Your job contains 1 sequence.
>014452
MVVQGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDK
VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVH
SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS
PHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRH
NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGH
GPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQL
YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC
GVTS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 014452
(424 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 664 4.5e-107 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 295 2.1e-36 2
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 278 9.2e-34 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 320 8.1e-33 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 274 1.0e-30 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 263 2.3e-29 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 293 9.6e-25 1
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 206 1.3e-20 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 245 4.7e-18 1
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 153 7.4e-16 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 153 7.4e-16 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 153 7.4e-16 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 153 7.4e-16 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 153 7.4e-16 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 153 7.4e-16 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 149 3.5e-15 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 149 5.6e-15 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 153 1.2e-14 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 147 1.4e-14 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 145 1.5e-14 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 145 1.5e-14 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 149 1.6e-14 3
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 149 1.6e-14 3
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 149 1.9e-14 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 145 2.3e-14 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 149 2.9e-14 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 149 3.0e-14 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 145 5.2e-14 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 149 5.3e-14 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 149 5.3e-14 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 149 5.9e-14 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 149 6.0e-14 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 149 6.0e-14 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 149 6.0e-14 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 149 6.0e-14 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 204 1.0e-13 1
UNIPROTKB|Q9Y6M1 - symbol:IGF2BP2 "Insulin-like growth fa... 204 2.2e-13 1
UNIPROTKB|F8W930 - symbol:IGF2BP2 "Insulin-like growth fa... 204 2.2e-13 1
UNIPROTKB|K7GQ87 - symbol:RFC4 "Uncharacterized protein" ... 202 2.5e-13 1
UNIPROTKB|K7GKD3 - symbol:RFC4 "Uncharacterized protein" ... 202 2.8e-13 1
UNIPROTKB|F1SFK0 - symbol:RFC4 "Uncharacterized protein" ... 202 2.8e-13 1
UNIPROTKB|F1PDI8 - symbol:IGF2BP2 "Uncharacterized protei... 202 2.9e-13 1
UNIPROTKB|E1BFI4 - symbol:IGF2BP2 "Uncharacterized protei... 202 3.7e-13 1
UNIPROTKB|K7GM69 - symbol:RFC4 "Uncharacterized protein" ... 179 3.8e-13 1
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 139 4.2e-13 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 142 6.4e-13 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 142 6.6e-13 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 142 7.1e-13 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 194 1.4e-12 1
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 143 1.6e-12 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 143 1.6e-12 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 137 2.5e-12 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 140 2.5e-12 2
MGI|MGI:1890358 - symbol:Igf2bp2 "insulin-like growth fac... 194 2.8e-12 1
RGD|1305614 - symbol:Igf2bp2 "insulin-like growth factor ... 194 2.8e-12 1
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 160 3.5e-12 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 138 4.6e-12 2
UNIPROTKB|K7GQW0 - symbol:RFC4 "Uncharacterized protein" ... 190 5.2e-12 1
UNIPROTKB|Q5RB68 - symbol:IGF2BP2 "Insulin-like growth fa... 190 7.1e-12 1
UNIPROTKB|F1NVW3 - symbol:IGF2BP2 "Uncharacterized protei... 190 7.5e-12 1
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 167 7.9e-12 1
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 167 7.9e-12 1
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 160 1.8e-11 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 126 1.9e-11 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 148 2.3e-11 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 122 4.5e-11 2
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 140 6.2e-11 2
ZFIN|ZDB-GENE-060503-536 - symbol:igf2bp2b "insulin-like ... 179 7.8e-11 1
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 108 9.1e-11 3
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 108 9.1e-11 3
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 108 9.1e-11 3
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 108 9.2e-11 3
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 116 1.1e-10 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 154 1.1e-10 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 114 1.8e-10 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 114 1.8e-10 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 113 2.3e-10 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 109 2.8e-10 2
UNIPROTKB|F1NWN2 - symbol:IGF2BP2 "Uncharacterized protei... 175 3.3e-10 1
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 147 3.6e-10 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 146 3.9e-10 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 122 4.1e-10 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 122 4.2e-10 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 146 5.1e-10 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 122 5.3e-10 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 109 5.4e-10 2
ZFIN|ZDB-GENE-070912-44 - symbol:igf2bp2a "insulin-like g... 173 6.5e-10 1
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 122 6.7e-10 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 122 6.7e-10 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 122 6.7e-10 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 133 1.7e-09 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 119 1.9e-09 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 145 2.0e-09 1
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 145 2.0e-09 1
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 124 2.4e-09 2
ZFIN|ZDB-GENE-060929-1258 - symbol:igf2bp1 "insulin-like ... 167 2.9e-09 1
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 164 6.1e-09 1
FB|FBgn0261552 - symbol:ps "pasilla" species:7227 "Drosop... 131 9.7e-09 3
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 108 9.8e-09 2
UNIPROTKB|E1BKJ7 - symbol:IGF2BP1 "Uncharacterized protei... 162 9.9e-09 1
WARNING: Descriptions of 89 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 664 (238.8 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
Identities = 143/223 (64%), Positives = 161/223 (72%)
Query: 3 VQGNPYPPAAE--PFHQRGYAPGYHSRGYSS-------GPGHETVGGRNRMFYEEEVVFK 53
+Q + PP + PF Q GY P YHS Y P E VG NR EEEV F+
Sbjct: 220 LQESGAPPTWDECPFPQPGYPPEYHSMEYHPQWDHPPPNPMPEDVGPFNRPVVEEEVAFR 279
Query: 54 LLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQ 113
LLC DKVGSLIGKGG++VR QNE+GASIK++D DSEERI+VISAREN E RHS AQ
Sbjct: 280 LLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQ 339
Query: 114 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
D VMRVH+RI EIGFEP AVVARLLVHS IG LLG+GGH++SEMRRATGASIRVF KD
Sbjct: 340 DGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVFAKD 399
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 216
QA + S HDEIVQVIGN +VQDALF I RLRE +FP + P
Sbjct: 400 QATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLP 442
Score = 415 (151.1 bits), Expect = 4.5e-107, Sum P(2) = 4.5e-107
Identities = 92/180 (51%), Positives = 114/180 (63%)
Query: 246 GSYPSP-VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTF 304
G P P +GP+ GP Q + A+ P+ P + P G +RP GP F
Sbjct: 447 GGPPPPFMGPYPEPPPPFGPRQ---YPASPDRYHSPVGPFHERHCHGP-GFDRPP-GPGF 501
Query: 305 DRPPSPRSWTPQGVGGGDPRGF---DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLY 361
DRPPSP SWTPQ G P G D + GF RN P+ S N ++TS +E+VIPQ Y
Sbjct: 502 DRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSEN--PVMTSANVEIVIPQAY 559
Query: 362 MAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 421
+ HVYGEN SNL++I+Q+SGANVVV+DPK G TEG+V+VSGTSDQ AQSL+HAFILCG
Sbjct: 560 LGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFILCG 619
Score = 148 (57.2 bits), Expect = 2.6e-65, Sum P(3) = 2.6e-65
Identities = 37/119 (31%), Positives = 66/119 (55%)
Query: 104 NSEMRHSPAQDAVMRVHSRI------AEIG---FEPGQAV-VARLLVHSQQIGCLLGRGG 153
+ E S AQ A++RV RI A + + G++ + R++V Q+ L+ +GG
Sbjct: 108 DDEEAPSSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGG 167
Query: 154 HIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 212
++ ++R +GA +R+ DQ P C P D ++Q+ G + SV+ AL +T+ L+E+ P
Sbjct: 168 KMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAP 226
Score = 139 (54.0 bits), Expect = 2.6e-65, Sum P(3) = 2.6e-65
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILP-DSEERIVVISARENSE 106
E V F+LLC + G++IGKGGS++R Q+ TG+ I++ D +P SEER+V+I A +
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKK 76
Query: 107 MRHSPAQDA 115
S D+
Sbjct: 77 KDESNVCDS 85
Score = 76 (31.8 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 189
++V RLL + + G ++G+GG ++ ++ TG+ IRV D P P +E V +I
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVI--DDIP---VPSEERVVLI 69
Score = 66 (28.3 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 23/116 (19%), Positives = 48/116 (41%)
Query: 296 ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN-RPVESG--NHAAILTSTT 352
+ G PT+D P P+ P + + P N P + G N +
Sbjct: 221 QESGAPPTWDECPFPQPGYPPEYHSME---YHPQWDHPPPNPMPEDVGPFNRPVVEEEVA 277
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 408
++ P + + G+ + + ++ SGA++ V+DP + E ++++S + R
Sbjct: 278 FRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Score = 62 (26.9 bits), Expect = 3.7e-43, Sum P(2) = 3.7e-43
Identities = 26/102 (25%), Positives = 49/102 (48%)
Query: 32 GPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIAD---I 88
G TV G E E + +++ ++V L+ KGG +++ + ++GA ++I+ I
Sbjct: 130 GDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQI 189
Query: 89 LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEP 130
P + VVI N + S + A++ V + + E G P
Sbjct: 190 PPCAFPGDVVIQM--NGKF--SSVKKALLLVTNCLQESGAPP 227
Score = 50 (22.7 bits), Expect = 5.3e-19, Sum P(4) = 5.3e-19
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 283 PPNSDRIPFPYGSERPG-HG----PTFDRPPSPRSWTPQGVG 319
PP D PFP P H P +D PP P P+ VG
Sbjct: 226 PPTWDECPFPQPGYPPEYHSMEYHPQWDHPP-PNPM-PEDVG 265
Score = 46 (21.3 bits), Expect = 5.3e-19, Sum P(4) = 5.3e-19
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 336 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 386
NR VE G + + V P Y+ + G+ +S +R+ +GA++ V
Sbjct: 347 NRIVEIGFEPSAAVVARLLVHSP--YIGRLLGKGGHLISEMRRATGASIRV 395
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 295 (108.9 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 56/166 (33%), Positives = 102/166 (61%)
Query: 46 YEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENS 105
Y EE+VF++LC DK+ ++G+ I+ QNE G ++++D + S+E+I+ IS+ E
Sbjct: 321 YSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAP 380
Query: 106 EMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ PAQ+A++ + ++I ++ + + RLLV S+ CL G+ G VSE+ R TG
Sbjct: 381 DDPFFPAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGS-VSEISRLTGT 439
Query: 166 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 211
S+++ +++ PRC S +D ++Q+ G + ++AL +T LR +F
Sbjct: 440 SVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
Score = 190 (71.9 bits), Expect = 9.4e-35, Sum P(3) = 9.4e-35
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 127 GFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDE 184
G PG VV RL+V +GCLLG+GG I+ +MR T IR+ P++ PRC S +E
Sbjct: 168 GVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEE 227
Query: 185 IVQVIGNYHSVQDALFHITSRLRET 209
IVQ++G ++V++AL ++SRLRE+
Sbjct: 228 IVQIVGELNAVKNALAIVSSRLRES 252
Score = 163 (62.4 bits), Expect = 9.4e-35, Sum P(3) = 9.4e-35
Identities = 43/127 (33%), Positives = 66/127 (51%)
Query: 10 PAAEPFHQRGYAPGYHSRG---YSSGPGHETVGGRNRMFYEEEVV---FKLLCHLDKVGS 63
P ++P + Y G G Y G G GR + E + +++LCH K G
Sbjct: 22 PRSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSKSHPETMATTTYRILCHDAKAGG 81
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDSEERIVVIS--ARENSEMR---HSPAQDAVMR 118
+IGK G+I+++ + TGA I + +++P ERI+ IS R + + R SPAQ+A+
Sbjct: 82 VIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRMPSFSPAQEALFS 141
Query: 119 VHSRIAE 125
VH RI E
Sbjct: 142 VHDRILE 148
Score = 141 (54.7 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 338 PVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 396
PV + A ++T +T+EVV+P+ + + ++ + L+ I + SGA+V + + +P T+
Sbjct: 563 PVTTSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQN 622
Query: 397 VVMVSGTSDQMRAAQSLIHAFIL 419
++ +SGT +Q AQSL+ FIL
Sbjct: 623 IIRISGTPEQAERAQSLLQGFIL 645
Score = 72 (30.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 28/97 (28%), Positives = 44/97 (45%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF---PKDQAPRCGSPHDEIVQV----I 189
R+L H + G ++G+ G I+ +R+ TGA I V P D A R D + +
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGD-AERIIEISDNRRRDPDGRM 129
Query: 190 GNYHSVQDALFHITSRLRETI--FPMKRPGPNNGHSY 224
++ Q+ALF + R+ E+ F P P Y
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDY 166
Score = 64 (27.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI 85
VV +L+ VG L+GKGG I+ + ET I+I
Sbjct: 176 VVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRI 211
Score = 61 (26.5 bits), Expect = 1.8e-26, Sum P(3) = 1.8e-26
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS---DQMRAA 410
+++ P + V GE+ + ++ G +V V+DP G+ E ++ +S D A
Sbjct: 328 QILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPA 387
Query: 411 Q-SLIH 415
Q +L+H
Sbjct: 388 QEALLH 393
Score = 42 (19.8 bits), Expect = 4.6e-19, Sum P(3) = 4.6e-19
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 269 DHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR 306
+ +A F +G P PP + YG RPG G R
Sbjct: 148 ESEAQFGYG-GP--PPEEEE---DYGGVRPGGGRVVTR 179
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 278 (102.9 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 59/183 (32%), Positives = 106/183 (57%)
Query: 39 GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVV 98
GG +R E++ K++C K+G +IGKGG ++ + +G+ I++ D + ++ V+
Sbjct: 309 GGSSR---SEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVI 365
Query: 99 -ISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVS 157
++A E+ + S A +AV+ + +I + E V +LLV S+ IGC++G+ G I+S
Sbjct: 366 TVTATESPDDLKSMAVEAVLLLQEKIND---EDEDKVKMQLLVSSKVIGCIIGKSGSIIS 422
Query: 158 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG 217
E+R+ T A I + + P+C P+DE+V++ G +V+DAL I RLR+ + + G
Sbjct: 423 EIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETG 482
Query: 218 PNN 220
N
Sbjct: 483 SRN 485
Score = 149 (57.5 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 304 FDRPP---SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQL 360
F+R P S S P G F + N S + + STT+EV IP
Sbjct: 524 FNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPAN 583
Query: 361 YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 419
+ V G NL +IR+ISGA + ++D K V ++SGTS+Q R A++L AFI+
Sbjct: 584 AVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIM 642
Score = 120 (47.3 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
Identities = 42/140 (30%), Positives = 68/140 (48%)
Query: 80 GASIKIADILPDSEERIVVISARENSEMRHS-P---AQDAVMRVHSRI-AEIGFEPGQAV 134
G S ++ I E+ ++ E SE+ +S P AQ A+++VH I A +
Sbjct: 85 GCSERVITIFCSVSEKKDIVDI-EYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTK 143
Query: 135 V-------ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA-PR--CGSPHDE 184
+ RLLV S Q ++G+ G I+ +R T A+++V KD + P C D
Sbjct: 144 IDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDN 203
Query: 185 IVQVIGNYHSVQDALFHITS 204
IV + G SV+ ALF +++
Sbjct: 204 IVMISGETESVKKALFAVSA 223
Score = 116 (45.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVI--SAREN--- 104
VV+++LC +GS+IGK G ++ + ET A IK+ D P ER++ I S E
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 105 -----SEMRHS-P---AQDAVMRVHSRI 123
SE+ +S P AQ A+++VH I
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAI 131
Score = 67 (28.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
VV R+L S +G ++G+ G +++ +R+ T A I+V D P C
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVV--DPFPGC 86
Score = 67 (28.6 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA--DILPDSE------ERIVVISAREN 104
+LL + +IGK GSI++ + T A++K+ D+ S + IV+IS
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETE 212
Query: 105 SEMRHSPAQDAVMRVHSRIAEIGFEPG-QAVVARLLVHS 142
S + A A+M S +I + Q V A +++ S
Sbjct: 213 SVKKALFAVSAIMYKVSPREQIPLDTTVQEVPASIIIPS 251
Score = 67 (28.6 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 31/139 (22%), Positives = 51/139 (36%)
Query: 286 SDRIPFPYGSERPGHGPTFDRPPSPRSWT---PQGVGGGDPRGFDASSGFTPRNRPVESG 342
SD +P P F + S+ PQG G F+ PV G
Sbjct: 251 SDLSIYPQAGLYPSQDSIFQHGANVSSFIGTLPQGYGENAANPVPV---FSASALPVVHG 307
Query: 343 -NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG-VVMV 400
++ I+V+ + V G+ + IRQ SG+++ VND + + V+ V
Sbjct: 308 FGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITV 367
Query: 401 SGTSDQMRAAQSLIHAFIL 419
+ T + A +L
Sbjct: 368 TATESPDDLKSMAVEAVLL 386
Score = 60 (26.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
Q+ + + + +G ++GRGG + +RR +GA I +
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEI 609
Score = 57 (25.1 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-----NDPKPGAT---EGVVMVSGTSDQ 406
+++P + V G++ S + +IR + ANV V +DP + +VM+SG ++
Sbjct: 154 LLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETES 213
Query: 407 MRAAQSLIHAFI 418
++ A + A +
Sbjct: 214 VKKALFAVSAIM 225
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 320 (117.7 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 72/174 (41%), Positives = 103/174 (59%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVI---SAREN 104
++ VF+ LC + K+GS+IG+GG IV+ +N+T + I+I + +P +ER++ I S N
Sbjct: 48 DDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETN 107
Query: 105 S----EMRHSPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGH 154
+ E SPAQDA+ R+H R+ +E E + V A+LLV S QIGC+LGRGG
Sbjct: 108 AFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQ 167
Query: 155 IVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
IV +R TGA IR+ P C DE++Q+ G V+ AL I SRL E
Sbjct: 168 IVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 306 (112.8 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
Identities = 64/165 (38%), Positives = 103/165 (62%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR 108
E +L+ ++ + S+IGKGG+++ + ET A+IK+ + + ++ ISARE E
Sbjct: 283 EFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDA 342
Query: 109 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+SP +AVMR+ + ++ + + G + RLLV S +IGC+LG+GG I++EMRR T A+
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKAN 402
Query: 167 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 211
IR+ K+ P+ S DE+VQ+ G ++AL ITSRLR +F
Sbjct: 403 IRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 99 (39.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
E++V KLL D++G ++G+GG IV+ ++ETGA I+I + D + +++ E +
Sbjct: 144 EKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRI---VKDRNMPLCALNSDELIQ 200
Query: 107 MRHSP--AQDAVMRVHSRIAE 125
+ + A++++ SR+ E
Sbjct: 201 ISGEVLIVKKALLQIASRLHE 221
Score = 65 (27.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 130 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
P RL+ + I ++G+GG +++++R+ T A+I+V
Sbjct: 280 PATEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKV 319
Score = 64 (27.6 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 290 PFP--YGSE---RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNH 344
P+P YGS G+ P + P S TP GV GG G +SSG + + N+
Sbjct: 488 PYPGGYGSSGVSAEGYSP-YGAPVGGSSSTPYGVYGGYASGRSSSSGLSSHSSTYRRRNY 546
Score = 58 (25.5 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 348 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV----NDPKPGATEG-VVMVSG 402
L S T +++P + + G+ + ++ +R+++ AN+ + N PK + + +V +SG
Sbjct: 367 LVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG 426
Query: 403 TSDQMRAA 410
D + A
Sbjct: 427 ELDVAKEA 434
Score = 52 (23.4 bits), Expect = 1.5e-31, Sum P(2) = 1.5e-31
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
G DA P +P + A T I +V P +A V G+ + ++ +RQ + A +
Sbjct: 261 GRDAGDWSRPLYQPPRNDPPA---TEFFIRLVSPVENIASVIGKGGALINQLRQETRATI 317
Query: 385 VVNDPKPGATEGVVMVS 401
V+ + + ++ +S
Sbjct: 318 KVDSSRTEGNDCLITIS 334
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 274 (101.5 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 71/176 (40%), Positives = 99/176 (56%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
E +VVFK++ G +IGK G+I+R QNETGASI + L S ER+V +SAREN E
Sbjct: 274 ERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLE 333
Query: 107 MRHSPAQDAVMRVHSRIAEI----GFEPGQ---AVV-ARLLVHSQQIGCLLGRGGHIVSE 158
R+S AQ+A+ V +R EI G PG A+V +LLV S G G E
Sbjct: 334 SRYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---E 390
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 214
ATGA + + +Q S ++ ++++ G Y VQ AL H++S+LRE + P K
Sbjct: 391 AIIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKK 446
Score = 133 (51.9 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 110 SPAQDAVMRVHSRI-AEIGFEPGQAVV--------ARLLVHSQQIGCLLGRGGHIVSEMR 160
S AQ A++RV R + + G VV +L QIG +LG GG V MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 161 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 207
R +GA IRV P P CG+ +DE++Q+ G+ +V+ AL ++S ++
Sbjct: 167 RNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210
Score = 125 (49.1 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T+E+ + + + +YG + + + +++QISGANV V DP TE V++SG +Q R A
Sbjct: 565 TLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPT--GTEATVLISGNPEQARTAM 622
Query: 412 SLIHAFI 418
SLI + +
Sbjct: 623 SLIESIL 629
Score = 91 (37.1 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 130 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 189
P + + R++ H+ IG ++G G++VS++RR TG I ++P GS H +V ++
Sbjct: 22 PDETAI-RVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC----ESPVNGSDH-WVVFIV 75
Query: 190 GNYHSVQDALFHITSRLRE 208
G+ Q L +T R+ E
Sbjct: 76 GSTAVNQSIL--LTDRVGE 92
Score = 81 (33.6 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVI 99
+E +++CH +G +IG G +V + ETG I + S+ +V I
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFI 74
Score = 60 (26.2 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI 85
+EE +L +++G+++G GG V + +GA I++
Sbjct: 137 DEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV 175
Score = 52 (23.4 bits), Expect = 1.3e-10, Sum P(3) = 1.3e-10
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 335 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 394
R+ P + GN +++ + + G+ + + ++ +GA++ V P +
Sbjct: 263 RHLPYDGGNSTE--RKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSG 320
Query: 395 EGVVMVS 401
E VV VS
Sbjct: 321 ERVVTVS 327
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 263 (97.6 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 66/180 (36%), Positives = 97/180 (53%)
Query: 37 TVGGRNRMF--YEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEE 94
TVGG + + + E VF++L KVGS+IG+ G +++ ET A IKI D P + E
Sbjct: 172 TVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTE 231
Query: 95 RIVVISARENSEMRHSPAQDAVMRVHSRIAE-IGFEPGQA-----VVARLLVHSQQIGCL 148
R V++S +E E P+ D ++RVH RI + + E QA V RLLV + Q G L
Sbjct: 232 RAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSL 291
Query: 149 LGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+G+ G V ++ A+ +RV + P D +V+V+G SV AL I S LR+
Sbjct: 292 IGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRK 351
Score = 125 (49.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 53/176 (30%), Positives = 75/176 (42%)
Query: 258 MDRGMGPSQPFDHQAAF-SHGMDPMVPPNSDRIPFPYGSERP------GHGPTFDRPPSP 310
+DR + P F++Q + MD M PP+ P P G GH P P P
Sbjct: 354 VDRSIIPF--FENQMQKPTRQMDHMPPPHQSWGP-PQGHAPSVGGGGYGHNPPPYMQPPP 410
Query: 311 R--SWTPQGVGGGDP------RGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYM 362
R S+ P P +G A P N V S + T ++ IP Y
Sbjct: 411 RHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAP-PMVAQQVTQQMQIPLSYA 469
Query: 363 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 418
V G + SN+S+ R++SGA V + + + E V VSGT Q++ A LI F+
Sbjct: 470 DAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 293 (108.2 bits), Expect = 9.6e-25, P = 9.6e-25
Identities = 67/196 (34%), Positives = 105/196 (53%)
Query: 20 YAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNET 79
+ PG + H R + E +C + VG +IGKGG + + ET
Sbjct: 239 HQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQET 298
Query: 80 GASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAE-IGFEPGQ-AVVAR 137
GA+I++ D ++ I+ IS++E E + SPA +A +R+ R +E +G + A+ R
Sbjct: 299 GATIRVNTSETDDDDCIIFISSKEFYEDQ-SPAVNAAIRLQQRCSEKVGKDANDLAISTR 357
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
LLV S QIGCL+G+GG ++SEMR T A+IR+ K+ P+ +E+VQ+ G+ +
Sbjct: 358 LLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMK 417
Query: 198 ALFHITSRLRETIFPM 213
AL + RLR F M
Sbjct: 418 ALTQVILRLRANSFDM 433
Score = 170 (64.9 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 41/111 (36%), Positives = 61/111 (54%)
Query: 111 PAQDAVMRVHSRI-AEIGFEPG----------QAVVARLLVHSQQIGCLLGRGGHIVSEM 159
PA DA+ +VH + A+ + G Q V R+LV S QIGC++G+GG ++ +
Sbjct: 112 PALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNL 171
Query: 160 RRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRLRE 208
R T A IRV KD P C HDE++ +IG V++AL+ + S L +
Sbjct: 172 RNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 221
Score = 147 (56.8 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 31/84 (36%), Positives = 51/84 (60%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEM 107
E+ V++ LC + K GS+IGKGG I + ++ET ++++I + LP EER+V + + N E+
Sbjct: 42 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYST-NEEL 100
Query: 108 RH--------SPAQDAVMRVHSRI 123
H PA DA+ +VH +
Sbjct: 101 NHFGDDGELVCPALDALFKVHDMV 124
Score = 91 (37.1 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 42 NRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIK-IADILP 90
N + ++ V ++L D++G +IGKGG +++ +N+T A I+ I D LP
Sbjct: 138 NDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 187
Score = 79 (32.9 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 22/94 (23%), Positives = 43/94 (45%)
Query: 81 ASIKIADILPDSEERIVVISARENSEMRHSPA----QDAVMRVHSRIA-EIGFEPGQAVV 135
A ++A +L D+ R + +S H P A+ H A +
Sbjct: 211 ALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADAREFC 270
Query: 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
+ ++ +G ++G+GG ++++R+ TGA+IRV
Sbjct: 271 VCFICPAENVGGVIGKGGGFINQIRQETGATIRV 304
Score = 52 (23.4 bits), Expect = 3.4e-22, Sum P(3) = 3.4e-22
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS---DQMRAAQS 412
+ P + V G+ ++ IRQ +GA + VN + + ++ +S DQ A +
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNA 333
Query: 413 LI 414
I
Sbjct: 334 AI 335
Score = 43 (20.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKP 391
+ T+ +++P + V G+ + ++R + A + V+ D P
Sbjct: 145 TVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLP 187
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 206 (77.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 53/167 (31%), Positives = 91/167 (54%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR 108
+ VF+++ + KVG++IG+ G ++ ET A IK+ D ++ +RIV+IS +E E
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAY 132
Query: 109 HSPAQDAVMRVHSRIAEI------GFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMR 160
SPA DAV+RV R++ + + +V + RLLV S Q L+G+ G ++ +
Sbjct: 133 MSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIV 192
Query: 161 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 207
+GAS+R+ +++ P + + IV + G + AL I LR
Sbjct: 193 ENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLR 239
Score = 106 (42.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 335 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 394
R+ P + +A +T + + IP Y + G +N+++IR+ SGA + + + P
Sbjct: 325 RHSPGLARVSSAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKE-SPHPD 383
Query: 395 EGVVMVSGTSDQMRAAQSLIHAFIL 419
+ V + GT+ Q++ A+ LI FI+
Sbjct: 384 QITVEIKGTTSQVQTAEQLIQEFII 408
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 245 (91.3 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 73/267 (27%), Positives = 131/267 (49%)
Query: 30 SSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL 89
SS P GG +R EE+VFK+LC L + +IGKGGS ++ + +G+ I++ D
Sbjct: 295 SSLPVTHGFGGSSR---SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSR 351
Query: 90 PD--SEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGC 147
+E +++++A E+ + S A +AV+ + I + E + V +LLV S+ IGC
Sbjct: 352 TKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGC 408
Query: 148 LLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 207
++G+ G +++E+R+ T A+I + K + D++V+V G SV+DAL I RLR
Sbjct: 409 VIGKSGSVINEIRKRTNANICI-SKGKK-------DDLVEVSGEVSSVRDALIQIVLRLR 460
Query: 208 ETIF-------PMKRPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPFHSMDR 260
E + K P + S+L + G F + D
Sbjct: 461 EDVLGDKDSVATRKPPARTDNCSFLSGSSNAGYTLPSFMSSMASTSGFHG-YGSFPAGDN 519
Query: 261 GMGPSQPFDH-QAAFSHGMDPMVPPNS 286
+G + P+ + + S ++ ++P ++
Sbjct: 520 VLGSTGPYSYGRLPSSSALEILIPAHA 546
Score = 148 (57.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 44/138 (31%), Positives = 71/138 (51%)
Query: 283 PPNSDRIPFPYGSERPGHG-PTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVES 341
P +D F GS G+ P+F + S G G P G D G T P
Sbjct: 476 PARTDNCSFLSGSSNAGYTLPSFMSSMASTSGF-HGYGSF-PAG-DNVLGSTG---PYSY 529
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 401
G + +S+ +E++IP M+ V G+ NL +IR+ISGA + ++ K + + ++S
Sbjct: 530 GR---LPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLS 586
Query: 402 GTSDQMRAAQSLIHAFIL 419
GT +QMR A++L+ AF++
Sbjct: 587 GTLEQMRCAENLVQAFVM 604
Score = 126 (49.4 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 30/88 (34%), Positives = 50/88 (56%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVI--SAREN 104
+E VV+++LC +D VG +IGK G ++ ++ T A IK+ D L +R++ I S +E
Sbjct: 33 DELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEK 92
Query: 105 SE------MRHSP---AQDAVMRVHSRI 123
E + P AQDA+++V+ I
Sbjct: 93 QEEIGFTKSENEPLCCAQDALLKVYDAI 120
Score = 118 (46.6 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
Identities = 39/144 (27%), Positives = 65/144 (45%)
Query: 72 VRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPG 131
++ F G S ++ I +E+ I ++ AQDA+++V+ I E
Sbjct: 69 IKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENN 128
Query: 132 QAV--------VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA-PR--CGS 180
RLLV Q L+G+ G + +RR T AS++V KD + P C
Sbjct: 129 TKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAM 188
Query: 181 PHDEIVQVIGNYHSVQDALFHITS 204
+D +V + G SV+ ALF +++
Sbjct: 189 EYDNVVVISGEPESVKQALFAVSA 212
Score = 74 (31.1 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP--KPGATEGVVMVSGTS--DQMRA 409
+V+ P + V G+ S + IR+ SG+ + VND K G E V++V+ T D M++
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKS 374
Score = 72 (30.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 122 RIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
RI+ + VV R+L +G ++G+ G +++ +R T A I+VF DQ C
Sbjct: 24 RISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF--DQLHGC 78
Score = 67 (28.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA--DILPDSE------ERIVVISAREN 104
+LL + SLIGK G ++ + T AS+K+ D+ S + +VVIS
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 105 SEMRHSPAQDAVM-RVHSR 122
S + A A+M +++ R
Sbjct: 202 SVKQALFAVSAIMYKINPR 220
Score = 54 (24.1 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 410
+++++ + V G++ S ++ IR+ + AN+ ++ G + +V VSG +R A
Sbjct: 397 MQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK---GKKDDLVEVSGEVSSVRDA 451
Score = 46 (21.3 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-----NDPKPGAT---EGVVMVSGTSDQ 406
+++P + + G+ N+ IR+ + A+V V +DP + VV++SG +
Sbjct: 143 LLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPES 202
Query: 407 MRAAQSLIHAFI 418
++ A + A +
Sbjct: 203 VKQALFAVSAIM 214
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 153 (58.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 46/163 (28%), Positives = 83/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + ++S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G SV + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGVPQSVTECVKQICLVMLETL 170
Score = 114 (45.2 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 149 (57.5 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G S+ + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETL 170
Score = 110 (43.8 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 38/139 (27%), Positives = 65/139 (46%)
Query: 283 PPNSDRIPF-PYGSERP-----GHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 336
PP IP+ P S P G + +S P G G ++SS P
Sbjct: 174 PPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSS---PEV 230
Query: 337 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 396
+ +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+
Sbjct: 231 KGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR 289
Query: 397 VVMVSGTSDQMRAAQSLIH 415
V ++G++ + AQ LI+
Sbjct: 290 QVTITGSAASISLAQYLIN 308
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 149 (57.5 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G S+ + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETL 170
Score = 110 (43.8 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 266 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 322
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 185 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 242
Query: 323 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 243 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 301
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 302 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 340
Score = 42 (19.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 295 SERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
S+ P G T P P S +P GG R G D++S F P P
Sbjct: 171 SQSPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 214
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 153 (58.9 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 42/123 (34%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 72
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + EMR +TGA
Sbjct: 73 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQ 132
Query: 167 IRV 169
++V
Sbjct: 133 VQV 135
Score = 114 (45.2 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTIS 151
Score = 102 (41.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 332 FTP--RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 389
FTP + P G A+ ST E+ IP + + G + ++ IRQ+SGA + + +
Sbjct: 247 FTPLGQTTPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA 305
Query: 390 KPGATEGVVMVSGTSDQMRAAQSLIHA 416
G++E + ++GT + AQ LI+A
Sbjct: 306 MEGSSERQITITGTPANISLAQYLINA 332
Score = 76 (31.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 271 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSSERQIT-ITGTPANISL 325
Query: 198 ALFHITSRLRE 208
A + I +R R+
Sbjct: 326 AQYLINARFRD 336
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 147 (56.8 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 39/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMRV-HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + V S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEVISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 106 (42.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 341 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 400
SG+ A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V +
Sbjct: 228 SGSLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 287
Query: 401 SGTSDQMRAAQSLIH 415
+G++ + AQ LI+
Sbjct: 288 TGSAASISLAQYLIN 302
Score = 105 (42.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 81 (33.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 236 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 290
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 291 AASISLAQYLINVRL 305
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 145 (56.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 109 (43.4 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 229 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 287
Query: 385 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 288 KIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 105 (42.0 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 81 (33.6 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 252 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 306
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 307 AASISLAQYLINVRL 321
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 145 (56.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 110 (43.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 266 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 322
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 181 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 238
Query: 323 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 297
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 298 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
Score = 105 (42.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 81 (33.6 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 270 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 324
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 325 AASISLAQYLINVRL 339
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 296 ERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
E P G T P P S +P GG R G D++S F P P
Sbjct: 168 ESPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 210
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 149 (57.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G S+ + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETL 170
Score = 100 (40.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346
Query: 410 AQSLIH 415
AQ LI+
Sbjct: 347 AQYLIN 352
Score = 42 (19.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 295 SERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
S+ P G T P P S +P GG R G D++S F P P
Sbjct: 171 SQSPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 214
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 149 (57.5 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G S+ + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETL 170
Score = 100 (40.3 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346
Query: 410 AQSLIH 415
AQ LI+
Sbjct: 347 AQYLIN 352
Score = 42 (19.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 295 SERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
S+ P G T P P S +P GG R G D++S F P P
Sbjct: 171 SQSPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 214
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 149 (57.5 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
+V D P + + + + G S+ + + I + ET+
Sbjct: 132 QV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLETL 170
Score = 103 (41.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 333 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 392
T N +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G
Sbjct: 228 THGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 286
Query: 393 ATEGVVMVSGTSDQMRAAQSLIH 415
+T+ V ++G++ + AQ LI+
Sbjct: 287 STDRQVTITGSAASISLAQYLIN 309
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 145 (56.1 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 109 (43.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 260 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 318
Query: 385 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 319 KIANPVEGSTDRQVTITGSAASISLAQYLIN 349
Score = 105 (42.0 bits), Expect = 8.0e-10, Sum P(2) = 8.0e-10
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 81 (33.6 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 283 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 337
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 338 AASISLAQYLINVRL 352
Score = 41 (19.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 296 ERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
E P G T P P S +P GG R G D++S F P P
Sbjct: 168 ESPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 210
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 149 (57.5 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 70
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 167 IRV 169
++V
Sbjct: 131 VQV 133
Score = 114 (45.2 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 101 (40.6 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 241 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 300
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 301 AQYLINARLTSEVT 314
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 246 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 300
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 301 AQYLINARLTSEVTGM 316
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 149 (57.5 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 22 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 78
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 79 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 138
Query: 167 IRV 169
++V
Sbjct: 139 VQV 141
Score = 114 (45.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 157
Score = 101 (40.6 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 244 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 303
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 304 AQYLINARLTSEVT 317
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 249 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 303
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 304 AQYLINARLTSEVTGM 319
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 145 (56.1 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 105 (42.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 103 (41.3 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 333 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 392
T N +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G
Sbjct: 224 THGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 282
Query: 393 ATEGVVMVSGTSDQMRAAQSLIH 415
+T+ V ++G++ + AQ LI+
Sbjct: 283 STDRQVTITGSAASISLAQYLIN 305
Score = 81 (33.6 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 239 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 293
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 294 AASISLAQYLINVRL 308
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 149 (57.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 70
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 167 IRV 169
++V
Sbjct: 131 VQV 133
Score = 114 (45.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 101 (40.6 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 77 (32.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 342
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 343 AQYLINARLTSEVTGM 358
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 149 (57.5 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 70
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 71 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 130
Query: 167 IRV 169
++V
Sbjct: 131 VQV 133
Score = 114 (45.2 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 101 (40.6 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 77 (32.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 288 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 342
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 343 AQYLINARLTSEVTGM 358
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 149 (57.5 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 102
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 167 IRV 169
++V
Sbjct: 163 VQV 165
Score = 114 (45.2 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 181
Score = 101 (40.6 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 297 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 351
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 352 AQYLINARLTSEVTGM 367
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 149 (57.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 102
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 167 IRV 169
++V
Sbjct: 163 VQV 165
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 181
Score = 101 (40.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 352
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 353 AQYLINARLTSEVTGM 368
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 149 (57.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 102
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 167 IRV 169
++V
Sbjct: 163 VQV 165
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 181
Score = 101 (40.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 352
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 353 AQYLINARLTSEVTGM 368
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 149 (57.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 102
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 167 IRV 169
++V
Sbjct: 163 VQV 165
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 181
Score = 101 (40.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 352
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 353 AQYLINARLTSEVTGM 368
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 149 (57.5 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 41/123 (33%), Positives = 67/123 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFK- 102
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + P + V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 103 AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQ 162
Query: 167 IRV 169
++V
Sbjct: 163 VQV 165
Score = 114 (45.2 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 181
Score = 101 (40.6 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 77 (32.2 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 298 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 352
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 353 AQYLINARLTSEVTGM 368
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 204 (76.9 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 96/400 (24%), Positives = 167/400 (41%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ +SA ++
Sbjct: 41 DEMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSVSADIDT- 97
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ ++++ + E G RLL+H G ++G G + E+R T
Sbjct: 98 -----IGEILLKIIPTLEEYQHYSGTDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 152
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V V G V + + I + E P+K R P +
Sbjct: 153 TTIKLFQE-----C-CPHSTDRVVLVGGKPERVVECIKVILELIAEA--PIKGRAQPYDP 204
Query: 222 HSYLXXXXXXXXXXXXXXXXXXXXGSYPSPV-GPFHSMDRGMG-----PSQ-PFDHQAAF 274
+ Y G +P G F M G G PS+ +D +
Sbjct: 205 NFYDETYDYGGFTMMYEERGRRPMGGFPMRGRGGFDRMPPGRGSRSVPPSRRDYDDMSP- 263
Query: 275 SHGMDPMVPPNSDR-------IPFP-----YGSERPGHGP---TFDRPPSPRSWTP---- 315
G P P R +P P G +R H D P+ R P
Sbjct: 264 RRGPPPPPPGRGGRGGSRARNLPLPPPPPPRGGDRFSHQSYHSNMDDRPNDRRGRPGDRY 323
Query: 316 QGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTST-TIEVVIPQLYMAHVYGENNSNLS 374
+ + GG G+D +S + P G+++ I T +V IP+ + G+ +
Sbjct: 324 ESMSGG---GYDNNSSWEPFQSGGR-GSYSDIGGPVITTQVTIPKDLAGSIIGKGGQRIK 379
Query: 375 HIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 414
IR SGA++ +++P G+ + ++ ++GT DQ++ AQ L+
Sbjct: 380 QIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 419
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 204 (76.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 65/211 (30%), Positives = 106/211 (50%)
Query: 9 PPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKG 68
PPAA P+H GY S Y P H+ + Y E+ + L VG++IGK
Sbjct: 391 PPAA-PYHPFTTHSGYFSSLY---PHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 446
Query: 69 GSIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127
G+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E
Sbjct: 447 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEEN 500
Query: 128 F-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 184
F P + V A + V S G ++G+GG V+E++ T A + + P+DQ P +
Sbjct: 501 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEV 557
Query: 185 IVQVIGNYHSVQDALFHITSRLRETIFPMKR 215
IV++IG++ + Q A ++RE + +K+
Sbjct: 558 IVRIIGHFFASQTA----QRKIREIVQQVKQ 584
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 204 (76.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 65/211 (30%), Positives = 106/211 (50%)
Query: 9 PPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKG 68
PPAA P+H GY S Y P H+ + Y E+ + L VG++IGK
Sbjct: 397 PPAA-PYHPFTTHSGYFSSLY---PHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKK 452
Query: 69 GSIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127
G+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E
Sbjct: 453 GAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEEN 506
Query: 128 F-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 184
F P + V A + V S G ++G+GG V+E++ T A + + P+DQ P +
Sbjct: 507 FFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEV 563
Query: 185 IVQVIGNYHSVQDALFHITSRLRETIFPMKR 215
IV++IG++ + Q A ++RE + +K+
Sbjct: 564 IVRIIGHFFASQTA----QRKIREIVQQVKQ 590
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 202 (76.2 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P A P+H GY S Y P H+ + Y E+ + L VG++IGK G
Sbjct: 290 PPAPPYHPFATHSGYFSSLY---PPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKG 346
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 347 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 400
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 401 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 457
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 458 VRIIGHFFASQTA----QRKIREIVQQVKQ 483
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 202 (76.2 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P A P+H GY S Y P H+ + Y E+ + L VG++IGK G
Sbjct: 312 PPAPPYHPFATHSGYFSSLY---PPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKG 368
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 369 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 422
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 423 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 479
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 480 VRIIGHFFASQTA----QRKIREIVQQVKQ 505
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 202 (76.2 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P A P+H GY S Y P H+ + Y E+ + L VG++IGK G
Sbjct: 316 PPAPPYHPFATHSGYFSSLY---PPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKG 372
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 373 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 426
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 427 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 483
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 484 VRIIGHFFASQTA----QRKIREIVQQVKQ 509
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 202 (76.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P A P+H GY S Y P H+ + Y E+ + L VG++IGK G
Sbjct: 323 PPAPPYHPFATHSGYFSSLY---PPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKG 379
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 380 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 433
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 434 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 490
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 491 VRIIGHFFASQTA----QRKIREIVQQVKQ 516
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 202 (76.2 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 63/210 (30%), Positives = 104/210 (49%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P A P+H GY S Y P H+ + Y E+ + L VG++IGK G
Sbjct: 391 PPAPPYHPFATHSGYFSSLY---PPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKG 447
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 448 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 501
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 502 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 558
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 559 VRIIGHFFASQTA----QRKIREIVQQVKQ 584
>UNIPROTKB|K7GM69 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000034893 Uniprot:K7GM69
Length = 202
Score = 179 (68.1 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 52/167 (31%), Positives = 88/167 (52%)
Query: 46 YEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL-PDSEERIVVISAREN 104
Y E+ + L VG++IGK G+ ++ GASIKIA PD ER+V+I+
Sbjct: 19 YPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 78
Query: 105 SEMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRR 161
++ + AQ R+ ++ E F P + V A + V S G ++G+GG V+E++
Sbjct: 79 AQFK---AQG---RIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQN 132
Query: 162 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD---ALFHITSR 205
T A + + P+DQ P + IV++IG++ + Q + +HIT +
Sbjct: 133 LTSAEV-IVPRDQTP--DENEEVIVRIIGHFFASQAKQCSEYHITQK 176
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 139 (54.0 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 43/156 (27%), Positives = 78/156 (50%)
Query: 57 HLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDA 115
H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ + + D
Sbjct: 2 HGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKAFAMIIDK 59
Query: 116 VMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 174
+ + S + V RL+V + Q G L+G+GG + E+R +TGA ++V D
Sbjct: 60 LEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDM 118
Query: 175 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
P + + + + G S+ + + I + ET+
Sbjct: 119 LP---NSTERAITIAGIPQSIIECVKQICVVMLETL 151
Score = 105 (42.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 130
Score = 100 (40.3 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 223 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 282
Query: 410 AQSLIH 415
AQ LI+
Sbjct: 283 AQYLIN 288
Score = 81 (33.6 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 222 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 276
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 277 AASISLAQYLINVRL 291
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 142 (55.0 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITGPTDAIFKA 71
Query: 110 SP--AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
A +++ + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 114 (45.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 96 (38.9 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 332 FTPRNRPVESGNHAAILTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 389
FTP + TS T E+ IP + + G S ++ IRQ+SGA + + +
Sbjct: 221 FTPLGQTTPGFPERLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANA 280
Query: 390 KPGATEGVVMVSGTSDQMRAAQSLIHA 416
G+ E V ++G+ + AQ LI+A
Sbjct: 281 TEGSAERQVTITGSPANISLAQYLINA 307
Score = 74 (31.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS ++ + G+ ++
Sbjct: 246 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE----GSAERQVT-ITGSPANISL 300
Query: 198 ALFHITSRLRETI 210
A + I +R T+
Sbjct: 301 AQYLINARAVVTV 313
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 142 (55.0 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ ERIV I+ ++ +
Sbjct: 13 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITGPTDAIFKA 70
Query: 110 SP--AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
A +++ + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 71 FSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 130
Query: 168 RV 169
+V
Sbjct: 131 QV 132
Score = 114 (45.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 148
Score = 98 (39.6 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
Identities = 33/104 (31%), Positives = 52/104 (50%)
Query: 323 PRGFDASSGFTPRNRPVESGNHAAI-LTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQI 379
P G + GF P + P S H + TS T E+ IP + + G S ++ IRQ+
Sbjct: 253 PLG-QTTPGF-PAHFP--SVPHIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQM 308
Query: 380 SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 423
SGA + + + G+ E V ++G+ + AQ LI+A + VT
Sbjct: 309 SGAQIKIANATEGSAERQVTITGSPANISLAQYLINARLSSEVT 352
Score = 77 (32.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 19/73 (26%), Positives = 40/73 (54%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS ++ + G+ ++
Sbjct: 284 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANATE----GSAERQVT-ITGSPANISL 338
Query: 198 ALFHITSRLRETI 210
A + I +RL +
Sbjct: 339 AQYLINARLSSEV 351
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 142 (55.0 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GSCPERIVTITGPTDAIFKA 71
Query: 110 SP--AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
A +++ + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FSMIALKFEEDINASMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 114 (45.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 96 (38.9 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 331 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 390
G T PV A +++ E+ IP + + G S ++ IRQ+SGA + + +
Sbjct: 225 GQTTPGFPVPHIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANAT 284
Query: 391 PGATEGVVMVSGTSDQMRAAQSLIHAFILC 420
G+ E V ++G+ + AQ LI+A C
Sbjct: 285 EGSAERQVTITGSPANISLAQYLINARANC 314
Score = 72 (30.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
L + + IGC++GR G ++E+R+ +GA I++
Sbjct: 249 LTIPNDLIGCIIGRQGSKINEIRQMSGAQIKI 280
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 194 (73.4 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 96/435 (22%), Positives = 172/435 (39%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVV-FKLLCHLDKVGSLIGKG 68
P +P + ++ S G S E R +E+V ++L G++IGKG
Sbjct: 3 PENDPQEEETFS-NKESNGKRSADDSEEEKPYKRSRNSDEMVELRILLQSKNAGAVIGKG 61
Query: 69 GSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
G ++ + + A++ + D ERI+ +SA + + ++++ + E
Sbjct: 62 GKNIKALRTDYNATVSVPD--SSGPERILSVSADIPT------VAEILLKIIPTLEEYQH 113
Query: 129 EPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
G RLL+H G ++G G + E+R +T +I++F + C D +V
Sbjct: 114 HKGVDFDCELRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQEC----CPQSTDRVV 169
Query: 187 QVIGNYHSVQDALFHITSRLRETIFPMK----RPGPN--------NGHSYLXXXXXXXXX 234
V G V + + + E P+K + PN G +
Sbjct: 170 LVGGKAERVVQCIKTMLELIVEA--PIKGRAQQYDPNFYDETYDYGGFGVMYEERGRRPM 227
Query: 235 XXXXXXXXXXXGSY---PSPV--GPFHSMDR----GMGPSQ-PFDHQAAFSHGMDP---M 281
G + PS G H R + P + P Q G P M
Sbjct: 228 GGFSSRGRSSSGGFDRMPSGGRGGGHHMQSRRDYDDISPRRGPPPSQRGGGRGPRPPRNM 287
Query: 282 VPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVES 341
PP+ R Y S + GH +R R GG G+D++S + + +S
Sbjct: 288 GPPHHRRSDDQYYSSQRGHMD--ERRHGERRGRNDRYGGSMNDGYDSNSSW---DSSYQS 342
Query: 342 GNHAAILTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 399
G ++ I +V IP+ + G+ + IR SGA++ +++P G+ + ++
Sbjct: 343 GGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIIT 402
Query: 400 VSGTSDQMRAAQSLI 414
++GT DQ++ AQ L+
Sbjct: 403 ITGTQDQIQNAQYLL 417
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 143 (55.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPA 112
+LL G++IGKGG ++ + E A +++ D ++ ER+ ++A E + + +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD--SNTPERVCTVTADEKTVL--NIL 108
Query: 113 QDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 172
+D + R+ +E +P + R+LVH G L+GR G + E+R A +++F
Sbjct: 109 KDVLPRLEDNFSER--DPCEV---RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFT- 162
Query: 173 DQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 214
AP GS D ++ G +V + + L+E P+K
Sbjct: 163 GCAP--GST-DRVLITSGEQKNVLGIIEEVMKELKE--IPIK 199
Score = 95 (38.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 33/118 (27%), Positives = 49/118 (41%)
Query: 297 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVV 356
R G GP S + PQ G P +A G+ P G + TT +V
Sbjct: 275 RGGPGPVPGYAMSAPGYPPQQGQFGAPN--NAGYGYGP-------GGGGPV---TTAQVT 322
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 414
IP + G ++ IRQ SGA + + G E ++ + GT Q+ +AQ L+
Sbjct: 323 IPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-GQPERIITIKGTEQQIHSAQYLL 379
Score = 65 (27.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/65 (36%), Positives = 29/65 (44%)
Query: 264 PSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDP 323
PS D+ F M PPN+ R P P +R G GP P PRS+ GG
Sbjct: 213 PSNISDY-GGFPGNMPAGGPPNN-RGPAP---QRGGQGP----PGGPRSYGGAITQGGGQ 263
Query: 324 RGFDA 328
R F+A
Sbjct: 264 RSFEA 268
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 143 (55.4 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 43/162 (26%), Positives = 80/162 (49%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPA 112
+LL G++IGKGG ++ + E A +++ D ++ ER+ ++A E + + +
Sbjct: 53 RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQVPD--SNTPERVCTVTADEKTVL--NIL 108
Query: 113 QDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 172
+D + R+ +E +P + R+LVH G L+GR G + E+R A +++F
Sbjct: 109 KDVLPRLEDNFSER--DPCEV---RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFT- 162
Query: 173 DQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 214
AP GS D ++ G +V + + L+E P+K
Sbjct: 163 GCAP--GST-DRVLITSGEQKNVLGIIEEVMKELKE--IPIK 199
Score = 95 (38.5 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 33/118 (27%), Positives = 49/118 (41%)
Query: 297 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVV 356
R G GP S + PQ G P +A G+ P G + TT +V
Sbjct: 275 RGGPGPVPGYAMSAPGYPPQQGQFGAPN--NAGYGYGP-------GGGGPV---TTAQVT 322
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 414
IP + G ++ IRQ SGA + + G E ++ + GT Q+ +AQ L+
Sbjct: 323 IPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-GQPERIITIKGTEQQIHSAQYLL 379
Score = 65 (27.9 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 24/65 (36%), Positives = 29/65 (44%)
Query: 264 PSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDP 323
PS D+ F M PPN+ R P P +R G GP P PRS+ GG
Sbjct: 213 PSNISDY-GGFPGNMPAGGPPNN-RGPAP---QRGGQGP----PGGPRSYGGAITQGGGQ 263
Query: 324 RGFDA 328
R F+A
Sbjct: 264 RSFEA 268
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 137 (53.3 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 36/122 (29%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ + +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTTAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
S + + + S ++ V R++V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FSMIIEKLEEDISSSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 103 (41.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +++ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
Score = 96 (38.9 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 334 PRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 393
P ++ +G A+ T + E+ IP + + G + ++ IRQ+SGA + + +P G+
Sbjct: 225 PSSQGFTAGMDASAQTGSH-ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS 283
Query: 394 TEGVVMVSGTSDQMRAAQSLIHA 416
++ V ++G+ + A+ LI+A
Sbjct: 284 SDRQVTITGSPASISLAEYLINA 306
Score = 81 (33.6 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+ S+
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGSS-DRQVTITGSPASISL 299
Query: 198 ALFHITSRL 206
A + I +RL
Sbjct: 300 AEYLINARL 308
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 140 (54.3 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 48/175 (27%), Positives = 84/175 (48%)
Query: 41 RNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVIS 100
RNR EE V ++L G++IGKGG ++ + + A++ + D ER + IS
Sbjct: 17 RNRR--SEETV-RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSVDD--SQGPERTIQIS 71
Query: 101 ARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 160
A S + + + + + E + RLL+H GC++G+GG + E+R
Sbjct: 72 ADIES----------TLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIR 121
Query: 161 RATGAS-IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 214
G ++VF + AP+ D +VQ +G V +A+ + + R+T P+K
Sbjct: 122 DRIGCRFLKVF-SNVAPQST---DRVVQTVGKQSQVIEAVREVITLTRDT--PIK 170
Score = 100 (40.3 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 319 GGGDPRGFDASSGFT--PRNRPVESGN-HAAILTSTTIEVVIPQLYMAHVYGENNSNLSH 375
G GF+A G P P + N + + +V IP+ + G+ +
Sbjct: 386 GANGAGGFNAVGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRR 445
Query: 376 IRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 414
IR S A + +++P P + + ++ +SGT Q++ AQ L+
Sbjct: 446 IRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLL 484
Score = 39 (18.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 15/46 (32%), Positives = 18/46 (39%)
Query: 286 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG 331
+DR G G G P W G GGGD GF ++G
Sbjct: 243 ADRFGGAAGGAVAGAGMGQRDNPFINPWA-NG-GGGDVDGFGNNAG 286
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 194 (73.4 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 62/210 (29%), Positives = 102/210 (48%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P + P+H GY S Y P H + Y E+ L VG++IGK G
Sbjct: 384 PPSPPYHPFATHSGYFSSLY---PHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKKG 440
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 441 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 494
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 495 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 551
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 552 VRIIGHFFASQTA----QRKIREIVQQVKQ 577
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 194 (73.4 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 62/210 (29%), Positives = 102/210 (48%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P + P+H GY S Y P H + Y E+ L VG++IGK G
Sbjct: 384 PPSPPYHPFATHSGYFSSLY---PHHHFGPFPHHHSYPEQETVSLFIPTQAVGAIIGKKG 440
Query: 70 SIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
+ ++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 441 AHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENF 494
Query: 129 -EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + I
Sbjct: 495 FNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVI 551
Query: 186 VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
V++IG++ + Q A ++RE + +K+
Sbjct: 552 VRIIGHFFASQTA----QRKIREIVQQVKQ 577
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 160 (61.4 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 44/153 (28%), Positives = 75/153 (49%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +L+ +VGS+IGK G IV F+ E+GA I I+D ERIV +S N+
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD--GSCPERIVTVSGTTNAIFS- 80
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
A + + ++G + RL+V + Q G L+G+ G + E+R+ TG SI+V
Sbjct: 81 --AFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQV 138
Query: 170 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202
+ P + + V + G+ + ++ I
Sbjct: 139 -ASEMLP---NSTERAVTLSGSAEQITQCIYQI 167
Score = 106 (42.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 33/122 (27%), Positives = 61/122 (50%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVISARENSEM 107
++ +L+ + GSLIGK GS ++ + TG SI++A ++LP+S ER V +S ++
Sbjct: 102 QIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAE-QI 160
Query: 108 RHSPAQDAVMRVHS--RIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
Q ++ + S R A I + P V +++ + Q + G E+ + A
Sbjct: 161 TQCIYQICLVMLESPPRGATIPYRPKPQVTGPVILANGQAFTIQGNYAVPTQEVAKNPLA 220
Query: 166 SI 167
S+
Sbjct: 221 SL 222
Score = 92 (37.4 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 129 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 188
+P + RL++ +++G ++G+ G IV+ R +GA I + D GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SD-----GSCPERIVTV 71
Query: 189 IGNYHSVQDALFHITSRLRE 208
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
Score = 90 (36.7 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 330 SGFTPRNRPVESGNHAAILTSTTIEV--VIPQLYMAHVYGENNSNLSHIRQISGANV-VV 386
S FT + E N + T I + ++P + G++ S + IRQ +G ++ V
Sbjct: 80 SAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVA 139
Query: 387 NDPKPGATEGVVMVSGTSDQM 407
++ P +TE V +SG+++Q+
Sbjct: 140 SEMLPNSTERAVTLSGSAEQI 160
Score = 78 (32.5 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN---DPKPGATEGVVMVSGTSDQMRAA 410
E+ + + + G+ + ++ IRQISGA + ++ + + G T+ + +SG D + A
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 411 QSLIH 415
Q LI+
Sbjct: 349 QYLIN 353
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 138 (53.6 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 39/123 (31%), Positives = 65/123 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+ A I +++ + ERIV I+ ++ +
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESSARINVSE--GNCPERIVTITGPTDAIFK- 72
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 166
+ A A I + + V RL+V + Q G L+G+GG + EMR +TGA
Sbjct: 73 AFAMIAYKFEEDIINSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQ 132
Query: 167 IRV 169
++V
Sbjct: 133 VQV 135
Score = 114 (45.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVTIS 151
Score = 94 (38.1 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G+++ + ++GT +
Sbjct: 266 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISL 325
Query: 410 AQSLIHA 416
AQ LI+A
Sbjct: 326 AQYLINA 332
Score = 82 (33.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 22/77 (28%), Positives = 41/77 (53%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
QA L + + IGC++GR G ++E+R+ +GA I++ + GS D + + G
Sbjct: 265 QASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAME----GSS-DRQITITGT 319
Query: 192 YHSVQDALFHITSRLRE 208
++ A + I +R R+
Sbjct: 320 PANISLAQYLINARFRD 336
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 190 (71.9 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 63/209 (30%), Positives = 103/209 (49%)
Query: 13 EPFHQRGYAPGYHSRGYSSG--PGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGS 70
E F A HS GY S P H+ + Y E+ + L VG++IGK G+
Sbjct: 268 EAFENDMLAVNTHS-GYFSSLYPPHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGA 326
Query: 71 IVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF- 128
++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 327 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENFF 380
Query: 129 EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + IV
Sbjct: 381 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVIV 437
Query: 187 QVIGNYHSVQDALFHITSRLRETIFPMKR 215
++IG++ + Q A ++RE + +K+
Sbjct: 438 RIIGHFFASQTA----QRKIREIVQQVKQ 462
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 190 (71.9 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 63/209 (30%), Positives = 103/209 (49%)
Query: 13 EPFHQRGYAPGYHSRGYSSG--PGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGS 70
E F A HS GY S P H+ + Y E+ + L VG++IGK G+
Sbjct: 347 EAFENDMLAVNTHS-GYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGA 405
Query: 71 IVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF- 128
++ GASIKIA PD ER+V+I+ ++ + AQ R+ ++ E F
Sbjct: 406 HIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFK---AQG---RIFGKLKEENFF 459
Query: 129 EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
P + V A + V S G ++G+GG V+E++ T A + + P+DQ P + IV
Sbjct: 460 NPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEVIV 516
Query: 187 QVIGNYHSVQDALFHITSRLRETIFPMKR 215
++IG++ + Q A ++RE + +K+
Sbjct: 517 RIIGHFFASQTA----QRKIREIVQQVKQ 541
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 190 (71.9 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 65/211 (30%), Positives = 105/211 (49%)
Query: 11 AAEPFHQRGYAPGYHSRGYSSGPGHETVGG--RNRMFYEEEVVFKLLCHLDKVGSLIGKG 68
AA P+H + Y S Y + P VG E+EVV L VG++IGK
Sbjct: 365 AAAPYHPFASSSAYLSGLYGASP----VGAFPHQHPLPEQEVV-NLFIPTQAVGAIIGKK 419
Query: 69 GSIVRTFQNETGASIKIADIL-PDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127
G ++ GASIKIA PD+ ER+V+I+ ++ + AQ R+ ++ E
Sbjct: 420 GQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFK---AQG---RIFGKLKEEN 473
Query: 128 F-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 184
F P + V A + V S G ++G+GG V+E++ T A + + P+DQ P +
Sbjct: 474 FFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTP--DENEEV 530
Query: 185 IVQVIGNYHSVQDALFHITSRLRETIFPMKR 215
IV++IG++ + Q A ++RE + +K+
Sbjct: 531 IVKIIGHFFASQTA----QRKIREIVQQVKQ 557
Score = 106 (42.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 44/200 (22%), Positives = 91/200 (45%)
Query: 11 AAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGS 70
++ P QR G+ SR S PG G ++ + + ++L VG++IGK G
Sbjct: 134 SSPPPPQRSRRGGHASREQGSSPG-----GSSQP-KQLDFPLRMLVPTQFVGAIIGKEGL 187
Query: 71 IVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
++ +T + + I + +E+ I + + E S A ++ + + A+
Sbjct: 188 TIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGC----SEACRMILDIMQKEAD-ET 242
Query: 129 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 188
+ + + ++L H+ +G L+G+ G + ++ + TG I + P Q +P + + V
Sbjct: 243 KSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL-QDLTIYNP-ERTITV 300
Query: 189 IGNYHSVQDALFHITSRLRE 208
G+ + +A I +LRE
Sbjct: 301 KGSTEACSNAEVEIMKKLRE 320
Score = 67 (28.6 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 25/111 (22%), Positives = 48/111 (43%)
Query: 310 PRSWTPQGVGGGDP-RGFDASSGFTPR---NRPVESGNHAAILTST-TIEVVIPQLYMAH 364
P S +G P F +SS + PV + H L + + IP +
Sbjct: 355 PSSAGARGAAAAAPYHPFASSSAYLSGLYGASPVGAFPHQHPLPEQEVVNLFIPTQAVGA 414
Query: 365 VYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQSLI 414
+ G+ ++ + + +GA++ + + P ATE +V+++G + AQ I
Sbjct: 415 IIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQGRI 465
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 167 (63.8 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 48/138 (34%), Positives = 73/138 (52%)
Query: 80 GASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEP--------- 130
G ++ I +SEER + +++E PA DA+ +VH + F+
Sbjct: 9 GCDERVVTIYSNSEERNRI---EDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYNDNDE 65
Query: 131 ---GQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP--HDE 184
GQ VV R+LV S QIG L+G+GG I+ +R T A IRV D P C HDE
Sbjct: 66 YSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDE 124
Query: 185 IVQVIGNYHSVQDALFHI 202
++Q+IG+ +V++AL+ +
Sbjct: 125 LLQIIGDPSAVREALYQV 142
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 167 (63.8 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 55/199 (27%), Positives = 91/199 (45%)
Query: 35 HETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEE 94
+E GG + + +LL H +VGS+IGK G V+ + E+GA I I+D S E
Sbjct: 2 NEREGGVSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISD--GSSPE 59
Query: 95 RIVVISARENSEMRHSP--AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRG 152
RIV I+ + A+ + + + V RL+ + Q G L+G+G
Sbjct: 60 RIVTITGASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPVTLRLVFPASQCGSLIGKG 119
Query: 153 GHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--- 209
G + E+R +TGA ++V D P + V + G H++ + HI + + E+
Sbjct: 120 GSKIKEIRESTGAQVQV-AGDLLP---DSTERAVTISGTPHAITQCVKHICTVMLESPPK 175
Query: 210 --IFPMK-RPGPNNGHSYL 225
P + +P GH+ L
Sbjct: 176 GATIPYRPKPSAGGGHTVL 194
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 160 (61.4 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 61/220 (27%), Positives = 96/220 (43%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEE-EVVFKLLCHLDKVG 62
Q P PP A P AP R + P E V + EE E K+L G
Sbjct: 53 QQQP-PPQAPPMESE--APDSRKRPLETPP--EVVCTKRSNTGEEGEYFLKVLIPSYAAG 107
Query: 63 SLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMRHSPAQDAVMR 118
S+IGKGG + Q ETGA+IK++ D P + ER+ ++ E HS + V
Sbjct: 108 SIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVRE 167
Query: 119 VHSRIA--EI--------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 168
+ + E+ P +A A+L+V + G ++G+GG V + +GA ++
Sbjct: 168 IPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQ 227
Query: 169 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ Q P + + +V V G V A+ I +++E
Sbjct: 228 L---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQE 264
Score = 71 (30.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 317 GVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
G GGG A++ + + AA +E+ +P+ + + G+ L
Sbjct: 435 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 494
Query: 377 RQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLI 414
++++GA + ++ PG V ++G+ +AAQ LI
Sbjct: 495 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 535
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 126 (49.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 36/122 (29%), Positives = 64/122 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G + + ++GA I I++ + ERIV I+ ++ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINISE--GNCPERIVTITGPTDAIFKA 71
Query: 110 SP--AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
A + + ++ V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIAYKFEEDITNSMSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 114 (45.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGGS ++ + TGA +++A D+LP+S ER V IS
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTIS 149
Score = 101 (40.6 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320
Query: 410 AQSLIHAFILCGVT 423
AQ LI+A + VT
Sbjct: 321 AQYLINARLTSEVT 334
Score = 77 (32.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 266 LTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANISL 320
Query: 198 ALFHITSRLRETIFPM 213
A + I +RL + M
Sbjct: 321 AQYLINARLTSEVTGM 336
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 148 (57.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 87/360 (24%), Positives = 144/360 (40%)
Query: 78 ETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMRVHSRIAEIGFEPGQAVVA 136
ET I + I+P EE + + S S++ S A + + H + ++ E
Sbjct: 98 ETIGEI-LKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCE------L 150
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
RLL+H G ++G G + E+R T +I++F + C D +V + G V
Sbjct: 151 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 206
Query: 197 DALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPF 255
+ + I + E+ P+K R P + + Y G G F
Sbjct: 207 ECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGF 264
Query: 256 HSMDRGMG--PSQPF--DHQAAFSHGMDPMVPPNSDRIPFPYGSERPGH---G------- 301
M G G P P D+ P PP D + + RPG G
Sbjct: 265 DRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRDLMAYDRRG-RPGDRYDGMVGFSAD 323
Query: 302 PTFDRPP---SPRSWT----PQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIE 354
T+D SP W PQG G D + + G R + G I+T+ +
Sbjct: 324 ETWDSAIDTWSPSEWQMAYEPQGGSGYD---YSYAGG---RGSYGDLGG--PIITT---Q 372
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 414
V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ L+
Sbjct: 373 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 432
Score = 89 (36.4 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 366 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 420
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 421 TQDQIQNAQYLLQNSVKQ 438
Score = 80 (33.2 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 43 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 95
Score = 72 (30.4 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI-ADILPDSEERIVVISAR 102
+LL H G +IG G+ ++ + T +IK+ + P S +R+V+I +
Sbjct: 151 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGK 201
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 122 (48.0 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 5.2e-09, Sum P(2) = 5.2e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 101 (40.6 bits), Expect = 4.5e-11, Sum P(2) = 4.5e-11
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 329 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 387
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 220 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 278
Query: 388 DPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 422
+ GA E V ++G+ + AQ LI A+ G+
Sbjct: 279 NQAEGAGERHVTITGSPVSIALAQYLITAWAAAGL 313
Score = 100 (40.3 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITS 204
V + G+ S+ A + IT+
Sbjct: 289 VTITGSPVSIALAQYLITA 307
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 140 (54.3 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 44/154 (28%), Positives = 80/154 (51%)
Query: 62 GSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISARENSEMRHSPAQDAVM- 117
GS+IGKGGS + FQ ++GA I+++ + P + +RI++IS + + ++
Sbjct: 47 GSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN---GLELILD 103
Query: 118 RVHSRI-AEIG--FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 174
++HS + AE G EP + + RL+V + G ++G+GG + + A I++ P D
Sbjct: 104 KLHSELHAEDGNEVEPRRRI--RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDN 161
Query: 175 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
S D +V + G + A+ I ++L E
Sbjct: 162 TFYGLS--DRLVTLSGTFEEQMRAIDLILAKLTE 193
Score = 80 (33.2 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 328 ASSGFTPRN-RPVESG----NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 382
A++G+ N P SG NH STT+ + + ++ V G N+ I Q++GA
Sbjct: 228 ATAGYNSVNYAPNGSGGKYQNHKEE-ASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGA 286
Query: 383 NVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLI 414
+ ++D G T+ V ++G ++ A+++I
Sbjct: 287 RIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMI 321
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 179 (68.1 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 55/174 (31%), Positives = 95/174 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVISARENS 105
E+EVV+ L VG+LIGK G ++ + GASIKIA PD ER+V+I+ +
Sbjct: 271 EQEVVY-LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPESPDEPERMVIITGPPEA 329
Query: 106 EMRHSPAQDAVMRVHSRIAEIGFEPGQAVV---ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F + V A + V S G ++G+GG V+E++
Sbjct: 330 QFK---AQG---RIYGKLKEENFFTAKEEVKLEAHIKVPSTAAGRVIGKGGKTVNELQNL 383
Query: 163 TGASIRVFPKDQAPRCGSPHDEI-VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
T A + + P+DQ P +D++ V++IG++ + Q A ++RE + +K+
Sbjct: 384 TSAEV-IVPRDQTP---DENDDVFVKIIGHFFASQTA----QRKIREIVQQVKQ 429
Score = 84 (34.6 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVI 99
EEV K+L H VG LIGK G ++ + +TG I I+ D+ ++ER + +
Sbjct: 139 EEVPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISALQDLTVYNQERTISV 193
Score = 72 (30.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G+ V L + + +G L+G+ G + E+ GASI++ AP + +V + G
Sbjct: 270 GEQEVVYLFIPTPAVGALIGKKGQHIKELAHFAGASIKI----AAPESPDEPERMVIITG 325
Query: 191 NYHSVQDALFHITSRLRETIF 211
+ A I +L+E F
Sbjct: 326 PPEAQFKAQGRIYGKLKEENF 346
Score = 50 (22.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/66 (21%), Positives = 28/66 (42%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGV-VMVSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A V+V D P + V V + G + AQ
Sbjct: 359 IKVPSTAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENDDVFVKIIGHFFASQTAQR 418
Query: 413 LIHAFI 418
I +
Sbjct: 419 KIREIV 424
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 108 (43.1 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 412 SLI 414
L+
Sbjct: 449 YLL 451
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 439
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
Score = 80 (33.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 92
Score = 77 (32.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 63/255 (24%), Positives = 96/255 (37%)
Query: 78 ETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMRVHSRIAEIGFEPGQAVVA 136
ET I + I+P EE + + S S++ S A + + H + ++ E
Sbjct: 95 ETIGEI-LKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCE------L 147
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 194
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 195 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 253
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 254 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 312
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 313 WTPQGVGGGDPRGFD 327
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 71 (30.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI-ADILPDSEERIVVISAR 102
+LL H G +IG G+ ++ + T +IK+ + P S +R+V+I +
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGK 198
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 104 NSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
N E PA+D M + V R+L+ S+ G ++G+GG + +R
Sbjct: 16 NGEFGKRPAED--MEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDY 72
Query: 164 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
AS+ V P P + I+ + + ++ + L I L E
Sbjct: 73 NASVSV-PDSSGP------ERILSISADIETIGEILKKIIPTLEE 110
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 108 (43.1 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 412 SLI 414
L+
Sbjct: 449 YLL 451
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 439
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
Score = 80 (33.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 92
Score = 77 (32.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 63/255 (24%), Positives = 96/255 (37%)
Query: 78 ETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMRVHSRIAEIGFEPGQAVVA 136
ET I + I+P EE + + S S++ S A + + H + ++ E
Sbjct: 95 ETIGEI-LKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCE------L 147
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 194
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 195 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 253
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 254 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 312
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 313 WTPQGVGGGDPRGFD 327
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 71 (30.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI-ADILPDSEERIVVISAR 102
+LL H G +IG G+ ++ + T +IK+ + P S +R+V+I +
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGK 198
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 104 NSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
N E PA+D M + V R+L+ S+ G ++G+GG + +R
Sbjct: 16 NGEFGKRPAED--MEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDY 72
Query: 164 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
AS+ V P P + I+ + + ++ + L I L E
Sbjct: 73 NASVSV-PDSSGP------ERILSISADIETIGEILKKIIPTLEE 110
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 108 (43.1 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 412 SLI 414
L+
Sbjct: 449 YLL 451
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 439
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
Score = 80 (33.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 92
Score = 77 (32.2 bits), Expect = 9.1e-11, Sum P(3) = 9.1e-11
Identities = 63/255 (24%), Positives = 96/255 (37%)
Query: 78 ETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMRVHSRIAEIGFEPGQAVVA 136
ET I + I+P EE + + S S++ S A + + H + ++ E
Sbjct: 95 ETIGEI-LKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCE------L 147
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 194
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 195 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 253
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 254 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 312
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 313 WTPQGVGGGDPRGFD 327
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 71 (30.1 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI-ADILPDSEERIVVISAR 102
+LL H G +IG G+ ++ + T +IK+ + P S +R+V+I +
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGK 198
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 104 NSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
N E PA+D M + V R+L+ S+ G ++G+GG + +R
Sbjct: 16 NGEFGKRPAED--MEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDY 72
Query: 164 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
AS+ V P P + I+ + + ++ + L I L E
Sbjct: 73 NASVSV-PDSSGP------ERILSISADIETIGEILKKIIPTLEE 110
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 108 (43.1 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 412 SLI 414
L+
Sbjct: 449 YLL 451
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 439
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
Score = 80 (33.2 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 92
Score = 77 (32.2 bits), Expect = 9.2e-11, Sum P(3) = 9.2e-11
Identities = 61/253 (24%), Positives = 94/253 (37%)
Query: 78 ETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMRVHSRIAEIGFEPGQAVVA 136
ET I + I+P EE + + S S++ S A + + H + ++ E
Sbjct: 95 ETIGEI-LKKIIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCE------L 147
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
RLL+H G ++G G + E+R T +I++F + C D +V + G V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 203
Query: 197 DALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPF 255
+ + I + E+ P+K R P + + Y G G F
Sbjct: 204 ECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGF 261
Query: 256 HSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRSWT 314
M G G +P M P P P P G R G G + R P P
Sbjct: 262 DRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPPPP 314
Query: 315 PQGVGGGDPRGFD 327
P+G GD +D
Sbjct: 315 PRG---GDLMAYD 324
Score = 72 (30.4 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI-ADILPDSEERIVVISAR 102
+LL H G +IG G+ ++ + T +IK+ + P S +R+V+I +
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDRVVLIGGK 198
Score = 69 (29.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 104 NSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
N E PA+D M + V R+L+ S+ G ++G+GG + +R
Sbjct: 16 NGEFGKRPAED--MEEEQAFKR-SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTDY 72
Query: 164 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
AS+ V P P + I+ + + ++ + L I L E
Sbjct: 73 NASVSV-PDSSGP------ERILSISADIETIGEILKKIIPTLEE 110
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 116 (45.9 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 47/183 (25%), Positives = 84/183 (45%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA ++E
Sbjct: 37 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA--DTE 92
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + E+R T
Sbjct: 93 T----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 148
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V + G V + + I + E+ P+K R P +
Sbjct: 149 TTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILDLISES--PIKGRAQPYDP 200
Query: 222 HSY 224
+ Y
Sbjct: 201 NFY 203
Score = 108 (43.1 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 412 SLI 414
L+
Sbjct: 413 YLL 415
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 154 (59.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 51/184 (27%), Positives = 85/184 (46%)
Query: 39 GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEER 95
GGR +E E K+L GS+IGKGG + Q ETGA+IK++ D P + ER
Sbjct: 49 GGRG---WEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 105
Query: 96 IVVISAR-ENSEMRHSPAQDAVMRVHSRIA--EI--------GFEPGQAVVARLLVHSQQ 144
+ ++ E HS + V + + E+ P +A A+L+V +
Sbjct: 106 VCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNST 165
Query: 145 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 204
G ++G+GG V + +GA +++ Q P + + +V V G V A+ I
Sbjct: 166 AGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQ 222
Query: 205 RLRE 208
+++E
Sbjct: 223 KVQE 226
Score = 69 (29.3 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/73 (23%), Positives = 35/73 (47%)
Query: 345 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVS 401
AA +E+ +P+ + + G+ L ++++GA + ++ PG V ++
Sbjct: 425 AAESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTIT 484
Query: 402 GTSDQMRAAQSLI 414
G+ +AAQ LI
Sbjct: 485 GSPAATQAAQYLI 497
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 47/183 (25%), Positives = 84/183 (45%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA ++E
Sbjct: 37 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA--DTE 92
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + E+R T
Sbjct: 93 T----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 148
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V + G V + + I + E+ P+K R P +
Sbjct: 149 TTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILDLIFES--PIKGRAQPYDP 200
Query: 222 HSY 224
+ Y
Sbjct: 201 NFY 203
Score = 108 (43.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 412 SLI 414
L+
Sbjct: 413 YLL 415
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 114 (45.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 47/183 (25%), Positives = 84/183 (45%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA ++E
Sbjct: 37 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA--DTE 92
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + E+R T
Sbjct: 93 T----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 148
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V + G V + + I + E+ P+K R P +
Sbjct: 149 TTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILDLIFES--PIKGRAQPYDP 200
Query: 222 HSY 224
+ Y
Sbjct: 201 NFY 203
Score = 108 (43.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 412 SLI 414
L+
Sbjct: 413 YLL 415
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 113 (44.8 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 46/183 (25%), Positives = 82/183 (44%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA +
Sbjct: 37 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISADIET- 93
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + E+R T
Sbjct: 94 -----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 148
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V + G V + + I + E+ P+K R P +
Sbjct: 149 TTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILDLISES--PIKGRAQPYDP 200
Query: 222 HSY 224
+ Y
Sbjct: 201 NFY 203
Score = 108 (43.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 352 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 411
Query: 412 SLI 414
L+
Sbjct: 412 YLL 414
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 109 (43.4 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 206 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 264
Query: 385 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 265 KIANPVEGSTDRQVTITGSAASISLAQYLIN 295
Score = 107 (42.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 25 HSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIK 84
H + SS + T R V +L+ + GSLIGKGG ++ + TGA ++
Sbjct: 21 HGKDISSSMTNSTAASR------PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQ 74
Query: 85 IA-DILPDSEERIVVIS 100
+A D+LP+S ER + I+
Sbjct: 75 VAGDMLPNSTERAITIA 91
Score = 87 (35.7 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 193
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 95
Query: 194 SVQDALFHITSRLRETI 210
S+ + + I + ET+
Sbjct: 96 SIIECVKQICVVMLETL 112
Score = 81 (33.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 229 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 283
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 284 AASISLAQYLINVRL 298
>UNIPROTKB|F1NWN2 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 EMBL:AADN02024285
EMBL:AADN02024286 IPI:IPI00599184 Ensembl:ENSGALT00000010541
Uniprot:F1NWN2
Length = 551
Score = 175 (66.7 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 55/173 (31%), Positives = 92/173 (53%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL-PDSEERIVVISARENS 105
E+EVV L VG++IGK G ++ GASIKIA PD+ ER+V+I+ +
Sbjct: 377 EQEVV-NLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEA 435
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R+ ++ E F P + V A + V S G ++G+GG V+E++
Sbjct: 436 QFK---AQG---RIFGKLKEENFFNPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNL 489
Query: 163 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKR 215
T A + + P+DQ P + IV++IG++ + Q A ++RE + +K+
Sbjct: 490 TSAEV-IVPRDQTP--DENEEVIVKIIGHFFASQTA----QRKIREIVQQVKQ 535
Score = 106 (42.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 44/200 (22%), Positives = 91/200 (45%)
Query: 11 AAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGS 70
++ P QR G+ SR S PG G ++ + + ++L VG++IGK G
Sbjct: 134 SSPPPPQRSRRGGHASREQGSSPG-----GSSQP-KQLDFPLRMLVPTQFVGAIIGKEGL 187
Query: 71 IVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128
++ +T + + I + +E+ I + + E S A ++ + + A+
Sbjct: 188 TIKNLTKQTQSKVDIHRKENAGAAEKPITIHATPEGC----SEACRMILDIMQKEAD-ET 242
Query: 129 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 188
+ + + ++L H+ +G L+G+ G + ++ + TG I + P Q +P + + V
Sbjct: 243 KSAEEIPLKILAHNSLVGRLIGKEGRNLKKIEQDTGTKITISPL-QDLTIYNP-ERTITV 300
Query: 189 IGNYHSVQDALFHITSRLRE 208
G+ + +A I +LRE
Sbjct: 301 KGSTEACSNAEVEIMKKLRE 320
Score = 66 (28.3 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQ 411
+ + IP + + G+ ++ + + +GA++ + + P ATE +V+++G + AQ
Sbjct: 381 VNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGPDATERMVIITGPPEAQFKAQ 440
Query: 412 SLI 414
I
Sbjct: 441 GRI 443
Score = 54 (24.1 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A V+V D P E V++ + G + AQ
Sbjct: 465 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVKIIGHFFASQTAQR 524
Query: 413 LIHAFI 418
I +
Sbjct: 525 KIREIV 530
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 147 (56.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 55/203 (27%), Positives = 90/203 (44%)
Query: 21 APGYHSRGYSSGPGHETVGGRNRMFYEE-EVVFKLLCHLDKVGSLIGKGGSIVRTFQNET 79
AP R + P E V + EE E K+L GS+IGKGG + Q ET
Sbjct: 5 APDSRKRPLETPP--EVVCTKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKET 62
Query: 80 GASIKIA---DILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIA--EI------- 126
GA+IK++ D P + ER+ ++ E HS + V + + E+
Sbjct: 63 GATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQ 122
Query: 127 -GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
P +A A+L+V + G ++G+GG V + +GA +++ Q P + + +
Sbjct: 123 TTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERV 179
Query: 186 VQVIGNYHSVQDALFHITSRLRE 208
V V G V A+ I +++E
Sbjct: 180 VTVSGEPEQVHKAVSAIVQKVQE 202
Score = 71 (30.1 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 317 GVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
G GGG A++ + + AA +E+ +P+ + + G+ L
Sbjct: 373 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 432
Query: 377 RQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLI 414
++++GA + ++ PG V ++G+ +AAQ LI
Sbjct: 433 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 473
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 146 (56.5 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 48/176 (27%), Positives = 81/176 (46%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR- 102
E E K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ ++
Sbjct: 2 EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA 61
Query: 103 ENSEMRHSPAQDAVMRVHSRIA--EI--------GFEPGQAVVARLLVHSQQIGCLLGRG 152
E HS + V + + E+ P +A A+L+V + G ++G+G
Sbjct: 62 EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKG 121
Query: 153 GHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G V + +GA +++ Q P + + +V V G V A+ I +++E
Sbjct: 122 GATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQE 174
Score = 71 (30.1 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 317 GVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
G GGG A++ + + AA +E+ +P+ + + G+ L
Sbjct: 345 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 404
Query: 377 RQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLI 414
++++GA + ++ PG V ++G+ +AAQ LI
Sbjct: 405 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 445
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 122 (48.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 102 (41.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 289 VTITGSPVSIALAQYLITACL-ET 311
Score = 95 (38.5 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 329 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 387
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 220 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 278
Query: 388 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
+ GA E V ++G+ + AQ LI A
Sbjct: 279 NQAEGAGERHVTITGSPVSIALAQYLITA 307
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 122 (48.0 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 102 (41.0 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 235 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 289
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 290 VTITGSPVSIALAQYLITACL-ET 312
Score = 95 (38.5 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 339 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 398
V +G TS+ E ++P + V G S +S IRQ+SGA++ + + GA E V
Sbjct: 232 VPAGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 290
Query: 399 MVSGTSDQMRAAQSLIHA 416
++G+ + AQ LI A
Sbjct: 291 TITGSPVSIALAQYLITA 308
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 146 (56.5 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 48/176 (27%), Positives = 81/176 (46%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR- 102
E E K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ ++
Sbjct: 40 EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTA 99
Query: 103 ENSEMRHSPAQDAVMRVHSRIA--EI--------GFEPGQAVVARLLVHSQQIGCLLGRG 152
E HS + V + + E+ P +A A+L+V + G ++G+G
Sbjct: 100 EALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKG 159
Query: 153 GHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G V + +GA +++ Q P + + +V V G V A+ I +++E
Sbjct: 160 GATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQVHKAVSAIVQKVQE 212
Score = 71 (30.1 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
Identities = 22/101 (21%), Positives = 44/101 (43%)
Query: 317 GVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
G GGG A++ + + AA +E+ +P+ + + G+ L
Sbjct: 383 GAGGGGGPLVAAAAAAGAAGGFLTAEKLAAESAKELVEIAVPENLVGAILGKGGKTLVEY 442
Query: 377 RQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLI 414
++++GA + ++ PG V ++G+ +AAQ LI
Sbjct: 443 QELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLI 483
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 122 (48.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 96 (38.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 289 VTITGSPVSIALAQYLITACL-ET 311
Score = 94 (38.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 339 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 398
V G + TS+ E ++P + V G S +S IRQ+SGA++ + + GA E V
Sbjct: 231 VVPGMDPSTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 399 MVSGTSDQMRAAQSLIHA 416
++G+ + AQ LI A
Sbjct: 290 TITGSPVSIALAQYLITA 307
Score = 87 (35.7 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 410
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 411 QSLIHAFIL 419
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 74 (31.1 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 125 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 184
E G E + R+L+H +++G ++G+ G V +R + A I + GS +
Sbjct: 9 EEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPER 61
Query: 185 IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 223
I + G+ +V A+ I +L E + P NG S
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGS 96
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 109 (43.4 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 221 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 279
Query: 385 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 280 KIANPVEGSTDRQVTITGSAASISLAQYLIN 310
Score = 105 (42.0 bits), Expect = 5.4e-10, Sum P(2) = 5.4e-10
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 110
Score = 83 (34.3 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 94
Score = 81 (33.6 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 24/75 (32%), Positives = 39/75 (52%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+
Sbjct: 244 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGS 298
Query: 192 YHSVQDALFHITSRL 206
S+ A + I RL
Sbjct: 299 AASISLAQYLINVRL 313
Score = 62 (26.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMR 160
RLL+H +++G ++G+ G V +MR
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMR 40
Score = 58 (25.5 bits), Expect = 5.4e-10, Sum P(3) = 5.4e-10
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNE 78
+ +LL H +VGS+IGK G V+ + E
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREE 42
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 173 (66.0 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 67/224 (29%), Positives = 108/224 (48%)
Query: 9 PPAAEPFHQRGYAPGYHSRGYSSGPGHET-VGG-----------RNRMFYEEEVVFKLLC 56
PPAA P RG P GY+ GH + +GG E+EVV+ L
Sbjct: 386 PPAAGP---RGIPP-VPPTGYNPFLGHSSQLGGLYGVPPASGISHQHTAPEQEVVY-LFI 440
Query: 57 HLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENSEMRHSPAQDA 115
VG++IGK G ++ GASIKIA PD +R+V+I+ ++ + AQ
Sbjct: 441 PTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESPDVTQRMVIITGPPEAQFK---AQG- 496
Query: 116 VMRVHSRIAEIGFEPGQAVV---ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 172
R+ ++ E F + V + V S G ++G+GG V+E++ T A + + P+
Sbjct: 497 --RIFGKLKEENFFTAKEEVKLETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEV-IVPR 553
Query: 173 DQAPRCGSPHDEI-VQVIGNYHSVQDALFHITSRLRETIFPMKR 215
DQ P +DE+ V++ G++ + Q A ++RE I +K+
Sbjct: 554 DQTP---DENDEVFVKISGHFFASQTA----QRKIREIIQQVKQ 590
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 122 (48.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 102 (41.0 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 289 VTITGSPVSIALAQYLITACL-ET 311
Score = 93 (37.8 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 413
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 414 IHA 416
I A
Sbjct: 305 ITA 307
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 122 (48.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 96 (38.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 289 VTITGSPVSIALAQYLITACL-ET 311
Score = 93 (37.8 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 413
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 414 IHA 416
I A
Sbjct: 305 ITA 307
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 122 (48.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
Score = 104 (41.7 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGK G+ ++ + TGA +++A D+LP+S ER V +S
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVS 153
Score = 96 (38.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 289 VTITGSPVSIALAQYLITACL-ET 311
Score = 93 (37.8 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 413
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 414 IHA 416
I A
Sbjct: 305 ITA 307
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 133 (51.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 36/122 (29%), Positives = 60/122 (49%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+ A I I++ ERI+ I+ R
Sbjct: 27 LTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISE--GSCPERIITITGATECVFRA 84
Query: 110 SPAQDAVMR--VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ + + +A V RL++ + Q G L+G+GG + E+R TGA +
Sbjct: 85 FTMITIKLEEDLAALVANGTVTSKPPVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQV 144
Query: 168 RV 169
+V
Sbjct: 145 QV 146
Score = 119 (46.9 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
Identities = 32/96 (33%), Positives = 54/96 (56%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVISARENSEMR 108
V +L+ + GSLIGKGGS ++ + +TGA +++A D+LP+S ER V IS +++ ++
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQDAIIQ 170
Query: 109 HSPAQ-DAVMRVHSRIAEIGFEPGQAVVARLLVHSQ 143
++ + A I + P A A LL +Q
Sbjct: 171 CVKLICTVILESPPKGATIPYRPSPAPGAVLLAGNQ 206
Score = 79 (32.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 413
E++IP + + G + ++ IRQ+SGA + + ++ V ++G+ + AQ L
Sbjct: 283 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYL 342
Query: 414 I 414
I
Sbjct: 343 I 343
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 119 (46.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 45/181 (24%), Positives = 80/181 (44%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + AS+ + D ERI+ ISA +
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSVPD--SSGPERILSISADIET- 96
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + E+R T
Sbjct: 97 -----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQ 151
Query: 165 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNGHS 223
+I++F + C P D +V + G V + + I + E+ P+K R P + +
Sbjct: 152 TTIKLFQEC----CPHPTDRVVLIGGKPDRVVECIKIILDLISES--PIKGRAQPYDPNF 205
Query: 224 Y 224
Y
Sbjct: 206 Y 206
Score = 93 (37.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V I + + G+ + +R SGA++ +++P G+ + V+ ++GT DQ++ A
Sbjct: 365 TTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAP 424
Query: 412 SLI 414
L+
Sbjct: 425 YLL 427
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 105 (42.0 bits), Expect = 0.00065, P = 0.00065
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 149
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 145 (56.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 124 (48.7 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 39/163 (23%), Positives = 80/163 (49%)
Query: 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAR-ENSEMRHS 110
+++L + G LIG G ++ + +NET I+ ++P S ERI+ +S + ++ S
Sbjct: 72 YRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISRLIPGSHERILTVSGKLDDCAKALS 131
Query: 111 PAQDAVMRVHSR------IAEIGFEPG--QAVVARLLVHSQQIGCLLGRGGHIVSEMRRA 162
A++ + + ++ P + + RLL+ + Q+G L+G G + +++
Sbjct: 132 YFAQALINANIESYNYFPLKQLSSTPNTEETTILRLLIPNSQMGTLIGSKGARIQQLQNN 191
Query: 163 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSR 205
S+ + K P GS ++ +V++ G + D+L I SR
Sbjct: 192 FNISM-IASKSFLP--GS-NERLVELQGTVDDLYDSL-RIISR 229
Score = 84 (34.6 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 336 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 395
N + H + TT + P + + G+ S + +R++SGA + +++ G E
Sbjct: 272 NNNNNNNTHGSGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENE 331
Query: 396 GVVMVSGTSDQMRAAQSLIH 415
V ++G+S + A+ +I+
Sbjct: 332 RVFTITGSSHAVDKAKQMIY 351
Score = 77 (32.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS-IKIADILPDSEERIV 97
EE + +LL ++G+LIG G+ ++ QN S I LP S ER+V
Sbjct: 160 EETTILRLLIPNSQMGTLIGSKGARIQQLQNNFNISMIASKSFLPGSNERLV 211
>ZFIN|ZDB-GENE-060929-1258 [details] [associations]
symbol:igf2bp1 "insulin-like growth factor 2 mRNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322
SMART:SM00360 ZFIN:ZDB-GENE-060929-1258 GO:GO:0005634 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0070937
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T EMBL:BC124196 IPI:IPI00800578
RefSeq:NP_001070027.1 UniGene:Dr.81351 ProteinModelPortal:Q08CK7
SMR:Q08CK7 PRIDE:Q08CK7 GeneID:558182 KEGG:dre:558182
InParanoid:Q08CK7 NextBio:20882359 Uniprot:Q08CK7
Length = 598
Score = 167 (63.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 53/180 (29%), Positives = 95/180 (52%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E V + VG+LIGK G ++ GASIKIA PDS+ R+V+++ +
Sbjct: 406 EQETVHVYI-PAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPEA 464
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 465 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIKVAAAAAGRVIGKGGKTVNELQNL 518
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 221
T A + V P++Q P HD+ IV++IG++++ Q A ++R+ + +K+ G
Sbjct: 519 TAAEV-VVPREQTP---DEHDQVIVKIIGHFYASQLA----QRKIRDILTQVKQQQKGGG 570
Score = 103 (41.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 38/157 (24%), Positives = 70/157 (44%)
Query: 19 GYAPGYHSRGYSS--GPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQ 76
G PGY RG S PG G ++ +LL VG++IGK G+ +R
Sbjct: 170 GRRPGYGPRGTSRQMSPG----SGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNIT 225
Query: 77 NETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAV 134
+T + I + + +E+ I + S E S A ++ + ++ A+ + V
Sbjct: 226 KQTQSKIDVHRKENAGAAEKPISIHSTPEGC----SAACRMILEIMNQEAK-DTKTADEV 280
Query: 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 171
++L H+ +G L+G+ G + ++ + T I + P
Sbjct: 281 PLKVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISP 317
Score = 59 (25.8 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAA 410
T+ V IP + + G+ ++ + + +GA++ + + P + +V+V+G + A
Sbjct: 409 TVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEAPDSKMRMVIVTGPPEAQFKA 468
Query: 411 QSLIH 415
Q I+
Sbjct: 469 QGRIY 473
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 164 (62.8 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 47/153 (30%), Positives = 81/153 (52%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQ-DAVMRV 119
VG++IG GS +R+ + AS+KIA + D+++ + + R+ + + Q A +
Sbjct: 329 VGAIIGTRGSHIRSIMRFSNASLKIAPL--DADKPLDQQTERKVTIVGTPEGQWKAQYMI 386
Query: 120 HSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ AP
Sbjct: 387 FEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAP 446
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209
G + V +IG ++SVQ A I + + T
Sbjct: 447 PSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 479
Score = 78 (32.5 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVI 99
E+ K+L H + +G +IGK G+ ++ +T I ++ DI + ERI+ +
Sbjct: 179 EICLKILAHNNLIGRIIGKSGNTIKRIMQDTDTKITVSSINDINSFNLERIITV 232
Score = 74 (31.1 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 138 LLVHSQQIGCLLG-RGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
L + + +G ++G RG HI S MR + AS+++ P D + V ++G
Sbjct: 322 LYIPNNAVGAIIGTRGSHIRSIMR-FSNASLKIAPLDADKPLDQQTERKVTIVGTPEGQW 380
Query: 197 DALFHITSRLRETIF 211
A + I ++RE F
Sbjct: 381 KAQYMIFEKMREEGF 395
Score = 61 (26.5 bits), Expect = 7.2e-05, Sum P(3) = 7.2e-05
Identities = 15/73 (20%), Positives = 37/73 (50%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND-----PKPGATEGVVMVSGTSDQ 406
T+E+++ + + G+ N+ +++++G+ + + + P G E V + G
Sbjct: 405 TVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIGLFYS 464
Query: 407 MRAAQSLIHAFIL 419
+++AQ I A +L
Sbjct: 465 VQSAQRRIRAMML 477
>FB|FBgn0261552 [details] [associations]
symbol:ps "pasilla" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEP] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0000398 HSSP:Q9UNW9 FlyBase:FBgn0261552 EMBL:BT001623
ProteinModelPortal:Q8IGS7 PRIDE:Q8IGS7 InParanoid:Q8IGS7
ArrayExpress:Q8IGS7 Bgee:Q8IGS7 Uniprot:Q8IGS7
Length = 605
Score = 131 (51.2 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 40/173 (23%), Positives = 84/173 (48%)
Query: 45 FYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISA 101
F E K+L G++IGKGG + + Q +TGA +K++ D P + ER+ +I+
Sbjct: 94 FCETTYHMKILVPAVASGAIIGKGGETIASLQKDTGARVKMSKSHDFYPGTTERVCLITG 153
Query: 102 RENSEMRHSP-AQDAVMR---VHSRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHI 155
+ M D + + ++I + + Q ++LV + G ++G+GG
Sbjct: 154 STEAIMVVMEFIMDKIREKPDLTNKIVDTDSKQTQERDKQVKILVPNSTAGMIIGKGGAF 213
Query: 156 VSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +++ +G+ +++ Q P S + + +IG+ + ++A I S++ E
Sbjct: 214 IKQIKEESGSYVQI---SQKPTDVSLQERCITIIGDKENNKNACKMILSKIVE 263
Score = 78 (32.5 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP---KPGATEGVVMVSGTSDQMRAAQ 411
V +P++ + + G + +L I+ +SGANV ++ PG +V ++G + AQ
Sbjct: 521 VEVPEVIIGAILGPSGRSLVEIQHVSGANVQISKKGIFAPGTRNRIVTITGQPSAIAKAQ 580
Query: 412 SLI 414
LI
Sbjct: 581 YLI 583
Score = 38 (18.4 bits), Expect = 9.7e-09, Sum P(3) = 9.7e-09
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 330 SGFTPRNRPVESGNHAAILTSTTIEVVIPQL 360
S P PV N++ LT+TT QL
Sbjct: 471 SATAPAATPVSLNNNSFGLTATTGTATTAQL 501
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 108 (43.1 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 412 SLI 414
L+
Sbjct: 425 YLL 427
Score = 98 (39.6 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 44/183 (24%), Positives = 80/183 (43%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE 106
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA +
Sbjct: 40 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISADIET- 96
Query: 107 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ + ++ + E G RLL+H G ++G G + + T
Sbjct: 97 -----IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQ 151
Query: 165 ASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNG 221
+I++F + C PH D +V + G V + + I + E+ P+K R P +
Sbjct: 152 TTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILDLISES--PIKGRAQPYDP 203
Query: 222 HSY 224
+ Y
Sbjct: 204 NFY 206
>UNIPROTKB|E1BKJ7 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010610 "regulation of mRNA stability involved in response to
stress" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:DAAA02049054 EMBL:DAAA02049055 IPI:IPI00699469
RefSeq:NP_001179383.1 UniGene:Bt.27949 Ensembl:ENSBTAT00000015586
GeneID:516853 KEGG:bta:516853 NextBio:20872317 Uniprot:E1BKJ7
Length = 577
Score = 162 (62.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 53/179 (29%), Positives = 96/179 (53%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+V+I+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 220
T A + V P+DQ P +D+ IV++IG++++ Q A I L + + + + G +N
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQ-VKQLHQKGQSN 570
>UNIPROTKB|E2RTC5 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability
complex" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0045182 "translation regulator activity"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0010610 "regulation of mRNA stability involved in
response to stress" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027 GO:GO:0003730
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 CTD:10642
GeneTree:ENSGT00530000063171 OMA:EQETVHV GO:GO:0010610
EMBL:AAEX03006519 EMBL:AAEX03006520 RefSeq:XP_548184.2
ProteinModelPortal:E2RTC5 Ensembl:ENSCAFT00000026763 GeneID:491064
KEGG:cfa:491064 Uniprot:E2RTC5
Length = 577
Score = 162 (62.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 53/179 (29%), Positives = 96/179 (53%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+V+I+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 220
T A + V P+DQ P +D+ IV++IG++++ Q A I L + + + + G +N
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQ-VKQLHQKGQSN 570
>UNIPROTKB|I3L9X2 [details] [associations]
symbol:IGF2BP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 CTD:10642 GeneTree:ENSGT00530000063171 OMA:EQETVHV
EMBL:FP312864 RefSeq:XP_003358128.1 Ensembl:ENSSSCT00000022825
GeneID:100620940 KEGG:ssc:100620940 Uniprot:I3L9X2
Length = 577
Score = 162 (62.1 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 53/179 (29%), Positives = 96/179 (53%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+V+I+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 220
T A + V P+DQ P +D+ IV++IG++++ Q A I L + + + + G +N
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDILAQ-VKQLHQKGQSN 570
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+VVI+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDA 198
T A + V P+DQ P +D+ IV++IG++++ Q A
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/157 (31%), Positives = 87/157 (55%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+VVI+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDA 198
T A + V P+DQ P +D+ IV++IG++++ Q A
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 404 ETETVHLFIPALS-VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ +I E F P + V A + V S G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQDA 198
+ A + V P+DQ P +D++V ++ G++++ Q A
Sbjct: 517 SSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVA 549
Score = 118 (46.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 37/164 (22%), Positives = 79/164 (48%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI--ADILPDSEERIVVISARENSE 106
++ +LL VG++IGK G+ +R +T + I + + +E+ I ++S E +
Sbjct: 195 DLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGT- 253
Query: 107 MRHSPAQDAVMRV-HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
S A +++ + H +I F + + ++L H+ +G L+G+ G + ++ + T
Sbjct: 254 ---SAACKSILEIMHKEAQDIKFT--EEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDT 308
Query: 166 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209
I + P + +P + + V GN + A I ++RE+
Sbjct: 309 KITISPLQELTLY-NP-ERTITVKGNVETCAKAEEEIMKKIRES 350
Score = 76 (31.8 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 128 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
FE + L + + +G ++G+ G + ++ R GASI++ P + AP
Sbjct: 400 FEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAE-AP 447
Score = 74 (31.1 bits), Expect = 0.00028, Sum P(3) = 0.00028
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 46 YEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI 88
+ EE+ K+L H + VG LIGK G ++ + +T I I+ +
Sbjct: 273 FTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPL 315
Score = 67 (28.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAA 410
T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G + A
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKA 466
Query: 411 QSLIHAFI 418
Q I+ I
Sbjct: 467 QGRIYGKI 474
Score = 57 (25.1 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQSLI 414
+P V G+ ++ ++ +S A VVV D P + VV+ ++G + AQ I
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKI 553
Query: 415 HAFI 418
+
Sbjct: 554 QEIL 557
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 404 ETETVHLFIPALS-VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ +I E F P + V A + V S G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQDA 198
+ A + V P+DQ P +D++V ++ G++++ Q A
Sbjct: 517 SSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVA 549
Score = 124 (48.7 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 49/212 (23%), Positives = 97/212 (45%)
Query: 1 MVVQGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDK 60
M Q NP + +P +RG+ SR PG +V + ++ +LL
Sbjct: 158 MAAQQNP---SQQPRGRRGFGQRGSSR--QGSPG--SVSKQKPC----DLPLRLLVPTQF 206
Query: 61 VGSLIGKGGSIVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMR 118
VG++IGK G+ +R +T + I + + +E+ I ++S E + S A +++
Sbjct: 207 VGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGT----SAACKSILE 262
Query: 119 V-HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 177
+ H +I F + + ++L H+ +G L+G+ G + ++ + T I + P +
Sbjct: 263 IMHKEAQDIKFT--EEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL 320
Query: 178 CGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209
+P + + V GN + A I ++RE+
Sbjct: 321 Y-NP-ERTITVKGNVETCAKAEEEIMKKIRES 350
Score = 67 (28.6 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAA 410
T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G + A
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKA 466
Query: 411 QSLIHAFI 418
Q I+ I
Sbjct: 467 QGRIYGKI 474
Score = 57 (25.1 bits), Expect = 5.9e-06, Sum P(2) = 5.9e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQSLI 414
+P V G+ ++ ++ +S A VVV D P + VV+ ++G + AQ I
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKI 553
Query: 415 HAFI 418
+
Sbjct: 554 QEIL 557
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 161 (61.7 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 405 ETETVHLFIPALS-VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEA 463
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ +I E F P + V A + V S G ++G+GG V+E++
Sbjct: 464 QFK---AQG---RIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNL 517
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQDA 198
+ A + V P+DQ P +D++V ++ G++++ Q A
Sbjct: 518 SSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVA 550
Score = 123 (48.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 46/203 (22%), Positives = 94/203 (46%)
Query: 10 PAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGG 69
P+ +P +RG+ SR PG +V + ++ +LL VG++IGK G
Sbjct: 164 PSQQPRGRRGFGQRGSSR--QGSPG--SVSKQKPC----DLPLRLLVPTQFVGAIIGKEG 215
Query: 70 SIVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRV-HSRIAEI 126
+ +R +T + I + + +E+ I ++S E + S A +++ + H +I
Sbjct: 216 ATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGT----SAACKSILEIMHKEAQDI 271
Query: 127 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
F + + ++L H+ +G L+G+ G + ++ + T I + P + +P + +
Sbjct: 272 KFT--EEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLY-NP-ERTI 327
Query: 187 QVIGNYHSVQDALFHITSRLRET 209
V GN + A I ++RE+
Sbjct: 328 TVKGNVETCAKAEEEIMKKIRES 350
Score = 67 (28.6 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAA 410
T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G + A
Sbjct: 408 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKA 467
Query: 411 QSLIHAFI 418
Q I+ I
Sbjct: 468 QGRIYGKI 475
Score = 57 (25.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQSLI 414
+P V G+ ++ ++ +S A VVV D P + VV+ ++G + AQ I
Sbjct: 495 VPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKI 554
Query: 415 HAFI 418
+
Sbjct: 555 QEIL 558
>UNIPROTKB|Q9NZI8 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0043197 "dendritic
spine" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070937 "CRD-mediated mRNA stability complex" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IMP]
[GO:0070934 "CRD-mediated mRNA stabilization" evidence=IDA]
[GO:0005829 "cytosol" evidence=TAS] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0045182 "translation
regulator activity" evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IDA] [GO:0042035 "regulation of cytokine biosynthetic
process" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182 GO:GO:0030027
GO:GO:0003723 GO:GO:0048027 GO:GO:0003730 GO:GO:0042035
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 EMBL:AF198254 EMBL:DQ227344
EMBL:AC091133 EMBL:AC105030 IPI:IPI00008557 IPI:IPI00930694
RefSeq:NP_001153895.1 RefSeq:NP_006537.3 UniGene:Hs.144936 PDB:3KRM
PDBsum:3KRM ProteinModelPortal:Q9NZI8 SMR:Q9NZI8 DIP:DIP-38139N
IntAct:Q9NZI8 STRING:Q9NZI8 PhosphoSite:Q9NZI8 DMDM:296434536
PaxDb:Q9NZI8 PeptideAtlas:Q9NZI8 PRIDE:Q9NZI8 DNASU:10642
Ensembl:ENST00000290341 Ensembl:ENST00000431824 GeneID:10642
KEGG:hsa:10642 UCSC:uc002iom.3 GeneCards:GC17P047074
H-InvDB:HIX0013955 HGNC:HGNC:28866 HPA:HPA021367 MIM:608288
neXtProt:NX_Q9NZI8 PharmGKB:PA143485501 InParanoid:Q9NZI8
PhylomeDB:Q9NZI8 EvolutionaryTrace:Q9NZI8 GenomeRNAi:10642
NextBio:40447 ArrayExpress:Q9NZI8 Bgee:Q9NZI8 CleanEx:HS_IGF2BP1
CleanEx:HS_ZBP1 Genevestigator:Q9NZI8 GO:GO:0006403 Uniprot:Q9NZI8
Length = 577
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 49/157 (31%), Positives = 87/157 (55%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+V+I+ +
Sbjct: 404 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDA 198
T A + V P+DQ P +D+ IV++IG++++ Q A
Sbjct: 517 TAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMA 549
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 50/157 (31%), Positives = 86/157 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 404 ETETVHLFIPALS-VGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEA 462
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ +I E F P + V A + V S G ++G+GG V+E++
Sbjct: 463 QFK---AQG---RIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSL 516
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQDA 198
+ A + V P+DQ P +D++V ++ G++++ Q A
Sbjct: 517 SSAEV-VVPRDQTP---DENDQVVVKITGHFYACQVA 549
Score = 115 (45.5 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 47/209 (22%), Positives = 94/209 (44%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q NP P +RG PG + PG +V + ++ +LL VG+
Sbjct: 161 QQNPSPQLRG---RRG--PGQRGSSRQASPG--SVSKQKPC----DLPLRLLVPTQFVGA 209
Query: 64 LIGKGGSIVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRV-H 120
+IGK G+ +R +T + I + + +E+ I ++S E + S A +++ + H
Sbjct: 210 IIGKEGATIRNITKQTQSKIDVHRKENTGAAEKSITILSTPEGT----SAACKSILEIMH 265
Query: 121 SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS 180
+I F + + ++L H+ +G L+G+ G + ++ + T I + P + +
Sbjct: 266 KEAQDIKFT--EEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLY-N 322
Query: 181 PHDEIVQVIGNYHSVQDALFHITSRLRET 209
P + + V G+ + A I ++RE+
Sbjct: 323 P-ERTITVKGSVETCAKAEEEIMKKIRES 350
Score = 67 (28.6 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAA 410
T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G + A
Sbjct: 407 TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKA 466
Query: 411 QSLIHAFI 418
Q I+ I
Sbjct: 467 QGRIYGKI 474
Score = 57 (25.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 357 IPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQSLI 414
+P V G+ ++ ++ +S A VVV D P + VV+ ++G + AQ I
Sbjct: 494 VPSFAAGRVIGKGGKTVNELQSLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKI 553
Query: 415 HAFI 418
+
Sbjct: 554 QEIL 557
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 133 (51.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 44/190 (23%), Positives = 85/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + + +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEI 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMV 400
G+ +A + +IEV +P+ + V G N + I+ +G + P G + E V
Sbjct: 245 GDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQV 303
Query: 401 SGTSDQMRAAQSLIHAFIL 419
G D+ + A +I+ IL
Sbjct: 304 MGPPDRCQHAAHVINELIL 322
Score = 59 (25.8 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEG--VVMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P + + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARHLI 421
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 160 (61.4 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 65/213 (30%), Positives = 110/213 (51%)
Query: 19 GYAPGYHSRGYS----SGP------GHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKG 68
G PG S G S SGP G+++ G + E E V + L VG++IGK
Sbjct: 373 GLFPGAASGGISPSVVSGPPPGAQAGYQSFGAQ----MESETVHLFIPAL-AVGAIIGKQ 427
Query: 69 GSIVRTFQNETGASIKIA--DILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEI 126
G ++ GASIKIA D + D+++R+V+IS ++ + AQ R+ ++ E
Sbjct: 428 GQHIKQLSRFAGASIKIAPADGI-DAKQRMVIISGPPEAQFK---AQG---RIFGKLKEE 480
Query: 127 GF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHD 183
F P + V A + V S G ++G+GG V+E++ T A + V P+DQ P +D
Sbjct: 481 NFFGPKEEVKLEAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTP---DEND 536
Query: 184 EIV-QVIGNYHSVQDALFHITSRLRETIFPMKR 215
++V ++ G++++ Q A +++E I ++R
Sbjct: 537 QVVVKITGHFYASQLA----QRKIQEIISQVRR 565
Score = 115 (45.5 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 46/189 (24%), Positives = 88/189 (46%)
Query: 23 GYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
G++ RG G ++G R ++ + +V +LL VG++IGK G+ +R +T +
Sbjct: 171 GFNPRG-PPRQGSPSLGARPKL--QSDVPLRLLVPTQFVGAIIGKEGATIRNITKQTHSK 227
Query: 83 IKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLV 140
I I + +E+ I V S E S A +M + + A I + + + ++L
Sbjct: 228 IDIHRKENAGAAEKPITVHSTPEGC----SSACRNIMEIMQKEA-IDTKITEEIPLKILA 282
Query: 141 HSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALF 200
H+ +G L+G+ G + ++ + T I + P Q +P + + V G + A
Sbjct: 283 HNNFVGRLIGKEGRNLKKIEQDTDTKITISPL-QDLTLYNP-ERTITVKGTLDACAKAEE 340
Query: 201 HITSRLRET 209
I ++RE+
Sbjct: 341 EIMKKVRES 349
Score = 72 (30.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 24/96 (25%), Positives = 48/96 (50%)
Query: 328 ASSGFTPR--NRP---VESG--NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQIS 380
AS G +P + P ++G + A + S T+ + IP L + + G+ ++ + + +
Sbjct: 379 ASGGISPSVVSGPPPGAQAGYQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFA 438
Query: 381 GANVVVNDPKPG--ATEGVVMVSGTSDQMRAAQSLI 414
GA++ + P G A + +V++SG + AQ I
Sbjct: 439 GASIKIA-PADGIDAKQRMVIISGPPEAQFKAQGRI 473
Score = 56 (24.8 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 16/66 (24%), Positives = 30/66 (45%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A VVV D P + VV+ ++G + AQ
Sbjct: 495 IKVPSFAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQR 554
Query: 413 LIHAFI 418
I I
Sbjct: 555 KIQEII 560
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 107 (42.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 42/174 (24%), Positives = 79/174 (45%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR 108
+V ++LC + ++G G+ + ++ET A I I++ + ERIV + R +
Sbjct: 66 DVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYV--RGTCD-- 121
Query: 109 HSPAQDAVMRVHSRIAEIGFEP-GQ--AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
A+ M V + + E G E G+ + LL+ +GC++G+ G + E+ + A
Sbjct: 122 -DVAKAYGMIVRALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAA 180
Query: 166 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 219
+ P +D I+ + G ++ A F+I+ L F M+ P N
Sbjct: 181 KLFASPNQLL----LSNDRILTINGVPDAIHIATFYISQTLLN--FQMESPQKN 228
Score = 96 (38.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 18/73 (24%), Positives = 43/73 (58%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 401
GNH ++ E+ I + ++ +V G++ +++ +++ +G ++++ DP G++E + +
Sbjct: 323 GNHL-LMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIR 381
Query: 402 GTSDQMRAAQSLI 414
GT +AA LI
Sbjct: 382 GTFMASQAAIMLI 394
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 159 (61.0 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 49/155 (31%), Positives = 85/155 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL-PDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 408 ESETVHLFIPAL-AVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEA 466
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V A + V S G ++G+GG V+E++
Sbjct: 467 QFK---AQG---RIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNL 520
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQ 196
T A + V P+DQ P +D++V ++ G++++ Q
Sbjct: 521 TSAEV-VVPRDQTP---DENDQVVVKITGHFYACQ 551
Score = 110 (43.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 46/203 (22%), Positives = 89/203 (43%)
Query: 9 PPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKG 68
PP P +RG+ RG P + R + +V ++L VG++IGK
Sbjct: 163 PPQQHPQGRRGFG----QRG---PPRQGSPSATTRQKPQSDVPLRMLVPTQFVGAIIGKE 215
Query: 69 GSIVRTFQNETGASIKI--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEI 126
G+ +R +T + I I + +E+ I + S E S A +M + + A+
Sbjct: 216 GATIRNITKQTQSKIDIHRKENAGAAEKPITIHSTPEGC----STACKIIMEIMQKEAQ- 270
Query: 127 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
+ + + ++L H+ +G L+G+ G + ++ + T I + P Q +P + +
Sbjct: 271 DTKFTEEIPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPL-QDLTLYNP-ERTI 328
Query: 187 QVIGNYHSVQDALFHITSRLRET 209
V G+ + A I ++RE+
Sbjct: 329 TVKGSIETCAKAEEEIMKKIRES 351
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 408
S T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G +
Sbjct: 409 SETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQF 468
Query: 409 AAQSLIH 415
AQ I+
Sbjct: 469 KAQGRIY 475
Score = 53 (23.7 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A VVV D P + VV+ ++G + AQ
Sbjct: 496 IKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYACQLAQR 555
Query: 413 LIHAFI 418
I +
Sbjct: 556 KIQEIL 561
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 136 (52.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 45/190 (23%), Positives = 85/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + + L
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGSSTIQEL 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 96 (38.9 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 46/187 (24%), Positives = 79/187 (42%)
Query: 31 SGPG-HETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS-IKIAD- 87
+GPG H V G + + +LL KVG +IGKGG ++ Q TG + I D
Sbjct: 150 NGPGFHNDVDGSS-------TIQELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDG 202
Query: 88 ILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLL-------- 139
LP ++ + I+ + A++ V+ + + F + + +
Sbjct: 203 PLPTGADKPLRITG---DPFKVQQAREMVLEIIREKDQADFRGVRGDFSSRMGGGSIEVS 259
Query: 140 VHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDAL 199
V +G ++GR G ++ +++ G I+ P D SP + QV+G Q A
Sbjct: 260 VPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGI----SP-ERAAQVMGPPDRCQHAA 314
Query: 200 FHITSRL 206
H+ S L
Sbjct: 315 -HVISEL 320
Score = 67 (28.6 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 20/65 (30%), Positives = 29/65 (44%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEG--VVMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P G V + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGLRVFTIRGVPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARHLI 421
Score = 66 (28.3 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMV 400
G+ ++ + +IEV +P+ + V G N + I+ +G + P G + E V
Sbjct: 245 GDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQV 303
Query: 401 SGTSDQMRAAQSLIHAFIL 419
G D+ + A +I IL
Sbjct: 304 MGPPDRCQHAAHVISELIL 322
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 133 (51.9 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 44/190 (23%), Positives = 85/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + + +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEI 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 70 (29.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMV 400
G+ +A + +IEV +P+ + V G N + I+ +G + P G + E V
Sbjct: 245 GDFSARVGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQV 303
Query: 401 SGTSDQMRAAQSLIHAFIL 419
G D+ + A +I+ IL
Sbjct: 304 MGPPDRCQHAAHVINELIL 322
Score = 59 (25.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEG--VVMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P + + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGDNIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGIPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARHLI 421
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 113 (44.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 30/134 (22%), Positives = 63/134 (47%)
Query: 289 IPFPYGSERPGHGPTFDRPP---SPRSWTPQ-GVGGGDPRGFDASSGFTPRNRPVESGNH 344
+P+ +G P P +P +P+ TP G G P + A PR P +
Sbjct: 327 VPYLHGQHAPA--PVAPQPMHYGAPQ--TPYAGAGPHQPTPYGAPQAAQPRGGPTPAAPV 382
Query: 345 AAILTST--TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 402
+ T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++G
Sbjct: 383 GGAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITG 442
Query: 403 TSDQMRAAQSLIHA 416
T + + A ++++
Sbjct: 443 TQECNQMALYMLYS 456
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 22/80 (27%), Positives = 45/80 (56%)
Query: 127 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 384 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 438
Query: 187 QVIGNYHSVQDALFHITSRL 206
+ G Q AL+ + SRL
Sbjct: 439 TITGTQECNQMALYMLYSRL 458
Score = 89 (36.4 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 54 LLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVI 99
L+ H+ +GS+IGKGG+ +R Q+ +GA + +D LP S ER +VI
Sbjct: 196 LIPHI-LIGSIIGKGGTRIREIQDASGARLNASDACLPLSTERSLVI 241
Score = 72 (30.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV--FPKDQAPRC---GSPHDEIVQVIG 190
R ++ SQ+ ++G+GG VS++RR +GA V + + R P D + + G
Sbjct: 111 RAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 169
>UNIPROTKB|O57526 [details] [associations]
symbol:igf2bp3-b "Insulin-like growth factor 2 mRNA-binding
protein 3-B" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0051028 HSSP:Q9Y6M1
HOVERGEN:HBG052725 KO:K13197 EMBL:AF042353 EMBL:AF064633
EMBL:BC057700 RefSeq:NP_001079932.1 UniGene:Xl.240
ProteinModelPortal:O57526 SMR:O57526 GeneID:379623 KEGG:xla:379623
CTD:379623 Xenbase:XB-GENE-6255198 Uniprot:O57526
Length = 593
Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 49/155 (31%), Positives = 85/155 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL-PDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 416 ESETVHLFIPAL-AVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEA 474
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V A + V S G ++G+GG V+E++
Sbjct: 475 QFK---AQG---RIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGKTVNELQNL 528
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQ 196
T A + V P+DQ P +D++V ++ G++++ Q
Sbjct: 529 TSAEV-VVPRDQTP---DENDQVVVKITGHFYASQ 559
Score = 112 (44.5 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 43/187 (22%), Positives = 86/187 (45%)
Query: 27 RGYSS-GPGHE-TVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIK 84
RG+ GP + + G R + EV ++L VG++IGK G+ +R +T + I
Sbjct: 180 RGFGQRGPARQGSPGAAARPKPQSEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKID 239
Query: 85 I--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHS 142
I + +E+ I + S E S A +M + + A+ + + + ++L H+
Sbjct: 240 IHRKENAGAAEKPITIHSTPEGC----SAACKIIMEIMQKEAQ-DTKFTEEIPLKILAHN 294
Query: 143 QQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202
+G L+G+ G + ++ + T I + P Q +P + + V G+ + A +
Sbjct: 295 NFVGRLIGKEGRNLKKIEQDTDTKITISPL-QDLTLYNP-ERTITVKGSIETCAKAEEEV 352
Query: 203 TSRLRET 209
++RE+
Sbjct: 353 MKKIRES 359
Score = 73 (30.8 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 24/110 (21%), Positives = 47/110 (42%)
Query: 307 PPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVY 366
PPS P G P S+ + P + ES T+ + IP L + +
Sbjct: 386 PPSSSGMPPPSAGVSSPT---TSASYPPFGQQPES---------ETVHLFIPALAVGAII 433
Query: 367 GENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQSLIH 415
G+ ++ + + +GA++ + + P A +V+++G + AQ I+
Sbjct: 434 GKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQFKAQGRIY 483
Score = 53 (23.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A VVV D P + VV+ ++G + AQ
Sbjct: 504 IKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDQVVVKITGHFYASQLAQR 563
Query: 413 LIHAFI 418
I +
Sbjct: 564 KIQEIL 569
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 130 (50.8 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 45/176 (25%), Positives = 79/176 (44%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISARE 103
E E K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I
Sbjct: 54 EGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTV 113
Query: 104 NS----------EMRHSPAQDAVMRVHSRIA-EIGFEPGQAVVARLLVHSQQIGCLLGRG 152
+ ++R P S + + P + A+L+V + G ++G+G
Sbjct: 114 EALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPDRIKQAKLIVPNSTAGLIIGKG 173
Query: 153 GHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G V + +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 174 GATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQNRKAVEIIVQKIQE 226
Score = 71 (30.1 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 34/168 (20%), Positives = 70/168 (41%)
Query: 256 HSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTP 315
+++ G+ P+ AA + +P ++ + Y SE G G P +P +
Sbjct: 316 NTLGLGLNPAAASGVLAAVAASANPAAAAAANLLA-TYASEASGGG---GHPAAP---SL 368
Query: 316 QGVGGGD-PRGFDASSGFTPRNRPVESGN-----HAAILTSTTIEVVIPQLYMAHVYGEN 369
G G AS+G+ + P+ + + A +E+ +P+ + + G+
Sbjct: 369 GGFSLGSLAAATGASNGYLNPSSPLVASSLLGTEKLAEGGKEVVEIAVPENLVGAILGKG 428
Query: 370 NSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLI 414
L ++++GA + ++ PG V ++G+ +AAQ LI
Sbjct: 429 GKTLVEYQELTGARIQISKKGEFIPGTRNRKVTITGSPAATQAAQYLI 476
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 135 (52.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 45/190 (23%), Positives = 85/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + + L
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEL 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 67 (28.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+IEV +P+ + V G N + I+ +G + P G + E V G D+ + A
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQVMGPPDRCQHA 313
Query: 411 QSLIHAFIL 419
+I+ IL
Sbjct: 314 ARIINELIL 322
Score = 60 (26.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEG--VVMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P + + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARHLI 421
>UNIPROTKB|D4A8D6 [details] [associations]
symbol:D4A8D6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00559929
Ensembl:ENSRNOT00000045980 Uniprot:D4A8D6
Length = 330
Score = 116 (45.9 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 37/122 (30%), Positives = 60/122 (49%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS++GK G R E G I I + + ERI+ + + N+ +
Sbjct: 14 LTIRLLMHGKEVGSIMGKKGESARKLCEECGTLINILE--ENCLERIITFAGQRNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S IA +V L+V Q G L+G+GG + E+R TGA +
Sbjct: 72 FAMIIDKLEGDLSSSIANSTAASRPSVNLCLVVPDCQCGSLIGKGGCKIKEIRENTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 80 (33.2 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 333 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 392
TP + +G A+ T T+ E+ +P + + + ++ + Q GA + + +P G
Sbjct: 236 TPEMKGYCAGLDASAQT-TSHELTVPNDLIGCIIRHQGAEINEVCQACGAQIKIANPMEG 294
Query: 393 ATEGVVMVSGTSDQMRAAQSLI 414
+T+ V ++G++ + AQ LI
Sbjct: 295 STDWQVTITGSTASISLAQYLI 316
Score = 79 (32.9 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 62 GSLIGKGGSIVRTFQNETGASIKIAD-ILPDSEE 94
GSLIGKGG ++ + TGA +++A +LP+S E
Sbjct: 110 GSLIGKGGCKIKEIRENTGAQVQVAGHMLPNSTE 143
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 157 (60.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 49/155 (31%), Positives = 84/155 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADIL-PDSEERIVVISARENS 105
E E V + L VG++IGK G ++ GASIKIA PD++ R+V+I+ +
Sbjct: 417 ESETVHLFIPAL-AVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEA 475
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V S G ++G+GG V+E++
Sbjct: 476 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIKVPSYAAGRVIGKGGKTVNELQNL 529
Query: 163 TGASIRVFPKDQAPRCGSPHDEIV-QVIGNYHSVQ 196
T A + V P+DQ P +DE+V ++ G++++ Q
Sbjct: 530 TSAEV-VVPRDQTP---DENDEVVVKITGHFYASQ 560
Score = 110 (43.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 44/187 (23%), Positives = 85/187 (45%)
Query: 27 RGYSS-GPGHE-TVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIK 84
RG+ GP + + G R + EV ++L VG++IGK G+ +R +T + I
Sbjct: 181 RGFGQRGPARQGSPGAAARPKPQTEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKID 240
Query: 85 I--ADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHS 142
I + +E+ I + S E S A +M + + A+ + + + ++L H+
Sbjct: 241 IHRKENAGAAEKPITIHSTPEGC----SAACKIIMEIMQKEAQ-DTKFTEEIPLKILAHN 295
Query: 143 QQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202
+G L+G+ G + ++ + T I + P Q +P + + V G+ A I
Sbjct: 296 NFVGRLIGKEGRNLKKIEQDTDTKITISPL-QDLTLYNP-ERTITVKGSIEPCAKAEEEI 353
Query: 203 TSRLRET 209
++RE+
Sbjct: 354 MKKIRES 360
Score = 68 (29.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 15/67 (22%), Positives = 35/67 (52%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 408
S T+ + IP L + + G+ ++ + + +GA++ + + P A +V+++G +
Sbjct: 418 SETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAPAEGPDAKLRMVIITGPPEAQF 477
Query: 409 AAQSLIH 415
AQ I+
Sbjct: 478 KAQGRIY 484
Score = 53 (23.7 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 355 VVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVM-VSGTSDQMRAAQS 412
+ +P V G+ ++ ++ ++ A VVV D P + VV+ ++G + AQ
Sbjct: 505 IKVPSYAAGRVIGKGGKTVNELQNLTSAEVVVPRDQTPDENDEVVVKITGHFYASQLAQR 564
Query: 413 LIHAFI 418
I +
Sbjct: 565 KIQEIL 570
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 135 (52.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 45/190 (23%), Positives = 85/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + + L
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEL 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 66 (28.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+IEV +P+ + V G N + I+ +G + P G + E V G D+ + A
Sbjct: 255 SIEVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFK-PDDGISPERAAQVMGPPDRCQHA 313
Query: 411 QSLIHAFIL 419
+I+ IL
Sbjct: 314 ARIINELIL 322
Score = 60 (26.2 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEG--VVMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P + + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPNLRIFTIRGAPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARHLI 421
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 156 (60.0 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 49/156 (31%), Positives = 82/156 (52%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENS 105
E+E V + VG++IGK G ++ ASIKIA PDS+ R+VVI+ +
Sbjct: 403 EQETVHVFI-PAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVVITGPPEA 461
Query: 106 EMRHSPAQDAVMRVHSRIAEIGF-EPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRRA 162
+ + AQ R++ ++ E F P + V + V + G ++G+GG V+E++
Sbjct: 462 QFK---AQG---RIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 515
Query: 163 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
T A + V P+DQ P IV++IG++++ Q A
Sbjct: 516 TAAEV-VVPRDQTP--DENEQVIVKIIGHFYASQMA 548
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 107 (42.7 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL +VGS+IGK G V+ + E+GA + I++ + ERI+ ++ N+ +
Sbjct: 26 LTIRLLMQGKEVGSIIGKKGESVKK-REESGAHLNISE--GNCPERIITLAGPTNATFK- 81
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 164
+ A + SR + V +RL+V Q G L+G+G + E+ TG
Sbjct: 82 AFAMIKLEEDRSRSMTNSTAASRPVTSRLVVPDSQCGSLIGKGICKIKEVGETTG 136
Score = 89 (36.4 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 21/77 (27%), Positives = 43/77 (55%)
Query: 339 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 398
+E+G+ A+ TT + P + + G + ++ I Q+SGA + + +P+ G+T+ V
Sbjct: 272 IEAGSDAS--AQTTSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPE-GSTDRQV 328
Query: 399 MVSGTSDQMRAAQSLIH 415
++G + + AQ LI+
Sbjct: 329 TITGPAASISLAQYLIN 345
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 145 (56.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 38/122 (31%), Positives = 66/122 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 71
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 167
+ D + + S + V RL+V + Q G L+G+GG + E+R +TGA +
Sbjct: 72 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
Query: 168 RV 169
+V
Sbjct: 132 QV 133
Score = 41 (19.5 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 296 ERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 338
E P G T P P S +P GG R G D++S F P P
Sbjct: 168 ESPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 210
>UNIPROTKB|B4DT31 [details] [associations]
symbol:FUBP1 "cDNA FLJ53425, highly similar to Far upstream
element-binding protein 1" species:9606 "Homo sapiens" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0003723 EMBL:AC096948 UniGene:Hs.567380
HGNC:HGNC:4004 HOGENOM:HOG000231552 HOVERGEN:HBG000625
ChiTaRS:FUBP1 InterPro:IPR015096 Pfam:PF09005 EMBL:AK300032
IPI:IPI00641948 SMR:B4DT31 STRING:B4DT31 Ensembl:ENST00000436586
UCSC:uc010orm.2 OMA:NGQEGDQ Uniprot:B4DT31
Length = 665
Score = 133 (51.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
+G P P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 84 EGMPSPFKDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 135
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 136 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 191
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 192 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 248
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 249 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 278
Score = 65 (27.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T E + ++G D+ + A
Sbjct: 299 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPERIAQITGPPDRCQHAA 357
Query: 412 SLI 414
+I
Sbjct: 358 EII 360
Score = 57 (25.1 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 403 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 462
Query: 413 LI 414
LI
Sbjct: 463 LI 464
Score = 52 (23.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 475 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 521
Score = 41 (19.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 500 TPMGPYNPAPYNPGPPGPAPH 520
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 131 (51.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 44/190 (23%), Positives = 84/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRTVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + + + +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEI 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
L+ + ++G ++GRGG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 LIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDAFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 64 (27.6 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+IEV +P+ + V G N + I+ +G + P G + E V G D+ + A
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQVMGPPDRCQHA 313
Query: 411 QSLIHAFIL 419
+I IL
Sbjct: 314 AHIISELIL 322
Score = 60 (26.2 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGV--VMVSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P + + + G Q+
Sbjct: 357 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEV 416
Query: 410 AQSLI 414
A+ LI
Sbjct: 417 ARQLI 421
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 152 (58.6 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 69/260 (26%), Positives = 111/260 (42%)
Query: 60 KVGSLIGKGGSIVRTFQNETGASIKI---ADILPDSEERIVVISARENSEMRHSPAQDAV 116
KVG+LIGKGG +VR Q +GA I+I A+ P S R V I S + A
Sbjct: 242 KVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTV------SCIEKAE 295
Query: 117 MRVHSRIAEIGFEPGQAVVAR-------LLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
+++ IAE+ A+ AR + V S ++G ++GRGG + M+ + A I++
Sbjct: 296 KLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNMQTKSRARIQL 355
Query: 170 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLXXXX 229
P+++ + + V++ G+ + A T+ +++ ++ RP P +G
Sbjct: 356 IPQNEGD---ASKERTVRISGDKRQIDIA----TALIKDVMYQDGRPSPYSGGFNQQAYQ 408
Query: 230 XXXXXXXXXXXXXXXXGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM-VPPNSDR 288
G + P H G PSQ + S G P +PP S
Sbjct: 409 PRGPGGPPQWGSRGPHGPHSMPYNYHHG---GPYPSQGSHFRPPNSGGYPPQHMPPRSG- 464
Query: 289 IPFPYGS---ERPGHGPTFD 305
YGS +RP H +D
Sbjct: 465 ----YGSGWEQRPPHSGPYD 480
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 125 (49.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 44/179 (24%), Positives = 84/179 (46%)
Query: 36 ETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNETGASIKIADILPDS- 92
E +G + + ++ V+ + DK VG +IG+GG + Q E+G I+IA PDS
Sbjct: 51 ERIGNQLGALVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIA---PDSG 107
Query: 93 --EERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLL 149
ER V++ E+ E V R + G + + +L+ + ++G ++
Sbjct: 108 GMPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVI 167
Query: 150 GRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+GG + +++ TG + + P G+ D+ +++ G+ VQ A + +RE
Sbjct: 168 GKGGETIKQLQERTGVKMIMIQDGPMPT-GA--DKPLRITGDAFKVQQAREMVLEIIRE 223
Score = 97 (39.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 48/188 (25%), Positives = 81/188 (43%)
Query: 31 SGPG-HETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS-IKIAD- 87
+GPG H V G + + +E+ L KVG +IGKGG ++ Q TG I I D
Sbjct: 139 NGPGFHNDVDGNSTI---QEI----LIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDG 191
Query: 88 ILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEP---------GQAVVARL 138
+P ++ + I+ + A++ V+ + + F G + +
Sbjct: 192 PMPTGADKPLRITG---DAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSI-EV 247
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
V +G ++GR G ++ +++ G I+ P D SP + + QV+G Q A
Sbjct: 248 SVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGI----SP-ERVAQVMGLPDRCQHA 302
Query: 199 LFHITSRL 206
HI S L
Sbjct: 303 A-HIISEL 309
Score = 68 (29.0 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+IEV +P+ + V G N + I+ +G + P G + E V V G D+ + A
Sbjct: 244 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERVAQVMGLPDRCQHA 302
Query: 411 QSLIHAFIL 419
+I IL
Sbjct: 303 AHIISELIL 311
Score = 66 (28.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P GV + + G Q+
Sbjct: 346 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIEL 405
Query: 410 AQSLI 414
A+ LI
Sbjct: 406 ARHLI 410
Score = 37 (18.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 276 HGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG 319
H +D V S P +G PT P+++ QG G
Sbjct: 408 HLIDEKVGGTSMGGPGGFGQSPFNQAPTTPHQNGPQAFMTQGWG 451
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 128 (50.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 44/190 (23%), Positives = 84/190 (44%)
Query: 22 PGYHSRGYSSGPGHETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNET 79
P + G P + VG + + ++ V+ + DK VG +IG+GG + Q E+
Sbjct: 48 PSVYGYGVQKRPLDDGVGNQLGALVHQRAVITEEFKVPDKMVGFIIGRGGEQISRIQAES 107
Query: 80 GASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARL 138
G I+IA ER V++ E+ E V R + G + V +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTVQEI 167
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
+ + ++G ++G+GG + +++ TG + + P G+ D+ +++ G+ VQ A
Sbjct: 168 PIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPT-GA--DKPLRITGDPFKVQQA 224
Query: 199 LFHITSRLRE 208
+ +RE
Sbjct: 225 REMVLEIIRE 234
Score = 66 (28.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMV 400
G+ ++ + +IEV +P+ + V G N + I+ +G + P G + E V
Sbjct: 245 GDFSSRMGGGSIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERAAQV 303
Query: 401 SGTSDQMRAAQSLIHAFIL 419
G D+ + A +I IL
Sbjct: 304 MGPPDRCQHAAHVISELIL 322
Score = 58 (25.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 365 VYGENNSNLSHIRQISGANVVVNDPKPGATEG---VVMVSGTSDQMRAAQSLI 414
V G+ N+ I Q SGA+V + P +T+ + + G Q+ A+ LI
Sbjct: 369 VIGKGGENIKSINQQSGAHVELQRNPPPSTDPNLRIFTIRGLPPQIEVARHLI 421
>UNIPROTKB|E2RJQ2 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AAEX03004886
Ensembl:ENSCAFT00000032426 Uniprot:E2RJQ2
Length = 668
Score = 133 (51.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 55/212 (25%), Positives = 99/212 (46%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
+G P P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 86 EGMPSPFKDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 137
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 138 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 193
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 194 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 250
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 251 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 280
Score = 62 (26.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 301 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 359
Query: 412 SLI 414
+I
Sbjct: 360 EII 362
Score = 57 (25.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 405 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 464
Query: 413 LI 414
LI
Sbjct: 465 LI 466
Score = 52 (23.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 477 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 523
Score = 41 (19.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 502 TPMGPYNPAPYNPGPPGPAPH 522
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 119 (46.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 42/170 (24%), Positives = 77/170 (45%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 111
Query: 109 HSPAQDAVMRVHSRIAE---IGFEPGQAVV-------ARLLVHSQQIGCLLGRGGHIVSE 158
H + + + +A+ + Q V +++V + G ++G+GG V
Sbjct: 112 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 171
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 172 IMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 218
Score = 73 (30.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 399 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 458
Query: 410 AQSLI 414
AQ LI
Sbjct: 459 AQYLI 463
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 119 (46.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 42/170 (24%), Positives = 77/170 (45%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 52 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 111
Query: 109 HSPAQDAVMRVHSRIAE---IGFEPGQAVV-------ARLLVHSQQIGCLLGRGGHIVSE 158
H + + + +A+ + Q V +++V + G ++G+GG V
Sbjct: 112 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 171
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 172 IMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 218
Score = 73 (30.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 399 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 458
Query: 410 AQSLI 414
AQ LI
Sbjct: 459 AQYLI 463
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 125 (49.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 44/179 (24%), Positives = 84/179 (46%)
Query: 36 ETVGGR-NRMFYEEEVVFKLLCHLDK-VGSLIGKGGSIVRTFQNETGASIKIADILPDS- 92
E +G + + ++ V+ + DK VG +IG+GG + Q E+G I+IA PDS
Sbjct: 80 ERIGNQLGALVHQRAVITEDFKVPDKMVGFIIGRGGEQISRIQIESGCKIQIA---PDSG 136
Query: 93 --EERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLL 149
ER V++ E+ E V R + G + + +L+ + ++G ++
Sbjct: 137 GMPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTIQEILIPASKVGLVI 196
Query: 150 GRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+GG + +++ TG + + P G+ D+ +++ G+ VQ A + +RE
Sbjct: 197 GKGGETIKQLQERTGVKMIMIQDGPMPT-GA--DKPLRITGDAFKVQQAREMVLEIIRE 252
Score = 97 (39.2 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 48/188 (25%), Positives = 81/188 (43%)
Query: 31 SGPG-HETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS-IKIAD- 87
+GPG H V G + + +E+ L KVG +IGKGG ++ Q TG I I D
Sbjct: 168 NGPGFHNDVDGNSTI---QEI----LIPASKVGLVIGKGGETIKQLQERTGVKMIMIQDG 220
Query: 88 ILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEP---------GQAVVARL 138
+P ++ + I+ + A++ V+ + + F G + +
Sbjct: 221 PMPTGADKPLRITG---DAFKVQQAREMVLEIIREKDQADFRGVRNDFSSRMGGGSI-EV 276
Query: 139 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198
V +G ++GR G ++ +++ G I+ P D SP + + QV+G Q A
Sbjct: 277 SVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGI----SP-ERVAQVMGLPDRCQHA 331
Query: 199 LFHITSRL 206
HI S L
Sbjct: 332 A-HIISEL 338
Score = 68 (29.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/69 (28%), Positives = 32/69 (46%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+IEV +P+ + V G N + I+ +G + P G + E V V G D+ + A
Sbjct: 273 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPERVAQVMGLPDRCQHA 331
Query: 411 QSLIHAFIL 419
+I IL
Sbjct: 332 AHIISELIL 340
Score = 66 (28.3 bits), Expect = 4.5e-07, Sum P(2) = 4.5e-07
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRA 409
I +P V G+ N+ I Q SGA+V + +P P GV + + G Q+
Sbjct: 375 ITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNTDPGVRIFTIRGVPQQIEL 434
Query: 410 AQSLI 414
A+ LI
Sbjct: 435 ARHLI 439
Score = 37 (18.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 276 HGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG 319
H +D V S P +G PT P+++ QG G
Sbjct: 437 HLIDEKVGGTSMGGPGGFGQSPFNQAPTTPHQNGPQAFMTQGWG 480
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 119 (46.9 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 42/170 (24%), Positives = 77/170 (45%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 109 HSPAQDAVMRVHSRIAE---IGFEPGQAVV-------ARLLVHSQQIGCLLGRGGHIVSE 158
H + + + +A+ + Q V +++V + G ++G+GG V
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 172
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 173 VMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 219
Score = 73 (30.8 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 400 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 459
Query: 410 AQSLI 414
AQ LI
Sbjct: 460 AQYLI 464
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 98 (39.6 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ +P + + G ++ ++ IRQ+SGA + +P G+T+ V ++G + +
Sbjct: 233 TTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISL 292
Query: 410 AQSLIHA 416
AQ LI+A
Sbjct: 293 AQYLINA 299
Score = 89 (36.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 35/125 (28%), Positives = 59/125 (47%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+I K V+ Q E GA I I++ + ERI+ ++ N+ +
Sbjct: 14 LTIRLLMHGKEVGSIIRKSRESVKKLQ-EKGARINISE--GNCPERIITLAGPTNAIFKA 70
Query: 109 -----HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
P +D + + A P VV + Q G L+G+G + E+R +T
Sbjct: 71 FAMIIDKPEEDISSSMTNSTA--ASRPPVTVVP-----ASQCGSLIGKGK--IKEIREST 121
Query: 164 GASIR 168
GA ++
Sbjct: 122 GAQVQ 126
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 62 GSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
GSLIGKG ++ + TGA ++ A ++LP+S ER + I+
Sbjct: 106 GSLIGKGK--IKEIRESTGAQVQAAGNMLPNSTERAITIA 143
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 108 (43.1 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 354 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 413
Query: 412 SLI 414
L+
Sbjct: 414 YLL 416
Score = 82 (33.9 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 74/305 (24%), Positives = 112/305 (36%)
Query: 33 PGHET---VGGRNRMFYEEEVVFKLLCHLDKVGSL-IGKGGSIVRTFQNETGASIKIADI 88
P ET G R EEE FK + D++ L I ++ + + AS+ + D
Sbjct: 11 PNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNIKALRTDYNASVSVPD- 69
Query: 89 LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIG 146
ERI+ ISA + + + ++ + E G RLL+H G
Sbjct: 70 -SSGPERILSISADIET------IGEILKKIIPTLEEYQHYKGSDFDCELRLLIHQSLAG 122
Query: 147 CLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITS 204
++G G + E+R T +I++F + C PH D +V + G V + + I
Sbjct: 123 GIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDRVVECIKIILD 176
Query: 205 RLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPFHSMDRGMG 263
+ E+ P+K R P + + Y G G F M G G
Sbjct: 177 LISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGFDRMPPGRG 234
Query: 264 PSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRSWTPQGVGGGD 322
+P M P P P P G R G G + R P P P+G GD
Sbjct: 235 -GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPPPPPRG---GD 284
Query: 323 PRGFD 327
+D
Sbjct: 285 LMAYD 289
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 134 (52.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 48/179 (26%), Positives = 83/179 (46%)
Query: 45 FYEE-EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVIS 100
F+EE E K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I
Sbjct: 57 FHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQ 116
Query: 101 ----AREN------SEMRHSPAQDAVMRVHSRIA-EIGFEPGQAVVARLLVHSQQIGCLL 149
A N ++R P S + + P + A+L+V + G ++
Sbjct: 117 GTVEALNNVHDFIAEKVREMPQSAQKTEPVSILQPQTTVNPDRVKQAKLVVPNSTAGLII 176
Query: 150 GRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+GG V + +GA +++ Q P + + +V + G + A+ I +++E
Sbjct: 177 GKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTISGEPEQNRKAVEIIVQKIQE 232
Score = 54 (24.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGT 403
+E+ +P+ + + G+ L ++++GA + ++ PG V ++G+
Sbjct: 419 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGS 472
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 108 (43.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 325 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 384
Query: 412 SLI 414
L+
Sbjct: 385 YLL 387
Score = 89 (36.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 19/78 (24%), Positives = 43/78 (55%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ D+ P GS D I+ + G
Sbjct: 321 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI---DE-PLEGS-EDRIITITG 375
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 376 TQDQIQNAQYLLQNSVKQ 393
Score = 80 (33.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA 101
+E V ++L G++IGKGG ++ + + AS+ + D ERI+ ISA
Sbjct: 14 DEMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPD--SSGPERILSISA 66
Score = 67 (28.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 15 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 67
Query: 192 YHSVQDALFHITSRLRE 208
++ + L I L E
Sbjct: 68 IETIGEILKKIIPTLEE 84
>UNIPROTKB|Q96AE4 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0003700 GO:GO:0003723
GO:GO:0006366 GO:GO:0003697 GO:GO:0010628 EMBL:U05040 EMBL:AC096948
EMBL:BC017247 IPI:IPI00375441 IPI:IPI00853059 PIR:A53184
RefSeq:NP_003893.2 UniGene:Hs.567380 PDB:1J4W PDB:2KXH PDBsum:1J4W
PDBsum:2KXH ProteinModelPortal:Q96AE4 SMR:Q96AE4 DIP:DIP-47273N
IntAct:Q96AE4 MINT:MINT-1374324 STRING:Q96AE4 PhosphoSite:Q96AE4
DMDM:116241370 REPRODUCTION-2DPAGE:IPI00375441 PaxDb:Q96AE4
PRIDE:Q96AE4 DNASU:8880 Ensembl:ENST00000294623
Ensembl:ENST00000370768 GeneID:8880 KEGG:hsa:8880 UCSC:uc001dii.3
CTD:8880 GeneCards:GC01M078400 HGNC:HGNC:4004 HPA:HPA006149
MIM:603444 neXtProt:NX_Q96AE4 PharmGKB:PA28420 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
ChiTaRS:FUBP1 EvolutionaryTrace:Q96AE4 GenomeRNAi:8880
NextBio:33343 ArrayExpress:Q96AE4 Bgee:Q96AE4 CleanEx:HS_FUBP1
Genevestigator:Q96AE4 GermOnline:ENSG00000162613 InterPro:IPR015096
Pfam:PF09005 Uniprot:Q96AE4
Length = 644
Score = 127 (49.8 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 54/212 (25%), Positives = 97/212 (45%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 63 QKRPLEDGDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 114
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 115 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 170
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 171 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 227
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 228 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 65 (27.9 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T E + ++G D+ + A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPERIAQITGPPDRCQHAA 336
Query: 412 SLI 414
+I
Sbjct: 337 EII 339
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 441
Query: 413 LI 414
LI
Sbjct: 442 LI 443
Score = 52 (23.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 454 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 500
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 479 TPMGPYNPAPYNPGPPGPAPH 499
>UNIPROTKB|E9PEB5 [details] [associations]
symbol:FUBP1 "Far upstream element-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
EMBL:AC096948 HGNC:HGNC:4004 ChiTaRS:FUBP1 InterPro:IPR015096
Pfam:PF09005 IPI:IPI00644386 ProteinModelPortal:E9PEB5 SMR:E9PEB5
PRIDE:E9PEB5 Ensembl:ENST00000370767 ArrayExpress:E9PEB5
Bgee:E9PEB5 Uniprot:E9PEB5
Length = 655
Score = 127 (49.8 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 54/212 (25%), Positives = 97/212 (45%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 63 QKRPLEDGDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 114
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 115 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 170
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 171 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 227
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 228 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 65 (27.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T E + ++G D+ + A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPERIAQITGPPDRCQHAA 336
Query: 412 SLI 414
+I
Sbjct: 337 EII 339
Score = 57 (25.1 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 441
Query: 413 LI 414
LI
Sbjct: 442 LI 443
Score = 52 (23.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 454 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 500
Score = 41 (19.5 bits), Expect = 0.00017, Sum P(2) = 0.00016
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 479 TPMGPYNPAPYNPGPPGPAPH 499
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 113 (44.8 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 54/193 (27%), Positives = 92/193 (47%)
Query: 38 VGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDS---EE 94
+GG R EE FK+ + VG +IG+GG + Q E+G I+IA PDS +
Sbjct: 83 MGGPPRSVSEE---FKVPDGM--VGFIIGRGGEQISRLQQESGCKIQIA---PDSGGMPD 134
Query: 95 RIVVISARENSEMRHSPAQDAVM---RVHSRIAEIG-----FE----PGQAVVARLLVHS 142
R V ++ SP DA+M R+ S I E G F PG +V +++ +
Sbjct: 135 RSVTLTG--------SP--DAIMTAKRLLSEIVEKGRPSPAFHHNDGPGMSV-HEMMIPA 183
Query: 143 QQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202
+ G ++G+GG + +++ G + V +D G+ D+ +++ G+ VQ A +
Sbjct: 184 SKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQNTGA--DKPLRISGDPFKVQQAKDMV 240
Query: 203 TSRLRETIFPMKR 215
+R+ F +R
Sbjct: 241 MDLIRDQGFREQR 253
Score = 93 (37.8 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 44/183 (24%), Positives = 75/183 (40%)
Query: 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSE--ERIVVISARENSEMR 108
V +++ K G +IGKGG ++ Q G + + P + ++ + IS +
Sbjct: 176 VHEMMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRISG---DPFK 232
Query: 109 HSPAQDAVMRV------HSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSE 158
A+D VM + + E G G + V +G ++GR G ++ +
Sbjct: 233 VQQAKDMVMDLIRDQGFREQRGEYGSRAGGGGGGGESLDVPVPRFAVGIVIGRSGEMIKK 292
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP 218
++ TG I+ P D GS + I Q++G Q A IT LR ++ PG
Sbjct: 293 IQNDTGVRIQFKPDD-----GSTPERIAQIMGPPDRAQHAADIITDLLR-SVQAGGPPGH 346
Query: 219 NNG 221
G
Sbjct: 347 GGG 349
Score = 79 (32.9 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 30/75 (40%), Positives = 32/75 (42%)
Query: 253 GPFHSMDRGMGPSQPFDHQAAFSHGMD-PMVPPN--SDRIPFPYGSERPG-HGPTFDRPP 308
GP M GP P H SHG P PP P PYG PG HGP P
Sbjct: 447 GPVSPMGGPHGPPGP--HGGP-SHGPPGPQGPPAPMGPYNPGPYGQGPPGPHGP-----P 498
Query: 309 SPRSWTPQGVGGGDP 323
+P + PQG G G P
Sbjct: 499 AP--YQPQGWGNGYP 511
Score = 60 (26.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGPTFDR-PPSPRS-WTPQGVGGGDPRGFDASSGFTPR 335
+ PM P+ P P+G P HGP + PP+P + P G G P + + P+
Sbjct: 449 VSPMGGPHGP--PGPHGG--PSHGPPGPQGPPAPMGPYNPGPYGQGPPGPHGPPAPYQPQ 504
Score = 60 (26.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 24/103 (23%), Positives = 41/103 (39%)
Query: 315 PQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLS 374
P G GGG G G R R + N +P + + G+ +
Sbjct: 343 PPGHGGGGGGG----GGGRGRGRGQGNWNMGPPGGLQEFTFTVPTMKTGLIIGKGGETIK 398
Query: 375 HIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQSLI 414
+I Q SGA + + +P P + + + V G+ Q+ A+ L+
Sbjct: 399 NISQQSGARIELQRNPPPNSDPNIKIFTVRGSPQQIDYARQLV 441
Score = 57 (25.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAA 410
+++V +P+ + V G + + I+ +G + P G+T E + + G D+ + A
Sbjct: 269 SLDVPVPRFAVGIVIGRSGEMIKKIQNDTGVRIQFK-PDDGSTPERIAQIMGPPDRAQHA 327
Query: 411 QSLI 414
+I
Sbjct: 328 ADII 331
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 135 (52.6 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N +
Sbjct: 4 LTIRLLMHGKEVGSIIGKDGESVKKMRKESGARISISE--GNCPERIITLAGPTNFKSFA 61
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
+ S + V L+V + Q G L+G+GG + E+R +TG ++V
Sbjct: 62 MIIDKLEEDISSSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQV 121
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 116 (45.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/173 (20%), Positives = 77/173 (44%)
Query: 32 GPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPD 91
GP E + + + ++ + + + G +IGKGG V ++ETG ++ ++
Sbjct: 28 GPDGEPAPKTDEEYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQG 87
Query: 92 SEERIVVISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAV-VARLLVHSQQIGCLL 149
+R++ I+ E ++ A++ + G +LL+ Q+G ++
Sbjct: 88 VHDRVLTITGGCEGISKAYAVVARALLEGAPSMGMGGVVSNNGTHPIKLLISHNQMGTII 147
Query: 150 GRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202
GR G + ++ +G + V K+ P+ + +V+V G +Q A++ I
Sbjct: 148 GRQGLKIKHIQDVSGVRM-VAQKEMLPQST---ERVVEVQGTPEGIQRAVWEI 196
Score = 68 (29.0 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 26/100 (26%), Positives = 41/100 (41%)
Query: 319 GGGDPRGFDASSGFTPRNR--PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GGG R ++ S NR P N I T + IP + + G S +S I
Sbjct: 259 GGG--RSYNRRSDSDAANRGPPTHDENGEEIQTQN---ISIPADMVGCIIGRAGSKISEI 313
Query: 377 RQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
R+ SGA + + P E + + G++ A L++
Sbjct: 314 RKTSGARISIAKAPHDETGERMFTIMGSAKANETALFLLY 353
>UNIPROTKB|J9P014 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AAEX03004886
Ensembl:ENSCAFT00000046408 Uniprot:J9P014
Length = 644
Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 54/212 (25%), Positives = 97/212 (45%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 63 QKRPLEDGDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 114
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 115 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 170
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 171 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 227
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 228 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 336
Query: 412 SLI 414
+I
Sbjct: 337 EII 339
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 441
Query: 413 LI 414
LI
Sbjct: 442 LI 443
Score = 52 (23.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 454 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 500
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 479 TPMGPYNPAPYNPGPPGPAPH 499
>UNIPROTKB|F1S9S5 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:CU695021
Ensembl:ENSSSCT00000004173 Uniprot:F1S9S5
Length = 645
Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 54/212 (25%), Positives = 97/212 (45%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ ++R EE +K+ + VG
Sbjct: 63 QKRPLEDGDQPDAKK-VAPQNDSFGTQLPPMHQQ---QSRSVMTEE--YKVPDGM--VGF 114
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 115 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 170
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 171 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 227
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 228 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 257
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 278 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 336
Query: 412 SLI 414
+I
Sbjct: 337 EII 339
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 382 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 441
Query: 413 LI 414
LI
Sbjct: 442 LI 443
Score = 52 (23.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 454 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 500
Score = 41 (19.5 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 479 TPMGPYNPAPYNPGPPGPAPH 499
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 34/124 (27%), Positives = 62/124 (50%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ ++L H +VGS+IGK G V+ + ++ A I I++ ERI I+ + + H
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE--GSCPERITTITG-STAAVFH 74
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + A ++ + G V RL++ + Q G L+G+ G + E+R TGA
Sbjct: 75 AVSMIA-FKLDEDLCAAPANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGA 133
Query: 166 SIRV 169
++V
Sbjct: 134 QVQV 137
>UNIPROTKB|F1NV59 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 EMBL:AADN02012752 IPI:IPI00579990
Ensembl:ENSGALT00000014526 ArrayExpress:F1NV59 Uniprot:F1NV59
Length = 632
Score = 125 (49.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 54/212 (25%), Positives = 96/212 (45%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ + R EE +K+ + VG
Sbjct: 61 QKRPLEDGDQPDAKK-VAPQNDSFGNQLPPMHQ----QQRSVMTEE--YKVPDGM--VGF 111
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 112 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-K 167
Query: 121 SRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 168 GRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQ 224
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 225 NTGA--DKPLRITGDPYKVQQAKEMVLELIRD 254
Score = 63 (27.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 28/76 (36%), Positives = 31/76 (40%)
Query: 249 PSPVGPFHSMDRGM-GPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP 307
P P GP H + G GP P A PM P N P PY PG P P
Sbjct: 444 PVPHGP-HGVVPGPHGPPGPPGPGA-------PMGPYN----PAPYNPGPPGPAP--HGP 489
Query: 308 PSPRSWTPQGVGGGDP 323
P+P + PQG G P
Sbjct: 490 PAP--YAPQGWGNAYP 503
Score = 61 (26.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQS 412
EV IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 260 EVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAAE 318
Query: 413 LI 414
+I
Sbjct: 319 II 320
Score = 55 (24.4 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 26/80 (32%), Positives = 33/80 (41%)
Query: 246 GSYPSPVGPFHSMDRG--MGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPT 303
G P P GP G MGP P A ++ G P P+ P PY + G+
Sbjct: 451 GVVPGPHGPPGPPGPGAPMGPYNP----APYNPG-PPGPAPHGP--PAPYAPQGWGNAYP 503
Query: 304 FDRPPSPRSWTPQGVGGGDP 323
+PP+P P G G DP
Sbjct: 504 HWQPPNPPD--P-GKPGTDP 520
>UNIPROTKB|I3LRF8 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:FP312938
Ensembl:ENSSSCT00000030310 Uniprot:I3LRF8
Length = 265
Score = 121 (47.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 37/124 (29%), Positives = 64/124 (51%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERIV I+ ++ +
Sbjct: 44 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE--GNCPERIVTITGPTDAIFKA 101
Query: 110 ----SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ + V RV S + EI R++ +GC+LG+G ++ +TGA
Sbjct: 102 FAMIAYKFEEVSRV-SGLCEIAENAFGVWTQRVITLGVTVGCVLGQGPLCPPGLKGSTGA 160
Query: 166 SIRV 169
++V
Sbjct: 161 QVQV 164
Score = 54 (24.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 380 SGANV-VVNDPKPGATEGVVMVSGTSD 405
+GA V V D P +TE V +SGT D
Sbjct: 158 TGAQVQVAGDMLPNSTERAVTISGTPD 184
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 97 (39.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ +P + + G + ++ IRQ+SGA + +P G+T+ V ++G + +
Sbjct: 244 TTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISL 303
Query: 410 AQSLIHA 416
AQ LI+A
Sbjct: 304 AQYLINA 310
Score = 84 (34.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 34/125 (27%), Positives = 58/125 (46%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+I K V+ Q E A I I++ + ERI+ ++ N+ +
Sbjct: 17 LTIRLLMHGKEVGSIIRKSRESVKKLQ-EKSARINISE--GNCPERIITLAGPTNAIFKA 73
Query: 109 -----HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
P +D + + A P VV + Q G L+G+G + E+R +T
Sbjct: 74 FAMIIDKPEEDISSSMTNSTA--ASRPPVTVVP-----ASQCGSLIGKG--TIKEIREST 124
Query: 164 GASIR 168
GA ++
Sbjct: 125 GAQVQ 129
Score = 82 (33.9 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 129 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 188
E Q L + + IGC++GR G ++E+R+ +GA I K P GS D V +
Sbjct: 240 ESAQTTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQI----KTANPVEGST-DRQVTI 294
Query: 189 IGNYHSVQDALFHITSRL 206
G S+ A + I +RL
Sbjct: 295 TGPAASISLAQYLINARL 312
Score = 75 (31.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 62 GSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
GSLIGKG ++ + TGA ++ A ++LP+S ER + I+
Sbjct: 109 GSLIGKG--TIKEIRESTGAQVQAAGNMLPNSTERAITIA 146
>UNIPROTKB|E2QVT3 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
Ensembl:ENSCAFT00000029641 Uniprot:E2QVT3
Length = 743
Score = 108 (43.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 153 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 209
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 210 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 266
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 267 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 302
Score = 91 (37.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 50/206 (24%), Positives = 87/206 (42%)
Query: 26 SRGYSSGPG--HETV-GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
SRG PG H+ GG+N E ++ K G +IGKGG ++ Q G
Sbjct: 210 SRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIKQLQERAG-- 261
Query: 83 IKIADILPDSEERIVVISARENSE-MRHSPAQDAVMRVHSRIAEIGF----EPGQAVVAR 137
+K+ I S+ V R + + A + VM + + GF E G +
Sbjct: 262 VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGG 321
Query: 138 L--LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 195
+ V +G ++GR G ++ +++ G I+ F +D G+ ++I ++G
Sbjct: 322 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-FKQDD----GTGPEKIAHIMGPPDRC 376
Query: 196 QDALFHITSRLRETIFPMKRPGPNNG 221
+ A I + L +++ PGP G
Sbjct: 377 EHAA-RIINDLLQSL-RSGPPGPPGG 400
Score = 68 (29.0 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 498 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 554
Query: 309 SPRSWTPQGVGGGDP 323
+P + DP
Sbjct: 555 APHD-PNKAAAAADP 568
Score = 59 (25.8 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 511 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 550
Score = 54 (24.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 9 PPAAEPFHQRGYAPGYHSRG-YSSGPGHETVGG 40
PPA +P +G A G G + GP T GG
Sbjct: 13 PPAGDPLQGKGRARGPRRAGTHFGGPPLRTPGG 45
Score = 49 (22.3 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 31/115 (26%), Positives = 42/115 (36%)
Query: 316 QGVGGGDPRGFDASSGFTP--RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 373
Q + G P G G P R R GN T IP V G N+
Sbjct: 388 QSLRSGPP-GPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFS--IPTHKCGLVIGRGGENV 444
Query: 374 SHIRQISGANVVVN---DPKPGATEGVVMVSGTSDQMRAAQSLIHAFI---LCGV 422
I Q +GA V ++ P + ++ G+ Q+ A+ LI I LC V
Sbjct: 445 KAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLCPV 499
Score = 46 (21.3 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 12/63 (19%), Positives = 26/63 (41%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 412
I+V +P+ + V G + + I+ +G + E + + G D+ A
Sbjct: 322 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAAR 381
Query: 413 LIH 415
+I+
Sbjct: 382 IIN 384
Score = 44 (20.5 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 19/67 (28%), Positives = 25/67 (37%)
Query: 247 SYPS--PVGPFHSMDRGMGPSQPFDHQAAF-SHGMDPMVPPNSDRIPFPYGSERPGHGPT 303
+YP P P H ++ + P AA+ SH PP P P + P P
Sbjct: 547 TYPQWQPPAP-HDPNKAAAAADPNAAWAAYYSHYYQQ--PPG----PVPGPAPAPAAPPA 599
Query: 304 FDRPPSP 310
PP P
Sbjct: 600 QGEPPQP 606
>UNIPROTKB|E1BX03 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:AADN02012752
IPI:IPI00679838 Ensembl:ENSGALT00000014525 ArrayExpress:E1BX03
Uniprot:E1BX03
Length = 645
Score = 124 (48.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 52/211 (24%), Positives = 94/211 (44%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ + R EE +K+ + VG
Sbjct: 61 QKRPLEDGDQPDAKK-VAPQNDSFGNQLPPMHQ----QQRSVMTEE--YKVPDGM--VGF 111
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS--EERIVVISARENSEMRHSPAQDAVMRVHS 121
+IG+GG + Q E+G I+IA L ER +++ S D ++
Sbjct: 112 IIGRGGEQISRIQQESGCKIQIAPALDSGGLPERSCMLTGTPESVQSAKRLLDQIVE-KG 170
Query: 122 RIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 177
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 171 RPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQDGPQN 227
Query: 178 CGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 228 TGA--DKPLRITGDPYKVQQAKEMVLELIRD 256
Score = 63 (27.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 28/76 (36%), Positives = 31/76 (40%)
Query: 249 PSPVGPFHSMDRGM-GPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP 307
P P GP H + G GP P A PM P N P PY PG P P
Sbjct: 457 PVPHGP-HGVVPGPHGPPGPPGPGA-------PMGPYN----PAPYNPGPPGPAP--HGP 502
Query: 308 PSPRSWTPQGVGGGDP 323
P+P + PQG G P
Sbjct: 503 PAP--YAPQGWGNAYP 516
Score = 62 (26.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 277 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 335
Query: 412 SLI 414
+I
Sbjct: 336 EII 338
Score = 62 (26.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/102 (24%), Positives = 40/102 (39%)
Query: 316 QGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSH 375
+ V G+P G G R R + N ++P + G+ +
Sbjct: 343 RSVQAGNPGG-PGGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 401
Query: 376 IRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQSLI 414
I Q SGA + + +P P A + M + GT Q+ A+ LI
Sbjct: 402 ISQQSGARIELQRNPPPNADPNMKMFTIRGTPQQIDYARQLI 443
Score = 55 (24.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/80 (32%), Positives = 33/80 (41%)
Query: 246 GSYPSPVGPFHSMDRG--MGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPT 303
G P P GP G MGP P A ++ G P P+ P PY + G+
Sbjct: 464 GVVPGPHGPPGPPGPGAPMGPYNP----APYNPG-PPGPAPHGP--PAPYAPQGWGNAYP 516
Query: 304 FDRPPSPRSWTPQGVGGGDP 323
+PP+P P G G DP
Sbjct: 517 HWQPPNPPD--P-GKPGTDP 533
>WB|WBGene00013347 [details] [associations]
symbol:Y59A8B.10 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 eggNOG:NOG258094
KO:K14944 EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10
CTD:180183 HSSP:P51513 RefSeq:NP_001256769.1
ProteinModelPortal:Q9GRY9 SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9
MINT:MINT-1109012 STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9
EnsemblMetazoa:Y59A8B.10a UCSC:Y59A8B.10 WormBase:Y59A8B.10a
HOGENOM:HOG000017831 InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344
ArrayExpress:Q9GRY9 Uniprot:Q9GRY9
Length = 413
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 45/194 (23%), Positives = 91/194 (46%)
Query: 30 SSGPGHETV--GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA- 86
S GP ++ GG + + K+L + VG++IGKGG +R +N+ ++++
Sbjct: 22 SDGPANKKAHFGGEEEG--GDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSK 79
Query: 87 --DILPDSEERIVVISARENSEMRHSPA-QDAVMRVHSRIAEIG----FE---PGQAVVA 136
+ P + ERI ++ R N+ M + QD ++ + A+ G F+ +
Sbjct: 80 NSETYPGTSERICLVKGRLNNIMAVIESIQD---KIREKCADQGGSDAFDHKNTSRGAEI 136
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
++++ + G ++G+ G + ++R G I+V+PK + + + +V V H
Sbjct: 137 KIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVA---HDEA 193
Query: 197 DALFHITSRLRETI 210
AL SR+ E +
Sbjct: 194 SALLQAASRVLEKV 207
>UNIPROTKB|Q9GRY9 [details] [associations]
symbol:Y59A8B.10 "Protein Y59A8B.10, isoform a"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00650000093048 eggNOG:NOG258094 KO:K14944
EMBL:AL132898 GeneID:180183 KEGG:cel:CELE_Y59A8B.10 CTD:180183
HSSP:P51513 RefSeq:NP_001256769.1 ProteinModelPortal:Q9GRY9
SMR:Q9GRY9 DIP:DIP-24651N IntAct:Q9GRY9 MINT:MINT-1109012
STRING:Q9GRY9 PaxDb:Q9GRY9 PRIDE:Q9GRY9 EnsemblMetazoa:Y59A8B.10a
UCSC:Y59A8B.10 WormBase:Y59A8B.10a HOGENOM:HOG000017831
InParanoid:Q9GRY9 OMA:LAKYNIM NextBio:908344 ArrayExpress:Q9GRY9
Uniprot:Q9GRY9
Length = 413
Score = 139 (54.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 45/194 (23%), Positives = 91/194 (46%)
Query: 30 SSGPGHETV--GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA- 86
S GP ++ GG + + K+L + VG++IGKGG +R +N+ ++++
Sbjct: 22 SDGPANKKAHFGGEEEG--GDHLSIKILIPSNAVGAIIGKGGEAMRNLKNDNNCRVQMSK 79
Query: 87 --DILPDSEERIVVISARENSEMRHSPA-QDAVMRVHSRIAEIG----FE---PGQAVVA 136
+ P + ERI ++ R N+ M + QD ++ + A+ G F+ +
Sbjct: 80 NSETYPGTSERICLVKGRLNNIMAVIESIQD---KIREKCADQGGSDAFDHKNTSRGAEI 136
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
++++ + G ++G+ G + ++R G I+V+PK + + + +V V H
Sbjct: 137 KIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGSVEAKTSLERVVTVA---HDEA 193
Query: 197 DALFHITSRLRETI 210
AL SR+ E +
Sbjct: 194 SALLQAASRVLEKV 207
>RGD|1591892 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 RGD:1591892
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 124 (48.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVM 117
VG +IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIV 163
Query: 118 RVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 164 E-KGRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQD 219
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 220 GPQNTGA--DKPLRITGDPYKVQQAKEMVLELIRD 252
Score = 62 (26.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 331
Query: 412 SLI 414
+I
Sbjct: 332 EII 334
Score = 57 (25.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 436
Query: 413 LI 414
LI
Sbjct: 437 LI 438
Score = 52 (23.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 449 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 495
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 474 TPMGPYNPAPYNPGPPGPAPH 494
>UNIPROTKB|Q32PX7 [details] [associations]
symbol:Fubp1 "Far upstream element-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0010628 "positive regulation
of gene expression" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1591892 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0003723 CTD:8880 eggNOG:NOG300923 HOVERGEN:HBG000625
KO:K13210 InterPro:IPR015096 Pfam:PF09005 EMBL:BC107942
IPI:IPI00373591 RefSeq:NP_001032742.1 UniGene:Rn.177078
ProteinModelPortal:Q32PX7 SMR:Q32PX7 STRING:Q32PX7
PhosphoSite:Q32PX7 PRIDE:Q32PX7 GeneID:654496 KEGG:rno:654496
NextBio:714902 Genevestigator:Q32PX7 Uniprot:Q32PX7
Length = 639
Score = 124 (48.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVM 117
VG +IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIV 163
Query: 118 RVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 164 E-KGRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQD 219
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 220 GPQNTGA--DKPLRITGDPYKVQQAKEMVLELIRD 252
Score = 62 (26.9 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 273 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 331
Query: 412 SLI 414
+I
Sbjct: 332 EII 334
Score = 57 (25.1 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 377 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 436
Query: 413 LI 414
LI
Sbjct: 437 LI 438
Score = 52 (23.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 449 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 495
Score = 41 (19.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 474 TPMGPYNPAPYNPGPPGPAPH 494
>MGI|MGI:1196294 [details] [associations]
symbol:Fubp1 "far upstream element (FUSE) binding protein 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1196294 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625
InterPro:IPR015096 Pfam:PF09005 EMBL:BC014763 EMBL:AK029458
IPI:IPI00467635 IPI:IPI00874931 UniGene:Mm.278922 PDB:1X4M PDB:1X4N
PDBsum:1X4M PDBsum:1X4N ProteinModelPortal:Q91WJ8 SMR:Q91WJ8
IntAct:Q91WJ8 STRING:Q91WJ8 PhosphoSite:Q91WJ8
REPRODUCTION-2DPAGE:Q91WJ8 PaxDb:Q91WJ8 PRIDE:Q91WJ8
UCSC:uc008rsv.1 InParanoid:Q91WJ8 EvolutionaryTrace:Q91WJ8
CleanEx:MM_FUBP1 Genevestigator:Q91WJ8
GermOnline:ENSMUSG00000028034 Uniprot:Q91WJ8
Length = 651
Score = 124 (48.7 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVM 117
VG +IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIV 164
Query: 118 RVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 165 E-KGRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQD 220
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 221 GPQNTGA--DKPLRITGDPYKVQQAKEMVLELIRD 253
Score = 62 (26.9 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 274 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 332
Query: 412 SLI 414
+I
Sbjct: 333 EII 335
Score = 56 (24.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + P P A + + + GT Q+ A+
Sbjct: 378 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQ 437
Query: 413 LI 414
LI
Sbjct: 438 LI 439
Score = 52 (23.4 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 450 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 496
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 475 TPMGPYNPAPYNPGPPGPAPH 495
>UNIPROTKB|F1S9S9 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:CU695021
Ensembl:ENSSSCT00000004169 Uniprot:F1S9S9
Length = 708
Score = 124 (48.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVM 117
VG +IG+GG + Q E+G I+IA PDS ER +++ S D ++
Sbjct: 152 VGFIIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDQIV 208
Query: 118 RVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
R A GF PG AV +++ + + G ++G+GG + +++ G + V +D
Sbjct: 209 E-KGRPAP-GFHHGDGPGNAV-QEIMIPASKAGLVIGKGGETIKQLQERAGVKM-VMIQD 264
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 265 GPQNTGA--DKPLRITGDPYKVQQAKEMVLELIRD 297
Score = 62 (26.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 318 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 376
Query: 412 SLI 414
+I
Sbjct: 377 EII 379
Score = 57 (25.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 422 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 481
Query: 413 LI 414
LI
Sbjct: 482 LI 483
Score = 52 (23.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 278 MDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTPQGVGGGDPRG 325
+ P VP +P P+G P GP T P +P + P G G P G
Sbjct: 494 LGPPVPHGPHGVPGPHGPPGPP-GPGTPMGPYNPAPYNP-GPPGPAPHG 540
Score = 41 (19.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 250 SPVGPFHSMDRGMGPSQPFDH 270
+P+GP++ GP P H
Sbjct: 519 TPMGPYNPAPYNPGPPGPAPH 539
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 92 (37.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 109 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
H + + + +A+ EP + + V+ +I
Sbjct: 113 HGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 147
Score = 79 (32.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 189
G V + V +G +LG+GG + E + TGA I++ K + P G+ + ++ +
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-IT 475
Query: 190 GNYHSVQDALFHITSRL 206
G + Q A + IT R+
Sbjct: 476 GTPAATQAAQYLITQRI 492
Score = 73 (30.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 410 AQSLI 414
AQ LI
Sbjct: 484 AQYLI 488
Score = 69 (29.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT--EGVVMVSGTSDQMRAA 410
+++++P + G+ + + I + SGA V ++ G E VV VSG +Q R A
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233
Query: 411 QSLI 414
LI
Sbjct: 234 VELI 237
Score = 57 (25.1 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
+++V + G ++G+GG V + +GA +++ Q P + + +V V G +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNR 231
Query: 197 DALFHITSRLRE 208
A+ I +++E
Sbjct: 232 KAVELIIQKIQE 243
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 92 (37.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 112
Query: 109 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
H + + + +A+ EP + + V+ +I
Sbjct: 113 HGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 147
Score = 79 (32.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 189
G V + V +G +LG+GG + E + TGA I++ K + P G+ + ++ +
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-IT 475
Query: 190 GNYHSVQDALFHITSRL 206
G + Q A + IT R+
Sbjct: 476 GTPAATQAAQYLITQRI 492
Score = 73 (30.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 410 AQSLI 414
AQ LI
Sbjct: 484 AQYLI 488
Score = 69 (29.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT--EGVVMVSGTSDQMRAA 410
+++++P + G+ + + I + SGA V ++ G E VV VSG +Q R A
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233
Query: 411 QSLI 414
LI
Sbjct: 234 VELI 237
Score = 57 (25.1 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
+++V + G ++G+GG V + +GA +++ Q P + + +V V G +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNR 231
Query: 197 DALFHITSRLRE 208
A+ I +++E
Sbjct: 232 KAVELIIQKIQE 243
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 92 (37.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 109 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
H + + + +A+ EP + + V+ +I
Sbjct: 113 HGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 147
Score = 79 (32.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 189
G V + V +G +LG+GG + E + TGA I++ K + P G+ + ++ +
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-IT 475
Query: 190 GNYHSVQDALFHITSRL 206
G + Q A + IT R+
Sbjct: 476 GTPAATQAAQYLITQRI 492
Score = 73 (30.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 410 AQSLI 414
AQ LI
Sbjct: 484 AQYLI 488
Score = 69 (29.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT--EGVVMVSGTSDQMRAA 410
+++++P + G+ + + I + SGA V ++ G E VV VSG +Q R A
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233
Query: 411 QSLI 414
LI
Sbjct: 234 VELI 237
Score = 57 (25.1 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
+++V + G ++G+GG V + +GA +++ Q P + + +V V G +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNR 231
Query: 197 DALFHITSRLRE 208
A+ I +++E
Sbjct: 232 KAVELIIQKIQE 243
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 92 (37.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 28/97 (28%), Positives = 46/97 (47%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 109 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
H + + + +A+ EP + + V+ +I
Sbjct: 113 HGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 147
Score = 79 (32.9 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 189
G V + V +G +LG+GG + E + TGA I++ K + P G+ + ++ +
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-IT 475
Query: 190 GNYHSVQDALFHITSRL 206
G + Q A + IT R+
Sbjct: 476 GTPAATQAAQYLITQRI 492
Score = 73 (30.8 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 424 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 483
Query: 410 AQSLI 414
AQ LI
Sbjct: 484 AQYLI 488
Score = 69 (29.3 bits), Expect = 0.00078, Sum P(2) = 0.00078
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT--EGVVMVSGTSDQMRAA 410
+++++P + G+ + + I + SGA V ++ G E VV VSG +Q R A
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 233
Query: 411 QSLI 414
LI
Sbjct: 234 VELI 237
Score = 57 (25.1 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
+++V + G ++G+GG V + +GA +++ Q P + + +V V G +
Sbjct: 175 KIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNR 231
Query: 197 DALFHITSRLRE 208
A+ I +++E
Sbjct: 232 KAVELIIQKIQE 243
>RGD|621828 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030425 "dendrite" evidence=IDA] [GO:0043025
"neuronal cell body" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621828 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0043025 GO:GO:0030425
GO:GO:0006397 GO:GO:0006351 GO:GO:0003730 GO:GO:0051028
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:AF308818 IPI:IPI00200920 RefSeq:NP_598286.1
UniGene:Rn.92643 ProteinModelPortal:Q99PF5 SMR:Q99PF5
PhosphoSite:Q99PF5 REPRODUCTION-2DPAGE:Q99PF5 PRIDE:Q99PF5
GeneID:171137 KEGG:rno:171137 NextBio:621918 Genevestigator:Q99PF5
Uniprot:Q99PF5
Length = 721
Score = 108 (43.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 213
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 214 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 270
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 271 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 89 (36.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 50/203 (24%), Positives = 84/203 (41%)
Query: 26 SRGYSSGPG--HETV-GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
SRG PG H+ GG+N E ++ K G +IGKGG ++ Q G
Sbjct: 214 SRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIKQLQERAG-- 265
Query: 83 IKIADILPDSEERIVVISARENSE-MRHSPAQDAVMRVHSRIAEIGF----EPGQAVVAR 137
+K+ I S+ V R + + A + VM + + GF E G V
Sbjct: 266 VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRVGGG 325
Query: 138 L--LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 195
+ V +G ++GR G ++ +++ G I+ F +D G+ ++I ++G
Sbjct: 326 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-FKQDD----GTGPEKIAHIMGP---- 376
Query: 196 QDALFHITSRLRETIFPMKRPGP 218
D H +R+ + R GP
Sbjct: 377 PDRCEH-AARIINDLLQSLRSGP 398
Score = 88 (36.0 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 35/128 (27%), Positives = 54/128 (42%)
Query: 5 GNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGSL 64
G P PP A P G PG RG G GG E+ F + H K G +
Sbjct: 397 GPPGPPGA-P----GMPPGGRGRGRGQG-NWGPPGG--------EMTFSIPTH--KCGLV 440
Query: 65 IGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVM-RVHSRI 123
IG+GG V+ +TGA ++I+ LP + + + S + A+ + ++ +
Sbjct: 441 IGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKIEGPL 500
Query: 124 AEIGFEPG 131
+G PG
Sbjct: 501 CPVGPGPG 508
Score = 78 (32.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFD--RPP 308
PVGP GP PF H F+ G P PP++ P P+ G G T+ +PP
Sbjct: 502 PVGPGPGGPGPAGPMGPF-HPGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPEWQPP 558
Query: 309 SPRSWTPQGVGGGDP 323
+P DP
Sbjct: 559 APHDPNKAAAAATDP 573
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 119 (46.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 38/152 (25%), Positives = 71/152 (46%)
Query: 59 DK-VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAR-ENSEMRHSPAQDAV 116
DK VG +IG+GG + Q E+ I+IA +R ++ E+ E V
Sbjct: 92 DKMVGFIIGRGGEQITRIQLESNCKIQIAADSGGMMDRPCTLTGTPESIEQAKRLLGQIV 151
Query: 117 MRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 176
R + G + V +L+ + ++G ++G+GG + +++ TG + + D P
Sbjct: 152 DRCRNGPGFHSQMDGSSAVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMP 211
Query: 177 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
GS D+ +++ G+ + VQ A + +RE
Sbjct: 212 T-GS--DKPLRISGDPYKVQQARELVVEIIRE 240
Score = 118 (46.6 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 50/189 (26%), Positives = 86/189 (45%)
Query: 31 SGPG-HETVGGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS-IKIADI 88
+GPG H + G + V ++L KVG +IGKGG ++ Q TG I I D
Sbjct: 156 NGPGFHSQMDGSS-------AVQEILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDD 208
Query: 89 -LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVV-ARL------LV 140
+P ++ + IS + A++ V+ + + F G++ +RL V
Sbjct: 209 PMPTGSDKPLRISG---DPYKVQQARELVVEIIREKDQGDFRSGRSDFGSRLGSSIDVAV 265
Query: 141 HSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALF 200
+G ++GR G ++ +++ G I+ P D SP D + QV+G Q A+
Sbjct: 266 PRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGI----SP-DRVAQVMGQPERCQHAV- 319
Query: 201 HITSRLRET 209
H+ + L +T
Sbjct: 320 HLINELVQT 328
Score = 62 (26.9 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGV--VMVSGTSDQMRA 409
+ IP V G+ + +I Q SGA+V + +P P V + G+ QM
Sbjct: 362 VTYTIPADKCGLVIGKGGETIKNINQQSGAHVELQRNPPPNTDPNVRTFSIRGSPQQMEM 421
Query: 410 AQSLI 414
A+ LI
Sbjct: 422 ARQLI 426
Score = 59 (25.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRA 409
++I+V +P+ + V G N + I+ +G + P G + + V V G ++ +
Sbjct: 259 SSIDVAVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGISPDRVAQVMGQPERCQH 317
Query: 410 AQSLIHAFI 418
A LI+ +
Sbjct: 318 AVHLINELV 326
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 133 (51.9 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 38/125 (30%), Positives = 67/125 (53%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAR-----EN 104
+ +LL +VGS+IGK G ++ + E+GA I I+D ERIV I+ +
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINISD--GSCPERIVTITGTLGVIGKA 129
Query: 105 SEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 164
M + ++ ++ + + + P + R++V + Q G L+G+GG + ++R ATG
Sbjct: 130 FNMVCNKFEEDMLLLPNSV------PKPPITMRVIVPATQCGSLIGKGGSKIKDIREATG 183
Query: 165 ASIRV 169
ASI+V
Sbjct: 184 ASIQV 188
Score = 42 (19.8 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 381 GANVVVNDPKP-GATEGVVMVSGTSDQMRAAQS 412
GA + P P G T G SG S Q A S
Sbjct: 394 GAPFMKGGPTPPGTTSGKATSSGASAQGAATSS 426
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 136 (52.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 85/333 (25%), Positives = 122/333 (36%)
Query: 60 KVGSLIGKGGSIVRTFQNETGASIKI---ADILPDSEER-------IVVISAREN----- 104
KVG LIGKGG +R Q +GA I+I ++ P S R + I + E
Sbjct: 186 KVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVACIESAEKLISAV 245
Query: 105 -SEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
+E + V R H IG P Q + V + ++G ++GRGG + M+ +
Sbjct: 246 IAEAEAGGSPALVARGHPSTHAIGI-PEQIEIK---VPNDKVGLIIGRGGETIKNMQTRS 301
Query: 164 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 223
GA ++ P+ A G + V++ G+ + A I + + P G N +
Sbjct: 302 GARTQLIPQ-HAEGDGLK-ERTVRISGDKMQIDIATDMIKDVMNQNARPSSYSGGYNQPA 359
Query: 224 YLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPFHSMDR-----GMGPSQPFDHQAAFSHGM 278
Y Y P GP+ S G G P +G
Sbjct: 360 YRPQGPGGPPQWGSRGPHAPHPYDY-HPRGPYSSQGSYYNSPGFGGYPPQHMPPRGGYGT 418
Query: 279 D-PMVPPNSDRIPFPYGSE-RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 336
D PP S + YG + GP PP P P GG P S G+ +
Sbjct: 419 DWDQRPPYSGPYNY-YGRQGAQSAGPV---PP-PSGPVPSPAFGGPPLS-QVSYGYGQSH 472
Query: 337 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 369
P E G HAA + T + Q Y Y N
Sbjct: 473 GP-EYG-HAAPYSQTGYQQTYGQTYEQPKYDSN 503
>UNIPROTKB|Q92945 [details] [associations]
symbol:KHSRP "Far upstream element-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005654 GO:GO:0006355 GO:GO:0003677
GO:GO:0006397 GO:GO:0006351 GO:GO:0003723 GO:GO:0051028
GO:GO:0000375 eggNOG:NOG300923 HOGENOM:HOG000231552
HOVERGEN:HBG000625 KO:K13210 InterPro:IPR015096 Pfam:PF09005
CTD:8570 EMBL:U94832 EMBL:AC011491 EMBL:AC011539 EMBL:BC085004
EMBL:AF093747 EMBL:AF093745 EMBL:AF093748 EMBL:U69126 EMBL:AB209662
IPI:IPI00479786 IPI:IPI00855957 RefSeq:NP_003676.2
UniGene:Hs.727344 PDB:2HH2 PDB:2HH3 PDB:2JVZ PDB:2OPU PDB:2OPV
PDB:4B8T PDBsum:2HH2 PDBsum:2HH3 PDBsum:2JVZ PDBsum:2OPU
PDBsum:2OPV PDBsum:4B8T ProteinModelPortal:Q92945 SMR:Q92945
DIP:DIP-48484N IntAct:Q92945 STRING:Q92945 PhosphoSite:Q92945
DMDM:160380711 REPRODUCTION-2DPAGE:Q92945 PaxDb:Q92945 PRIDE:Q92945
Ensembl:ENST00000398148 GeneID:8570 KEGG:hsa:8570 UCSC:uc002mer.4
GeneCards:GC19M006413 H-InvDB:HIX0040083 HGNC:HGNC:6316
HPA:HPA034739 MIM:603445 neXtProt:NX_Q92945 PharmGKB:PA30097
InParanoid:Q92945 OMA:QASGNCH PhylomeDB:Q92945 ChEMBL:CHEMBL1795105
ChiTaRS:KHSRP EvolutionaryTrace:Q92945 GenomeRNAi:8570
NextBio:32149 PMAP-CutDB:Q92945 ArrayExpress:Q92945 Bgee:Q92945
CleanEx:HS_KHSRP Genevestigator:Q92945 GermOnline:ENSG00000088247
Uniprot:Q92945
Length = 711
Score = 108 (43.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 212
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 213 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 269
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 270 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 91 (37.1 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 50/206 (24%), Positives = 87/206 (42%)
Query: 26 SRGYSSGPG--HETV-GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
SRG PG H+ GG+N E ++ K G +IGKGG ++ Q G
Sbjct: 213 SRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIKQLQERAG-- 264
Query: 83 IKIADILPDSEERIVVISARENSE-MRHSPAQDAVMRVHSRIAEIGF----EPGQAVVAR 137
+K+ I S+ V R + + A + VM + + GF E G +
Sbjct: 265 VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGG 324
Query: 138 L--LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 195
+ V +G ++GR G ++ +++ G I+ F +D G+ ++I ++G
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-FKQDD----GTGPEKIAHIMGPPDRC 379
Query: 196 QDALFHITSRLRETIFPMKRPGPNNG 221
+ A I + L +++ PGP G
Sbjct: 380 EHAA-RIINDLLQSL-RSGPPGPPGG 403
Score = 74 (31.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 501 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 557
Query: 309 SPRSWTPQGVGGGDP 323
+P + DP
Sbjct: 558 APHDPSKAAAAAADP 572
Score = 59 (25.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 514 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 553
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 109 (43.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 37/145 (25%), Positives = 73/145 (50%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMR-V 119
VG +IGKGGS +R Q +G +++ D PD + ++ N + P Q AV R +
Sbjct: 65 VGLVIGKGGSEIRLIQQTSGCRVQM-D--PDHQS----VNGFRNCTIEGPPDQVAVARQM 117
Query: 120 HSRIA---EIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173
+++ + G +PG A V +L+ + +IG ++G+GG + ++ +G ++
Sbjct: 118 ITQVINRNQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQE 177
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDA 198
G P +++IG+ +++ A
Sbjct: 178 TTTATGQPKP--LRMIGSPAAIETA 200
Score = 70 (29.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 16/74 (21%), Positives = 34/74 (45%)
Query: 342 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVMV 400
G + A EV++P+L + G+ + + +G + D P + + + ++
Sbjct: 231 GGYGAQEAQAKGEVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVI 290
Query: 401 SGTSDQM-RAAQSL 413
GT DQ+ RA + +
Sbjct: 291 MGTRDQIYRATERI 304
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 114 (45.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 32/145 (22%), Positives = 69/145 (47%)
Query: 60 KVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMR 118
+ G +IGK G V ++ETG ++ ++P +R++ ++ + R ++ ++
Sbjct: 237 EAGVIIGKAGKNVADLRDETGVKAGVSKVVPGVHDRVLTVTGALSGTARAYALVAKGLLE 296
Query: 119 VHSRIAEIGFEPGQAV-VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 177
++ G RLL+ Q+G ++GR G + ++ A+G + V K+ P+
Sbjct: 297 GAPQMGMGGIVSNNGTHPIRLLISHNQMGTIIGRQGLKIKHIQDASGVRM-VAQKEMLPQ 355
Query: 178 CGSPHDEIVQVIGNYHSVQDALFHI 202
+ IV+V G ++ A++ I
Sbjct: 356 ST---ERIVEVQGTPEGIEKAIWEI 377
Score = 64 (27.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/95 (22%), Positives = 40/95 (42%)
Query: 327 DASSGFTPRNRPVESGNHAAILTST-----TIEVVIPQLYMAHVYGENNSNLSHIRQISG 381
D S G+ R+ P S ++T T + IP + + G + ++ IR+ SG
Sbjct: 433 DQSGGYGRRSNPDTSNRGYPLVTEDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSG 492
Query: 382 ANV-VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
A + + P E + + G++ A L++
Sbjct: 493 ARISIAKAPHDETGERMFTIMGSAQANEKALYLLY 527
>UNIPROTKB|F1MHR6 [details] [associations]
symbol:LOC505564 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:DAAA02019565 EMBL:DAAA02019566
IPI:IPI00701919 Ensembl:ENSBTAT00000027991 Uniprot:F1MHR6
Length = 708
Score = 108 (43.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 117 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 173
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 174 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 230
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 231 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 266
Score = 91 (37.1 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 50/206 (24%), Positives = 87/206 (42%)
Query: 26 SRGYSSGPG--HETV-GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
SRG PG H+ GG+N E ++ K G +IGKGG ++ Q G
Sbjct: 174 SRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIKQLQERAG-- 225
Query: 83 IKIADILPDSEERIVVISARENSE-MRHSPAQDAVMRVHSRIAEIGF----EPGQAVVAR 137
+K+ I S+ V R + + A + VM + + GF E G +
Sbjct: 226 VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGG 285
Query: 138 L--LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 195
+ V +G ++GR G ++ +++ G I+ F +D G+ ++I ++G
Sbjct: 286 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-FKQDD----GTGPEKIAHIMGPPDRC 340
Query: 196 QDALFHITSRLRETIFPMKRPGPNNG 221
+ A I + L +++ PGP G
Sbjct: 341 EHAA-RIINDLLQSL-RSGPPGPPGG 364
Score = 73 (30.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 462 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 518
Query: 309 SPRSWTPQGVGGGDP 323
+P DP
Sbjct: 519 APHDPNKAAAAAADP 533
Score = 59 (25.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 475 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 514
>UNIPROTKB|F1SBT6 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:CU929921
Ensembl:ENSSSCT00000014785 Uniprot:F1SBT6
Length = 747
Score = 108 (43.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 212
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 213 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 269
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 270 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 305
Score = 91 (37.1 bits), Expect = 0.0010, Sum P(2) = 0.0010
Identities = 50/206 (24%), Positives = 87/206 (42%)
Query: 26 SRGYSSGPG--HETV-GGRNRMFYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82
SRG PG H+ GG+N E ++ K G +IGKGG ++ Q G
Sbjct: 213 SRGRGGPPGQFHDNANGGQNGTVQE------IMIPAGKAGLVIGKGGETIKQLQERAG-- 264
Query: 83 IKIADILPDSEERIVVISARENSE-MRHSPAQDAVMRVHSRIAEIGF----EPGQAVVAR 137
+K+ I S+ V R + + A + VM + + GF E G +
Sbjct: 265 VKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGG 324
Query: 138 L--LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 195
+ V +G ++GR G ++ +++ G I+ F +D G+ ++I ++G
Sbjct: 325 IDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-FKQDD----GTGPEKIAHIMGPPDRC 379
Query: 196 QDALFHITSRLRETIFPMKRPGPNNG 221
+ A I + L +++ PGP G
Sbjct: 380 EHAA-RIINDLLQSL-RSGPPGPPGG 403
Score = 73 (30.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 501 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 557
Query: 309 SPRSWTPQGVGGGDP 323
+P DP
Sbjct: 558 APHDPNKAAAAAADP 572
Score = 59 (25.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 514 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 553
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 86 (35.3 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA------DILPDSEERIVVISAR-ENS 105
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Query: 106 EMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
H + + + +A+ EP + + V+ +I
Sbjct: 113 NAVHGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 150
Score = 79 (32.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 189
G V + V +G +LG+GG + E + TGA I++ K + P G+ + ++ +
Sbjct: 422 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP--GTRNRKVT-IT 478
Query: 190 GNYHSVQDALFHITSRL 206
G + Q A + IT R+
Sbjct: 479 GTPAATQAAQYLITQRI 495
Score = 73 (30.8 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++GT +A
Sbjct: 427 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTITGTPAATQA 486
Query: 410 AQSLI 414
AQ LI
Sbjct: 487 AQYLI 491
Score = 57 (25.1 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
+++V + G ++G+GG V + +GA +++ Q P + + +V V G +
Sbjct: 178 KIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNR 234
Query: 197 DALFHITSRLRE 208
A+ I +++E
Sbjct: 235 KAVELIIQKIQE 246
>MGI|MGI:1336214 [details] [associations]
symbol:Khsrp "KH-type splicing regulatory protein"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0030425 "dendrite"
evidence=ISO] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0051028 "mRNA transport" evidence=IEA] Reactome:REACT_78136
Reactome:REACT_88316 InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS00178 PROSITE:PS50084 SMART:SM00322
MGI:MGI:1336214 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0008380 GO:GO:0003677 GO:GO:0006397 GO:GO:0006351
GO:GO:0003723 GO:GO:0051028 GO:GO:0010494 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8570 OMA:QASGNCH EMBL:AK156541
EMBL:CT571247 EMBL:BC064454 EMBL:BC108414 IPI:IPI00462934
RefSeq:NP_034743.3 UniGene:Mm.34296 HSSP:Q91WJ8
ProteinModelPortal:Q3U0V1 SMR:Q3U0V1 IntAct:Q3U0V1 STRING:Q3U0V1
PhosphoSite:Q3U0V1 PaxDb:Q3U0V1 PRIDE:Q3U0V1 DNASU:16549
Ensembl:ENSMUST00000007814 GeneID:16549 KEGG:mmu:16549
UCSC:uc008ddr.2 GeneTree:ENSGT00650000093048 InParanoid:Q3U0V1
OrthoDB:EOG451DQX NextBio:290019 Bgee:Q3U0V1 CleanEx:MM_KHSRP
Genevestigator:Q3U0V1 Uniprot:Q3U0V1
Length = 748
Score = 108 (43.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 213
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 214 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 270
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 271 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 306
Score = 71 (30.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 23/75 (30%), Positives = 31/75 (41%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 502 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 558
Query: 309 SPRSWTPQGVGGGDP 323
+P DP
Sbjct: 559 APHDPNKAAAAATDP 573
Score = 59 (25.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 515 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 554
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 102 (41.0 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 255 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 309
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 310 VTITGSPVSIALAQYLITACL-ET 332
Score = 95 (38.5 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 329 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 387
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 241 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 299
Query: 388 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
+ GA E V ++G+ + AQ LI A
Sbjct: 300 NQAEGAGERHVTITGSPVSIALAQYLITA 328
Score = 60 (26.2 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 79 TGASIKIA-DILPDSEERIVVIS 100
TGA +++A D+LP+S ER V +S
Sbjct: 152 TGAQVQVAGDLLPNSTERAVTVS 174
Score = 48 (22.0 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETG 80
V +L+ + GSLIGK G+ ++ + G
Sbjct: 68 VTLRLVIPASQCGSLIGKAGTKIKEIREVRG 98
>UNIPROTKB|F6Y140 [details] [associations]
symbol:KHSRP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 InterPro:IPR015096 Pfam:PF09005
OMA:QASGNCH GeneTree:ENSGT00650000093048 EMBL:AAEX03012495
Ensembl:ENSCAFT00000029641 Uniprot:F6Y140
Length = 602
Score = 108 (43.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS----EERIVVISARENSEMRHSPAQDAV 116
VG +IG+GG + Q ++G ++I+ PDS E + + A E+ + D V
Sbjct: 12 VGLIIGRGGEQINKIQQDSGCKVQIS---PDSGGLPERSVSLTGAPESVQKAKMMLDDIV 68
Query: 117 MRVHSRIAEIG-FEP----GQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170
R R G F GQ V +++ + + G ++G+GG + +++ G + +
Sbjct: 69 SR--GRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKM-IL 125
Query: 171 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+D + D+ +++IG+ + VQ A + LRE
Sbjct: 126 IQDGSQNTNV--DKPLRIIGDPYKVQQACEMVMDILRE 161
Score = 68 (29.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 251 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR--PP 308
PVGP GP PF+ F+ G P PP++ P P+ G G T+ + PP
Sbjct: 357 PVGPGPGGPGPAGPMGPFN-PGPFNQG-PPGAPPHAGGPP-PHQYPPQGWGNTYPQWQPP 413
Query: 309 SPRSWTPQGVGGGDP 323
+P + DP
Sbjct: 414 APHD-PNKAAAAADP 427
Score = 59 (25.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 324
PM P N P P+ PG P PP P + PQG G P+
Sbjct: 370 PMGPFN----PGPFNQGPPGAPPHAGGPP-PHQYPPQGWGNTYPQ 409
>UNIPROTKB|F8W1G6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021049
Ensembl:ENST00000546652 ArrayExpress:F8W1G6 Bgee:F8W1G6
Uniprot:F8W1G6
Length = 202
Score = 121 (47.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/113 (30%), Positives = 59/113 (52%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR- 108
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 11 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 68
Query: 109 HSPAQDAVMR-VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 160
+ D + + S + V RL+V + Q G L+G+GG + E+R
Sbjct: 69 FAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIR 121
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 319 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 13 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 65
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
RQ+S A + + +P G++ V ++G++ + AQ LI+A
Sbjct: 66 RQMSRAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 105
>UNIPROTKB|F8VRH0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022901
Ensembl:ENST00000553064 ArrayExpress:F8VRH0 Bgee:F8VRH0
Uniprot:F8VRH0
Length = 310
Score = 109 (43.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 325 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 384
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 104 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 162
Query: 385 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 163 KIANPVEGSTDRQVTITGSAASISLAQYLIN 193
Score = 56 (24.8 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 79 TGASIKIA-DILPDSEERIVVIS 100
TGA +++A D+LP+S ER + I+
Sbjct: 2 TGAQVQVAGDMLPNSTERAITIA 24
>ZFIN|ZDB-GENE-030131-4357 [details] [associations]
symbol:khsrp "KH-type splicing regulatory protein"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-030131-4357 GO:GO:0003723
InterPro:IPR015096 Pfam:PF09005 OMA:QASGNCH
GeneTree:ENSGT00650000093048 EMBL:AL929150 IPI:IPI00482681
Ensembl:ENSDART00000038330 ArrayExpress:F1QXP8 Bgee:F1QXP8
Uniprot:F1QXP8
Length = 666
Score = 129 (50.5 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 87/382 (22%), Positives = 144/382 (37%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVM 117
VG +IG+GG + Q ++G ++IA PDS +R V I+ + + D ++
Sbjct: 118 VGLIIGRGGEQINKIQQDSGCKVQIA---PDSGGLPDRSVSITGGPEAIQKAKMMLDDIV 174
Query: 118 RVHSRIAEIGFEP---GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPKD 173
R F G + +++ + + G ++G+GG + +++ G I +
Sbjct: 175 S-RGRGTPPSFHESTNGSGHMQEMVIPAGKAGLIIGKGGETIKQLQERAGVKMILIQDAS 233
Query: 174 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLXXXXXXXX 233
Q P P +++IG+ + VQ A + LRE PG + Y
Sbjct: 234 QGPNMDKP----LRIIGDPYKVQQAREMVQEILRER----DHPGFER-NEY---GSRMGG 281
Query: 234 XXXXXXXXXXXXGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS----DRI 289
G PV P HS+ +G S + G+ P+ D+I
Sbjct: 282 GGGGGGGGGGGGGGIEVPV-PRHSVGVVIGRSGEMIKKIQNDAGVRIQFKPDDGTGPDKI 340
Query: 290 PFPYGS-ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTP--RNRPVESGNHAA 346
G +R H + +S + GGG P G +G P R R G +
Sbjct: 341 AHIMGPPDRCEHAASIINELL-QSIRVREEGGGGPPG-PPGTGMPPGGRGRGRGPGGNWG 398
Query: 347 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGT 403
+ + IP V G N+ I Q +GA V ++ P P + + G+
Sbjct: 399 GPPGSEMTFSIPAHKCGLVIGRGGENVKAINQQTGAFVEISRQPPPNGDPNFKLFTIRGS 458
Query: 404 SDQMRAAQSLIHAFI---LCGV 422
Q+ A+ LI I LC V
Sbjct: 459 PQQIDHAKQLIEDKIEGPLCPV 480
>WB|WBGene00007534 [details] [associations]
symbol:C12D8.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0016246
GO:GO:0003723 EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 108 (43.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 27/117 (23%), Positives = 58/117 (49%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS-ARENSEMRHSPAQDAVMR 118
VG +IG+GGS ++ Q + G ++++ D P S R+V + +R N E + V R
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINEVVAR 140
Query: 119 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 175
+ + GF Q + + + + G ++G+ G + +++ +G + + +Q+
Sbjct: 141 SQNPRPQYGFPRAQTTID-IAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQS 196
Score = 65 (27.9 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVMVSGTSDQM-RAAQ 411
EVV+P+ + + G+ + + +G + D P E ++ GT DQ+ RA +
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATE 311
Query: 412 SL 413
+
Sbjct: 312 RI 313
Score = 63 (27.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 342 GNHAAILTS---TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGV 397
GN A + S +T + +P V G+ + I SGA+ ++ DP A E V
Sbjct: 328 GNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKV 387
Query: 398 VMVSGTSDQMRAAQSLI 414
++ G + A+ LI
Sbjct: 388 FVIKGGKRAIEHAKHLI 404
>UNIPROTKB|Q17936 [details] [associations]
symbol:C12D8.1 "Protein C12D8.1, isoform b" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0016246 GO:GO:0003723
EMBL:Z73969 KO:K13210 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 HOGENOM:HOG000018892
GeneID:179423 KEGG:cel:CELE_C12D8.1 UCSC:C12D8.1b CTD:179423
NextBio:905322 PIR:T19217 RefSeq:NP_505633.1
ProteinModelPortal:Q17936 SMR:Q17936 IntAct:Q17936
MINT:MINT-1038809 STRING:Q17936 PRIDE:Q17936
EnsemblMetazoa:C12D8.1b WormBase:C12D8.1b InParanoid:Q17936
OMA:PERCAVI ArrayExpress:Q17936 Uniprot:Q17936
Length = 611
Score = 108 (43.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 27/117 (23%), Positives = 58/117 (49%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS-ARENSEMRHSPAQDAVMR 118
VG +IG+GGS ++ Q + G ++++ D P S R+V + +R N E + V R
Sbjct: 81 VGIVIGRGGSEIQGIQAKAGCRVQMSPDADPSSGVRMVTLEGSRSNVETAKHLINEVVAR 140
Query: 119 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 175
+ + GF Q + + + + G ++G+ G + +++ +G + + +Q+
Sbjct: 141 SQNPRPQYGFPRAQTTID-IAIPPNRCGLIIGKSGDTIRQLQEKSGCKMILVQDNQS 196
Score = 65 (27.9 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 354 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVMVSGTSDQM-RAAQ 411
EVV+P+ + + G+ + + +G + D P E ++ GT DQ+ RA +
Sbjct: 252 EVVVPRSSVGIIIGKQGDTIKRLAMETGTKIQFKPDDDPSTPERCAVIMGTRDQIYRATE 311
Query: 412 SL 413
+
Sbjct: 312 RI 313
Score = 63 (27.2 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 342 GNHAAILTS---TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGV 397
GN A + S +T + +P V G+ + I SGA+ ++ DP A E V
Sbjct: 328 GNVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQINSESGAHCELSRDPTGNADEKV 387
Query: 398 VMVSGTSDQMRAAQSLI 414
++ G + A+ LI
Sbjct: 388 FVIKGGKRAIEHAKHLI 404
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 111 (44.1 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/106 (29%), Positives = 55/106 (51%)
Query: 66 GKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMR-HSPAQDAVMR-VHSRI 123
GK G V+ + E+GA I I++ + ERI+ ++ N+ + + D + + S +
Sbjct: 22 GKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSM 79
Query: 124 AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 80 TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 125
Score = 105 (42.0 bits), Expect = 0.00073, P = 0.00073
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVIS 100
V +L+ + GSLIGKGG ++ + TGA +++A D+LP+S ER + I+
Sbjct: 90 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIA 141
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 94 (38.1 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 44 MFYEEEVVF--KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVV 98
M EE+ + K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +
Sbjct: 1 MLSEEDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCL 60
Query: 99 ISAR-ENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQI 145
I E H + + + +A+ EP + + V+ +I
Sbjct: 61 IQGTVEALNAVHGFIAEKIREMPQNVAKT--EPVSILQPQTTVNPDRI 106
Score = 68 (29.0 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT--EGVVMVSGTSDQMRAA 410
+++++P + G+ + + + + SGA V ++ G E VV VSG +Q R A
Sbjct: 133 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 192
Query: 411 QSLI 414
LI
Sbjct: 193 VELI 196
>UNIPROTKB|F1MX51 [details] [associations]
symbol:FUBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GO:GO:0010628 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 OMA:NGQEGDQ EMBL:DAAA02008247
EMBL:DAAA02008246 IPI:IPI00698543 Ensembl:ENSBTAT00000011751
Uniprot:F1MX51
Length = 602
Score = 108 (43.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 53/210 (25%), Positives = 92/210 (43%)
Query: 4 QGNPYPPAAEPFHQRGYAPGYHSRGYSSGPGHETVGGRNRMFYEEEVVFKLLCHLDKVGS 63
Q P +P ++ AP S G P H+ + R EE +K+ + VG
Sbjct: 24 QKRPLEDGDQPDAKK-VAPQNDSFGTQLPPMHQ----QQRSVMTEE--YKVPDGM--VGF 74
Query: 64 LIGKGGSIVRTFQNETGASIKIADILPDS---EERIVVISARENSEMRHSPAQDAVMRVH 120
+IG+GG + Q E+G I+IA PDS ER +++ S D V +
Sbjct: 75 IIGRGGEQISRIQQESGCKIQIA---PDSGGLPERSCMLTGTPESVQSAKRLLDIVEK-- 129
Query: 121 SRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
R A GF G + +++ + + G L+G+GG ++ G + V +D
Sbjct: 130 GRPAP-GFHHGDGPKCSSEIMIPASKAG-LVGKGGETINNSEERAGVKM-VMIQDGPQNT 186
Query: 179 GSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
G+ D+ +++ G+ + VQ A + +R+
Sbjct: 187 GA--DKPLRITGDPYKVQQAKEMVLELIRD 214
Score = 62 (26.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT-EGVVMVSGTSDQMRAAQ 411
I+V IP+ + V G N + I+ +G + P G T + + ++G D+ + A
Sbjct: 235 IDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFK-PDDGTTPDRIAQITGPPDRCQHAA 293
Query: 412 SLI 414
+I
Sbjct: 294 EII 296
Score = 57 (25.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 356 VIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVM--VSGTSDQMRAAQS 412
++P + G+ + I Q SGA + + +P P A + + + GT Q+ A+
Sbjct: 339 IVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQ 398
Query: 413 LI 414
LI
Sbjct: 399 LI 400
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 111 (44.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 42/156 (26%), Positives = 73/156 (46%)
Query: 60 KVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISARENSEMRHSPAQDAV 116
+VG +IGKGG ++ Q ++GA I++ D P+ R V ++ + + S A+ +
Sbjct: 144 RVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPD---QISKAEQLI 200
Query: 117 MRVHSRIAEIGFEPG-----------QAVVARLL--VHSQQIGCLLGRGGHIVSEMRRAT 163
V AE G G QA + + + + ++G ++G+GG + M+ T
Sbjct: 201 TDVLQE-AEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKT 259
Query: 164 GASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDA 198
GA I+V P P G P E +Q+ G ++ A
Sbjct: 260 GARIQVIPLHLPP--GDPTPERTLQIDGITEQIEHA 293
Score = 58 (25.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 257 SMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSE--RPGHGPTFDRPPSPRSWT 314
S G G + +D Q + +P ++ + P ++ + G+G T +PP+ S
Sbjct: 443 SQQSGYGQAAGYDQQGGYGSTTNPSQEEDASQAAPPSSAQSGQAGYGTTGQQPPAQGSTG 502
Query: 315 PQGVG 319
G G
Sbjct: 503 QAGYG 507
>UNIPROTKB|F1NP95 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02003296
EMBL:AADN02003297 EMBL:AADN02003298 EMBL:AADN02003299
EMBL:AADN02003300 EMBL:AADN02003301 EMBL:AADN02003302
EMBL:AADN02003303 EMBL:AADN02003304 EMBL:AADN02003305
EMBL:AADN02003306 EMBL:AADN02003307 EMBL:AADN02003308
EMBL:AADN02003309 EMBL:AADN02003310 EMBL:AADN02003311
EMBL:AADN02003312 EMBL:AADN02003313 EMBL:AADN02003314
EMBL:AADN02003315 IPI:IPI00814536 Ensembl:ENSGALT00000016012
ArrayExpress:F1NP95 Uniprot:F1NP95
Length = 345
Score = 119 (46.9 bits), Expect = 0.00024, P = 0.00024
Identities = 42/170 (24%), Positives = 77/170 (45%)
Query: 53 KLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISAR-ENSEMR 108
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I E
Sbjct: 36 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTVEALNAV 95
Query: 109 HSPAQDAVMRVHSRIAE---IGFEPGQAVV-------ARLLVHSQQIGCLLGRGGHIVSE 158
H + + + +A+ + Q V +++V + G ++G+GG V
Sbjct: 96 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAGLIIGKGGATVKA 155
Query: 159 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 156 IMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQE 202
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 110 (43.8 bits), Expect = 0.00042, P = 0.00042
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 266 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 322
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 16 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 73
Query: 323 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 376
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 74 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 132
Query: 377 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 415
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 133 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 171
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 102 (41.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 127 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 185
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 74 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 128
Query: 186 VQVIGNYHSVQDALFHITSRLRET 209
V + G+ S+ A + IT+ L ET
Sbjct: 129 VTITGSPVSIALAQYLITACL-ET 151
Score = 95 (38.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 329 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 387
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 60 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 118
Query: 388 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 416
+ GA E V ++G+ + AQ LI A
Sbjct: 119 NQAEGAGERHVTITGSPVSIALAQYLITA 147
Score = 58 (25.5 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 163
V RL++ + Q G L+G+ G + E+R T
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVT 54
Score = 48 (22.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNET 79
V +L+ + GSLIGK G+ ++ + T
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVT 54
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 72 (30.4 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 326 FDASSGFTPRNRPVESGNHAAILTS--TTIEVVIPQLYMAHVYGENNSNLSHIRQISGAN 383
F + P + SG + TS T IE+ IP+LY+ + G + + +++ + N
Sbjct: 233 FSTERSYFPHLKK-SSGEPTSPSTSSNTRIELKIPELYVGAIIGRGMNRIKNLKTFTKTN 291
Query: 384 VVV----NDPKPGATEGVVMVSGTSDQMRAAQSLI 414
+VV +D K ++ S ++ A+S++
Sbjct: 292 IVVERKDDDDKDENFRKFIITSKFPKNVKLAESML 326
Score = 62 (26.9 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 22 PGYHSRGYSSGPGHETVGGRNRM--FYEEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNET 79
P ++ G SS G GG + + + +LL L + +IG GS + +
Sbjct: 14 PTNNTNGGSSDAGSAATGGAPVVGTTAQPTINHRLLLSLKEAAKIIGTKGSTISRIRAAN 73
Query: 80 GASIKIADILPDSEERIV 97
I I++ +P +RI+
Sbjct: 74 AVKIGISEKVPGCSDRIL 91
Score = 62 (26.9 bits), Expect = 0.00083, Sum P(3) = 0.00083
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 169
+P++D + R ++ +IG+ RL+V + I ++G+ G + + G I V
Sbjct: 141 APSKDEI-RDLQQLEDIGY-------VRLIVANSHISSIIGKAGATIKSLINKHGVKI-V 191
Query: 170 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHIT 203
KD P + + I+++ G S+ + L I+
Sbjct: 192 ASKDFLP---ASDERIIEIQGFPGSITNVLIEIS 222
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.416 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 424 404 0.00099 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 189
No. of states in DFA: 601 (64 KB)
Total size of DFA: 242 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 35.54u 0.11s 35.65t Elapsed: 00:00:01
Total cpu time: 35.57u 0.11s 35.68t Elapsed: 00:00:01
Start: Mon May 20 14:59:36 2013 End: Mon May 20 14:59:37 2013
WARNINGS ISSUED: 1