BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014452
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains
Length = 160
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 12/164 (7%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRH 109
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+ +
Sbjct: 5 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE--GNCPERIITLAGPTNAIFKA 62
Query: 110 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 165
+ ++ I+ A V RL+V + Q G L+G+GG + E+R +TGA
Sbjct: 63 FAM--IIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 120
Query: 166 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209
++V D P + + + + G S+ + + I + ET
Sbjct: 121 QVQV-AGDMLP---NSTERAITIAGIPQSIIECVKQICVVMLET 160
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 402
T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 90 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 141
>pdb|3KRM|A Chain A, Imp1 Kh34
pdb|3KRM|B Chain B, Imp1 Kh34
pdb|3KRM|C Chain C, Imp1 Kh34
Length = 163
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 89/167 (53%), Gaps = 20/167 (11%)
Query: 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA-DILPDSEERIVVISARENS 105
E+E+V ++ VG++IGK G ++ ASIKIA PDS+ R+V+I+ +
Sbjct: 1 EQEMV-QVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA 59
Query: 106 EMRHSPAQDAVMRVHSRIAEIG-FEPGQAVVARLLVH----SQQIGCLLGRGGHIVSEMR 160
+ + A R++ ++ E F P + V +L H + G ++G+GG V+E++
Sbjct: 60 QFK------AQGRIYGKLKEENFFGPKEEV--KLETHIRVPASAAGRVIGKGGKTVNELQ 111
Query: 161 RATGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRL 206
T A + V P+DQ P +D+ IV++IG++++ Q A I L
Sbjct: 112 NLTAAEV-VVPRDQTP---DENDQVIVKIIGHFYASQMAQRKIRDIL 154
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25NT RNA Hairpin
Length = 178
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISARENS--- 105
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I +
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 106 -------EMRHSPAQDAVMRVHSRIA-EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVS 157
++R P A S + + P +A +++V + G ++G+GG V
Sbjct: 68 VHGFIAEKIREXPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVK 127
Query: 158 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 128 AIXEQSGAWVQL---SQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
++V+IP + G+ + +++ +GA + ++ K PG TE V ++ GT + + A
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 410 AQSLIHAFI 418
+H FI
Sbjct: 68 ----VHGFI 72
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH
25 NT RNA Hairpin
Length = 178
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISARENS--- 105
K+L GS+IGKGG + Q ETGA+IK++ D P + ER+ +I +
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 106 -------EMRHSPAQDAVMRVHSRIA-EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVS 157
++R P A S + + P +A +++V + G ++G+GG V
Sbjct: 68 VHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVK 127
Query: 158 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208
+ +GA +++ Q P + + +V V G + A+ I +++E
Sbjct: 128 AIMEQSGAWVQL---SQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQE 175
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
++V+IP + G+ + +++ +GA + ++ K PG TE V ++ GT + + A
Sbjct: 8 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA 67
Query: 410 AQSLIHAFI 418
+H FI
Sbjct: 68 ----VHGFI 72
>pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 67
Query: 412 SLIH 415
L+
Sbjct: 68 YLLQ 71
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAREN 104
D GS+IGKGG ++ ++E+GASIKI + L SE+RI+ I+ ++
Sbjct: 16 DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 61
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 58
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 59 TQDQIQNAQYLLQNSVKQ 76
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Query: 412 SLIH 415
L+
Sbjct: 75 YLLQ 78
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAREN 104
D GS+IGKGG ++ ++E+GASIKI + L SE+RI+ I+ ++
Sbjct: 23 DLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 68
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 65
Query: 191 NYHSVQDALFHITSRLRE 208
+Q+A + + + +++
Sbjct: 66 TQDQIQNAQYLLQNSVKQ 83
>pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding
Protein
Length = 82
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 408
+ TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ +
Sbjct: 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 63
Query: 409 AAQSLIHA 416
AQ LI+A
Sbjct: 64 LAQYLINA 71
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 138 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 197
L + + IGC++GR G ++E+R+ +GA I++ P GS + V + G+ S+
Sbjct: 10 LTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQ-VTITGSAASISL 64
Query: 198 ALFHITSRL 206
A + I +RL
Sbjct: 65 AQYLINARL 73
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 411
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 15 TTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Query: 412 SLIH 415
L+
Sbjct: 75 YLLQ 78
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISAREN 104
D S+IGKGG ++ ++E+GASIKI + L SE+RI+ I+ ++
Sbjct: 23 DLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQD 68
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 148 LLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 207
++G+GG + ++R +GASI++ P GS D I+ + G +Q+A + + + ++
Sbjct: 28 IIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITGTQDQIQNAQYLLQNSVK 82
Query: 208 E 208
+
Sbjct: 83 Q 83
>pdb|2P2R|A Chain A, Crystal Structure Of The Third Kh Domain Of Human Poly(C)-
Binding Protein-2 In Complex With C-Rich Strand Of Human
Telomeric Dna
Length = 76
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 409
+T+ E+ IP + + G + ++ IRQ SGA + + +P G+T+ V ++G++ +
Sbjct: 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQXSGAQIKIANPVEGSTDRQVTITGSAASISL 63
Query: 410 AQSLIH 415
AQ LI+
Sbjct: 64 AQYLIN 69
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 190
Q L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G
Sbjct: 2 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQXSGAQIKI----ANPVEGST-DRQVTITG 56
Query: 191 NYHSVQDALFHITSRL 206
+ S+ A + I RL
Sbjct: 57 SAASISLAQYLINVRL 72
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENS 105
D +G +IG+ G+ + + +GA IKIA+ + S +R V I+ S
Sbjct: 14 DLIGCIIGRQGAKINEIRQXSGAQIKIANPVEGSTDRQVTITGSAAS 60
>pdb|3CDI|A Chain A, Crystal Structure Of E. Coli Pnpase
Length = 723
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMR 118
DK+ +IGKGGS++R ETG +I+I D + V I+A + + +H A+ R
Sbjct: 569 DKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKH-----AIRR 617
Query: 119 VHSRIAEI 126
+ AEI
Sbjct: 618 IEEITAEI 625
>pdb|3VKE|A Chain A, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|B Chain B, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|C Chain C, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
pdb|3VKE|D Chain D, Contribution Of The First K-Homology Domain Of
Poly(C)-Binding Protein 1 To Its Affinity And
Specificity For C-Rich Oligonucleotides
Length = 76
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENS 105
+ +LL H +VGS+IGK G V+ + E+GA I I++ +S ERI+ ++ N+
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNSPERIITLTGPTNA 56
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 6 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNSPERIITLTGPTNAIF 58
Query: 197 DALFHITSRLRETI 210
A I +L E I
Sbjct: 59 KAFAMIIDKLEEDI 72
>pdb|1ZTG|A Chain A, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|B Chain B, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|C Chain C, Human Alpha Polyc Binding Protein Kh1
pdb|1ZTG|D Chain D, Human Alpha Polyc Binding Protein Kh1
Length = 74
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENS 105
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+
Sbjct: 3 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE--GNCPERIITLTGPTNA 56
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 6 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 58
Query: 197 DALFHITSRLRETI 210
A I +L E I
Sbjct: 59 KAFAMIIDKLEEDI 72
>pdb|2AXY|A Chain A, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|B Chain B, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|C Chain C, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2AXY|D Chain D, Crystal Structure Of Kh1 Domain Of Human Poly(C)-Binding
Protein-2 With C-Rich Strand Of Human Telomeric Dna
pdb|2PQU|A Chain A, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|B Chain B, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|C Chain C, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PQU|D Chain D, Crystal Structure Of Kh1 Domain Of Human Pcbp2 Complexed
To Single- Stranded 12-Mer Telomeric Dna
pdb|2PY9|A Chain A, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|B Chain B, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|C Chain C, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
pdb|2PY9|D Chain D, Protein-Rna Interaction Involving Kh1 Domain From Human
Poly(C)-Binding Protein-2
Length = 73
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENS 105
+ +LL H +VGS+IGK G V+ + E+GA I I++ + ERI+ ++ N+
Sbjct: 5 LTIRLLXHGKEVGSIIGKKGESVKKXREESGARINISE--GNCPERIITLAGPTNA 58
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 196
RLL H +++G ++G+ G V + R +GA I + G+ + I+ + G +++
Sbjct: 8 RLLXHGKEVGSIIGKKGESVKKXREESGARINISE-------GNCPERIITLAGPTNAIF 60
Query: 197 DALFHITSRLRE 208
A I +L E
Sbjct: 61 KAFAXIIDKLEE 72
>pdb|1X4N|A Chain A, Solution Structure Of Kh Domain In Fuse Binding Protein 1
Length = 92
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 145 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 204
+G ++GRGG +S +++ +G I++ AP G + + G SVQ A
Sbjct: 26 VGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQSA-----K 75
Query: 205 RLRETIFPMKRPGPNNG 221
RL + I R GP++G
Sbjct: 76 RLLDQIVEKGRSGPSSG 92
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDS 92
VG +IG+GG + Q E+G I+IA PDS
Sbjct: 26 VGFIIGRGGEQISRIQQESGCKIQIA---PDS 54
>pdb|1DTJ|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|C Chain C, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
pdb|1DTJ|D Chain D, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain
Length = 76
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISA 101
VG+++GKGG + +Q TGA I+I+ + LP + R V I+
Sbjct: 14 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG 57
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++G+ +A
Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 410 AQSLI 414
AQ LI
Sbjct: 65 AQYLI 69
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 194
+ + V +G +LG+GG + E + TGA I++ K + + V + G+ +
Sbjct: 4 LVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAA 61
Query: 195 VQDALFHITSRL 206
Q A + I+ R+
Sbjct: 62 TQAAQYLISQRV 73
>pdb|1EC6|A Chain A, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
pdb|1EC6|B Chain B, Crystal Structure Of Nova-2 Kh3 K-Homology Rna-Binding
Domain Bound To 20-Mer Rna Hairpin
Length = 87
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISA 101
VG+++GKGG + +Q TGA I+I+ + LP + R V I+
Sbjct: 14 VGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITG 57
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++GA + ++ PG V ++G+ +A
Sbjct: 5 VEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQA 64
Query: 410 AQSLI 414
AQ LI
Sbjct: 65 AQYLI 69
>pdb|1MZB|A Chain A, Ferric Uptake Regulator
Length = 136
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 95 RIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGR--- 151
R+ ++ +++E RH A+D V+ + E G + G A V R+L + G ++
Sbjct: 20 RVKILQMLDSAEQRHMSAED----VYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFD 75
Query: 152 GGHIVSEM 159
GGH V E+
Sbjct: 76 GGHAVFEL 83
>pdb|1DT4|A Chain A, Crystal Structure Of Nova-1 Kh3 K-Homology Rna-Binding
Domain
Length = 73
Score = 32.0 bits (71), Expect = 0.68, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIA---DILPDSEERIVVISA 101
VG+++GKGG + +Q TG I+I+ + LP + R V I+
Sbjct: 14 VGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRNRKVTITG 57
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 409
+E+ +P+ + + G+ L ++++G + ++ PG V ++GT +A
Sbjct: 5 VEIAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEFLPGTRNRKVTITGTPAATQA 64
Query: 410 AQSLI 414
AQ LI
Sbjct: 65 AQYLI 69
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 194
V + V +G +LG+GG + E + TG I++ K + + V + G +
Sbjct: 4 VVEIAVPENLVGAILGKGGKTLVEYQELTGCRIQISKKGEF--LPGTRNRKVTITGTPAA 61
Query: 195 VQDALFHITSRL 206
Q A + IT R+
Sbjct: 62 TQAAQYLITQRI 73
>pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
Length = 636
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVI--SARENS 105
++V +++ K G +IGK GS R TG + KI P S E I I + R+NS
Sbjct: 96 DDVTCEVIIEARKPGLVIGKYGSTSREIVKNTGWAPKILRTPPISSEIIERIRRTLRKNS 155
Query: 106 EMRHSPAQDAVMRVHSR 122
+ R Q R+H +
Sbjct: 156 KERKKILQQLGNRIHQK 172
>pdb|2HH2|A Chain A, Solution Structure Of The Fourth Kh Domain Of Ksrp
Length = 107
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILP 90
E+ F + H K G +IG+GG V+ +TGA ++I+ LP
Sbjct: 8 EMTFSIPTH--KCGLVIGRGGENVKAINQQTGAFVEISRQLP 47
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 140 VHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDAL 199
+ + + G ++GRGG V + + TGA + + Q P G P+ ++ + G+ + A
Sbjct: 13 IPTHKCGLVIGRGGENVKAINQQTGAFVEI--SRQLPPNGDPNFKLFIIRGSPQQIDHAK 70
Query: 200 FHITSRLR 207
I ++
Sbjct: 71 QLIEEKIE 78
>pdb|4AIM|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMR 118
DK+ +IG GG ++R TGA + I D + +V +SA + ++++ A D +
Sbjct: 579 DKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIK--AAIDWIKS 630
Query: 119 VHSRIAEIG 127
+ AEIG
Sbjct: 631 ITDE-AEIG 638
>pdb|1J4W|A Chain A, Complex Of The Kh3 And Kh4 Domains Of Fbp With A
Single_stranded 29mer Dna Oligonucleotide From The Fuse
Element Of The C-Myc Oncogene
Length = 174
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 145 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 204
+G ++GR G ++ +++ G I+ P D G+ + I Q+ G Q A IT
Sbjct: 14 VGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTPERIAQITGPPDRAQHAAEIITD 68
Query: 205 RLR 207
LR
Sbjct: 69 LLR 71
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI 85
F + K G +IGKGG +++ ++GA I++
Sbjct: 106 FNFIVPTGKTGLIIGKGGETIKSISQQSGARIEL 139
>pdb|4AM3|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
pdb|4AM3|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rna
Length = 717
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHS 110
DK+ +IG GG ++R TGA + I D + +V +SA + ++++ +
Sbjct: 570 DKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAA 615
>pdb|4AID|A Chain A, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|B Chain B, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
pdb|4AID|C Chain C, Crystal Structure Of C. Crescentus Pnpase Bound To Rnase E
Recognition Peptide
Length = 726
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHS 110
DK+ +IG GG ++R TGA + I D + +V +SA + ++++ +
Sbjct: 579 DKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAA 624
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVH 120
+ +LIG+ RT ++ I+ A+I RI V S + +RHS A VM H
Sbjct: 333 IAALIGRDARGGRTL--DSAILIRTAEIDRAGHVRIGVGS----TLVRHSDAVSEVMETH 386
Query: 121 SRIAEI--GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
+++A + F+P +A G LG+ + + +R + + R
Sbjct: 387 AKVAALSNAFDPPEA------------GPALGQHPSVQAALRERNEGIADFWFRPYGGRQ 434
Query: 179 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
G DE+ ++ G + DA H T+ + + +
Sbjct: 435 GEMADELAELSGCRALIVDAEDHFTAMIAQQL 466
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 20/152 (13%)
Query: 61 VGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVH 120
+ +LIG+ RT ++ I+ A+I RI V S + +RHS A VM H
Sbjct: 333 IAALIGRDARGGRTL--DSAILIRTAEIDRAGHVRIGVGS----TLVRHSDAVSEVMETH 386
Query: 121 SRIAEI--GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
+++A + F+P +A G LG+ + + +R + + R
Sbjct: 387 AKVAALSNAFDPPEA------------GPALGQHPSVQAALRERNEGIADFWFRPYGGRQ 434
Query: 179 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210
G DE+ ++ G + DA H T+ + + +
Sbjct: 435 GEMADELAELSGCRALIVDAEDHFTAMIAQQL 466
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 261 GMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPY 293
G+G + PF +Q A G+ P++PP + +PF Y
Sbjct: 171 GLGAT-PFGYQIAEQFGI-PVIPPRASLVPFTY 201
>pdb|2OPU|A Chain A, Solution Nmr Structure Of The First Domain Of Ksrp
Length = 89
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 119 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 178
+ S++ I P ++ V +G ++GRGG ++++++ +G +++ +P
Sbjct: 1 ISSQLGPIHPPPRTSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQI-----SPDS 55
Query: 179 GSPHDEIVQVIGNYHSVQDA---LFHITSRLR 207
G + V + G SVQ A L I SR R
Sbjct: 56 GGLPERSVSLTGAPESVQKAKMMLDDIVSRGR 87
>pdb|2E3U|A Chain A, Crystal Structure Analysis Of Dim2p From Pyrococcus
Horikoshii Ot3
pdb|3AEV|B Chain B, Crystal Structure Of AEIF2ALPHA-Adim2p-Rrna Complex From
Pyrococcus Horikoshii Ot3
Length = 219
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 42/149 (28%)
Query: 59 DKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSE--MRHSPAQDAV 116
D++ LIGK G + + T I I DSE V I++ + +E + A+D V
Sbjct: 43 DRIAVLIGKKGQTKKEIEKRTKTKITI-----DSETGEVWITSTKETEDPLAVWKARDIV 97
Query: 117 MRVHSRIAEIGFEPGQAVVARLLVHSQQI---------------------GCLLGRGG-- 153
+ + GF P +A RLL + + G ++GR G
Sbjct: 98 LAIGR-----GFSPERAF--RLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRT 150
Query: 154 -HIVSEMRRATGASIRVFPKDQAPRCGSP 181
I+ EM +GAS+ V+ K A G+P
Sbjct: 151 RQIIEEM---SGASVSVYGKTVAI-IGNP 175
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 58 LDKVGSLIGKGGSIVRTFQNETGASIKIAD 87
+DK+G +IG ++ Q +TGA I I D
Sbjct: 606 VDKIGEVIGPKRQMINQIQEDTGAEITIED 635
>pdb|1WE8|A Chain A, Solution Structure Of Kh Domain In Protein Bab28342
Length = 104
Score = 28.1 bits (61), Expect = 9.6, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 341 SGNHAAILTSTTI---EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA--TE 395
S + ILT T ++ +PQ + + G + I + SGA + + G
Sbjct: 2 SSGSSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLS 61
Query: 396 GVVMVSGTSDQMRAAQSLI 414
++ +SGT ++ AA+ LI
Sbjct: 62 RLIKISGTQKEVAAAKHLI 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,619,484
Number of Sequences: 62578
Number of extensions: 592246
Number of successful extensions: 1190
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 77
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)