
|+|||||||||+|+||++|||+++||++||+|++||||+|||||||+|||||
T Consensus 317 ~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 317 MERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp HHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred HHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=7.7e-56 Score=449.78 Aligned_cols=337 Identities=25% Similarity=0.361 Sum_probs=234.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEe----ecCCCcchhhc-----cccccccccCceEEEEe
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV----AVPDPRLHVLS-----GLSKSQKAVPASVEFVD 127 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~----~~~~~~~d~l~-----~~~~~~~~~~~~i~lvD 127 (424)
++|+|||.||||||||||+|++.. +.++++||||++++.|.+ .+++.++++++ ..+.+.+ ..++.|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~--~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA--LIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE--EEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc--eEEEEEEE
Confidence 489999999999999999999655 889999999999999974 46676654433 1112211 25699999
Q ss_pred CCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce-eeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhc
Q 014450 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI-VHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (424)
Q Consensus 128 tpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~-~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~ 206 (424)
|||+.++++.+++++++|+.++++||+++||+|+++...+ -.+...+||++|+++++.||.+++++.++++++++.+..
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~ 157 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRI 157 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTT
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999988888888999999999999999999999886221 111125699999999999999999999999999888665
Q ss_pred cCCCcchhhHHH--------HHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCc
Q 014450 207 AKDSQSKLKEDA--------EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNP 278 (424)
Q Consensus 207 ~~~~~Sak~~~~--------~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~ 278 (424)
..+..++..... -.+.+..+.+.+..+.+. .+|++++...+....+++.+|++|++|+.|.. . ++
T Consensus 158 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~---~--~~ 230 (397)
T 1wxq_A 158 KLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA---S--DE 230 (397)
T ss_dssp TSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---C--HH
T ss_pred hhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc---c--hH
Confidence 433322211100 024566677777666553 36998887778877888999999999999743 2 45
Q ss_pred chHHHHHHHhhcCCcEEEecHHhHHHHcC---------------------CCHHHHH-------HHHHHcCCCCchhHHH
Q 014450 279 HVNEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEERV-------EYLASLGVSESGLGNL 330 (424)
Q Consensus 279 ~~~~i~~~~~~~~~~~v~~sa~~e~~l~~---------------------l~~e~~~-------~~l~~~gl~~~~l~~l 330 (424)
..+++.+.+...+.+++++||+.|.++.+ +++++++ +||+.+| ++|++++
T Consensus 231 ~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g--~~g~~~~ 308 (397)
T 1wxq_A 231 QIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG--STGVQEV 308 (397)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS--SCSHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC--cchHHHH
Confidence 56677666554577899999999999976 3455444 6777888 7999999
Q ss_pred HH-HHHhhcCcEEEEecCC----------CCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHH
Q 014450 331 IR-STYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399 (424)
Q Consensus 331 i~-~~~~~L~li~~fT~g~----------~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~ 399 (424)
|+ .+|++|+|++|||+|+ ++++||++++|+||+|+|++|||||+++|++|+ +.
T Consensus 309 i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~----------------~~ 372 (397)
T 1wxq_A 309 INRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI----------------NA 372 (397)
T ss_dssp HHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE----------------ET
T ss_pred HHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH----------------Hh
Confidence 96 5699999999999873 477999999999999999999999999999998 12
Q ss_pred cCCccccCCCceecCCCEEEEEe
Q 014450 400 KGLLRSEGKDYIVQEGDVMLFRF 422 (424)
Q Consensus 400 ~g~~r~~Gkdy~v~dgDii~~~f 422 (424)
.|+. ++|++|+|+|||||+|.-
T Consensus 373 ~~~~-~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 373 RTKR-RVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp TTCS-BCCTTCCCCTTEEEEEEE
T ss_pred cCCE-EcCCCccccCCCEEEEEe
Confidence 3554 589999999999999974
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-56 Score=449.29 Aligned_cols=293 Identities=18% Similarity=0.277 Sum_probs=212.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
+...+|||||+||||||||||+|| +..+.++++||||++|+.|++.+++ .+++|+||||+++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt-~~~~~v~~~pftT~~~~~g~~~~~~-----------------~~i~l~D~pGl~~ 131 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLT-GTESEAAEYEFTTLVTVPGVIRYKG-----------------AKIQMLDLPGIID 131 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHH-SBCCCGGGTCSSCCCEEEEEEEETT-----------------EEEEEEECGGGCC
T ss_pred cCCCeEEEECCCCCCHHHHHHHHh-CCCCcccCCCCceeeeeeEEEEeCC-----------------cEEEEEeCCCccC
Confidence 335799999999999999999999 5568899999999999999999987 7799999999999
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHH-HHhhccCCCcc
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQS 212 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~-i~k~~~~~~~S 212 (424)
+++.+.+++++|++.+++||+|+||+|++ +|+.+++.++.||..+++...++.... +++. +
T Consensus 132 ~a~~~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~----d-- 193 (376)
T 4a9a_A 132 GAKDGRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKK----E-- 193 (376)
T ss_dssp C-----CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEEC----S--
T ss_pred CchhhhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHh----h--
Confidence 99999999999999999999999999995 577788888887765543321111000 0010 0
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCC
Q 014450 213 KLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 292 (424)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~ 292 (424)
+.+ +..........++.++...+...++++.+|++|.+|+.++++. + +.+.......
T Consensus 194 -~~g-------------i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~--------d-~~~~~~~~~~ 250 (376)
T 4a9a_A 194 -KGG-------------ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI--------D-VLEASSRRYM 250 (376)
T ss_dssp -SSC-------------EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHH--------H-HHTTTTCEEE
T ss_pred -hhh-------------hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHH--------H-HHHHHHhhcc
Confidence 000 0001111222466666666667778899999999998765432 1 1111112234
Q ss_pred cEEEecHHhHHHHcCCCHHHHHH------HHHHcCCCCchhHHHHHHHHhhcCcEEEEecCCCCcceEEecCC-----CC
Q 014450 293 GRVTISAQVEAELTELPSEERVE------YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG-----MT 361 (424)
Q Consensus 293 ~~v~~sa~~e~~l~~l~~e~~~~------~l~~~gl~~~~l~~li~~~~~~L~li~~fT~g~~e~~aw~~~~g-----st 361 (424)
+++.++++.+. ++.++.+. ++...+..+++++++++++|++|||++|||+||+|+|||++|.| +|
T Consensus 251 p~i~v~nKid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at 326 (376)
T 4a9a_A 251 PAIYVLNKIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCS 326 (376)
T ss_dssp CEEEEEECGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCB
T ss_pred ceEEEEecccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCc
Confidence 56666665532 22222221 22223456789999999999999999999999999999997655 55
Q ss_pred hhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014450 362 APQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 421 (424)
Q Consensus 362 a~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 421 (424)
+.|+|+.||+||.++|+||+|||-+ ||++| |++||||+|||||||+|.
T Consensus 327 ~~D~a~~ih~d~~~~F~~a~v~Gs~----------~K~~~--r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 327 VKDFCNQIHKSLVDDFRNALVYGSS----------VKHQP--QYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp HHHHHHHHCGGGGGGEEEEEEESTT----------SSSSS--EEECTTCBCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhHhhhcCcc----------cCCCC--CccCCCcEEcCCCEEEEE
Confidence 6677999999999999999999843 67766 689999999999999985
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.86 E-value=4.5e-22 Score=195.18 Aligned_cols=198 Identities=22% Similarity=0.294 Sum_probs=143.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecC-CCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~-~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
.....|+|+|.||||||||+|+|+|...+.+++.|+||++...+....+ + .++.||||||+.
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~ 70 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIY 70 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCC
Confidence 3457899999999999999999998888889999999999999998876 4 789999999998
Q ss_pred CCC--Cc-ccchhhhhhhhhhccceEEEEeecCCCCceeee---ccccccCCchhhhhhhhhcccHHHH------HHHHH
Q 014450 133 KGA--SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV---NGKVDPKSDVDVINLELVFSDLDQI------EKRME 200 (424)
Q Consensus 133 ~~~--~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~---~~~~dp~~d~~~i~~el~~~~~~~i------~~~~~ 200 (424)
++. .. ++.+...+...++.||++++|+|+++....... ...... .+.+++ +++|++|.+ .....
T Consensus 71 ~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-~~~pvi---lV~NK~Dl~~~~~~~~~~~~ 146 (308)
T 3iev_A 71 EPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-LNKPVI---VVINKIDKIGPAKNVLPLID 146 (308)
T ss_dssp CCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-GCCCEE---EEEECGGGSSSGGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-cCCCEE---EEEECccCCCCHHHHHHHHH
Confidence 755 22 344556667888999999999999865321000 000000 011222 334555443 11223
Q ss_pred HHHhhcc-CC---CcchhhHHHHHHHHHHHHHHHhCCCCccCCC-CCHH-----HHHHHH-HHhhhhccceEEecccccc
Q 014450 201 KLKKGKA-KD---SQSKLKEDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 269 (424)
Q Consensus 201 ~i~k~~~-~~---~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----e~e~ir-~~~~l~~kpi~y~~nv~~~ 269 (424)
.+.+... .. .+||+++.+++++++.+.+.+++++++++.+ +++. -.+++| +++..+.+++||++.+..+
T Consensus 147 ~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~ 226 (308)
T 3iev_A 147 EIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKIN 226 (308)
T ss_dssp HHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEE
T ss_pred HHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeE
Confidence 3333321 11 2799999999999999999999999988863 4544 267888 7888999999999998877
Q ss_pred ccC
Q 014450 270 DLA 272 (424)
Q Consensus 270 ~~~ 272 (424)
.+.
T Consensus 227 ~~~ 229 (308)
T 3iev_A 227 EIK 229 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 765
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.84 E-value=5.1e-21 Score=187.15 Aligned_cols=197 Identities=22% Similarity=0.216 Sum_probs=140.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+|||.||||||||+|+|+|...+.+++.|+||++...+.+..++ .++.||||||+.++.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~ 69 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPM 69 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchh
Confidence 357999999999999999999988888899999999998888776554 789999999998654
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccc-cCCchhhhhhhhhcccHHHHHH-H--HHHHHhhccC
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVD-PKSDVDVINLELVFSDLDQIEK-R--MEKLKKGKAK 208 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~d-p~~d~~~i~~el~~~~~~~i~~-~--~~~i~k~~~~ 208 (424)
+. ++.+...+...++.||++++|+|+++..... .+..... ...+.+.+ ++.|++|.... . ...+......
T Consensus 70 ~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~i---lV~NK~Dl~~~~~~~~~~~~~~~~~ 146 (301)
T 1wf3_A 70 DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL---LVGNKLDAAKYPEEAMKAYHELLPE 146 (301)
T ss_dssp SHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEE---EEEECGGGCSSHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEE---EEEECcccCCchHHHHHHHHHhcCc
Confidence 43 3334566778899999999999997653210 0000000 00122223 44666665421 1 1222222111
Q ss_pred ---CCcchhhHHHHHHHHHHHHHHHhCCCCccCCC-C-CHH-H----HHHHH-HHhhhhccceEEeccccccccC
Q 014450 209 ---DSQSKLKEDAEKAALEKIQQALMDGKPARSVT-L-NDF-E----RDSIK-QLCLLTMKPIIYVANVAESDLA 272 (424)
Q Consensus 209 ---~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~-~-t~~-e----~e~ir-~~~~l~~kpi~y~~nv~~~~~~ 272 (424)
.++||+++.+++++++.+.+.+++++++|+.+ + |+. + .+.+| +++..+..++||.+.+..+++.
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~ 221 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVA 221 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEE
Confidence 23799999999999999999999998888753 5 443 2 57778 7788899999999998887775
No 9
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.78 E-value=6.7e-20 Score=145.28 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=69.4
Q ss_pred HHhhcCcEEEEecCCC----CcceEEe-cCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCC
Q 014450 334 TYSLLGLRTYFTSGEK----ETKAWTI-RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 408 (424)
Q Consensus 334 ~~~~L~li~~fT~g~~----e~~aw~~-~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gk 408 (424)
.|+.|+||+|||+.++ -.+|.++ ++|+|+.|+|.+||+||.+.|+||.|||.+ ||..| |++|+
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~s----------aK~~~--qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS----------VKHNP--QKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTT----------SSSSS--EEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccc----------ccCCC--EECCC
Confidence 4789999999996644 4689999 999999999999999999999999999977 88776 57999
Q ss_pred CceecCCCEEEEEe
Q 014450 409 DYIVQEGDVMLFRF 422 (424)
Q Consensus 409 dy~v~dgDii~~~f 422 (424)
+|+|+|||||+|--
T Consensus 73 dh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 73 DHTLEDEDVIQIVK 86 (93)
T ss_dssp SCCCCSSEEECEEE
T ss_pred CcEecCCCEEEEEe
Confidence 99999999999864
No 10
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.77 E-value=4.1e-19 Score=173.57 Aligned_cols=195 Identities=20% Similarity=0.176 Sum_probs=133.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC-CC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV-KG 134 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~-~~ 134 (424)
..+|+|+|+||||||||+|+|+|...+.+++.|+||++...|.+..++ .++.|+||||+. ..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~ 70 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEE 70 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccc
Confidence 358999999999999999999988878889999999998888877654 789999999985 22
Q ss_pred CCc-ccchhhhhhhhhhccceEEEEeecCCCCce--eeeccccccCCchhhhhhhhhcccHHHHH------HHHHHHHhh
Q 014450 135 ASQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKSDVDVINLELVFSDLDQIE------KRMEKLKKG 205 (424)
Q Consensus 135 ~~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~d~~~i~~el~~~~~~~i~------~~~~~i~k~ 205 (424)
... +..+...+...++.+|++++|+|+++ ..- ..+...... ...+.+ +++|++|... ..+..+.+.
T Consensus 71 ~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-~~~P~i---lvlNK~D~~~~~~~~~~~l~~l~~~ 145 (301)
T 1ega_A 71 KRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-GKAPVI---LAVNKVDNVQEKADLLPHLQFLASQ 145 (301)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-SSSCEE---EEEESTTTCCCHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-cCCCEE---EEEECcccCccHHHHHHHHHHHHHh
Confidence 111 11233445677899999999999965 210 000000000 011122 3345554432 122222222
Q ss_pred ccC---CCcchhhHHHHHHHHHHHHHHHhCCCCccCC-CCCHH-----HHHHHH-HHhhhhccceEEeccccccccC
Q 014450 206 KAK---DSQSKLKEDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDLA 272 (424)
Q Consensus 206 ~~~---~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----e~e~ir-~~~~l~~kpi~y~~nv~~~~~~ 272 (424)
... -.+||+++.++.++++.+.+.+++++++|+. .+++. ..+++| +++..+..++||.+.+..+++.
T Consensus 146 ~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~ 222 (301)
T 1ega_A 146 MNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFV 222 (301)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEE
T ss_pred cCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEE
Confidence 111 1269999999999999999999999888875 24433 257778 7788899999999888877664
No 11
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.75 E-value=3.1e-19 Score=178.88 Aligned_cols=202 Identities=21% Similarity=0.267 Sum_probs=105.8
Q ss_pred ccccccccchhhhhcCCCCcchhHHHhhhcccccCCcchhh---hh--------------------hhhhhhccccCCc-
Q 014450 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS---SR--------------------RRFSSASKISMSL- 57 (424)
Q Consensus 2 v~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------------~~~~~~~~~~~~~- 57 (424)
+++|+++|.+|+| ..|.++.+ +.++++..|+++.. .+ +...++++...+.
T Consensus 107 ~~la~l~~~~~rl-~~~~~l~~-----~~~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~ 180 (364)
T 2qtf_A 107 IELARLKYELPII-KETYTKSK-----IGEQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIP 180 (364)
T ss_dssp HHHHHHHHHHHHH-HHC--------------------------CHHHHHHHHHHHHHHHHHHHHC-------------CC
T ss_pred HHHHHHhhhchhh-hhhhHHHH-----hcCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc
Confidence 6899999999999 44444333 33344444444331 00 0011111222234
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
.|+|+|+||||||||+|+|+| ....+++++++|+++..+.+.+++ ..+.++||||++...+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~-~~~~~~~~~~~T~d~~~~~i~~~g-----------------~~v~l~DT~G~i~~lp- 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTG-LTQKVDTKLFTTMSPKRYAIPINN-----------------RKIMLVDTVGFIRGIP- 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHC-C-----------CCSCEEEEEETT-----------------EEEEEEECCCBCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHC-CCccccCCcccccCCEEEEEEECC-----------------EEEEEEeCCCchhcCC-
Confidence 499999999999999999995 446888999999999999998876 5689999999876433
Q ss_pred ccchh---hhhhhhhhccceEEEEeecCCCC--ceee------eccccccCCchhhhhhhhhcccHHHHH----HHHHHH
Q 014450 138 GEGLG---NKFLSHIREVDSILQVVRCFEDN--DIVH------VNGKVDPKSDVDVINLELVFSDLDQIE----KRMEKL 202 (424)
Q Consensus 138 ~~~~~---~~~l~~i~~aD~il~Vvda~~~~--~~~~------~~~~~dp~~d~~~i~~el~~~~~~~i~----~~~~~i 202 (424)
..+. ..++..++.||+++||+|++++. .... +.... ...+.+++ +++|++|.+. .+...+
T Consensus 242 -~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~i---lV~NK~Dl~~~~~~~~~~~~ 316 (364)
T 2qtf_A 242 -PQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPIL---VTLNKIDKINGDLYKKLDLV 316 (364)
T ss_dssp -GGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEE---EEEECGGGCCSCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEE---EEEECCCCCCchHHHHHHHH
Confidence 2222 34466789999999999998754 1100 00000 00112222 2345554322 111111
Q ss_pred ----Hhh-c---cCCCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 203 ----KKG-K---AKDSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 203 ----~k~-~---~~~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
... . +...+||+++.+++++++.|.+.+...
T Consensus 317 ~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 317 EKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp HHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence 111 1 112379999999999999999888653
No 12
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.74 E-value=3.2e-19 Score=177.32 Aligned_cols=159 Identities=29% Similarity=0.464 Sum_probs=117.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|||+||||||||+|+|+ .....++++||||.+|+.+.+.+++. ..+.|+||||++++++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~-~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSE-EECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTT
T ss_pred CeeeeeCCCCCCHHHHHHHHH-cCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCccccc
Confidence 579999999999999999999 55567899999999999999888751 5699999999988777
Q ss_pred cccchhhhhhhhhhccceEEEEeecCC---CCceeeec------ccccc-CCchhhhhhhhhcccHHHHHH--HHHHHHh
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFE---DNDIVHVN------GKVDP-KSDVDVINLELVFSDLDQIEK--RMEKLKK 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~---~~~~~~~~------~~~dp-~~d~~~i~~el~~~~~~~i~~--~~~~i~k 204 (424)
...+++..|+.+++.+|+++||+|+++ ...+..+. ...++ +.+.+++ +++|++|.... ....+.+
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~i---lV~NK~Dl~~~~e~~~~l~~ 298 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQI---IVANKMDMPEAAENLEAFKE 298 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBC---BEEECTTSTTHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEE---EEEECccCCCCHHHHHHHHH
Confidence 777889999999999999999999986 32211110 00111 1233333 55677765432 2233333
Q ss_pred hcc----CCCcchhhHHHHHHHHHHHHHHHhCCCC
Q 014450 205 GKA----KDSQSKLKEDAEKAALEKIQQALMDGKP 235 (424)
Q Consensus 205 ~~~----~~~~Sak~~~~~~~ll~~i~~~L~~~~~ 235 (424)
... ...+||+++.+++++++.|.+.+.+.+.
T Consensus 299 ~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 299 KLTDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp HCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred HhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 222 2347999999999999999999976543
No 13
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.68 E-value=4.4e-18 Score=176.28 Aligned_cols=160 Identities=26% Similarity=0.301 Sum_probs=109.1
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
+....+++|+|+|+||||||||+|+|++...+.++++|+||+++..+.+.+++ ..+.||||||
T Consensus 238 ~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-----------------~~~~l~DTaG 300 (482)
T 1xzp_A 238 ILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-----------------ILFRIVDTAG 300 (482)
T ss_dssp HHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-----------------EEEEEEESSC
T ss_pred hhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-----------------eEEEEEECCC
Confidence 33445689999999999999999999987788899999999999999988865 6699999999
Q ss_pred CC-CCCCcccchh-hhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-HHHHHHhhcc
Q 014450 131 LV-KGASQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK-RMEKLKKGKA 207 (424)
Q Consensus 131 ~~-~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~~ 207 (424)
+. ++.+..+.++ ..++..++.||++|+|+|+++........ ...-+.+.+++ +++||+|.... ....+.+...
T Consensus 301 ~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l~~~pii---vV~NK~DL~~~~~~~~~~~~~~ 376 (482)
T 1xzp_A 301 VRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERIKNKRYL---VVINKVDVVEKINEEEIKNKLG 376 (482)
T ss_dssp CCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHHTTSSEE---EEEEECSSCCCCCHHHHHHHHT
T ss_pred ccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHhcCCCEE---EEEECcccccccCHHHHHHHhc
Confidence 98 6665555554 45678899999999999997754311000 00000111111 23344432211 0011111111
Q ss_pred ----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 208 ----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 208 ----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+||+++.+++++++.+.+.+.
T Consensus 377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 TDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp CSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 123799999999999999988754
No 14
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.67 E-value=5.4e-18 Score=175.43 Aligned_cols=163 Identities=19% Similarity=0.195 Sum_probs=84.3
Q ss_pred hhccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeC
Q 014450 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (424)
Q Consensus 49 ~~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDt 128 (424)
+++....+++|+|+|.||||||||+|+|++...+.++++|+||++.....+.+++ ..+.||||
T Consensus 226 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-----------------~~l~liDT 288 (476)
T 3gee_A 226 HGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-----------------TMFRLTDT 288 (476)
T ss_dssp HHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-----------------EEEEEEC-
T ss_pred hhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEEC
Confidence 3444555789999999999999999999977788999999999999988888766 67999999
Q ss_pred CCCCCCCCcccchh-hhhhhhhhccceEEEEeecCCCCceee---eccccccCCchhhhhhhhhcccHHHHHHHH---HH
Q 014450 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVH---VNGKVDPKSDVDVINLELVFSDLDQIEKRM---EK 201 (424)
Q Consensus 129 pG~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~---~~~~~dp~~d~~~i~~el~~~~~~~i~~~~---~~ 201 (424)
||+.+.....+.++ ...+..++.||++++|+|+++.....+ .......+.+.+++ +++||.|...... ..
T Consensus 289 ~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piI---vV~NK~Dl~~~~~~~~~~ 365 (476)
T 3gee_A 289 AGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFL---TVANKLDRAANADALIRA 365 (476)
T ss_dssp -------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEE---EEEECTTSCTTTHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEE---EEEECcCCCCccchhHHH
Confidence 99976544333332 456778899999999999987653210 00000011122222 3345554332211 11
Q ss_pred HHhh--ccCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LKKG--KAKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~k~--~~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.+. .+...+||+++.+++++++.+.+.+.
T Consensus 366 l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 366 IADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred HHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 2221 11223799999999999999999997
No 15
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.67 E-value=1.3e-16 Score=152.26 Aligned_cols=150 Identities=23% Similarity=0.303 Sum_probs=104.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||||+|+ +....++++|++|.+...+.+..++ ..+.+|||||+....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~-g~~~~v~~~pg~Tv~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALT-NANQRVGNWPGVTVEKKTGEFLLGE-----------------HLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHH-TTSEEEEECTTSSSEEEEEEEEETT-----------------EEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHH-CCCCCccCCCCceEEEEEEEEEECC-----------------eEEEEEeCCCcccccc
Confidence 589999999999999999999 5568899999999999999988776 5799999999976543
Q ss_pred ------cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhh
Q 014450 137 ------QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKG 205 (424)
Q Consensus 137 ------~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~ 205 (424)
..+.+...++.. +.+|++++|+|+++......+...... ..++++ +++|++|..+.+ ...+.+.
T Consensus 64 ~~~~~~~~e~i~~~~~~~-~~~d~vi~VvDas~~~~~~~l~~~l~~-~~~pvi---lv~NK~Dl~~~~~~~~~~~~l~~~ 138 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVID-LEYDCIINVIDACHLERHLYLTSQLFE-LGKPVV---VALNMMDIAEHRGISIDTEKLESL 138 (256)
T ss_dssp -----CHHHHHHHHHHHH-SCCSEEEEEEEGGGHHHHHHHHHHHTT-SCSCEE---EEEECHHHHHHTTCEECHHHHHHH
T ss_pred cccCCCHHHHHHHHHHhh-CCCCEEEEEeeCCCchhHHHHHHHHHH-cCCCEE---EEEEChhcCCcCCcHHHHHHHHHH
Confidence 122233333322 789999999999874332111110100 122333 567888876652 2233332
Q ss_pred ccC--CCcchhhHHHHHHHHHHHHHH
Q 014450 206 KAK--DSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 206 ~~~--~~~Sak~~~~~~~ll~~i~~~ 229 (424)
... ..+||+++.+++++++.+.+.
T Consensus 139 lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 139 LGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 222 136999999999999999887
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.66 E-value=1.3e-16 Score=163.63 Aligned_cols=155 Identities=26% Similarity=0.263 Sum_probs=93.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|||.||||||||||+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-----------------KTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-----------------EEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-----------------eEEEEEECCCcccccc
Confidence 58999999999999999999987778899999999999999988876 6699999999865322
Q ss_pred c--ccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHHHHHHH-Hhh--ccCC
Q 014450 137 Q--GEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL-KKG--KAKD 209 (424)
Q Consensus 137 ~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i-~k~--~~~~ 209 (424)
. .+.+..++..++++||++++|+|++...... .+...... .+.+++ ++.|++|..+...... ... ...+
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~-~~~p~i---lv~NK~D~~~~~~~~~~~~~~~lg~~ 140 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRK-STVDTI---LVANKAENLREFEREVKPELYSLGFG 140 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHH-HTCCEE---EEEESCCSHHHHHHHTHHHHGGGSSC
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEE---EEEeCCCCccccHHHHHHHHHhcCCC
Confidence 1 2345567778899999999999997642210 00000000 011222 4456665433211111 111 1111
Q ss_pred ---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 210 ---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 210 ---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+||+++.++.++++.+.+.+++
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CEEEEeccCCCCHHHHHHHHHHhccc
Confidence 27999999999999999998874
No 17
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.65 E-value=3e-16 Score=151.15 Aligned_cols=156 Identities=21% Similarity=0.267 Sum_probs=105.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|+|. ...++++|++|.++..+.+...+ ..+.+|||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~-~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT-CEEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCccc
Confidence 479999999999999999999955 47899999999999999988765 569999999997654
Q ss_pred Ccc--cchhhhhh---hhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhh
Q 014450 136 SQG--EGLGNKFL---SHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKG 205 (424)
Q Consensus 136 ~~~--~~~~~~~l---~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~ 205 (424)
... ..+...+. ...+.+|++++|+|+++......+...... .+++++ +++|++|..+.+ ...+.+.
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~-~~~p~i---vv~NK~Dl~~~~~~~~~~~~l~~~ 140 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLE-LGIPCI---VALNMLDIAEKQNIRIEIDALSAR 140 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHH-HTCCEE---EEEECHHHHHHTTEEECHHHHHHH
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHh-cCCCEE---EEEECccchhhhhHHHHHHHHHHh
Confidence 211 11222221 224789999999999764321111000000 012233 457888876542 2233322
Q ss_pred ccC--CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 206 KAK--DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 206 ~~~--~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
... -.+||+++.|++++++.+.+.++..
T Consensus 141 lg~~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 141 LGCPVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp HTSCEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 221 2369999999999999998888654
No 18
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.65 E-value=7.9e-16 Score=156.48 Aligned_cols=90 Identities=39% Similarity=0.741 Sum_probs=77.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
...|+|||+||||||||+|+|+ +....++++|++|..|+.|.+..++ ...+.++||||++++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls-g~~~~i~~~~ftTl~p~~G~V~~~~----------------~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSE----------------EERFTLADIPGIIEGA 219 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC-SSCCEECCCTTCSSCCEEEEEECSS----------------SCEEEEEECCCCCCCG
T ss_pred CCEEEEECCCCCcHHHHHHHHH-cCCccccCcccceecceeeEEEecC----------------cceEEEEeccccccch
Confidence 4579999999999999999999 5556788999999999999988764 1468999999998876
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+...+++..|+.++..+|.+++|+|++
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETT
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCc
Confidence 666667778888899999999999984
No 19
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.64 E-value=4.9e-17 Score=145.03 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=104.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+|+|.||||||||+|+|++...+.++++|++|++...+.+.+.+ ..+.+|||||+.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 66 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------------MPLHIIDTAGLREAS 66 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------------EEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------------eEEEEEECCCcccch
Confidence 579999999999999999999977666788999999999888887765 568999999996543
Q ss_pred Ccccch-hhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHHHHHHHh-hccC
Q 014450 136 SQGEGL-GNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAK 208 (424)
Q Consensus 136 ~~~~~~-~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~~~~i~k-~~~~ 208 (424)
...+.+ ....+..++.+|++++|+|+++....... ...+. ..+++++ ++.|+.|..+........ ....
T Consensus 67 ~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~-~~~~~~~~~~~~~~p~i---lv~NK~Dl~~~~~~~~~~~~~~~ 142 (172)
T 2gj8_A 67 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPIT---VVRNKADITGETLGMSEVNGHAL 142 (172)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEE---EEEECHHHHCCCCEEEEETTEEE
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHH-HHHHHHHHhcccCCCEE---EEEECccCCcchhhhhhccCCce
Confidence 322211 12345678999999999999876542110 00000 0123333 567888864321000000 0001
Q ss_pred CCcchhhHHHHHHHHHHHHHHHh
Q 014450 209 DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 209 ~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..+||+++.+++++++.+.+.+.
T Consensus 143 ~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 143 IRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCHHHHHHHHHHHhh
Confidence 12699999999999999988774
No 20
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.61 E-value=2.5e-15 Score=143.47 Aligned_cols=154 Identities=22% Similarity=0.333 Sum_probs=105.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|+ +....++++|++|.+...+.+...+ ..+.||||||.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~-g~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALT-GTKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHH-TTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHH-CCCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCccC
Confidence 4799999999999999999999 5556689999999999888887654 679999999997554
Q ss_pred Cc--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
+. .+.+...++.. ..+|++++|+|+++............. ...+++ +++|++|..+++ ...+.+....
T Consensus 67 ~~~~~e~v~~~~~~~-~~~d~ii~V~D~t~~~~~~~~~~~l~~-~~~pvi---lv~NK~Dl~~~~~i~~~~~~l~~~lg~ 141 (258)
T 3a1s_A 67 YSSIDEKIARDYLLK-GDADLVILVADSVNPEQSLYLLLEILE-MEKKVI---LAMTAIDEAKKTGMKIDRYELQKHLGI 141 (258)
T ss_dssp SSSHHHHHHHHHHHH-SCCSEEEEEEETTSCHHHHHHHHHHHT-TTCCEE---EEEECHHHHHHTTCCBCHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHhh-cCCCEEEEEeCCCchhhHHHHHHHHHh-cCCCEE---EEEECcCCCCccchHHHHHHHHHHcCC
Confidence 32 22233344332 689999999999875432111000000 122333 557888876542 1223222221
Q ss_pred --CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 209 --DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 209 --~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+||+++.++.++++.+.+.+..
T Consensus 142 ~vi~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 142 PVVFTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CEEEEEeeCCcCHHHHHHHHHHHhhc
Confidence 136999999999999999998764
No 21
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.61 E-value=5.3e-16 Score=149.36 Aligned_cols=153 Identities=21% Similarity=0.351 Sum_probs=102.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||||+|+| ....++++|++|.++..+.+.. + ..+.+|||||.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g-~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG-HNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC-CCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccC
Confidence 47999999999999999999994 4567899999999998888754 3 569999999986543
Q ss_pred Cc--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
.. .+.+...++.. ..+|++++|+|+++......+...... ..++++ +++|++|..+++ ...+.+....
T Consensus 64 ~~~~~e~v~~~~~~~-~~~d~vi~V~D~t~~e~~~~~~~~l~~-~~~p~i---lv~NK~Dl~~~~~~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 64 PYSPEAKVARDYLLS-QRADSILNVVDATNLERNLYLTTQLIE-TGIPVT---IALNMIDVLDGQGKKINVDKLSYHLGV 138 (272)
T ss_dssp CSSHHHHHHHHHHHT-TCCSEEEEEEEGGGHHHHHHHHHHHHH-TCSCEE---EEEECHHHHHHTTCCCCHHHHHHHHTS
T ss_pred CCChHHHHHHHHHhc-CCCCEEEEEecCCchHhHHHHHHHHHh-cCCCEE---EEEEChhhCCcCCcHHHHHHHHHHcCC
Confidence 21 22333344332 479999999999764321111000000 112233 457777776542 1223222221
Q ss_pred --CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 209 --DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 209 --~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+||+++.+++++++.+.+.+..
T Consensus 139 ~vi~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 PVVATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHSCTT
T ss_pred CEEEEEccCCCCHHHHHHHHHHHHhh
Confidence 236999999999999999887754
No 22
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.60 E-value=1.6e-15 Score=133.81 Aligned_cols=152 Identities=21% Similarity=0.290 Sum_probs=94.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||||||||+|+|+ +....++++|++|++...+.+.+.+ ..+.+|||||+.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~-~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLT 64 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-CCSSSCC-----CCCCCEEEEEETT-----------------EEEEEEECCCCSCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHh-CCCeeccCCCCcceeeeEEEEEECC-----------------cEEEEEECCCcccCC
Confidence 3689999999999999999999 5555678889999998888877654 569999999987543
Q ss_pred Cc--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
.. .+.+...++. ..++|++++|+|+++............. ...+++ ++.++.|..+.+ ...+.+....
T Consensus 65 ~~~~~~~~~~~~~~-~~~~~~~i~v~D~~~~~~~~~~~~~~~~-~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (165)
T 2wji_A 65 ANSIDEIIARDYII-NEKPDLVVNIVDATALERNLYLTLQLME-MGANLL---LALNKMDLAKSLGIEIDVDKLEKILGV 139 (165)
T ss_dssp SSSHHHHHHHHHHH-HHCCSEEEEEEETTCHHHHHHHHHHHHH-TTCCEE---EEEECHHHHHHTTCCCCHHHHHHHHTS
T ss_pred CcchhHHHHHHHHh-cCCCCEEEEEecCCchhHhHHHHHHHHh-cCCCEE---EEEEchHhccccChhhHHHHHHHHhCC
Confidence 21 1122222222 2479999999999764321110000000 122233 457777765431 1222221111
Q ss_pred --CCcchhhHHHHHHHHHHHHHHH
Q 014450 209 --DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 209 --~~~Sak~~~~~~~ll~~i~~~L 230 (424)
..+||+++.+++++++.+.+.+
T Consensus 140 ~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 2379999999999999988766
No 23
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.59 E-value=2.3e-17 Score=170.15 Aligned_cols=163 Identities=21% Similarity=0.282 Sum_probs=97.7
Q ss_pred hccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 50 ~~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
++....+++|+|+|.||||||||+|+|++...+.+++.|+||++.....+.+++ ..+.|||||
T Consensus 218 ~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~v~liDT~ 280 (462)
T 3geh_A 218 GELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-----------------IPVQVLDTA 280 (462)
T ss_dssp HHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-----------------EEEEECC--
T ss_pred hhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-----------------EEEEEEECC
Confidence 334445789999999999999999999987788899999999998887777765 669999999
Q ss_pred CCCCCCCcccchh-hhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHH-HHHHhhcc
Q 014450 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM-EKLKKGKA 207 (424)
Q Consensus 130 G~~~~~~~~~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~-~~i~k~~~ 207 (424)
|+.+.....+.++ ..++..++.+|++++|+|+++....... .....+.+.+++ +++||.|...... ..+.....
T Consensus 281 G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~-~i~~~l~~~pii---vV~NK~Dl~~~~~~~~~~~~~~ 356 (462)
T 3geh_A 281 GIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQ-EIYEQVKHRPLI---LVMNKIDLVEKQLITSLEYPEN 356 (462)
T ss_dssp ------------------CCCCSCSEEEEEEETTTCSCHHHH-HHHHHHTTSCEE---EEEECTTSSCGGGSTTCCCCTT
T ss_pred ccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHH-HHHHhccCCcEE---EEEECCCCCcchhhHHHHHhcc
Confidence 9966544333332 4566778999999999999875321000 000000111122 3355555432211 00011101
Q ss_pred C---CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 208 K---DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 208 ~---~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
. ..+||+++.+++++++.+.+.+...
T Consensus 357 ~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 357 ITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 1 1269999999999999999998654
No 24
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.59 E-value=7.2e-15 Score=140.90 Aligned_cols=157 Identities=22% Similarity=0.294 Sum_probs=105.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|+|. ...++++|++|.+...+.+...+ ..+.+|||||+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 64 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYRE-----------------KEFLVVDLPGIYSLT 64 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT-CEEEEECTTSSCEEEEEEEEETT-----------------EEEEEEECCCCSCCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeEEEeeEEEEEECC-----------------ceEEEEeCCCccccc
Confidence 379999999999999999999954 55899999999999988888765 569999999997654
Q ss_pred Cc--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
.. .+.+...++. ...+|++++|+|+++.................+++ +++|++|..+++ ...+.+....
T Consensus 65 ~~~~~~~~~~~~~~-~~~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~i---lv~NK~Dl~~~~~~~~~~~~l~~~lg~ 140 (271)
T 3k53_A 65 AHSIDELIARNFIL-DGNADVIVDIVDSTCLMRNLFLTLELFEMEVKNII---LVLNKFDLLKKKGAKIDIKKMRKELGV 140 (271)
T ss_dssp SSCHHHHHHHHHHH-TTCCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEE---EEEECHHHHHHHTCCCCHHHHHHHHSS
T ss_pred cCCHHHHHHHHhhh-ccCCcEEEEEecCCcchhhHHHHHHHHhcCCCCEE---EEEEChhcCcccccHHHHHHHHHHcCC
Confidence 32 1112222221 36899999999997643211100000001112233 557888876542 1222222221
Q ss_pred --CCcchhhHHHHHHHHHHHHHHHhCCC
Q 014450 209 --DSQSKLKEDAEKAALEKIQQALMDGK 234 (424)
Q Consensus 209 --~~~Sak~~~~~~~ll~~i~~~L~~~~ 234 (424)
.++||+++.++.++++.+.+.+....
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVIPTNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEEECBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHhccc
Confidence 23799999999999999999887643
No 25
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.59 E-value=9.9e-15 Score=138.31 Aligned_cols=92 Identities=16% Similarity=0.048 Sum_probs=65.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCC-CccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+|||.||||||||+|+|+|.....++..+ ++|+.+..+.+...+ .++.||||||+.+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-----------------CHVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-----------------EEEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-----------------cEEEEEECCCCCC
Confidence 4589999999999999999999976666554433 488888888887765 6799999999975
Q ss_pred CCCcc-cchhhhhhhh----hhccceEEEEeecCC
Q 014450 134 GASQG-EGLGNKFLSH----IREVDSILQVVRCFE 163 (424)
Q Consensus 134 ~~~~~-~~~~~~~l~~----i~~aD~il~Vvda~~ 163 (424)
..... +.+...+... .+.+|++|+|+|++.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC
Confidence 54322 3333333333 389999999999874
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.57 E-value=2.1e-15 Score=154.56 Aligned_cols=154 Identities=20% Similarity=0.200 Sum_probs=87.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+|||.||||||||+|+|+|...+.+++.|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-----------------SCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-----------------ceEEEEECCCCCCcch
Confidence 68999999999999999999988888899999999999988887765 5699999999964322
Q ss_pred c-ccchhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhc--cC---
Q 014450 137 Q-GEGLGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK--AK--- 208 (424)
Q Consensus 137 ~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~--~~--- 208 (424)
. .+.+...+...+++||++++|+|+++...... +..... ..+.+++ ++.|++|..+.... +.... ..
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~-~~~~pvi---lv~NK~D~~~~~~~-~~~~~~lg~~~~ 141 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVV---LAVNKLDNTEMRAN-IYDFYSLGFGEP 141 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHT-TCCSCEE---EEEECCCC-----C-CCSSGGGSSCCC
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-HcCCCEE---EEEECccCccchhh-HHHHHHcCCCCe
Confidence 1 23444566778899999999999976432100 000000 0112222 44566654432110 00111 11
Q ss_pred CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 209 DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 209 ~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+||+++.++.++++.+.+.+++
T Consensus 142 ~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 142 YPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp EECBTTTTBTHHHHHHHHHHTGGG
T ss_pred EEEeCcCCCChHHHHHHHHHhcCc
Confidence 126999999999999999988874
No 27
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.57 E-value=3.2e-15 Score=142.07 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=72.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCC-ccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~-tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+|+|.||||||||+|+|++...+..+..|. +|++...+.+...+ .++.||||||+.+
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-----------------REIVIIDTPDMFS 83 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-----------------EEEEEEECCGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-----------------CEEEEEECcCCCC
Confidence 45899999999999999999999777677666676 88888888777665 6799999999987
Q ss_pred CCCcccch----hhhhhhhhhccceEEEEeecCC
Q 014450 134 GASQGEGL----GNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 134 ~~~~~~~~----~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.....+.+ ...+...++.+|++++|+|++.
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 65432222 3344556789999999999975
No 28
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.56 E-value=8.3e-15 Score=135.11 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=97.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+++|.+|||||||+|+|++.. .+.+++.+++|.+.....+...+ ...+.||||||+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGY 91 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCc
Confidence 46899999999999999999999766 57889999999887766554221 25699999999865
Q ss_pred CCCcc------cchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHH-----HHH
Q 014450 134 GASQG------EGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEK-----RME 200 (424)
Q Consensus 134 ~~~~~------~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~ 200 (424)
..... ..+...++.....+|++++|+|+++..... .+...... ...+++ +++++.|.... ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~~p~i---~v~nK~Dl~~~~~~~~~~~ 167 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TGKPIH---SLLTKCDKLTRQESINALR 167 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GCCCEE---EEEECGGGSCHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cCCCEE---EEEeccccCChhhHHHHHH
Confidence 42211 123345555566699999999997642200 00000000 011111 23444433211 111
Q ss_pred ----HHHhh-----cc---CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 ----KLKKG-----KA---KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ----~i~k~-----~~---~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+... .. ...+||+++.++.++++.|.+.++.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 168 ATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 12221 01 1126999999999999999999864
No 29
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.54 E-value=4.1e-14 Score=122.92 Aligned_cols=154 Identities=25% Similarity=0.269 Sum_probs=90.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|++.....+++.+++|.+.....+...+ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccc
Confidence 68999999999999999999977766678889999988888777765 5699999999865443
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHHH--HHHHHhh-c-cCCC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEKR--MEKLKKG-K-AKDS 210 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~~--~~~i~k~-~-~~~~ 210 (424)
....+...+...++.+|++++|+|+++..... .+...... .+.+++ ++.++.|..+.. ...+.+. . +...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR-KGKPVI---LVATKVDDPKHELYLGPLYGLGFGDPIP 140 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH-HTCCEE---EEEECCCSGGGGGGCGGGGGGSSCSCEE
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh-cCCCEE---EEEECcccccchHhHHHHHhCCCCCeEE
Confidence 22334455667789999999999997743210 00000000 011111 223433332210 0011111 0 1123
Q ss_pred cchhhHHHHHHHHHHHHHHHh
Q 014450 211 QSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 211 ~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+||+++.++.++++.+.+.+|
T Consensus 141 ~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 141 TSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CBTTTTBSHHHHHHHHHHHCC
T ss_pred EecccCCChHHHHHHHHHhCc
Confidence 799999999999999988764
No 30
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=1.7e-15 Score=156.09 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=88.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+|||.||||||||+|+|+|...+.+++.|++|++...+.+...+ ..+.+|||||+....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-----------------SCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-----------------ceEEEEECCCCCCcc
Confidence 479999999999999999999988888899999999999988887665 569999999986332
Q ss_pred Cc-ccchhhhhhhhhhccceEEEEeecCCCCce--eeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhcc--CC-
Q 014450 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKA--KD- 209 (424)
Q Consensus 136 ~~-~~~~~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~--~~- 209 (424)
.. .+.+...+...+++||++|+|+|+.+.... ..+..... -...+++ ++.|++|..+.... ...... .+
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~-~~~~pvi---lV~NK~D~~~~~~~-~~e~~~lg~~~ 160 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILY-RTKKPVV---LAVNKLDNTEMRAN-IYDFYSLGFGE 160 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHT-TCCSCEE---EEEECC----------CCSGGGSSSS
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHH-HcCCCEE---EEEECccchhhhhh-HHHHHHcCCCc
Confidence 21 334455667788999999999998653210 00000000 0122223 45677765543211 111111 11
Q ss_pred --CcchhhHHHHHHHHHHHHHHHh
Q 014450 210 --SQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 210 --~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+||+++.++.++++.+.+.++
T Consensus 161 ~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 161 PYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTGG
T ss_pred eEEeecccccchHHHHHHHHhhcc
Confidence 2689999999999998877765
No 31
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=1.4e-14 Score=129.68 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=101.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+ +....++.+|++|.++..+.+...+ ..+.+|||||.....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~-~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-TTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCccccCCCCeeccceEEEEEeCC-----------------cEEEEEECCCcCccc
Confidence 4799999999999999999999 5556788899999998888887765 679999999986543
Q ss_pred Cc--ccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH-----HHHHHhhccC
Q 014450 136 SQ--GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR-----MEKLKKGKAK 208 (424)
Q Consensus 136 ~~--~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~-----~~~i~k~~~~ 208 (424)
.. .+.+...++.. ..+|++++|+|+++............. .+.+++ ++.++.|....+ ...+.+....
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~~~~ 143 (188)
T 2wjg_A 69 ANSIDEIIARDYIIN-EKPDLVVNIVDATALERNLYLTLQLME-MGANLL---LALNKMDLAKSLGIEIDVDKLEKILGV 143 (188)
T ss_dssp SSSHHHHHHHHHHHH-HCCSEEEEEEEGGGHHHHHHHHHHHHT-TTCCEE---EEEECHHHHHHTTCCCCHHHHHHHHTS
T ss_pred cccHHHHHHHHHHhc-cCCCEEEEEecchhHHHHHHHHHHHHh-cCCCEE---EEEEhhhccccccchHHHHHHHHHhCC
Confidence 21 11222222221 459999999998753221100000000 112223 456777765431 1222221111
Q ss_pred --CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 209 --DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 209 --~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
..+||+++.++.++++.+.+.+.+.
T Consensus 144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 144 KVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 2379999999999999999988764
No 32
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.6e-13 Score=121.33 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=63.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++ ........|++|.+.....+...+.. ..+.+|||||...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 70 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD-NTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQER 70 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS-CC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc-CCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchh
Confidence 3458999999999999999999994 44445666777777777777665522 5699999999643
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.. ......++.+|++++|+|++
T Consensus 71 ~~-------~~~~~~~~~~d~~i~v~d~~ 92 (181)
T 3tw8_B 71 FR-------TITSTYYRGTHGVIVVYDVT 92 (181)
T ss_dssp CS-------SCCGGGGTTCSEEEEEEETT
T ss_pred hh-------hhHHHHhccCCEEEEEEECC
Confidence 22 23455678899999999984
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.51 E-value=2e-13 Score=119.50 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=57.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.. ......|.++.+.....+..++.. ..+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhh
Confidence 4799999999999999999999544 334445666666666666655422 569999999964322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......++.+|++++|+|++
T Consensus 67 -------~~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1g16_A 67 -------TITTAYYRGAMGIILVYDIT 86 (170)
T ss_dssp -------CCCHHHHTTEEEEEEEEETT
T ss_pred -------hhHHHHhccCCEEEEEEECC
Confidence 23455678899999999984
No 34
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=2.2e-13 Score=124.23 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=63.1
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.....++|+++|.||||||||+|+|++.. ......|.++.+.....+.+++.. ..+.||||||.
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~ 79 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQ 79 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTG
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCc
Confidence 33456899999999999999999999544 344555666666666666665422 56999999996
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
... .......++.+|++++|+|++
T Consensus 80 ~~~-------~~~~~~~~~~~d~ii~v~d~~ 103 (213)
T 3cph_A 80 ERF-------RTITTAYYRGAMGIILVYDVT 103 (213)
T ss_dssp GGG-------TCCCHHHHTTCSEEEEEEETT
T ss_pred HHH-------HHHHHHHhccCCEEEEEEECC
Confidence 332 223456678999999999984
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.51 E-value=4.2e-13 Score=119.59 Aligned_cols=83 Identities=18% Similarity=0.172 Sum_probs=59.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... ...++.|+.+.....+..++.. ..+.+|||||.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHH
Confidence 57999999999999999999996553 4455666666655555555421 558899999974332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. .....++.+|++++|+|++
T Consensus 67 ~-------~~~~~~~~~~~~i~v~d~~ 86 (189)
T 4dsu_A 67 A-------MRDQYMRTGEGFLCVFAIN 86 (189)
T ss_dssp T-------THHHHHHHCSEEEEEEETT
T ss_pred H-------HHHHHHhcCCEEEEEEECC
Confidence 2 3345577899999999984
No 36
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.50 E-value=3.9e-13 Score=120.86 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=64.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++ ........|.+|.+.....+..++.. ..+.||||||...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~- 77 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQER- 77 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH-SCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGG-
T ss_pred cceEEEEECcCCCCHHHHHHHHHc-CCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHh-
Confidence 358999999999999999999994 44455556777777777777665522 5699999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 78 ------~~~~~~~~~~~~d~~i~v~d~~ 99 (196)
T 3tkl_A 78 ------FRTITSSYYRGAHGIIVVYDVT 99 (196)
T ss_dssp ------GCTTHHHHHTTCSEEEEEEETT
T ss_pred ------hhhhHHHHHhhCCEEEEEEECc
Confidence 2234556678899999999984
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.50 E-value=3.1e-14 Score=145.87 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=93.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.||||||||+|+|++...+.++++|+||++.....+..++ ..+.||||||+.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKK 236 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-----------------EEEEETTHHHHTCB
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-----------------eEEEEEECCCcCcC
Confidence 4589999999999999999999987778899999999999888887765 56999999999654
Q ss_pred CCcc---cchh-hhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHH-------HHHH
Q 014450 135 ASQG---EGLG-NKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEK-------RMEK 201 (424)
Q Consensus 135 ~~~~---~~~~-~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~-------~~~~ 201 (424)
.... +.+. ...+..++.||++++|+|+++...... +...... ...+++ ++.|++|.++. ....
T Consensus 237 ~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~-~~~~ii---iv~NK~Dl~~~~~~~~~~~~~~ 312 (436)
T 2hjg_A 237 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVV---IVVNKWDAVDKDESTMKEFEEN 312 (436)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEE---EEEECGGGSCCCTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHH-cCCcEE---EEEECccCCCcchHHHHHHHHH
Confidence 4321 2121 234567889999999999987543100 0000000 001111 22333332211 1111
Q ss_pred HHhhc---cCC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 202 LKKGK---AKD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 202 i~k~~---~~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+.... ... .+||+++.++.++++.+.+.+.+
T Consensus 313 ~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 313 IRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 11111 111 26999999999999999988865
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.49 E-value=1.6e-14 Score=128.07 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=89.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.........|.++.+.....+..++. ...+.+|||||...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~ 72 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV---------------KVKLQMWDTAGQER 72 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE---------------EEEEEEEECCCC--
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcHH
Confidence 345899999999999999999999665544445566665555555555442 15799999999643
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHH------HHHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIE------KRMEKL 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~------~~~~~i 202 (424)
. .......++.+|++++|+|+++......+......+ .+.+++ ++.++.|... .....+
T Consensus 73 ~-------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~ 142 (180)
T 2g6b_A 73 F-------RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALM---LLGNKVDSAHERVVKREDGEKL 142 (180)
T ss_dssp -------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE---EEEECCSTTSCCCSCHHHHHHH
T ss_pred H-------HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEECcccCcccccCHHHHHHH
Confidence 2 224456678999999999998754321110000000 111112 2233333221 011111
Q ss_pred Hhhc--cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 203 KKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 203 ~k~~--~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.. ....+||+++.++.++++.+.+.+.+
T Consensus 143 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 143 AKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 11236999999999999999888754
No 39
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.49 E-value=4.1e-14 Score=124.17 Aligned_cols=150 Identities=19% Similarity=0.227 Sum_probs=91.2
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.+...++|+++|.+|||||||+|+|+++.... ..| |.......+.+.+ ..+.+|||||.
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~ 61 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVT--TIP--TIGFNVETVTYKN-----------------LKFQVWDLGGL 61 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCC--CCC--CSSEEEEEEEETT-----------------EEEEEEEECCC
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCC--cCC--cCccceEEEEECC-----------------EEEEEEECCCC
Confidence 34456899999999999999999999655432 222 3344444444443 67999999997
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH----HHH-
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK----RME- 200 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~----~~~- 200 (424)
.. +.......++.+|++++|+|+++...+......... ..+.+++ ++.++.|.... .+.
T Consensus 62 ~~-------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~ 131 (171)
T 1upt_A 62 TS-------IRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILV---VFANKQDMEQAMTSSEMAN 131 (171)
T ss_dssp GG-------GGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHH
T ss_pred hh-------hhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEE---EEEECCCCcCCCCHHHHHH
Confidence 32 223445667899999999999876543211110000 0122222 44555554321 111
Q ss_pred HHHh-hcc-----CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 KLKK-GKA-----KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ~i~k-~~~-----~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.. ... ...+||+++.++.++++.+.+.+++
T Consensus 132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 132 SLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1111 111 1126999999999999999888754
No 40
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.49 E-value=6.6e-13 Score=117.96 Aligned_cols=151 Identities=19% Similarity=0.128 Sum_probs=95.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++. ..+.++.|+.......+...+. ...+.+|||||.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQ---------------EYHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCE---------------EEEEEEEeCCCchhhh
Confidence 5799999999999999999999544 2444555555555555555442 1568999999985442
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHHHHHHHhhccCCCcchhh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~~~~i~k~~~~~~~Sak~ 215 (424)
. .....++.+|++++|+|+++.. .. +
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~----------------s~------------~------------------- 94 (181)
T 3t5g_A 69 I-------FPQTYSIDINGYILVYSVTSIK----------------SF------------E------------------- 94 (181)
T ss_dssp C-------CCGGGTTTCSEEEEEEETTCHH----------------HH------------H-------------------
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHH----------------HH------------H-------------------
Confidence 2 2334567899999999984211 00 0
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHHHhhhhccceEEeccccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014450 216 EDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 295 (424)
Q Consensus 216 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~l~~kpi~y~~nv~~~~~~~~~~~~~~~~i~~~~~~~~~~~v 295 (424)
.+...+..+.+.+ .....|+++++|+.|. .+. .....++..+++...+.+++
T Consensus 95 --~~~~~~~~~~~~~-----------------------~~~~~p~ilv~nK~Dl--~~~-~~~~~~~~~~~~~~~~~~~~ 146 (181)
T 3t5g_A 95 --VIKVIHGKLLDMV-----------------------GKVQIPIMLVGNKKDL--HME-RVISYEEGKALAESWNAAFL 146 (181)
T ss_dssp --HHHHHHHHHHHHC---------------------------CCEEEEEECTTC--TTT-CCSCHHHHHHHHHHTTCEEE
T ss_pred --HHHHHHHHHHHhc-----------------------CCCCCCEEEEEECccc--hhc-ceecHHHHHHHHHHhCCcEE
Confidence 0001111111111 1135789999999863 222 23446677778878889999
Q ss_pred EecHHhHHHH
Q 014450 296 TISAQVEAEL 305 (424)
Q Consensus 296 ~~sa~~e~~l 305 (424)
++||+....+
T Consensus 147 ~~Sa~~~~~v 156 (181)
T 3t5g_A 147 ESSAKENQTA 156 (181)
T ss_dssp ECCTTSHHHH
T ss_pred EEecCCCCCH
Confidence 9999876555
No 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=8.8e-13 Score=115.12 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=59.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... .....|..+.+.....+.+++. ...+.+|||||..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~--- 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDF-AENKEPTIGAAFLTQRVTINEH---------------TVKFEIWDTAGQE--- 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSG---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCCh---
Confidence 37899999999999999999995543 2333344444444445554432 1579999999963
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+.......++.+|++++|+|++
T Consensus 64 ----~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T 1ek0_A 64 ----RFASLAPXYYRNAQAALVVYDVT 86 (170)
T ss_dssp ----GGGGGHHHHHTTCSEEEEEEETT
T ss_pred ----hhhhhhhhhhccCcEEEEEEecC
Confidence 22334556678999999999984
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.49 E-value=5.7e-13 Score=117.53 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++.. ..+.+|||||...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~-- 75 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQER-- 75 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGG--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHH--
Confidence 3799999999999999999999443 334445666666666666665422 5699999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 76 -----~~~~~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 76 -----FRSLIPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp -----GGGGSHHHHHTCSEEEEEEETT
T ss_pred -----HHHHHHHHhcCCCEEEEEEECC
Confidence 2234456678999999999984
No 43
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.49 E-value=6.2e-13 Score=120.81 Aligned_cols=90 Identities=19% Similarity=0.103 Sum_probs=62.4
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
+.....++|+++|.||||||||+|+|++ ........|.+|.+.....+.+.+.. .++.+|||||
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g 81 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGG-LQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWE 81 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCC-EECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHh-ccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCC
Confidence 3444568999999999999999999984 33334556777877777777665522 5688999999
Q ss_pred CCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.... .. ......++.+|++++|+|++
T Consensus 82 ~~~~----~~--~~~~~~~~~~d~~ilv~d~~ 107 (195)
T 3cbq_A 82 QGDA----GG--WLRDHCLQTGDAFLIVFSVT 107 (195)
T ss_dssp CSGG----GH--HHHHHHHHHCSEEEEEEETT
T ss_pred Cccc----hh--hhHHHhhccCCEEEEEEECC
Confidence 7321 11 01223467899999999984
No 44
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.48 E-value=1.3e-12 Score=117.25 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=60.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcch---------hhccc-------------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH---------VLSGL------------- 112 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d---------~l~~~------------- 112 (424)
..++|+++|.+|||||||+|+|++... .....|.++.+.....+.+++.... .+...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTF-HENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 468999999999999999999996543 2333344444444444544431100 00000
Q ss_pred cccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 113 ~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..+.......+.||||||..... ......++.+|++++|+|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~ 127 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDIS 127 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETT
T ss_pred cccCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECC
Confidence 00001111579999999964322 24556678999999999984
No 45
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.48 E-value=4.3e-14 Score=131.49 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=93.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++. ...+++.+++|++...+.+...+ ..+.||||||+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT-CEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCc
Confidence 4689999999999999999999954 44578889999988887776654 67999999999654
Q ss_pred CCcccc-h-hhhhhhhhhccceEEEEeecCCCCceee-----ecccccc-CCchhhhhhhhhcccHHHHHH---------
Q 014450 135 ASQGEG-L-GNKFLSHIREVDSILQVVRCFEDNDIVH-----VNGKVDP-KSDVDVINLELVFSDLDQIEK--------- 197 (424)
Q Consensus 135 ~~~~~~-~-~~~~l~~i~~aD~il~Vvda~~~~~~~~-----~~~~~dp-~~d~~~i~~el~~~~~~~i~~--------- 197 (424)
...... + ........+.+|++++|+|+++...+.. ....... ..+.+++ ++.++.|..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~ 166 (228)
T 2qu8_A 90 AFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIV---IGFNKIDKCNMDSLSIDNKL 166 (228)
T ss_dssp CGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEE---EEEECGGGCC--CCCHHHHH
T ss_pred ccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEE---EEEeCcccCCchhhHHHHHH
Confidence 322111 1 1122233678899999999987643210 0000000 0122222 33444443221
Q ss_pred HHHHHHhh----ccCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 RMEKLKKG----KAKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 ~~~~i~k~----~~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
....+.+. .....+||+++.++.++++.+.+.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 167 LIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 11122111 111237999999999999999887743
No 46
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.48 E-value=1.4e-13 Score=141.00 Aligned_cols=157 Identities=24% Similarity=0.311 Sum_probs=93.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+|+|.||||||||+|+|+|...+.++++|+||+++..+.+.+.+ ..+.+|||||+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-----------------~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-----------------RKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-----------------EEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-----------------EEEEEEECCCCccc
Confidence 3589999999999999999999988888899999999999999988876 56899999998543
Q ss_pred CCcc----cch-hhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHHH-------HH
Q 014450 135 ASQG----EGL-GNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEKR-------ME 200 (424)
Q Consensus 135 ~~~~----~~~-~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~~-------~~ 200 (424)
.... +.+ ....+..++.+|++++|+|++....... +...... ....++ ++.|++|.+++. ..
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~~~i---lv~NK~Dl~~~~~~~~~~~~~ 317 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RGRASV---VVFNKWDLVVHREKRYDEFTK 317 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEE---EEEECGGGSTTGGGCHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCCCEE---EEEECccCCCchhhHHHHHHH
Confidence 3211 111 1234567889999999999976432100 0000000 001111 223333332210 01
Q ss_pred HHHh-hc--cCC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 KLKK-GK--AKD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ~i~k-~~--~~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.+ .. ... .+||++|.++.++++.+.+.+++
T Consensus 318 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 318 LFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp HHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 1111 11 111 26999999999999999988865
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.48 E-value=9e-13 Score=114.65 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=57.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... ...++.|+.+.....+...+. ...+.+|||||..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~-- 64 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGE---------------EVQIDILDTAGQED-- 64 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCE---------------EEEEEEEECCCcch--
Confidence 47999999999999999999996553 334445555544444444432 15699999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 65 -----~~~~~~~~~~~~d~~i~v~d~~ 86 (168)
T 1u8z_A 65 -----YAAIRDNYFRSGEGFLCVFSIT 86 (168)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETT
T ss_pred -----hHHHHHHHhhcCCEEEEEEECC
Confidence 2234455678899999999984
No 48
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.48 E-value=5.5e-14 Score=126.13 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=88.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++...... .|.......+.+.+ ..+.+|||||..+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS----PTIGSNVEEIVINN-----------------TRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE----CCSCSSCEEEEETT-----------------EEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc----CCCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 4589999999999999999999955443222 23333334444433 67999999998433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH----HH-HHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK----RM-EKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~----~~-~~i~ 203 (424)
. ......++.+|++++|+|+++...+..+...... ..+.+++ ++.++.|.... .+ ..+.
T Consensus 74 ~-------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~~~ 143 (187)
T 1zj6_A 74 R-------SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL---IFANKQDVKECMTVAEISQFLK 143 (187)
T ss_dssp C-------GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEE---EEEECTTSTTCCCHHHHHHHHT
T ss_pred H-------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEE---EEEECCCCcCCCCHHHHHHHhC
Confidence 2 2344567889999999999887543221111000 1122233 44555554321 11 1111
Q ss_pred hh-cc-C----CCcchhhHHHHHHHHHHHHHHHhCCCC
Q 014450 204 KG-KA-K----DSQSKLKEDAEKAALEKIQQALMDGKP 235 (424)
Q Consensus 204 k~-~~-~----~~~Sak~~~~~~~ll~~i~~~L~~~~~ 235 (424)
.. .. . ..+||+++.+++++++.+.+.++..++
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 144 LTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp GGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred hhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 11 11 1 126999999999999999999876544
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.48 E-value=1.2e-12 Score=115.85 Aligned_cols=84 Identities=18% Similarity=0.073 Sum_probs=58.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+.+. ...+.||||||..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~--- 72 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFV-EFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQE--- 72 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCT-TTSCCCSCCSEEEEEEEETTE---------------EEEEEEEECCCSG---
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CcCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCCh---
Confidence 479999999999999999999955433 222333333333444444432 2579999999963
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+.......++.+|++++|+|++
T Consensus 73 ----~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
T 2efe_B 73 ----RYHSLAPMYYRGAAAAIIVFDVT 95 (181)
T ss_dssp ----GGGGGTHHHHTTCSEEEEEEETT
T ss_pred ----hhhhhhHHHhccCCEEEEEEECC
Confidence 22334456678899999999984
No 50
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.47 E-value=8.7e-14 Score=143.30 Aligned_cols=158 Identities=20% Similarity=0.200 Sum_probs=98.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.||+|||||+|+|++...+.++++|+||++.....+..++ ..+.||||||+.+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~l~DT~G~~~ 255 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRK 255 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-----------------EEEEETTGGGTTT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-----------------ceEEEEECCCCCc
Confidence 34689999999999999999999987788999999999999888887766 5699999999865
Q ss_pred CCCc---ccch-hhhhhhhhhccceEEEEeecCCCCce--eeeccccccCCchhhhhhhhhcccHHHHH-------HHHH
Q 014450 134 GASQ---GEGL-GNKFLSHIREVDSILQVVRCFEDNDI--VHVNGKVDPKSDVDVINLELVFSDLDQIE-------KRME 200 (424)
Q Consensus 134 ~~~~---~~~~-~~~~l~~i~~aD~il~Vvda~~~~~~--~~~~~~~dp~~d~~~i~~el~~~~~~~i~-------~~~~ 200 (424)
.... .+.+ ....+..++.||++++|+|+++.... ..+...... ...+++ ++.|++|..+ ....
T Consensus 256 ~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~~~i---lv~NK~Dl~~~~~~~~~~~~~ 331 (456)
T 4dcu_A 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVV---IVVNKWDAVDKDESTMKEFEE 331 (456)
T ss_dssp BTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEE---EEEECGGGSCCCSSHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEE---EEEEChhcCCCchHHHHHHHH
Confidence 4322 1222 23455678999999999999874320 000000000 011111 2234433321 1112
Q ss_pred HHHhhcc---CC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 201 KLKKGKA---KD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 201 ~i~k~~~---~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+..... .. .+||+++.++.++++.+.+.+.+
T Consensus 332 ~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 332 NIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 2222211 11 26999999999999999988865
No 51
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.47 E-value=2e-14 Score=127.25 Aligned_cols=149 Identities=19% Similarity=0.159 Sum_probs=94.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|+ .........|++|.+.....+.+++ ..+.+|||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIR-HSKVTEQEAGGITQHIGAYQVTVND-----------------KKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-TTCSSCSSCCSSSTTCCCCEEEETT-----------------EEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh-CCccccCCCCceeEeeeEEEEEeCC-----------------ceEEEEECCCCHH
Confidence 446899999999999999999999 4455566677777777666666654 5689999999754
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCc---eeeeccccccCCchhhhhhhhhcccHHHHH----HHHHHHHhh-
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIE----KRMEKLKKG- 205 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~----~~~~~i~k~- 205 (424)
... .....++.+|++++|+|+++... ...+..... .+++++ ++.++.|... .....+...
T Consensus 68 ~~~-------~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~--~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~~ 135 (178)
T 2lkc_A 68 FTT-------MRARGAQVTDIVILVVAADDGVMPQTVEAINHAKA--ANVPII---VAINKMDKPEANPDRVMQELMEYN 135 (178)
T ss_dssp SSC-------SCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG--GSCCEE---EEEETTTSSCSCHHHHHHHHTTTT
T ss_pred HHH-------HHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh--CCCCEE---EEEECccCCcCCHHHHHHHHHhcC
Confidence 332 23355788999999999876321 100000000 111222 3344444331 111112111
Q ss_pred --c-------cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 206 --K-------AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 206 --~-------~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
. ....+||+++.++.++++.+.+.+..
T Consensus 136 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 136 LVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp CCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred cChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 1 11126999999999999999887754
No 52
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=126.30 Aligned_cols=92 Identities=17% Similarity=0.115 Sum_probs=63.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCC--CccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p--~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...++|+|+|.+|||||||+|+|+|... ..+..| ++|.++..+.+.+.+ ..+.||||||+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~ 88 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKE-----------------TELVVVDTPGI 88 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETT-----------------EEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCC-----------------ceEEEEECCCc
Confidence 3458999999999999999999995554 455555 788888888877765 67999999999
Q ss_pred CCCCCcccchh----hhhhhhhhccceEEEEeecCC
Q 014450 132 VKGASQGEGLG----NKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 132 ~~~~~~~~~~~----~~~l~~i~~aD~il~Vvda~~ 163 (424)
......+..+. ..+....+.+|++|+|+|++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 89 FDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGR 124 (239)
T ss_dssp C-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTC
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC
Confidence 86654333333 333444567899999999864
No 53
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.47 E-value=1.2e-12 Score=119.12 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=62.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.||||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 70 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERF 70 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHH
Confidence 35799999999999999999999544 334445666666666666655422 57999999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.. .....++.+|++++|+|++
T Consensus 71 ~~-------~~~~~~~~~d~vilv~d~~ 91 (206)
T 2bcg_Y 71 RT-------ITSSYYRGSHGIIIVYDVT 91 (206)
T ss_dssp TC-------CCGGGGTTCSEEEEEEETT
T ss_pred HH-------HHHHhccCCCEEEEEEECc
Confidence 22 3455678899999999984
No 54
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.47 E-value=4.4e-13 Score=120.07 Aligned_cols=154 Identities=20% Similarity=0.236 Sum_probs=93.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++......++.+++|.+....... .++.+|||||+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~~i~Dt~G~~~ 80 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN--------------------SKYYFVDLPGYGY 80 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET--------------------TTEEEEECCCBSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC--------------------CcEEEEECCCCcc
Confidence 34579999999999999999999977777788888888776544331 3488999999754
Q ss_pred CCCcc------cchhhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHH-----HHHHH
Q 014450 134 GASQG------EGLGNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQI-----EKRME 200 (424)
Q Consensus 134 ~~~~~------~~~~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i-----~~~~~ 200 (424)
..... ..+...++.....+|++++|+|++...... .+...... .+.+++ ++.++.|.. +....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~i---~v~nK~Dl~~~~~~~~~~~ 156 (195)
T 3pqc_A 81 AKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-LNIPFT---IVLTKMDKVKMSERAKKLE 156 (195)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEE---EEEECGGGSCGGGHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-cCCCEE---EEEEChhcCChHHHHHHHH
Confidence 32211 112233444555669999999987643210 00000000 011122 234444432 11122
Q ss_pred HHHhhccC------CCcchhhHHHHHHHHHHHHHHHh
Q 014450 201 KLKKGKAK------DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 201 ~i~k~~~~------~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+...... ..+||+++.++.++++.+.+.++
T Consensus 157 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 157 EHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 22222111 12699999999999999998875
No 55
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.47 E-value=2.4e-14 Score=125.52 Aligned_cols=150 Identities=13% Similarity=0.110 Sum_probs=87.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+.+. ...+.+|||||..+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGK---------------RVNLAIWDTAGQERFH 69 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSC---------------EEEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCE---------------EEEEEEEECCCcHhhh
Confidence 5799999999999999999999544 33334455554544455555442 2568999999964322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
......++.+|++++|+|+++...+..+......+ .+.+++ ++.++.|..+. ....+.+
T Consensus 70 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1z08_A 70 -------ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLC---IVGNKIDLEKERHVSIQEAESYAE 139 (170)
T ss_dssp ----------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEE---EEEECGGGGGGCCSCHHHHHHHHH
T ss_pred -------hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEE---EEEECcccccccccCHHHHHHHHH
Confidence 23344578899999999998754321111100000 011111 33444444321 1111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.+++++++.+.+.+.
T Consensus 140 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 111 123699999999999999988775
No 56
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.47 E-value=4.2e-15 Score=151.49 Aligned_cols=160 Identities=17% Similarity=0.138 Sum_probs=96.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|+|||||+|+|++...+.+++++++|.++....+.+.+. ..+.||||||+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d 95 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDD 95 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCc
Confidence 345899999999999999999999777778899999999999888877651 3699999999987
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH----HHHHHhhc--c
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR----MEKLKKGK--A 207 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~----~~~i~k~~--~ 207 (424)
+...+......+...++.+|++++|+|++.......+...... .+++++ +++|+.|..... ...+.+.. +
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~~~~~~l~~l~~-~~~piI---vV~NK~Dl~~~~~~~~~~~l~~~~g~~ 171 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDSAPTPYEDDVVNLFKE-MEIPFV---VVVNKIDVLGEKAEELKGLYESRYEAK 171 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSSSCCHHHHHHHHHHHH-TTCCEE---EECCCCTTTTCCCTHHHHHSSCCTTCC
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeCCChHHHHHHHHHHHh-cCCCEE---EEEeCcCCCCccHHHHHHHHHHHcCCC
Confidence 6655555556678888999999999998322211000000000 011112 234444432211 11111111 1
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 208 KDSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 208 ~~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
...+||+++.+++++++.+.+.+++.
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 12379999999999999999999654
No 57
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.47 E-value=1.1e-12 Score=118.73 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=61.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++... ...++.|+.+.....+..++.. ..+.||||||...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~- 74 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQED- 74 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTC-
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhh-
Confidence 358999999999999999999996552 3455666665555555554421 4699999999733
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 75 ------~~~~~~~~~~~~~~~i~v~d~~ 96 (206)
T 2bov_A 75 ------YAAIRDNYFRSGEGFLCVFSIT 96 (206)
T ss_dssp ------CHHHHHHHHHHCSEEEEEEETT
T ss_pred ------hHHHHHHHHhhCCEEEEEEECC
Confidence 2234455678899999999984
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.46 E-value=1.5e-12 Score=115.68 Aligned_cols=83 Identities=17% Similarity=0.143 Sum_probs=60.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... ...++.|+.+.....+...+.. ..+.||||||...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-- 78 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQED-- 78 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCcc--
Confidence 48999999999999999999996552 3445556555554445444321 4699999999643
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 79 -----~~~~~~~~~~~~d~~i~v~d~~ 100 (187)
T 2a9k_A 79 -----YAAIRDNYFRSGEGFLCVFSIT 100 (187)
T ss_dssp -----CHHHHHHHHHHCSEEEEEEETT
T ss_pred -----cHHHHHHHhccCCEEEEEEECc
Confidence 2234455678899999999984
No 59
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.46 E-value=1.2e-12 Score=118.73 Aligned_cols=85 Identities=21% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++... .....|..+.+.....+.+.+. ...+.||||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKF-SNQYKATIGADFLTKEVMVDDR---------------LVTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCC-CSSCCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCE---------------EEEEEEEeCCCcHHH
Confidence 458999999999999999999995543 3334455555666666655542 156999999996432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. ......++.+|++++|+|++
T Consensus 71 ~-------~~~~~~~~~~d~~i~v~d~~ 91 (207)
T 1vg8_A 71 Q-------SLGVAFYRGADCCVLVFDVT 91 (207)
T ss_dssp S-------CSCCGGGTTCSEEEEEEETT
T ss_pred H-------HhHHHHHhCCcEEEEEEECC
Confidence 2 23345678899999999985
No 60
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.46 E-value=3.8e-13 Score=120.94 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=82.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+++|.+|||||||+|+|++.. ...+++.+++|.+.....+ + .++.+|||||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T------------------TTEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C------------------CcEEEEECCCCCc
Confidence 46899999999999999999999665 4667788888877654432 1 3499999999854
Q ss_pred CCCc---ccch---hhhhhhhhhccceEEEEeecCCCCceeee--ccccccCCchhhhhhhhhcccHHHHH-----HHHH
Q 014450 134 GASQ---GEGL---GNKFLSHIREVDSILQVVRCFEDNDIVHV--NGKVDPKSDVDVINLELVFSDLDQIE-----KRME 200 (424)
Q Consensus 134 ~~~~---~~~~---~~~~l~~i~~aD~il~Vvda~~~~~~~~~--~~~~dp~~d~~~i~~el~~~~~~~i~-----~~~~ 200 (424)
.... .+.+ ...++.....+|++++|+|+++....... ...... ...+++ ++.++.|... ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~p~i---~v~nK~Dl~~~~~~~~~~~ 157 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YGIPVI---VIATKADKIPKGKWDKHAK 157 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEE---EEEECGGGSCGGGHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cCCCEE---EEEECcccCChHHHHHHHH
Confidence 4321 1112 22333333445999999999765331110 000000 011111 2344444322 1122
Q ss_pred HHHh-hcc--C---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 201 KLKK-GKA--K---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 201 ~i~k-~~~--~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+.+ ... . ..+||+++.++.++++.+.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 158 VVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 2222 111 1 12699999999999999988774
No 61
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.46 E-value=1.1e-12 Score=116.79 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=62.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++.. ..+.+|||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~-- 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQE-- 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSG--
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcH--
Confidence 35899999999999999999999544 333444555655555555555421 569999999962
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+.......++.+|++++|+|++
T Consensus 71 -----~~~~~~~~~~~~~d~~i~v~d~~ 93 (186)
T 2bme_A 71 -----RFRSVTRSYYRGAAGALLVYDIT 93 (186)
T ss_dssp -----GGHHHHHTTSTTCSEEEEEEETT
T ss_pred -----HHHHHHHHHHhcCCEEEEEEECc
Confidence 33345566788999999999984
No 62
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.45 E-value=1.1e-12 Score=114.95 Aligned_cols=84 Identities=18% Similarity=0.063 Sum_probs=51.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.||||||||+|+|++.. ......+.+|.+.....+.+++.. .++.+|||||......
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ-GDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEE---------------EEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-CcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccch
Confidence 689999999999999999999443 333334455666666666665422 5789999999843321
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......++.+|++++|+|++
T Consensus 67 ------~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 67 ------WLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp ---------CHHHHHCSEEEEEEETT
T ss_pred ------hhhhhhhccCCEEEEEEECC
Confidence 01122357799999999984
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.45 E-value=1.7e-12 Score=112.74 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|+++... ..+..++.+.....+.+++. ...+.+|||||....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~- 64 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGTEQF- 64 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTCC-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCE---------------EEEEEEEECCCchhh-
Confidence 379999999999999999999965432 23333443333444444431 256899999996322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.......++.+|++++|+|++
T Consensus 65 ------~~~~~~~~~~~~~~i~v~d~~ 85 (167)
T 1kao_A 65 ------ASMRDLYIKNGQGFILVYSLV 85 (167)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHHHhccCCEEEEEEeCC
Confidence 223445578899999999984
No 64
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.45 E-value=1.8e-12 Score=117.49 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=57.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... .....|..+.+.....+...+. ...+.||||||..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~--- 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSF-TPAFVSTVGIDFKVKTIYRNDK---------------RIKLQIWDTAGLE--- 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCC-CSCCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSG---
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEEECCe---------------EEEEEEEECCCch---
Confidence 47999999999999999999995443 2222233333333333333331 2579999999973
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.+.......++.+|++++|+|++
T Consensus 69 ----~~~~~~~~~~~~~d~ii~v~d~~ 91 (203)
T 1zbd_A 69 ----RYRTITTAYYRGAMGFILMYDIT 91 (203)
T ss_dssp ----GGHHHHHTTGGGCSEEEEEEETT
T ss_pred ----hhcchHHHhhcCCCEEEEEEECc
Confidence 23345566788999999999984
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.45 E-value=4.5e-14 Score=127.62 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=89.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~- 86 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDT-FCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQE- 86 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSG-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCC-CCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcH-
Confidence 345899999999999999999999443 333344555555555555554421 569999999962
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.+.......++.+|++++|+|+++......+..+...+ .+.+++ ++.++.|..+. ....+
T Consensus 87 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pii---lV~NK~Dl~~~~~v~~~~~~~~ 157 (192)
T 2il1_A 87 ------RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELL---LVGNKLDCETDREITRQQGEKF 157 (192)
T ss_dssp ------GGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE---EEEECGGGGGGCCSCHHHHHHH
T ss_pred ------HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE---EEEECcccccccccCHHHHHHH
Confidence 23344566778999999999998754322111000000 112222 34555554321 11122
Q ss_pred HhhccC---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 203 KKGKAK---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+.... ..+||+++.++.++++.+.+.+.
T Consensus 158 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 158 AQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 221111 12699999999999999887663
No 66
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.45 E-value=2.3e-12 Score=112.50 Aligned_cols=82 Identities=21% Similarity=0.094 Sum_probs=45.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|++......++.+++|... .+.+.+. ...+.+|||||.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGE---------------EASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTE---------------EEEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCE---------------EEEEEEEECCCCccch
Confidence 479999999999999999999977766677777777542 2233331 2568999999975432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. .....++.+|++++|+|++
T Consensus 64 ~-------~~~~~~~~~~~~i~v~d~~ 83 (166)
T 3q72_A 64 W-------LPGHCMAMGDAYVIVYSVT 83 (166)
T ss_dssp ----------------CCEEEEEEETT
T ss_pred h-------hhhhhhhhCCEEEEEEECC
Confidence 2 3334568899999999984
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.45 E-value=1.2e-13 Score=122.94 Aligned_cols=152 Identities=17% Similarity=0.139 Sum_probs=91.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++.. ...+..|+.+.....+.+.+. ...+.+|||||.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTE---------------EEEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCE---------------EEEEEEEECCCCHhHH
Confidence 47999999999999999999995442 233344444433333444331 2568899999984322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeec-cccccC----CchhhhhhhhhcccHHHHHHH------------
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDPK----SDVDVINLELVFSDLDQIEKR------------ 198 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp~----~d~~~i~~el~~~~~~~i~~~------------ 198 (424)
......++.+|++++|+|+++...+..+. .....+ .+.+++ ++.++.|.....
T Consensus 68 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 137 (186)
T 1mh1_A 68 -------RLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII---LVGTKLDLRDDKDTIEKLKEKKLT 137 (186)
T ss_dssp -------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEE---EEEECHHHHTCHHHHHHHHHTTCC
T ss_pred -------HHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEE---EEeEcccccccchhhhhhcccccc
Confidence 23344678899999999998754322111 000000 122333 456777765321
Q ss_pred ------HHHHHhhcc---CCCcchhhHHHHHHHHHHHHHHHhCCC
Q 014450 199 ------MEKLKKGKA---KDSQSKLKEDAEKAALEKIQQALMDGK 234 (424)
Q Consensus 199 ------~~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~~~~ 234 (424)
...+.+... ...+||+++.+++++++.+.+.+.+.+
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 138 PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp CCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred cCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 011111111 112699999999999999998886543
No 68
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.45 E-value=2.4e-12 Score=112.20 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++... ..++.|+.......+.+.+. ...+.+|||||.....
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~~ 65 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTEQFT 65 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSCSST
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 379999999999999999999964332 23333333333333444332 2569999999975433
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. .....++.+|++++|+|++
T Consensus 66 ~-------~~~~~~~~~d~~i~v~d~~ 85 (167)
T 1c1y_A 66 A-------MRDLYMKNGQGFALVYSIT 85 (167)
T ss_dssp T-------HHHHHHHHCSEEEEEEETT
T ss_pred H-------HHHHHhccCCEEEEEEECC
Confidence 2 3345567899999999984
No 69
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.45 E-value=2.6e-12 Score=125.45 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=69.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+++++....+++.+++|++...+.+.+.+ ..++.+|||||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG----------------NMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT----------------TEEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC----------------ceEEEEEECCCcHHHh
Confidence 479999999999999999999977677788899999999888877633 2679999999974220
Q ss_pred Ccccch-hhhhhhhhhccceEEEEeecCC
Q 014450 136 SQGEGL-GNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 136 ~~~~~~-~~~~l~~i~~aD~il~Vvda~~ 163 (424)
+.+ .......++.+|++++|+|+++
T Consensus 67 ---~~~~~~~~~~~~~~ad~vi~V~D~t~ 92 (307)
T 3r7w_A 67 ---ENYFTKQKDHIFQMVQVLIHVFDVES 92 (307)
T ss_dssp ---HHHHTTTHHHHHTTCSEEEEEEETTC
T ss_pred ---hhhhhhHHHHHhccCCEEEEEEECCC
Confidence 001 1234455688999999999854
No 70
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.45 E-value=3.3e-13 Score=120.15 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=43.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+ .........|.++.+.....+.+++.. ..+.||||||....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~-~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 70 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERF 70 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC------
T ss_pred CceEEEEECCCCCCHHHHHHHHH-hCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhh
Confidence 35899999999999999999999 444444444555555555555554421 56999999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. ......++.+|++++|+|++
T Consensus 71 ~-------~~~~~~~~~~d~~i~v~d~~ 91 (183)
T 2fu5_C 71 R-------TITTAYYRGAMGIMLVYDIT 91 (183)
T ss_dssp ----------CCTTTTTCSEEEEEEETT
T ss_pred h-------hhHHHHHhcCCEEEEEEECc
Confidence 2 23345678899999999984
No 71
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.45 E-value=1.6e-12 Score=114.58 Aligned_cols=85 Identities=22% Similarity=0.162 Sum_probs=57.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++. ...+.+|||||...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~- 76 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQ---------------KIKLQIWDTAGQER- 76 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTE---------------EEEEEEEECTTGGG-
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCe---------------EEEEEEEECCCChH-
Confidence 3589999999999999999999965432 112222232333333444331 25699999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.......++.+|++++|+|++
T Consensus 77 ------~~~~~~~~~~~~d~~i~v~d~~ 98 (179)
T 1z0f_A 77 ------FRAVTRSYYRGAAGALMVYDIT 98 (179)
T ss_dssp ------TCHHHHHHHHTCSEEEEEEETT
T ss_pred ------hhhhHHHHhccCCEEEEEEeCc
Confidence 2234566788999999999984
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.45 E-value=2.9e-14 Score=124.57 Aligned_cols=151 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ...+.+|||||....
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 67 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDE---------------DVRLMLWDTAGQEEF 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCE---------------EEEEEEEcCCCcHhH
Confidence 35799999999999999999999543 33333444445555555555432 257999999996433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC----CchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK----SDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~----~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
. ......++.+|++++|+|+++...+..+......+ .+.+++ ++.++.|..+. ....+.+
T Consensus 68 ~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 137 (168)
T 1z2a_A 68 D-------AITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTA---LVQNKIDLLDDSCIKNEEAEGLAK 137 (168)
T ss_dssp T-------CCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEE---EEEECGGGGGGCSSCHHHHHHHHH
T ss_pred H-------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEE---EEEECcccCcccccCHHHHHHHHH
Confidence 2 23455678899999999998754321111000000 111122 23444443321 1111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. +...+||+++.++.++++.+.+.+.
T Consensus 138 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 138 RLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence 11 1123699999999999998887663
No 73
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.45 E-value=7.8e-14 Score=123.23 Aligned_cols=151 Identities=16% Similarity=0.127 Sum_probs=88.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++. ...+.+|||||..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~--- 67 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGH---------------FVTMQIWDTAGQE--- 67 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTE---------------EEEEEEEECCCCG---
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCE---------------EEEEEEEeCCCch---
Confidence 5799999999999999999999543 33344455555555555555442 1569999999962
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc---------CCchhhhhhhhhcccHHHHH-----HHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP---------KSDVDVINLELVFSDLDQIE-----KRMEK 201 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp---------~~d~~~i~~el~~~~~~~i~-----~~~~~ 201 (424)
.+.......++.+|++++|+|+++......+...... ....+++ ++.++.|..+ .....
T Consensus 68 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i---~v~nK~Dl~~~~~~~~~~~~ 140 (177)
T 1wms_A 68 ----RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV---ILGNKIDISERQVSTEEAQA 140 (177)
T ss_dssp ----GGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEE---EEEECTTCSSCSSCHHHHHH
T ss_pred ----hhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEE---EEEECCcccccccCHHHHHH
Confidence 2333455667899999999999775432111000000 0111222 3344444221 11111
Q ss_pred HHh-hc--cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 202 LKK-GK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 202 i~k-~~--~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+.+ .. ....+||+++.++.++++.+.+.+.+
T Consensus 141 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 141 WCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 111 11 11126999999999999999887753
No 74
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=9.1e-14 Score=127.24 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=91.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++ .......|..+.+.....+.+++. ..++.||||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~--- 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEINGE---------------KVKLQIWDTAGQ--- 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS-SCCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCS---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCc---
Confidence 3589999999999999999999954 333444455555555555655542 157999999996
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
+.+.......++.+|++++|+|+++...+..+..+... ....+++ ++.++.|..+. ....+.
T Consensus 86 ----~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~pii---lv~NK~Dl~~~~~v~~~~~~~~~ 158 (201)
T 2ew1_A 86 ----ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV---LVGNKIDLAERREVSQQRAEEFS 158 (201)
T ss_dssp ----GGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE---EEEECGGGGGGCSSCHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE---EEEECCCCccccccCHHHHHHHH
Confidence 23334456678899999999999875432111110000 0111122 33444443311 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... ...+||+++.++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 159 EAQDMYYLETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111 123699999999999998887764
No 75
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.44 E-value=4.7e-14 Score=126.19 Aligned_cols=148 Identities=12% Similarity=0.179 Sum_probs=90.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++. ..... .|.......+.+++ ..+.+|||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~--~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~-- 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS--PTLGFNIKTLEHRG-----------------FKLNIWDVGGQK-- 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC--CCSSEEEEEEEETT-----------------EEEEEEEECCSH--
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc--ccCccceEEEEECC-----------------EEEEEEECCCCH--
Confidence 45899999999999999999999655 22222 23344444454443 679999999973
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH-HHHHHHhh--
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK-RMEKLKKG-- 205 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~-~~~~i~k~-- 205 (424)
.+.......++.+|++++|+|+++...+..+..... ...+.+++ ++.++.|.... ....+...
T Consensus 74 -----~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~ 145 (186)
T 1ksh_A 74 -----SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL---IFANKQDLPGALSCNAIQEALE 145 (186)
T ss_dssp -----HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHHHTT
T ss_pred -----hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEE---EEEeCccCCCCCCHHHHHHHhC
Confidence 233344566789999999999987654321110000 01122222 34555543321 01111111
Q ss_pred ---c-cC----CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 206 ---K-AK----DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 206 ---~-~~----~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
. .. ..+||+++.+++++++.+.+.+++.
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 146 LDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 0 11 1269999999999999999988754
No 76
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.44 E-value=5.6e-14 Score=122.80 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=85.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++..... ..|..+.+.....+..++. ...+.+|||||...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~-- 67 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF-QESTIGAAFLTQTVCLDDT---------------TVKFEIWDTAGQER-- 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT-CCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSGG--
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCE---------------EEEEEEEeCCCcHH--
Confidence 47999999999999999999996543321 1122222222223333321 25799999999632
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
+.......++.+|++++|+|+++...+..+...... ...++++ ++.++.|.... ....+.+
T Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ii---lv~nK~Dl~~~~~~~~~~~~~~~~ 139 (170)
T 1r2q_A 68 -----YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIA---LSGNKADLANKRAVDFQEAQSYAD 139 (170)
T ss_dssp -----GGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEE---EEEECGGGGGGCCSCHHHHHHHHH
T ss_pred -----hhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEE---EEEECccCccccccCHHHHHHHHH
Confidence 233455667899999999999875432111100000 0112222 22344443221 1111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.++.++++.+.+.++
T Consensus 140 ~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 140 DNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 111 112699999999999999987764
No 77
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.44 E-value=8.4e-14 Score=123.13 Aligned_cols=151 Identities=18% Similarity=0.152 Sum_probs=90.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.. ...+++.|+.......+.+++. ...+.+|||||..+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~ 70 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGI---------------PARLDILDTAGQEEF 70 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 35799999999999999999999653 2345566665555555555442 156899999997543
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.. .....++.+|++++|+|+++......+...... ..+.+++ ++.++.|..+. ....+
T Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~~~ 140 (181)
T 2fn4_A 71 GA-------MREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV---LVGNKADLESQRQVPRSEASAF 140 (181)
T ss_dssp SC-------CHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEE---EEEECGGGGGGCCSCHHHHHHH
T ss_pred HH-------HHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECcccccccccCHHHHHHH
Confidence 22 334456789999999999875432111100000 0112222 33455443321 11111
Q ss_pred Hhhcc--CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 203 KKGKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 203 ~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..... ...+||+++.++.++++.+.+.+.+
T Consensus 141 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 141 GASHHVAYFEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp HHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 11111 1136999999999999998877743
No 78
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=8.9e-14 Score=125.54 Aligned_cols=153 Identities=11% Similarity=0.040 Sum_probs=89.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCc-cccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++|+++|.+|||||||+|+|++.... ...+.+++|.. ...+.+++. ...+.||||||..
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNE---------------LHKFLIWDTAGQE 83 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSS---------------EEEEEEEEECCSG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCE---------------EEEEEEEcCCCch
Confidence 33589999999999999999999965532 33344444332 222333321 2579999999963
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHH
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEK 201 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~ 201 (424)
.+.......++.+|++++|+|+++......+...... ...++++ ++.++.|..+. ....
T Consensus 84 -------~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---iv~NK~Dl~~~~~v~~~~~~~ 153 (192)
T 2fg5_A 84 -------RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMA---IAGNKCDLSDIREVPLKDAKE 153 (192)
T ss_dssp -------GGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEE---EEEECGGGGGGCCSCHHHHHH
T ss_pred -------hhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEECcccccccccCHHHHHH
Confidence 2333445667899999999999876542111110000 0112222 34455554321 1111
Q ss_pred HHhhcc--CCCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 202 LKKGKA--KDSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 202 i~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
+.+... ...+||+++.+++++++.+.+.+++.
T Consensus 154 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 154 YAESIGAIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp HHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred HHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 111111 11269999999999999998887654
No 79
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.43 E-value=6.6e-14 Score=125.70 Aligned_cols=157 Identities=17% Similarity=0.174 Sum_probs=93.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+.+. ...+.||||||....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~- 77 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT-FDPELAATIGVDFKVKTISVDGN---------------KAKLAIWDTAGQERF- 77 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECSSGGG-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCccCCCccceEEEEEEEEECCe---------------EEEEEEEeCCCchhh-
Confidence 4799999999999999999999544 33333344444444445554432 257999999997432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccc------cccCCchhhhhhhhhcccHHHHH------HHHHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK------VDPKSDVDVINLELVFSDLDQIE------KRMEKLK 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~------~dp~~d~~~i~~el~~~~~~~i~------~~~~~i~ 203 (424)
.......++.+|++++|+|+++......+..+ .....+.+++ ++.++.|..+ .......
T Consensus 78 ------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~ 148 (195)
T 1x3s_A 78 ------RTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNM---LVGNKIDKENREVDRNEGLKFAR 148 (195)
T ss_dssp ------CCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEE---EEEECTTSSSCCSCHHHHHHHHH
T ss_pred ------hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEE---EEEECCcCcccccCHHHHHHHHH
Confidence 22445667899999999999875432111000 0000122222 3344443211 1111111
Q ss_pred hh-ccCCCcchhhHHHHHHHHHHHHHHHhCCCCccC
Q 014450 204 KG-KAKDSQSKLKEDAEKAALEKIQQALMDGKPARS 238 (424)
Q Consensus 204 k~-~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~ 238 (424)
.. .....+||+++.++.++++.+.+.+.+.+.+++
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~ 184 (195)
T 1x3s_A 149 KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184 (195)
T ss_dssp HTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGGTC
T ss_pred HcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence 11 111136999999999999999998877655443
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.43 E-value=1.3e-12 Score=117.20 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=60.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.. .....|..+.+.....+.+++.. ..+.||||||..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~-- 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRF-PDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQE-- 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSH--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCch--
Confidence 358999999999999999999995443 23334555555555555554421 569999999962
Q ss_pred CCcccchh-hhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLG-NKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~-~~~l~~i~~aD~il~Vvda~ 162 (424)
.+. ......++.+|++++|+|++
T Consensus 81 -----~~~~~~~~~~~~~~d~iilv~D~~ 104 (189)
T 1z06_A 81 -----RFRKSMVQHYYRNVHAVVFVYDMT 104 (189)
T ss_dssp -----HHHTTTHHHHHTTCCEEEEEEETT
T ss_pred -----hhhhhhhHHHhcCCCEEEEEEECc
Confidence 222 33455678999999999984
No 81
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.43 E-value=1.4e-12 Score=114.78 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|++.......+.+++|. ....+.+++. ...+.+|||||.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGE---------------DTTLVVVDTWEAEKLD 66 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTE---------------EEEEEEECCC------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCE---------------EEEEEEEecCCCCccc
Confidence 4799999999999999999999766555555444442 3344444432 1568999999974321
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
........++.+|++++|+|++
T Consensus 67 -----~~~~~~~~~~~~~~~i~v~d~~ 88 (175)
T 2nzj_A 67 -----KSWSQESCLQGGSAYVIVYSIA 88 (175)
T ss_dssp ------CHHHHHTTTSCSEEEEEEETT
T ss_pred -----hhhhHHhhcccCCEEEEEEECC
Confidence 1112234467899999999984
No 82
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.43 E-value=9.4e-14 Score=125.90 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
.....++|+++|.+|||||||+|+|++.. ....++.|+.+.....+...+. ...+.+|||||.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~ 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGR---------------PVRLQLCDTAGQ 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTE---------------EEEEEEEECCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCE---------------EEEEEEEECCCC
Confidence 34456899999999999999999999544 3455566666555555555442 146889999998
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
..... .....++++|++++|+|+++...
T Consensus 79 ~~~~~-------~~~~~~~~~~~~i~v~d~~~~~s 106 (201)
T 2q3h_A 79 DEFDK-------LRPLCYTNTDIFLLCFSVVSPSS 106 (201)
T ss_dssp TTCSS-------SGGGGGTTCSEEEEEEETTCHHH
T ss_pred HHHHH-------HhHhhcCCCcEEEEEEECCCHHH
Confidence 54332 23345788999999999987543
No 83
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.43 E-value=4.6e-13 Score=133.59 Aligned_cols=157 Identities=23% Similarity=0.223 Sum_probs=98.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.||||||||+|+|++. ...++++|++|.+...+.+...+ ..+.++||||+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA-KPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS-CCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCccc
Confidence 45689999999999999999999954 47788899999998888776554 5699999999975
Q ss_pred CCCcc-cch-hhhhhhhhhccceEEEEeecCCCC--ceeeeccc---ccc-CCchhhhhhhhhcccHHHHHH-----HHH
Q 014450 134 GASQG-EGL-GNKFLSHIREVDSILQVVRCFEDN--DIVHVNGK---VDP-KSDVDVINLELVFSDLDQIEK-----RME 200 (424)
Q Consensus 134 ~~~~~-~~~-~~~~l~~i~~aD~il~Vvda~~~~--~~~~~~~~---~dp-~~d~~~i~~el~~~~~~~i~~-----~~~ 200 (424)
..... ... ...+......+|++++|+|++... +....... ... ..+.+++ ++.|+.|.... ...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~pii---lV~NK~Dl~~~~~~~~~~~ 303 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFL---VVINKIDVADEENIKRLEK 303 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEE---EEECCTTTCCHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEE---EEEECcccCChHHHHHHHH
Confidence 43211 111 123333345699999999987654 21100000 000 0012222 33444443221 111
Q ss_pred HHHhh-ccCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 201 KLKKG-KAKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 201 ~i~k~-~~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+... .+...+||+++.+++++++.+.+.+.
T Consensus 304 ~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 304 FVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp HHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 11111 11123799999999999999988884
No 84
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.43 E-value=9.5e-14 Score=124.13 Aligned_cols=160 Identities=14% Similarity=0.147 Sum_probs=87.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccce-EEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+++|.+|||||||+|+|++... .....|..+.+.. ...+..++... .... ......+.+|||||..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~l~Dt~G~~- 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPD----GAVG--RGQRIHLQLWDTAGLE- 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCC----CSSC--CCEEEEEEEEEECCSG-
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcc----cccc--cCcEEEEEEEeCCCcH-
Confidence 358999999999999999999995443 2222233332222 22333332100 0000 0002579999999972
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHH------HHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIE------KRMEK 201 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~------~~~~~ 201 (424)
.+.......++.+|++++|+|+++......+..... .....+++ ++.++.|..+ .....
T Consensus 82 ------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 82 ------RFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV---LCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp ------GGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEE---EEEECTTCGGGCCSCHHHHHH
T ss_pred ------HHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECcccccccccCHHHHHH
Confidence 344456677899999999999977543211110000 00112222 2334443322 11111
Q ss_pred HHhhc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LKKGK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~k~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.+.. +...+||+++.++.++++.+.+.+.
T Consensus 153 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 153 LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11111 1123699999999999998887764
No 85
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.43 E-value=6.1e-14 Score=124.15 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ...+.+|||||....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~ 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERF 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHh
Confidence 35899999999999999999999544 333334555566666666554211 257999999996332
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc---------cCCchhhhhhhhhcccHHHHH-------HH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD---------PKSDVDVINLELVFSDLDQIE-------KR 198 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d---------p~~d~~~i~~el~~~~~~~i~-------~~ 198 (424)
.......++.+|++++|+|+++...+..+..... ....++++ ++.++.|..+ ..
T Consensus 72 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i---lv~nK~Dl~~~~~~v~~~~ 141 (182)
T 1ky3_A 72 -------QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFV---ILGNKIDAEESKKIVSEKS 141 (182)
T ss_dssp ------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEE---EEEECTTSCGGGCCSCHHH
T ss_pred -------hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEE---EEEECCccccccccCCHHH
Confidence 2234456789999999999987543211110000 00112222 3344444311 11
Q ss_pred HHHHHhhccC---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 199 MEKLKKGKAK---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 199 ~~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+.+.... ..+||+++.+++++++.+.+.+.
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 142 AQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1122221111 12699999999999998887653
No 86
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.43 E-value=4.3e-14 Score=125.04 Aligned_cols=153 Identities=13% Similarity=0.114 Sum_probs=91.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.||||||||+|+|++... .....|.++.+.....+.+++.. ...+.+|||||.....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIGG 70 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCcccc
Confidence 58999999999999999999995432 22223444455666666665411 1579999999974332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCC-------chh-hhhhhhhcccHHHHHH------HHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS-------DVD-VINLELVFSDLDQIEK------RMEK 201 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~-------d~~-~i~~el~~~~~~~i~~------~~~~ 201 (424)
......++.+|++++|+|+++...+..+......+. ..+ ++ ++.++.|..+. ....
T Consensus 71 -------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~ii---lv~nK~Dl~~~~~~~~~~~~~ 140 (178)
T 2hxs_A 71 -------KMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA---LVGNKIDLEHMRTIKPEKHLR 140 (178)
T ss_dssp -------TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEE---EEEECGGGGGGCSSCHHHHHH
T ss_pred -------chhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEE---EEEEccccccccccCHHHHHH
Confidence 234456789999999999987644211111000000 001 11 23455544321 1111
Q ss_pred HHhhc--cCCCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 202 LKKGK--AKDSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 202 i~k~~--~~~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
+.+.. +...+||+++.++.++++.+.+.+.+.
T Consensus 141 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 141 FCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 11111 112379999999999999999888643
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.43 E-value=8.1e-14 Score=125.38 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=88.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|+++... ... ..|.......+...+ ..+.+|||||..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~--~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~- 78 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFN-EDM--IPTVGFNMRKITKGN-----------------VTIKLWDIGGQP- 78 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCC-CSC--CCCCSEEEEEEEETT-----------------EEEEEEEECCSH-
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCC-Ccc--CCCCceeEEEEEeCC-----------------EEEEEEECCCCH-
Confidence 34689999999999999999999955432 111 223333333333332 679999999973
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH----HH-HHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK----RM-EKL 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~----~~-~~i 202 (424)
.+.......++.+|++++|+|+++...+..+..... ...+.+++ ++.++.|.... .+ ..+
T Consensus 79 ------~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~~ 149 (188)
T 1zd9_A 79 ------RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL---VLGNKRDLPGALDEKELIEKM 149 (188)
T ss_dssp ------HHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEE---EEEECTTSTTCCCHHHHHHHT
T ss_pred ------hHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEE---EEEECCCCccCCCHHHHHHHh
Confidence 233344556789999999999987654321111000 01122233 44555554321 11 111
Q ss_pred Hhh-c-cC----CCcchhhHHHHHHHHHHHHHHHh
Q 014450 203 KKG-K-AK----DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~-~-~~----~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... . .. ..+||+++.++.++++.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 150 NLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred ChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 110 0 11 12699999999999999987764
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.42 E-value=6.4e-14 Score=125.13 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=85.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|+++......+..+ .....+.+.+ ..+.+|||||...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINN-----------------TRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETT-----------------EEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECC-----------------EEEEEEECCCCHh
Confidence 346899999999999999999999655433333322 2223343333 6799999999843
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH----HHHH-H
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK----RMEK-L 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~----~~~~-i 202 (424)
. .......++.+|++++|+|+++...+..+...... ..+.+++ ++.++.|.... .+.. +
T Consensus 78 ~-------~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~~ 147 (181)
T 2h17_A 78 L-------RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLL---IFANKQDVKECMTVAEISQFL 147 (181)
T ss_dssp G-------TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHHHT
T ss_pred H-------HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEE---EEEECCCcccCCCHHHHHHHh
Confidence 2 23445667899999999999876543211110000 1122223 44555554321 1111 1
Q ss_pred H--hhccC----CCcchhhHHHHHHHHHHHHH
Q 014450 203 K--KGKAK----DSQSKLKEDAEKAALEKIQQ 228 (424)
Q Consensus 203 ~--k~~~~----~~~Sak~~~~~~~ll~~i~~ 228 (424)
. ..... ..+||+++.++.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 148 KLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp TGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred CcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 1 00111 12699999999999988764
No 89
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.42 E-value=1.4e-13 Score=120.10 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=86.8
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|+++... ...| |.......+...+ ..+.+|||||..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~---- 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQD---- 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCG----
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECC-----------------EEEEEEEcCCCh----
Confidence 48999999999999999999965432 2223 4444444444433 679999999983
Q ss_pred cccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH----HHH-HHHh-
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK----RME-KLKK- 204 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~----~~~-~i~k- 204 (424)
.+.......++++|++++|+|+++...+..+..... ...+.+++ ++.++.|..+. .+. ....
T Consensus 56 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 129 (164)
T 1r8s_A 56 ---KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL---VFANKQDLPNAMNAAEITDKLGLH 129 (164)
T ss_dssp ---GGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHHHTTGG
T ss_pred ---hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEE---EEEECcCCcCCCCHHHHHHHhCcc
Confidence 233344556789999999999987654321111000 01122222 44555554321 111 1110
Q ss_pred hcc-----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GKA-----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~~-----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ...+||+++.++.++++.+.+.+.
T Consensus 130 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 130 SLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp GCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 011 112699999999999999988764
No 90
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.42 E-value=1.2e-13 Score=123.90 Aligned_cols=147 Identities=14% Similarity=0.201 Sum_probs=89.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.... ..| |.......+...+ ..+.+|||||....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT--TVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE--ECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--cCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhH
Confidence 45899999999999999999998554332 223 3344444454443 67999999998543
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH----HHH-HHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK----RME-KLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~----~~~-~i~ 203 (424)
.. .....++.+|++++|+|+++...+..+..... ...+.+++ ++.++.|..+. ... .+.
T Consensus 80 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~ 149 (189)
T 2x77_A 80 RP-------YWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLL---IFANKQDLPDAASEAEIAEQLG 149 (189)
T ss_dssp CC-------CCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEE---EEEECTTSTTCCCHHHHHHHTT
T ss_pred HH-------HHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEE---EEEECCCCcCCCCHHHHHHHhC
Confidence 32 23345689999999999987654321111000 01122333 44555554321 111 111
Q ss_pred h-hccC-----CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 204 K-GKAK-----DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k-~~~~-----~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
. .... ..+||+++.++.++++.+.+.+++
T Consensus 150 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 150 VSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 0 1111 126999999999999999988864
No 91
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.42 E-value=3.8e-12 Score=113.21 Aligned_cols=85 Identities=18% Similarity=0.108 Sum_probs=57.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++... ...+..++.......+..++. ...+.+|||||...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 78 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQ---------------WAILDVLDTAGQEE 78 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCSCGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCc---------------EEEEEEEECCCchh
Confidence 3458999999999999999999995432 233334444433444444442 14577899999643
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.. ......++.+|++++|+|++
T Consensus 79 ~~-------~~~~~~~~~~d~~i~v~d~~ 100 (183)
T 3kkq_A 79 FS-------AMREQYMRTGDGFLIVYSVT 100 (183)
T ss_dssp GC-------SSHHHHHHHCSEEEEEEETT
T ss_pred hH-------HHHHHHHhcCCEEEEEEECC
Confidence 22 23445578899999999984
No 92
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.42 E-value=6.6e-12 Score=108.69 Aligned_cols=82 Identities=18% Similarity=0.141 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|++.... ..++.++.+.....+...+. ...+.+|||||..+..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~~~~- 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS- 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCE---------------EEEEEEEECCCchhhh-
Confidence 68999999999999999999965432 23334443333344444331 2568999999974322
Q ss_pred cccchhhhhhhhhhccceEEEEeecC
Q 014450 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 137 ~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......++.+|++++|+|++
T Consensus 66 ------~~~~~~~~~~~~~i~v~d~~ 85 (166)
T 2ce2_X 66 ------AMRDQYMRTGEGFLCVFAIN 85 (166)
T ss_dssp ------HHHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHhhccCCEEEEEEECC
Confidence 23345577899999999974
No 93
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.42 E-value=3.8e-14 Score=127.48 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=89.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++....... ...|.......+.+++ ..+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRY 80 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSS-----------------CEEEEEEECCSTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECC-----------------EEEEEEECCCCHHH
Confidence 4589999999999999999999954422222 2345555555565544 67999999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cC--CchhhhhhhhhcccHHHHHH----HH-HH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PK--SDVDVINLELVFSDLDQIEK----RM-EK 201 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~--~d~~~i~~el~~~~~~~i~~----~~-~~ 201 (424)
.......++.+|++++|+|+++...+..+..... .. .+.+++ ++.++.|.... .+ ..
T Consensus 81 -------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~ 150 (190)
T 2h57_A 81 -------RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPIL---FFANKMDLRDAVTSVKVSQL 150 (190)
T ss_dssp -------GGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEE---EEEECTTSTTCCCHHHHHHH
T ss_pred -------HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEE---EEEeCcCcccCCCHHHHHHH
Confidence 2344566789999999999987543211110000 00 122223 34555543321 11 11
Q ss_pred HH--hhccC----CCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LK--KGKAK----DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~--k~~~~----~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+. ..... ..+||+++.++.++++.+.+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 151 LCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp HTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred hChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 11 11111 12699999999999999988763
No 94
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.42 E-value=1.8e-12 Score=116.72 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=58.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+++. ...+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 83 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVNIDGK---------------QIKLQIWDTAGQESF 83 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-C-----CCSSEEEEEEEETTE---------------EEEEEEECCTTGGGT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 3589999999999999999999955433 233344455555555555442 157999999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. ......++.+|++++|+|++
T Consensus 84 ~-------~~~~~~~~~~d~ii~v~d~~ 104 (191)
T 2a5j_A 84 R-------SITRSYYRGAAGALLVYDIT 104 (191)
T ss_dssp S-------CCCHHHHTTCSEEEEEEETT
T ss_pred h-------hhHHHHhccCCEEEEEEECC
Confidence 2 23455678899999999984
No 95
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.42 E-value=6.6e-14 Score=127.47 Aligned_cols=83 Identities=18% Similarity=0.369 Sum_probs=57.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.+|||||||+|+|+++..... ..|..+..+.+.+++ .++.+|||||.....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~----~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQH----VPTLHPTSEELTIAG-----------------MTFTTFDLGGHIQAR 83 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETT-----------------EEEEEEEECC----C
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCcc----CCCCCceeEEEEECC-----------------EEEEEEECCCcHhhH
Confidence 57999999999999999999996553322 234444556666554 679999999974432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
. .+...++.+|++++|+|+++...
T Consensus 84 ~-------~~~~~~~~~d~~i~v~D~~~~~s 107 (198)
T 1f6b_A 84 R-------VWKNYLPAINGIVFLVDCADHER 107 (198)
T ss_dssp C-------GGGGGGGGCSEEEEEEETTCGGG
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHHH
Confidence 2 34456789999999999987654
No 96
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.42 E-value=1e-12 Score=127.99 Aligned_cols=204 Identities=16% Similarity=0.189 Sum_probs=105.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCC-----ccccCCC---CccccceE---------EEe-ecCCCcchhh-------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-----AQAANFP---FCTIEPNV---------GIV-AVPDPRLHVL------- 109 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~-----~~~s~~p---~tT~~~~~---------~~~-~~~~~~~d~l------- 109 (424)
..++|+++|.||||||||+|+|+|... ..++..| .+|+.+.. +.+ ..++.....+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 357999999999999999999997765 3344455 33332210 000 0011000000
Q ss_pred -------c-------------cccccccccCceEEEEeCCCCCCCC------CcccchhhhhhhhhhccceEEEEeecCC
Q 014450 110 -------S-------------GLSKSQKAVPASVEFVDIAGLVKGA------SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 110 -------~-------------~~~~~~~~~~~~i~lvDtpG~~~~~------~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
. +++.|. ..++.||||||+.+.. ...+.+...+...++.+|++++|+|++.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~ 179 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPH---VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPAN 179 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETT---SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCC---CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecC
Confidence 0 001111 2579999999997522 1123455677888999999999999743
Q ss_pred CCce----eeeccccccCCchhhhhhhhhcccHHHHHH---HHHHHHhh-cc-------CCCcchhh---HHHHHHHHHH
Q 014450 164 DNDI----VHVNGKVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKG-KA-------KDSQSKLK---EDAEKAALEK 225 (424)
Q Consensus 164 ~~~~----~~~~~~~dp~~d~~~i~~el~~~~~~~i~~---~~~~i~k~-~~-------~~~~Sak~---~~~~~~ll~~ 225 (424)
.... ..+....++ ...+++ +++|++|.+.. ....+... .. ....|+.+ +.++.++++.
T Consensus 180 ~~~~~~~~~~i~~~~~~-~~~~~i---~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-EGKRTI---GVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-SCSSEE---EEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred cchhhhHHHHHHHHhCC-CCCcEE---EEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 2210 001000111 011111 33455544321 12222211 11 11146666 6788999999
Q ss_pred HHHHHhCCCCccCC--CCCHH-HHHHHH-HHhhhhccceEEecc
Q 014450 226 IQQALMDGKPARSV--TLNDF-ERDSIK-QLCLLTMKPIIYVAN 265 (424)
Q Consensus 226 i~~~L~~~~~~~~~--~~t~~-e~e~ir-~~~~l~~kpi~y~~n 265 (424)
+.+.++.++++.+. ..+.. -...++ .+...+.+++||...
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~ 299 (315)
T 1jwy_B 256 EILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV 299 (315)
T ss_dssp HHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999988774421 12222 133466 556667777776643
No 97
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.42 E-value=9.3e-14 Score=126.12 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=85.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+++. ...+.||||||...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFR-ENISATLGVDFQMKTLIVDGE---------------RTVLQLWDTAGQER 89 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC-----------CEEEEEEETTE---------------EEEEEEEECTTCTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCCccceeEEEEEEECCE---------------EEEEEEEECCCCcc
Confidence 34689999999999999999999955422 122232333333344444432 15699999999632
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH----------
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR---------- 198 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~---------- 198 (424)
+.......++.+|++++|+|+++...+..+..+...+ .+.+++ ++.++.|..+..
T Consensus 90 -------~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~v~~ 159 (199)
T 2p5s_A 90 -------FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIM---LVGNKADIRDTAATEGQKCVPG 159 (199)
T ss_dssp -------CHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEE---EEEECGGGHHHHHHTTCCCCCH
T ss_pred -------hhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEE---EEEECcccccccccccccccCH
Confidence 2334556688999999999997754321111110000 112222 445666554210
Q ss_pred --HHHHHhhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 199 --MEKLKKGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 199 --~~~i~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+.+... ...+||+++.++.++++.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 113699999999999998887764
No 98
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.42 E-value=8.3e-14 Score=127.02 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=87.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++... .....|..+.+.....+.+++. ...+.||||||..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~- 89 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAF-SERQGSTIGVDFTMKTLEIQGK---------------RVKLQIWDTAGQE- 89 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTE---------------EEEEEEECCTTCG-
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCC-CCCCCCCcceEEEEEEEEECCE---------------EEEEEEEECCCcH-
Confidence 3458999999999999999999995542 2222333334444455555432 1579999999973
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.+.......++.+|++++|+|+++...+..+..+... ..+++++ ++.++.|..+. ....+
T Consensus 90 ------~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pii---lv~NK~Dl~~~~~v~~~~~~~~ 160 (201)
T 2hup_A 90 ------RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQL---LIGNKSDLSELREVSLAEAQSL 160 (201)
T ss_dssp ------GGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEE---EEEECTTCGGGCCSCHHHHHHH
T ss_pred ------hHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE---EEEECCccccccccCHHHHHHH
Confidence 2333455667899999999999875432111100000 0112222 33444443221 11111
Q ss_pred HhhccC---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 203 KKGKAK---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 203 ~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+.... ..+||+++.+++++++.+.+.+.+
T Consensus 161 ~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 161 AEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111 236999999999999998887753
No 99
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.42 E-value=7.3e-14 Score=125.51 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=86.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+...+. ...+.+|||||.....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFT-PAFVSTVGIDFKVKTVYRHDK---------------RIKLQIWDTAGQERYR 85 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCCCEEEEEEEEETTE---------------EEEEEEEECCSCCSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCcCCceeEEEEEEEEEECCe---------------EEEEEEEeCCCcHHHh
Confidence 589999999999999999999965432 222233333333333333331 2579999999974332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~k 204 (424)
......++.+|++++|+|+++...+..+......+ ...+++ ++.++.|..+. ....+.+
T Consensus 86 -------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~~ 155 (189)
T 2gf9_A 86 -------TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVI---LVGNKCDLEDERVVPAEDGRRLAD 155 (189)
T ss_dssp -------CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEE---EEEECTTCGGGCCSCHHHHHHHHH
T ss_pred -------hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEE---EEEECcccccccCCCHHHHHHHHH
Confidence 24456678999999999997654321111000000 111122 33444443221 1111111
Q ss_pred hc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. ....+||+++.++.++++.+.+.+.
T Consensus 156 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 156 DLGFEFFEASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 11 1123699999999999999887764
No 100
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.41 E-value=2.1e-13 Score=124.59 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+++++.. ...++.|+.+.....+...+. ...+.+|||||...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~- 90 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLED- 90 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-C---------------EEEEEEEEECCSGG-
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCE---------------EEEEEEEECCCchh-
Confidence 468999999999999999999995433 334455665555555555442 25677999999833
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeec-cccccC----CchhhhhhhhhcccHHHHHHHH----------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDPK----SDVDVINLELVFSDLDQIEKRM---------- 199 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp~----~d~~~i~~el~~~~~~~i~~~~---------- 199 (424)
+.......++.+|++++|+|+++...+..+. .....+ .+.+++ ++.++.|......
T Consensus 91 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 4gzl_A 91 ------YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII---LVGTKLDLRDDKDTIEKLKEKKL 161 (204)
T ss_dssp ------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE---EEEECHHHHTCHHHHHHHHHTTC
T ss_pred ------hHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEechhhccchhhhhhhhcccc
Confidence 2234455678999999999998765432211 000000 122333 4567777654211
Q ss_pred --------HHHHhhccC---CCcchhhHHHHHHHHHHHHHH
Q 014450 200 --------EKLKKGKAK---DSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 200 --------~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~ 229 (424)
..+.+.... ..+||+++.+++++++.+.+.
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 011111111 126999999999998888764
No 101
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.41 E-value=4.7e-14 Score=127.94 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCcc-ccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT-~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+++|.+|||||||+|+|++......+.++.|+ .+.....+.+++.. ....+.||||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~- 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSD- 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTH-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcH-
Confidence 3579999999999999999999965333333444443 35555566665420 01579999999983
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------c--CCchhhhhhhhhcccHHHHH-H------H
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------P--KSDVDVINLELVFSDLDQIE-K------R 198 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p--~~d~~~i~~el~~~~~~~i~-~------~ 198 (424)
.+.......++.+|++++|+|+++...+..+..... + ....+++ ++.++.|..+ . .
T Consensus 85 ------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii---lv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 85 ------LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAV---LVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp ------HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEE---EEEECC-------CCCHHH
T ss_pred ------HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEE---EEEECcccchhhccCCHHH
Confidence 233455666889999999999987654221111100 0 0223333 5567776654 1 1
Q ss_pred HHHHHhhcc--CCCcchhh-HHHHHHHHHHHHHHHh
Q 014450 199 MEKLKKGKA--KDSQSKLK-EDAEKAALEKIQQALM 231 (424)
Q Consensus 199 ~~~i~k~~~--~~~~Sak~-~~~~~~ll~~i~~~L~ 231 (424)
...+.+... ...+||++ +.++.++++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 156 AQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHTTCEEEECCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 111111111 11269999 9999999999888764
No 102
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=124.87 Aligned_cols=152 Identities=19% Similarity=0.145 Sum_probs=87.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.... ..++.|+.......+...+. ...+.||||||...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKD---------------EFHLHLVDTAGQDE 84 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC-------------------CEEEEEEEECCCCT
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCE---------------EEEEEEEECCCccc
Confidence 34689999999999999999999965543 33334444333444443331 26689999999754
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH------HHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK------RMEK 201 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~------~~~~ 201 (424)
... .....++.+|++++|+|+++...+..+...... ..+++++ ++.++.|.... ....
T Consensus 85 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~~ 154 (201)
T 3oes_A 85 YSI-------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVV---LVGNKADLSPEREVQAVEGKK 154 (201)
T ss_dssp TCC-------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEE---EEEECTTCGGGCCSCHHHHHH
T ss_pred hHH-------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccCccccccCHHHHHH
Confidence 332 344567889999999999865432111100000 0111222 33444432211 1111
Q ss_pred HHhhc--cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 202 LKKGK--AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 202 i~k~~--~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+.+.. ....+||+++.++.++++.+.+.+.+
T Consensus 155 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 155 LAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 11111 11237999999999999999888754
No 103
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=124.17 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=87.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++...... ..+..+.+.....+.+++. ...+.||||||...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHD-SRTTIGVEFSTRTVMLGTA---------------AVKAQIWDTAGLER 86 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSS-CCCCSSEEEEEEEEEETTE---------------EEEEEEEEESCCCT
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCccceeEEEEEEEECCE---------------EEEEEEEeCCCchh
Confidence 3458999999999999999999996554322 2222222222233333321 25789999999854
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.. ......++.+|++++|+|+++...+..+...... ..+.+++ ++.++.|.... ....+
T Consensus 87 ~~-------~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~ 156 (193)
T 2oil_A 87 YR-------AITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM---LVGNKSDLSQAREVPTEEARMF 156 (193)
T ss_dssp TC-------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEE---EEEECGGGGGGCCSCHHHHHHH
T ss_pred hh-------hhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE---EEEECCCcccccccCHHHHHHH
Confidence 32 2445567899999999999875432111100000 0112222 33455443321 11111
Q ss_pred Hhhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 203 KKGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.+... ...+||+++.++.++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 157 AENNGLLFLETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 11111 113699999999999998877663
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.41 E-value=7.4e-14 Score=145.13 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=94.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+|+|.||||||||+|+|++... +. .+.|++...+.+...+ ..+.||||||...
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~--~~--~~~T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~-- 378 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS--VT--TIPTVGFNVETVTYKN-----------------VKFNVWDVGGQDK-- 378 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CC--CCCCSSEEEEEEESSS-----------------CEEEEEEECCCGG--
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC--CC--cCCccceeEEEEEeCC-----------------EEEEEEECCCcHH--
Confidence 48999999999999999999996663 22 3447788888777654 6799999999633
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH-HHHHHHhhc--
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK-RMEKLKKGK-- 206 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~-~~~~i~k~~-- 206 (424)
+...+...++.+|++|+|+|+++...+..+..... ...+++++ ++.|+.|..+. ....+.+..
T Consensus 379 -----~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~i---lv~NK~Dl~~~~~~~~~~~~~~~ 450 (497)
T 3lvq_E 379 -----IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIIL---IFANKQDLPDAMKPHEIQEKLGL 450 (497)
T ss_dssp -----GSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEE---EEEECCSSSSCCCHHHHHHHTTC
T ss_pred -----HHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEE---EEEECCCCCcCCCHHHHHHHhch
Confidence 33346677899999999999987654322111100 01122333 44555553211 001111111
Q ss_pred ---c-----CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 207 ---A-----KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 207 ---~-----~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
. ...+||+++.+++++++.|.+.+..
T Consensus 451 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 451 TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 484 (497)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC-
T ss_pred hhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0 1126999999999999999988854
No 105
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.41 E-value=9.6e-14 Score=125.17 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=87.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.....+...| |.......+...+ ..+.||||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGR-----------------VAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETT-----------------EEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCC-----------------EEEEEEECCCCHh
Confidence 34689999999999999999999965544322222 3333333343322 6799999999832
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-------------CchhhhhhhhhcccHHHHHH---
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-------------SDVDVINLELVFSDLDQIEK--- 197 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-------------~d~~~i~~el~~~~~~~i~~--- 197 (424)
+.......++.+|++++|+|+++...+..+......+ .+++++ ++.++.|....
T Consensus 76 -------~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~ 145 (199)
T 4bas_A 76 -------FRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFL---FFANKMDAAGAKTA 145 (199)
T ss_dssp -------GGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEE---EEEECTTSTTCCCH
T ss_pred -------HHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEE---EEEECcCCCCCCCH
Confidence 2334455678999999999998765432211100000 022222 33444443221
Q ss_pred -HH-HHH--Hhh---c--cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 -RM-EKL--KKG---K--AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 -~~-~~i--~k~---~--~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+ ..+ ... . ....+||+++.+++++++.+.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 146 AELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp HHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 01 111 111 0 01126999999999999999887753
No 106
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.41 E-value=2e-13 Score=123.16 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=90.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++... ...+..|+.......+...+. ...+.+|||||...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~- 83 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNE---------------EFILHLWDTAGQEE- 83 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSGG-
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCE---------------EEEEEEEECCCcHH-
Confidence 358999999999999999999996552 233344443333334444432 25679999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeee-ccccc----cCCchhhhhhhhhcccHHHHH--------HHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV-NGKVD----PKSDVDVINLELVFSDLDQIE--------KRMEK 201 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~-~~~~d----p~~d~~~i~~el~~~~~~~i~--------~~~~~ 201 (424)
+.......++++|++++|+|+++...+..+ ..... ...+.+++ ++.++.|..+ .....
T Consensus 84 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i---lv~nK~Dl~~~~~~~~~~~~~~~ 154 (194)
T 3reg_A 84 ------YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV---LVGLKVDLRKDGSDDVTKQEGDD 154 (194)
T ss_dssp ------GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEE---EEEECGGGCCTTTTCCCHHHHHH
T ss_pred ------HHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEEChhhccCCCCcccHHHHHH
Confidence 223445567899999999999876432211 00000 00112222 3344444321 11111
Q ss_pred HHhhccC---CCcchhhHHHHHHHHHHHHHHHhCC
Q 014450 202 LKKGKAK---DSQSKLKEDAEKAALEKIQQALMDG 233 (424)
Q Consensus 202 i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~~~ 233 (424)
+.+.... ..+||+++.++.++++.+.+.+...
T Consensus 155 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 155 LCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 2111121 2379999999999999998887554
No 107
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.40 E-value=6.1e-12 Score=112.67 Aligned_cols=83 Identities=18% Similarity=0.164 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+...+. ...+.+|||||.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~~ 83 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQEEYS 83 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC-----
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCE---------------EEEEEEEECCChHHHH
Confidence 47999999999999999999996543 234445554444444444432 1568999999974322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
......++.+|++++|+|++
T Consensus 84 -------~~~~~~~~~~d~~i~v~d~~ 103 (190)
T 3con_A 84 -------AMRDQYMRTGEGFLCVFAIN 103 (190)
T ss_dssp -------------CTTCSEEEEEEETT
T ss_pred -------HHHHHhhCcCCEEEEEEECc
Confidence 23345578899999999984
No 108
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.40 E-value=1.1e-13 Score=125.03 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
..+|+++|.||||||||+|+|+++..... ..|..+..+.+.+++ ..+.++||||.....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~----~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATL----QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCC----CCCCSCEEEEEEETT-----------------EEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcc----ccCCCCCeEEEEECC-----------------EEEEEEECCCCHHHH
Confidence 47999999999999999999996654322 345555666666654 679999999984322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
......++.+|++++|+|+++..+
T Consensus 82 -------~~~~~~~~~~d~~i~v~d~~~~~s 105 (190)
T 1m2o_B 82 -------RLWKDYFPEVNGIVFLVDAADPER 105 (190)
T ss_dssp -------TSGGGGCTTCCEEEEEEETTCGGG
T ss_pred -------HHHHHHHhcCCEEEEEEECCChHH
Confidence 233455689999999999987654
No 109
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=7.4e-13 Score=119.20 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=58.7
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
....++|+++|.+|||||||+|+|++.... ....|..+.+.....+...+. ...+.||||||.
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~- 82 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFT-PAFVSTVGIDFKVKTVYRHEK---------------RVKLQIWDTAGQ- 82 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTC-CCEEEEETTTEEEEEEEETTT---------------TEEEEEECHHHH-
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCC-cccCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCh-
Confidence 345689999999999999999999954422 111222233333333333331 267999999995
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
+.+.......++.+|++++|+|++
T Consensus 83 ------~~~~~~~~~~~~~~d~~i~v~d~~ 106 (191)
T 3dz8_A 83 ------ERYRTITTAYYRGAMGFILMYDIT 106 (191)
T ss_dssp ------HHCHHHHHHHHTTCCEEEEEEETT
T ss_pred ------HHHHHHHHHHHccCCEEEEEEECc
Confidence 233345566788999999999984
No 110
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.40 E-value=7.3e-14 Score=128.31 Aligned_cols=162 Identities=16% Similarity=0.161 Sum_probs=88.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++... .....+.....+.||||||.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~l~Dt~G~-- 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK-FNPKFITTVGIDFREKRVVYNAQGP-----NGSSGKAFKVHLQLWDTAGQ-- 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC-CCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEEEEEEESH--
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC-CCcCCCCceeEEEEEEEEEECCccc-----cccccCceeEEEEEEECCCc--
Confidence 345899999999999999999999443 2222223233333333333332100 00000111257999999996
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC------CchhhhhhhhhcccHHHHHH------HHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK------SDVDVINLELVFSDLDQIEK------RMEK 201 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~------~d~~~i~~el~~~~~~~i~~------~~~~ 201 (424)
+.+.......++.+|++++|+|+++...+..+..+...+ .+.+++ ++.++.|.... ....
T Consensus 95 -----~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~pii---lV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 95 -----ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp -----HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEE---EEEECTTCGGGCCSCHHHHHH
T ss_pred -----HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEE---EEEECCccccccccCHHHHHH
Confidence 334445567789999999999998754321111110000 122222 33444443221 1111
Q ss_pred HHhhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 LKKGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 i~k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+.+... ...+||+++.++.++++.+.+.+.
T Consensus 167 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 167 LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 111111 113699999999999998887763
No 111
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.40 E-value=3e-14 Score=137.60 Aligned_cols=200 Identities=15% Similarity=0.168 Sum_probs=102.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc-----cccCCCCccccceE----E-EeecCC---Ccchhhc-----------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QAANFPFCTIEPNV----G-IVAVPD---PRLHVLS----------- 110 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~-----~~s~~p~tT~~~~~----~-~~~~~~---~~~d~l~----------- 110 (424)
..++|+++|.||||||||+|+|+|.... .++..|+.|+-.+. + .+...+ ...+.+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999976654 33444431110000 0 000000 0011000
Q ss_pred -------------cccccccccCceEEEEeCCCCCCCC----Cc--ccchhhhhhhhhhccceEE-EEeecCCCCcee--
Q 014450 111 -------------GLSKSQKAVPASVEFVDIAGLVKGA----SQ--GEGLGNKFLSHIREVDSIL-QVVRCFEDNDIV-- 168 (424)
Q Consensus 111 -------------~~~~~~~~~~~~i~lvDtpG~~~~~----~~--~~~~~~~~l~~i~~aD~il-~Vvda~~~~~~~-- 168 (424)
.++.|. ..++.||||||+.... +. ...+...+...++.+|.++ +|+|++.+....
T Consensus 105 g~~~gi~~~~~~~~~~~~~---~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp SSTTCCCSCCEEEEEEETT---CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred ccCCCccccceEEEEeCCC---CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 000110 2569999999997532 11 1134455667777887665 799997643210
Q ss_pred -eeccccccCCchhhhhhhhhcccHHHHHHH---HHHHHhhc--------cCCCcchhhHHHHHHHHHHHHHHHhCCCCc
Q 014450 169 -HVNGKVDPKSDVDVINLELVFSDLDQIEKR---MEKLKKGK--------AKDSQSKLKEDAEKAALEKIQQALMDGKPA 236 (424)
Q Consensus 169 -~~~~~~dp~~d~~~i~~el~~~~~~~i~~~---~~~i~k~~--------~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~ 236 (424)
.+....++. ..+++ ++++++|.++.. ...+.... ....+||+++.++.++++.+.+. ++++
T Consensus 182 ~~~~~~~~~~-~~~~i---~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~---~~~~ 254 (299)
T 2aka_B 182 LKIAKEVDPQ-GQRTI---GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE---RKFF 254 (299)
T ss_dssp HHHHHHHCTT-CSSEE---EEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH---HHHH
T ss_pred HHHHHHhCCC-CCeEE---EEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH---HHHH
Confidence 011111111 11222 345555544321 11222110 11236999999999998888763 3333
Q ss_pred cCC-CCCHH--------HHHHHH-HHhhhhccceEEec
Q 014450 237 RSV-TLNDF--------ERDSIK-QLCLLTMKPIIYVA 264 (424)
Q Consensus 237 ~~~-~~t~~--------e~e~ir-~~~~l~~kpi~y~~ 264 (424)
++. .|++. -.++++ .+...+.+++||..
T Consensus 255 ~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 255 LSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp HHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 332 12221 246666 55566777777654
No 112
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.40 E-value=1.3e-13 Score=122.52 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=85.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++...... .|.......+.+++ ..+.+|||||....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKN-----------------LKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETT-----------------EEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC----CcCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 4689999999999999999999954442222 23333334444433 67999999998543
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHHHH----HHHHHHh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQIEK----RMEKLKK 204 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i~~----~~~~i~k 204 (424)
.. .....++.+|++++|+|+++...+..+...... ..+.+++ ++.++.|..+. .+.....
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~i~~~~~ 145 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALL---VFANKQDQPGALSASEVSKELN 145 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEE---EEEECTTSTTCCCHHHHHHHTT
T ss_pred HH-------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEE---EEEECCCCCCCCCHHHHHHHhC
Confidence 22 345567899999999999876543211110000 1222333 44555553321 1111111
Q ss_pred hc--c-C----CCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK--A-K----DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~--~-~----~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. . . ..+||+++.+++++++.+.+.++
T Consensus 146 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 146 LVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp TTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 00 1 1 12699999999999999988774
No 113
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.40 E-value=5.2e-12 Score=110.38 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=53.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++.. .....|... ......+...+. ...+.+|||||..+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~-~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~- 64 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVE-DTYRQVISCDKS---------------ICTLQITDTTGSHQF- 64 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCSC-EEEEEEEEETTE---------------EEEEEEEECCSCSSC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCcc-ccEEEEEEECCE---------------EEEEEEEECCCchhh-
Confidence 47999999999999999999995432 222222111 111112222221 256899999997432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.......++.+|++++|+|++
T Consensus 65 ------~~~~~~~~~~~~~~i~v~d~~ 85 (172)
T 2erx_A 65 ------PAMQRLSISKGHAFILVYSIT 85 (172)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETT
T ss_pred ------HHHHHHhcccCCEEEEEEECc
Confidence 234455678899999999985
No 114
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=126.26 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=84.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++ .......|..+.+.....+.+++.. ..+.||||||...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~- 86 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN-KFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQER- 86 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEE---------------EEEEEECCTTHHH-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC-CCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHh-
Confidence 3589999999999999999999944 4434444555555555555554421 5799999999632
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
+.......++.+|++++|+|+++......+......+ .+.+++ ++.++.|.... ....+.
T Consensus 87 ------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~~~~ 157 (200)
T 2o52_A 87 ------FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVI---LCGNKKDLDPEREVTFLEASRFA 157 (200)
T ss_dssp ------HSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEE---EEEECGGGGGGCCSCHHHHHHHH
T ss_pred ------HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEE---EEEECCCcccccccCHHHHHHHH
Confidence 2223455678999999999998754321111100000 112222 33444443221 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... ...+||+++.++.++++.+.+.+.
T Consensus 158 ~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 158 QENELMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111 112699999999999988877664
No 115
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.40 E-value=1.3e-13 Score=122.44 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=81.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+++++.. ...++.|+.+.....+...+ ....+.+|||||....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~---------------~~~~~~i~Dt~G~~~~ 69 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNG---------------ATVNLGLWDTAGQEDY 69 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC----------------------CEEECCCC-CTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECC---------------EEEEEEEEECCCChhh
Confidence 358999999999999999999995542 22333333322221122221 1255789999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeec-cccccC----CchhhhhhhhhcccHHHHHHHH----------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDPK----SDVDVINLELVFSDLDQIEKRM---------- 199 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp~----~d~~~i~~el~~~~~~~i~~~~---------- 199 (424)
. ......++.+|++++|+|+++...+..+. .....+ .+.+++ ++.++.|..+.+.
T Consensus 70 ~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~ 139 (182)
T 3bwd_D 70 N-------RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV---LVGTKLDLRDDKQFFIDHPGAVP 139 (182)
T ss_dssp T-------TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE---EEEECHHHHTCHHHHHHC--CCC
T ss_pred h-------hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEechhhhcCcccccccccCCC
Confidence 2 23445678899999999997765432211 010000 123333 5567777643221
Q ss_pred ------HHHHhhccC---CCcchhhHHHHHHHHHHHHHHH
Q 014450 200 ------EKLKKGKAK---DSQSKLKEDAEKAALEKIQQAL 230 (424)
Q Consensus 200 ------~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L 230 (424)
..+.+.... ..+||+++.+++++++.+.+.+
T Consensus 140 v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 140 ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 111111111 1269999999999999888766
No 116
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.39 E-value=4.9e-13 Score=122.30 Aligned_cols=150 Identities=17% Similarity=0.143 Sum_probs=93.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+.+. ...+.+|||||.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQ---------------IVNLGLWDTAGQEDYS 71 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSC---------------EEEEEEECCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 48999999999999999999995542 234455555554444544432 2579999999985433
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeec-cccccC----CchhhhhhhhhcccHHHHHHHH-----------
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDPK----SDVDVINLELVFSDLDQIEKRM----------- 199 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp~----~d~~~i~~el~~~~~~~i~~~~----------- 199 (424)
. .....++.+|++++|+|+++...+..+. .+...+ .+.+++ ++.++.|..+.+.
T Consensus 72 ~-------~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~v~~ 141 (212)
T 2j0v_A 72 R-------LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV---LVGTKLDLRDDKGYLADHTNVITS 141 (212)
T ss_dssp C---------CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEE---EEEECHHHHTCHHHHHTCSSCCCH
T ss_pred H-------HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEeCHHhhhCccccccccCCCCH
Confidence 2 2334578899999999998765432211 110000 123333 5567777643211
Q ss_pred ---HHHHhhcc---CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 200 ---EKLKKGKA---KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 200 ---~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+.+... ...+||+++.+++++++.+.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 142 TQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 11111111 1236999999999999999888754
No 117
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.39 E-value=8.9e-15 Score=132.93 Aligned_cols=150 Identities=13% Similarity=0.149 Sum_probs=86.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+ .........|.+|.+.....+.+++.. ..+.||||||.....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 96 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA-DDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFR 96 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB-CCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHh-cCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHH
Confidence 5899999999999999999999 444444455667777777777665522 569999999964332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
. .....++.+|++++|+|+++...+..+...... ..+.+++ ++.++.|....+ ...+.+
T Consensus 97 ~-------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i---lv~nK~Dl~~~~~v~~~~~~~~~~ 166 (199)
T 3l0i_B 97 T-------ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL---LVGNKCDLTTKKVVDYTTAKEFAD 166 (199)
T ss_dssp C-------CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEE---EC-CCSSCC--CCCCSCC-CHHHH
T ss_pred H-------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEE---EEEECccCCccccCCHHHHHHHHH
Confidence 2 344567889999999999876542111100000 0112222 334444432211 011111
Q ss_pred h--ccCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 G--KAKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~--~~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. .+...+||+++.++.++++.+.+.+.
T Consensus 167 ~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 167 SLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp TTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred HcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1 11223799999999999998876653
No 118
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.38 E-value=4.4e-13 Score=123.60 Aligned_cols=153 Identities=10% Similarity=0.072 Sum_probs=87.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|+++... ..+..|+.+.....+.+.+. ...+.||||||...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCHh
Confidence 44689999999999999999999955432 23333333333333344332 25799999999743
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceee-ecccccc----CCchhhhhhhhhcccHHHHH------------
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH-VNGKVDP----KSDVDVINLELVFSDLDQIE------------ 196 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~-~~~~~dp----~~d~~~i~~el~~~~~~~i~------------ 196 (424)
.. ......++.+|++++|+|+++...+.. +..+... ..+.+++ ++.++.|..+
T Consensus 88 ~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~ 157 (214)
T 3q3j_B 88 YD-------NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVL---LIGCKTDLRTDLSTLMELSHQK 157 (214)
T ss_dssp GT-------TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEE---EEEECGGGGGCHHHHHHHHHTT
T ss_pred HH-------HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEEChhhccchhhhhhhcccc
Confidence 22 233455788999999999987654322 1111000 0122222 3344444322
Q ss_pred ------HHHHHHHhhccC---CCcchhhHHH-HHHHHHHHHHHHhCC
Q 014450 197 ------KRMEKLKKGKAK---DSQSKLKEDA-EKAALEKIQQALMDG 233 (424)
Q Consensus 197 ------~~~~~i~k~~~~---~~~Sak~~~~-~~~ll~~i~~~L~~~ 233 (424)
.....+.+.... ..+||+++.+ +.++++.+.+.+...
T Consensus 158 ~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 158 QAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred cCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence 011111111111 2369999998 999999998887543
No 119
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.38 E-value=1.3e-12 Score=114.25 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=84.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc-cccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
.++|+++|.+|||||||+|+|++.... ...+.++++. ....+...+. ...+.+|||||..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~~~~~Dt~G~~-- 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF--MTKTVQYQNE---------------LHKFLIWDTAGLE-- 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE--EEEEEEETTE---------------EEEEEEEEECCSG--
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE--EEEEEEECCe---------------EEEEEEEcCCCch--
Confidence 489999999999999999999965522 2223333332 2222333321 2569999999973
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-----CCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-----KSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-----~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
.+.......++.+|++++|+|+++......+...... ...++++ ++.++.|..+. ....+.
T Consensus 67 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~ii---lv~nK~Dl~~~~~v~~~~~~~~~ 138 (170)
T 1z0j_A 67 -----RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA---IAGNKCDLTDVREVMERDAKDYA 138 (170)
T ss_dssp -----GGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEE---EEEECTTCGGGCCSCHHHHHHHH
T ss_pred -----hhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEE---EEEECCccccccccCHHHHHHHH
Confidence 2223445567889999999999875432111100000 0111111 22233332211 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... ...+||+++.++.++++.+.+.++
T Consensus 139 ~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 139 DSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 1111 112699999999999999987764
No 120
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.38 E-value=1.4e-13 Score=123.38 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.......+.++ .....+.+++ ..+.+|||||..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~-----------------~~l~i~Dt~G~~-- 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQG-----------------FKLNVWDIGGQR-- 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETT-----------------EEEEEEECSSCG--
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECC-----------------EEEEEEECCCCH--
Confidence 46899999999999999999999654333222222 2222333332 679999999973
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHHH-HHHHHhh--
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEKR-MEKLKKG-- 205 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~~-~~~i~k~-- 205 (424)
.+...+...++.+|++++|+|+++...+..+..... ...+.+++ ++.++.|..+.. ...+...
T Consensus 72 -----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~~~ 143 (181)
T 1fzq_A 72 -----KIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVL---IFANKQDLLTAAPASEIAEGLN 143 (181)
T ss_dssp -----GGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEE---EEEECTTSTTCCCHHHHHHHTT
T ss_pred -----HHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEE---EEEECcCcccCCCHHHHHHHhC
Confidence 233345667789999999999987654221110000 01122233 345555543210 1111110
Q ss_pred ---cc-----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 206 ---KA-----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 206 ---~~-----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. ...+||+++.|+.++++.+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 144 LHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred chhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 01 112699999999999999887664
No 121
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.38 E-value=4.4e-13 Score=120.76 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=62.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... ...++.|+.+.....+.+.+.. ..+.+|||||..+..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSSST
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcchh
Confidence 47999999999999999999995532 3445555555544455554421 568999999985433
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
. .....++.+|++++|+|+++...
T Consensus 81 ~-------~~~~~~~~~d~~i~v~d~~~~~s 104 (194)
T 2atx_A 81 R-------LRPLSYPMTDVFLICFSVVNPAS 104 (194)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTCHHH
T ss_pred H-------HHHHhcCCCCEEEEEEECCCHHH
Confidence 2 33455788999999999977543
No 122
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.37 E-value=4e-13 Score=121.52 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=84.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.... . ..|+......+...+ ..+.+|||||....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~--~--~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT--T--IPTIGFNVETVEYKN-----------------ICFTVWDVGGQDKI 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE--E--EEETTEEEEEEEETT-----------------EEEEEEECC-----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc--c--CCcCceeEEEEEECC-----------------EEEEEEECCCCHhH
Confidence 35899999999999999999999554321 2 224444444444433 67999999998433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH----HHH-HHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK----RME-KLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~----~~~-~i~ 203 (424)
. ......++.+|++++|+|+++...+..+..... ...+.+++ ++.++.|.... .+. .+.
T Consensus 87 ~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pii---lv~NK~Dl~~~~~~~~i~~~~~ 156 (192)
T 2b6h_A 87 R-------PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL---VFANKQDMPNAMPVSELTDKLG 156 (192)
T ss_dssp C-------TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHHHTT
T ss_pred H-------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEE---EEEECCCCCCCCCHHHHHHHhC
Confidence 2 234456789999999999987654321111000 00122222 34555554321 111 111
Q ss_pred hh-cc-----CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KG-KA-----KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~-~~-----~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. .. ...+||+++.+++++++.+.+.+.
T Consensus 157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 10 11 112699999999999999987763
No 123
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.37 E-value=1.7e-13 Score=126.94 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=87.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ....|..+.+.....+.+++. ...+.||||||....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 75 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFN-MDSKSTIGVEFATRTLEIEGK---------------RIKAQIWDTAGQERY 75 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCC-C------CCSEEEEEEEETTE---------------EEEEEEECCTTTTTT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 3589999999999999999999955433 333355555555555555442 156899999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
. ......++.+|++++|+|+++...+..+..+...+ ..++++ ++.++.|.... ....+.
T Consensus 76 ~-------~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~~~~ 145 (223)
T 3cpj_B 76 R-------AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVG---LIGNKSDLAHLRAVPTEESKTFA 145 (223)
T ss_dssp T-------CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEE---EEECCGGGGGGCCSCHHHHHHHH
T ss_pred h-------hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEE---EEEECcccccccccCHHHHHHHH
Confidence 2 23445678899999999997754321111000000 112222 33455443321 111111
Q ss_pred hhcc--CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 204 KGKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~~--~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+... ...+||+++.++.++++.+.+.+.+
T Consensus 146 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQLLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 1126999999999999999988854
No 124
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1.5e-11 Score=110.68 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccce-EEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~-~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
..++|+++|.+|||||||+|+|+++.... ...| |.... ...+...+. ...+.||||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~--t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIP--TIEDTYRQVISCDKS---------------VCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSC--CCCEEEEEEEEETTE---------------EEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCC-cccC--ccccceeEEEEECCE---------------EEEEEEEeCCChHH
Confidence 45899999999999999999999644321 1112 22111 112222221 25699999999743
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
. .......++.+|++++|+|++
T Consensus 69 ~-------~~~~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 69 F-------PAMQRLSISKGHAFILVFSVT 90 (199)
T ss_dssp C-------HHHHHHHHHHCSEEEEEEETT
T ss_pred h-------HHHHHHhhccCCEEEEEEECc
Confidence 2 223445678899999999984
No 125
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.36 E-value=6.1e-12 Score=115.46 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=53.3
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+|+++.... ...+..+...........+. ....+.+|||||...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDDQG--------------NVIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBTTS--------------CEEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeCCC--------------cEEEEEEEecCCchh
Confidence 346899999999999999999999544321 11111111111111111110 014689999999743
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
... .....++.+|++++|+|++
T Consensus 74 ~~~-------~~~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 74 KAV-------LKDVYYIGASGAILFFDVT 95 (218)
T ss_dssp TSC-------CCHHHHTTCSEEEEEEETT
T ss_pred hch-------HHHHHhhcCCEEEEEEeCC
Confidence 322 3334577899999999984
No 126
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.36 E-value=1.6e-11 Score=109.88 Aligned_cols=93 Identities=15% Similarity=0.028 Sum_probs=54.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCC---CccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p---~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
..++|+++|.||||||||+|.|.+.......+.. .+...+..+.-...- .+........++.+|||||.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--------~~~~~~~~~~~~~i~Dt~G~ 84 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPL--------DIGEVKGFKTRFHLYTVPGQ 84 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCS--------SCCCSSSCEEEEEEEECCSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeeccc--------ccccccCCceEEEEEeCCCh
Confidence 3589999999999999999999854433221100 000112222110000 00000011357999999997
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.... ......++.+|++++|+|++
T Consensus 85 ~~~~-------~~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 85 VFYN-------ASRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp CSCS-------HHHHHHTTTCCEEEEEEECC
T ss_pred HHHH-------HHHHHHHhcCCEEEEEEECC
Confidence 4332 24445678999999999984
No 127
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.35 E-value=6.8e-13 Score=121.25 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=56.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++.... ..+..|+.+.....+..++. ...+.+|||||.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 87 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGK---------------QVELALWDTAGQEDYD 87 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTE---------------EEEEEEEECTTCTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCE---------------EEEEEEEECCCcHHHH
Confidence 469999999999999999999965433 22223333333233343331 2568999999975432
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
. .....++.+|++++|+|+++..
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~~~~ 110 (207)
T 2fv8_A 88 R-------LRPLSYPDTDVILMCFSVDSPD 110 (207)
T ss_dssp T-------TGGGGCTTCCEEEEEEETTCHH
T ss_pred H-------HHHhhcCCCCEEEEEEECCCHH
Confidence 2 3345678899999999997754
No 128
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.34 E-value=1.2e-13 Score=149.22 Aligned_cols=208 Identities=16% Similarity=0.165 Sum_probs=120.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC-----------Ccc---h-----------h
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD-----------PRL---H-----------V 108 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~-----------~~~---d-----------~ 108 (424)
...++|+++|.+|+|||||+|+|+|....+.+.- .||+.|..-.+.... .++ + .
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 3458999999999999999999997655455443 577766544332111 110 0 0
Q ss_pred hc-------------cccccccccCceEEEEeCCCCCCCCC----c--ccchhhhhhhhh-hccceEEEEeecCCCCcee
Q 014450 109 LS-------------GLSKSQKAVPASVEFVDIAGLVKGAS----Q--GEGLGNKFLSHI-REVDSILQVVRCFEDNDIV 168 (424)
Q Consensus 109 l~-------------~~~~~~~~~~~~i~lvDtpG~~~~~~----~--~~~~~~~~l~~i-~~aD~il~Vvda~~~~~~~ 168 (424)
+. .++.|. ..++.|+||||+..... . ...+.+.....+ ..+|++|+|+|++.+....
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~---~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~ 204 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS 204 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETT---CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSC
T ss_pred hcCCCCcccccceEEEEecCC---CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchh
Confidence 00 001111 23689999999986321 1 122333333333 5799999999998643210
Q ss_pred ---eeccccccCCchhhhhhhhhcccHHHHHHH--HHHH-H-hhc-------cCCCcchhhHHHHHHHHHHHHH---HHh
Q 014450 169 ---HVNGKVDPKSDVDVINLELVFSDLDQIEKR--MEKL-K-KGK-------AKDSQSKLKEDAEKAALEKIQQ---ALM 231 (424)
Q Consensus 169 ---~~~~~~dp~~d~~~i~~el~~~~~~~i~~~--~~~i-~-k~~-------~~~~~Sak~~~~~~~ll~~i~~---~L~ 231 (424)
.+....++. ..+++ ++++++|.+.+. ...+ . +.. ....+||+++.++++|++.+.+ .|+
T Consensus 205 d~l~ll~~L~~~-g~pvI---lVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffp 280 (772)
T 3zvr_A 205 DALKIAKEVDPQ-GQRTI---GVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL 280 (772)
T ss_dssp HHHHHHHHHCTT-CSSEE---EEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCEE---EEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhcc
Confidence 111111111 11222 345555544321 0111 1 111 1123699999999999999886 688
Q ss_pred CCCCccCCCCCHH-----HHHHHH-HHhhhhccceEE----------ecccccccc
Q 014450 232 DGKPARSVTLNDF-----ERDSIK-QLCLLTMKPIIY----------VANVAESDL 271 (424)
Q Consensus 232 ~~~~~~~~~~t~~-----e~e~ir-~~~~l~~kpi~y----------~~nv~~~~~ 271 (424)
+++++. .+++. -.++|+ +++..+.+++|| .+.+..+.+
T Consensus 281 e~P~yd--~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~ 334 (772)
T 3zvr_A 281 SHPSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEY 334 (772)
T ss_dssp HCTTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchh--hhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHh
Confidence 887763 34544 268888 788899999999 666555544
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.34 E-value=2.7e-12 Score=118.34 Aligned_cols=85 Identities=14% Similarity=0.052 Sum_probs=60.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh-cCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~-g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
...++|+++|.+|||||||+|+++ +.......+.+++|.......+... ...+.+|||||..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-----------------~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-----------------PIKFNVWDTAGQE 75 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTE-----------------EEEEEEEEECSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE-----------------EEEEEEEeCCChH
Confidence 345899999999999999999955 3334455666777766555443222 2579999999964
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
... ......++.+|++++|+|++
T Consensus 76 ~~~-------~~~~~~~~~~~~~i~v~d~~ 98 (221)
T 3gj0_A 76 KFG-------GLRDGYYIQAQCAIIMFDVT 98 (221)
T ss_dssp GTS-------CCCHHHHTTCCEEEEEEETT
T ss_pred HHh-------HHHHHHHhcCCEEEEEEECC
Confidence 322 23345577899999999984
No 130
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.33 E-value=5.1e-13 Score=118.32 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=84.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+++.... +..|+.+.....+.+++. ...+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQ---------------THLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTE---------------EEEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCE---------------EEEEEEEECCCCch--
Confidence 4799999999999999999999655432 222332333334444432 25689999999742
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccc---c----c-cCCchhhhhhhhhcccHHHH--------HHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK---V----D-PKSDVDVINLELVFSDLDQI--------EKRM 199 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~---~----d-p~~d~~~i~~el~~~~~~~i--------~~~~ 199 (424)
...++++|++++|+|+++...+..+..+ . . ...+++++ ++.++.|.. ....
T Consensus 67 ----------~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~v~~~~~ 133 (178)
T 2iwr_A 67 ----------AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALA---LVGTQDRISASSPRVVGDARA 133 (178)
T ss_dssp ----------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEE---EEEECTTCBTTBCCCSCHHHH
T ss_pred ----------hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECccccccccCcCCHHHH
Confidence 2456789999999999876543221110 0 0 00122222 334444321 0111
Q ss_pred HHH-Hhh--ccCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 200 EKL-KKG--KAKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 200 ~~i-~k~--~~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..+ ... .+...+||+++.+++++++.+.+.+.
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHH
Confidence 111 111 11123799999999999998887663
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.33 E-value=2e-12 Score=115.64 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ..+..|+.......+.+.+. ...+.+|||||....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 68 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSC---------------EEEEEEEEECCSGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCE---------------EEEEEEEECCCChhh
Confidence 4589999999999999999999955432 22222222222223333331 257899999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
. ......++.+|++++|+|+++...
T Consensus 69 ~-------~~~~~~~~~~~~~i~v~d~~~~~s 93 (184)
T 1m7b_A 69 D-------NVRPLSYPDSDAVLICFDISRPET 93 (184)
T ss_dssp T-------TTGGGGCTTCSEEEEEEETTCHHH
T ss_pred h-------hhHHhhcCCCcEEEEEEECCCHHH
Confidence 2 233345788999999999987543
No 132
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.33 E-value=8.4e-13 Score=120.07 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=58.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|++... .....|.++. .....+..++. ...+.+|||||....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~-~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~- 86 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFE-NYIADIEVDGK---------------QVELALWDTAGQEDY- 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCC-CCEEEEEETTE---------------EEEEEEECCCCSGGG-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccc-eEEEEEEECCE---------------EEEEEEEECCCchhH-
Confidence 47999999999999999999995543 2222233332 22233444331 256899999996332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
.......++.+|++++|+|+++..
T Consensus 87 ------~~~~~~~~~~~d~~i~v~d~~~~~ 110 (201)
T 2gco_A 87 ------DRLRPLSYPDTDVILMCFSIDSPD 110 (201)
T ss_dssp ------TTTGGGGCTTCSEEEEEEETTCHH
T ss_pred ------HHHHHHhcCCCCEEEEEEECCCHH
Confidence 223345678999999999997754
No 133
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=130.39 Aligned_cols=163 Identities=12% Similarity=0.109 Sum_probs=80.2
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhc------CCCccccCCCCcccc-----------------ceEEEeecC------C
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTIE-----------------PNVGIVAVP------D 103 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g------~~~~~~s~~p~tT~~-----------------~~~~~~~~~------~ 103 (424)
......|+|+|+||||||||+|+|++ ...+..+..|+++.. +..-.-..+ +
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC--------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 34578999999999999999999995 333444444544320 100000000 0
Q ss_pred CcchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhh
Q 014450 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVI 183 (424)
Q Consensus 104 ~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i 183 (424)
...+.+..+. .....+..+.|+||||+.+.. ......+|++++|+|++.......+.. .+-+...+
T Consensus 151 ~tr~~~~~~~-~~~~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~~~~~~i~~---~il~~~~i 216 (349)
T 2www_A 151 VTRTTNEAIL-LCEGAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGGDELQGIKR---GIIEMADL 216 (349)
T ss_dssp -CTTHHHHHH-HHHHTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC---------------CCSCSE
T ss_pred chHHHHHHHH-hhccCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcchhHHHhHH---HHHhcCCE
Confidence 0000000000 000123579999999985321 122568999999999975432211110 01111111
Q ss_pred hhhhhcccHHHHHH-----HHHHHHhh----cc-----CC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 184 NLELVFSDLDQIEK-----RMEKLKKG----KA-----KD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 184 ~~el~~~~~~~i~~-----~~~~i~k~----~~-----~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+++|++|.... ....+... .. .. .+||+++.++.++++.|.+.++.
T Consensus 217 ---vVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 217 ---VAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp ---EEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ---EEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 33455543321 11222110 00 11 26999999999999999888753
No 134
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.33 E-value=1.2e-12 Score=117.71 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=85.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+.+. ...+.+|||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQ---------------PVHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCE---------------EEEEEEEECCCCCcc
Confidence 358999999999999999999996542 234444444333333333331 256899999997543
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC--------CchhhhhhhhhcccHHHHHH------HHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK--------SDVDVINLELVFSDLDQIEK------RME 200 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~--------~d~~~i~~el~~~~~~~i~~------~~~ 200 (424)
.. + ...++.+|++++|+|+++...+..+..+...+ .+.+++ ++.++.|..+. ...
T Consensus 83 ~~----~----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pii---lv~nK~Dl~~~~~v~~~~~~ 151 (187)
T 3c5c_A 83 RN----C----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPAL---LLGNKLDMAQYRQVTKAEGV 151 (187)
T ss_dssp CC----T----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEE---EEEECGGGGGGCSSCHHHHH
T ss_pred hh----H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEE---EEEECcchhhcCccCHHHHH
Confidence 22 1 34678899999999998654432211110000 122222 34455554221 111
Q ss_pred HHHhhc--cCCCcch-hhHHHHHHHHHHHHHHHh
Q 014450 201 KLKKGK--AKDSQSK-LKEDAEKAALEKIQQALM 231 (424)
Q Consensus 201 ~i~k~~--~~~~~Sa-k~~~~~~~ll~~i~~~L~ 231 (424)
.+.+.. ....+|| +++.++.++++.+.+.+.
T Consensus 152 ~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 152 ALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 111111 1123699 899999999999887664
No 135
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.33 E-value=2.7e-13 Score=126.01 Aligned_cols=151 Identities=21% Similarity=0.164 Sum_probs=86.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+||+|||.+|||||||++++++ ........|....+.....+...+. ...+.||||||.-+..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~-~~f~~~~~~Tig~d~~~k~~~~~~~---------------~v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMY-DSFDNTYQATIGIDFLSKTMYLEDR---------------TIRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH-SCCC----------CEEEEEECSSC---------------EEEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHHh-CCCCCCcCCccceEEEEEEEEecce---------------EEEEEEEECCCchhhh
Confidence 47999999999999999999994 3333333343333444444444442 2678999999974332
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccC-----CchhhhhhhhhcccHHHHHHH------HHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPK-----SDVDVINLELVFSDLDQIEKR------MEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~-----~d~~~i~~el~~~~~~~i~~~------~~~i~k 204 (424)
......++.+|++++|.|.++..++..+..+.+.+ .+++++ |+.++.|..+.+ ...+.+
T Consensus 77 -------~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~pii---lVgNK~Dl~~~r~V~~~e~~~~a~ 146 (216)
T 4dkx_A 77 -------SLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIM---LVGNKTDLADKRQVSIEEGERKAK 146 (216)
T ss_dssp -------GGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEE---EEEECTTCGGGCCSCHHHHHHHHH
T ss_pred -------hHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEE---EEeeccchHhcCcccHHHHhhHHH
Confidence 23445678999999999998766533322221111 122222 334444432211 111111
Q ss_pred hcc--CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 205 GKA--KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 205 ~~~--~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
... ...+||+++.|++++++.|.+.++.
T Consensus 147 ~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 147 ELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred HhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 111 1236999999999999999888753
No 136
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.32 E-value=4.6e-13 Score=144.61 Aligned_cols=226 Identities=16% Similarity=0.182 Sum_probs=120.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc-----------cccC------CCCccccceEEEeecCCCcchhhcccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----------QAAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~-----------~~s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~ 117 (424)
...+|+|+|.+|+|||||+|+|++.... .+.+ .+++|+......+.+.+
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~-------------- 74 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG-------------- 74 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--------------
Confidence 3579999999999999999999942111 1111 24556555555555443
Q ss_pred ccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeec--cccccCCchhhhhhhhhcccHHHH
Q 014450 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN--GKVDPKSDVDVINLELVFSDLDQI 195 (424)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~--~~~dp~~d~~~i~~el~~~~~~~i 195 (424)
.++.||||||+.+.. ..+...++.||++|+|+|+++........ ..... ..++.+ +++|++|.
T Consensus 75 ---~~i~liDTPG~~df~-------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~-~~~p~i---lviNK~Dl- 139 (693)
T 2xex_A 75 ---HRVNIIDTPGHVDFT-------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT-YGVPRI---VFVNKMDK- 139 (693)
T ss_dssp ---EEEEEECCCCCSSCC-------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH-TTCCEE---EEEECTTS-
T ss_pred ---eeEEEEECcCCcchH-------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH-cCCCEE---EEEECCCc-
Confidence 779999999996543 36677888999999999996532100000 00000 000000 11222221
Q ss_pred HHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEe-c---cccccc
Q 014450 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYV-A---NVAESD 270 (424)
Q Consensus 196 ~~~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~-~---nv~~~~ 270 (424)
.......+++.+.+.+..........++.. +.+. -+..+..++..|- - +....+
T Consensus 140 -------------------~~~~~~~~~~~l~~~l~~~~~~~~ipisa~--~~~~~l~d~l~~~~~~~~~~~~~~~~~~~ 198 (693)
T 2xex_A 140 -------------------LGANFEYSVSTLHDRLQANAAPIQLPIGAE--DEFEAIIDLVEMKCFKYTNDLGTEIEEIE 198 (693)
T ss_dssp -------------------TTCCHHHHHHHHHHHHCCCEEESEEEECCG--GGCCEEEETTTTEEEECCSSSSCSCEEEC
T ss_pred -------------------cccchHHHHHHHHHHhCCCceeEEeecccC--CCcceeeeeecceeEEeccCCCceeEEec
Confidence 112244556666666632110000001110 0011 0112233444332 1 001112
Q ss_pred cCCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 271 LADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 271 ~~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
++ +...+..+.+ ..++-+.+++.+++..+.||++..++...+.+.++.++....+.|+|-
T Consensus 199 ~~----~~~~~~~e~~-----------r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~~~~~~~~~~Pv~~ 258 (693)
T 2xex_A 199 IP----EDHLDRAEEA-----------RASLIEAVAETSDELMEKYLGDEEISVSELKEAIRQATTNVEFYPVLC 258 (693)
T ss_dssp CC----GGGHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred CC----HHHHHHHHHH-----------HHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeeEEE
Confidence 22 2233333332 334555778888888999999988988888889999999999999985
No 137
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.32 E-value=6.5e-12 Score=120.51 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCC------CccccceEEEee--cCCCcchhhccccccccccCceEEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP------FCTIEPNVGIVA--VPDPRLHVLSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p------~tT~~~~~~~~~--~~~~~~d~l~~~~~~~~~~~~~i~lv 126 (424)
..++|+++|.||+|||||+|+|++....... +| ..|......... ..+. ...+.+|
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~li 70 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGV---------------QLLLTIV 70 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--C---------------CEEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccC-CCCcccccCCceEEEEEEEEEecCCe---------------EEEEEEE
Confidence 4589999999999999999999966554433 32 334333333332 2221 1479999
Q ss_pred eCCCCCCCCCcccc---h----hhhhhhhhhc-------------cceEEEEeecCCCCce---eeeccccccCCchhhh
Q 014450 127 DIAGLVKGASQGEG---L----GNKFLSHIRE-------------VDSILQVVRCFEDNDI---VHVNGKVDPKSDVDVI 183 (424)
Q Consensus 127 DtpG~~~~~~~~~~---~----~~~~l~~i~~-------------aD~il~Vvda~~~~~~---~~~~~~~dp~~d~~~i 183 (424)
||||+.+....... + ..+|...++. +|+++++++.+..... ..+...... ..+++
T Consensus 71 DTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~--~~pvi 148 (274)
T 3t5d_A 71 DTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE--KVNII 148 (274)
T ss_dssp ECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT--TSCEE
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc--cCCEE
Confidence 99999544322111 1 1222333333 7899999976542210 000000000 11222
Q ss_pred hhhhhcccHHHHH-----HHHHHHHhhc-----cCCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 184 NLELVFSDLDQIE-----KRMEKLKKGK-----AKDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 184 ~~el~~~~~~~i~-----~~~~~i~k~~-----~~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
++++++|.+. .....+.+.. +...+||+++.++.++.+.+.+.+|-
T Consensus 149 ---~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 149 ---PLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp ---EEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred ---EEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 3344444321 1111121111 11236888888888888888777653
No 138
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.32 E-value=3.9e-13 Score=123.77 Aligned_cols=151 Identities=14% Similarity=0.121 Sum_probs=77.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.. ...+..|+.+.....+.+.+. ...+.+|||||....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGK---------------PVHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTE---------------EEEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCE---------------EEEEEEEECCCchhh
Confidence 358999999999999999999995442 223333444443344444432 256999999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeec-ccccc----CCchhhhhhhhhcccHHHHHHH-----------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDP----KSDVDVINLELVFSDLDQIEKR----------- 198 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp----~~d~~~i~~el~~~~~~~i~~~----------- 198 (424)
. ......++.+|++++|+|+++...+..+. .+... ..+.+++ ++.++.|.....
T Consensus 96 ~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~ 165 (214)
T 2j1l_A 96 D-------RLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII---VVGCKTDLRKDKSLVNKLRRNGL 165 (214)
T ss_dssp ----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEE---EEEECGGGGSCHHHHHHHHHTTC
T ss_pred h-------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEE---EEEEChhhhccchhhhhhccccc
Confidence 2 23334578899999999998754322111 00000 0112222 334444432211
Q ss_pred -------HHHHHhhccC---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 199 -------MEKLKKGKAK---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 199 -------~~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
...+.+.... ..+||+++.++.++++.+.+.+.+
T Consensus 166 ~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 1111111111 136999999999999998877643
No 139
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=1.3e-12 Score=118.05 Aligned_cols=149 Identities=18% Similarity=0.121 Sum_probs=86.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ..+..|+.......+.+.+. ...+.+|||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc-
Confidence 3589999999999999999999965432 22222332222233333331 25699999999854
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.......++.+|++++|+|+++...+..+..... ...+++++ ++.++.|..+. ....+
T Consensus 89 -------~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~NK~Dl~~~~~v~~~~~~~~ 158 (196)
T 2atv_A 89 -------TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI---LVGNKADLDHSRQVSTEEGEKL 158 (196)
T ss_dssp -------CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEE---EEEECGGGGGGCCSCHHHHHHH
T ss_pred -------ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEE---EEEECcccccccccCHHHHHHH
Confidence 1244556788999999999987543211110000 00122222 33444443321 11111
Q ss_pred Hhhcc--CCCcchhhHH-HHHHHHHHHHHHHh
Q 014450 203 KKGKA--KDSQSKLKED-AEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~~~--~~~~Sak~~~-~~~~ll~~i~~~L~ 231 (424)
.+... ...+||+++. ++.++++.+.+.+.
T Consensus 159 ~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 159 ATELACAFYECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp HHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred HHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence 11111 1236999999 99999999887764
No 140
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.31 E-value=6.7e-13 Score=122.80 Aligned_cols=153 Identities=16% Similarity=0.051 Sum_probs=90.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+|||.||||||||+|++++.....++.++.++.+.....+.+++.. .++.++||+|....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~~~~ 100 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE 100 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTTTHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCCcch
Confidence 358999999999999999999996555555666666666555556555422 56889999996210
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH------HHHHH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK------RMEKL 202 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~------~~~~i 202 (424)
.........+.+|++++|+|.++...+..+..+.. ...+++++ ++.|+.|..+. ....+
T Consensus 101 ------~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~pii---lVgNK~DL~~~r~v~~~e~~~~ 171 (211)
T 2g3y_A 101 ------NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII---LVGNKSDLVRCREVSVSEGRAC 171 (211)
T ss_dssp ------HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEE---EEEECTTCGGGCCSCHHHHHHH
T ss_pred ------hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEE---EEEEChHHhcCceEeHHHHHHH
Confidence 10111233577999999999987544322111100 01123333 44555554321 00111
Q ss_pred Hhhc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 203 KKGK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 203 ~k~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.... ....+||+++.++.++++.+.+.+.
T Consensus 172 a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111 1123699999999999999887763
No 141
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.31 E-value=9.2e-13 Score=119.34 Aligned_cols=152 Identities=17% Similarity=0.092 Sum_probs=87.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|++||.||||||||+|++++.....++.++.++.+.....+.+++.. .++.++||+|....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~~~- 69 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE- 69 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCcch-
Confidence 47999999999999999999996555555666666666655656655422 56789999996321
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc------cCCchhhhhhhhhcccHHHHHH------HHHHHH
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD------PKSDVDVINLELVFSDLDQIEK------RMEKLK 203 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d------p~~d~~~i~~el~~~~~~~i~~------~~~~i~ 203 (424)
...+ .....+.+|++++|+|.++..++..+..... ...+.+++ ++.++.|..+. ....+.
T Consensus 70 --~~~~---~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~pii---lV~NK~Dl~~~r~v~~~~~~~~a 141 (192)
T 2cjw_A 70 --NEWL---HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII---LVGNKSDLVRXREVSVSEGRAXA 141 (192)
T ss_dssp ---CTT---GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEE---EEEECTTCGGGCCSCHHHHHHHH
T ss_pred --hhhH---HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEE---EEEechhhhccccccHHHHHHHH
Confidence 0111 1234577999999999977544322111100 00112222 33444443221 001111
Q ss_pred hhc--cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 204 KGK--AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 204 k~~--~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
... ....+||+++.|+.++++.+.+.+.
T Consensus 142 ~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence 111 1123799999999999999887763
No 142
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.99 E-value=1.6e-13 Score=124.91 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=86.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|+++.. ...+..|+.+.....+...+. ...+.+|||||..+.
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDY 91 (204)
Confidence 468999999999999999999994432 233334444433333333221 245779999997433
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCceeeec-cccccCC----chhhhhhhhhcccHHHHHHHH----------
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDPKS----DVDVINLELVFSDLDQIEKRM---------- 199 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp~~----d~~~i~~el~~~~~~~i~~~~---------- 199 (424)
. ......++.+|++++|+|+++...+..+. .....+. +.+++ ++.++.|..+...
T Consensus 92 ~-------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pii---lv~NK~Dl~~~~~~~~~~~~~~~ 161 (204)
T 3th5_A 92 D-------RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII---LVGTKLDLRDDKDTIEKLKEKKL 161 (204)
Confidence 2 23344578899999999998765543322 1111111 33344 5677777654310
Q ss_pred -----HHHHhhc------cCCCcchhhHHHHHHHHHHHHHH
Q 014450 200 -----EKLKKGK------AKDSQSKLKEDAEKAALEKIQQA 229 (424)
Q Consensus 200 -----~~i~k~~------~~~~~Sak~~~~~~~ll~~i~~~ 229 (424)
....... +...+||+++.+++++++.+.+.
T Consensus 162 ~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 162 TPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 0000110 11126888888888887776543
No 143
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.30 E-value=3.1e-12 Score=117.24 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=58.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++.... ..+..|+.......+.+.+. ...+.||||||....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQ---------------RIELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSS---------------EEEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCE---------------EEEEEEEeCCCcHhh
Confidence 3589999999999999999999965432 22222222222233333331 257999999997432
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCc
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~ 166 (424)
. ......++.+|++++|+|+++...
T Consensus 90 ~-------~~~~~~~~~~d~~ilv~D~~~~~s 114 (205)
T 1gwn_A 90 D-------NVRPLSYPDSDAVLICFDISRPET 114 (205)
T ss_dssp T-------TTGGGGCTTCSEEEEEEETTCHHH
T ss_pred h-------HHHHhhccCCCEEEEEEECCCHHH
Confidence 2 123345688999999999987543
No 144
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.30 E-value=6.4e-12 Score=119.74 Aligned_cols=91 Identities=20% Similarity=0.261 Sum_probs=69.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++...+.+++++++|..+....+...+ ..+.||||||+.++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-----------------FTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-----------------eeEEEEECCCCCCc
Confidence 3589999999999999999999988877889999999998888877765 57999999999766
Q ss_pred CCcccchhhhhhhhh--hccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSHI--REVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i--~~aD~il~Vvda~ 162 (424)
....+...+.+...+ ..+|++++|+|+.
T Consensus 98 ~~~~~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 98 GYVNHQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 543332222222222 3799999998764
No 145
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.2e-12 Score=129.16 Aligned_cols=146 Identities=18% Similarity=0.214 Sum_probs=87.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+|+|.+|||||||+|+|++.... ...| |+......+...+ ..+.||||||.....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 223 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKIR 223 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCE--EEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----C
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCC--Cccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhHH
Confidence 469999999999999999999955532 2233 5555555555543 679999999963322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCCceeeecccc------ccCCchhhhhhhhhcccHHHHHH-----HHHHHHh
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV------DPKSDVDVINLELVFSDLDQIEK-----RMEKLKK 204 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~------dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~k 204 (424)
......++.+|++++|+|+++...+..+.... ....+++++ ++.++.|..+. ....+..
T Consensus 224 -------~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pii---lV~NK~Dl~~~~~~~~i~~~~~~ 293 (329)
T 3o47_A 224 -------PLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL---VFANKQDLPNAMNAAEITDKLGL 293 (329)
T ss_dssp -------CSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEE---EEEECTTSTTCCCHHHHHHHHTC
T ss_pred -------HHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEE---EEEECccCCcccCHHHHHHHhch
Confidence 24455678899999999998765432111000 001122233 44555553321 1111111
Q ss_pred hc-c-----CCCcchhhHHHHHHHHHHHHHHHhC
Q 014450 205 GK-A-----KDSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 205 ~~-~-----~~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.. . ...+||+++.+++++++.|.+.+.+
T Consensus 294 ~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 294 HSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 10 0 0126999999999999999988753
No 146
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.29 E-value=9.5e-13 Score=142.13 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=121.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc-----cc------cC------CCCccccceEEEeecCCCcchhhcccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-----QA------AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~-----~~------s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~ 117 (424)
...+|+|+|.+|+|||||+|+|+..... .+ .+ ..+.|+......+...
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--------------- 75 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--------------- 75 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET---------------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC---------------
Confidence 3579999999999999999999831110 11 11 2234444444444333
Q ss_pred ccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccc-cCCchhhhhhhhhcccHHHHH
Q 014450 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD-PKSDVDVINLELVFSDLDQIE 196 (424)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~d-p~~d~~~i~~el~~~~~~~i~ 196 (424)
...+.||||||..+ +...+...++.+|++++|+|+++............ ...+++.+ ++.|++|
T Consensus 76 --~~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i---vviNKiD--- 140 (691)
T 1dar_A 76 --DHRINIIDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI---AFANKMD--- 140 (691)
T ss_dssp --TEEEEEECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE---EEEECTT---
T ss_pred --CeEEEEEECcCccc-------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE---EEEECCC---
Confidence 37799999999854 33467778899999999999965421100000000 00000000 1122221
Q ss_pred HHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEe-c--c-cccccc
Q 014450 197 KRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYV-A--N-VAESDL 271 (424)
Q Consensus 197 ~~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~-~--n-v~~~~~ 271 (424)
........+++.+.+.+... ..+..++....+.+. -+.++..++..|. - + ....++
T Consensus 141 -----------------~~~~~~~~~~~~l~~~l~~~--~~~~~~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~ 201 (691)
T 1dar_A 141 -----------------KTGADLWLVIRTMQERLGAR--PVVMQLPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPI 201 (691)
T ss_dssp -----------------STTCCHHHHHHHHHHTTCCC--EEECEEEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECC
T ss_pred -----------------cccCCHHHHHHHHHHHhCCC--ccceeccccCCCcccchhhhhcceeeEeccCCCceeEEecC
Confidence 11122445566666555321 111111000000011 1223445555553 1 0 111123
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 272 ADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
+ +.+.+...++ ..++-+.+++.+++..+.||++..++...+...++..+....++|+|.
T Consensus 202 ~----~~~~~~~~~~-----------r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~~~~~~~~Pv~~ 260 (691)
T 1dar_A 202 P----EEYLDQAREY-----------HEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKGTIDLKITPVFL 260 (691)
T ss_dssp C----GGGHHHHHHH-----------HHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred C----HHHHHHHHHH-----------HHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCcEeEEEE
Confidence 2 3344444443 344566788888889999999998988888899999999899999985
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.28 E-value=7.7e-12 Score=129.68 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=61.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc------------------------------cccCCCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA------------------------------QAANFPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~------------------------------~~s~~p~tT~~~~~~~~~~~~~ 104 (424)
..++|+++|.+|+|||||+|+|++.... .....+++|++.....+..++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 4589999999999999999999854211 111223556555555554433
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++.||||||. +.+...+...++.||++|+|+|+++
T Consensus 111 ----------------~~~~iiDTPG~-------~~f~~~~~~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 111 ----------------ANFTIVDAPGH-------RDFVPNAIMGISQADMAILCVDCST 146 (483)
T ss_dssp ----------------CEEEEECCCCC-------GGGHHHHHHHHTTCSEEEEEEECCC
T ss_pred ----------------ceEEEEECCCc-------HHHHHHHHHhhhhCCEEEEEEECCC
Confidence 67999999998 3455677788899999999999964
No 148
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.27 E-value=1e-11 Score=112.40 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=55.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEe--ecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV--AVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~--~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...++|+++|.+|||||||+|.+++..... +..+.++....+ .+.+. ....+.+|||||.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN----ETLFLESTNKIYKDDISNS--------------SFVNFQIWDFPGQ 79 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG----GGGGCCCCCSCEEEEECCT--------------TSCCEEEEECCSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc----ceeeeccccceeeeeccCC--------------CeeEEEEEECCCC
Confidence 346899999999999999999999543222 111222211111 11110 1267999999997
Q ss_pred CCCCCcccchhhhh---hhhhhccceEEEEeecCCC
Q 014450 132 VKGASQGEGLGNKF---LSHIREVDSILQVVRCFED 164 (424)
Q Consensus 132 ~~~~~~~~~~~~~~---l~~i~~aD~il~Vvda~~~ 164 (424)
..... .. ...++++|++++|+|+++.
T Consensus 80 ~~~~~-------~~~~~~~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 80 MDFFD-------PTFDYEMIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp CCTTC-------TTCCHHHHHHTCSEEEEEEETTSC
T ss_pred HHHHh-------hhhhcccccccCCEEEEEEECCCc
Confidence 44322 22 4667889999999999875
No 149
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.27 E-value=2.5e-11 Score=108.19 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=87.0
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~ 136 (424)
++|+++|.+|||||||+|+|+ +....++..|++|.++....+ ..+.+|||||+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~-~~~~~~~~~~~~t~~~~~~~~---------------------~~~~l~Dt~G~~~~~~ 59 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLT-GKKVRRGKRPGVTRKIIEIEW---------------------KNHKIIDMPGFGFMMG 59 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH-SCCCSSSSSTTCTTSCEEEEE---------------------TTEEEEECCCBSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHh-CcCCccCCCCCccceeEEEec---------------------CCEEEEECCCcccccc
Confidence 689999999999999999999 455777778888876654432 1389999999753321
Q ss_pred cc----cchh---hhhhhh-hhccceEEEEeecCCCCce-eeec------------cccccCCchhhhhhhhhcccHHHH
Q 014450 137 QG----EGLG---NKFLSH-IREVDSILQVVRCFEDNDI-VHVN------------GKVDPKSDVDVINLELVFSDLDQI 195 (424)
Q Consensus 137 ~~----~~~~---~~~l~~-i~~aD~il~Vvda~~~~~~-~~~~------------~~~dp~~d~~~i~~el~~~~~~~i 195 (424)
.. +.+. ..+... ...+++++.|+|+.....+ .... .... ..+.+++ ++.++.|..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pii---lv~nK~Dl~ 135 (190)
T 2cxx_A 60 LPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR-ELDIPTI---VAVNKLDKI 135 (190)
T ss_dssp SCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH-HTTCCEE---EEEECGGGC
T ss_pred CCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHH-hcCCceE---EEeehHhcc
Confidence 11 1111 223333 5567788888887532111 0000 0000 0111222 334555443
Q ss_pred HH---HHHHHHhhccC---------CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 196 EK---RMEKLKKGKAK---------DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 196 ~~---~~~~i~k~~~~---------~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.. ....+.+.... ..+||+++.++.++++.+.+.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 136 KNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp SCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 21 12222221111 237999999999999999888754
No 150
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.26 E-value=1.5e-12 Score=116.97 Aligned_cols=145 Identities=18% Similarity=0.128 Sum_probs=84.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|+++|.+|||||||+|+++++... ....| |.......+.+.+. ...+.+|||||...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~-~~~~~--t~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~ 79 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYV-QEESP--EGGRFKKEIVVDGQ---------------SYLLLIRDEGGPPE 79 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCC-CCCCT--TCEEEEEEEEETTE---------------EEEEEEEECSSSCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCC--CcceEEEEEEECCE---------------EEEEEEEECCCChh
Confidence 34589999999999999999999954432 21222 33333334444442 25688899999732
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc------CCchhhhhhhhhcccHHHH--------HHHH
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP------KSDVDVINLELVFSDLDQI--------EKRM 199 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp------~~d~~~i~~el~~~~~~~i--------~~~~ 199 (424)
+ . .++.+|++++|+|+++...+..+..+... ..+++++ ++.++.|.. ....
T Consensus 80 -------~----~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii---lv~nK~Dl~~~~~~~v~~~~~ 144 (184)
T 3ihw_A 80 -------L----Q-FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMV---LVGTQDAISAANPRVIDDSRA 144 (184)
T ss_dssp -------H----H-HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEE---EEEECTTCBTTBCCCSCHHHH
T ss_pred -------h----h-eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEE---EEEECcccccccccccCHHHH
Confidence 1 1 67789999999999876542221111000 0112222 334444321 0111
Q ss_pred HHHHhhcc---CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 200 EKLKKGKA---KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 200 ~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..+.+... ...+||+++.+++++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 11211111 123799999999999999887663
No 151
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.26 E-value=9e-12 Score=121.45 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=94.0
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
....++|+++|.+|||||||+|+++++.. ...++.||.+.....+...+. ...+.+|||||..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLE 214 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCCG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCE---------------EEEEEEEeCCCch
Confidence 45568999999999999999999995442 344556666655555555442 2457799999974
Q ss_pred CCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeec-ccccc----CCchhhhhhhhhcccHHHHHHH---------
Q 014450 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN-GKVDP----KSDVDVINLELVFSDLDQIEKR--------- 198 (424)
Q Consensus 133 ~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~-~~~dp----~~d~~~i~~el~~~~~~~i~~~--------- 198 (424)
... ......++.+|++++|+|+++...+..+. ..... ..+.+++ ++.++.|.....
T Consensus 215 ~~~-------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i---lv~nK~Dl~~~~~~~~~~~~~ 284 (332)
T 2wkq_A 215 DYD-------RLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII---LVGTKLDLRDDKDTIEKLKEK 284 (332)
T ss_dssp GGT-------TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEE---EEEECHHHHTCHHHHHHHHHT
T ss_pred hhh-------HHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEE---EEEEchhcccccchhhhcccc
Confidence 322 23445678999999999998755432211 00000 0123333 556777764321
Q ss_pred ---------HHHHHhhcc---CCCcchhhHHHHHHHHHHHHHHHh
Q 014450 199 ---------MEKLKKGKA---KDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 199 ---------~~~i~k~~~---~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
...+.+... ...+||+++.++.++++.+.+.+.
T Consensus 285 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 285 KLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp TCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 001111111 112699999999999998887764
No 152
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.26 E-value=1.4e-11 Score=117.75 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=68.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|+|||||+|+|++...+.+++.+++|.++....+...+ ..+.+|||||+.+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCC
Confidence 3589999999999999999999987777888999999888776665543 67999999999765
Q ss_pred CCcccchhhhhhhh--hhccceEEEEeecC
Q 014450 135 ASQGEGLGNKFLSH--IREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~~~l~~--i~~aD~il~Vvda~ 162 (424)
........+.+... .+.+|++++|+|+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 43222222222211 24799999998873
No 153
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.25 E-value=6.5e-12 Score=135.84 Aligned_cols=233 Identities=14% Similarity=0.085 Sum_probs=120.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcc-----c------cC------CCCccccceEEEeecCCCcchhhcccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-----A------AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~-----~------s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~ 117 (424)
...+|+|+|.+|+|||||+++|+...... + .+ ..+.|+......+.+.+.. ..
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~ 78 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQ 78 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------cc
Confidence 35799999999999999999997322110 1 11 1223333322223222100 00
Q ss_pred ccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeee--ccccccCCchhhhhhhhhcccHHHH
Q 014450 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV--NGKVDPKSDVDVINLELVFSDLDQI 195 (424)
Q Consensus 118 ~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~--~~~~dp~~d~~~i~~el~~~~~~~i 195 (424)
-....+.||||||..++. ..+...++.||++|+|+|+++....... ..... ...++.+ +..|++|
T Consensus 79 ~~~~~i~liDTPG~~df~-------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~-~~~ip~i---lviNKiD-- 145 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDFT-------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQAN-KYKVPRI---AFVNKMD-- 145 (704)
T ss_pred CCceeEEEEeCCCccchH-------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHH-HcCCCEE---EEEeCCC--
Confidence 112679999999986543 3566778899999999999754210000 00000 0000000 1122222
Q ss_pred HHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEec---c--cccc
Q 014450 196 EKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVA---N--VAES 269 (424)
Q Consensus 196 ~~~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~---n--v~~~ 269 (424)
........+++.+.+.|.. ...+..++....+.++ -+.+...+...|-- . ....
T Consensus 146 ------------------~~~~~~~~~~~~l~~~l~~--~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~ 205 (704)
T 2rdo_7 146 ------------------RMGANFLKVVNQIKTRLGA--NPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYE 205 (704)
T ss_pred ------------------cccccHHHHHHHHHHHhCC--CceeEEccccccccccceeehhhhhhhcccCccCCcceEEe
Confidence 1122345666667666632 2222223222111111 11122222222210 0 0000
Q ss_pred ccCCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEe
Q 014450 270 DLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 345 (424)
Q Consensus 270 ~~~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT 345 (424)
+++ ++..+.+.++ ..++-+.+++.+++..+.||++..++...+.+.++.++....++|+|-
T Consensus 206 ~~~----~~~~~~~~~~-----------~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~~~~~~~~~~Pv~~ 266 (704)
T 2rdo_7 206 DIP----ADMVELANEW-----------HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTC 266 (704)
T ss_pred cCC----HHHHHHHHHH-----------HHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCeeEEEE
Confidence 111 1222333332 234556788888888999999988888888889988888888999984
No 154
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.24 E-value=1.7e-12 Score=140.24 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=71.1
Q ss_pred ccccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEE-------Eeec-CCC------------------
Q 014450 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG-------IVAV-PDP------------------ 104 (424)
Q Consensus 51 ~~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~-------~~~~-~~~------------------ 104 (424)
+.....++|+|+|.||+|||||+|+|+|...+++++.|.|+.-.... .+.. ++.
T Consensus 64 ~l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~ 143 (695)
T 2j69_A 64 NLQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDP 143 (695)
T ss_dssp HHHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCH
T ss_pred HhccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCH
Confidence 33456799999999999999999999988888888888763111000 0000 000
Q ss_pred -cch-------------hhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 105 -RLH-------------VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 105 -~~d-------------~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
... ....++.|..+....+.||||||+.... .....+...++.||++|+|+|+++..
T Consensus 144 ~~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----~~~~~~~~~i~~aD~vL~Vvda~~~~ 214 (695)
T 2j69_A 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----ARNELSLGYVNNCHAILFVMRASQPC 214 (695)
T ss_dssp HHHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----TCHHHHTHHHHSSSEEEEEEETTSTT
T ss_pred HHHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----hHHHHHHHHHHhCCEEEEEEeCCCcc
Confidence 000 0011223333322469999999985421 12356678889999999999997653
No 155
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.6e-11 Score=130.73 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=64.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccC------------------------------CCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~------------------------------~p~tT~~~~~~~~~~~~~ 104 (424)
..++|+++|.||+|||||+|+|++.......+ .+++|++.....+..++
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 35899999999999999999999553322221 24667776666665544
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
.++.||||||. +.+...+...++.||++|+|+|++
T Consensus 245 ----------------~~~~iiDTPG~-------e~f~~~~~~~~~~aD~~llVVDa~ 279 (611)
T 3izq_1 245 ----------------ANFTIVDAPGH-------RDFVPNAIMGISQADMAILCVDCS 279 (611)
T ss_dssp ----------------CEEEEEECCSS-------SCHHHHHTTTSSCCSEEEEEEECS
T ss_pred ----------------ceEEEEECCCC-------cccHHHHHHHHhhcCceEEEEECC
Confidence 67999999998 345667788889999999999984
No 156
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.22 E-value=7.7e-12 Score=126.73 Aligned_cols=165 Identities=19% Similarity=0.194 Sum_probs=89.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcc---hhhccc--cccccccCceEEEEeC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL---HVLSGL--SKSQKAVPASVEFVDI 128 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~---d~l~~~--~~~~~~~~~~i~lvDt 128 (424)
...++|+++|.+|+|||||+|+|++........++.+|.... ...+..+. +..... ..........+.|+||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVC---ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEEC---TTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeec---cccccccceecccccccccccccccccceEEEEEC
Confidence 446899999999999999999999654433333333322110 00000000 000000 0000011157999999
Q ss_pred CCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCce----eeeccccccCCchhhhhhhhhcccHHHH-----HHHH
Q 014450 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI----VHVNGKVDPKSDVDVINLELVFSDLDQI-----EKRM 199 (424)
Q Consensus 129 pG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~----~~~~~~~dp~~d~~~i~~el~~~~~~~i-----~~~~ 199 (424)
||. +.+...+...++.+|++++|+|+++.... .+.. ........+++ +++|++|.+ +...
T Consensus 83 PGh-------~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~-~~~~~~~~~ii---vviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 83 PGH-------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGIIGVKNLI---IVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp CCC-------GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHH-HHHHHTCCCEE---EEEECGGGSCHHHHHHHH
T ss_pred CCc-------HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHH-HHHHcCCCCEE---EEEECccccchHHHHHHH
Confidence 995 45566777888999999999999875421 0000 00000000111 224444432 2222
Q ss_pred HHHHhhcc-----C---CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 200 EKLKKGKA-----K---DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 200 ~~i~k~~~-----~---~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+.+... . -.+||+++.++.+|++.+.+.++.
T Consensus 152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 22322221 1 126999999999999999988854
No 157
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.22 E-value=2.1e-11 Score=124.93 Aligned_cols=86 Identities=13% Similarity=0.098 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccC------------------------------CCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~------------------------------~p~tT~~~~~~~~~~~~~ 104 (424)
..++|+++|.+|+|||||+|+|++.......+ .+++|++.....+..++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 35899999999999999999997443222111 14566666555555544
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.||||||.. .+...+...++.||++++|+|+++.
T Consensus 95 ----------------~~~~iiDTPGh~-------~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 95 ----------------KHFTILDAPGHK-------SFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred ----------------eEEEEEECCChH-------HHHHHHHhhHhhCCEEEEEEECCCC
Confidence 679999999973 3455667778899999999999875
No 158
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.21 E-value=1.1e-11 Score=124.32 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=71.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC-----CCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~-----~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG 130 (424)
..+|+++|.||+|||||+|+|++. ..+.++++|+||++.....+ + ..+.++||||
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtPG 221 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E------------------SGATLYDTPG 221 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S------------------TTCEEEECCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C------------------CCeEEEeCCC
Confidence 468999999999999999999975 57889999999988766543 2 2389999999
Q ss_pred CCCCCCcccchhhhhhhhh---hccceEEEEeecC
Q 014450 131 LVKGASQGEGLGNKFLSHI---REVDSILQVVRCF 162 (424)
Q Consensus 131 ~~~~~~~~~~~~~~~l~~i---~~aD~il~Vvda~ 162 (424)
+.......+.+....+..+ +..|++++++++.
T Consensus 222 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp CCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTT
T ss_pred cCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCC
Confidence 9877655566667777776 8899999999984
No 159
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.18 E-value=1.5e-11 Score=127.45 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=84.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC------ccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK------AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~------~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
.++|+++|.+|+|||||+|+|++... ......+++|++.....+..++ ..+.|||||
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECC
Confidence 47999999999999999999996541 2334456777776655555543 679999999
Q ss_pred CCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCc---eeeeccccccCCchhhhhhhhhcccHHHH-----HHHHHH
Q 014450 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQI-----EKRMEK 201 (424)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i-----~~~~~~ 201 (424)
|. +.+...+...++.+|++++|+|+++... ..++.- ... ..++.+ ++.|++|.. +.....
T Consensus 82 Gh-------~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~-~~~-~~ip~I---vviNK~Dl~~~~~~~~~~~~ 149 (482)
T 1wb1_A 82 GH-------ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLI-LDH-FNIPII---VVITKSDNAGTEEIKRTEMI 149 (482)
T ss_dssp SH-------HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHH-HHH-TTCCBC---EEEECTTSSCHHHHHHHHHH
T ss_pred Ch-------HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHH-HHH-cCCCEE---EEEECCCcccchhHHHHHHH
Confidence 97 3455667778899999999999986321 111000 000 001111 223333321 111111
Q ss_pred ----HHhh-----ccCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 202 ----LKKG-----KAKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 202 ----i~k~-----~~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+... .+.-.+||+++.|+.+|++.+.+.++
T Consensus 150 l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 150 MKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 1111 11112699999999999999998775
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.16 E-value=5.3e-11 Score=119.31 Aligned_cols=136 Identities=13% Similarity=0.070 Sum_probs=85.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
+|+++|.+|+|||||+|+|+ ..+.|++.....+..++ .++.||||||..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~---- 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPK---- 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSS-----------------SEEEEEECTTTTT----
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCC-----------------eEEEEEECCChHH----
Confidence 99999999999999999998 35667776666655544 6799999999843
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCCCce---eeecc-ccccCCchhhhhhhhhcc-cHHH----HHHHHHHHHhhcc-
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDI---VHVNG-KVDPKSDVDVINLELVFS-DLDQ----IEKRMEKLKKGKA- 207 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~~~~---~~~~~-~~dp~~d~~~i~~el~~~-~~~~----i~~~~~~i~k~~~- 207 (424)
+.......++.||++++|+| ...... .+..- ....+..+ + +..| |+|. ++.....+.....
T Consensus 73 ---f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~--i---vvvNNK~Dl~~~~~~~~~~~i~~~l~~ 143 (370)
T 2elf_A 73 ---TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHG--I---IALTRSDSTHMHAIDELKAKLKVITSG 143 (370)
T ss_dssp ---CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEE--E---EEECCGGGSCHHHHHHHHHHHHHHTTT
T ss_pred ---HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeE--E---EEEEeccCCCHHHHHHHHHHHHHHHHh
Confidence 33456667799999999999 543210 00000 00001110 1 1233 3332 2221222222221
Q ss_pred -------CCC--cchhh---HHHHHHHHHHHHHHHhC
Q 014450 208 -------KDS--QSKLK---EDAEKAALEKIQQALMD 232 (424)
Q Consensus 208 -------~~~--~Sak~---~~~~~~ll~~i~~~L~~ 232 (424)
... +||++ +.+++++++.+.+.++.
T Consensus 144 ~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 144 TVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred cCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 123 79999 99999999999988863
No 161
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.16 E-value=3.6e-11 Score=125.81 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcc---------------ccC------CCCccccceEEEeecCCCcchhhcccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AAN------FPFCTIEPNVGIVAVPDPRLHVLSGLS 113 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~---------------~s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~ 113 (424)
...+|+|+|++|||||||+|+|++...+. +++ .+++|+......+...+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---------- 81 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD---------- 81 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT----------
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC----------
Confidence 34699999999999999999997322111 111 24566666666665554
Q ss_pred ccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 114 ~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
..+.||||||+.++. ..+...++.||++|+|+|+++..
T Consensus 82 -------~~i~liDTPG~~df~-------~~~~~~l~~aD~allVvDa~~g~ 119 (528)
T 3tr5_A 82 -------YLINLLDTPGHADFT-------EDTYRTLTAVDSALMVIDAAKGV 119 (528)
T ss_dssp -------EEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTCS
T ss_pred -------EEEEEEECCCchhHH-------HHHHHHHHhCCEEEEEEeCCCCC
Confidence 779999999986543 36778889999999999998743
No 162
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.16 E-value=7.3e-12 Score=112.20 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=78.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCC-CCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~-p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
.++|+|+|.+|||||||+|+|++......+.+ |..+.+.....+.+.. .......+.+|||||..+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~------------~~~~~~~~~i~Dt~G~~~- 68 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRD------------KRKRDLVLNVWDFAGREE- 68 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------------------CEEEEEEECSHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeecccc------------CCCCceEEEEEecCCCHH-
Confidence 36999999999999999999996432322222 2222222111111100 000125789999999732
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCC-ceeeecccccc----CCchhhhhhhhhcccHHHHHHHH-----HH-HH
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN-DIVHVNGKVDP----KSDVDVINLELVFSDLDQIEKRM-----EK-LK 203 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~-~~~~~~~~~dp----~~d~~~i~~el~~~~~~~i~~~~-----~~-i~ 203 (424)
+.......++.+|++++|+|.++.. ....+..+... ..+.+++ ++.++.|..+.+. .. ..
T Consensus 69 ------~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~pii---lv~nK~Dl~~~~~~~~~~~~~~~ 139 (184)
T 2zej_A 69 ------FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVI---LVGTHLDVSDEKQRKACMSKITK 139 (184)
T ss_dssp ------HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEE---EEEECGGGCCHHHHHHHHHHHHH
T ss_pred ------HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEE---EEEECCCcccchhhHHHHHHHHH
Confidence 2122234467899999999998753 22111111000 0122222 3345554332211 11 11
Q ss_pred hhc---cC------CCcchhhHH-HHHHHHHHHHHHHhC
Q 014450 204 KGK---AK------DSQSKLKED-AEKAALEKIQQALMD 232 (424)
Q Consensus 204 k~~---~~------~~~Sak~~~-~~~~ll~~i~~~L~~ 232 (424)
... .. ..+||+++. ++.++++.+.+.+++
T Consensus 140 ~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 140 ELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp HTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 111 11 126999985 899999999888864
No 163
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.14 E-value=9.1e-11 Score=123.06 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=50.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
...++|++||.||||||||+|+|++... .....| |..........+.. ..+..........+.++||||.-.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~-~~~~~~--t~g~~~~~~~~~~~-----~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETF-DPKESQ--THGLNVVTKQAPNI-----KGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGS-----GGGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCC-CCCCCC--ccceEEEEeccccc-----cceeecCCCceEEEEEEECCcHHH
Confidence 4468999999999999999999995432 211111 11111111111100 000000111236799999999533
Q ss_pred CCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 134 ~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
... .....++++|++++|+|++
T Consensus 111 ~~~-------~~~~~l~~~d~ii~V~D~s 132 (535)
T 3dpu_A 111 MHA-------SHQFFMTRSSVYMLLLDSR 132 (535)
T ss_dssp TTT-------TCHHHHHSSEEEEEEECGG
T ss_pred HHH-------HHHHHccCCcEEEEEEeCC
Confidence 221 2223466799999999984
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.14 E-value=3.3e-10 Score=114.68 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=60.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC--CC---cc-----ccC------CCCccccceEEEeecCCCcchhhccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN--GK---AQ-----AAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~--~~---~~-----~s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..++|+++|.+|+|||||+|+|++. .. +. ..+ .++.|++.....+...+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------------- 74 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--------------- 74 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS---------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC---------------
Confidence 3579999999999999999999952 00 00 000 23445554333333222
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
..+.||||||.. .+.......++.+|++++|+|+++..
T Consensus 75 --~~~~iiDtpG~~-------~f~~~~~~~~~~aD~~ilVvda~~g~ 112 (405)
T 2c78_A 75 --RHYSHVDCPGHA-------DYIKNMITGAAQMDGAILVVSAADGP 112 (405)
T ss_dssp --CEEEEEECCCSG-------GGHHHHHHHHTTCSSEEEEEETTTCC
T ss_pred --eEEEEEECCChH-------HHHHHHHHHHHHCCEEEEEEECCCCC
Confidence 679999999974 34456677789999999999997753
No 165
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.13 E-value=2.4e-11 Score=109.72 Aligned_cols=87 Identities=18% Similarity=0.146 Sum_probs=62.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+|+|.+|||||||+|+|++... .....|..+.+...+.+.+.+.. ..+.++||||..+.
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLERY 91 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCSS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcch
Confidence 358999999999999999999996543 33344666666777777776522 45678999998543
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.. ......+.+|++++|+|.++.
T Consensus 92 ~~-------~~~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 92 RA-------ITSAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp SC-------CCHHHHTTCCEEEEEEETTCH
T ss_pred hh-------hhHHHhhcCCEEEEEEECcCH
Confidence 22 223345778999999998654
No 166
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.13 E-value=6.1e-12 Score=131.55 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=92.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
++++|+++|.+|+|||||+|+|++. .......|++|.+.....+..++ ...+.||||||...+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~-~~~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe~f 65 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKT-QVAAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHAAF 65 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHH-HHHHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSCCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CcccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChHHH
Confidence 4689999999999999999999944 34445678888887766665533 145899999997443
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCCCce---eeeccccccCCchhhhhhhhhcccHHHHHH-------HHHHHHh
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI---VHVNGKVDPKSDVDVINLELVFSDLDQIEK-------RMEKLKK 204 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~---~~~~~~~dp~~d~~~i~~el~~~~~~~i~~-------~~~~i~k 204 (424)
.. .....++.+|++++|+|+++.... .++.. .. ...++++ +..|++|.... .+.....
T Consensus 66 ~~-------~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~-~~-~~~vPiI---VViNKiDl~~~~~~~v~~~l~~~~~ 133 (537)
T 3izy_P 66 SA-------MRARGTQVTDIVILVVAADDGVMKQTVESIQH-AK-DAHVPIV---LAINKCDKAEADPEKVKKELLAYDV 133 (537)
T ss_dssp TT-------SBBSSSBSBSSCEEECBSSSCCCHHHHHHHHH-HH-TTTCCEE---ECCBSGGGTTTSCCSSSSHHHHTTS
T ss_pred HH-------HHHHHHccCCEEEEEEECCCCccHHHHHHHHH-HH-HcCCcEE---EEEecccccccchHHHHHHHHhhhh
Confidence 32 444567889999999999874320 00000 00 0011112 23444443221 1111100
Q ss_pred hc-------cCCCcchhhHHHHHHHHHHHHHHHh
Q 014450 205 GK-------AKDSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 205 ~~-------~~~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
.. +...+||+++.+++++++.+...++
T Consensus 134 ~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 134 VCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred hHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 00 1123699999999999999988875
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.12 E-value=4.3e-10 Score=114.99 Aligned_cols=101 Identities=16% Similarity=0.048 Sum_probs=54.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc----------ccCCCCccccceEEEeecC---CCcchhh--ccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ----------AANFPFCTIEPNVGIVAVP---DPRLHVL--SGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~----------~s~~p~tT~~~~~~~~~~~---~~~~d~l--~~~~~~~~~~~ 120 (424)
.++|+++|.+|+|||||+|+|++..... .+..++||.+........+ .++-..+ ...+....+..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 4799999999999999999998654322 2223344322110000000 0000000 00000001123
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
..+.||||||.. .+.......++.||++++|+|+++
T Consensus 104 ~~~~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 104 RKFIIADTPGHE-------QYTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp EEEEEEECCCSG-------GGHHHHHHHHTTCSEEEEEEETTT
T ss_pred ceEEEEECCChH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 579999999963 344456667899999999999853
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.12 E-value=1.2e-10 Score=105.96 Aligned_cols=157 Identities=13% Similarity=0.208 Sum_probs=78.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC-CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~-~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
..+.+|+|+|.+|||||||+|+|+|.. .+.+++.+++|... +.+.+. ..+.++||||+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~------------------~~~~l~Dt~G~~ 83 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVA------------------DGKRLVDLPGYG 83 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEE------------------TTEEEEECCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEec------------------CCEEEEECcCCc
Confidence 446799999999999999999999665 45566777777543 233222 137899999985
Q ss_pred CCCCcc---cch---hhhhhhhhhccceEEEEeecCCCCcee--eeccccccCCchhhhhhhhhcccHHHHHH----H-H
Q 014450 133 KGASQG---EGL---GNKFLSHIREVDSILQVVRCFEDNDIV--HVNGKVDPKSDVDVINLELVFSDLDQIEK----R-M 199 (424)
Q Consensus 133 ~~~~~~---~~~---~~~~l~~i~~aD~il~Vvda~~~~~~~--~~~~~~dp~~d~~~i~~el~~~~~~~i~~----~-~ 199 (424)
...... +.+ ...+....+.+|.+++|+|++...... .+...... ..++.+ ++.+++|.+.. + .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~---~v~nK~D~~s~~~~~~~~ 159 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SNIAVL---VLLTKADKLASGARKAQL 159 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TTCCEE---EEEECGGGSCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cCCCeE---EEEecccCCCchhHHHHH
Confidence 421111 111 122333446789999999997643210 00000000 001110 12344443321 1 1
Q ss_pred HHHHhhc---cC----CCcchhhHHHHHHHHHHHHHHHhCCC
Q 014450 200 EKLKKGK---AK----DSQSKLKEDAEKAALEKIQQALMDGK 234 (424)
Q Consensus 200 ~~i~k~~---~~----~~~Sak~~~~~~~ll~~i~~~L~~~~ 234 (424)
..+.... .. .++||+++.++.++++.+.+.+++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 160 NMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp HHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 2222111 11 12689999999999999988886653
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.12 E-value=2.5e-11 Score=110.04 Aligned_cols=87 Identities=17% Similarity=0.106 Sum_probs=61.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.++|+++|.+|||||||+|+|+|.... ....|..+.++..+.+.+.+.. ..+.+|||||.....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 479999999999999999999965433 2334555566777777776522 468899999974322
Q ss_pred CcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 136 ~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
. ......+.+|++++|+|+++..
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~ 91 (199)
T 2f9l_A 69 R-------ITSAYYRGAVGALLVYDIAKHL 91 (199)
T ss_dssp C-------CCHHHHTTCSEEEEEEETTCHH
T ss_pred h-------hhHHHHhcCCEEEEEEECcCHH
Confidence 1 2223456799999999987643
No 170
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.10 E-value=2.2e-10 Score=114.11 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=84.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCcccc-----------------ceEEEeecCCCcc----
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIE-----------------PNVGIVAVPDPRL---- 106 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~tT~~-----------------~~~~~~~~~~~~~---- 106 (424)
...+.|+|+|.||||||||+|+|+ |...+.+...|.++.. +.......+....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 456899999999999999999997 2333444444444320 1111111111000
Q ss_pred -----hhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchh
Q 014450 107 -----HVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD 181 (424)
Q Consensus 107 -----d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~ 181 (424)
+.+ .........++||||||+.+ .....+..+|++++|+|+........+. ..+.+.+
T Consensus 157 ~~~t~d~i----~~~~~~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~~~~l~---~~~~~~p 219 (355)
T 3p32_A 157 TRATRETV----VLLEAAGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQLQGIK---KGVLELA 219 (355)
T ss_dssp HHHHHHHH----HHHHHTTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCTTTTCC---TTSGGGC
T ss_pred hHHHHHHH----HHHhhCCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCccHHHHH---HhHhhcC
Confidence 000 00112346799999999732 2223358899999999986544321111 1111122
Q ss_pred hhhhhhhcccHHHHHH-----HHHHHHhh----c----c-CC---CcchhhHHHHHHHHHHHHHHHhC
Q 014450 182 VINLELVFSDLDQIEK-----RMEKLKKG----K----A-KD---SQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 182 ~i~~el~~~~~~~i~~-----~~~~i~k~----~----~-~~---~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
.+ +++|++|.... ....+... . . .. .+||+++.+++++++.|.+.++.
T Consensus 220 ~i---vVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 220 DI---VVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp SE---EEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CE---EEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 22 34555543211 11122211 0 0 11 26999999999999999998865
No 171
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.09 E-value=1e-10 Score=112.90 Aligned_cols=63 Identities=33% Similarity=0.466 Sum_probs=40.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~ 133 (424)
....+|+++|.||||||||+|+|+|...+.+++.|++|++... +..+ ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEeC------------------CCEEEEECcCcCC
Confidence 4568999999999999999999998888999999999988752 2221 3589999999986
Q ss_pred CCC
Q 014450 134 GAS 136 (424)
Q Consensus 134 ~~~ 136 (424)
+..
T Consensus 178 ~~~ 180 (282)
T 1puj_A 178 PKF 180 (282)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.07 E-value=7.4e-12 Score=132.85 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=42.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccC------------------------------CCCccccceEEEeecCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~------------------------------~p~tT~~~~~~~~~~~~~ 104 (424)
..++|+++|.+|+|||||+|+|++...+..++ .+++|++.....+..++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~- 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK- 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC-
Confidence 35789999999999999999997432222211 34566665555554433
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.++.||||||..++ .......++.||++|+|||+++.
T Consensus 255 ----------------~~i~iiDTPGh~~f-------~~~~~~~~~~aD~alLVVDa~~g 291 (592)
T 3mca_A 255 ----------------KIYEIGDAPGHRDF-------ISGMIAGASSADFAVLVVDSSQN 291 (592)
T ss_dssp --------------------CCEEESSSEE-------EEECCC-------CCSEEEEEEC
T ss_pred ----------------eEEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCC
Confidence 56999999998533 33456667889999999999863
No 173
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=1.9e-10 Score=115.23 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=62.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC------CccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~------~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtp 129 (424)
..+|+++|.||+|||||+|+|++.. .+.++++|+||++.+...+ + ..+.++|||
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtP 219 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D------------------EESSLYDTP 219 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S------------------SSCEEEECC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c------------------CCeEEEeCC
Confidence 4689999999999999999999642 5568999999988776543 2 238999999
Q ss_pred CCCCCCCcccchhhhhhhh---hhccceEEEEeecC
Q 014450 130 GLVKGASQGEGLGNKFLSH---IREVDSILQVVRCF 162 (424)
Q Consensus 130 G~~~~~~~~~~~~~~~l~~---i~~aD~il~Vvda~ 162 (424)
|+.......+.+....+.. .+..+.++++++..
T Consensus 220 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 255 (368)
T 3h2y_A 220 GIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEE 255 (368)
T ss_dssp CBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTT
T ss_pred CcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCC
Confidence 9987654444555555544 46789999999873
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.05 E-value=2.2e-10 Score=116.23 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=91.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcc--ccCCCCccccceEEEeecCCC--cchhhcccccc---ccc-cCceEEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDP--RLHVLSGLSKS---QKA-VPASVEFV 126 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~--~s~~p~tT~~~~~~~~~~~~~--~~d~l~~~~~~---~~~-~~~~i~lv 126 (424)
..++|+++|.+|+|||||+|+|+|..... ....++.|++.......+... ...+......+ ... ....+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 35799999999999999999999643222 222356677654443322100 00000000000 000 01569999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC-c---eeeeccccccCCchhhhhhhhhcccHHHHH-----H
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-D---IVHVNGKVDPKSDVDVINLELVFSDLDQIE-----K 197 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~-~---~~~~~~~~dp~~d~~~i~~el~~~~~~~i~-----~ 197 (424)
||||. +.+...+...+..+|++++|+|+++.. . ..++.-. ..+...+++ ++.|++|... .
T Consensus 89 DtPGh-------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~~~~~ii---vviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 89 DAPGH-------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QIIGQKNII---IAQNKIELVDKEKALE 157 (410)
T ss_dssp ECSSH-------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHHTCCCEE---EEEECGGGSCHHHHHH
T ss_pred ECCCh-------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHcCCCcEE---EEEECccCCCHHHHHH
Confidence 99996 345556677788999999999998642 1 1111000 000000011 2244444322 1
Q ss_pred HHHHHHhhccC--------CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 198 RMEKLKKGKAK--------DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 198 ~~~~i~k~~~~--------~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
..+.+.+.... ..+||+++.++.+|++.+.+.++.
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 22222222211 126999999999999999988763
No 175
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.05 E-value=2.2e-10 Score=113.54 Aligned_cols=163 Identities=20% Similarity=0.166 Sum_probs=82.2
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCccccc--eEE---------------EeecCC-----C
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIEP--NVG---------------IVAVPD-----P 104 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~tT~~~--~~~---------------~~~~~~-----~ 104 (424)
......|+++|+||+|||||+|+|+ |...+.++..|++|... ..+ ....+. .
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 3456899999999999999999997 34555666667665421 000 000000 0
Q ss_pred cchhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhh
Q 014450 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVIN 184 (424)
Q Consensus 105 ~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~ 184 (424)
....+.+......+.+.++.|+||||+.+... ...+.||++++|+|++....+..+... ..+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~----------~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~~~p~i- 198 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET----------EVARMVDCFISLQIAGGGDDLQGIKKG---LMEVADL- 198 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH----------HHHTTCSEEEEEECC------CCCCHH---HHHHCSE-
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHH----------HHHHhCCEEEEEEeCCccHHHHHHHHh---hhcccCE-
Confidence 00000000000012346799999999853211 125889999999999654321111000 0011111
Q ss_pred hhhhcccHHHHHH-----HHHHHHh---hcc------C---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 185 LELVFSDLDQIEK-----RMEKLKK---GKA------K---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 185 ~el~~~~~~~i~~-----~~~~i~k---~~~------~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
+++|++|.... ....+.. ... . -.+||+++.+++++++.+.+.++
T Consensus 199 --vv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 199 --IVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp --EEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred --EEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 33455543221 1112211 101 1 12699999999999999888764
No 176
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.04 E-value=4.3e-10 Score=102.68 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=56.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
..++|+++|.+|||||||+|+|++... ...++.++ .....+.+++.. ...+.+|||||..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~--~~~~~~~~~~~~--------------~~~~~i~Dt~G~~-- 65 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSIT--DSSAIYKVNNNR--------------GNSLTLIDLPGHE-- 65 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCS--CEEEEEECSSTT--------------CCEEEEEECCCCH--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcc--eeeEEEEecCCC--------------ccEEEEEECCCCh--
Confidence 358999999999999999999996552 33444333 333335554311 2679999999973
Q ss_pred CCcccchhh-hhhhhhhccceEEEEeecC
Q 014450 135 ASQGEGLGN-KFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 135 ~~~~~~~~~-~~l~~i~~aD~il~Vvda~ 162 (424)
.+.. .....++.+|++++|+|++
T Consensus 66 -----~~~~~~~~~~~~~~~~~i~v~d~~ 89 (214)
T 2fh5_B 66 -----SLRFQLLDRFKSSARAVVFVVDSA 89 (214)
T ss_dssp -----HHHHHHHHHHGGGEEEEEEEEETT
T ss_pred -----hHHHHHHHHHHhhCCEEEEEEECC
Confidence 2222 2233478999999999985
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.03 E-value=3.9e-09 Score=113.43 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=38.4
Q ss_pred HhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 300 QVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 300 ~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
++-+.+++.+++..+.||++..++...+...++..+....+++||..
T Consensus 207 ~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~~~~~pv~~~ 253 (665)
T 2dy1_A 207 EVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRRGLLYPVALA 253 (665)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred HHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHhCCeeEEEEe
Confidence 34456778888889999999888888888888888888888998854
No 178
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.03 E-value=6.2e-10 Score=112.49 Aligned_cols=85 Identities=18% Similarity=0.168 Sum_probs=57.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC----cc---c--------cCCCCccccceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK----AQ---A--------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~----~~---~--------s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
.++|+++|.+|+|||||+|+|++... +. . ....+.|++.....+... .
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~-----------------~ 65 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA-----------------A 65 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECS-----------------S
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccC-----------------C
Confidence 47999999999999999999995310 00 0 001233444322222222 2
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..+.||||||.. .+.......++.||++++|+|+++.
T Consensus 66 ~~~~iiDtpG~~-------~f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 66 RHYAHTDCPGHA-------DYVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp CEEEEEECSSHH-------HHHHHHHHTSSCCSEEEEEEETTTC
T ss_pred eEEEEEECCChH-------HHHHHHHhhHhhCCEEEEEEECCCC
Confidence 679999999973 3444566778899999999999874
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.02 E-value=5e-10 Score=117.79 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=65.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc--cccCCCCccccceEEEeecC------CCc--------chhhc--------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVP------DPR--------LHVLS-------- 110 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~--~~s~~p~tT~~~~~~~~~~~------~~~--------~d~l~-------- 110 (424)
..++|+|+|.+|||||||+|+|+|...+ .+++.|+||+. .+...-. +.. +..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 4589999999999999999999977665 68888888652 2222111 000 00000
Q ss_pred ---cccccccccCceEEEEeCCCCCCCCCc--ccc--hhhhhhhhhhccceEEEEeecCC
Q 014450 111 ---GLSKSQKAVPASVEFVDIAGLVKGASQ--GEG--LGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 111 ---~~~~~~~~~~~~i~lvDtpG~~~~~~~--~~~--~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.+..|.... .++.||||||+..+... ... +.......++.||++++|+|+++
T Consensus 142 ~~~~~~~~~~ll-~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 142 RFMCAQLPNQVL-ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp TEEEEECCCHHH-HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred cceEEecccccc-CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 000111100 36999999999753321 222 23455667889999999999976
No 180
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.02 E-value=6.9e-10 Score=110.32 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~ 82 (424)
..++|++||.||||||||+|+|+|....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3579999999999999999999976654
No 181
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.02 E-value=8.2e-11 Score=111.64 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.1
Q ss_pred cCCcEEEEEecC---------CCCchHHHHHhhcC
Q 014450 54 SMSLRAGIVGLP---------NVGKSTLFNAVVEN 79 (424)
Q Consensus 54 ~~~~~I~ivG~p---------n~GKSTL~NaL~g~ 79 (424)
...++|+++|.| |||||||+|+|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 445899999999 99999999999953
No 182
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=3.1e-10 Score=101.66 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=52.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCcc--ccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~--~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...++|+++|.+|||||||+|+|++..... ++..|.+|.+. . ...+.+|||||.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-----------------GSGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C-----------------CTTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c-----------------CCeEEEEECCCC
Confidence 456899999999999999999999654321 12223332211 1 256899999998
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..... .+...+...+..+|++++|+|++
T Consensus 102 ~~~~~---~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRY---KLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSC---CHHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHH---HHHHHHHhhcccCCEEEEEEECC
Confidence 65432 12223344456699999999984
No 183
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.01 E-value=1.7e-10 Score=122.07 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=82.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcccc--------C------CCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--------~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
..+|+|+|++|+|||||+++|++....... + ..+.|+......+.+.. ......
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~------------~dg~~~ 73 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA------------KDGNTY 73 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC------------TTSCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc------------CCCCeE
Confidence 468999999999999999999842211110 0 12233333222222210 000125
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-CCchhhhhhhhhcccHHHHH----
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-KSDVDVINLELVFSDLDQIE---- 196 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-~~d~~~i~~el~~~~~~~i~---- 196 (424)
.+.||||||..+ +...+...++.||++++|+|+++............. ..+++.+ +..|++|...
T Consensus 74 ~inliDTPGh~d-------F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiI---vviNKiDl~~a~~~ 143 (600)
T 2ywe_A 74 KLHLIDTPGHVD-------FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVII---PVINKIDLPSADVD 143 (600)
T ss_dssp EEEEECCCCSGG-------GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEE---EEEECTTSTTCCHH
T ss_pred EEEEEECCCcHh-------HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEE---EEEeccCccccCHH
Confidence 789999999854 334566678999999999999875421000000000 0111111 2234443321
Q ss_pred HHHHHHHhhccC-----CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 197 KRMEKLKKGKAK-----DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 197 ~~~~~i~k~~~~-----~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+....+...... ..+||+++.|+.++++.+.+.+|.
T Consensus 144 ~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 144 RVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 112223222221 126999999999999999999974
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.00 E-value=1.5e-09 Score=108.14 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=63.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhcc-----------------------
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----------------------- 111 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~----------------------- 111 (424)
..++|++||.+|||||||+|+|+|......+ ...+|+.|..-..............
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~-~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRG-SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCC-SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCC-CCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3469999999999999999999965443332 2345555443332111000000000
Q ss_pred --------ccccc-------cccCceEEEEeCCCCCCCCC------cccchhhhhhhhhhccceEEEEeecCCC
Q 014450 112 --------LSKSQ-------KAVPASVEFVDIAGLVKGAS------QGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 112 --------~~~~~-------~~~~~~i~lvDtpG~~~~~~------~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+.+. ......+.||||||+..... ....+...+...++++|++++|+|+...
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 00000 00123689999999976532 1223345667789999999999987543
No 185
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.98 E-value=1.8e-09 Score=109.40 Aligned_cols=103 Identities=19% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCcc--ccCCCCccccceEEEeecCC--Ccchhhcccccc---ccc-cCceEEEE
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPD--PRLHVLSGLSKS---QKA-VPASVEFV 126 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~--~s~~p~tT~~~~~~~~~~~~--~~~d~l~~~~~~---~~~-~~~~i~lv 126 (424)
..++|+++|.+|+|||||+|+|+|..... ....++.|++.......... ....+......+ ... ....+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 35899999999999999999999643322 22235567665433322210 000000000000 000 01569999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
||||. +.+...+...+..+|++++|+|+++.
T Consensus 87 DtPGh-------~~f~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 87 DSPGH-------ETLMATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp ECSSH-------HHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred ECCCH-------HHHHHHHHHhHhhCCEEEEEEECCCC
Confidence 99996 34455666777889999999999864
No 186
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.97 E-value=7.9e-11 Score=127.58 Aligned_cols=234 Identities=17% Similarity=0.113 Sum_probs=124.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc-----ccc------C------CCCccccceEEEeecCCCcchhhccccccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~-----~~s------~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~ 118 (424)
..+|+|||+..+|||||..+|+-.... .+. + .-+.|+....-.+.+.+.+ .+.
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~----------~~~ 82 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSR----------GQY 82 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTT----------SCS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCc----------CCC
Confidence 468999999999999999999721110 000 0 0012222222222221100 111
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHH-
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEK- 197 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~- 197 (424)
....|.|+||||.+++.. ++.+.++-||.+|+||||.+. + ..+++.++..+....-
T Consensus 83 ~~~~iNlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDaveG------------V----~~qT~~v~~~a~~~~lp 139 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTSG------------V----EPQSETVWRQANKYGVP 139 (709)
T ss_dssp CCEEEEEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTTC------------S----CHHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCCC------------C----chhHHHHHHHHHHcCCC
Confidence 246799999999987765 788889999999999999543 2 1222222221110000
Q ss_pred HHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHH-HHhhhhccceEEecccc-----cccc
Q 014450 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSVTLNDFERDSIK-QLCLLTMKPIIYVANVA-----ESDL 271 (424)
Q Consensus 198 ~~~~i~k~~~~~~~Sak~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir-~~~~l~~kpi~y~~nv~-----~~~~ 271 (424)
++.+++|+ | +.+.+...+++.+.+.| +....+.+++....+.+. .+++...+.+.|..+.. ..++
T Consensus 140 ~i~~iNKi----D---r~~a~~~~~~~ei~~~l--~~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~ 210 (709)
T 4fn5_A 140 RIVYVNKM----D---RQGANFLRVVEQIKKRL--GHTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEI 210 (709)
T ss_dssp EEEEEECS----S---STTCCHHHHHHHHHHHH--CSCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCC
T ss_pred eEEEEccc----c---ccCccHHHHHHHhhhhc--ccceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccc
Confidence 00112222 2 23344566777777777 322222222111000111 12233444444432111 1111
Q ss_pred CCCCCCcchHHHHHHHhhcCCcEEEecHHhHHHHcCCCHHHHHHHHHHcCCCCchhHHHHHHHHhhcCcEEEEec
Q 014450 272 ADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 346 (424)
Q Consensus 272 ~~~~~~~~~~~i~~~~~~~~~~~v~~sa~~e~~l~~l~~e~~~~~l~~~gl~~~~l~~li~~~~~~L~li~~fT~ 346 (424)
+ ....+....+ ...+-+.+++.+++..+.|+++..++...+...++.......+.|+|-.
T Consensus 211 ~----~~~~~~~~~~-----------~~~~~e~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~pv~~g 270 (709)
T 4fn5_A 211 P----AELKDLAEEW-----------RSSMVEAAAEANEELMNKYLEEGELSEAEIKEGLRLRTLACEIVPAVCG 270 (709)
T ss_dssp C----HHHHHHHHHH-----------HHHHHHHHHTSSHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred c----HHHHHHHHHH-----------HHHHHHHHHhccHHHHHHHHhcCCccHHHHHHHHHHhhhhceeeeeeee
Confidence 1 1222223332 3345566788888889999999999888888888888888899998853
No 187
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.96 E-value=1.8e-09 Score=114.34 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=80.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcccc--------C------CCCccccceEEEeecCCCcchhhccccccccccCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s--------~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~ 121 (424)
..+|+|+|.+|+|||||+++|+........ + ..+.|+......+.+.+ ......
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~------------~~g~~~ 71 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKA------------SDGETY 71 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEEC------------TTSCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEec------------CCCCeE
Confidence 468999999999999999999842221111 0 12334333333332211 000125
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeecccccc-CCchhhhhhhhhcccHHHHH----
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP-KSDVDVINLELVFSDLDQIE---- 196 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp-~~d~~~i~~el~~~~~~~i~---- 196 (424)
.+.||||||..+ +.......++.||++++|+|+++............. ..+++.+ ++.|++|...
T Consensus 72 ~l~liDTPGh~d-------F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiI---vViNKiDl~~a~~~ 141 (599)
T 3cb4_D 72 QLNFIDTPGHVD-------FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVV---PVLNKIDLPAADPE 141 (599)
T ss_dssp EEEEEECCCCGG-------GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEE---EEEECTTSTTCCHH
T ss_pred EEEEEECCCchH-------HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE---EeeeccCcccccHH
Confidence 799999999843 344666778999999999999875321000000000 0011111 2234443321
Q ss_pred HHHHHHHhhccC-----CCcchhhHHHHHHHHHHHHHHHhC
Q 014450 197 KRMEKLKKGKAK-----DSQSKLKEDAEKAALEKIQQALMD 232 (424)
Q Consensus 197 ~~~~~i~k~~~~-----~~~Sak~~~~~~~ll~~i~~~L~~ 232 (424)
+....+...... ..+||+++.++.++++.+.+.+|.
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 112222222221 126999999999999999999874
No 188
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.91 E-value=1.6e-09 Score=99.19 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=51.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCccc--cCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQA--ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~--s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~ 131 (424)
...++|+++|.+|||||||+|+|++...... +..|.++.+. ....+.+|||||.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------------------DGSGVTLVDFPGH 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------------------------GGSSCEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------------------------eCceEEEEECCCc
Confidence 4468999999999999999999996543211 1222222111 1256999999998
Q ss_pred CCCCCcccchhhhhh-hhhhccceEEEEeecC
Q 014450 132 VKGASQGEGLGNKFL-SHIREVDSILQVVRCF 162 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l-~~i~~aD~il~Vvda~ 162 (424)
.... .....++ ..+..+|++++|+|++
T Consensus 66 ~~~~----~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 66 VKLR----YKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp GGGT----HHHHHHHHHHGGGEEEEEEEEETT
T ss_pred HHHH----HHHHHHHHhccccCCEEEEEEECC
Confidence 4322 1112222 2233489999999986
No 189
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.87 E-value=1.1e-09 Score=112.64 Aligned_cols=84 Identities=14% Similarity=0.146 Sum_probs=59.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc------------------------cccC------CCCccccceEEEeecCCCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA------------------------QAAN------FPFCTIEPNVGIVAVPDPR 105 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~------------------------~~s~------~p~tT~~~~~~~~~~~~~~ 105 (424)
.++|+++|.+|+|||||+|+|++.... .+.+ ..+.|++.....+..++
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 479999999999999999999853110 0111 13456555544444333
Q ss_pred chhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 106 ~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++.||||||.. .+.......++.||++++|+|+++
T Consensus 85 ---------------~~~~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 85 ---------------YQVTVIDAPGHR-------DFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp ---------------EEEEEEECCCCT-------THHHHHHHSSSCCSEEEEEEECSH
T ss_pred ---------------ceEEEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCCc
Confidence 679999999963 345566777899999999999964
No 190
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.85 E-value=5.9e-09 Score=103.08 Aligned_cols=160 Identities=18% Similarity=0.146 Sum_probs=82.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCccccceEEEeecCCCcchhhcc---cc---cc------
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG---LS---KS------ 115 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~---~~---~~------ 115 (424)
..+..|+|+|+||||||||+|+|+ ++.....+..|+++... +.+.-...++..+.+ .+ .|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~--~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~ 130 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTG--GSILGDKTRMARLAIDRNAFIRPSPSSGTLG 130 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSC--CCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccc--cchHHHhhhheeeccCcccccccCccccccc
Confidence 456789999999999999999998 34555555555444310 000000000000000 00 00
Q ss_pred ------------ccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhh
Q 014450 116 ------------QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVI 183 (424)
Q Consensus 116 ------------~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i 183 (424)
....+.+++|+||||+.+.. ......+|++++|+|++.......+.. .+..+
T Consensus 131 G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~----------~~v~~~~d~vl~v~d~~~~~~~~~i~~------~i~~~ 194 (337)
T 2qm8_A 131 GVAAKTRETMLLCEAAGFDVILVETVGVGQSE----------TAVADLTDFFLVLMLPGAGDELQGIKK------GIFEL 194 (337)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH----------HHHHTTSSEEEEEECSCC------CCT------THHHH
T ss_pred chHHHHHHHHHHHhcCCCCEEEEECCCCCcch----------hhHHhhCCEEEEEEcCCCcccHHHHHH------HHhcc
Confidence 01124679999999996421 112368999999999864322111100 00001
Q ss_pred hhhhhcccHHHH------HHHHHHHHh---hcc------CCC---cchhhHHHHHHHHHHHHHHHh
Q 014450 184 NLELVFSDLDQI------EKRMEKLKK---GKA------KDS---QSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 184 ~~el~~~~~~~i------~~~~~~i~k---~~~------~~~---~Sak~~~~~~~ll~~i~~~L~ 231 (424)
..-+++|++|.. ......+.. ... ..+ +||+++.+++++++.|.+.++
T Consensus 195 ~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 195 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 111234444421 111222221 111 112 699999999999999988775
No 191
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.85 E-value=4.6e-09 Score=111.30 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=55.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCC-CccccceEEEeecCCCcchhhcc-cccc--ccccCceEEEEeCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSG-LSKS--QKAVPASVEFVDIAGL 131 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p-~tT~~~~~~~~~~~~~~~d~l~~-~~~~--~~~~~~~i~lvDtpG~ 131 (424)
.++|+|+|++|+|||||+|+|++.... ...| +.|.+.....++... ...... .... .......+.||||||.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDV--IEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHH--HHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeech--hhhhccccccccccccccCCEEEEECCCc
Confidence 579999999999999999999954221 1112 333332222221110 000000 0000 0011235999999998
Q ss_pred CCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 132 ~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
.++.. .....++.||++++|+|+++
T Consensus 81 e~F~~-------~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 81 EAFTT-------LRKRGGALADLAILIVDINE 105 (594)
T ss_dssp SCCTT-------SBCSSSBSCSEEEEEEETTT
T ss_pred HHHHH-------HHHHHHhhCCEEEEEEECCC
Confidence 66543 22345678999999999987
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.84 E-value=1.8e-09 Score=115.62 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchh----------hccccccccccCceEEEE
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV----------LSGLSKSQKAVPASVEFV 126 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~----------l~~~~~~~~~~~~~i~lv 126 (424)
.+|||+|+..+|||||..+|+-..... ...|.+.-++..+|+ +.....+..|.+..|.|+
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i----------~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlI 72 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAI----------TELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNII 72 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCC----------SSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCC----------ccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEE
Confidence 479999999999999999997211110 001111111111221 111223334556789999
Q ss_pred eCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 127 DtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
||||.+++.. .+.+.++.+|.+++||||.+
T Consensus 73 DTPGH~DF~~-------Ev~raL~~~DgavlVVDa~~ 102 (638)
T 3j25_A 73 DTPGHMDFLA-------EVYRSLSVLDGAILLISAKD 102 (638)
T ss_dssp ECCCSSSTHH-------HHHHHHTTCSEEECCEESSC
T ss_pred ECCCcHHHHH-------HHHHHHHHhCEEEEEEeCCC
Confidence 9999977654 77888999999999999954
No 193
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.84 E-value=5.1e-09 Score=109.57 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc---------------ccC------CCCccccceEEEeecCCCcchhhccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~---------------~s~------~p~tT~~~~~~~~~~~~~~~d~l~~~~~ 114 (424)
..+|+|+|.+|+|||||+|+|++..... +.+ ..+.|+......+...
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~------------ 80 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH------------ 80 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC------------
Confidence 4799999999999999999999532211 000 1122222222222222
Q ss_pred cccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
...+.||||||..++. ..+...++.+|++|+|+|+++.
T Consensus 81 -----~~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 81 -----DCLVNLLDTPGHEDFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp -----TEEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred -----CeEEEEEECCCChhHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 3679999999985543 3566778999999999999764
No 194
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.83 E-value=1.3e-09 Score=113.07 Aligned_cols=85 Identities=18% Similarity=0.148 Sum_probs=61.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~ 134 (424)
.+++|+++|++|+|||||+|+|++. ....+..+++|.+.....+..++ ..+.||||||...+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~-~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRST-KVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHH-HHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC-CCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHH
Confidence 4679999999999999999999943 33334446667665444343332 46899999998554
Q ss_pred CCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 135 ASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 135 ~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.. .....++.+|++++|+|+.+.
T Consensus 65 ~~-------~~~~~~~~aD~aILVVda~~g 87 (501)
T 1zo1_I 65 TS-------MRARGAQATDIVVLVVAADDG 87 (501)
T ss_dssp TT-------SBCSSSBSCSSEEEEEETTTB
T ss_pred HH-------HHHHHHhhCCEEEEEeecccC
Confidence 33 334557889999999999763
No 195
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.82 E-value=8.7e-09 Score=115.00 Aligned_cols=86 Identities=19% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCC----cc-----------ccCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGK----AQ-----------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~----~~-----------~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
..++|+++|.+|+|||||+|+|++... +. .....+.|++.....+...
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----------------- 357 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----------------- 357 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-----------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-----------------
Confidence 348999999999999999999995310 00 0011233333222112211
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
...+.||||||.. .+.......++.+|++|+|+|+.+.
T Consensus 358 ~~kI~IIDTPGHe-------dF~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 358 TRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp SCEEEEEECCCHH-------HHHHHHHHTSCCCSEEEEEEETTTC
T ss_pred CEEEEEEECCChH-------HHHHHHHHHHhhCCEEEEEEcCCcc
Confidence 2679999999973 3445566778899999999999874
No 196
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=5.4e-09 Score=110.28 Aligned_cols=69 Identities=23% Similarity=0.216 Sum_probs=48.7
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~ 132 (424)
......|+|+|.||||||||+|+|+|...+. +.+++|++.+.|.+.+..+ .|. ..+..+.|+||||+.
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~---------~~~-~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVP---------HPK-KPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEE---------CSS-STTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecc---------ccc-CCCceEEEecCCCcC
Confidence 3445789999999999999999999765432 6778887777777532100 000 013579999999997
Q ss_pred C
Q 014450 133 K 133 (424)
Q Consensus 133 ~ 133 (424)
.
T Consensus 103 ~ 103 (592)
T 1f5n_A 103 D 103 (592)
T ss_dssp C
T ss_pred c
Confidence 4
No 197
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=2.2e-09 Score=102.43 Aligned_cols=59 Identities=27% Similarity=0.335 Sum_probs=39.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~ 135 (424)
.+|+++|.||+|||||+|+|+|...+.+++.|++|+....- ..+ ..+.++||||+..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~~------------------~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SLE------------------NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--ECT------------------TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--EeC------------------CCEEEEECCCcccCc
Confidence 69999999999999999999988778899999999876422 221 348999999998654
No 198
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.80 E-value=3e-09 Score=108.68 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccc------------------------c------CCCCccccceEEEeecCCCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQA------------------------A------NFPFCTIEPNVGIVAVPDPR 105 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~------------------------s------~~p~tT~~~~~~~~~~~~~~ 105 (424)
.++|+++|.+|+|||||+|+|++...... . ..+++|++.....+..++
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-- 83 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-- 83 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC--
Confidence 47999999999999999999984311100 0 134566655544444333
Q ss_pred chhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 106 ~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
..+.||||||..+ +.......++.+|++++|+|+++
T Consensus 84 ---------------~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 84 ---------------YFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp ---------------CEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST
T ss_pred ---------------eEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC
Confidence 6799999999743 44456777899999999999965
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.74 E-value=1.1e-08 Score=96.33 Aligned_cols=106 Identities=12% Similarity=0.032 Sum_probs=58.9
Q ss_pred CcEEEEEecCCCCchHHHHHhh-----cCCCccccCCCCccccceEEEeecCC-Ccchh-h-------------------
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV-----ENGKAQAANFPFCTIEPNVGIVAVPD-PRLHV-L------------------- 109 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~-----g~~~~~~s~~p~tT~~~~~~~~~~~~-~~~d~-l------------------- 109 (424)
...++++|++|||||||++.|+ |...+.+...|+.+..+........+ ...+. +
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4678899999999999999998 66766666556543211000000000 00000 0
Q ss_pred -----ccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 110 -----SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 110 -----~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
......-+ ....++|+||||....... ..++..+...+.+ +++++|+|++..
T Consensus 94 ~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~~ 150 (262)
T 1yrb_A 94 KFNEYLNKILRLE-KENDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEIL 150 (262)
T ss_dssp THHHHHHHHHHHH-HHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGGC
T ss_pred hHHHHHHHHHHHh-hcCCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhhh
Confidence 00000000 1246999999998543211 1123344456677 999999998643
No 200
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.74 E-value=1.3e-08 Score=78.79 Aligned_cols=60 Identities=28% Similarity=0.286 Sum_probs=51.2
Q ss_pred cEEEEecCCCCcceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014450 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 419 (424)
Q Consensus 340 li~~fT~g~~e~~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 419 (424)
-+.+|| |+. +...+++|+|+.|+|..||+++.+.++.|+|- | ++++.+|.+++||+|+
T Consensus 7 ~i~v~t--P~G-~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-----------------G--~~v~L~~~L~~gd~Ve 64 (78)
T 3hvz_A 7 EVFVFT--PKG-DVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-----------------G--RIVPIDYKVKTGEIID 64 (78)
T ss_dssp EEEEEC--TTS-CEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-----------------T--EEECTTCBCCTTCBEE
T ss_pred eEEEEC--CCC-CEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-----------------C--EEcCCCcccCCCCEEE
Confidence 367777 332 66789999999999999999999999999973 4 3699999999999999
Q ss_pred EE
Q 014450 420 FR 421 (424)
Q Consensus 420 ~~ 421 (424)
|-
T Consensus 65 Ii 66 (78)
T 3hvz_A 65 VL 66 (78)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 201
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=8.6e-09 Score=102.83 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=25.1
Q ss_pred cccCCcEEEEEecCCCCchHHHHHhhcCCCc
Q 014450 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (424)
Q Consensus 52 ~~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~ 82 (424)
.....++|+|+|.+|+|||||+|+|++....
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 3455689999999999999999999865444
No 202
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.71 E-value=8.7e-09 Score=106.26 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=47.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCcc------------------------ccC------CCCccccceEEEeecCCCc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AAN------FPFCTIEPNVGIVAVPDPR 105 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~------------------------~s~------~p~tT~~~~~~~~~~~~~~ 105 (424)
.++|+++|.+|+|||||+|+|++..... +.+ ..+.|++.....+..+
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~--- 119 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE--- 119 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS---
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC---
Confidence 4799999999999999999997322110 011 1234444333333332
Q ss_pred chhhccccccccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 106 ~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
...+.||||||..++ ...+...++.+|++|+|+|+.+.
T Consensus 120 --------------~~~~~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 120 --------------HRRFSLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp --------------SEEEEECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred --------------CeEEEEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 267999999998443 33556667899999999999653
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.67 E-value=4.4e-09 Score=110.50 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc---------------cccCC------CCccccceEEEeecCCCcchhhccccc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA---------------QAANF------PFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~---------------~~s~~------p~tT~~~~~~~~~~~~~~~d~l~~~~~ 114 (424)
..+|||||+..+|||||..+|+-...+ .+.++ -+.|+......+.+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~------------- 97 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY------------- 97 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-------------
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-------------
Confidence 358999999999999999999721111 01111 13333333333443
Q ss_pred cccccCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
.+..|.|+||||.+++.. .+.+.++-+|.+|+||||.+.
T Consensus 98 ----~~~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~G 136 (548)
T 3vqt_A 98 ----RDRVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKG 136 (548)
T ss_dssp ----TTEEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTB
T ss_pred ----CCEEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCC
Confidence 348899999999988765 788889999999999999543
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.66 E-value=1.7e-08 Score=92.46 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=82.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC-----CCccccCCCCccccceE------EEeecCCCc-----chhhccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNV------GIVAVPDPR-----LHVLSGLSKSQKA 118 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~-----~~~~~s~~p~tT~~~~~------~~~~~~~~~-----~d~l~~~~~~~~~ 118 (424)
..++|+++|++|||||||+|+|++. ..+.+...|++|.+... ..+.++.+. .+.+..... ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 106 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLK--KF 106 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGG--GG
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHH--hc
Confidence 4579999999999999999999953 23344455555433210 011111100 001111111 22
Q ss_pred cCceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCCceeeeccccccCCchhhhhhhhhcccHHHHHHH
Q 014450 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (424)
Q Consensus 119 ~~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~~~~~~~~~~dp~~d~~~i~~el~~~~~~~i~~~ 198 (424)
....+.++||||..... + ... ..++.+++|+|+......... ... ....+.+ +++|+.|.....
T Consensus 107 ~~~d~iiidt~G~~~~~----~----~~~--~~~~~~i~vvd~~~~~~~~~~--~~~-~~~~~~i---iv~NK~Dl~~~~ 170 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICP----V----DFD--LGENYRVVMVSVTEGDDVVEK--HPE-IFRVADL---IVINKVALAEAV 170 (221)
T ss_dssp TTCSEEEEEEEEBSSGG----G----GCC--CSCSEEEEEEEGGGCTTHHHH--CHH-HHHTCSE---EEEECGGGHHHH
T ss_pred CCCCEEEEeCCCCCCCC----c----hhc--cccCcEEEEEeCCCcchhhhh--hhh-hhhcCCE---EEEecccCCcch
Confidence 34569999999952110 0 000 246789999998654321000 000 0001111 345666654321
Q ss_pred ---H----HHHHhhccC---CCcchhhHHHHHHHHHHHHHHHh
Q 014450 199 ---M----EKLKKGKAK---DSQSKLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 199 ---~----~~i~k~~~~---~~~Sak~~~~~~~ll~~i~~~L~ 231 (424)
. ..+...... ..+||+++.++.++++.+.+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 171 GADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 1 122222111 12699999999999999988774
No 205
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.63 E-value=2.1e-08 Score=110.52 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=59.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCC---------------CccccceEEEeecCCCcchhhccccccccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p---------------~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~ 120 (424)
..+|+|+|++|+|||||+|+|++......+..+ +.|+......+.+.... +.+..+-.......
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD-EDVKEIKQKTDGNS 97 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH-HHHHHCSSCCCSSE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc-cccccccccccCCC
Confidence 469999999999999999999954333322222 22333222222221000 00000000000113
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~ 165 (424)
..+.||||||..++.. .+...++.+|++|+|+|+.+..
T Consensus 98 ~~i~liDTPG~~df~~-------~~~~~l~~aD~ailVvDa~~g~ 135 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-------EVTAALRVTDGALVVVDTIEGV 135 (842)
T ss_dssp EEEEEECCCCCCSSCH-------HHHHHHHTCSEEEEEEETTTBS
T ss_pred ceEEEEECcCchhhHH-------HHHHHHHhCCEEEEEEeCCCCC
Confidence 6799999999976543 6677789999999999997653
No 206
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.47 E-value=2.8e-07 Score=90.40 Aligned_cols=85 Identities=13% Similarity=0.214 Sum_probs=54.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCCCcchhhccccccccccCceEEEEeCCCCCCCCCc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~i~lvDtpG~~~~~~~ 137 (424)
||.++|..|||||||++.+.++-..........|.......+ .. ...+++|||||.-+...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~----------------~v~LqIWDTAGQErf~~- 61 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--ST----------------LIDLAVMELPGQLNYFE- 61 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CS----------------SSCEEEEECCSCSSSCC-
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--cc----------------EEEEEEEECCCchhccc-
Confidence 689999999999999999884432221112233433332222 11 15699999999865421
Q ss_pred ccchhhhhhhhhhccceEEEEeecCCC
Q 014450 138 GEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 138 ~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
..+ ......++|+++++|+|+++.
T Consensus 62 -~~l--~~~~yyr~a~~~IlV~Ditd~ 85 (331)
T 3r7w_B 62 -PSY--DSERLFKSVGALVYVIDSQDE 85 (331)
T ss_dssp -CSH--HHHHHHTTCSEEEEECCCSSC
T ss_pred -hhh--hhhhhccCCCEEEEEEECCch
Confidence 001 123457899999999999765
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.45 E-value=1e-06 Score=85.46 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCCCcc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ 83 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~~~~ 83 (424)
...++|+|+|.+|||||||+|+|.|.....
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~ 45 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYP 45 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC-----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 446899999999999999999999653433
No 208
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.34 E-value=2.7e-07 Score=94.30 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC---------------CCccccCCCCccccceEEEeecCCCcchhhcccccccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN---------------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~---------------~~~~~s~~p~tT~~~~~~~~~~~~~~~d~l~~~~~~~~~~ 119 (424)
...-|+|+|.||+|||||+|.|+|. .....+.. .||...+.|++....+... -.|. ..
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~-----~~~~-~~ 138 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLI-----NKPD-GK 138 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEE-----ECSS-SC
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCcccc-----ccCC-CC
Confidence 3467999999999999999999963 22233333 3777778888765431100 0000 01
Q ss_pred CceEEEEeCCCCCCC
Q 014450 120 PASVEFVDIAGLVKG 134 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~ 134 (424)
..+++|+||||+...
T Consensus 139 ~~~vvllDTeG~~~~ 153 (447)
T 3q5d_A 139 KVAVLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEEEEECCCSS
T ss_pred cceEEEEcCCccccc
Confidence 267999999999643
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.27 E-value=2.7e-06 Score=86.14 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
....++|+|++|||||||+|+|+|.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999999973
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.26 E-value=2e-06 Score=78.76 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
..++|+++|.+|||||||+|+|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999943
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.24 E-value=9.5e-07 Score=91.61 Aligned_cols=106 Identities=17% Similarity=0.111 Sum_probs=57.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCcccc----------ceEEEeecCCCcchh--h-cccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIE----------PNVGIVAVPDPRLHV--L-SGLSKS 115 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~tT~~----------~~~~~~~~~~~~~d~--l-~~~~~~ 115 (424)
.+..|+++|.|||||||++|+|+ |...+.++.-++.... .....+.... ..|. + ...+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~-~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYT-EMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCC-CSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCC-CCCHHHHHHHHHHH
Confidence 35689999999999999999999 6666655543321100 0000011000 0000 0 000001
Q ss_pred ccccCceEEEEeCCCCCCCCCcccchhhhhhh--hhhccceEEEEeecCCC
Q 014450 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLS--HIREVDSILQVVRCFED 164 (424)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~l~--~i~~aD~il~Vvda~~~ 164 (424)
-++....++||||||..... ..+...... .+..+|.+++|+|+...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred HHHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 11134679999999986422 222222211 12379999999999764
No 212
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.22 E-value=4.8e-06 Score=79.56 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.3
Q ss_pred cEEEEEecCCCCchHHHHHhhcCCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
++++|+|.+|||||||+|.|+|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999996443
No 213
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.01 E-value=4.2e-06 Score=85.26 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+++|.|||||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=2.5e-05 Score=79.17 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred cEEEEEecCCCCchHHHHHhhcCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
++++|||.+|||||||+|+|+|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 459999999999999999999653
No 215
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.73 E-value=1.2e-05 Score=78.26 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p 88 (424)
+-.++|+|.+|||||||+|+|+|.....++..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 468999999999999999999976554444443
No 216
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.65 E-value=3.4e-05 Score=78.19 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=24.3
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
.+-.++|+|||.+|||||||+|+|+|...
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34468899999999999999999996544
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.61 E-value=7.4e-05 Score=76.09 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhh------cCCCccccCCCCccc----------cceEEEeecCCCcchh---hcccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTI----------EPNVGIVAVPDPRLHV---LSGLSKS 115 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~------g~~~~~~s~~p~tT~----------~~~~~~~~~~~~~~d~---l~~~~~~ 115 (424)
.+..|+++|.|||||||+++.|. |.....++.-++..- ......+..+ ...|. +...+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~-~~~dp~~i~~~al~~ 177 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNP-QEKDAIKLAKEGVDY 177 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCT-TCCCHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecC-CCCCHHHHHHHHHHH
Confidence 35789999999999999999998 333333332222110 0000001000 00000 0001111
Q ss_pred ccccCceEEEEeCCCCCCCCCcccchhhhh--hhhhhccceEEEEeecCCC
Q 014450 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKF--LSHIREVDSILQVVRCFED 164 (424)
Q Consensus 116 ~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~--l~~i~~aD~il~Vvda~~~ 164 (424)
-+.....++|+||||.... ...+.... +..+..+|.+++|+|+...
T Consensus 178 a~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 178 FKSKGVDIIIVDTAGRHKE---DKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp HHHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred HHhCCCCEEEEECCCcccc---hHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 1112356999999997532 22233222 2334568999999999764
No 218
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.57 E-value=3.2e-05 Score=76.71 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
+-.++|+|.+|||||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35799999999999999999997655
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.43 E-value=0.0002 Score=76.06 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+.|+|||.+|||||||+|+|+|-
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSC
T ss_pred CCeEEEECCCCChHHHHHHHHhCC
Confidence 357999999999999999999965
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.40 E-value=0.00013 Score=70.67 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF 89 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~ 89 (424)
+..++++|.+|||||||+|+|+ .....++....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 4578999999999999999999 66554444443
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.39 E-value=0.00012 Score=70.78 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN 86 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~ 86 (424)
.-.++++|++|||||||+|+|+|......+.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~ 199 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSE 199 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC---
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccc
Confidence 4578999999999999999999665544333
No 222
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=5.6e-05 Score=68.71 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC-ccccCCCCccccceEEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~-~~~s~~p~tT~~~~~~~ 98 (424)
+.-|+|+|++|||||||+|+|.+... ......+.||+.|..|.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 45789999999999999999995433 34556778998887664
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.15 E-value=0.00053 Score=66.18 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+++|.+|+||||+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 224
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.15 E-value=0.0004 Score=70.54 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35688999999999999999998
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.92 E-value=0.00072 Score=68.75 Aligned_cols=106 Identities=16% Similarity=0.085 Sum_probs=56.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh-------cCCCccccCCCCcccc----------ceEEEeecCCCcch--hh-ccccc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV-------ENGKAQAANFPFCTIE----------PNVGIVAVPDPRLH--VL-SGLSK 114 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~-------g~~~~~~s~~p~tT~~----------~~~~~~~~~~~~~d--~l-~~~~~ 114 (424)
.+..|+++|.+|+||||+...|. |.....+..-++.+.. .+.-.+..+. ..+ .+ ...+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~-~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDV-GQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCS-SSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCC-CCCHHHHHHHHHH
Confidence 34688999999999999999998 5444444433332210 0001111110 000 00 11111
Q ss_pred cccccCceEEEEeCCCCCCCCCcccchhhhh--hhhhhccceEEEEeecCCC
Q 014450 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKF--LSHIREVDSILQVVRCFED 164 (424)
Q Consensus 115 ~~~~~~~~i~lvDtpG~~~~~~~~~~~~~~~--l~~i~~aD~il~Vvda~~~ 164 (424)
.-+...+.++|+||||..... ..+.+.. ...+..+|.+++|+|+...
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~g 226 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMTG 226 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTBC
T ss_pred HHHhCCCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecchh
Confidence 111123679999999974321 2222222 2234578999999998643
No 226
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00044 Score=61.27 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=28.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC-ccccCCCCccccceEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVG 97 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~-~~~s~~p~tT~~~~~~ 97 (424)
+..++|+|++|||||||++.|.+... ......+.+|+.|..|
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 34799999999999999999995432 1223455667766554
No 227
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.52 E-value=0.00097 Score=59.28 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCchHHHHHhhcC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
++++|+|.+|+|||||++.|+|.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999954
No 228
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0012 Score=59.77 Aligned_cols=42 Identities=26% Similarity=0.306 Sum_probs=29.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCc-cccCCCCccccceEE
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVG 97 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~s~~p~tT~~~~~~ 97 (424)
+.-|+|+|++|||||||++.|++.... .....+.+|+.+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 457999999999999999999955432 334445566655433
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.44 E-value=0.0024 Score=61.49 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..|+++|.+|+||||+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
No 230
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.38 E-value=0.0045 Score=61.11 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=30.2
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~ 164 (424)
...+.+|||+|.. .+...+....+++|++|+|+|.++.
T Consensus 192 ~~~l~iwDt~GQe-------~~r~~w~~yf~~a~~iIfV~dls~~ 229 (353)
T 1cip_A 192 DLHFKMFDVGGQR-------SERKKWIHCFEGVTAIIFCVALSDY 229 (353)
T ss_dssp TEEEEEEEECCSG-------GGGGGGGGGCTTCSEEEEEEEGGGG
T ss_pred CeeEEEEeCCCch-------hhhHHHHHHHhcCCEEEEEEECccc
Confidence 3678999999973 3344666678999999999999874
No 231
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.35 E-value=0.0011 Score=59.72 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=30.3
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCc-cccCCCCccccceE
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNV 96 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~-~~s~~p~tT~~~~~ 96 (424)
+..+.-|+|+|.||||||||.+.|...... .....+.||+.+..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~ 53 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKRE 53 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCC
Confidence 344678999999999999999999843211 22233566766653
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.28 E-value=0.0027 Score=65.32 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+-.|+|+|.+|||||||++.|.|
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 55899999999999999999985
No 233
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.20 E-value=0.0011 Score=58.82 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.0
Q ss_pred EEEEEecCCCCchHHHHHhhcC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
-++|+|++|||||||++.|++.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999954
No 234
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.17 E-value=0.0014 Score=58.87 Aligned_cols=41 Identities=27% Similarity=0.272 Sum_probs=31.6
Q ss_pred EEEEecCCCCchHHHHHhhcCCC-ccccCCCCccccceEEEe
Q 014450 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGIV 99 (424)
Q Consensus 59 I~ivG~pn~GKSTL~NaL~g~~~-~~~s~~p~tT~~~~~~~~ 99 (424)
|+|+|++|||||||++.|..... ...-..+.||+.|..|-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 78999999999999999983322 233466889998877654
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.17 E-value=0.0022 Score=59.02 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.6
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcCCCc--cccCCCCccccc
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEP 94 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~~~~--~~s~~p~tT~~~ 94 (424)
+..+--++|+|++|||||||++.|+|.... .......+|+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 344568999999999999999999964431 233444555443
No 236
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.16 E-value=0.0021 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.|...|+|+|.||||||||.+.|.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0018 Score=58.28 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..++|+|++|||||||++.|+|
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999995
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.15 E-value=0.0068 Score=59.00 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.05 E-value=0.0032 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+|+|.||||||||++.|++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999994
No 240
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.03 E-value=0.003 Score=61.76 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+--|+++|.+|||||||++.|+|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999995
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.0032 Score=56.86 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=22.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+..|+|+|.+|||||||++.|.|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999999984
No 242
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.92 E-value=0.015 Score=59.07 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...-|+|+|.+++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44678899999999999999765
No 243
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.88 E-value=0.0036 Score=55.82 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+.-++|+|.+|||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999954
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.88 E-value=0.003 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhcC
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
...+--++|+|.+|||||||++.|+|-
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344567999999999999999999954
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.85 E-value=0.0027 Score=58.30 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=16.5
Q ss_pred CcEEEEEecCCCCchHHHHHhh-cCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV-ENG 80 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~-g~~ 80 (424)
+.-++|+|.+|||||||++.|. +..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4579999999999999999999 654
No 246
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.73 E-value=0.0096 Score=58.96 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=26.0
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+.+|||||.... ...+....++++++|+|+|.++
T Consensus 200 ~~~l~i~Dt~Gq~~~-------r~~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSE-------RKRWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp TEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred CeEEEEEeccchhhh-------hhhHHHHhCCCCEEEEEEECcc
Confidence 367999999998432 2355566789999999999987
No 247
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=95.66 E-value=0.012 Score=43.84 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=43.4
Q ss_pred ceEEecCCCChhhhhhhhhhhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEe
Q 014450 352 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRF 422 (424)
Q Consensus 352 ~aw~~~~gsta~~~A~~IHsd~~~~Fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f 422 (424)
+...++.|+|+.|+|..||+++.+..+-|+| + |+ .+..++.+++||.|+|.-
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v---N--------------g~--lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKV---N--------------HK--LVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEE---T--------------TE--ECCTTCBCCSSSBEEEEE
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEE---C--------------CE--EeCCCcCcCCCCEEEEEE
Confidence 3578899999999999999999998877763 1 53 578899999999998853
No 248
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.62 E-value=0.0055 Score=55.59 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+.|+|+|.|||||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 249
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.60 E-value=0.0044 Score=56.61 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|++|||||||++.|+|.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999953
No 250
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.58 E-value=0.005 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 251
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.57 E-value=0.0048 Score=57.28 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3557999999999999999999943
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.55 E-value=0.0059 Score=54.85 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|||+|.+|||||||++.|.|
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999995
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.49 E-value=0.0064 Score=52.76 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|+..|.|+|.|||||||+.+.|.
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHH
Confidence 34579999999999999999998
No 254
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.48 E-value=0.0058 Score=53.94 Aligned_cols=22 Identities=32% Similarity=0.243 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCchHHHHHhhc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.-++|+|.+|||||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999983
No 255
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.43 E-value=0.0055 Score=53.65 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.7
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+--++|+|.+|||||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4578999999999999999866
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.42 E-value=0.0066 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+..|+|+|.+|||||||++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999954
No 257
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.37 E-value=0.0062 Score=56.74 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
-.++|+|+.|||||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999943
No 258
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.37 E-value=0.0065 Score=55.34 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|..|+|||||++.|+|-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999965
No 259
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.34 E-value=0.0077 Score=55.78 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+|+|.||||||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 260
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.30 E-value=0.0076 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+|+|.+|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.30 E-value=0.0067 Score=55.56 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|..|||||||++.|+|-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999943
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.29 E-value=0.0066 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 263
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.28 E-value=0.0066 Score=57.46 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3557999999999999999999953
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.28 E-value=0.0068 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999943
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.27 E-value=0.0067 Score=57.74 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|+.|||||||++.|+|
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999999994
No 266
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.26 E-value=0.0069 Score=58.56 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|++|+|||||++.|+|
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999999995
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.26 E-value=0.0068 Score=57.19 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 268
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.25 E-value=0.0084 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCchHHHHHhhc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+.|+|+|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999983
No 269
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.24 E-value=0.0076 Score=56.13 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999954
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.19 E-value=0.0093 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
|...++|+|++|+|||||+++|.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 346799999999999999999993
No 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.19 E-value=0.0081 Score=56.17 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999943
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.18 E-value=0.0076 Score=55.64 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999943
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.17 E-value=0.0077 Score=56.01 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999943
No 274
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.17 E-value=0.0078 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|..|+|||||++.|+|
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345799999999999999999994
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.13 E-value=0.01 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+..|+|+|++|||||||.+.|.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La 46 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALN 46 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 276
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.13 E-value=0.027 Score=56.50 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=29.8
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCC
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~ 163 (424)
...+.+|||+|.- .+...+....++|+++|+|+|.++
T Consensus 216 ~v~l~iwDtaGQe-------~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 216 KVNFHMFDVGGQR-------DERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp TEEEEEEEECCSG-------GGGGGGGGGTTTCCEEEEEEETTG
T ss_pred Cccceecccchhh-------hhhhhhHhhccCCCEEEEEEECcc
Confidence 3678999999983 333456677899999999999987
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.12 E-value=0.008 Score=56.83 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3457999999999999999999943
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.11 E-value=0.0081 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.11 E-value=0.0081 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.09 E-value=0.0091 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|+|+|.|||||||+.+.|.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999997
No 281
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.09 E-value=0.005 Score=54.35 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..|+|+|.+|+|||||++.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~ 23 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMM 23 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999999
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.06 E-value=0.012 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++..|.|+|.|||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 283
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.05 E-value=0.0087 Score=56.60 Aligned_cols=24 Identities=29% Similarity=0.257 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|..|||||||++.|+|
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 355899999999999999999994
No 284
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.04 E-value=0.017 Score=56.62 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..+.+|||+|. +.....+....++++++|+|+|.+
T Consensus 161 v~l~iwDtaGQ-------e~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 161 IPFHLIDVGGQ-------RSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CEEEEEECCSC-------HHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeccccCCCc-------ccccccHHHHhccCCEEEEEEECC
Confidence 67999999997 445556677789999999999998
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.04 E-value=0.011 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCchHHHHHhhc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+.|+|+|.+||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999994
No 286
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.04 E-value=0.0099 Score=50.93 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.9
Q ss_pred cEEEEEecCCCCchHHHHHh
Q 014450 57 LRAGIVGLPNVGKSTLFNAV 76 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL 76 (424)
+.|+|+|.|||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999999
No 287
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.03 E-value=0.015 Score=58.86 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..|+++|.+|+||||++..|.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999983
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.02 E-value=0.0095 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|..|||||||++.|+|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999994
No 289
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.00 E-value=0.01 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+...|+|+|.||||||||.+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
No 290
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.99 E-value=0.0092 Score=56.01 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.98 E-value=0.0092 Score=56.59 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999943
No 292
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=94.97 E-value=0.08 Score=51.54 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..+.+|||+|. +.....+....++++++++|+|.+
T Consensus 167 v~l~iwDtgGQ-------e~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 167 VIFRMVDVGGQ-------RSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp EEEEEEEECCS-------HHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred eeeEEEEcCCc-------hhHHHHHHHHhCCCCEEEEEEECc
Confidence 67899999997 344446667789999999999887
No 293
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.96 E-value=0.012 Score=51.14 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|.|+|+|||||||+.++|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 294
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.95 E-value=0.013 Score=52.50 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.++..|+|+|.||+|||||.+.|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999994
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.95 E-value=0.01 Score=56.59 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.93 E-value=0.012 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+|+|.||||||||.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 297
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.93 E-value=0.0097 Score=56.22 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|||||||++.|+|-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.92 E-value=0.0089 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEecCCCCchHHHHHhhcC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.++|+|.+|+|||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999999954
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.87 E-value=0.0098 Score=56.09 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+-.++|+|++|||||||+++|+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3445799999999999999999994
No 300
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.87 E-value=0.013 Score=50.83 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.++|+|..|||||||++.|+|.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999999643
No 301
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.85 E-value=0.011 Score=53.40 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+--++|+|++|||||||++.|+|
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 302
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.80 E-value=0.013 Score=50.37 Aligned_cols=21 Identities=19% Similarity=-0.058 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|+|.|||||||+.+.|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 303
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.78 E-value=0.011 Score=51.71 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|.+.|+|+|.|||||||+.+.|.
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999997
No 304
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.77 E-value=0.015 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++..|+++|.|||||||+.+.|.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~ 34 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA 34 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 305
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.73 E-value=0.015 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.|+|.|.|||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 306
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.73 E-value=0.013 Score=51.79 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|+|.|||||||+.+.|.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~ 21 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEIS 21 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHH
Confidence 469999999999999999998
No 307
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.68 E-value=0.014 Score=52.54 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|+|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.64 E-value=0.014 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+-.++|+|..|+|||||++.|+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 55799999999999999999994
No 309
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.64 E-value=0.014 Score=56.49 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+.-|||+|.+|||||||++.|.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999999995
No 310
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.64 E-value=0.009 Score=57.78 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|||.+|||||||++.|+|
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 356899999999999999999994
No 311
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.57 E-value=0.014 Score=53.48 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+--++|+|++|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 312
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.56 E-value=0.016 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|+|+|+|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 313
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.017 Score=51.54 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|+|+|.|||||||+.+.|.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.54 E-value=0.02 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|+|.|.|||||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 315
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.53 E-value=0.016 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..|||+|.+|||||||++.|.|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999984
No 316
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.49 E-value=0.016 Score=56.60 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|.+|+|||||+|+|+|-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999943
No 317
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.44 E-value=0.017 Score=55.33 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|..|+|||||++.|+|-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999943
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.38 E-value=0.022 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.|+|.|.|||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 319
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.37 E-value=0.016 Score=57.41 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.+||+|+.|||||||++.|+|-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3557999999999999999999943
No 320
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.37 E-value=0.022 Score=50.47 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.6
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...+.|+|+|.++|||||+.+.|.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 321
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.019 Score=50.17 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|.|.|||||||+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.35 E-value=0.022 Score=51.05 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=22.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+..|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.34 E-value=0.02 Score=50.08 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|.|.|.|||||||+.+.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999998
No 324
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.32 E-value=0.017 Score=50.26 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..|.|+|.|||||||+.+.|.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 379999999999999999997
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.29 E-value=0.023 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|+|.|||||||+.+.|.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 326
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.29 E-value=0.014 Score=57.52 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.-+++|+|.+|+|||||++.|+|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999954
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.28 E-value=0.023 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.|+|+|.|||||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 328
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.25 E-value=0.024 Score=49.53 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|...|+|.|.|+|||||+.+.|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999997
No 329
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.25 E-value=0.02 Score=49.18 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|.|+|.|.|+|||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 330
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.25 E-value=0.022 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+|+|.+|||||||++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.24 E-value=0.022 Score=50.74 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|.|.|||||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 332
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.24 E-value=0.021 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|+|.|+|||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 333
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.23 E-value=0.019 Score=56.73 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|.+|+|||||+|+|++
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999994
No 334
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.22 E-value=0.024 Score=50.49 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...++.|+|+|.|+|||||+.+.|.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3446789999999999999999997
No 335
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.21 E-value=0.019 Score=49.21 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..++|+|.+|+|||||++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999994
No 336
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.21 E-value=0.022 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|+|.|.+||||||+.+.|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.20 E-value=0.018 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|+|+|.|+|||||+.+.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 338
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.14 E-value=0.023 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|.|+|.|||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.14 E-value=0.023 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..+..|||+|.+|||||||++.|.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 340
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.13 E-value=0.02 Score=56.51 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~ 103 (424)
+--++|+|+.|||||||++.|+|-. .|..|.+.+.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~------------~p~~G~I~i~G 65 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE------------QPDSGEISLSG 65 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 4578999999999999999999433 23457776655
No 341
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.07 E-value=0.024 Score=51.07 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|+|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 342
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.05 E-value=0.02 Score=50.01 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..++|+|.||+|||||++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999983
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.04 E-value=0.023 Score=49.03 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|.|.|||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 344
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.01 E-value=0.019 Score=56.61 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.-.|+|+|.+|+|||||+++|+|
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999999984
No 345
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.99 E-value=0.021 Score=56.31 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.98 E-value=0.027 Score=51.29 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|+|.|||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999998
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.98 E-value=0.026 Score=51.04 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|+|.|||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999998
No 348
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.94 E-value=0.022 Score=56.30 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|++|||||||++.|+|-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3457899999999999999999943
No 349
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.93 E-value=0.027 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|+|+|.+||||||+.+.|.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~ 26 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALE 26 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.87 E-value=0.027 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|.|+|.|||||||+.+.|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.83 E-value=0.029 Score=50.84 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.|.|+|.|||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 352
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.83 E-value=0.027 Score=49.29 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|.|.|||||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 353
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.79 E-value=0.024 Score=56.28 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~ 103 (424)
+-.++|+|+.|||||||++.|+|-. .|..|.+.+.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~------------~p~~G~I~i~g 64 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE------------EPSRGQIYIGD 64 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS------------CCSEEEEEETT
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC------------CCCccEEEECC
Confidence 4578999999999999999999432 24457666655
No 354
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.79 E-value=0.024 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcC
Confidence 3457899999999999999999943
No 355
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.79 E-value=0.024 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|.+|||||||++.|+|-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 457899999999999999999954
No 356
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.79 E-value=0.034 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=22.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..++..|+|+|.||+||||+.+.|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~ 46 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELE 46 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3456789999999999999999998
No 357
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.70 E-value=0.028 Score=58.15 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..++|+|.+|||||||+|+|+|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999994
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.70 E-value=0.038 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=22.4
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..++.|+|.|.|||||||+.+.|.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999999997
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.68 E-value=0.028 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=16.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|.|.|.|||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 360
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.68 E-value=0.026 Score=56.05 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3457899999999999999999943
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.65 E-value=0.018 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
.|+|+|.+||||||+.+.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 362
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.64 E-value=0.032 Score=48.62 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|.|+|.||+||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.63 E-value=0.035 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|.|+|.|+|||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 364
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.62 E-value=0.075 Score=52.31 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=27.4
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..+.+|||+|... +...+....+++|++++|+|.+
T Consensus 183 v~l~iwDtaGQe~-------~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-------ERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp -EEEEEEECCSTT-------GGGGTGGGCTTEEEEEEEEEGG
T ss_pred eeeEEEECCCchh-------hhHHHHHHhCCCCEEEEEEECc
Confidence 6799999999832 3335566789999999999997
No 365
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.55 E-value=0.032 Score=55.32 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.|+|+|.+|+|||||+++|++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999994
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.54 E-value=0.034 Score=53.74 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.1
Q ss_pred cEEEEEecCCCCchHHHHHhhcCC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.-++|+|+.|||||||+|.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 468899999999999999999653
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.52 E-value=0.039 Score=53.67 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..++-|||+|.+|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999973
No 368
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.49 E-value=0.034 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|.|.+||||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.49 E-value=0.035 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.|+|+|.+|||||||++.|.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356899999999999999999984
No 370
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.49 E-value=0.031 Score=55.83 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|++|||||||++.|+|
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 355899999999999999999994
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.41 E-value=0.045 Score=57.15 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.8
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhhc
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
...+..|+|+|.+|||||||+++|.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 44567899999999999999999983
No 372
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.40 E-value=0.029 Score=53.12 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
-++|+|+||+|||||+++|++
T Consensus 46 GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 399999999999999999994
No 373
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.39 E-value=0.034 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.5
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
..+.-|+|+|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999943
No 374
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.35 E-value=0.022 Score=56.10 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|+.|||||||++.|+|-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 457999999999999999999943
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.34 E-value=0.049 Score=52.07 Aligned_cols=24 Identities=21% Similarity=0.038 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+..|+|+|.+|||||||.+.|.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999998
No 376
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.30 E-value=0.094 Score=46.32 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=25.1
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecC
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~ 162 (424)
..++++|||+.. .......+..||.++++++.+
T Consensus 76 yD~viiD~~~~~---------~~~~~~~l~~ad~viiv~~~~ 108 (206)
T 4dzz_A 76 YDFAIVDGAGSL---------SVITSAAVMVSDLVIIPVTPS 108 (206)
T ss_dssp SSEEEEECCSSS---------SHHHHHHHHHCSEEEEEECSC
T ss_pred CCEEEEECCCCC---------CHHHHHHHHHCCEEEEEecCC
Confidence 569999999863 124556677899999999863
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.29 E-value=0.039 Score=51.20 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+.|+|.|.|+|||||+.+.|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~ 43 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIV 43 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999997
No 378
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.29 E-value=0.03 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.-.|+|+|.+|+|||||+++|+|
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 44699999999999999999994
No 379
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.25 E-value=0.036 Score=51.88 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|+|+|.+|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 380
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.22 E-value=0.035 Score=51.61 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhc
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.++..|.++|.|||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999999973
No 381
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.21 E-value=0.035 Score=52.65 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+--++|+|.||+|||||++.|++
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999999993
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.18 E-value=0.039 Score=50.21 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|.|.|||||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.10 E-value=0.045 Score=48.14 Aligned_cols=21 Identities=33% Similarity=0.379 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..++|+|.+|+|||||++.|.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~ 25 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWV 25 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 569999999999999999998
No 384
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.09 E-value=0.02 Score=56.45 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|+.|||||||++.|+|-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999943
No 385
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.03 E-value=0.048 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|+|.|.|||||||+.+.|.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 386
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.01 E-value=0.048 Score=48.36 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.|+|.|.+||||||+.+.|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 387
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.99 E-value=0.041 Score=56.22 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+..++|+|..|||||||++.|+|-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 56789999999999999999999643
No 388
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.94 E-value=0.039 Score=51.01 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
-+.|+|.||+|||||++++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999994
No 389
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.92 E-value=0.046 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++++|.+|||||||++.|+|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999999985
No 390
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.88 E-value=0.043 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+--++|+|.||+|||||++.|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999999999998
No 391
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.87 E-value=0.043 Score=57.17 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.3
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
..+-.++|+|..|||||||++.|+|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 445689999999999999999999643
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.81 E-value=0.05 Score=50.38 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|+|.|+||+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 393
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.74 E-value=0.022 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=18.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|+|++-|.+|+||||+.-.|.
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA 21 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLI 21 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHH
T ss_pred CEEEEecCCCCCHHHHHHHHH
Confidence 478899999999999988886
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.73 E-value=0.056 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+.|.|+|.|+|||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999998
No 395
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.70 E-value=0.052 Score=47.29 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.+|+|..++|||||+.+|.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999997
No 396
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.68 E-value=0.049 Score=53.47 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-+++|+|.+|+|||||++.|+|.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999955
No 397
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.65 E-value=0.058 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++..|+|.|.|||||||+.+.|.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~ 47 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVY 47 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHH
Confidence 356789999999999999999998
No 398
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.65 E-value=0.054 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|.|+|.|||||||+.+.|.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~ 23 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFI 23 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 399
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.64 E-value=0.044 Score=57.08 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+--+||+|..|||||||++.|+|.-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34579999999999999999999643
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.62 E-value=0.062 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.-|.|+|.||||||||.+.|.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 401
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.53 E-value=0.056 Score=48.97 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
|.|.|+|.|||||+|....|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 402
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.52 E-value=0.059 Score=56.69 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|++|+|||||++.|+|
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356899999999999999999994
No 403
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.52 E-value=0.3 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....|++.|..|+||||+.-.|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEEECCCCccHHHHHHHHH
Confidence 34678888999999999987775
No 404
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.43 E-value=0.061 Score=56.44 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|++|+|||||++.|+|-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3568999999999999999999943
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.05 Score=57.52 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.+||+|..|+|||||++.|+|-.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45689999999999999999999743
No 406
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.36 E-value=0.049 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
-.++|+|+.|||||||+++|+|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999963
No 407
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.29 E-value=0.066 Score=56.41 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~ 103 (424)
.+-.++|+|++|+|||||++.|+|-. +|..|.+.+++
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 416 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDG 416 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECC
Confidence 35689999999999999999999432 24456666654
No 408
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.28 E-value=0.053 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
-|.|+|.||+|||||+++|.+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHH
Confidence 499999999999999999994
No 409
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.12 E-value=0.054 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCchHHHHHhhcC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
-.++|+|+||+|||||++++++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999953
No 410
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.12 E-value=0.059 Score=56.95 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
..+-.++|+|..|+|||||++.|+|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345689999999999999999999643
No 411
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.11 E-value=0.067 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.|+|.|.|||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 412
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.03 E-value=0.066 Score=56.18 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|+|++|+|||||++.|+|-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999943
No 413
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.96 E-value=0.072 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|+|+|.++|||||+.+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999998
No 414
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.95 E-value=0.066 Score=47.79 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+--++|+|.||+|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999994
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.93 E-value=0.082 Score=48.40 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+..|+|+|.+|+||||+.+.|.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~ 37 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIA 37 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 416
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.89 E-value=0.083 Score=50.05 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|+|.|.|+|||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999997
No 417
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.84 E-value=0.068 Score=49.82 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
-|+|+|+||||||||.++|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999973
No 418
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.79 E-value=0.067 Score=52.81 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.+|+|.+||||||||++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999997
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.77 E-value=0.077 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.|+|||.+|||||||++.|+|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345799999999999999999985
No 420
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.73 E-value=0.078 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..++|+|.||+|||||+++|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999994
No 421
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.69 E-value=0.074 Score=53.89 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-+++|+|.+|+|||||++.|+|.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999954
No 422
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.67 E-value=0.073 Score=48.30 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+--++|+|.||+|||||+..|++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999994
No 423
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.61 E-value=0.06 Score=56.46 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~ 103 (424)
.+-.++|+|++|+|||||++.|+|-- +|..|.+.+++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 402 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDG 402 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 35689999999999999999999432 24567666655
No 424
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.56 E-value=0.07 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
+-.++|+|..|+|||||++.|+|-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999543
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.54 E-value=0.072 Score=56.00 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+-.++|+|++|+|||||++.|.|
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999994
No 426
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.48 E-value=0.076 Score=61.15 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+-+|||||++|+|||||++.|.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHh
Confidence 35699999999999999999999
No 427
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.34 E-value=0.089 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.4
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+...|.++|.||+||||+.+.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999998
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.20 E-value=0.11 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.+||+|..|+|||||++.|+|-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999543
No 429
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.04 E-value=0.09 Score=44.88 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.+|+|..|+|||||+.||.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999987
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.03 E-value=0.086 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCchHHHHHhhcC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
+-.++|+|..|+|||||++.|+|-
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999954
No 431
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.90 E-value=0.11 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.||+|.|+|||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 5799999999999999999997
No 432
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.75 E-value=0.13 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...+.|.|.||+|||||++++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 433
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.63 E-value=0.097 Score=55.31 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEecCCCCchHHHHHhhcCC
Q 014450 58 RAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.++|+|..|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999543
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.45 E-value=0.47 Score=44.49 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..+.|.|.||+|||||.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 346899999999999999999983
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.33 E-value=0.12 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+--++|+|.|++|||||+..+++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345789999999999999999994
No 436
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.25 E-value=0.54 Score=42.12 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=24.1
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeec
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda 161 (424)
..++++|||+.... ..+...+..||.++++++.
T Consensus 68 yD~viiD~p~~~~~--------~~~~~~l~~aD~viiv~~~ 100 (209)
T 3cwq_A 68 YQNIVIDTQARPED--------EDLEALADGCDLLVIPSTP 100 (209)
T ss_dssp CSEEEEEEECCCSS--------SHHHHHHHTSSEEEEEECS
T ss_pred CCEEEEeCCCCcCc--------HHHHHHHHHCCEEEEEecC
Confidence 56999999986211 1445567789999999886
No 437
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=89.75 E-value=0.024 Score=52.30 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
-++|+|++|+|||||+++|+|
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 358999999999999999995
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.73 E-value=0.12 Score=48.16 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.|+|.|.+||||||+.+.|.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 439
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.65 E-value=0.5 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...+.|+|.||+|||+|.++|.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 440
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=89.53 E-value=0.18 Score=46.53 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..|.|+|.||+|||||.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34699999999999999999984
No 441
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=89.52 E-value=0.12 Score=53.35 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCchHHHHHhhcC
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.-|.|+|.||+|||||++++.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999954
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.22 E-value=0.2 Score=45.84 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|.|.+||||||+.+.|.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~ 23 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLT 23 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 443
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.04 E-value=0.17 Score=56.11 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.++|+|..|+|||||++.|+|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999643
No 444
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.90 E-value=0.18 Score=45.17 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++.|+|+|.|++||||+.+.|.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~ 24 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVA 24 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999998
No 445
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.85 E-value=0.28 Score=41.14 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....|.|.|.||+|||++..++.
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHH
Confidence 34679999999999999999998
No 446
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.85 E-value=0.1 Score=57.93 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
.+-.++|+|..|+|||||++.|+|..
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999999543
No 447
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.76 E-value=0.22 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....+.|.|.||+|||||.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~ 73 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAAC 73 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 448
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.76 E-value=0.22 Score=45.40 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.0
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.-|.|+|.|||||||....|+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3456778999999999999998
No 449
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.73 E-value=0.28 Score=46.50 Aligned_cols=85 Identities=8% Similarity=0.123 Sum_probs=49.5
Q ss_pred hhhhhhhhhhccceEEEEeecCCCCceee--eccccccCCchhhhhhhhhcccHHHHHH-----HHHHHHhh-ccCCCcc
Q 014450 141 LGNKFLSHIREVDSILQVVRCFEDNDIVH--VNGKVDPKSDVDVINLELVFSDLDQIEK-----RMEKLKKG-KAKDSQS 212 (424)
Q Consensus 141 ~~~~~l~~i~~aD~il~Vvda~~~~~~~~--~~~~~dp~~d~~~i~~el~~~~~~~i~~-----~~~~i~k~-~~~~~~S 212 (424)
..++++..+.+||++++|+|+..+....+ +.... .+.+.+ +++|+.|.+.. .....+.. .+...+|
T Consensus 13 a~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---~~kp~i---lVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS 86 (282)
T 1puj_A 13 ARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---KNKPRI---MLLNKADKADAAVTQQWKEHFENQGIRSLSIN 86 (282)
T ss_dssp HHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---SSSCEE---EEEECGGGSCHHHHHHHHHHHHTTTCCEEECC
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---CCCCEE---EEEECcccCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 34688899999999999999987654211 11111 122222 44566654432 12222211 1111268
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 014450 213 KLKEDAEKAALEKIQQALM 231 (424)
Q Consensus 213 ak~~~~~~~ll~~i~~~L~ 231 (424)
|+++.++.++++.+.+.++
T Consensus 87 A~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 87 SVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCTTGGGHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHH
Confidence 9999999888888877764
No 450
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.69 E-value=0.2 Score=45.40 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=19.0
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+--++|+|.||+|||||+..++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999987776
No 451
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.68 E-value=0.22 Score=44.01 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+.|.|.||+|||||+.++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~ 75 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIA 75 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999998
No 452
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.61 E-value=0.19 Score=43.09 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...+.|.|.||+|||||..++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 453
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.48 E-value=0.22 Score=48.37 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
|...|+|+|.|+||||||...|..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999983
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.37 E-value=0.22 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.-|.++|.|||||||+.+.|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34678899999999999999998
No 455
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.37 E-value=0.21 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|||.+|+|||||++.|.|-
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred CCcEEEEEecCCCcHHHHHHHhccc
Confidence 3568999999999999999999953
No 456
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.30 E-value=0.23 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..-|+|+|.++||||||...|..
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHH
Confidence 34799999999999999999983
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.28 E-value=0.24 Score=47.65 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
++..|+++|.+|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 345789999999999999999984
No 458
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=88.18 E-value=0.096 Score=52.05 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++|+|..|+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999985
No 459
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.17 E-value=1.5 Score=39.39 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=22.7
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeec
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda 161 (424)
..++++|||+... ..+...+..+|.+++|++.
T Consensus 112 yD~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~ 143 (237)
T 1g3q_A 112 FDFILIDCPAGLQ---------LDAMSAMLSGEEALLVTNP 143 (237)
T ss_dssp CSEEEEECCSSSS---------HHHHHHHTTCSEEEEEECS
T ss_pred CCEEEEECCCCcC---------HHHHHHHHHCCeEEEEecC
Confidence 5688999987531 2445567788988888875
No 460
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=88.13 E-value=0.21 Score=57.41 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~ 79 (424)
.+-.++|||.+|+|||||++.|.|-
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999963
No 461
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.13 E-value=0.2 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+-|||.|.+||||||+.+.|.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~ 26 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFD 26 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 462
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.06 E-value=0.54 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.3
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
..+.-|-+.|+||+|||+|..++.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHH
Confidence 345679999999999999999998
No 463
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=87.98 E-value=0.26 Score=45.31 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.3
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++-|++-|.+||||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999998
No 464
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=87.94 E-value=0.15 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+-.++|+|..|||||||+|.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 4578999999999999998764
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.92 E-value=0.88 Score=43.70 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|.|.|.||+|||+|..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 3578999999999999999998
No 466
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=87.89 E-value=0.25 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....+|.|+|.+++|||||+..|-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 346899999999999999999984
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=87.84 E-value=0.23 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+--++|+|.|++|||||++.|++
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999994
No 468
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=87.74 E-value=0.34 Score=49.97 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=22.4
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
....+.|.++|.+||||||+-++|.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La 416 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALL 416 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred cccceEEEecccCCCCHHHHHHHHH
Confidence 3456899999999999999999998
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=87.72 E-value=0.24 Score=44.46 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=18.7
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.-.+|+|..++|||||+.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 456889999999999999986
No 470
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.57 E-value=0.86 Score=41.93 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=24.1
Q ss_pred CceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeec
Q 014450 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 120 ~~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda 161 (424)
...++++|||+... ......+..||.+++|++.
T Consensus 111 ~yD~iiiD~pp~~~---------~~~~~~l~~aD~viiv~~~ 143 (257)
T 1wcv_1 111 GYDLVLLDAPPSLS---------PLTLNALAAAEGVVVPVQA 143 (257)
T ss_dssp TCSEEEEECCSSCC---------HHHHHHHHHCSEEEEEEES
T ss_pred CCCEEEEeCCCCCC---------HHHHHHHHHCCeEEEEecC
Confidence 46799999998631 1234556779999999986
No 471
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.46 E-value=0.3 Score=40.91 Aligned_cols=22 Identities=9% Similarity=-0.100 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
...|.|.|.||+|||++..++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4569999999999999999998
No 472
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.30 E-value=0.24 Score=51.17 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred CcEEEEEecCCCCchHHHHHh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAV 76 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL 76 (424)
+-.++|+|.+|||||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 457999999999999999993
No 473
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.14 E-value=0.4 Score=43.32 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+.-|.|+|.|++|||||...|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999983
No 474
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.14 E-value=0.27 Score=48.32 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+.|+|+|.||+||||+..+|.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999984
No 475
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=87.12 E-value=0.21 Score=45.46 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.8
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.+.|+||+||||+..+|.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 476
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=86.99 E-value=0.31 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~~ 81 (424)
+.-|.|+|.+|+|||||.++|.+...
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 46799999999999999999995543
No 477
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.93 E-value=0.28 Score=47.15 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=19.1
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.+|+|..|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 68899999999999999998
No 478
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=86.92 E-value=0.82 Score=41.30 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=22.9
Q ss_pred ceEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeec
Q 014450 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (424)
Q Consensus 121 ~~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda 161 (424)
..++++|||+... ......+..||.+++|++.
T Consensus 119 yD~viiD~p~~~~---------~~~~~~l~~ad~viiv~~~ 150 (245)
T 3ea0_A 119 YDYIIVDFGASID---------HVGVWVLEHLDELCIVTTP 150 (245)
T ss_dssp CSEEEEEEESSCC---------TTHHHHGGGCSEEEEEECS
T ss_pred CCEEEEeCCCCCc---------hHHHHHHHHCCEEEEEecC
Confidence 5689999998542 1344556779999998875
No 479
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.91 E-value=0.37 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+++.|.|+|.|||||||+.++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 56789999999999999999997
No 480
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=86.67 E-value=0.14 Score=49.04 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=48.6
Q ss_pred eEEEEeCCCCCCCCCcccchhhhhhhhhhccceEEEEeecCCCC-ceeeeccccccC--CchhhhhhhhhcccHHHHHHH
Q 014450 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN-DIVHVNGKVDPK--SDVDVINLELVFSDLDQIEKR 198 (424)
Q Consensus 122 ~i~lvDtpG~~~~~~~~~~~~~~~l~~i~~aD~il~Vvda~~~~-~~~~~~~~~dp~--~d~~~i~~el~~~~~~~i~~~ 198 (424)
.+.+||| .-+.. .-....++++|++++|+|++++. +...+..+...+ .+++.+ ++.||.|..+.+
T Consensus 64 ~~~iwD~--qer~~-------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~pii---lv~NK~DL~~~~ 131 (301)
T 1u0l_A 64 SGVIENV--LHRKN-------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETV---MVINKMDLYDED 131 (301)
T ss_dssp SEEEEEE--CCCSC-------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEE---EEECCGGGCCHH
T ss_pred eEEEEEE--ccccc-------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEE---EEEeHHHcCCch
Confidence 5899999 21111 12235689999999999998764 221111111000 122222 445666543221
Q ss_pred ----H-HHHHhhc---cCCCcchhhHHHHHHHHHHH
Q 014450 199 ----M-EKLKKGK---AKDSQSKLKEDAEKAALEKI 226 (424)
Q Consensus 199 ----~-~~i~k~~---~~~~~Sak~~~~~~~ll~~i 226 (424)
. ....... ....+||+++.+++++++.+
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l 167 (301)
T 1u0l_A 132 DLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 167 (301)
T ss_dssp HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHh
Confidence 1 1111111 11136999999999887754
No 481
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.67 E-value=0.29 Score=43.42 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=19.2
Q ss_pred cEEEEEecCCCCchHHHHHhh
Q 014450 57 LRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.-+.|.|.||+|||||+.++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~ 66 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLA 66 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368899999999999999997
No 482
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.64 E-value=0.3 Score=56.10 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=28.7
Q ss_pred CCcEEEEEecCCCCchHHHHHhhcCCCccccCCCCccccceEEEeecCC
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g~~~~~~s~~p~tT~~~~~~~~~~~~ 103 (424)
.+-.+||||++|+|||||++.|.|-. +|..|.+.+++
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDG 1094 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECC
Confidence 35689999999999999999999432 34567776655
No 483
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=86.60 E-value=0.48 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCchHHHHHhhc
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
+..+.|.|.||+|||||++++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.55 E-value=0.35 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
++-|++-|.++|||||+.+.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 485
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=86.28 E-value=0.044 Score=52.61 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=40.6
Q ss_pred hhhhccceEEEEeecCCCC-ceeeeccccccC--CchhhhhhhhhcccHHHHHHH----HHH----HHhh-ccCCCcchh
Q 014450 147 SHIREVDSILQVVRCFEDN-DIVHVNGKVDPK--SDVDVINLELVFSDLDQIEKR----MEK----LKKG-KAKDSQSKL 214 (424)
Q Consensus 147 ~~i~~aD~il~Vvda~~~~-~~~~~~~~~dp~--~d~~~i~~el~~~~~~~i~~~----~~~----i~k~-~~~~~~Sak 214 (424)
..++++|++++|+|++++. +...+......+ .+++.+ +++||+|.+... ... .... .....+||+
T Consensus 75 ~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~i---lV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~ 151 (302)
T 2yv5_A 75 PKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPV---IVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAK 151 (302)
T ss_dssp TEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEE---EEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEE---EEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECC
Confidence 5689999999999998764 321111111000 122222 456666654321 111 1111 011126999
Q ss_pred hHHHHHHHHHHH
Q 014450 215 KEDAEKAALEKI 226 (424)
Q Consensus 215 ~~~~~~~ll~~i 226 (424)
++.++++|++.+
T Consensus 152 ~g~gi~~L~~~l 163 (302)
T 2yv5_A 152 TGEGIDELVDYL 163 (302)
T ss_dssp TCTTHHHHHHHT
T ss_pred CCCCHHHHHhhc
Confidence 999988887654
No 486
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=86.11 E-value=0.35 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.0
Q ss_pred cCCcEEEEEecCCCCchHHHHHhh
Q 014450 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 54 ~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++.-|.++|.|++||||+-+.|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999997
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.04 E-value=0.33 Score=42.53 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.9
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.|.|.||+|||||..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999998
No 488
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.02 E-value=0.44 Score=43.36 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.-|++-|.+||||||+.+.|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 489
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.93 E-value=0.28 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.4
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+.|.|.||+|||||+++|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999985
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.91 E-value=0.41 Score=42.27 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCchHHHHHhhcCC
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~g~~ 80 (424)
+.=|.|.|.+|+|||||.-+|....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 4568999999999999999998443
No 491
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.87 E-value=0.45 Score=48.96 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCchHHHHHhhc
Q 014450 57 LRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 57 ~~I~ivG~pn~GKSTL~NaL~g 78 (424)
..|.|.|.||+|||+|..+|..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 5899999999999999999983
No 492
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=85.80 E-value=0.39 Score=44.71 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..+.|.|.||+|||||.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345799999999999999999983
No 493
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.75 E-value=0.36 Score=46.85 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.6
Q ss_pred EEEEEecCCCCchHHHHHhhc
Q 014450 58 RAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+.|.|.||+|||||++++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999984
No 494
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.50 E-value=0.35 Score=46.95 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.0
Q ss_pred EEEEEecCCCCchHHHHHhh
Q 014450 58 RAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 58 ~I~ivG~pn~GKSTL~NaL~ 77 (424)
-.+|+|..|+|||||+.|++
T Consensus 25 ~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45799999999999999985
No 495
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.45 E-value=0.73 Score=46.41 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.-|.+.|+||+|||+|..++.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 34568999999999999999998
No 496
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.44 E-value=0.46 Score=43.88 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+.-|++.|.++|||||+.+.|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999997
No 497
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.42 E-value=0.48 Score=49.58 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.1
Q ss_pred ccCCcEEEEEecCCCCchHHHHHhh
Q 014450 53 ISMSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 53 ~~~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.+.++.|.|.|.|||||||+.++|.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La 417 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQ 417 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHH
Confidence 3456789999999999999999997
No 498
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=85.30 E-value=0.45 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCchHHHHHhh
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
.++-|++.|.++|||||+.+.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.28 E-value=0.44 Score=43.59 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCchHHHHHhh
Q 014450 56 SLRAGIVGLPNVGKSTLFNAVV 77 (424)
Q Consensus 56 ~~~I~ivG~pn~GKSTL~NaL~ 77 (424)
+..|.|.|.||+|||||..++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la 60 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVA 60 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.28 E-value=0.44 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCchHHHHHhhc
Q 014450 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (424)
Q Consensus 55 ~~~~I~ivG~pn~GKSTL~NaL~g 78 (424)
.+..|.|.|.||+|||||.+++.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHH
Confidence 345799999999999999999984
Done!