RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014450
(424 letters)
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 337 bits (866), Expect = e-116
Identities = 137/284 (48%), Positives = 190/284 (66%), Gaps = 7/284 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ +AAN+PFCTIEPN G+V +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALT-KAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE++DIVHV GK+
Sbjct: 60 PERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGK 234
DP D+D IN EL +DLD E+ +++L+K + E + +EKI L +
Sbjct: 120 DPLDDIDTINTELALADLDSCERAIQRLQKRAKGG---DKEAKFELSVMEKILPVLENAG 176
Query: 235 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 294
RSV L+ E +IK LT+KP +Y+ANV E + NP+++ V +A+ +
Sbjct: 177 MIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFEN---NPYLDRVREIAAKEGAVV 233
Query: 295 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338
V + A +E+E+ EL EE+VE+L LG+ E GL +IR+ Y+LL
Sbjct: 234 VPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 259 bits (662), Expect = 7e-85
Identities = 107/292 (36%), Positives = 159/292 (54%), Gaps = 7/292 (2%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
+ +L+ GIVG+PNVGKST F A+ ++ AN+P+ TI+P VAVPD R L
Sbjct: 6 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCE 65
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
K + VPA + DIAGL KGAS G GLGN FLSH+R VD+I QVVR F+D +I+HV
Sbjct: 66 AYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVE 125
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAAL---EKIQQ 228
G VDP D+ +I EL+ D + +EK +E L+K ++ + + + ++ + Q
Sbjct: 126 GDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQY 185
Query: 229 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 288
+P R ++ E + I L LLT KP+IY+ N++E D N ++ ++
Sbjct: 186 LTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQ-KNKYLPKIKKWID 244
Query: 289 DLQSGR--VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 338
+ G + +S E LT EE +E L +S L +I + Y+ L
Sbjct: 245 ENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNT-KSMLPKIIVTGYNAL 295
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 213 bits (542), Expect = 1e-66
Identities = 74/314 (23%), Positives = 119/314 (37%), Gaps = 27/314 (8%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-AVPDPRLHVLSGLSKS 115
+ G+VG PNVGKST F+A + AN+PF TIE NVG+ A+ D L
Sbjct: 1 MEIGVVGKPNVGKSTFFSAAT-LVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNP 59
Query: 116 QKA------VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE-DNDIV 168
Q V+ VD+AGLV GA +G GLGNKFL +R +++ VV +
Sbjct: 60 QNYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEG 119
Query: 169 HVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKEDAEKAAL 223
DP D++ + E+ + + K +K K +S
Sbjct: 120 QPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNE 179
Query: 224 EKIQQALMD-GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 282
+ +A+ P + + + KP++ AN AD S+ +
Sbjct: 180 NDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANK-----ADAASDEQIKR 234
Query: 283 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL---- 338
++ + SA E L + +EY+ L ++ L
Sbjct: 235 LVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGAS-EFKVLRDMSEKQKRALMVIK 293
Query: 339 --GLRTYFTSGEKE 350
L + ++G +E
Sbjct: 294 EKVLDRFGSTGVQE 307
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 159 bits (404), Expect = 5e-49
Identities = 55/85 (64%), Positives = 66/85 (77%)
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L+TYFT+G KE +AWT+ G TAP+AA VIH+DFEKGFIRAE +AY+DF+ A+E
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKE 60
Query: 400 KGLLRSEGKDYIVQEGDVMLFRFNV 424
G R EGKDYIVQ+GDVM FRFNV
Sbjct: 61 AGKWRLEGKDYIVQDGDVMHFRFNV 85
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 146 bits (371), Expect = 3e-44
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 340 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
L YFT GE E ++WTIR G APQAAGVIH+DFEK F+ E + Y D + A R
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRA 60
Query: 400 KGLLRSEGKDYIVQEGDVMLFR 421
G ++GK+Y+++ GD+ ++
Sbjct: 61 AGKYLTKGKEYVMESGDIAHWK 82
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 88.1 bits (217), Expect = 5e-21
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 32/180 (17%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG P+VGKSTL + V + K + A++ F T+ PN+G+V D R
Sbjct: 5 GLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDDGR-------------- 49
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
S D+ GL++GA QG GLG++FL HI I+ V+ + +
Sbjct: 50 --SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTIN-- 105
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKPARSV 239
++ + +L + +K+ LE ++ L D P +
Sbjct: 106 -------------QELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPI 152
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 78.9 bits (193), Expect = 6e-18
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
G+VG PN GKS+L A+ + A +PF T+ PN+G+V V +
Sbjct: 5 GLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSEEE-------------- 49
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169
DI G+++GAS+G+GLG +FL HI +L V+ ++
Sbjct: 50 --RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTL 97
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 55.8 bits (133), Expect = 5e-10
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LR IVG PNVGKSTL N ++ +A + P T + + + +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRI-------- 52
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169
V+ + + G+ + L I + D +L V+ D
Sbjct: 53 ------VDTAGVRSETNDLVERLGI-ERTLQEIEKADIVLFVLDASSPLDEED 98
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 50.1 bits (118), Expect = 7e-08
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95
S +I+ +++ IVG PNVGKSTLFNA++ +A + P T +P
Sbjct: 1 SKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPV 47
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 46.7 bits (109), Expect = 7e-07
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95
IVG PNVGKSTLFN +V+ KA + T +P
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPV 39
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 45.5 bits (106), Expect = 2e-06
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97
IVG PNVGKSTL N ++ + + T VG
Sbjct: 9 AIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVG 46
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 45.1 bits (105), Expect = 2e-06
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH 107
++ I G PN GKS+L NA+ A + T + + + LH
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLH 52
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 45.1 bits (105), Expect = 3e-06
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95
G NVGKSTL + K + P T +
Sbjct: 4 IFAGRSNVGKSTLIYRLT-GKKVRRGKRPGVTRKII 38
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 44.7 bits (104), Expect = 4e-06
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH 107
IVG PNVGKSTL N ++ A + P T + GI+ ++
Sbjct: 9 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIV 56
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 40.6 bits (94), Expect = 2e-04
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99
+ SL ++G VGKS+ N+++ + F P +
Sbjct: 27 QEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR 75
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 38.6 bits (88), Expect = 6e-04
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 47 FSSASKIS-----MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV 101
SA I + G N GKS+ N + N K+ A + + V
Sbjct: 2 VMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT-NQKSLARTSKTPGRTQLINLFEV 60
Query: 102 PDPRLHVL 109
D + V
Sbjct: 61 ADGKRLVD 68
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 38.1 bits (87), Expect = 0.001
Identities = 20/175 (11%), Positives = 51/175 (29%), Gaps = 6/175 (3%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
I G N GK++L + + P + + + ++ +
Sbjct: 8 IAGPQNSGKTSLLTLLT-TDSVR----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYK 62
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
S A VKG + ++ ++ E + ++ + +
Sbjct: 63 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA-CNKS 121
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
++ D +E ++K+ + + K ++ E+ E L
Sbjct: 122 ELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDG 176
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.4 bits (85), Expect = 0.001
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPN 95
+ G NVGKS+ N+++ A+ ++ P T N
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.6 bits (83), Expect = 0.002
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 8/38 (21%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98
+GL N GK+TL + + + T++P
Sbjct: 5 FLGLDNAGKTTLLHMLKND--------RLATLQPTWHP 34
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 36.9 bits (84), Expect = 0.002
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
VGL + GK+ LF ++ +I + I V
Sbjct: 5 FVGLCDSGKTLLFVRLLTGQYRDT----QTSITDSSAIYKVN 42
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 35.8 bits (81), Expect = 0.004
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+GL GK+T+ +
Sbjct: 10 ILGLDGAGKTTILYRLQVG 28
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 35.2 bits (80), Expect = 0.010
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT 91
++RA I+G+PNVGKSTL N + + A+ + P T
Sbjct: 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGIT 147
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 34.3 bits (77), Expect = 0.012
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VGL GK+T N +
Sbjct: 7 LVGLQYSGKTTFVNVIASG 25
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 76
Score = 32.0 bits (73), Expect = 0.019
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 18/78 (23%)
Query: 341 RTYFTS-GEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 399
G + ++ G T A +H+D KGF+ A
Sbjct: 10 NKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL-----------------YAIN 52
Query: 400 KGLLRSEGKDYIVQEGDV 417
R G+DY +Q D+
Sbjct: 53 ARTKRRVGEDYELQFNDI 70
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 33.5 bits (75), Expect = 0.019
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++GL N GK+T+
Sbjct: 7 MLGLDNAGKTTILKKFNGE 25
>d1ryka_ a.60.11.1 (A:) Hypothetical protein YjbJ {Escherichia coli
[TaxId: 562]}
Length = 69
Score = 31.6 bits (72), Expect = 0.021
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 186 ELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAA 222
+L D+ IE + ++L GK ++ K+ AEK
Sbjct: 23 KLTDDDMTIIEGKRDQL-VGKIQERYGYQKDQAEKEV 58
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 34.4 bits (78), Expect = 0.021
Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 24/203 (11%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L + G GKS+ N + G + +E + P +
Sbjct: 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIP--------- 107
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVV-RCFEDNDIVHVNGKVD 175
+V F D+ G+ + K E D + + F+ NDI
Sbjct: 108 -----NVVFWDLPGIGSTNFPPDTYLEKM--KFYEYDFFIIISATRFKKNDIDIAKAISM 160
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALMDGKP 235
K V + +D + + K+ +D + ++ + P
Sbjct: 161 MK-----KEFYFVRTKVDSDITNEADGEPQ--TFDKEKVLQDIRLNCVNTFRENGIAEPP 213
Query: 236 ARSVTLNDFERDSIKQLCLLTMK 258
++ + L +
Sbjct: 214 IFLLSNKNVCHYDFPVLMDKLIS 236
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 33.5 bits (75), Expect = 0.022
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79
++++ +VG VGKS++ +
Sbjct: 1 VAIKMVVVGNGAVGKSSMIQRYCKG 25
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.4 bits (75), Expect = 0.024
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 45 RRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVEN 79
R+ SA +R ++GL N GK+TL +
Sbjct: 7 RKLKSAPD--QEVRILLLGLDNAGKTTLLKQLASE 39
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 33.1 bits (74), Expect = 0.029
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VGL GK+T+ +
Sbjct: 5 MVGLDAAGKTTILYKLKLG 23
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.034
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 61 IVGLPNVGKSTLFNAVVE 78
+VGLP GK+ + +
Sbjct: 7 MVGLPARGKTYISKKLTR 24
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 32.4 bits (72), Expect = 0.056
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNV 96
GI G + GK+TL + E A + + + +
Sbjct: 9 GIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGI 45
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 32.3 bits (72), Expect = 0.071
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
IVGL N GK+T+ N
Sbjct: 20 IVGLDNAGKTTILYQFSMN 38
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.9 bits (71), Expect = 0.071
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQ 83
GK+TL ++ A+
Sbjct: 6 AFAAWSGTGKTTLLKKLIPALCAR 29
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.0 bits (71), Expect = 0.081
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+GL N GK+TL + + ++
Sbjct: 18 FLGLDNAGKTTLLHMLKDD 36
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 32.1 bits (72), Expect = 0.12
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR 105
+LR G+ G P GKST A + ++P+ +
Sbjct: 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG 103
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 31.2 bits (69), Expect = 0.13
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+G VGK++L + V +
Sbjct: 7 ILGDSGVGKTSLMHRYVND 25
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.4 bits (70), Expect = 0.15
Identities = 19/153 (12%), Positives = 47/153 (30%), Gaps = 15/153 (9%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDP--RLHVLSGLSKSQK 117
++G GKST + + T + R+ + G ++
Sbjct: 7 LLGTGESGKSTFIKQMRII------HGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERR 60
Query: 118 AVPASVEFVDIAGLVKGASQGEGLG------NKFLSHIREVDSILQVVRCFEDNDIVHVN 171
E V + S+ + + N+ +I+ + I+ +N
Sbjct: 61 KWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN 120
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204
K + + +L F + D ++ + ++
Sbjct: 121 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE 153
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 31.2 bits (69), Expect = 0.15
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+G VGK++L N V
Sbjct: 7 ILGDSGVGKTSLMNQYVNK 25
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 30.8 bits (68), Expect = 0.20
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVEN 79
S++ ++G VGKS++ V N
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSN 26
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 30.4 bits (68), Expect = 0.20
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 117 KAVPASVEFVDIAGLVKGASQ-GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+AV + I +V+ + +L + V E ++ + +
Sbjct: 28 RAVDLIQKHKSIEEIVRRLDPNKYPVPENWLHKEAHQLFLEPEVLDPESVELKW--SEPN 85
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKE 216
+ + + E FS+ ++I +++L K + +Q +L +
Sbjct: 86 EEELIKFMCGEKQFSE-ERIRSGVKRLSKSRQGSTQGRLDD 125
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 30.6 bits (68), Expect = 0.23
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+G +VGK++ ++
Sbjct: 10 IIGNSSVGKTSFLFRYADD 28
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 30.2 bits (67), Expect = 0.32
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+G VGKS+L ++
Sbjct: 12 IIGESGVGKSSLLLRFTDD 30
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.8 bits (66), Expect = 0.33
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQ 83
+VG + GK+TL V +
Sbjct: 5 QVVGYKHSGKTTLMEKWVAAAVRE 28
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b,
N-terminal (G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 30.0 bits (66), Expect = 0.40
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 55 MSLRA---GIVGLPNVGKSTLFNAVVENGKA 82
M +R+ ++G + GK+TL + + + A
Sbjct: 1 MKIRSPIVSVLGHVDHGKTTLLDHIRGSAVA 31
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 29.9 bits (66), Expect = 0.42
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G GKS L + +E
Sbjct: 10 VIGNAGTGKSCLLHQFIEK 28
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.6 bits (65), Expect = 0.49
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G NVGK+ L
Sbjct: 7 VIGDSNVGKTCLTYRFCAG 25
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 29.3 bits (65), Expect = 0.49
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGK+ + E+
Sbjct: 11 LIGDSGVGKTCVLFRFSED 29
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 29.5 bits (65), Expect = 0.54
Identities = 15/130 (11%), Positives = 38/130 (29%), Gaps = 11/130 (8%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV----LSGLSKSQ 116
+VG VGK+ L + I+ ++ V ++ + +G + +
Sbjct: 11 LVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 70
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
A L+ + S + ++ + + + + G
Sbjct: 71 SVTHAYYRDAHALLLLYDVTNKA-------SFDNIQAWLTEIHEYAQHDVALMLLGNKVD 123
Query: 177 KSDVDVINLE 186
+ V+ E
Sbjct: 124 SAHERVVKRE 133
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.5 bits (65), Expect = 0.55
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS L + N
Sbjct: 9 LIGDSGVGKSNLLSRFTRN 27
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.4 bits (65), Expect = 0.55
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS L VE+
Sbjct: 7 LIGDSGVGKSCLLVRFVED 25
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.4 bits (65), Expect = 0.61
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGK+ L +
Sbjct: 10 LIGNAGVGKTCLVRRFTQG 28
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 29.2 bits (64), Expect = 0.62
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS++ VE+
Sbjct: 9 LLGDTGVGKSSIMWRFVED 27
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 29.5 bits (65), Expect = 0.63
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+G VGK+T +N
Sbjct: 10 ALGDSGVGKTTFLYRYTDN 28
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 120
Score = 28.3 bits (63), Expect = 0.69
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 23/114 (20%)
Query: 124 EFVDIAGLVKGASQGE----GLGNK----FLSHIREVDSILQVVRCFEDNDIVHV--NGK 173
+ +++A LV G G+G K + H ++ + Q + I N
Sbjct: 5 KLIELAILV-GTDYNPGGIKGIGLKKALEIVRHSKDPLAKFQKQSDVDLYAIKEFFLNPP 63
Query: 174 VDP-------KSDVDVINLELV----FSDLDQIEKRMEKLKKGKAKDSQSKLKE 216
V D + I L FS+ ++++ +E+LKK QS L+
Sbjct: 64 VTDNYNLVWRDPDEEGILKFLCDEHDFSE-ERVKNGLERLKKAIKSGKQSTLES 116
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 28.2 bits (63), Expect = 0.69
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 192 LDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQAL 230
+D EK+ LK +D + + EK ++ + L
Sbjct: 63 VDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFL 101
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 29.2 bits (64), Expect = 0.73
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 57 LRAGIVGLPNVGKSTLFNAVV 77
++ I G P VGK+TL +V
Sbjct: 1 MKIIITGEPGVGKTTLVKKIV 21
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.84
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G P VGKS L
Sbjct: 6 LLGAPGVGKSALARIFGGV 24
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 28.8 bits (63), Expect = 0.84
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++GL GK+T+ +
Sbjct: 17 MLGLDAAGKTTILYKLKLG 35
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.87
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+ G VGKS+L V+
Sbjct: 7 VFGAGGVGKSSLVLRFVKG 25
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.9 bits (63), Expect = 0.87
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG GK+T +
Sbjct: 8 LVGDGGTGKTTFVKRHLTG 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.5 bits (62), Expect = 0.90
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79
S S + I+G +VGKS+L VE
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEG 27
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 28.8 bits (63), Expect = 0.91
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 61 IVGLPNVGKSTLFN 74
I+GL GK+T+
Sbjct: 22 ILGLDGAGKTTILY 35
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 28.7 bits (63), Expect = 0.95
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG VGKS L + +
Sbjct: 9 MVGSGGVGKSALTLQFMYD 27
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.5 bits (62), Expect = 0.98
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG VGKS L +++
Sbjct: 11 VVGGGGVGKSALTIQFIQS 29
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 28.7 bits (63), Expect = 1.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS L ++
Sbjct: 11 LIGNSGVGKSCLLLRFSDD 29
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.7 bits (63), Expect = 1.1
Identities = 19/168 (11%), Positives = 57/168 (33%), Gaps = 14/168 (8%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV--LSGLSKSQKA 118
++G GKST + T + + + + + G +K
Sbjct: 7 LLGAGESGKSTFLKQMRIIHGQDP------TKGIHEYDFEIKNVPFKMVDVGGQRSERKR 60
Query: 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIR------EVDSILQVVRCFEDNDIVHVNG 172
+ V + +S+ + + + R ++I+ + I+ +N
Sbjct: 61 WFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNK 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEK 220
+ V V++++ F + + + ++K + + K ++ ++
Sbjct: 121 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQR 168
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 28.3 bits (62), Expect = 1.1
Identities = 21/163 (12%), Positives = 49/163 (30%), Gaps = 22/163 (13%)
Query: 61 IVGLPNVGKSTLFNAVVEN---GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117
I+G VGKS L + ++ +G +
Sbjct: 8 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS 67
Query: 118 AVPASVEFVDIAGLVKGASQGEGLGN--KFLSHIREVDS---ILQVVRCFEDNDIVHVNG 172
+ A LV ++ E + +L R+ S ++ ++ D +
Sbjct: 68 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK 127
Query: 173 KVDPK-------------SDVDVINLELVFSDL-DQIEKRMEK 201
+ + + S N+E F + +I +++++
Sbjct: 128 REEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.5 bits (62), Expect = 1.2
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFC 90
+ GL GK+T+ A+ E
Sbjct: 24 LTGLSGAGKTTVSMALEEYLVCHGIPCYTL 53
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 1.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS+L V+
Sbjct: 11 LLGESAVGKSSLVLRFVKG 29
>d1ka1a_ e.7.1.1 (A:) 3';5'-adenosine bisphosphatase, PAP
phosphatase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 354
Score = 28.9 bits (63), Expect = 1.3
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 348 EKETKAWTIRAGMTAPQAAGVIHSDFEKG----FIRAETVAYDDFVAAGSLAAAREK 400
+ K W AG AG IH+D + F T+A +A+ +
Sbjct: 286 SYQEKIWDHAAGNVIVHEAGGIHTDAMEDVPLDFGNGRTLATKGVIASSGPRELHDL 342
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 28.2 bits (61), Expect = 1.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKSTL N
Sbjct: 8 LIGEQGVGKSTLANIFAGV 26
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 28.0 bits (61), Expect = 1.3
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+G +VGK++L + +
Sbjct: 5 FLGEQSVGKTSLITRFMYD 23
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 28.1 bits (61), Expect = 1.4
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN 95
+ G N GK + A+ Q +
Sbjct: 11 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 45
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGK++L EN
Sbjct: 8 LLGEGCVGKTSLVLRYCEN 26
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.0 bits (61), Expect = 1.4
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79
++ L+ +VG VGK+ L + +
Sbjct: 7 ALMLKCVVVGDGAVGKTCLLMSYAND 32
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.9 bits (61), Expect = 1.5
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I+G VGKS L + E
Sbjct: 9 IIGDMGVGKSCLLHQFTEK 27
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.0 bits (61), Expect = 1.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS+L N V N
Sbjct: 11 LLGDGGVGKSSLMNRYVTN 29
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 27.6 bits (60), Expect = 1.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG VGKS L +++N
Sbjct: 8 VVGAGGVGKSALTIQLIQN 26
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 1.8
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
IVG GK+ L ++
Sbjct: 7 IVGDGACGKTCLLIVNSKD 25
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 27.9 bits (61), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVEN 79
++R GI G+P VGKST +A+
Sbjct: 51 AIRVGITGVPGVGKSTTIDALGSL 74
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 27.7 bits (60), Expect = 2.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG VGK+ L + N
Sbjct: 10 VVGDGAVGKTCLLISYTTN 28
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 27.3 bits (59), Expect = 2.3
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
I G VGKS L +
Sbjct: 7 IFGRAGVGKSALVVRFLTK 25
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 2.4
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVEN 79
+++ +VG VGK+ L + N
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTN 26
>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor
(GC-SF) receptor, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 94
Score = 26.3 bits (58), Expect = 2.6
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 224 EKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAE 268
QQ L DG +TL C L + + + E
Sbjct: 47 GGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVE 91
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 27.6 bits (60), Expect = 2.6
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G GKST+ +
Sbjct: 7 LLGAGESGKSTIVKQMKII 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.2 bits (59), Expect = 2.6
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G VGKS L V
Sbjct: 8 VLGSGGVGKSALTVQFVTG 26
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.8 bits (60), Expect = 2.6
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 47 FSSASKISMSLRAG---IVGLPNVGKSTLFNAV 76
F S S + + G I+G GKS+L +A+
Sbjct: 11 FRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAI 43
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 27.3 bits (59), Expect = 2.7
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG GK+ L + ++
Sbjct: 7 VVGDSQCGKTALLHVFAKD 25
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 27.4 bits (59), Expect = 2.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTI 92
+VG GKST+ + AQ N F
Sbjct: 7 LVGPMGAGKSTIGRQL-----AQQLNMEFYDS 33
>d1u2ma_ f.48.1.1 (A:) Periplasmic chaperon skp (HlpA) {Escherichia
coli [TaxId: 562]}
Length = 143
Score = 26.9 bits (59), Expect = 2.8
Identities = 7/50 (14%), Positives = 19/50 (38%)
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEDAEKAALEKIQQALM 231
++N+ +F + Q L+ + + + + A K Q++
Sbjct: 8 IVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMK 57
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 3.0
Identities = 17/171 (9%), Positives = 40/171 (23%), Gaps = 8/171 (4%)
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
+ G P GK++L +A+ + I + P L L +
Sbjct: 37 LGGQPGSGKTSLRSAI-----FEETQGNVIVI--DNDTFKQQHPNFDELVKLYEKDVVKH 89
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
+ + + +G R D +Q + +
Sbjct: 90 VTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKIN 149
Query: 181 DVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKEDAEKAALEKIQQAL 230
+ + + + + K L + E + +
Sbjct: 150 SYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDI 200
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.3 bits (59), Expect = 3.0
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
+ G P VGK+TL + E K+ E + LSG
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSG 56
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 27.2 bits (60), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 53 ISMSLRAG----IVGLPNVGKSTLFNAV 76
+S+S+ G I+G GKSTL N +
Sbjct: 23 VSISVNKGDVTLIIGPNGSGKSTLINVI 50
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 27.0 bits (59), Expect = 3.3
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
++G GKST+ +
Sbjct: 11 LLGAGESGKSTIVKQMRIL 29
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 26.9 bits (58), Expect = 3.4
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 61 IVGLPNVGKSTLFNAVVEN 79
+VG VGKS L +++
Sbjct: 10 VVGGGGVGKSALTIQFIQS 28
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.8 bits (59), Expect = 4.4
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 53 ISMSLRAG----IVGLPNVGKSTLFNAV 76
I + + G ++G GK+T +A+
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAI 52
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 26.5 bits (58), Expect = 5.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 53 ISMSLRAG-IVGL--PN-VGKSTLFNAV 76
IS + G I GL PN GK+T +
Sbjct: 21 ISFEIEEGEIFGLIGPNGAGKTTTLRII 48
>d1ynha1 d.126.1.7 (A:3-441) Succinylarginine dihydrolase
{Escherichia coli [TaxId: 562]}
Length = 439
Score = 26.6 bits (59), Expect = 6.1
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 226 IQQALMDGK-PA---RSVTLNDFERDSIKQLCLLT------MKPII---YVANVAESDLA 272
+++++ +G PA V L + ER ++ ++ + + Y + +DLA
Sbjct: 351 LRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFNALNDWVDRYYRDRLTAADLA 410
Query: 273 DP 274
DP
Sbjct: 411 DP 412
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 26.2 bits (57), Expect = 6.3
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 53 ISMSLRAG----IVGLPNVGKSTLFNAV 76
+S+ + +G I+G GK+ +
Sbjct: 19 LSLKVESGEYFVILGPTGAGKTLFLELI 46
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 26.4 bits (58), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 51 SKISMSLRAG-IVGL--PN-VGKSTLFNAV 76
+S +RAG I+ L PN GKSTL +
Sbjct: 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARM 45
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 26.3 bits (57), Expect = 7.4
Identities = 13/102 (12%), Positives = 22/102 (21%), Gaps = 4/102 (3%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFP----FCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+ G GKS + + + + +L S+
Sbjct: 48 FLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSED 107
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQ 157
SVE V L + L +V
Sbjct: 108 DLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET 149
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 25.8 bits (55), Expect = 8.2
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 61 IVGLPNVGKSTLFNAVVE 78
+ G + GKS + +
Sbjct: 8 LNGGSSAGKSGIVRCLQS 25
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 25.7 bits (56), Expect = 9.2
Identities = 11/93 (11%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 148 HIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK------ 201
V+ + D + + D + + + E + E+
Sbjct: 74 MSPAVEKAIM----ASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVR 129
Query: 202 ------LKKGKAKDSQSKLKEDAEKAALEKIQQ 228
K KA ++ ED ++ + + +Q+
Sbjct: 130 NVRRDANDKVKALLKDKEISEDDDRRSQDDVQK 162
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 25.7 bits (56), Expect = 9.2
Identities = 15/99 (15%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 53 ISMSLRAG----IVGLPNVGKSTLFNAV-----VENGKAQAANFPFCTIEPNVGIV---A 100
I+M++ G G +GK+TL + G+ P ++ + +
Sbjct: 20 ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79
Query: 101 VPDPRLHV---------LSGLSKSQKAVPASVEFVDIAG 130
+ ++ V L G+ ++ + ++E V++
Sbjct: 80 IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 25.8 bits (56), Expect = 9.5
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 53 ISMSLRAG----IVGLPNVGKSTLFNAV 76
+++++ G I+G GK+T +
Sbjct: 24 VNINIENGERFGILGPSGAGKTTFMRII 51
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 25.7 bits (56), Expect = 10.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 198 RMEKLKKGKAKDSQSKLKEDAEKAALEKIQQ 228
R E LKK K + + ED K +IQ+
Sbjct: 131 RREILKKIKEDQKEGLIPEDDAKRLENEIQK 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.362
Gapped
Lambda K H
0.267 0.0387 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,448,279
Number of extensions: 66284
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 120
Length of query: 424
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,199,356
Effective search space: 402983616
Effective search space used: 402983616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.5 bits)