Query 014451
Match_columns 424
No_of_seqs 133 out of 688
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:48:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 18.7 1.8E+02 0.0061 21.6 4.7 42 308-350 2-44 (54)
2 2knc_A Integrin alpha-IIB; tra 10.9 3.3E+02 0.011 20.1 4.3 41 310-351 7-48 (54)
3 2v2f_A Penicillin binding prot 9.4 98 0.0034 18.8 0.8 12 350-361 5-16 (26)
4 2fnf_X Putative RAS effector N 6.8 1.4E+02 0.0046 22.8 0.7 18 55-72 2-19 (72)
5 2jsh_A Appetite-regulating hor 5.9 88 0.003 20.0 -0.7 13 373-385 10-22 (26)
6 2f3i_A DNA-directed RNA polyme 5.5 1.7E+02 0.0057 26.0 0.6 14 356-369 16-30 (150)
7 3pm2_A Odorant binding protein 5.2 1.5E+02 0.0051 26.0 0.2 23 361-384 60-82 (173)
8 1wrg_A LH-1, light-harvesting 4.9 5E+02 0.017 19.2 2.8 14 403-416 33-46 (55)
9 2k1a_A Integrin alpha-IIB; sin 4.9 8.8E+02 0.03 16.8 4.5 33 312-345 7-40 (42)
10 1lgh_A LH II, B800/850, light 4.4 9.1E+02 0.031 17.9 3.9 26 389-414 15-40 (56)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=18.75 E-value=1.8e+02 Score=21.60 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=26.7
Q ss_pred CCCccccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCccccCc
Q 014451 308 GSPLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPIF 350 (424)
Q Consensus 308 ~sPL~~P~~a~~N~-~~G~~i~~~ii~p~lYy~N~w~s~ylPi~ 350 (424)
|.|-.+|+|.++-. .+|.++ .-+++-++|--+.+.-++-|.+
T Consensus 2 ~~~~~vp~WiIi~svl~GLLL-L~Lii~~LwK~GFFKR~~~~~~ 44 (54)
T 2l8s_A 2 GLPGRVPLWVILLSAFAGLLL-LMLLILALWKIGFFKRPLKKKM 44 (54)
T ss_dssp CCCCCCCTHHHHHHHHHHHHH-HHHHHHHHHHHHHTTSCCSCCC
T ss_pred CCCccCchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCcchh
Confidence 35667898876544 555555 4445558887787776665443
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.88 E-value=3.3e+02 Score=20.08 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=26.8
Q ss_pred CccccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCccccCcc
Q 014451 310 PLASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAKTFPIFS 351 (424)
Q Consensus 310 PL~~P~~a~~N~-~~G~~i~~~ii~p~lYy~N~w~s~ylPi~S 351 (424)
+-.+|+|-++-. .+|.++ .-+++-++|--+.+.-++-|...
T Consensus 7 ~~~vp~wiIi~svl~GLll-L~li~~~LwK~GFFkR~~~~~~e 48 (54)
T 2knc_A 7 ERAIPIWWVLVGVLGGLLL-LTILVLAMWKVGFFKRNRPPLEE 48 (54)
T ss_dssp TTTCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTTTCCSCCC
T ss_pred CCCcchHHHHHHHHHHHHH-HHHHHHHHHHcCcccCCCCCcch
Confidence 335799876544 555555 44455588888888877766543
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=9.42 E-value=98 Score=18.78 Aligned_cols=12 Identities=8% Similarity=0.268 Sum_probs=9.3
Q ss_pred cchhccccCCce
Q 014451 350 FSDQLFTTTGRE 361 (424)
Q Consensus 350 ~S~~lfd~~G~~ 361 (424)
.++.+||++|+.
T Consensus 5 ~ss~IYD~~g~~ 16 (26)
T 2v2f_A 5 TSSKIYDNKNQL 16 (26)
T ss_pred CCCEEEeCCCCE
Confidence 467888888875
No 4
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=6.77 E-value=1.4e+02 Score=22.83 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=4.2
Q ss_pred HhHhhccCCCCCCCCCcc
Q 014451 55 KQVALTVSTEDDTCLPVL 72 (424)
Q Consensus 55 ~eVra~v~~~DDp~~P~~ 72 (424)
+|||.+....+||+++..
T Consensus 2 ~~~~~~~~~~~dp~~~~~ 19 (72)
T 2fnf_X 2 RDVRSIFEQPQDPRVLAE 19 (72)
T ss_dssp ------------CCCCGG
T ss_pred cchhhhccCCCCcccccc
Confidence 579999999999988654
No 5
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=5.88 E-value=88 Score=20.03 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=10.8
Q ss_pred ccCHHHHHHhCCC
Q 014451 373 HIDIAAYQREGPL 385 (424)
Q Consensus 373 ~ld~~aY~~yspp 385 (424)
++-++-|++||+.
T Consensus 10 ~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 10 KLSGAQYQQHGRA 22 (26)
T ss_dssp GGHHHHCSCSSSC
T ss_pred EecHHHHHHHhHH
Confidence 5778899999985
No 6
>2f3i_A DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide; RNA polymerase II, transferase; NMR {Homo sapiens}
Probab=5.45 E-value=1.7e+02 Score=25.99 Aligned_cols=14 Identities=7% Similarity=0.458 Sum_probs=11.8
Q ss_pred ccCCceee-cceeeC
Q 014451 356 TTTGREYN-ITAIID 369 (424)
Q Consensus 356 d~~G~~Yn-vs~Il~ 369 (424)
|..||+|+ ||||.-
T Consensus 16 Dp~GKkfdrVSRi~~ 30 (150)
T 2f3i_A 16 DPEGKKFDRVSRLHC 30 (150)
T ss_dssp ECCCCSSTTEEEEEE
T ss_pred CCCCCeeeeEEEEEE
Confidence 78899998 899873
No 7
>3pm2_A Odorant binding protein (AGAP007287-PA); alpha helical protein, odorant MOLE antennae, transport protein; 1.80A {Anopheles gambiae}
Probab=5.21 E-value=1.5e+02 Score=25.99 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=18.8
Q ss_pred eeecceeeCCCCccCHHHHHHhCC
Q 014451 361 EYNITAIIDSNFHIDIAAYQREGP 384 (424)
Q Consensus 361 ~Ynvs~Il~~~~~ld~~aY~~ysp 384 (424)
.||-+.+++ ||+||.++.+++-.
T Consensus 60 i~~~~g~l~-~g~ld~~~~~~~l~ 82 (173)
T 3pm2_A 60 VMNSTSLYS-NGKIDREALTKLYL 82 (173)
T ss_dssp HHHHTTCEE-TTEECHHHHHHHHH
T ss_pred hHHHhCCcc-CCcccHHHHHHHHH
Confidence 688888998 78999999888643
No 8
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=4.93 E-value=5e+02 Score=19.20 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=12.1
Q ss_pred HHHHHHHHHHccHH
Q 014451 403 TATIVHVALFHGRY 416 (424)
Q Consensus 403 ta~i~h~~L~~~~~ 416 (424)
-|++.|++.|.|+.
T Consensus 33 iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 33 VAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHhcc
Confidence 68999999998875
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.92 E-value=8.8e+02 Score=16.80 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=19.4
Q ss_pred cccHHHHHHH-HHHHHHHHHHHhhhhhhccccCCc
Q 014451 312 ASPWFATANV-AAGFVLVMYVLTPLCYWLNIYNAK 345 (424)
Q Consensus 312 ~~P~~a~~N~-~~G~~i~~~ii~p~lYy~N~w~s~ 345 (424)
-+|+|-++-. .+|.++.. +++-++|--+.+.-+
T Consensus 7 ~vp~wiIi~s~l~GLllL~-li~~~LwK~GFFkR~ 40 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLT-ILVLAMWKVGFFKRN 40 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HHHHHHHHTTTTCCC
T ss_pred CcchHHHHHHHHHHHHHHH-HHHHHHHHcCcccCC
Confidence 4788876544 55655544 445577766665433
No 10
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=4.39 E-value=9.1e+02 Score=17.87 Aligned_cols=26 Identities=19% Similarity=-0.022 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcc
Q 014451 389 IFFATTYGLGFAALTATIVHVALFHG 414 (424)
Q Consensus 389 ~~~~~~y~~~fa~~ta~i~h~~L~~~ 414 (424)
+.-.+--.++|.++.|.++|.+|--.
T Consensus 15 P~~~L~~l~~~v~vlAllIH~~lLs~ 40 (56)
T 1lgh_A 15 PSTWLPVIWIVATVVAIAVHAAVLAA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445566788889999999987543
Done!