Query 014452
Match_columns 424
No_of_seqs 208 out of 2101
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvz_A KH type-splicing, FAR u 99.9 3.2E-26 1.1E-30 203.3 15.0 159 134-420 2-160 (164)
2 3krm_A Insulin-like growth fac 99.9 1.5E-25 5.2E-30 198.9 16.1 153 134-421 3-157 (163)
3 2anr_A Neuro-oncological ventr 99.9 1.2E-25 4.2E-30 202.4 12.7 172 131-421 3-176 (178)
4 1j4w_A FUSE binding protein; s 99.9 2.2E-25 7.4E-30 200.0 13.6 170 133-418 2-174 (174)
5 2jzx_A Poly(RC)-binding protei 99.9 1.2E-25 4.1E-30 198.9 11.7 156 132-420 3-159 (160)
6 3krm_A Insulin-like growth fac 99.9 2.6E-25 8.9E-30 197.3 13.9 152 49-209 2-157 (163)
7 2anr_A Neuro-oncological ventr 99.9 2.1E-25 7.3E-30 200.8 12.6 154 47-209 3-176 (178)
8 2jzx_A Poly(RC)-binding protei 99.9 3E-25 1E-29 196.4 10.5 149 48-208 3-159 (160)
9 1j4w_A FUSE binding protein; s 99.9 9.5E-25 3.2E-29 195.8 12.2 153 49-206 2-174 (174)
10 2jvz_A KH type-splicing, FAR u 99.9 6.9E-24 2.4E-28 188.2 13.4 149 50-209 2-161 (164)
11 3n89_A Defective in GERM LINE 99.9 1.8E-23 6E-28 205.5 17.2 220 47-418 27-259 (376)
12 2qnd_A FMR1 protein; KH domain 99.8 3.3E-19 1.1E-23 154.4 11.8 68 353-420 69-142 (144)
13 2qnd_A FMR1 protein; KH domain 99.8 2.1E-18 7.1E-23 149.4 12.2 137 49-209 3-143 (144)
14 2e3u_A PH-DIM2P, hypothetical 99.7 1.4E-16 4.8E-21 146.6 11.5 66 133-208 33-103 (219)
15 1zzk_A Heterogeneous nuclear r 99.7 2E-16 6.8E-21 123.6 9.4 72 349-420 5-76 (82)
16 2p2r_A Poly(RC)-binding protei 99.7 1.1E-16 3.7E-21 123.3 7.2 72 350-421 4-75 (76)
17 1wvn_A Poly(RC)-binding protei 99.7 1.3E-16 4.4E-21 124.8 7.6 74 349-422 4-77 (82)
18 2e3u_A PH-DIM2P, hypothetical 99.6 5.2E-16 1.8E-20 142.9 11.5 137 51-209 35-192 (219)
19 1x4n_A FAR upstream element bi 99.6 6.1E-16 2.1E-20 123.5 7.5 74 350-423 14-87 (92)
20 1j5k_A Heterogeneous nuclear r 99.6 4.7E-16 1.6E-20 123.4 6.6 72 349-420 12-83 (89)
21 1dtj_A RNA-binding neurooncolo 99.6 1E-15 3.5E-20 117.9 7.1 71 350-420 2-75 (76)
22 2axy_A Poly(RC)-binding protei 99.6 1.4E-15 4.9E-20 116.0 7.0 69 350-420 4-72 (73)
23 2dgr_A Ring finger and KH doma 99.6 1.7E-15 5.8E-20 118.2 5.9 69 349-420 8-76 (83)
24 2hh3_A KH-type splicing regula 99.6 3.8E-15 1.3E-19 121.8 7.2 72 351-422 11-82 (106)
25 1tua_A Hypothetical protein AP 99.6 1.4E-14 4.9E-19 130.1 11.4 139 136-419 6-159 (191)
26 1ec6_A RNA-binding protein NOV 99.6 3.6E-15 1.2E-19 117.8 6.6 71 351-421 3-76 (87)
27 1x4m_A FAR upstream element bi 99.6 5.7E-15 2E-19 118.3 7.3 73 349-421 13-87 (94)
28 1tua_A Hypothetical protein AP 99.6 3.1E-15 1.1E-19 134.4 6.3 135 52-208 6-160 (191)
29 2hh2_A KH-type splicing regula 99.5 7.9E-15 2.7E-19 120.3 7.3 71 352-422 8-81 (107)
30 2opv_A KHSRP protein; KH domai 99.5 2.4E-14 8.3E-19 112.5 9.4 70 350-419 13-84 (85)
31 1we8_A Tudor and KH domain con 99.5 4.9E-14 1.7E-18 115.1 8.5 72 349-420 13-86 (104)
32 2axy_A Poly(RC)-binding protei 99.5 3.1E-14 1.1E-18 108.5 5.9 70 132-208 3-72 (73)
33 1zzk_A Heterogeneous nuclear r 99.5 1.5E-13 5.3E-18 107.1 8.7 73 132-209 5-77 (82)
34 1dtj_A RNA-binding neurooncolo 99.5 9.3E-14 3.2E-18 106.8 7.3 73 134-208 3-75 (76)
35 1vig_A Vigilin; RNA-binding pr 99.5 8.2E-14 2.8E-18 105.6 6.5 67 350-418 4-70 (71)
36 2p2r_A Poly(RC)-binding protei 99.4 8E-14 2.7E-18 107.2 6.0 73 132-209 3-75 (76)
37 1wvn_A Poly(RC)-binding protei 99.4 1.2E-13 4E-18 107.8 6.6 74 131-209 3-76 (82)
38 2ctl_A Vigilin; K homology typ 99.4 2.4E-13 8.3E-18 109.3 8.3 72 349-420 15-87 (97)
39 2cte_A Vigilin; K homology typ 99.4 2E-13 6.7E-18 109.3 6.9 71 348-420 14-84 (94)
40 2ctm_A Vigilin; K homology typ 99.4 2.9E-13 9.9E-18 108.4 7.7 71 349-420 15-85 (95)
41 1j5k_A Heterogeneous nuclear r 99.4 2.6E-13 9E-18 107.5 6.1 74 131-209 11-84 (89)
42 2opv_A KHSRP protein; KH domai 99.4 7E-13 2.4E-17 104.1 8.5 74 132-208 12-85 (85)
43 1ec6_A RNA-binding protein NOV 99.4 2.7E-13 9.1E-18 107.0 5.8 74 134-209 3-76 (87)
44 1x4n_A FAR upstream element bi 99.4 5.3E-13 1.8E-17 106.4 7.3 74 131-209 12-85 (92)
45 2dgr_A Ring finger and KH doma 99.4 2.4E-13 8.3E-18 105.9 4.5 71 131-209 7-77 (83)
46 2hh2_A KH-type splicing regula 99.4 6.9E-13 2.4E-17 108.7 6.7 73 135-209 8-80 (107)
47 1x4m_A FAR upstream element bi 99.4 5E-13 1.7E-17 107.0 5.6 76 131-209 12-87 (94)
48 2hh3_A KH-type splicing regula 99.4 8.5E-13 2.9E-17 107.8 7.0 71 134-209 11-81 (106)
49 2ctk_A Vigilin; K homology typ 99.4 9E-13 3.1E-17 107.3 6.8 69 350-420 16-84 (104)
50 1we8_A Tudor and KH domain con 99.3 2.9E-12 9.8E-17 104.5 8.4 76 131-209 12-87 (104)
51 2ctm_A Vigilin; K homology typ 99.3 3.2E-12 1.1E-16 102.4 7.4 75 130-210 13-87 (95)
52 1vig_A Vigilin; RNA-binding pr 99.3 1.9E-12 6.5E-17 98.0 5.5 68 132-206 3-70 (71)
53 2cte_A Vigilin; K homology typ 99.3 3.3E-12 1.1E-16 102.2 6.8 72 131-209 14-85 (94)
54 2ctl_A Vigilin; K homology typ 99.3 5.7E-12 2E-16 101.3 8.0 73 133-209 16-88 (97)
55 3n89_A Defective in GERM LINE 99.3 6.1E-12 2.1E-16 123.7 8.6 151 49-206 105-259 (376)
56 2ctj_A Vigilin; K homology typ 99.3 9.3E-12 3.2E-16 99.5 7.8 72 348-421 14-86 (95)
57 2ctf_A Vigilin; K homology typ 99.2 1.6E-11 5.4E-16 99.5 7.7 66 350-420 26-92 (102)
58 2ctk_A Vigilin; K homology typ 99.2 1.9E-11 6.5E-16 99.5 6.3 70 133-209 16-85 (104)
59 2ctj_A Vigilin; K homology typ 99.1 6.3E-11 2.2E-15 94.6 5.7 73 130-209 13-86 (95)
60 2cpq_A FragIle X mental retard 99.1 9.7E-11 3.3E-15 92.0 4.7 66 349-419 13-80 (91)
61 2ctf_A Vigilin; K homology typ 99.0 4.2E-10 1.4E-14 91.1 7.8 67 133-209 26-93 (102)
62 1k1g_A SF1-BO isoform; splicin 98.8 7.5E-09 2.6E-13 87.4 7.8 73 348-420 4-99 (131)
63 2yqr_A KIAA0907 protein; struc 98.8 1.8E-08 6E-13 83.5 9.4 71 350-420 11-99 (119)
64 2cpq_A FragIle X mental retard 98.7 1.7E-08 6E-13 79.2 5.3 67 132-208 13-81 (91)
65 1k1g_A SF1-BO isoform; splicin 98.5 2.8E-07 9.6E-12 77.7 8.4 77 133-209 6-100 (131)
66 2yqr_A KIAA0907 protein; struc 98.4 4.4E-07 1.5E-11 75.0 7.2 77 133-209 11-100 (119)
67 2bl5_A MGC83862 protein, quaki 98.2 7.2E-07 2.5E-11 75.6 4.7 69 351-419 2-100 (140)
68 3v69_A Protein filia; RNA-bind 98.0 1.5E-05 5.1E-10 66.3 8.1 68 351-419 56-123 (140)
69 2bl5_A MGC83862 protein, quaki 98.0 6E-06 2.1E-10 70.0 5.4 74 134-207 2-100 (140)
70 3u1k_A Polyribonucleotide nucl 98.0 3.5E-06 1.2E-10 88.7 4.2 62 351-418 567-629 (630)
71 3u1k_A Polyribonucleotide nucl 97.7 2.1E-05 7.3E-10 82.7 5.6 63 133-206 566-629 (630)
72 3v69_A Protein filia; RNA-bind 97.7 7.4E-05 2.5E-09 62.1 7.1 68 136-209 58-125 (140)
73 2cxc_A NUSA; transcription ter 97.7 1.1E-05 3.9E-10 68.7 1.5 101 50-170 36-139 (144)
74 4aid_A Polyribonucleotide nucl 97.2 6.7E-05 2.3E-09 79.9 0.9 62 352-419 571-633 (726)
75 4aid_A Polyribonucleotide nucl 97.0 0.00027 9.4E-09 75.2 3.3 66 133-209 569-635 (726)
76 2cxc_A NUSA; transcription ter 96.9 0.00048 1.6E-08 58.6 3.0 39 134-172 36-74 (144)
77 2asb_A Transcription elongatio 96.2 0.0052 1.8E-07 56.8 5.5 95 59-173 126-223 (251)
78 1k0r_A NUSA; two component arr 95.9 0.0091 3.1E-07 58.3 5.9 94 59-173 249-346 (366)
79 3cdi_A Polynucleotide phosphor 95.1 0.0038 1.3E-07 66.7 0.0 63 351-419 560-623 (723)
80 2asb_A Transcription elongatio 94.9 0.022 7.4E-07 52.7 4.5 38 351-388 184-221 (251)
81 1hh2_P NUSA, N utilization sub 94.6 0.017 5.8E-07 56.1 3.1 94 59-172 245-341 (344)
82 1k0r_A NUSA; two component arr 94.5 0.035 1.2E-06 54.2 5.1 39 350-388 306-344 (366)
83 3cdi_A Polynucleotide phosphor 94.2 0.017 5.9E-07 61.7 2.5 64 134-208 560-624 (723)
84 1e3p_A Guanosine pentaphosphat 94.0 0.0027 9.3E-08 68.1 -4.2 60 353-418 600-660 (757)
85 1e3p_A Guanosine pentaphosphat 92.1 0.016 5.4E-07 62.2 -1.9 61 135-206 599-660 (757)
86 1hh2_P NUSA, N utilization sub 78.4 1.1 3.8E-05 43.3 3.0 40 47-86 300-339 (344)
87 2pt7_G HP1451, hypothetical pr 77.8 1.1 3.6E-05 38.2 2.3 32 51-82 34-65 (152)
88 1wh9_A 40S ribosomal protein S 71.6 1.6 5.4E-05 33.8 1.7 27 52-78 37-63 (92)
89 1wh9_A 40S ribosomal protein S 61.2 3.1 0.00011 32.1 1.5 28 352-379 36-63 (92)
90 2ba0_A Archeal exosome RNA bin 59.0 23 0.00079 31.9 7.2 59 353-417 138-196 (229)
91 2z0s_A Probable exosome comple 58.2 23 0.00077 32.1 7.0 59 353-417 150-209 (235)
92 2pt7_G HP1451, hypothetical pr 50.0 7.8 0.00027 32.8 2.2 29 352-380 34-62 (152)
93 3gku_A Probable RNA-binding pr 46.9 7 0.00024 35.3 1.6 34 52-85 94-127 (225)
94 3u5c_D RP13, YS3, 40S ribosoma 38.9 10 0.00035 34.5 1.3 29 52-80 46-74 (240)
95 3j20_C 30S ribosomal protein S 38.6 10 0.00036 33.8 1.3 28 52-79 42-69 (210)
96 2xzm_C KH domain containing pr 37.7 13 0.00046 33.8 1.9 29 51-79 48-76 (243)
97 3iz6_B 40S ribosomal protein S 35.1 10 0.00035 34.2 0.7 30 51-80 45-74 (227)
98 2ja9_A Exosome complex exonucl 34.9 38 0.0013 29.2 4.3 58 353-416 93-152 (175)
99 2ba0_A Archeal exosome RNA bin 33.9 63 0.0021 29.0 5.8 55 137-202 139-193 (229)
100 3r8n_C 30S ribosomal protein S 32.0 11 0.00036 33.6 0.3 34 52-85 63-100 (206)
101 2zkq_c 40S ribosomal protein S 31.1 12 0.00042 34.1 0.5 30 51-80 45-74 (243)
102 3iev_A GTP-binding protein ERA 30.3 23 0.00079 33.1 2.3 37 49-85 239-284 (308)
103 3u5c_D RP13, YS3, 40S ribosoma 30.3 19 0.00064 32.8 1.6 27 353-379 46-72 (240)
104 3i1m_C 30S ribosomal protein S 29.6 12 0.00041 33.9 0.2 27 52-78 64-90 (233)
105 2z0s_A Probable exosome comple 28.5 87 0.003 28.1 5.8 57 136-203 150-207 (235)
106 3dhx_A Methionine import ATP-b 28.3 57 0.0019 25.3 4.0 48 370-417 35-88 (106)
107 3j20_C 30S ribosomal protein S 27.9 18 0.00062 32.2 1.0 35 353-387 42-83 (210)
108 3iev_A GTP-binding protein ERA 27.1 30 0.001 32.4 2.5 38 350-387 239-285 (308)
109 2xzm_C KH domain containing pr 27.0 23 0.0008 32.2 1.6 28 352-379 48-75 (243)
110 2vqe_C 30S ribosomal protein S 26.7 19 0.00065 32.8 1.0 27 52-78 64-90 (239)
111 1go3_E DNA-directed RNA polyme 25.9 39 0.0013 29.1 2.8 28 350-380 6-34 (187)
112 3iz6_B 40S ribosomal protein S 25.5 19 0.00065 32.5 0.7 28 352-379 45-72 (227)
113 3bbn_C Ribosomal protein S3; s 24.3 17 0.00057 32.7 0.1 29 52-80 72-100 (218)
114 3eik_A Tata-box-binding protei 24.3 3.7E+02 0.013 23.8 9.0 105 95-209 97-215 (218)
115 3gku_A Probable RNA-binding pr 23.3 25 0.00085 31.7 1.0 67 352-422 93-166 (225)
116 1go3_E DNA-directed RNA polyme 22.1 48 0.0017 28.5 2.7 29 48-79 5-34 (187)
117 2zkq_c 40S ribosomal protein S 21.5 24 0.00081 32.2 0.5 29 351-379 44-72 (243)
118 3r8n_C 30S ribosomal protein S 21.0 20 0.00069 31.8 -0.0 35 353-387 63-101 (206)
119 2vqe_C 30S ribosomal protein S 20.3 32 0.0011 31.2 1.2 27 353-379 64-90 (239)
120 3bbn_C Ribosomal protein S3; s 20.1 28 0.00097 31.1 0.7 27 353-379 72-98 (218)
No 1
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.94 E-value=3.2e-26 Score=203.30 Aligned_cols=159 Identities=20% Similarity=0.386 Sum_probs=128.9
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhhcCCC
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 213 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 213 (424)
++.+|+||.+++|.||||+|++|++|+++|||+|++.++.. .....+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS---QNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT---SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC-
Confidence 57899999999999999999999999999999999975432 22367899999999999999999999988765100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCC
Q 014452 214 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPY 293 (424)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~~~~ 293 (424)
.|.+.. .|
T Consensus 78 ---------------------~~~~~~---------------------------------------------------~~ 85 (164)
T 2jvz_A 78 ---------------------GFGDRN---------------------------------------------------EY 85 (164)
T ss_dssp ---------------------CCSSCS---------------------------------------------------SC
T ss_pred ---------------------CCCCcc---------------------------------------------------cc
Confidence 000000 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccCcccceeccccchH
Q 014452 294 GSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 373 (424)
Q Consensus 294 g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~~~~g~IIGk~G~~I 373 (424)
+ ++ ...+.+|.||.+++|+||||+|++|
T Consensus 86 ~---------------------------------------~~-------------~~~~~~i~vp~~~~g~iIGk~G~~I 113 (164)
T 2jvz_A 86 G---------------------------------------SR-------------IGGGIDVPVPRHSVGVVIGRSGEMI 113 (164)
T ss_dssp T---------------------------------------TS-------------CSSSBCCEEETTTHHHHHCSSSHHH
T ss_pred C---------------------------------------CC-------------CCceEEEEEChhhccccCCCCcHhH
Confidence 0 00 0134678999999999999999999
Q ss_pred HHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 374 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 374 k~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
++|+++|||+|.|++..+...++.|+|+|++++|+.|+.+|+++|++
T Consensus 114 ~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 114 KKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 99999999999998765556689999999999999999999999874
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=198.85 Aligned_cols=153 Identities=20% Similarity=0.327 Sum_probs=128.6
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhhcCCC
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 213 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 213 (424)
.+++|+||.+.+|.||||+|++|++|+++|||+|+|.+. . .+++.+|.|+|+|+++++.+|+.+|.+++.+....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~---~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~- 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-E---TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF- 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-S---STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-C---CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc-
Confidence 478999999999999999999999999999999999753 2 23478999999999999999999999999876100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCC
Q 014452 214 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPY 293 (424)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~~~~ 293 (424)
.|
T Consensus 78 -----------~~------------------------------------------------------------------- 79 (163)
T 3krm_A 78 -----------GP------------------------------------------------------------------- 79 (163)
T ss_dssp -----------CS-------------------------------------------------------------------
T ss_pred -----------cc-------------------------------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccCcccceeccccchH
Q 014452 294 GSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 373 (424)
Q Consensus 294 g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~~~~g~IIGk~G~~I 373 (424)
. .....+.+|.||.+++|+||||+|++|
T Consensus 80 -----------------~-----------------------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I 107 (163)
T 3krm_A 80 -----------------K-----------------------------------EEVKLETHIRVPASAAGRVIGKGGKTV 107 (163)
T ss_dssp -----------------S-----------------------------------CCCCEEEEEEEETTTHHHHHCGGGHHH
T ss_pred -----------------c-----------------------------------cCCceEEEEEcChhheeeEEcCCChHH
Confidence 0 001357799999999999999999999
Q ss_pred HHHHHHhCCEEEEeCCC-CCCC-CcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 374 SHIRQISGANVVVNDPK-PGAT-EGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 374 k~Ir~~SGa~I~i~~~~-~~~~-~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
++|+++|||+|.|++.. +..+ ++.|+|+|++++|++|+.+|+++|.+-
T Consensus 108 ~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 108 NELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 99999999999998532 3333 458999999999999999999999753
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=1.2e-25 Score=202.39 Aligned_cols=172 Identities=21% Similarity=0.343 Sum_probs=132.4
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhhc
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 210 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 210 (424)
...++++|+||.+++|.||||+|++|++|+++|||+|+|.+..+. .++..+|.|+|+|+.++|.+|+.+|.+++.+..
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~--~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDF--YPGTTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--CTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCC--CCCCCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 356889999999999999999999999999999999999754321 224679999999999999999999999987751
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 014452 211 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 290 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~ 290 (424)
... .. ..+...+ +
T Consensus 81 ~~~---------~~------------------------~~~~~~~----------------------------------~ 93 (178)
T 2anr_A 81 QNV---------AK------------------------TEPVSIL----------------------------------Q 93 (178)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Ccc---------cc------------------------CCccccc----------------------------------C
Confidence 100 00 0000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccCcccceecccc
Q 014452 291 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 370 (424)
Q Consensus 291 ~~~g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~~~~g~IIGk~G 370 (424)
|. + . . ......+.+|.||.+++|+||||+|
T Consensus 94 -------------------~~-~-----------~------~-------------~~~~~~~~~i~Vp~~~vg~iIGkgG 123 (178)
T 2anr_A 94 -------------------PQ-T-----------T------V-------------NPDRANQVKIIVPNSTAGLIIGKGG 123 (178)
T ss_dssp --------------------------------------------------------CGGGGEEEEEEEHHHHHHHHCGGG
T ss_pred -------------------Cc-c-----------C------C-------------CCCCceEEEEEEchhheeeeECCCc
Confidence 00 0 0 0 0012468899999999999999999
Q ss_pred chHHHHHHHhCCEEEEeCCC--CCCCCcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 371 SNLSHIRQISGANVVVNDPK--PGATEGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 371 ~~Ik~Ir~~SGa~I~i~~~~--~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
++|++|+++|||+|.|++.. +..++++|+|+|++++|++|+.||.++|.+.
T Consensus 124 ~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 124 ATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998542 2356799999999999999999999999863
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=2.2e-25 Score=200.04 Aligned_cols=170 Identities=24% Similarity=0.390 Sum_probs=127.1
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhhcCC
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 212 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~ 212 (424)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+.+ ....+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~-----~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT-----TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 46789999999999999999999999999999999997532 1367899999999999999999999999886100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 014452 213 MKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFP 292 (424)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~~~ 292 (424)
.|.. +.|.+ + +.
T Consensus 77 ----------------------~~~~----------~~p~~-------------~---------~~-------------- 88 (174)
T 1j4w_A 77 ----------------------NPGG----------PGPGG-------------R---------GR-------------- 88 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------CCCC----------CCCCC-------------C---------CC--------------
Confidence 0000 00000 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccCcccceeccccch
Q 014452 293 YGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 372 (424)
Q Consensus 293 ~g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~~~~g~IIGk~G~~ 372 (424)
+. +. ..|.. + +.....+.+|.||.+++|+||||+|++
T Consensus 89 -~~---~~----------~~~~~--------------------------~---~~~~~~~~~i~vp~~~~g~iIGkgG~~ 125 (174)
T 1j4w_A 89 -GR---GQ----------GNWNM--------------------------G---PPGGLQEFNFIVPTGKTGLIIGKGGET 125 (174)
T ss_dssp ----------------------------------------------------------CEEEEEEETTTHHHHHCGGGHH
T ss_pred -CC---CC----------Ccccc--------------------------C---CCCCcEEEEEEEChHHcCeeECCCchH
Confidence 00 00 00000 0 001246789999999999999999999
Q ss_pred HHHHHHHhCCEEEEeCCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 014452 373 LSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLIHAFI 418 (424)
Q Consensus 373 Ik~Ir~~SGa~I~i~~~~---~~~~~r~i~I~Gt~e~v~~A~~lI~~~i 418 (424)
|++|+++|||+|.|++.. .+..++.|+|+|++++|++|+.||+++|
T Consensus 126 Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 126 IKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999999999999998542 2356799999999999999999999875
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=198.95 Aligned_cols=156 Identities=24% Similarity=0.415 Sum_probs=131.2
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhhcC
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 211 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~ 211 (424)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|... +..+|.|+|+|+.++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 45789999999999999999999999999999999999753 25689999999999999999999999988631
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q 014452 212 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPF 291 (424)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~~ 291 (424)
.. . + . .
T Consensus 76 ~~----------~-~-----------------------~----------------------------------~------ 81 (160)
T 2jzx_A 76 SS----------M-T-----------------------N----------------------------------S------ 81 (160)
T ss_dssp SC----------C-C-----------------------S----------------------------------S------
T ss_pred cc----------C-C-----------------------C----------------------------------C------
Confidence 00 0 0 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccCcccceeccccc
Q 014452 292 PYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 371 (424)
Q Consensus 292 ~~g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~~~~g~IIGk~G~ 371 (424)
. . ......+.+|.||.+++|+||||+|+
T Consensus 82 ------------~--------------------~--------------------~~~~~~~~~i~vp~~~~g~iIGkgG~ 109 (160)
T 2jzx_A 82 ------------T--------------------A--------------------ASRPPVTLRLVVPASQCGSLIGKGGC 109 (160)
T ss_dssp ------------S--------------------C--------------------CCCCSEEEEEEEEHHHHHHHHCGGGH
T ss_pred ------------c--------------------c--------------------CCCCCEEEEEEEChhheeeEECCCCH
Confidence 0 0 00013689999999999999999999
Q ss_pred hHHHHHHHhCCEEEEeC-CCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 372 NLSHIRQISGANVVVND-PKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 372 ~Ik~Ir~~SGa~I~i~~-~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
+|++|+++|||+|.|++ ..+..+++.|+|+|++++|+.|+.+|.+.|.+
T Consensus 110 ~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 110 KIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 99999999999999984 34567889999999999999999999998865
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=197.35 Aligned_cols=152 Identities=28% Similarity=0.446 Sum_probs=125.7
Q ss_pred cEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccC-CCCCcccEEEeecccccccccChhHHHHHHHHHHHHhhc
Q 014452 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI-LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127 (424)
Q Consensus 49 ~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~-~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~ 127 (424)
+-+++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|.++++. .|...+.+.+.+..
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~------~A~~~I~~~~~e~~ 75 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQF------KAQGRIYGKLKEEN 75 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHH------HHHHHHHHHHHHTT
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHH------HHHHHHHHHHhccc
Confidence 3478999999999999999999999999999999999964 5688999999999876543 34555555555442
Q ss_pred C-C--CCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHH
Q 014452 128 F-E--PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 204 (424)
Q Consensus 128 ~-~--~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~ 204 (424)
. . .....+.+|.||.+++|+||||+|++|++|+++|||+|+|.+ +..|. ...++.|+|+|++++|.+|+.+|.+
T Consensus 76 ~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~ 152 (163)
T 3krm_A 76 FFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--ENDQVIVKIIGHFYASQMAQRKIRD 152 (163)
T ss_dssp SSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--TTSEEEEEEEECHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--CCCceEEEEEeCHHHHHHHHHHHHH
Confidence 2 2 234567899999999999999999999999999999999964 33343 2344589999999999999999999
Q ss_pred HHHhh
Q 014452 205 RLRET 209 (424)
Q Consensus 205 ~l~~~ 209 (424)
++++.
T Consensus 153 ~i~~~ 157 (163)
T 3krm_A 153 ILAQV 157 (163)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=2.1e-25 Score=200.77 Aligned_cols=154 Identities=25% Similarity=0.410 Sum_probs=124.1
Q ss_pred CccEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccC---CCCCcccEEEeecccccccccChhHHHHHHHHHHH
Q 014452 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI---LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRI 123 (424)
Q Consensus 47 ~~~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~---~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i 123 (424)
+.+++++|+||.+.+|.||||+|++||+|+++|||+|+|++. .+++.+|+|+|+|..+++.. |...+.+.+
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~------A~~~I~~~~ 76 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNA------VHGFIAEKI 76 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHH------HHHHHHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHH------HHHHHHHHH
Confidence 467999999999999999999999999999999999999843 46788999999998655432 333333333
Q ss_pred HhhcC-----------------CCCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEE
Q 014452 124 AEIGF-----------------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 186 (424)
Q Consensus 124 ~e~~~-----------------~~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v 186 (424)
.+... ......+++|.||.+++|+||||+|++|++|+++|||+|+|.+... +..+.++.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~~~~~~~v 153 (178)
T 2anr_A 77 REMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GINLQNRVV 153 (178)
T ss_dssp TCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEE
T ss_pred hccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CCCCCceEE
Confidence 22110 1123478899999999999999999999999999999999976543 233678999
Q ss_pred EEEeCHHHHHHHHHHHHHHHHhh
Q 014452 187 QVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 187 ~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
+|+|++++|.+|+.+|.++|++.
T Consensus 154 ~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 154 TVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSC
T ss_pred EEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999876
No 8
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=3e-25 Score=196.40 Aligned_cols=149 Identities=30% Similarity=0.489 Sum_probs=123.6
Q ss_pred ccEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHHHHHhhc
Q 014452 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127 (424)
Q Consensus 48 ~~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~ 127 (424)
..++++|+||.+.+|.||||+|++||+|+++|||+|+|++. ++++|.|+|+|+.+++.. |...+.+.+.+..
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~------A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFK------AFAMIIDKLEEDI 74 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHH------HHHHHHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHH------HHHHHHHHHHhhc
Confidence 56889999999999999999999999999999999999875 578899999999655433 3333443333321
Q ss_pred C--------CCCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHH
Q 014452 128 F--------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDAL 199 (424)
Q Consensus 128 ~--------~~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~ 199 (424)
. .....++++|.||.+++|+||||+|++|++|+++|||+|+|.+ +..| .+.++.|+|+|++++|.+|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~ 150 (160)
T 2jzx_A 75 SSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECV 150 (160)
T ss_dssp TSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHH
T ss_pred cccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHH
Confidence 1 1233588999999999999999999999999999999999964 3333 36899999999999999999
Q ss_pred HHHHHHHHh
Q 014452 200 FHITSRLRE 208 (424)
Q Consensus 200 ~~I~~~l~~ 208 (424)
.+|.+++.+
T Consensus 151 ~~I~~~i~e 159 (160)
T 2jzx_A 151 KQICVVMLE 159 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999876
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=9.5e-25 Score=195.83 Aligned_cols=153 Identities=19% Similarity=0.347 Sum_probs=119.7
Q ss_pred cEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHHHHHhhcC
Q 014452 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIGF 128 (424)
Q Consensus 49 ~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~~ 128 (424)
..+++|+||.+.+|.||||+|++||+|+++|||+|+|.+..++..+|+|+|+|+.+++.. |.+.+..+........+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~---A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQH---AAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHH---HHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHH---HHHHHHHHHHhcccCCC
Confidence 457899999999999999999999999999999999986666788999999999766554 23333222222110000
Q ss_pred --------------------CCCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEE
Q 014452 129 --------------------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 188 (424)
Q Consensus 129 --------------------~~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I 188 (424)
.+....+++|.||.+++|+||||+|++|++|+++|||+|+|.+.. +.+..+.++.|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEEEE
Confidence 011246889999999999999999999999999999999997532 2234467899999
Q ss_pred EeCHHHHHHHHHHHHHHH
Q 014452 189 IGNYHSVQDALFHITSRL 206 (424)
Q Consensus 189 ~G~~~~v~~A~~~I~~~l 206 (424)
+|++++|.+|+.+|.++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999998864
No 10
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=6.9e-24 Score=188.23 Aligned_cols=149 Identities=19% Similarity=0.325 Sum_probs=119.8
Q ss_pred EEEEEEecccccceeeccCchHHHHHHHHhCceEEeccC--CCCCcccEEEeecccccccccChhHHHHHHHHHHHHhhc
Q 014452 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADI--LPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG 127 (424)
Q Consensus 50 ~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~--~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~ 127 (424)
++++|+||.+.+|+||||+|++||+|+++|||+|+|.+. .++..+|+|+|+|.++++.. |...+.+.+.+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~------A~~~I~~ii~e~~ 75 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQ------ACEMVMDILRERD 75 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHH------HHHHHHHHTTCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHH------HHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999743 24577899999998655332 3333333333221
Q ss_pred ---CCC------CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHH
Q 014452 128 ---FEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDA 198 (424)
Q Consensus 128 ---~~~------~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A 198 (424)
+.+ ....+++|.||.+++|+||||+|++|++|+++|||+|+|.+.+ ..+.++.|+|+|++++|..|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~-----~~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 76 QGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----GTGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp SCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC-----TTSSEEEEEEESCHHHHHHH
T ss_pred CCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC-----CCCCcEEEEEEcCHHHHHHH
Confidence 111 1134578999999999999999999999999999999997543 13568999999999999999
Q ss_pred HHHHHHHHHhh
Q 014452 199 LFHITSRLRET 209 (424)
Q Consensus 199 ~~~I~~~l~~~ 209 (424)
+.+|.+++++.
T Consensus 151 ~~~I~~~i~~~ 161 (164)
T 2jvz_A 151 ARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999999875
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.90 E-value=1.8e-23 Score=205.54 Aligned_cols=220 Identities=11% Similarity=0.083 Sum_probs=160.8
Q ss_pred CccEEEEEEecccccceeeccCc--hHHHHHHHHhCceEEeccCC-----CCCcccEEEeecccccccccChhHHHHHHH
Q 014452 47 EEEVVFKLLCHLDKVGSLIGKGG--SIVRTFQNETGASIKIADIL-----PDSEERIVVISARENSEMRHSPAQDAVMRV 119 (424)
Q Consensus 47 ~~~~~~ri~ip~~~vg~IIGk~G--~~Ik~I~~~tga~I~v~~~~-----~~~~er~v~I~G~~~~~~~~~~a~~av~~~ 119 (424)
...+++++.||..+++.||||+| ++|++|+++|||+|+|++.. +......|+|+|..++ +.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~en----------VE~A 96 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGD----------VDRA 96 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHH----------HHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHH----------HHHH
Confidence 57899999999999999999999 99999999999999999764 1235578999999655 4444
Q ss_pred HHHHHhhcCCCCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHH
Q 014452 120 HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDAL 199 (424)
Q Consensus 120 ~~~i~e~~~~~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~ 199 (424)
..+|.+. -.+++.+.+|...+.. ..-...|.. ++.++++|.+++..+. .+.....|+|+|...++..|+
T Consensus 97 R~~I~~l-----~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~---~~~~sd~V~IrG~~~nv~~ak 165 (376)
T 3n89_A 97 RMLMRRN-----CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEK---NGIVTTYLRITAREKNQHELI 165 (376)
T ss_dssp HHHHHHS-----CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEEEEEEEGGGHHHHH
T ss_pred HHHHHhc-----CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccc---cCCCCCEEEEEcChhhHHHHH
Confidence 4455442 2456677777654332 111234544 5689999988654221 112356899999999888888
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCC
Q 014452 200 FHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 279 (424)
Q Consensus 200 ~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~ 279 (424)
+.+..+++...... +
T Consensus 166 eA~~~Ll~~l~~~e----------~------------------------------------------------------- 180 (376)
T 3n89_A 166 EAAKRLNEILFRES----------P------------------------------------------------------- 180 (376)
T ss_dssp HHHHHHHHHHCC------------C-------------------------------------------------------
T ss_pred HHHHHHHHHHHhhh----------c-------------------------------------------------------
Confidence 88777777651000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEecc
Q 014452 280 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQ 359 (424)
Q Consensus 280 ~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP~ 359 (424)
.....++.+|.|+.
T Consensus 181 ------------------------------------------------------------------~~~~~~s~~v~V~~ 194 (376)
T 3n89_A 181 ------------------------------------------------------------------APENNFTLHFTLST 194 (376)
T ss_dssp ------------------------------------------------------------------CCSSCEEEEEEEEG
T ss_pred ------------------------------------------------------------------ccccceEEEEEeCH
Confidence 00124789999999
Q ss_pred Ccccceecccc--chHHHHHHHhCCEEEEeCCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHH
Q 014452 360 LYMAHVYGENN--SNLSHIRQISGANVVVNDPKPG----ATEGVVMVSGTSDQMRAAQSLIHAFI 418 (424)
Q Consensus 360 ~~~g~IIGk~G--~~Ik~Ir~~SGa~I~i~~~~~~----~~~r~i~I~Gt~e~v~~A~~lI~~~i 418 (424)
.++..|||++| ..|++|+++|||+|.+++.... .+...|+|+|+.++|+.|+.+|+++|
T Consensus 195 ~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 195 YYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp GGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 99999999999 5569999999999999753221 23468999999999999999999875
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.79 E-value=3.3e-19 Score=154.44 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=58.7
Q ss_pred EEEEeccCcccceeccccchHHHHHHHhCC-EEEEeCCCCC---CCCc--EEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGA-NVVVNDPKPG---ATEG--VVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa-~I~i~~~~~~---~~~r--~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
.+|.||.+.+|++|||+|.+|+.|++.||| +|.|....+. .+++ .|+|+|++++|+.|+.||++.|.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 779999999999999999999999999997 9999842211 2333 589999999999999999999976
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.77 E-value=2.1e-18 Score=149.40 Aligned_cols=137 Identities=17% Similarity=0.275 Sum_probs=101.5
Q ss_pred cEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeec-ccccccccChhHHHHHHHHHHHHhhc
Q 014452 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISA-RENSEMRHSPAQDAVMRVHSRIAEIG 127 (424)
Q Consensus 49 ~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G-~~~~~~~~~~a~~av~~~~~~i~e~~ 127 (424)
.++.+|+||.+.+|++||++|++|++|++++|+.|..... .+++ +.+.+ .++ ++.++.. +.+.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~---~~~~-~i~~~~~p~----------~v~~~~~-~l~~- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE---DTCT-FHIYGEDQD----------AVKKARS-FLEF- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET---TTTE-EEEEESSHH----------HHHHHHH-HHCE-
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC---Cchh-eeeccCCHH----------HHHHHHH-hhhc-
Confidence 4678999999999999999999999999999944333222 2333 44544 332 3333322 1111
Q ss_pred CCCCcceEEEEEecCCCcceeeccCCchHHHHHhhcCc-eEEEecCCCCCCCCCCCCc--EEEEEeCHHHHHHHHHHHHH
Q 014452 128 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDE--IVQVIGNYHSVQDALFHITS 204 (424)
Q Consensus 128 ~~~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga-~I~v~~~~~~p~~~~~~~r--~v~I~G~~~~v~~A~~~I~~ 204 (424)
...++.||.+++|++|||+|++|+.|++.||| +|+|.+.++.. . ...++ .|+|+|+.++|+.|+.+|.+
T Consensus 67 ------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~-~-~~~~~~~~vtI~G~~~~v~~Ak~li~~ 138 (144)
T 2qnd_A 67 ------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN-V-PQEEGMVPFVFVGTKDSIANATVLLDY 138 (144)
T ss_dssp ------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC-C-CCCTTEEEEEEEEEHHHHHHHHHHHHH
T ss_pred ------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC-c-cccCCeeEEEEEeCHHHHHHHHHHHHH
Confidence 13789999999999999999999999999997 99998754321 1 12333 58999999999999999999
Q ss_pred HHHhh
Q 014452 205 RLRET 209 (424)
Q Consensus 205 ~l~~~ 209 (424)
+|.+.
T Consensus 139 ~l~~l 143 (144)
T 2qnd_A 139 HLNYL 143 (144)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 99763
No 14
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.68 E-value=1.4e-16 Score=146.62 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=57.4
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-----HHHHHHHHHHHHHHHH
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-----YHSVQDALFHITSRLR 207 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-----~~~v~~A~~~I~~~l~ 207 (424)
+...++.||.+.++.|||++|++|+.|+++|||+|++.. .++.|+|.++ ++++.+|+.+|..+++
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999999999953 2456889886 6999999999999884
Q ss_pred h
Q 014452 208 E 208 (424)
Q Consensus 208 ~ 208 (424)
.
T Consensus 103 g 103 (219)
T 2e3u_A 103 G 103 (219)
T ss_dssp T
T ss_pred c
Confidence 3
No 15
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.67 E-value=2e-16 Score=123.65 Aligned_cols=72 Identities=26% Similarity=0.507 Sum_probs=67.6
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++++|.|+|+|++++|++|+.||+++|.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999999776677889999999999999999999999874
No 16
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=123.35 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=68.3
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++.+|.|+|+|++++|++|+.||+++|.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999999999998777788999999999999999999999999865
No 17
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.66 E-value=1.3e-16 Score=124.77 Aligned_cols=74 Identities=30% Similarity=0.503 Sum_probs=67.2
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcCc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 422 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~~ 422 (424)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++.+|.|+|+|++++|++|+.||+++|.+.+
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSEK 77 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC---
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhhh
Confidence 36889999999999999999999999999999999999976677889999999999999999999999987653
No 18
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.65 E-value=5.2e-16 Score=142.86 Aligned_cols=137 Identities=25% Similarity=0.326 Sum_probs=102.2
Q ss_pred EEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHHHHHhhc--C
Q 014452 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEIG--F 128 (424)
Q Consensus 51 ~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~--~ 128 (424)
..++.||.+.+|.|||++|++|+.|+++|||+|+++ .+++.|+|.+.....+ .+++.++.+.+.... +
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~-----~~~g~V~I~~~~~t~d-----~~~i~kA~~~I~~i~rg~ 104 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITID-----SETGEVWITSTKETED-----PLAVWKARDIVLAIGRGF 104 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEEC-----TTTCEEEEEECTTCCS-----HHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEE-----cCCCEEEEecCCCCCC-----HHHHHHHHHHHHHHhccC
Confidence 458999999999999999999999999999999994 3568899988642111 223344433333211 1
Q ss_pred C--------CCcceEEEEEecC-----------CCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEE
Q 014452 129 E--------PGQAVVARLLVHS-----------QQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 189 (424)
Q Consensus 129 ~--------~~~~~t~~l~IP~-----------~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~ 189 (424)
+ .++.....+.|+. ..+|+||||+|++|+.|++.|||+|.|.. +.|+|.
T Consensus 105 ~~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~ 172 (219)
T 2e3u_A 105 SPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAII 172 (219)
T ss_dssp CHHHHGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEE
T ss_pred CccccceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEE
Confidence 1 1222223344442 26899999999999999999999999952 359999
Q ss_pred eCHHHHHHHHHHHHHHHHhh
Q 014452 190 GNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 190 G~~~~v~~A~~~I~~~l~~~ 209 (424)
|+.++++.|+.+|++++...
T Consensus 173 G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 173 GNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp ECHHHHHHHHHHHHHHHTTC
T ss_pred eCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999653
No 19
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.62 E-value=6.1e-16 Score=123.53 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=69.1
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcCcC
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 423 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~~~ 423 (424)
.++.+|.||.+++|+||||+|++|++|+++|||+|+|++..++..+|.|+|+|++++|++|+.||+++|++..+
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 58899999999999999999999999999999999999766667889999999999999999999999987654
No 20
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.62 E-value=4.7e-16 Score=123.42 Aligned_cols=72 Identities=26% Similarity=0.507 Sum_probs=67.7
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++++|.|+|+|++++|++|+.||+++|.+
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999999776778899999999999999999999999875
No 21
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.60 E-value=1e-15 Score=117.87 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=64.2
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCC---CCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~---~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|++. .+++.++.|+|+|++++|++|+.||+++|.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999999999999999853 3456789999999999999999999998865
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.59 E-value=1.4e-15 Score=116.03 Aligned_cols=69 Identities=16% Similarity=0.325 Sum_probs=64.7
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
.++.+|.||.+.+|+||||+|++|++|+++|||+|+|++. +..+|+|+|+|++++|++|+.+|.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999864 56789999999999999999999999975
No 23
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=118.19 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=62.7
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|+.. .++++|+|+|++++|++|+.+|++++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~---~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR---DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS---SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC---CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999743 2468999999999999999999998763
No 24
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-15 Score=121.76 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=65.4
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcCc
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 422 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~~ 422 (424)
.+.+|.||.+++++||||+|++||+|+++|||+|+|++..+...+|+|+|+|++++|++|+.||+++|.+..
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~ 82 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 82 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhccc
Confidence 468999999999999999999999999999999999865556678999999999999999999999997643
No 25
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.56 E-value=1.4e-14 Score=130.07 Aligned_cols=139 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred EEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEE-----eCHHHHHHHHHHHHHHHHhhc
Q 014452 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI-----GNYHSVQDALFHITSRLRETI 210 (424)
Q Consensus 136 ~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~l~~~~ 210 (424)
.++.||.+.+|.|||++|++++.|++.++++|++.. .++.|+|+ |++.++.+|..+|..+.+..-
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999999963 46678888 999999999999988877541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 014452 211 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 290 (424)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~q~~~~~g~~~~~~~~~~~~~ 290 (424)
.+. +.. .
T Consensus 76 ~e~-----------------------------------------------------------A~~--------------L 82 (191)
T 1tua_A 76 PEK-----------------------------------------------------------AFR--------------L 82 (191)
T ss_dssp HHH-----------------------------------------------------------HGG--------------G
T ss_pred HHH-----------------------------------------------------------hhh--------------c
Confidence 000 000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEec----------cC
Q 014452 291 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIP----------QL 360 (424)
Q Consensus 291 ~~~g~~~~g~~~~~~~~~~p~~~~~~~~~~g~~~g~~~~~~~~~r~~~~~~g~~~~~~~~~t~~v~IP----------~~ 360 (424)
++ .......+.|+ .+
T Consensus 83 -------------------------------------------l~------------Dd~~~e~i~i~~~~~~~~~~~~r 107 (191)
T 1tua_A 83 -------------------------------------------LE------------EDQILVVVDLKQVVGDSQNHLKR 107 (191)
T ss_dssp -------------------------------------------GS------------TTEEEEEEETHHHHTTCHHHHHH
T ss_pred -------------------------------------------cc------------CcceeEEEEcccccccCchhHHH
Confidence 00 00112223333 34
Q ss_pred cccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Q 014452 361 YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 361 ~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~ 419 (424)
..|+||||+|++|+.|+..|||+|.|++ .+|.|.|++++++.|+..|.++|.
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 6799999999999999999999999963 389999999999999999999996
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.56 E-value=3.6e-15 Score=117.80 Aligned_cols=71 Identities=21% Similarity=0.441 Sum_probs=65.1
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCC---CCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~---~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
.+.+|.||.+++|+|||++|++|++|+++|||+|.|++. .+++.++.|+|+|++++|+.|+.||+++|.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999853 24667899999999999999999999998764
No 27
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.55 E-value=5.7e-15 Score=118.35 Aligned_cols=73 Identities=15% Similarity=0.328 Sum_probs=66.1
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCC--CCCCcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP--GATEGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~--~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|++... ...+|.|+|+|++++|++|+.||+++|.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999986432 347899999999999999999999999764
No 28
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.55 E-value=3.1e-15 Score=134.36 Aligned_cols=135 Identities=20% Similarity=0.345 Sum_probs=101.4
Q ss_pred EEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHHHHHhh--cCC
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEI--GFE 129 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~--~~~ 129 (424)
++++||.+.+|.|||++|++++.|++++|++|++ +..++.|+|+....... ..++.++.+.+... +++
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~i-----d~~~~~V~i~t~~~t~d-----p~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITV-----DTENSMVIVEPEAEGIP-----PVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEE-----ETTTTEEEEEESSTTSC-----HHHHHHHHHHHHHHHHTCC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEE-----EcCCCeEEEEeCCCCCC-----HHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999999999999999 45678899883321111 22344444433221 111
Q ss_pred --------CCcceEEEEEecC----------CCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC
Q 014452 130 --------PGQAVVARLLVHS----------QQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 191 (424)
Q Consensus 130 --------~~~~~t~~l~IP~----------~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~ 191 (424)
.++.+...+.|+. ...|+|||++|.+|+.|++.|||+|.|.. +.|.|.|+
T Consensus 76 ~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v~i~G~ 143 (191)
T 1tua_A 76 PEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEVAIIGD 143 (191)
T ss_dssp HHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEEEEEEE
T ss_pred HHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEEEEEeC
Confidence 1222333454552 35799999999999999999999998842 26999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 014452 192 YHSVQDALFHITSRLRE 208 (424)
Q Consensus 192 ~~~v~~A~~~I~~~l~~ 208 (424)
.++++.|+..|++++..
T Consensus 144 ~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 144 YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 99999999999999964
No 29
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=7.9e-15 Score=120.31 Aligned_cols=71 Identities=23% Similarity=0.290 Sum_probs=63.9
Q ss_pred EEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCC---CCCCCcEEEEEcCHHHHHHHHHHHHHHHHcCc
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 422 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~---~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~~ 422 (424)
+.+|.||.+++|+||||+|++|++|+++|||+|+|++.. .+..+++|+|+|++++|++|+.||+++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999998642 23467999999999999999999999987643
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=112.52 Aligned_cols=70 Identities=13% Similarity=0.272 Sum_probs=63.8
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCC--CCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK--PGATEGVVMVSGTSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~--~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~ 419 (424)
..+.+|.||.+++|+||||+|++|++|+++|||+|.|++.. +...+|.|+|+|+++++++|+.+|++++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999998642 34678999999999999999999999885
No 31
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.50 E-value=4.9e-14 Score=115.05 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=64.7
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCC--CCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG--ATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~--~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|++..++ ..++.|+|+|++++|++|+.||+++|..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999864332 2589999999999999999999999864
No 32
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=3.1e-14 Score=108.52 Aligned_cols=70 Identities=27% Similarity=0.527 Sum_probs=64.5
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 208 (424)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. +..+|.|+|+|+++++.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999754 25689999999999999999999999976
No 33
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.46 E-value=1.5e-13 Score=107.13 Aligned_cols=73 Identities=19% Similarity=0.494 Sum_probs=65.9
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
..++.+|.||.+++|.||||+|++|++|+++|||+|+|.+. ++++.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999642 22467899999999999999999999999876
No 34
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.46 E-value=9.3e-14 Score=106.79 Aligned_cols=73 Identities=25% Similarity=0.420 Sum_probs=63.9
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 208 (424)
.+.+|.||.+.+|+|||++|++|++|+++|||+|+|.+.++. .+++.++.|+|+|+++++.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999764332 2346789999999999999999999998765
No 35
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.46 E-value=8.2e-14 Score=105.59 Aligned_cols=67 Identities=13% Similarity=0.308 Sum_probs=61.2
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHH
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 418 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i 418 (424)
..+.+|.||.+++|.|||++|++|++|+++|||+|.|++. +..++.|+|+|++++|++|+.+|++.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999753 346789999999999999999998753
No 36
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.45 E-value=8e-14 Score=107.16 Aligned_cols=73 Identities=29% Similarity=0.511 Sum_probs=65.8
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
..++.+|.||.+++|.|||++|++|++|+++|||+|+|.+. ++++.+|.|+|+|+++++.+|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45788999999999999999999999999999999999742 23478999999999999999999999998764
No 37
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=1.2e-13 Score=107.82 Aligned_cols=74 Identities=27% Similarity=0.508 Sum_probs=65.1
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
...++.+|.||.+++|.||||+|++|++|+++|||+|+|.+. ++++.+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999999999999753 23468999999999999999999999998776
No 38
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.44 E-value=2.4e-13 Score=109.34 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=64.1
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCC-CCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~-~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..++.+|.||.++++.|||++|++|++|+++|||+|.|++.. +...++.|+|+|++++|++|+.+|++.+..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999998542 223678999999999999999999998763
No 39
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2e-13 Score=109.32 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=63.8
Q ss_pred CcceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 348 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 348 ~~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
.++++.+|.||.+++|.|||++|++|++|+++|||+|.|++.. ..++.|+|+|++++|++|+.+|++.+..
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 3568999999999999999999999999999999999997432 3458999999999999999999998864
No 40
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=2.9e-13 Score=108.43 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=63.8
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..++.+|.||.++++.|||++|++|++|+++|||+|+|++.. ...++.|+|+|++++|++|+.+|+++++.
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999997532 23568999999999999999999998864
No 41
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.40 E-value=2.6e-13 Score=107.51 Aligned_cols=74 Identities=20% Similarity=0.517 Sum_probs=66.7
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
...++.+|.||.+.+|.||||+|++|++|+++|||+|+|.+. ++.+.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 456889999999999999999999999999999999999642 22467899999999999999999999999886
No 42
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.40 E-value=7e-13 Score=104.11 Aligned_cols=74 Identities=20% Similarity=0.437 Sum_probs=64.6
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 208 (424)
...+.+|.||.+.+|+||||+|++||+|+++|||+|+|..+... ....+|.|+|+|+++++++|+.+|.+++.+
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999754321 236789999999999999999999998864
No 43
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=2.7e-13 Score=107.03 Aligned_cols=74 Identities=24% Similarity=0.414 Sum_probs=65.5
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
.+++|.||.+.+|+|||++|++|++|+++|||+|+|.+.++. .+++.+|.|+|+|+++++.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999764321 23467899999999999999999999999875
No 44
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=5.3e-13 Score=106.38 Aligned_cols=74 Identities=22% Similarity=0.401 Sum_probs=66.6
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
...++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. .+..+|.|+|+|++++|++|+.+|.+++++.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999999997542 2357899999999999999999999999886
No 45
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-13 Score=105.94 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=63.4
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
....+++|.||.+++|.||||+|++||+|+++|||+|+|+..+ .++.|+|+|+++++++|+.+|.+++...
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 4567899999999999999999999999999999999997532 3688999999999999999999977654
No 46
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=6.9e-13 Score=108.69 Aligned_cols=73 Identities=21% Similarity=0.396 Sum_probs=64.1
Q ss_pred EEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 135 t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
+++|.||.+++|+||||+|++||+|+++|||+|+|.++. .+ .....+|.|+|+|+.++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999999999999997542 22 22357899999999999999999999998776
No 47
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=5e-13 Score=106.99 Aligned_cols=76 Identities=16% Similarity=0.379 Sum_probs=66.7
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
...++.+|.||.+++|+||||+|++||+|+++|||+|+|.++... ....+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999999999999999999999754321 1247899999999999999999999999775
No 48
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=8.5e-13 Score=107.76 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=63.9
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
.+++|.||.+.+++||||+|++||+|+++|+|+|+|.+++ ....+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3679999999999999999999999999999999997532 1356899999999999999999999999887
No 49
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=9e-13 Score=107.33 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=62.5
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..+.+|.||.+++|.|||++|++|++|+++|||+|.|++. +...+.|+|+|++++|++|+.+|++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999753 33457999999999999999999998864
No 50
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=2.9e-12 Score=104.51 Aligned_cols=76 Identities=22% Similarity=0.402 Sum_probs=65.8
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
....+.+|.||.+.+|+||||+|++|++|+++|||+|+|.+..+. ..+.++.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEG---TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCC---SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCC---CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 345788999999999999999999999999999999999754321 1246899999999999999999999999765
No 51
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=3.2e-12 Score=102.35 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=66.7
Q ss_pred CCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 130 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 130 ~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
....++.+|.||.++++.|||++|++|++|+++|||+|+|+++.+ ..++.|+|+|.+++|++|+.+|..++++.
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEEY 86 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 355688999999999999999999999999999999999965321 35789999999999999999999999887
Q ss_pred c
Q 014452 210 I 210 (424)
Q Consensus 210 ~ 210 (424)
.
T Consensus 87 ~ 87 (95)
T 2ctm_A 87 L 87 (95)
T ss_dssp H
T ss_pred H
Confidence 4
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.30 E-value=1.9e-12 Score=98.02 Aligned_cols=68 Identities=15% Similarity=0.285 Sum_probs=60.2
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHH
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 206 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 206 (424)
...+.+|.||.++++.|||++|++|++|+++|||+|+|++.. ..+|.|+|+|+.+++++|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999997532 36789999999999999999998753
No 53
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.3e-12 Score=102.17 Aligned_cols=72 Identities=13% Similarity=0.245 Sum_probs=65.0
Q ss_pred CcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 131 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 131 ~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
...++.+|.||.+.+|.|||++|++|++|+++|||+|+|++.+ ..++.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 4568899999999999999999999999999999999997532 24578999999999999999999999886
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=5.7e-12 Score=101.27 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=64.7
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
.++++|.||..+++.|||++|++|++|+++|||+|+|++..+ ....+|.|+|+|+.+++.+|+.+|..++.+.
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~----~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD----GNQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT----CSSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999975431 1246889999999999999999999998765
No 55
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.27 E-value=6.1e-12 Score=123.69 Aligned_cols=151 Identities=15% Similarity=0.117 Sum_probs=103.5
Q ss_pred cEEEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCC--CCcccEEEeecccccccccChhHHHHHHHHHHHHhh
Q 014452 49 EVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILP--DSEERIVVISARENSEMRHSPAQDAVMRVHSRIAEI 126 (424)
Q Consensus 49 ~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~--~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~ 126 (424)
.+++.+.+|...++. ..-+..|.+ ++.++++|.|+.... +.....|+|+|...++.. +.+|+..+.+.+.+.
T Consensus 105 Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~---akeA~~~Ll~~l~~~ 178 (376)
T 3n89_A 105 HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHE---LIEAAKRLNEILFRE 178 (376)
T ss_dssp EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHH---HHHHHHHHHHHHCC-
T ss_pred CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHHH---HHHHHHHHHHHHHhh
Confidence 345667777654443 122345555 567999999964311 123678999999877654 455555555555443
Q ss_pred cCCCCcceEEEEEecCCCcceeeccCC--chHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHH
Q 014452 127 GFEPGQAVVARLLVHSQQIGCLLGRGG--HIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 204 (424)
Q Consensus 127 ~~~~~~~~t~~l~IP~~~vg~IIGkgG--~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~ 204 (424)
.......++++|.|+..+|..|||++| ..|++|+++|||+|.++..++. +........|+|+|+.++|.+|+..|.+
T Consensus 179 e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~-~d~~~~~~~ItItGs~e~V~~Ark~I~~ 257 (376)
T 3n89_A 179 SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNR-NETRGNIYEIKVVGNIDNVLKARRYIMD 257 (376)
T ss_dssp -CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHH
T ss_pred hcccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCc-ccccCCceEEEEEeCHHHHHHHHHHHHh
Confidence 233456789999999999999999999 5669999999999999754321 1111245689999999999999999999
Q ss_pred HH
Q 014452 205 RL 206 (424)
Q Consensus 205 ~l 206 (424)
+|
T Consensus 258 lL 259 (376)
T 3n89_A 258 LL 259 (376)
T ss_dssp TS
T ss_pred hC
Confidence 88
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=9.3e-12 Score=99.47 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred CcceEEEEEeccCcccceeccccchHHHHHHHh-CCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHcC
Q 014452 348 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQIS-GANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 421 (424)
Q Consensus 348 ~~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~S-Ga~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~~ 421 (424)
.+.++.+|.||.++++.|||++|++|++|+++| ||+|.|++ ++...+.|+|.|+.++|++|+.+|++.+..-
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 457889999999999999999999999999999 99999964 4456779999999999999999999998753
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=1.6e-11 Score=99.50 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=60.4
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHH-hCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHHc
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQI-SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 420 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~-SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~~ 420 (424)
..+.+|.||..++++|||++|++|++|+++ ++++|.+++ .++.|+|+|++++|++|+.+|++.+++
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 599999974 457999999999999999999998874
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=1.9e-11 Score=99.47 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=62.5
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
..+.+|.||.+.++.|||++|++|++|+++|||+|+|++.. ...+.|+|+|+.+++++|+.+|..++.+.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 47889999999999999999999999999999999997532 24568999999999999999999998764
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=6.3e-11 Score=94.62 Aligned_cols=73 Identities=14% Similarity=0.206 Sum_probs=65.7
Q ss_pred CCcceEEEEEecCCCcceeeccCCchHHHHHhhc-CceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHh
Q 014452 130 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT-GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 208 (424)
Q Consensus 130 ~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~t-ga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 208 (424)
.++.++..|.||.++++.|||++|++|++|+++| ||+|+|++.. +..+.|+|+|+.++|++|+.+|..++.+
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4567789999999999999999999999999999 9999996432 4567899999999999999999999987
Q ss_pred h
Q 014452 209 T 209 (424)
Q Consensus 209 ~ 209 (424)
.
T Consensus 86 ~ 86 (95)
T 2ctj_A 86 K 86 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=9.7e-11 Score=92.02 Aligned_cols=66 Identities=18% Similarity=0.367 Sum_probs=59.3
Q ss_pred cceEEEEEeccCcccceeccccchHHHHHHHhCCE-EEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHH
Q 014452 349 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGAN-VVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 349 ~~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~-I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~i~ 419 (424)
..+..+|.||.+++|.|||++|++|++|+++|||+ |.|++ ++.+|+|.| +.+++++|+.+|+...+
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVED 80 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhhe
Confidence 46889999999999999999999999999999998 99963 348999999 99999999999976543
No 61
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=4.2e-10 Score=91.08 Aligned_cols=67 Identities=13% Similarity=0.195 Sum_probs=60.7
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhh-cCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRA-TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~-tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
.++.+|.||.++|+.|||++|++|++|+++ ++++|+|+. .++.|+|+|+++.|.+|+.+|..++++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 499999863 3568999999999999999999999876
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.82 E-value=7.5e-09 Score=87.39 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=61.5
Q ss_pred CcceEEEEEeccC------cccceeccccchHHHHHHHhCCEEEEeCCC----------------CCCCCcEEEEEc-CH
Q 014452 348 LTSTTIEVVIPQL------YMAHVYGENNSNLSHIRQISGANVVVNDPK----------------PGATEGVVMVSG-TS 404 (424)
Q Consensus 348 ~~~~t~~v~IP~~------~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~----------------~~~~~r~i~I~G-t~ 404 (424)
....+.+|.||.+ ++|.|||++|++||+|+++|||+|.|...- ....+-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3568999999988 889999999999999999999999996410 112356888999 89
Q ss_pred HHHHHHHHHHHHHHHc
Q 014452 405 DQMRAAQSLIHAFILC 420 (424)
Q Consensus 405 e~v~~A~~lI~~~i~~ 420 (424)
+.+++|+.+|+++|..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999965
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.8e-08 Score=83.47 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=57.2
Q ss_pred ceEEEEEeccC-------cccceeccccchHHHHHHHhCCEEEEeCCC----------CCCCCcEEEEEc-CHHHHHHHH
Q 014452 350 STTIEVVIPQL-------YMAHVYGENNSNLSHIRQISGANVVVNDPK----------PGATEGVVMVSG-TSDQMRAAQ 411 (424)
Q Consensus 350 ~~t~~v~IP~~-------~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~----------~~~~~r~i~I~G-t~e~v~~A~ 411 (424)
..+.+|.||.+ ++|.|||++|++||+|+++|||+|.|...- +..++-.|.|++ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46778887765 789999999999999999999999996221 011334788876 899999999
Q ss_pred HHHHHHHHc
Q 014452 412 SLIHAFILC 420 (424)
Q Consensus 412 ~lI~~~i~~ 420 (424)
.||+++|..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999864
No 64
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.68 E-value=1.7e-08 Score=79.16 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=57.4
Q ss_pred cceEEEEEecCCCcceeeccCCchHHHHHhhcCce-EEEecCCCCCCCCCCCCcEEEEEe-CHHHHHHHHHHHHHHHHh
Q 014452 132 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPKDQAPRCGSPHDEIVQVIG-NYHSVQDALFHITSRLRE 208 (424)
Q Consensus 132 ~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~-I~v~~~~~~p~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~l~~ 208 (424)
..+...|.||.+.++.|||++|++|++|+++|||+ |.+.. .+..|+|.| +.+++++|+.+|..+.+.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 45778999999999999999999999999999998 99952 246799999 899999999888654433
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.51 E-value=2.8e-07 Score=77.70 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=61.4
Q ss_pred ceEEEEEecCC------CcceeeccCCchHHHHHhhcCceEEEecCCCC-----------CCCCCCCCcEEEEEe-CHHH
Q 014452 133 AVVARLLVHSQ------QIGCLLGRGGHIVSEMRRATGASIRVFPKDQA-----------PRCGSPHDEIVQVIG-NYHS 194 (424)
Q Consensus 133 ~~t~~l~IP~~------~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~-----------p~~~~~~~r~v~I~G-~~~~ 194 (424)
.++.++.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +......+-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 46788999988 78899999999999999999999999763211 011112355788999 5889
Q ss_pred HHHHHHHHHHHHHhh
Q 014452 195 VQDALFHITSRLRET 209 (424)
Q Consensus 195 v~~A~~~I~~~l~~~ 209 (424)
+.+|+++|.++|.+.
T Consensus 86 ~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 86 VKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999775
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=4.4e-07 Score=75.05 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=57.4
Q ss_pred ceEEEEEecCC-------CcceeeccCCchHHHHHhhcCceEEEecCCCC---C--CCCCCCCcEEEEEe-CHHHHHHHH
Q 014452 133 AVVARLLVHSQ-------QIGCLLGRGGHIVSEMRRATGASIRVFPKDQA---P--RCGSPHDEIVQVIG-NYHSVQDAL 199 (424)
Q Consensus 133 ~~t~~l~IP~~-------~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~---p--~~~~~~~r~v~I~G-~~~~v~~A~ 199 (424)
.++.++.||.+ ++|.|||++|.+||+|+++|||+|.|..+... + ......+-.|.|.+ +.+++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 35677888765 67999999999999999999999999643210 0 00112334677776 599999999
Q ss_pred HHHHHHHHhh
Q 014452 200 FHITSRLRET 209 (424)
Q Consensus 200 ~~I~~~l~~~ 209 (424)
.+|.+++.+.
T Consensus 91 ~~Ie~Ll~~v 100 (119)
T 2yqr_A 91 KLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhch
Confidence 9999999753
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.25 E-value=7.2e-07 Score=75.65 Aligned_cols=69 Identities=9% Similarity=0.257 Sum_probs=53.3
Q ss_pred eEEEEEecc------CcccceeccccchHHHHHHHhCCEEEEeCCCC------------------CCCCcEEEEEc-CHH
Q 014452 351 TTIEVVIPQ------LYMAHVYGENNSNLSHIRQISGANVVVNDPKP------------------GATEGVVMVSG-TSD 405 (424)
Q Consensus 351 ~t~~v~IP~------~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~------------------~~~~r~i~I~G-t~e 405 (424)
.+.+|.||. +++|.|||++|+++|+|+++|||+|.|...-. ...+=-|.|++ +++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 456777774 45999999999999999999999999974211 11123788888 443
Q ss_pred -----HHHHHHHHHHHHHH
Q 014452 406 -----QMRAAQSLIHAFIL 419 (424)
Q Consensus 406 -----~v~~A~~lI~~~i~ 419 (424)
.+++|+.+|+.+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 79999999999875
No 68
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.02 E-value=1.5e-05 Score=66.28 Aligned_cols=68 Identities=10% Similarity=0.234 Sum_probs=60.2
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHH
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~i~ 419 (424)
...-+.|....++.|+|++|+.|++|+..|.|.|+|+.-.+ +.+..|+|.|++..-..|+.||+....
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 34668899999999999999999999999999999986533 467899999999999999999988754
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.00 E-value=6e-06 Score=69.97 Aligned_cols=74 Identities=20% Similarity=0.247 Sum_probs=54.2
Q ss_pred eEEEEEecCCC------cceeeccCCchHHHHHhhcCceEEEecCCCCC------------CC-CCCCCcEEEEEeC-HH
Q 014452 134 VVARLLVHSQQ------IGCLLGRGGHIVSEMRRATGASIRVFPKDQAP------------RC-GSPHDEIVQVIGN-YH 193 (424)
Q Consensus 134 ~t~~l~IP~~~------vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p------------~~-~~~~~r~v~I~G~-~~ 193 (424)
++.++.||.+. +|.|||++|.++|+|+++|||+|.|-.+...- .. ....+--|.|++. .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46688888764 89999999999999999999999997643210 00 0112236888884 32
Q ss_pred -----HHHHHHHHHHHHHH
Q 014452 194 -----SVQDALFHITSRLR 207 (424)
Q Consensus 194 -----~v~~A~~~I~~~l~ 207 (424)
.+.+|+.+|.++|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899988888775
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.97 E-value=3.5e-06 Score=88.65 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=54.5
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHH
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFI 418 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~i 418 (424)
....|.||.+.++.|||+||++||.|+++|||+|.|.+ +.+|.|.+ +.+.+++|+.+|++.+
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999953 46899998 5789999999998765
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.75 E-value=2.1e-05 Score=82.73 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=53.6
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHH
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-YHSVQDALFHITSRL 206 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 206 (424)
.....|.||.+.++.|||++|++||.|+++|||+|.|.. +..|.|.+. .+.+.+|+.+|..++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d-----------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD-----------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999952 346999996 688999999887654
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.71 E-value=7.4e-05 Score=62.12 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=60.1
Q ss_pred EEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhh
Q 014452 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 209 (424)
Q Consensus 136 ~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 209 (424)
+.|.|....++.|+|++|+.|++|+..|++.|++..-+ .+....|+|.|++..-.+|+.+|..++..+
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999997532 146778999999999999999999988654
No 73
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.65 E-value=1.1e-05 Score=68.71 Aligned_cols=101 Identities=20% Similarity=0.347 Sum_probs=72.0
Q ss_pred EEEEEEecccccceeeccCchHHHHHHHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHH--HHHhhc
Q 014452 50 VVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHS--RIAEIG 127 (424)
Q Consensus 50 ~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~--~i~e~~ 127 (424)
-.+.++|+...+|+.||++|++|+.|+++.|-+|.|-+. +..+ ..-+..++. .+....
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~-----------s~d~---------~~fI~naLsPA~V~~V~ 95 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY-----------SSDL---------ERIVKNLFPGVKIESIN 95 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC-----------CSSH---------HHHHHHHSTTSCEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc-----------CCCH---------HHHHHHhcCCceEEEEE
Confidence 356889999999999999999999999999999998432 1111 001111110 000000
Q ss_pred CC-CCcceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEe
Q 014452 128 FE-PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 170 (424)
Q Consensus 128 ~~-~~~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~ 170 (424)
.. .++.....+.||.++.+..|||+|.+++-..+-||.+|.|.
T Consensus 96 i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 96 VRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 11 02345678899999999999999999999999999988774
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.21 E-value=6.7e-05 Score=79.90 Aligned_cols=62 Identities=29% Similarity=0.396 Sum_probs=11.7
Q ss_pred EEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHH
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~i~ 419 (424)
...+.||.+.++.|||+||.+||.|.++||++|.|.+ +..|.|.+ +.+.+++|+.+|+.++.
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d------dG~v~I~~~~~~~~~~A~~~i~~i~~ 633 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND------DGVVKVSASDGAKIKAAIDWIKSITD 633 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC------CceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 5779999999999999999999999999999999953 35678877 68999999999988764
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.01 E-value=0.00027 Score=75.22 Aligned_cols=66 Identities=23% Similarity=0.389 Sum_probs=12.1
Q ss_pred ceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHHHhh
Q 014452 133 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-YHSVQDALFHITSRLRET 209 (424)
Q Consensus 133 ~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l~~~ 209 (424)
.....+.||.+.++.|||+||.+||.|.++||++|.+.. +..|.|.+. .+++++|+.+|..++.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d-----------dG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND-----------DGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC-----------CceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 345788999999999999999999999999999998852 234778775 889999999998888654
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=96.88 E-value=0.00048 Score=58.62 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=35.5
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecC
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 172 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~ 172 (424)
-.+.+.|+...+|..||++|++|+.|+++.|-+|++..-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 457889999999999999999999999999999999764
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.21 E-value=0.0052 Score=56.82 Aligned_cols=95 Identities=24% Similarity=0.279 Sum_probs=64.4
Q ss_pred cccceeeccCchHHHHH-HHHhCceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHHH--HHhhcCCCCcceE
Q 014452 59 DKVGSLIGKGGSIVRTF-QNETGASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHSR--IAEIGFEPGQAVV 135 (424)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I-~~~tga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~~--i~e~~~~~~~~~t 135 (424)
+-+|+.||++|++|+.| ++..|=+|.|-.-. -.+ ..-+..++.- +............
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-----------~dp---------~~fi~nalsPA~V~~V~i~~~~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-----------DDP---------ARFVANALSPAKVVSVSVIDQTARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-----------SSH---------HHHHHHHTTTSCCSEEEEEETTTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEec-----------CCH---------HHHHHhccCCcceEEEEEEcCCCcE
Confidence 45999999999999999 66678888884321 111 0011111100 0000000112246
Q ss_pred EEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCC
Q 014452 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173 (424)
Q Consensus 136 ~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~ 173 (424)
..+.||..+.+.-|||+|.+++--.+-||.+|.|....
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 78899999999999999999999999999999997654
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.90 E-value=0.0091 Score=58.29 Aligned_cols=94 Identities=26% Similarity=0.315 Sum_probs=65.6
Q ss_pred cccceeeccCchHHHHHHHHh-CceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHH--HHHhh-cCCCCcce
Q 014452 59 DKVGSLIGKGGSIVRTFQNET-GASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHS--RIAEI-GFEPGQAV 134 (424)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~--~i~e~-~~~~~~~~ 134 (424)
+-+|+.||++|++|+.|.++. |=+|.|-.-. -.+ ..-+..++. .+... ..+ ....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s-----------~dp---------~~fi~nalsPA~V~~V~~~~-~~~~ 307 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYD-----------DDP---------ARFVANALSPAKVVSVSVID-QTAR 307 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECC-----------SSH---------HHHHHHHTTTSCCSEEEEEE-TTTT
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcC-----------CCH---------HHHHHHhcCCcceeEEEEEc-CCCc
Confidence 569999999999999999998 8888884321 111 001111110 00000 011 1234
Q ss_pred EEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCC
Q 014452 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173 (424)
Q Consensus 135 t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~ 173 (424)
...+.||..+.+..|||+|.+++-..+-||.+|.|....
T Consensus 308 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 308 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 678999999999999999999999999999999997654
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.06 E-value=0.0038 Score=66.65 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=0.0
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHHH
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFIL 419 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~i~ 419 (424)
....+.||.+.++.|||++|.+|+.|.++||+.|.|.+ +..|.|++ +.+.+++|+.+|+..+.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 35778999999999999999999999999999998853 35677776 56788889888876653
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=94.90 E-value=0.022 Score=52.67 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=35.6
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeC
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 388 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~ 388 (424)
.+..+.||.+..+..|||+|.|++--.+.||.+|.|..
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 46889999999999999999999999999999999973
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.57 E-value=0.017 Score=56.13 Aligned_cols=94 Identities=24% Similarity=0.417 Sum_probs=64.0
Q ss_pred cccceeeccCchHHHHHHHHh-CceEEeccCCCCCcccEEEeecccccccccChhHHHHHHHHH--HHHhhcCCCCcceE
Q 014452 59 DKVGSLIGKGGSIVRTFQNET-GASIKIADILPDSEERIVVISARENSEMRHSPAQDAVMRVHS--RIAEIGFEPGQAVV 135 (424)
Q Consensus 59 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~er~v~I~G~~~~~~~~~~a~~av~~~~~--~i~e~~~~~~~~~t 135 (424)
+-+|+.||.+|.+|+.|.++. |=+|.|-.- +-.+ ..-+..++. .+............
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-----------s~d~---------~~fi~nal~Pa~v~~v~~~d~~~~~ 304 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-----------SDDP---------KQLIANALAPATVIEVEILDKENKA 304 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-----------CSSH---------HHHHHHHTCSSCCSEEEEEETTTTE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-----------CCCH---------HHHHHHhcCccEEEEEEEEcCCCCE
Confidence 458999999999999999997 777877422 1111 001111110 00000010122346
Q ss_pred EEEEecCCCcceeeccCCchHHHHHhhcCceEEEecC
Q 014452 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 172 (424)
Q Consensus 136 ~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~ 172 (424)
..+.||..+.+.-|||+|.+++--..-||.+|.|...
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 7899999999999999999999999999999999754
No 82
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=94.48 E-value=0.035 Score=54.17 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=36.0
Q ss_pred ceEEEEEeccCcccceeccccchHHHHHHHhCCEEEEeC
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 388 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~ 388 (424)
.....+.||.+..+..|||+|.|++-..+.||.+|.|..
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 356889999999999999999999999999999999963
No 83
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.23 E-value=0.017 Score=61.67 Aligned_cols=64 Identities=19% Similarity=0.385 Sum_probs=0.0
Q ss_pred eEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHHHh
Q 014452 134 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-YHSVQDALFHITSRLRE 208 (424)
Q Consensus 134 ~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l~~ 208 (424)
....+.||.+.++.+||++|.+|+.|.+++|+.|.+.. +..|.|.+. .+.+++|+.+|..++.+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 44678899999999999999999999999999998842 334677664 56777787777666543
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.02 E-value=0.0027 Score=68.08 Aligned_cols=60 Identities=23% Similarity=0.444 Sum_probs=21.4
Q ss_pred EEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFI 418 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~i 418 (424)
..|.||.+.++.|||++|.+||.|.++||+.|.|.+ +..|.|+. +.+..++|+.+|+...
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 458899999999999999999999999999999963 46788877 6788888887777654
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.05 E-value=0.016 Score=62.21 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=20.4
Q ss_pred EEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHHHHH
Q 014452 135 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-YHSVQDALFHITSRL 206 (424)
Q Consensus 135 t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~l 206 (424)
...|.||.+.++.+||++|.+||.|.+++|+.|.+.. +..|.|... .+..++|+..|..+.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999999999998852 334667664 666667766665544
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=78.36 E-value=1.1 Score=43.30 Aligned_cols=40 Identities=30% Similarity=0.371 Sum_probs=36.1
Q ss_pred CccEEEEEEecccccceeeccCchHHHHHHHHhCceEEec
Q 014452 47 EEEVVFKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKIA 86 (424)
Q Consensus 47 ~~~~~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v~ 86 (424)
++.-...+.||.+..++-|||+|.|++.-..-||.+|.|.
T Consensus 300 ~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 300 KENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 3445678999999999999999999999999999999984
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=77.76 E-value=1.1 Score=38.22 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=27.0
Q ss_pred EEEEEecccccceeeccCchHHHHHHHHhCce
Q 014452 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNETGAS 82 (424)
Q Consensus 51 ~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~ 82 (424)
++.+.+..+..|.||||.|.|++.|+--+..-
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~ 65 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNW 65 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHH
Confidence 45677788999999999999999999877433
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=71.65 E-value=1.6 Score=33.82 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=23.6
Q ss_pred EEEEecccccceeeccCchHHHHHHHH
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNE 78 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~ 78 (424)
++|.|....-|.|||++|+.|++|+.+
T Consensus 37 i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 37 TEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp EEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 577888899999999999999988775
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=61.19 E-value=3.1 Score=32.14 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=23.0
Q ss_pred EEEEEeccCcccceeccccchHHHHHHH
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
..+|.|-...-|.|||++|..|++|++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4667777788899999999999887654
No 90
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=59.01 E-value=23 Score=31.92 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=47.2
Q ss_pred EEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEcCHHHHHHHHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 417 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~Gt~e~v~~A~~lI~~~ 417 (424)
.-+.++...+.+++|++++.++.|.+.+++.|.+- .+-.|=|.++.+....+...|+..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG------~NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG------QNGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC------TTSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE------CCcEEEEeCCchhHHHHHHHHHHH
Confidence 34689999999999999999999999999999994 334677899887666666666544
No 91
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=58.20 E-value=23 Score=32.08 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=47.9
Q ss_pred EEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAF 417 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~~ 417 (424)
.-+.|+...+.+++|++++.+..|.+.++++|.+-. +..|-|.+ +++.+..+...|+.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999953 35677875 777777777666655
No 92
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=50.02 E-value=7.8 Score=32.82 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=25.1
Q ss_pred EEEEEeccCcccceeccccchHHHHHHHh
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQIS 380 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~S 380 (424)
+..+.|-.+-.|.+|||.|.+++.|+-.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 56777778899999999999999988765
No 93
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=46.89 E-value=7 Score=35.33 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEEecccccceeeccCchHHHHHHHHhCceEEe
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETGASIKI 85 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~tga~I~v 85 (424)
+.|.|..+..|.||||.|.+++.||.-+..-++-
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~ 127 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK 127 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHh
Confidence 4555677889999999999999999988765544
No 94
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=38.89 E-value=10 Score=34.51 Aligned_cols=29 Identities=7% Similarity=0.225 Sum_probs=24.6
Q ss_pred EEEEecccccceeeccCchHHHHHHHHhC
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETG 80 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~tg 80 (424)
++|.|....-|.|||++|+.|++|+....
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l~ 74 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLVQ 74 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 57778888999999999999999887643
No 95
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.61 E-value=10 Score=33.79 Aligned_cols=28 Identities=25% Similarity=0.457 Sum_probs=23.4
Q ss_pred EEEEecccccceeeccCchHHHHHHHHh
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNET 79 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~t 79 (424)
.+|.|....-|.|||++|+.|++|+...
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4677788889999999999999987653
No 96
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=37.67 E-value=13 Score=33.84 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=24.9
Q ss_pred EEEEEecccccceeeccCchHHHHHHHHh
Q 014452 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNET 79 (424)
Q Consensus 51 ~~ri~ip~~~vg~IIGk~G~~Ik~I~~~t 79 (424)
.++|.|....-|.|||++|+.|++|++..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 35778888999999999999999988764
No 97
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=35.06 E-value=10 Score=34.21 Aligned_cols=30 Identities=10% Similarity=0.296 Sum_probs=25.3
Q ss_pred EEEEEecccccceeeccCchHHHHHHHHhC
Q 014452 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNETG 80 (424)
Q Consensus 51 ~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tg 80 (424)
..+|.|....-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l~ 74 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVVQ 74 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHHH
Confidence 357788889999999999999999887643
No 98
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=34.90 E-value=38 Score=29.17 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=44.5
Q ss_pred EEEEeccCcccceeccccc-hHHHHHHHhCCEEEEeCCCCCCCCcEEEEEc-CHHHHHHHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNS-NLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHA 416 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~-~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I~G-t~e~v~~A~~lI~~ 416 (424)
.-+.|+..++.+++|+.++ .++.|.+.+++.|.+.. .-.|=|.+ +++..-.+...|+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~------NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL------NGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET------TTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC------CcEEEEecCCHHHHHHHHHHHHH
Confidence 4588999999999999999 89999999999999952 23566775 66555555456655
No 99
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=33.93 E-value=63 Score=28.99 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=41.0
Q ss_pred EEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHH
Q 014452 137 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHI 202 (424)
Q Consensus 137 ~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I 202 (424)
-+.++...+.+++|+++..++.|.+.+++.|.+-. +-.|-|.+.......+...|
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHH
Confidence 45678888889999999999999999999997732 23477888776444444444
No 100
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.98 E-value=11 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=25.3
Q ss_pred EEEEecccccceeeccCchHHHHHHHH----hCceEEe
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNE----TGASIKI 85 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~----tga~I~v 85 (424)
++|.|....-|.|||++|+.|++|+.+ ++..+++
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 356677788899999999999988764 5544443
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.14 E-value=12 Score=34.07 Aligned_cols=30 Identities=10% Similarity=0.255 Sum_probs=25.4
Q ss_pred EEEEEecccccceeeccCchHHHHHHHHhC
Q 014452 51 VFKLLCHLDKVGSLIGKGGSIVRTFQNETG 80 (424)
Q Consensus 51 ~~ri~ip~~~vg~IIGk~G~~Ik~I~~~tg 80 (424)
..+|.|....-|.|||++|+.|++|+++..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L~ 74 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 74 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHHH
Confidence 457778888999999999999999888643
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=30.34 E-value=23 Score=33.13 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=27.4
Q ss_pred cEEEEEEecc-cccceeeccCchHHHHHHH--------HhCceEEe
Q 014452 49 EVVFKLLCHL-DKVGSLIGKGGSIVRTFQN--------ETGASIKI 85 (424)
Q Consensus 49 ~~~~ri~ip~-~~vg~IIGk~G~~Ik~I~~--------~tga~I~v 85 (424)
.+...|+|.. ++.+.||||+|+.||+|.. ..+++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4556677776 4678899999999997644 46666666
No 103
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=30.31 E-value=19 Score=32.77 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=22.5
Q ss_pred EEEEeccCcccceeccccchHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
.+|.|-...-|.|||++|..|++|+..
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 667777788899999999999887654
No 104
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=29.62 E-value=12 Score=33.91 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.3
Q ss_pred EEEEecccccceeeccCchHHHHHHHH
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNE 78 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~ 78 (424)
++|.|....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456677788899999999999988764
No 105
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=28.51 E-value=87 Score=28.12 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=41.3
Q ss_pred EEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCCCCCCCCCCCCcEEEEEeC-HHHHHHHHHHHH
Q 014452 136 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-YHSVQDALFHIT 203 (424)
Q Consensus 136 ~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~~~p~~~~~~~r~v~I~G~-~~~v~~A~~~I~ 203 (424)
+-+.++...+.+++|+++..+..|.+.++++|.+-. +..|-|.+. .+.+..+...|.
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~~~ai~ 207 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIAVMAIK 207 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHHHHHHH
Confidence 345678888999999999999999999999997742 335778764 444444444443
No 106
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=28.28 E-value=57 Score=25.32 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=35.5
Q ss_pred cchHHHHHHHhCCEEEEeC----CCCCC--CCcEEEEEcCHHHHHHHHHHHHHH
Q 014452 370 NSNLSHIRQISGANVVVND----PKPGA--TEGVVMVSGTSDQMRAAQSLIHAF 417 (424)
Q Consensus 370 G~~Ik~Ir~~SGa~I~i~~----~~~~~--~~r~i~I~Gt~e~v~~A~~lI~~~ 417 (424)
.-.|.+|-++++..+.|-. .-.+. ..=+|.+.|+.+++++|...|.+.
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 3488999999999999852 11111 123678899999999999988764
No 107
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.86 E-value=18 Score=32.22 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=25.6
Q ss_pred EEEEeccCcccceeccccchHHHHHH----HhC---CEEEEe
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQ----ISG---ANVVVN 387 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~----~SG---a~I~i~ 387 (424)
.+|.|-...-|.|||++|..|++|+. .++ .+|.|.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 45666667789999999999988765 466 445553
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=27.15 E-value=30 Score=32.36 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=28.6
Q ss_pred ceEEEEEeccCcc-cceeccccchHHHHH--------HHhCCEEEEe
Q 014452 350 STTIEVVIPQLYM-AHVYGENNSNLSHIR--------QISGANVVVN 387 (424)
Q Consensus 350 ~~t~~v~IP~~~~-g~IIGk~G~~Ik~Ir--------~~SGa~I~i~ 387 (424)
.+...+.|..+.. +-|||++|+.||+|. +..|++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 4667777887544 889999999998764 4577777764
No 109
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=26.97 E-value=23 Score=32.23 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.5
Q ss_pred EEEEEeccCcccceeccccchHHHHHHH
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
..+|.|-...-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4667777788899999999999988764
No 110
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=26.73 E-value=19 Score=32.77 Aligned_cols=27 Identities=33% Similarity=0.699 Sum_probs=22.2
Q ss_pred EEEEecccccceeeccCchHHHHHHHH
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNE 78 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~ 78 (424)
++|.|....-|.|||++|+.|++|+++
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 355666778899999999999988775
No 111
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=25.86 E-value=39 Score=29.12 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=24.9
Q ss_pred ceEEEEEeccCcccceeccccchHHHH-HHHh
Q 014452 350 STTIEVVIPQLYMAHVYGENNSNLSHI-RQIS 380 (424)
Q Consensus 350 ~~t~~v~IP~~~~g~IIGk~G~~Ik~I-r~~S 380 (424)
.....|.||++..|.+|| .+|++| ++++
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 467889999999999999 689995 9999
No 112
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.53 E-value=19 Score=32.48 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEEEEeccCcccceeccccchHHHHHHH
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4677787888899999999999887654
No 113
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.33 E-value=17 Score=32.67 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=23.0
Q ss_pred EEEEecccccceeeccCchHHHHHHHHhC
Q 014452 52 FKLLCHLDKVGSLIGKGGSIVRTFQNETG 80 (424)
Q Consensus 52 ~ri~ip~~~vg~IIGk~G~~Ik~I~~~tg 80 (424)
++|.|....-|.|||++|+.|++|+++-.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l~ 100 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINVQ 100 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHHH
Confidence 45566777789999999999999887643
No 114
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=24.30 E-value=3.7e+02 Score=23.79 Aligned_cols=105 Identities=16% Similarity=0.132 Sum_probs=57.2
Q ss_pred cEEEeecccccccccChhHHHHHHHHHHHHhhcCCCC-cceEEEEEecCCCcceeeccCCchHHHHHhhcCceEEEecCC
Q 014452 95 RIVVISARENSEMRHSPAQDAVMRVHSRIAEIGFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 173 (424)
Q Consensus 95 r~v~I~G~~~~~~~~~~a~~av~~~~~~i~e~~~~~~-~~~t~~l~IP~~~vg~IIGkgG~~Ik~I~~~tga~I~v~~~~ 173 (424)
-.++++|.....+ +..++.++...+.+.+++.. ..++++-.|-.-.++.= -++..|....+..+...| +
T Consensus 97 GKiV~TGAkS~e~----a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~-----I~Le~la~~~~~~~~YEP-E 166 (218)
T 3eik_A 97 GKMVITGAKSEKS----SRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFS-----IRLEGLAYAHSNYCSYEP-E 166 (218)
T ss_dssp SEEEEEEESSHHH----HHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSC-----BCHHHHHHHSTTTEECCT-T
T ss_pred CeEEEEecCCHHH----HHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCc-----CcHHHHHHhccCCcEECC-c
Confidence 3366666543222 45677777777777666432 23444433433222222 245666655444443322 1
Q ss_pred CCCCC----C-------CCCCcEEEEEeC--HHHHHHHHHHHHHHHHhh
Q 014452 174 QAPRC----G-------SPHDEIVQVIGN--YHSVQDALFHITSRLRET 209 (424)
Q Consensus 174 ~~p~~----~-------~~~~r~v~I~G~--~~~v~~A~~~I~~~l~~~ 209 (424)
..|.. . --..-.|+|+|. .+.+..|...|..+|.++
T Consensus 167 ~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 167 LFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp TSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 22210 0 012245889995 789999999999999886
No 115
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=23.31 E-value=25 Score=31.70 Aligned_cols=67 Identities=10% Similarity=0.018 Sum_probs=40.5
Q ss_pred EEEEEeccCcccceeccccchHHHHHHHhCCEEEEeCCCCCCCCcEEEE-EcCH------HHHHHHHHHHHHHHHcCc
Q 014452 352 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV-SGTS------DQMRAAQSLIHAFILCGV 422 (424)
Q Consensus 352 t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~SGa~I~i~~~~~~~~~r~i~I-~Gt~------e~v~~A~~lI~~~i~~~~ 422 (424)
+..|.|..+-.|.+|||.|.+++.|+..+...+.- .. + ....|+| .+.. .=.+.|+.+......+|.
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~--~~-~-~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~~tg~ 166 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNK--SS-S-DYIRVKLDTENYRERRKETLETLAKNIAYKVKRTKR 166 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHH--TC-S-SCCEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHh--cC-C-CceEEEEecchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45666667778999999999999999887433322 11 1 1112222 2222 234556666666666664
No 116
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=22.08 E-value=48 Score=28.47 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=25.2
Q ss_pred ccEEEEEEecccccceeeccCchHHHHH-HHHh
Q 014452 48 EEVVFKLLCHLDKVGSLIGKGGSIVRTF-QNET 79 (424)
Q Consensus 48 ~~~~~ri~ip~~~vg~IIGk~G~~Ik~I-~~~t 79 (424)
-++...|.||.+..|.+|| .+|+++ ++++
T Consensus 5 ~~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~ 34 (187)
T 1go3_E 5 LEIADVVKVPPEEFGKDLK---ETVKKILMEKY 34 (187)
T ss_dssp EEEEEEEEECGGGTTSCHH---HHHHHHHHHHH
T ss_pred EEEEEEEEECHHHhCccHH---HHHHHHHHHHh
Confidence 3566789999999999998 699995 9999
No 117
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.48 E-value=24 Score=32.17 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.1
Q ss_pred eEEEEEeccCcccceeccccchHHHHHHH
Q 014452 351 TTIEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 351 ~t~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
...+|.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35677777788899999999999998765
No 118
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=20.97 E-value=20 Score=31.81 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=25.5
Q ss_pred EEEEeccCcccceeccccchHHHHHH----HhCCEEEEe
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQ----ISGANVVVN 387 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~----~SGa~I~i~ 387 (424)
.+|.|-...-|.|||++|+.|++|+. .++..+.|.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 34555566778999999999988764 567665554
No 119
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=20.32 E-value=32 Score=31.23 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=20.8
Q ss_pred EEEEeccCcccceeccccchHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
++|.|-...-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 345555667799999999999888754
No 120
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.13 E-value=28 Score=31.15 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=20.8
Q ss_pred EEEEeccCcccceeccccchHHHHHHH
Q 014452 353 IEVVIPQLYMAHVYGENNSNLSHIRQI 379 (424)
Q Consensus 353 ~~v~IP~~~~g~IIGk~G~~Ik~Ir~~ 379 (424)
++|.|-...-|.|||++|..|++|++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 445555667799999999999888654
Done!