Query 014451
Match_columns 424
No_of_seqs 133 out of 688
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2262 Sexual differentiation 100.0 4E-137 9E-142 1079.2 26.8 379 46-424 45-423 (761)
2 TIGR00727 ISP4_OPT small oligo 100.0 4E-126 1E-130 1023.1 33.3 374 49-423 1-377 (681)
3 TIGR00728 OPT_sfam oligopeptid 100.0 1.2E-77 2.7E-82 647.7 30.1 344 55-423 1-349 (654)
4 PF03169 OPT: OPT oligopeptide 100.0 3.6E-69 7.8E-74 578.3 17.9 324 71-422 1-327 (624)
5 TIGR00733 putative oligopeptid 98.4 4.5E-06 9.8E-11 90.9 14.9 221 72-339 2-226 (591)
6 COG1297 Predicted membrane pro 88.4 1.9 4.1E-05 47.5 8.5 167 68-259 11-179 (624)
7 TIGR02106 cyd_oper_ybgT cyd op 42.2 28 0.00061 24.0 2.5 18 76-93 5-22 (30)
8 TIGR03141 cytochro_ccmD heme e 40.6 58 0.0012 23.9 4.2 29 390-418 6-35 (45)
9 PF08173 YbgT_YccB: Membrane b 39.8 33 0.00071 23.3 2.5 18 76-93 5-22 (28)
10 PF04995 CcmD: Heme exporter p 37.4 75 0.0016 23.3 4.4 29 390-418 5-34 (46)
11 PRK14749 hypothetical protein; 37.3 38 0.00082 23.3 2.5 18 76-93 5-22 (30)
12 PF11166 DUF2951: Protein of u 30.1 45 0.00097 28.8 2.5 17 74-90 72-88 (98)
13 COG4890 Predicted outer membra 21.6 99 0.0022 22.1 2.5 19 76-94 5-23 (37)
No 1
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-137 Score=1079.22 Aligned_cols=379 Identities=60% Similarity=1.095 Sum_probs=372.3
Q ss_pred cccccCChhHhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCC
Q 014451 46 VEEEENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTD 125 (424)
Q Consensus 46 ~~~~~~SPy~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~ 125 (424)
.+++|||||||||++||++|||++|++|||||+||+++|+++|++||||++|+|+++|+.+++|+++||+||+|||+||+
T Consensus 45 ~ed~~~spv~EVrl~Vp~tDDptlPv~TfRmW~Lg~~~~iv~a~vNqFF~~R~~~lsis~i~aQi~~~PlGklma~~lP~ 124 (761)
T KOG2262|consen 45 LEDEEDSPVPEVRLTVPPTDDPTLPVLTFRMWFLGLISCIVLAFVNQFFSYRYPPLSISAIVAQIATYPLGKLMAKTLPT 124 (761)
T ss_pred ccccccCcchhheeecCCCCCCCchhHhHHHHHHHHHHHHHHHHHhhhhcccCCCeehHHHHHHHHHHhHHHHHHHhCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCceeeecCCCCCcccceeeeehhccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhHhhhcccc
Q 014451 126 RVFFKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRY 205 (424)
Q Consensus 126 ~~~~~~~~~~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQliGyGlAGllRrf 205 (424)
|++.-+++|+|+|||||||+|||++|||+||++++++||+++|.+|+.|||+++++++++|++++||++|||+|||+||+
T Consensus 125 ~~~~~~~~~~fslNPGPFn~KEHvlitIfan~~sg~aYat~Ii~~~k~fY~~~l~f~~~~ll~lttQ~lGyGwAGl~Rk~ 204 (761)
T KOG2262|consen 125 WKFGLGGRWSFSLNPGPFNVKEHVLITIFANIGSGTAYATHIITAQKAFYKRNLSFGYAFLLVLTTQLLGYGWAGLFRKY 204 (761)
T ss_pred eeeecCcceEEEeCCCCCcchheeeeehhhhccCcchhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhcccHhhhhHhh
Confidence 99832788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCccCCchhHHHHHHHHhhhcccCCCCCcccchhhhHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEec
Q 014451 206 LVEPAAMWWPANLVQVSLFRALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVG 285 (424)
Q Consensus 206 LVyPa~miWP~~L~~vaL~~aLh~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lf 285 (424)
||||++|+||++|++|+||||||++|++.+.++||+|||+++|+++|+|||||+||||+||+|||+|||.|+|++++|||
T Consensus 205 lV~Pa~m~WPsnLvqvsLFraLHeke~~~~g~msR~rFF~ivfv~SFiyY~fPgylF~~Ls~~swvcW~~P~s~~~~qi~ 284 (761)
T KOG2262|consen 205 LVYPASMWWPSNLVQVSLFRALHEKENKSKGNMSRYRFFLIVFVASFIYYWFPGYLFPILSSFSWVCWIWPSSITANQIG 284 (761)
T ss_pred ccCcHhhcCcchhHHHHHHHHHHhhhhhcccCccchhhhhHHHHHHHHHHHhhHHHHHHHhhhheeeEeccccHHHHHhc
Confidence 99999999999999999999999999988877999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCceeecc
Q 014451 286 SGLYGLGVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNIT 365 (424)
Q Consensus 286 Gg~~GLGl~p~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~~i~~~ii~p~lYy~N~w~s~ylPi~S~~lfd~~G~~Ynvs 365 (424)
||.+|||++|+||||++|++|++|||++||||++|+++|+++++||++|++||+|+|+++||||+|+++||++|++||++
T Consensus 285 sg~~GLGi~~~tlDW~~IssylgSPLasP~~a~~n~~~gfvl~~~IV~Pi~Y~~n~~~a~~fPI~Ss~lf~~tG~sYnvt 364 (761)
T KOG2262|consen 285 SGLTGLGIGPFTLDWSQISSYLGSPLASPFFAIANVFLGFVLFIYIVLPILYWTNTYDAKYFPIFSSSLFDHTGNSYNVT 364 (761)
T ss_pred ccccccccccccccHHHHHHHcCCcchhhHHHHHHHhhhhhhhhhhhhhhHhhccceecceeceecCcceecCCcEecee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCccCHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhhhcC
Q 014451 366 AIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGRYAFLHFVDR 424 (424)
Q Consensus 366 ~Il~~~~~ld~~aY~~ysppyls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~~ 424 (424)
||||+|++||.+|||+|||+|||+.|+++||++||+++|+|+|++||||||||+++|++
T Consensus 365 ~Il~~~f~ld~~~Y~~ysp~yls~~falsygl~faa~~a~i~Hv~Lf~gkdiw~~~~~~ 423 (761)
T KOG2262|consen 365 KILDSKFELDLDKYQEYSPLYLSTFFALSYGLGFAALSATIVHVALFNGKDIWQQTKKA 423 (761)
T ss_pred eeecCccccchHHHhhcCCcceeHHHHHHHHHHHHHHHHHhhhheeeccHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998864
No 2
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=100.00 E-value=4.5e-126 Score=1023.13 Aligned_cols=374 Identities=34% Similarity=0.661 Sum_probs=362.9
Q ss_pred ccCChhHhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCCcee
Q 014451 49 EENSPVKQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVF 128 (424)
Q Consensus 49 ~~~SPy~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~~~~ 128 (424)
||||||||||++|+++|||++|++|||+|+||++++++++++||+|++|+|+++++++++||++||+||+|||+||+|++
T Consensus 1 ~~~spypeVr~~v~~~DDp~~p~~TfRa~~lG~~l~~i~s~in~~f~lR~p~i~is~~~~qll~yp~Gk~~a~~lP~~~~ 80 (681)
T TIGR00727 1 EFDSPYPEVRAAVPPTDDPTIPVNTIRAWFIGLIWSTVGSGFNMFFSHRVPSISLNTPIIQMLAYPCGKAWAKIIPDWTI 80 (681)
T ss_pred CCCCcchhhhhcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ecCCCceeeecCCCCCcccceeeeehhccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhhHhhhcccceec
Q 014451 129 FKSTPLEFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVE 208 (424)
Q Consensus 129 ~~~~~~~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQliGyGlAGllRrfLVy 208 (424)
+.++++|+|||||||+|||++|+||||++.+.+|+++++.+|++|||++++++++|++++|+|++|||+||++||++||
T Consensus 81 -~~~g~~~~lNPGPF~~KEh~liti~a~~~~~~~y~~~~i~~~~~fy~~~~~~g~~il~~lstq~~G~g~Ag~lRr~lV~ 159 (681)
T TIGR00727 81 -TIRGRKYNIIPGPFNVKEHMFITLMYAVSFGAAYTTDIILAQKLFYKSAFGFGYQFLLSLSTQFIGFGFAGILRRFVVY 159 (681)
T ss_pred -ccccceeccCCCCCChhcceeeeeeeehhccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhceEec
Confidence 3334679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCchhHHHHHHHHhhhcccC--CCCCcccchhhhHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecc
Q 014451 209 PAAMWWPANLVQVSLFRALHEREKR--ASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGS 286 (424)
Q Consensus 209 Pa~miWP~~L~~vaL~~aLh~~~~~--~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfG 286 (424)
|++|+||++|++++|+|+||+++++ ++|++||+|||+++|+++|+|+|+|+||||+||+|||+|||+|||+++|||||
T Consensus 160 p~~~iwPs~L~t~aL~~aLH~~~~~~~~gw~~sr~kfF~~~f~~sfvw~w~P~ylf~~Ls~f~w~cwi~P~n~~~~~i~g 239 (681)
T TIGR00727 160 PARALWPTNLVTITINKALHGKENHEANGWKISRYKFFFLVFFASFIWNWFPTYIFQALSTFNWMTWIKPNNINLNQIFG 239 (681)
T ss_pred cccCcCCCccHHHHHHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhccCcchhhhhhhc
Confidence 9999999999999999999986643 34779999999999999999999999999999999999999999999999999
Q ss_pred cccCccccc-cccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCceeecc
Q 014451 287 GLYGLGVAA-VGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNIT 365 (424)
Q Consensus 287 g~~GLGl~p-~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~~i~~~ii~p~lYy~N~w~s~ylPi~S~~lfd~~G~~Ynvs 365 (424)
|.+|||++| +|||||+|+++.+|||++|+|+++|+++|+++++||++|++||+|+|+++||||+|+++|||+|++||+|
T Consensus 240 ~~~GlGl~p~~tfDW~~I~~~~~spL~~P~~a~~n~~~G~~l~~~ii~P~lyy~N~w~~~~lPi~s~~~fd~~G~~Y~vs 319 (681)
T TIGR00727 240 GSTGLGINPISSFDWNQISGYINSPLVYPAWSYLTIYLGCILAFWIVIPAVYYSNTWYCQYLPISSNGLYDNFGHSYNVT 319 (681)
T ss_pred cccCCCcCCcCcccHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCccchhhhcCCCccccc
Confidence 999999999 8999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCCCccCHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhhhc
Q 014451 366 AIIDSNFHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGRYAFLHFVD 423 (424)
Q Consensus 366 ~Il~~~~~ld~~aY~~ysppyls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~ 423 (424)
||||+|++||++|||||||||+|++|+++||++||+++|+++|++||||||||+++|+
T Consensus 320 ~il~~~~~ld~~~y~~ysp~~l~~~~al~yg~~fA~~~a~i~h~~l~~~~~i~~~~~~ 377 (681)
T TIGR00727 320 EILDKDNKFDVKKYQSYSPPFYSTTNAVSYGLSFASIPLMITHSIIVHGKLLFNALKD 377 (681)
T ss_pred eeeCCCCcCCHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999985
No 3
>TIGR00728 OPT_sfam oligopeptide transporters, OPT superfamily. Homology between the two branches of the superfamily is seen most easily at the ends of the protein. The central regions are poorly conserved within each branch and may not be homologous between branches.
Probab=100.00 E-value=1.2e-77 Score=647.66 Aligned_cols=344 Identities=38% Similarity=0.618 Sum_probs=322.8
Q ss_pred HhHhhccCCCCCCCCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCCceeecCCCc
Q 014451 55 KQVALTVSTEDDTCLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPL 134 (424)
Q Consensus 55 ~eVra~v~~~DDp~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~~~~~~~~~~ 134 (424)
||||+ ||++|||++|++|||+|++|++++++++++||+|.+|++.++++++++||++||+||+|+|+||+|+ ++
T Consensus 1 ~~vra-v~~~ddp~~~~~T~Ra~~lG~i~~~v~~~~n~~~~lr~g~~~~~si~~~ll~~~~g~~~~~~lP~~~-----~~ 74 (654)
T TIGR00728 1 QEVRA-VPPTDDPSLPVITFRAWFLGILIGVVFAGVNQFFGLRTGSVSISSIVAALLAYPLGKLWALIIPDWE-----GW 74 (654)
T ss_pred Ccccc-CCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHhcCCcc-----cc
Confidence 59999 9999999999999999999999999999999999999999999999999999999999999999987 36
Q ss_pred eeeecCCCCCcccceeeeehhccCCcchhHHHHHHHHHHHhcccchHHHHHHHHHHHhh--hhhhHhhhcccceecCCCc
Q 014451 135 EFTLNPGPFNVKEHVLITIFANSGAGSVYAIHIVTVVKVFYKQHFTFFVSLLVVFTTQV--LGFGWAGIFRRYLVEPAAM 212 (424)
Q Consensus 135 ~f~LNPGPFniKEH~litIma~~~~~~aya~~ii~~q~lfy~~~~~~~~~ill~lStQl--iGyGlAGllRrfLVyPa~m 212 (424)
+|+|||||||+|||+++++|||++.+.+++++++.+|++||+++.++++++++++++|+ +|+|+||++||++|+|++|
T Consensus 75 ~~~lnpgpft~kE~~~iq~~asa~~~~~~~~~~i~a~~~~~~~~~~~~~~~l~~~~~~~~~lG~~~a~~lRr~lV~~~~l 154 (654)
T TIGR00728 75 KFSLNPGPFNVKENNLIQTAASACGGLAYAIFILPAQKMFYTSNFSWGYQILLVWSTQLGFLGFGFAGLLRRALVVPAKL 154 (654)
T ss_pred ceecCCCCCChhhheeEEeeeeccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhHHhhHHHhhhheeCcccc
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCchhHHHHHHHHhhhcccCC-CCCcccchhhhHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCc
Q 014451 213 WWPANLVQVSLFRALHEREKRA-SGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGL 291 (424)
Q Consensus 213 iWP~~L~~vaL~~aLh~~~~~~-~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GL 291 (424)
+||+.+++++|+++||++.+.. +++++| +++.+ |.++|+.++.++|+||+.|+++.++ +|| |+
T Consensus 155 ~~P~~la~a~l~~al~~~~~~~~g~~~~r---~l~~~---------~~~~f~~~~~~~~~~~~~p~~~~~~-~fg---gl 218 (654)
T TIGR00728 155 PWPSGLATAELFKALHGKFHTANGDTIAK---NLLRV---------LLKYFSSSFLWSFVSWFFPGFTAFQ-TFG---GL 218 (654)
T ss_pred cCCcccHHHHHHHHhhhccCccCCCccch---hHHHh---------HHHHHHHHHHHHHHHHHhcCCcccc-ccc---cc
Confidence 9999999999999998764433 344555 33222 8899999999999999999988885 555 89
Q ss_pred cccccccchhhhhhhcCCCccccHHHHHHHHHHHHHHHHHHhhhhhhccccCCccccCcchhccccCCceeec-ceeeCC
Q 014451 292 GVAAVGIDWSTISSYLGSPLASPWFATANVAAGFVLVMYVLTPLCYWLNIYNAKTFPIFSDQLFTTTGREYNI-TAIIDS 370 (424)
Q Consensus 292 Gl~p~tfDWn~I~~~~~sPL~~P~~a~~N~~~G~~i~~~ii~p~lYy~N~w~s~ylPi~S~~lfd~~G~~Ynv-s~Il~~ 370 (424)
|++|++|||+++.++.++|+.+|+++++|+++|.+++.|+++|++||+|.|+++++|++|++.||++|.+||. ++|+++
T Consensus 219 g~~~~~f~w~~s~~~~g~gli~p~~~~~~~~~G~vl~~~ii~P~l~~~n~~~~~~~p~~s~~~~~~~~~~y~~~~~il~~ 298 (654)
T TIGR00728 219 GSGSIGFGWQQSSAYIGSGLITPFTVGLNMLLGVILAFGIVLPILYYKNTWPADADPIDSSSTIDSTGVRYNSVGLIVVD 298 (654)
T ss_pred cccccceecHHhHhhcCCCccCCHHHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCcchhhhcCCCceeeeeeEEEeC
Confidence 9999999999997788999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred C-CccCHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhhhc
Q 014451 371 N-FHIDIAAYQREGPLYLSIFFATTYGLGFAALTATIVHVALFHGRYAFLHFVD 423 (424)
Q Consensus 371 ~-~~ld~~aY~~ysppyls~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~~ 423 (424)
+ .++|++||++|||+|++++| |+++||+++++++|++++|+||+++++|+
T Consensus 299 ~~~~l~~~~~~~~s~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 349 (654)
T TIGR00728 299 GLWTLVKPLYPIYSPLVLSIDF---YALLFNAFSDTIYSFALAHGRDIISARRD 349 (654)
T ss_pred CCceecHHHHHHhCcceeeHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 7 79999999999999999999 99999999999999999999999988763
No 4
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=100.00 E-value=3.6e-69 Score=578.34 Aligned_cols=324 Identities=37% Similarity=0.645 Sum_probs=308.5
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCCceeecCCCceeeecCCCCCccccee
Q 014451 71 VLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVL 150 (424)
Q Consensus 71 ~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~l 150 (424)
|+|||+|++|++++++++++||+|.+|++.+.++++++||++||+||+|+| .++++.|||||||+|||++
T Consensus 1 ~lT~Ra~~lG~~~~~l~a~~n~y~~lk~g~~~~~si~~~il~~~~~~~~~~----------~~~~~~ln~gp~~~kE~~~ 70 (624)
T PF03169_consen 1 QLTFRAVLLGILLGILGAAINQYFGLKTGWISIASIFAAILSFPIGRLLAR----------IGWRFSLNPGPFTIKENNL 70 (624)
T ss_pred CeeHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHh----------hccccccCCCCCCHHHHHH
Confidence 689999999999999999999999999999999999999999999999998 1245779999999999999
Q ss_pred eeehhccCCcchhHHHHHHH--HHHHhcccchHHHHHHHHHHHhhhhhhHhhhcccceecCCCccCCchhHHHHHHHHhh
Q 014451 151 ITIFANSGAGSVYAIHIVTV--VKVFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRALH 228 (424)
Q Consensus 151 itIma~~~~~~aya~~ii~~--q~lfy~~~~~~~~~ill~lStQliGyGlAGllRrfLVyPa~miWP~~L~~vaL~~aLh 228 (424)
+++||+++.+.+++.+++.+ |..||++++++++++++++++|++|+|+||++||++|+|++|+||+.+++++++++||
T Consensus 71 vq~~asa~~~~~~a~~~i~~ipa~~~~~~~~~~~~~~l~~~~~~~lG~~~a~~lR~~lV~~~~l~fP~~~a~a~~i~alh 150 (624)
T PF03169_consen 71 VQTMASAAGGMAYAAGFIAAIPALLFLGQPFSFGYLILWTLSTQLLGYGFAGPLRRFLVYPEKLPFPSGLATAELINALH 150 (624)
T ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhhheeccccEEecccccCcchhHHHHHHHHhc
Confidence 99999999999999999999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCcccchhhhHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCccccccccchhhhhhhcC
Q 014451 229 EREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYLG 308 (424)
Q Consensus 229 ~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GLGl~p~tfDWn~I~~~~~ 308 (424)
+++.. +..++|+|+|+++|+++|+|+|+|+|+||+|+.++|+||++|+|+++++++|+.. ++||||.+. .+
T Consensus 151 ~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~w~~~~~~~~~~~~~~~~------~~~dws~~~--~g 221 (624)
T PF03169_consen 151 SGGGW-REAKSRAKFFGIAFLGSFIYYWLPQYIFPALSSFSWPCWIAPNNPWLNNLFGGWS------FSFDWSPIL--IG 221 (624)
T ss_pred cCccc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHhhhcccccceeeccccchHhhhcccce------eeEeecHHh--cC
Confidence 98821 1236899999999999999999999999999999999999999999999998766 999999986 68
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhhhhhhc-cccCCccccCcchhccccCCceeecceeeCCCCccCHHHHHHhCCCcc
Q 014451 309 SPLASPWFATANVAAGFVLVMYVLTPLCYWL-NIYNAKTFPIFSDQLFTTTGREYNITAIIDSNFHIDIAAYQREGPLYL 387 (424)
Q Consensus 309 sPL~~P~~a~~N~~~G~~i~~~ii~p~lYy~-N~w~s~ylPi~S~~lfd~~G~~Ynvs~Il~~~~~ld~~aY~~ysppyl 387 (424)
+|+.+|+++++|.++|.+++.|++.|++||+ |.|+++++|++|+++||++|+ +|+++|+++|++||++++
T Consensus 222 ~g~i~p~~~~ls~~~G~v~~w~ii~P~l~~~~~~~~~~~~p~~s~~~~~~~~~---------~~~~~~~~~~~~~g~~~~ 292 (624)
T PF03169_consen 222 SGLIVPLWAQLSMFLGAVLAWGIIIPILYYSGNAWGGAYLPFNSNSLFDNNGS---------SDGTLNWTKYIGYGPMYG 292 (624)
T ss_pred CCeeccHHHHHHHHHHHHHHHHhcCCeeeeeccccCCccccccchhhhhhcCc---------cccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999 889999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHhhh
Q 014451 388 SIFFATTYGLGFAALTATIVHVALFHGRYAFLHFV 422 (424)
Q Consensus 388 s~~~~~~y~~~fa~~ta~i~h~~L~~~~~i~~~~~ 422 (424)
++.++++|+..|+.++++++|.+++|+|++++++|
T Consensus 293 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 327 (624)
T PF03169_consen 293 SGLFALSYGWSFAALTASIVHAILWHWKAIWQAFK 327 (624)
T ss_pred hHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999997664
No 5
>TIGR00733 putative oligopeptide transporter, OPT family. This protein represents a small family of integral membrane proteins from Gram-negative bacteria, a Gram-positive bacteria, and an archaeal species. Members of this family contain 15 to 18 GES predicted transmembrane regions, and this family has extensive homology to a family of yeast tetrapeptide transporters, including isp4 (Schizosaccharomyces pombe) and Opt1 (Candida albicans). EspB, an apparent equivalog from Myxococcus xanthus, shares an operon with a two component system regulatory protein, and is required for the normal timing of sporulation after the aggregation of cells. This is consistent with a role in transporting oligopeptides as signals across the membrane.
Probab=98.40 E-value=4.5e-06 Score=90.90 Aligned_cols=221 Identities=14% Similarity=0.166 Sum_probs=160.0
Q ss_pred cchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCCceeecCCCceeeecCCCCCcccceee
Q 014451 72 LTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKEHVLI 151 (424)
Q Consensus 72 ~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~~~~~~~~~~~f~LNPGPFniKEH~li 151 (424)
.|+|+.++|++++++.++.|....+|.=-..=.++..-++++-+=|++. ++|++|+.++
T Consensus 2 lT~Ravi~G~~lg~l~~asn~YlgLk~G~t~~~sI~aAil~~~ilr~~~---------------------~~t~~Enniv 60 (591)
T TIGR00733 2 YTVRGFILGALITIIFTAANVYLGLYVGMTFAASIPAAVISMAVLMAFR---------------------DRSILENNMV 60 (591)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHhc---------------------cCChhHHHHH
Confidence 6999999999999999999999999976666666777777776666431 2699999999
Q ss_pred eehhccCCcchhHHHHHHHHH-HHh-c--ccchHHHHHHHHHHHhhhhhhHhhhcccceecCCCccCCchhHHHHHHHHh
Q 014451 152 TIFANSGAGSVYAIHIVTVVK-VFY-K--QHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFRAL 227 (424)
Q Consensus 152 tIma~~~~~~aya~~ii~~q~-lfy-~--~~~~~~~~ill~lStQliGyGlAGllRrfLVyPa~miWP~~L~~vaL~~aL 227 (424)
.-+|+++.+-+ . ++.+.. ++. + ++++++.-++.++.--++|--++=.+||.+|...+.-||+--.+.-++++-
T Consensus 61 QT~asA~~~~a--g-~~~~lPAl~~lg~~~~~~~~~~~~~~~~gg~lGvlf~iPLRr~~I~~~~L~fP~G~A~Ae~l~~g 137 (591)
T TIGR00733 61 QTAASAAGTLS--S-VIFVLPALLMLGYWTEFPYWITTVICALGGSLGVLFTIPLRRAFVVESKLPYPEGVACAEVLKAG 137 (591)
T ss_pred HHHHHHHHHHH--H-HHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHcc
Confidence 88887765433 2 333333 332 2 357788888888899999999999999999999999999999998888864
Q ss_pred hhcccCCCCCcccchhhhHHHHHHHHHHhhhhHHHHhhhhhhhhhhhcCCCceEEEecccccCccccccccchhhhhhhc
Q 014451 228 HEREKRASGGVTRTQFFMMGFVCSFAYYVFPGYLLEMLTSLSWICWIFPKSVVAQQVGSGLYGLGVAAVGIDWSTISSYL 307 (424)
Q Consensus 228 h~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~yifp~Ls~fs~~cwi~P~n~~v~~lfGg~~GLGl~p~tfDWn~I~~~~ 307 (424)
.+. + +.++.|.-+..+..+++|.++++ +.... +..-.|.. .|.+..-+++||+- +++
T Consensus 138 ~~g--~---~~~~~~~l~~g~~~s~~~~~~~~--~~~~~-~~~~~~~~-------------~g~~~~~~~~~~Sp--alv 194 (591)
T TIGR00733 138 DKA--R---NGTGAKPIAYGGILASIYAFLGS--LRVWS-GTLSAAKL-------------VGRRALYFGSDLSL--ALI 194 (591)
T ss_pred ccc--c---chhhHHHHHHHHHHHHHHHHHHH--hccCC-chHHHHHh-------------cCCcceEEEecccH--HHH
Confidence 221 1 12456777778889999998843 22221 11112221 11122224678885 367
Q ss_pred CCCccccHHHHHHHHHHHHHHHHHHhhhhhhc
Q 014451 308 GSPLASPWFATANVAAGFVLVMYVLTPLCYWL 339 (424)
Q Consensus 308 ~sPL~~P~~a~~N~~~G~~i~~~ii~p~lYy~ 339 (424)
+.-..++.-..+..++|.++...++.|.+...
T Consensus 195 G~G~ivG~~v~~s~~~G~vlaWgvl~P~l~~~ 226 (591)
T TIGR00733 195 GVGYLVGLNIGFAMFLGGAIAWGVAIPIYTAK 226 (591)
T ss_pred cCceeeChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999999999999777888877643
No 6
>COG1297 Predicted membrane protein [Function unknown]
Probab=88.44 E-value=1.9 Score=47.52 Aligned_cols=167 Identities=20% Similarity=0.300 Sum_probs=110.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHhhhhcccccCcccccHHHHHHHHHhhhhhhhhhcCCceeecCCCceeeecCCCCCccc
Q 014451 68 CLPVLTFRMWVLGTLSCVLLSFLNQFFWYRTEPLSITAISAQIAVVPLGQLMAAKLTDRVFFKSTPLEFTLNPGPFNVKE 147 (424)
Q Consensus 68 ~~P~~TfR~~~lG~~~~~~ga~inq~F~~R~p~i~is~~v~qll~yp~G~~~a~~lP~~~~~~~~~~~f~LNPGPFniKE 147 (424)
++|-.|+|..++|+..+++...-|..+.+|.---..+++-+-+++ |+- ++- | .+.|+-|
T Consensus 11 ~l~elTlr~vIlGilitvi~~aaN~yLGL~vGlT~a~SIPAAVIS------mav-------lk~----~----~~~silE 69 (624)
T COG1297 11 FLPELTLRGVILGILITVIFLAANVYLGLKVGLTFASSIPAAVIS------MAV-------LKA----F----KGSSILE 69 (624)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhheecceehhhhHHHHHH------HHH-------HHH----h----Cccchhh
Confidence 689999999999999999999999999999777777777777776 221 010 1 2789999
Q ss_pred ceeeeehhccCCcchh-HHHHHHHHH-HHhcccchHHHHHHHHHHHhhhhhhHhhhcccceecCCCccCCchhHHHHHHH
Q 014451 148 HVLITIFANSGAGSVY-AIHIVTVVK-VFYKQHFTFFVSLLVVFTTQVLGFGWAGIFRRYLVEPAAMWWPANLVQVSLFR 225 (424)
Q Consensus 148 H~litIma~~~~~~ay-a~~ii~~q~-lfy~~~~~~~~~ill~lStQliGyGlAGllRrfLVyPa~miWP~~L~~vaL~~ 225 (424)
+-++.-||+++.+.+- .+.++-... +=|-+++++.--......--++|-=+.==+||-+|-+++.=||.--...-+++
T Consensus 70 NNmVQT~ASAagtlsa~vIFviPgl~m~g~w~~fpf~~t~~i~~lggiLGvlftiPLRra~Iv~skLPyPeGvAaAEvL~ 149 (624)
T COG1297 70 NNMVQTQASAAGTLSAGVIFVLPGLLMLGYWSGFPFWQTAIICALGGILGVLFTIPLRRAMIVESKLPYPEGVAAAEVLK 149 (624)
T ss_pred hHHHHHHHhhhccccccEEEechhHHhhccccCCcHHHHHHHHHHHhhcceEEEEEeeeeeeccCCCCCCCchhHHHHHH
Confidence 9999999988754443 334443332 33445555443322222222333333333599999999999999999999999
Q ss_pred HhhhcccCCCCCcccchhhhHHHHHHHHHHhhhh
Q 014451 226 ALHEREKRASGGVTRTQFFMMGFVCSFAYYVFPG 259 (424)
Q Consensus 226 aLh~~~~~~~~~isR~rfF~~~f~~~Fvy~~~P~ 259 (424)
+...+|... |-.|-=.+......+|-++-+
T Consensus 150 ~g~~~~gd~----~g~~~i~~g~~~~~~~~~l~~ 179 (624)
T COG1297 150 AGNQREGDA----SGIKLIALGGALAALYSLLAS 179 (624)
T ss_pred hcCCCCCCc----ccchhhhhhhHHHHHHHHHhc
Confidence 987433221 233444445555566655554
No 7
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=42.17 E-value=28 Score=23.98 Aligned_cols=18 Identities=39% Similarity=0.789 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014451 76 MWVLGTLSCVLLSFLNQF 93 (424)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (424)
+|+||+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~v~~a~ 22 (30)
T TIGR02106 5 AWILGTLLACAFGVLNAM 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999998865
No 8
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=40.58 E-value=58 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=22.9
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHccHHHH
Q 014451 390 FFAT-TYGLGFAALTATIVHVALFHGRYAF 418 (424)
Q Consensus 390 ~~~~-~y~~~fa~~ta~i~h~~L~~~~~i~ 418 (424)
.|++ +||+++.++...+.+...-+++-..
T Consensus 6 ~yVW~sYg~t~l~l~~li~~~~~~~r~~~~ 35 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLILWSLLDRRRLLR 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4665 8999999999999888877765443
No 9
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=39.83 E-value=33 Score=23.30 Aligned_cols=18 Identities=33% Similarity=0.759 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014451 76 MWVLGTLSCVLLSFLNQF 93 (424)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (424)
+|++|+.+++..+.+|..
T Consensus 5 aWilG~~lA~~~~i~~a~ 22 (28)
T PF08173_consen 5 AWILGVLLACAFGILNAM 22 (28)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 699999999999998864
No 10
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=37.41 E-value=75 Score=23.32 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHccHHHH
Q 014451 390 FFAT-TYGLGFAALTATIVHVALFHGRYAF 418 (424)
Q Consensus 390 ~~~~-~y~~~fa~~ta~i~h~~L~~~~~i~ 418 (424)
.|++ +|++++.++...+++...-+++-..
T Consensus 5 ~yVW~sYg~t~~~l~~l~~~~~~~~r~~~~ 34 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLIVWSLRRRRRLRK 34 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666 8999999999999998877665443
No 11
>PRK14749 hypothetical protein; Provisional
Probab=37.27 E-value=38 Score=23.33 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 014451 76 MWVLGTLSCVLLSFLNQF 93 (424)
Q Consensus 76 ~~~lG~~~~~~ga~inq~ 93 (424)
+|+||+.+++..+.+|-+
T Consensus 5 aWiLG~~lAc~f~ilna~ 22 (30)
T PRK14749 5 LWFVGILLMCSLSTLVLV 22 (30)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 799999999999999864
No 12
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=30.07 E-value=45 Score=28.80 Aligned_cols=17 Identities=29% Similarity=0.862 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHh
Q 014451 74 FRMWVLGTLSCVLLSFL 90 (424)
Q Consensus 74 fR~~~lG~~~~~~ga~i 90 (424)
+|+|++|++-+++|+.+
T Consensus 72 ~KmwilGlvgTi~gsli 88 (98)
T PF11166_consen 72 IKMWILGLVGTIFGSLI 88 (98)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 89999999999988655
No 13
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=21.56 E-value=99 Score=22.07 Aligned_cols=19 Identities=26% Similarity=0.746 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhc
Q 014451 76 MWVLGTLSCVLLSFLNQFF 94 (424)
Q Consensus 76 ~~~lG~~~~~~ga~inq~F 94 (424)
+|+||+.+++--+.+|.+-
T Consensus 5 aWiLG~lLAcAFgiinAlw 23 (37)
T COG4890 5 AWILGLLLACAFGIINALW 23 (37)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999888888653
Done!