BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014453
(424 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/425 (66%), Positives = 336/425 (79%), Gaps = 1/425 (0%)
Query: 1 MQSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLY 60
+ S+E ++T IQGLS + D++AL D L+ A+D LR+E S LDQLD SKHSLGYLY
Sbjct: 5 VNSVEAVITSIQGLSGSPEDLSALHDLLRGAQDSLRAEPGVNFSTLDQLDASKHSLGYLY 64
Query: 61 FLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIR 120
FLE ++KE+A +PIIARFI SC A QIR KF+++CK KD V+ L P+R
Sbjct: 65 FLEVLTCGPVSKEKAAYEIPIIARFINSCDAGQIRLASYKFVSLCKILKDHVIALGDPLR 124
Query: 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC 180
GVGP+L A++K+Q S++ LT LHP+ LQLCL AK YK+G S+L DDI EI+ PRDFFLY
Sbjct: 125 GVGPLLNAVQKLQVSSKRLTALHPDVLQLCLQAKSYKSGFSILSDDIVEIDQPRDFFLYS 184
Query: 181 YYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
YYGGMI IG KRF+KALELL+NVVTAPM +NAIA+EAYKKYILVSLIH+GQF++TLPK
Sbjct: 185 YYGGMICIGLKRFQKALELLYNVVTAPMHQVNAIALEAYKKYILVSLIHNGQFTNTLPKC 244
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
S+AAQR+ KN++ PY+EL N YN GKI ELE V +FE D NLGLVKQ VSS+YK
Sbjct: 245 ASTAAQRSFKNYTGPYIELGNCYNDGKIGELEALVVARNAEFEEDKNLGLVKQAVSSLYK 304
Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDP 360
RNI RLTQ YLTLSLQDIAN VQL ++KEAEMHVLQMIQDG+I A INQKDGMVRFLEDP
Sbjct: 305 RNILRLTQKYLTLSLQDIANMVQLGNAKEAEMHVLQMIQDGQIHALINQKDGMVRFLEDP 364
Query: 361 EQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDF-DDFDSVP 419
EQYK+ EMIE +DS IQR + LSK L AMDE +SCDPLYLGK GRERQR+DF DDFD+VP
Sbjct: 365 EQYKSSEMIEIMDSVIQRTIGLSKNLLAMDESLSCDPLYLGKVGRERQRYDFGDDFDTVP 424
Query: 420 QKFNI 424
QKF++
Sbjct: 425 QKFSM 429
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 304 bits (779), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 304 bits (779), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 304 bits (778), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVSKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3
PE=2 SV=1
Length = 423
Score = 303 bits (777), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 174/427 (40%), Positives = 254/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVLRQAIDKMQMNANQLTSIHADLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ ++EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + R + L +L AMD+ I+ +P ++ K+ + DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLRCIDLDDRLKAMDQEITVNPQFVQKSMGSQD----DDSG 416
Query: 417 SVPQKFN 423
S P ++
Sbjct: 417 SKPSSYS 423
>sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2
SV=1
Length = 423
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 173/427 (40%), Positives = 254/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LSS +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSSQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q + LT++H + QL LLAKC+K L+ L+ D+ +I N D F
Sbjct: 122 CVIRQAIDKMQMNANQLTSIHGDLCQLSLLAKCFKPALAYLDVDMMDICKENGAYDAKPF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +A+ +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERAMYFYEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQVVGRFIKPLSNAYHELAQVYSTNNPAELRNLVSKHNETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ ++EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGAQEAEKYVLYMIEDGEIFASINQKDGMVCF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
+ PE+Y M+ +ID + R + L +L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDSPEKYNNPAMLHNIDQEMLRCIDLDDRLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
S P ++
Sbjct: 417 SKPSSYS 423
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/427 (40%), Positives = 257/427 (60%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSVPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
G + AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 GVLRQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPALPYLDVDMVDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGM++ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMVYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T EL + V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRSLVTKHSEIFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 NKPSSYS 423
>sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2
SV=1
Length = 423
Score = 302 bits (774), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/427 (40%), Positives = 256/427 (59%), Gaps = 13/427 (3%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNSVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ + TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPSIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K L L+ D+ +I N D F
Sbjct: 122 SILRQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +E+YKKYILVSLI G+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y+T K EL V + E F DNN+GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQVYSTNKPSELRNLVNKHSETFTRDNNMGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEIFA+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVCF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKAGRERQRFDFDDFD 416
++PE+Y M+ +ID + + + L ++L AMD+ I+ +P ++ K+ ++ DD
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQE----DDSG 416
Query: 417 SVPQKFN 423
+ P ++
Sbjct: 417 TKPSSYS 423
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 301 bits (772), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 244/407 (59%), Gaps = 9/407 (2%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++E V ++ LS+ +T L + + + +LL + L + L LD +HSLG L L
Sbjct: 4 ALEQFVNNVRQLSAQGQ-MTQLCELINKSGELLAKNLSHLDTVLGALDIQEHSLGVLAVL 62
Query: 63 EPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGV 122
+ TL + FI++C+ E IRY + F +C + + ++ + P+RG+
Sbjct: 63 F-VKFSMPNIPDFETLFSQVQLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGI 121
Query: 123 GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRD---F 176
+ AI K+Q +T LT++H + QLCLLAKC+K + LE D+ +I N D F
Sbjct: 122 SILKQAIDKMQMNTNQLTSVHADLCQLCLLAKCFKPAVPFLELDMMDICKENGAYDAKHF 181
Query: 177 FLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSST 236
Y YYGGMI+ G K F +AL +T P +++ I +EAYKKYILVSLI HG+
Sbjct: 182 LCYYYYGGMIYTGLKNFERALYFFEQAITTPAMAVSHIMLEAYKKYILVSLILHGKVQQ- 240
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
LPKYTS R +K S Y EL Y T EL V + E F DNN GLVKQ +S
Sbjct: 241 LPKYTSQIVGRFIKPLSNAYHELAQIYATNNPAELRALVNKHSETFTRDNNTGLVKQCLS 300
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
S+YK+NIQRLT+T+LTLSLQD+A+ VQL+ +EAE +VL MI+DGEI+A+INQKDGMV F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQKDGMVCF 360
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYLGKA 403
++PE+Y M+ ID + + + L +KL +MD+ I+ +P ++ K+
Sbjct: 361 HDNPEKYNNPAMLHKIDQEMLKCIELDEKLKSMDQEITVNPQFVQKS 407
>sp|Q54E53|CSN3_DICDI COP9 signalosome complex subunit 3 OS=Dictyostelium discoideum
GN=csn3 PE=1 SV=1
Length = 418
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 155/387 (40%), Positives = 223/387 (57%), Gaps = 13/387 (3%)
Query: 24 LKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIA 83
LK+ LK E L R + L + L LD HSLG L L+ S + + +
Sbjct: 16 LKNLLKYEEQLER-QHVSLDNILGALDVRNHSLGQLLVLK--AKGSDQGKNRSVFIDQCN 72
Query: 84 RFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS--TEHLTT 141
F +C+ EQ+R P + + K Y + + L+ PIRGV + A+ + + T LT
Sbjct: 73 NFFRNCNVEQVRLAPAQLSQLSKFYTEALYELKQPIRGVAVLKDALNILSDNKPTTTLTP 132
Query: 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------RDFFLYCYYGGMIFIGQKRFRK 195
+H +FLQLC+L+KCY L ++E +I IN +D Y YY G+IF K+++K
Sbjct: 133 IHTDFLQLCILSKCYHQALPLIESNITHINPEQSSIAIKDILCYFYYSGIIFTAFKKYKK 192
Query: 196 ALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP 255
A+E V+TAP S+++AI VEAYKKY++V LI G PK T + QRN+K+ +P
Sbjct: 193 AIEAFKFVITAPASALSAITVEAYKKYLIVYLIQFGSVQH-FPKCTPAVVQRNIKSHCKP 251
Query: 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSL 315
Y E V +++ G I ++ + E F+ D+N GLVK + S Y+RNI++LTQT++TLS+
Sbjct: 252 YTEFVQSFSNGNINDIMNKASSGAEFFQKDSNWGLVKLSIKSTYRRNIKKLTQTFMTLSI 311
Query: 316 QDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSS 375
DIA V L +K AE VL+MI++GEIFATINQKDGMV F E E + ++ +D +
Sbjct: 312 NDIAEKVSLPKAK-AEQFVLKMIEEGEIFATINQKDGMVTFDECFEDFSGPTILNDLDRN 370
Query: 376 IQRIMSLSKKLTAMDELISCDPLYLGK 402
I I+ L K+ MDE IS YL K
Sbjct: 371 INNIVGLESKIKEMDEKISLSNNYLKK 397
>sp|Q8SYG2|CSN3_DROME COP9 signalosome complex subunit 3 OS=Drosophila melanogaster
GN=CSN3 PE=2 SV=2
Length = 445
Score = 243 bits (619), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 152/423 (35%), Positives = 232/423 (54%), Gaps = 25/423 (5%)
Query: 3 SIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFL 62
++EN V Q++ LS++ S L + L + LL + L + L+ LD +HSLG LY L
Sbjct: 4 ALENYVNQVRTLSASGS-YRELAEELPESLSLLARNWSILDNVLETLDMQQHSLGVLYVL 62
Query: 63 EPCMY-CSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAPIRG 121
++ S L+ ++ F+ + EQ+RY F C + + V+ I G
Sbjct: 63 LAKLHSASTANPEPVQLIQLMRDFVQRNNNEQLRYAVCAFYETCHLFTEFVVQKNLSILG 122
Query: 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----------- 170
+ + AI +I+ LT +H + L L AK + L L+ DI +I
Sbjct: 123 IRIISRAIDQIRQLETQLTPIHADLCLLSLKAKNFSVVLPYLDADITDISTVAAECKTQQ 182
Query: 171 ----------NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYK 220
N + F LY YYGGMI+ K + +AL +T P +++ I +EAYK
Sbjct: 183 QQQSQHADANNDAKYFLLYFYYGGMIYTAVKNYERALYFFEVCITTPAMAMSHIMLEAYK 242
Query: 221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280
K+++VSLI G+ + +PK T R +K + Y +LVN Y EL + E
Sbjct: 243 KFLMVSLIVEGKIA-YIPKNTQVIG-RFMKPMANHYHDLVNVYANSSSEELRIIILKYSE 300
Query: 281 KFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQD 340
F DNN+GL KQV +S+YKRNIQRLT+T+LTLSL D+A+ VQL S+ EAE ++L MI+
Sbjct: 301 AFTRDNNMGLAKQVATSLYKRNIQRLTKTFLTLSLSDVASRVQLASAVEAERYILNMIKS 360
Query: 341 GEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYL 400
GEI+A+INQKDGMV F +DPE+Y + EM ++ ++I ++ +++ M+E I +P+Y+
Sbjct: 361 GEIYASINQKDGMVLFKDDPEKYNSPEMFLNVQNNITHVLDQVRQINKMEEEIILNPMYV 420
Query: 401 GKA 403
KA
Sbjct: 421 KKA 423
>sp|Q5B0Y2|CSN3_EMENI COP9 signalosome complex subunit 3 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnC PE=1 SV=2
Length = 496
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 94/379 (24%), Positives = 167/379 (44%), Gaps = 54/379 (14%)
Query: 44 SFLDQLDPSKHSLGYLYFL---------EPCMYCSITKERANTLVPIIARFITSCSAEQI 94
+L+ + P+ HSL YLY L + + + TL +F+ S QI
Sbjct: 51 GYLEAISPAVHSLSYLYLLRIRIQQLQEKTAVGVPNDLQPGGTLWNQTVKFLRSFDPIQI 110
Query: 95 RYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK 154
RYV ++ + + L + PI V + A+ ++ ++ T+LH ++L LL+
Sbjct: 111 RYVGHEWRELVDSVANAALSVSKPILAVKMIRDALERLNTAGV-FTSLHLMLVKLALLSS 169
Query: 155 CYKAGLSVLEDDI--------------------------------YEINLP-RDFFLYCY 181
Y L VL+ + + NL RD +
Sbjct: 170 SYTYVLPVLDKLLCHFPSDTQNAHAGILLCSEHEPSTVFFTDSSGFSANLTYRDHLQFYM 229
Query: 182 YGGMIFIGQKRFRKALELLHNVVTAPMS-SINAIAVEAYKKYILVSLIHHGQFSSTLPKY 240
Y GM+++ K++ +A L V++AP + S++ I VEAYKK++L +L+ HG+ S +P
Sbjct: 230 YSGMVYMALKKWDQASHCLGIVISAPTANSVSKIMVEAYKKWVLANLLGHGKLFS-VPNL 288
Query: 241 TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYK 300
+ R ++ S+PY+ L + L T + + + +D N GLV QV + K
Sbjct: 289 VAPHVTRVYQSLSKPYISLAEAFEKRDFQRLRTEISLGQTIWRADKNSGLVYQVFEAYDK 348
Query: 301 RNIQRLTQTYLTLSLQDIANTVQLNS--SKEAEMHVLQMIQDGEIFATINQKDG-----M 353
I +L +T+ L++ D+ S S++ E V+ ++ E+ A ++ G M
Sbjct: 349 FLIIKLGKTFSALTMPDVLQRASSCSKGSRDIEEFVVSLVMTKELRAKLSHSPGNETTTM 408
Query: 354 VRFLEDPEQYKTCEMIEHI 372
+RF + + E EHI
Sbjct: 409 LRFPLSSQSHALRE--EHI 425
>sp|Q7S7G7|CSN3_NEUCR COP9 signalosome complex subunit 3 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-3 PE=1 SV=2
Length = 497
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 170/403 (42%), Gaps = 50/403 (12%)
Query: 46 LDQLDPSKHSLGYLYFLEPCMYC-SITKERAN-TLVPIIARFITSCSAEQIRYVPEKFIN 103
L ++P+ +SL YL LE + T ++A+ +L +A+F A QIR + +
Sbjct: 52 LKHVNPAVYSLSYLMILEFLLQSPGWTSQQAHESLASYMAQFFLQFDARQIRCKGSTWSD 111
Query: 104 VCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
V K + L A + V + A+ ++ S +T+ H ++L A L ++
Sbjct: 112 VLKEAYSERGLFPASV-AVELVTAALLRLDPSGSIITSHHCNLVELAYNTGNVGALLPLI 170
Query: 164 EDDIY--------------EINLPRDFFL-----------------YCYYGGMIFIGQKR 192
E I +++LP ++ Y + G+ FI ++
Sbjct: 171 EKPIIYMPAKGMSTAQPLCDMSLPPPAYINPDSQLTDALTSAAVLQYDFLCGLCFIERRM 230
Query: 193 FRKALELLHNVVTAPM--SSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK 250
+++A + VT P + I EAY K+ILV L+ G+ TLP+ TS AA++
Sbjct: 231 WQQAFDAFERCVTYPTRDGGCSKIMTEAYNKWILVGLLLTGK-PPTLPETTSQAAKKIFA 289
Query: 251 NFSQPYMELVNTYNTGKIVEL-ETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQT 309
+PY + + +L + N E ++ N+ L K V++ + I L
Sbjct: 290 TQGKPYKLFAQAFKSETAGDLVREFEVINSELLPNEGNVELAKLVLAHYQRWQIINLRNI 349
Query: 310 YLTLSLQDIANTVQ-------LNSSKEAEMHVLQMIQDGEIFATINQ-KDG---MVRFLE 358
Y +SL+ I Q L + + + V MI DG + I + KDG + FL
Sbjct: 350 YTNISLEKIQERTQSAETGAPLPTVEAVDQLVQSMIADGSLQGAIERPKDGSPAYLTFLS 409
Query: 359 DPEQYKT-CEMIEHIDSSIQRIMSLSKKLTAMDELISCDPLYL 400
P Q + E ++ +Q I +L + A ++ ++ + Y+
Sbjct: 410 SPAQGMSEVEFSAQVNKVMQGIKALEPIIEATNKRLASNREYI 452
>sp|P68358|CSN3_BRAOL COP9 signalosome complex subunit 3 (Fragments) OS=Brassica oleracea
GN=CSN3 PE=1 SV=1
Length = 55
Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/37 (91%), Positives = 35/37 (94%)
Query: 328 KEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYK 364
KEAEMHVLQMIQDG+I A INQKDGMVRFLEDPEQYK
Sbjct: 19 KEAEMHVLQMIQDGQIHALINQKDGMVRFLEDPEQYK 55
>sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus
GN=PSMD3 PE=2 SV=1
Length = 534
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 284 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 342
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 343 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIR 397
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGM 353
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + I+DG I A+IN + G
Sbjct: 398 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGY 457
Query: 354 VRFLEDPEQYKTCE 367
V+ E + Y T E
Sbjct: 458 VQSKEMIDIYSTRE 471
>sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus
GN=Psmd3 PE=1 SV=3
Length = 530
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 280 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 338
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 339 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQTDGTYTLIIR 393
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGM 353
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + I+DG I A+IN + G
Sbjct: 394 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGY 453
Query: 354 VRFLEDPEQYKTCE 367
V+ E + Y T E
Sbjct: 454 VQSKEMIDIYSTRE 467
>sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens
GN=PSMD3 PE=1 SV=2
Length = 534
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 7/194 (3%)
Query: 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQF 233
++ Y YY G I Q + +A + N + AP + +K I+V L+ G+
Sbjct: 284 EWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLL-GEI 342
Query: 234 SSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQ 293
L Q +LK PY L TG + + + EKF++D L+ +
Sbjct: 343 PDRL-----QFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIR 397
Query: 294 VVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGM 353
+ ++ K ++ ++ +Y +SL DIA +QL+S ++AE V + I+DG I A+IN + G
Sbjct: 398 LRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGY 457
Query: 354 VRFLEDPEQYKTCE 367
V+ E + Y T E
Sbjct: 458 VQSKEMIDIYSTRE 471
>sp|Q9N425|CSN3_CAEEL COP9 signalosome complex subunit 3 OS=Caenorhabditis elegans
GN=csn-3 PE=1 SV=4
Length = 501
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQ 232
P+ Y Y G I I KRF AL LL V P S+ ++++KKY+L+SLI G+
Sbjct: 256 PKYVLDYLYNGACILIELKRFEDALFLLEICVGMPAFSVQDQHLDSFKKYVLISLILKGK 315
Query: 233 FSSTLPKYTSSAAQRNLKNFSQPY-----MELVNTYNTGKIVELETYVQTNREKFESDNN 287
T + +A R+ K S Y + + NT V E+ V++ +++ D N
Sbjct: 316 VDVT--ENGDKSAIRHFKTKSPEYKQFSEIRFSRSSNTHSAV--ESLVKSAKDRLRKDGN 371
Query: 288 LGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATI 347
+ K +V M K+ I LT+ + ++ + +I L S + + Q++++ I I
Sbjct: 372 TEIAKYLVVEMKKKTIMSLTRMFTSIRISEIEELAFLKSRDQVTELIGQLVEEQRITVRI 431
Query: 348 N 348
+
Sbjct: 432 D 432
>sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium
discoideum GN=psmD3 PE=1 SV=1
Length = 504
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Query: 176 FFLYCYYGGMIFIGQKRFRKALELLHNVV-TAPMSSINAIAVEAYKKYILVSLIHHGQFS 234
F Y YY G I Q + ++ + L + AP ++ YK +V L+
Sbjct: 253 FARYFYYQGRIRAIQLEYAESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLM----- 307
Query: 235 STLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
+P+ ++ +Q+ LK +PY L G + ++ N + F+SD LV+++
Sbjct: 308 GEIPE-RNTFSQKQLKIALKPYFHLTEAVRVGDLGSFNQALEQNSDIFKSDQTFTLVQRL 366
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL-QMIQDGEIFATINQKDGM 353
S++ K +++L Y +S DI ++ + + + M ++ + I+DG I ATIN + G
Sbjct: 367 RSNVIKAGLKKLNTAYSRISFNDICTKLKFDGTTQDIMFIIAKTIKDGVIDATINYEGGY 426
Query: 354 VRFLEDPEQYKTCE 367
++ E+ + Y T E
Sbjct: 427 LQSRENIDAYSTQE 440
>sp|Q9LQR8|PSD32_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3b
OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2
Length = 487
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 13/205 (6%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++S+ ++ K I+V
Sbjct: 230 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASL-GFRIQCNKWAIIVR 288
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREK-FESD 285
L+ +P+ S Q+ ++ +PY EL N G + EL +Q K F D
Sbjct: 289 LL-----LGEIPE-RSIFTQKGMEKTLRPYFELTNAVRIGDL-ELFGKIQEKFAKTFAED 341
Query: 286 NNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSK---EAEMHVLQMIQDGE 342
L+ ++ ++ + ++ ++ +Y +SLQD+A ++LNS+ +AE V + I+DG
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGA 401
Query: 343 IFATINQKDGMVRFLEDPEQYKTCE 367
I ATI+ K+G + E + Y T E
Sbjct: 402 IDATIDHKNGCMVSKETGDIYSTNE 426
>sp|Q9LNU4|PSD31_ARATH Probable 26S proteasome non-ATPase regulatory subunit 3a
OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3
Length = 488
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 98/204 (48%), Gaps = 11/204 (5%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP++++ ++ K ILV
Sbjct: 231 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAAL-GFRIQCNKWAILVR 289
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN 286
L+ +P+ S Q+ ++ +PY EL N G + T + + F D
Sbjct: 290 LL-----LGEIPE-RSIFTQKGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDR 343
Query: 287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSK---EAEMHVLQMIQDGEI 343
L+ ++ ++ + ++ ++ +Y +SL D+A ++LNS +AE V + I+DG I
Sbjct: 344 THNLIVRLRHNVIRTGLRNISISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAI 403
Query: 344 FATINQKDGMVRFLEDPEQYKTCE 367
ATI+ K+G + E + Y T E
Sbjct: 404 DATIDHKNGCMVSKETGDIYSTNE 427
>sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Nicotiana tabacum GN=21D7 PE=2 SV=1
Length = 488
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 11/204 (5%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E LL AP +++ V+ K I+V
Sbjct: 231 FEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAAL-GFRVQCNKWAIIVR 289
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN 286
L+ +P+ T Q+ ++ +PY EL N G + + F SD
Sbjct: 290 LL-----LGEIPERTV-FMQKGMEKALRPYFELTNAVRIGDLELFRKVAEKFSSTFSSDG 343
Query: 287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSK---EAEMHVLQMIQDGEI 343
L+ ++ ++ + ++ ++ +Y +SL D+A ++L+S +AE V + I+DG I
Sbjct: 344 TNNLIVRLRHNVIRTGLRNISISYSRISLVDVAKKLRLDSPNPVADAESIVSKAIRDGAI 403
Query: 344 FATINQKDGMVRFLEDPEQYKTCE 367
AT++ +G + E + Y T E
Sbjct: 404 DATLDHANGWMVSKETGDIYSTNE 427
>sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1
Length = 500
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 13/193 (6%)
Query: 179 YCYYGGMIFIGQKRFRKA-LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
+ YY G I + + A +L+ + AP + K I+V L+ +
Sbjct: 255 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELL-----LGDI 309
Query: 238 PK---YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
P+ + +A +R+L PY +L G + ++ E+F D+ L+ ++
Sbjct: 310 PERKVFRQAALRRSLG----PYFQLTQAVRMGNLQRFGEVLENFGEQFRQDHTFTLIIRL 365
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMV 354
++ K I+ + Y +S QDIA + L+S ++AE V + I+DG I AT++ + G +
Sbjct: 366 RHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIDATLDPEKGYM 425
Query: 355 RFLEDPEQYKTCE 367
R E + Y T E
Sbjct: 426 RTKESTDIYSTRE 438
>sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2
Length = 496
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 13/193 (6%)
Query: 179 YCYYGGMIFIGQKRFRKA-LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTL 237
+ YY G I + + A +L+ + AP + K I+V L+ +
Sbjct: 251 FLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELL-----LGDI 305
Query: 238 PK---YTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQV 294
P+ + +A +R+L PY +L G + + E+F D+ L+ ++
Sbjct: 306 PERKVFRQAALRRSLG----PYFQLTQAVRMGNLQRFGEVLVNFGEQFRQDHTFTLIIRL 361
Query: 295 VSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMV 354
++ K I+ + Y +S QDIA + L+S ++AE V + I+DG I AT++ + G +
Sbjct: 362 RHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEFIVAKAIRDGVIEATLDPEKGYM 421
Query: 355 RFLEDPEQYKTCE 367
R E + Y T E
Sbjct: 422 RSKESTDIYSTRE 434
>sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis
elegans GN=rpn-3 PE=1 SV=1
Length = 504
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/264 (23%), Positives = 113/264 (42%), Gaps = 54/264 (20%)
Query: 149 LCLLAKCY------KAGLSVLEDDIYEINLPR-DFFLYCYYGGMIFIGQKRFRKALELLH 201
+C L +CY ++ ++ + N D Y YY G I KAL+L +
Sbjct: 219 ICWLLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQGRI--------KALQLDY 270
Query: 202 NVVT---------APMSSINAIAV-EAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 251
N AP AI +A +K+++V + G+ +P +
Sbjct: 271 NSAAGYFLQAQRKAPQEG--AIGFKQAVQKWVVVIGLLQGE----IPDRSV--------- 315
Query: 252 FSQP--------YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNI 303
F QP Y++L G + ++ + +FE+D+ L L+ ++ ++ K I
Sbjct: 316 FRQPIYRKCLAHYLDLSRGVRDGDVARFNHNLEQFKTQFEADDTLTLIVRLRQNVIKTAI 375
Query: 304 QRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ--KDGMVRFLEDPE 361
++++ Y + ++DIA + + + E E V + I DG I A I +DG R+++ E
Sbjct: 376 KQISLAYSRIYIKDIAKKLYITNETETEYIVAKAIADGAIDAVITSDVRDGP-RYMQSSE 434
Query: 362 Q---YKTCEMIEHIDSSIQRIMSL 382
Y+T E H D+ I+ + L
Sbjct: 435 TADIYRTSEPQAHFDTRIRYCLEL 458
>sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus
carota GN=21D7 PE=1 SV=2
Length = 489
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 96/213 (45%), Gaps = 11/213 (5%)
Query: 168 YEINLPRDFFLYCYYGGMIFIGQKRFRKALE-LLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E + + F Y +Y G I Q + A E L AP++++ V+ K ++V
Sbjct: 232 FEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAAL-GFRVQCNKWAVIVR 290
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDN 286
L+ +P+ T Q+ ++ +PY L N G + F +D
Sbjct: 291 LL-----LGEIPERTVFM-QKGMEKALRPYFXLTNAVRIGDLELFRXVADKFASTFTADR 344
Query: 287 NLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSK---EAEMHVLQMIQDGEI 343
L+ ++ ++ + ++ ++ +Y +SL D+A ++L+S +AE V + I+DG I
Sbjct: 345 THNLIVRLRHNVIRTGLRNISISYSRISLVDVARKLRLDSPNPVADAESIVSKAIRDGAI 404
Query: 344 FATINQKDGMVRFLEDPEQYKTCEMIEHIDSSI 376
ATI+ +G + E + Y T E +S I
Sbjct: 405 DATIDHANGWMVSKETGDIYSTNEPQAAFNSRI 437
>sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3
OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1
Length = 494
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 246 QRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQR 305
Q L+ Y +L G + V KF+ D+ L+ ++ ++ K I+
Sbjct: 311 QAGLRQSLGAYFQLTQAVRLGNLKRFGDVVSQYGPKFQLDHTFTLIIRLRHNVIKTAIRS 370
Query: 306 LTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKT 365
+ +Y +S QDIA + L+S+++AE V + I+DG I AT++ +R E + Y T
Sbjct: 371 IGLSYSRISPQDIAKRLMLDSAEDAEFIVSKAIRDGVIEATLDPAQNFMRSKESTDIYST 430
Query: 366 CE 367
E
Sbjct: 431 RE 432
>sp|Q9UT51|CSN3_SCHPO COP9 signalosome complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn3 PE=3 SV=2
Length = 338
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 14/224 (6%)
Query: 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKAL 197
++ +H +L+ L Y L D ++P L YC Y +G A
Sbjct: 80 ISVMHVCYLKELLRQGQYATSLKSFNDLEVSKHIPGSILLQYCMYAAYHCLGNNDLDSAK 139
Query: 198 ELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYM 257
+++ P +++ + EAY ++L+ +I G+ L TSS LK PY
Sbjct: 140 VWYFSILYIPTTTLTSFHEEAYYSFLLLYIITTGK-KFQLDSATSSNV-LPLKRHMVPYE 197
Query: 258 ELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQD 317
E ++ Y + L T ++ + +F DN+ + + +++ +T+ +L L+
Sbjct: 198 EFLDAY-LKDVNTLRTVIKEHWSRFLKDNSTAFILFALEVYPMHRLKKWRKTFSSLKLEY 256
Query: 318 IANTVQLNSSKEAEMHVLQ--------MIQDGEIFATINQKDGM 353
IA QL S++ ++Q + +GEIF T N D +
Sbjct: 257 IAK--QLAISQDVAKEIIQKFDNKTNFTVANGEIFLTFNALDDV 298
>sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5
Length = 523
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 246 QRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQR 305
Q N++ PY L G + + + + ++ D+ L ++ S++ K I+
Sbjct: 335 QSNMQKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRI 394
Query: 306 LTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFL-------- 357
++ TY +SL+DI + L+S + E V + I+DG I A IN +DG +
Sbjct: 395 ISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDS 454
Query: 358 EDPEQ 362
EDP+Q
Sbjct: 455 EDPQQ 459
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLP 238
Y YY G+IF+ + + AL+ H T + S N V +K +++ ++ +S P
Sbjct: 168 YNYYNGIIFMVEGDYESALKCFH---TCVILSTNRDLVLGAEKRVILCMLLSSDYSIPYP 224
Query: 239 KYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSM 298
K + Y +L + I + E +++N+++ S + K++ ++
Sbjct: 225 ----------CKPSLRIYFKLASAVKRADIKKFEETLESNKDELMSQGLYFVAKRLSQNV 274
Query: 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGM 353
+ I++++ Y +S +DIA+ + +NS E E V + I+ G I + DG+
Sbjct: 275 IQEGIRKISVVYSRISYEDIAHILGINSG-EVEYLVKRTIRKGLIKGKV--ADGI 326
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 96/206 (46%), Gaps = 8/206 (3%)
Query: 179 YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIA-VEA-YKKYILVSLIHHGQFSST 236
Y YY G I Q + A E L + + +++ A+ +EA YK +I+V L+
Sbjct: 250 YQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFLEAVYKLHIVVQLL-----MGE 304
Query: 237 LPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVS 296
+P+ Q++L+ PY+ + G + + +F D L+ ++
Sbjct: 305 IPE-RRIFRQKSLEKTLVPYLRISQAVRIGDLCAFTDALSKYEAEFRFDGLYTLICRLRH 363
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
++ K ++ ++ +Y +SL+D+ + L+S + AE V + I+DG I A+I+ + +
Sbjct: 364 TVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAEYIVAKGIRDGVIDASIDHSNAFMAS 423
Query: 357 LEDPEQYKTCEMIEHIDSSIQRIMSL 382
E + Y T + + IQ ++L
Sbjct: 424 NEAMDIYSTEQPQQAFHERIQFCLAL 449
>sp|Q5S007|LRRK2_HUMAN Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens
GN=LRRK2 PE=1 SV=2
Length = 2527
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 16/123 (13%)
Query: 43 LSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFI 102
+S + LD S++ +G L+P + C P + +F + S Q+ +VPE
Sbjct: 1057 MSCIANLDVSRNDIGPSVVLDPTVKC-----------PTLKQF--NLSYNQLSFVPENLT 1103
Query: 103 NVCKRYKDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGL 160
+V ++ +Q++L I G+ P+ L ++ + S H+++L FL+ C + + A +
Sbjct: 1104 DVVEKL-EQLILEGNKISGICSPLRLKELKILNLSKNHISSLSENFLEACPKVESFSARM 1162
Query: 161 SVL 163
+ L
Sbjct: 1163 NFL 1165
>sp|C0QB17|RS2_DESAH 30S ribosomal protein S2 OS=Desulfobacterium autotrophicum (strain
ATCC 43914 / DSM 3382 / HRM2) GN=rpsB PE=3 SV=1
Length = 280
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 QSIENLVTQIQGLSSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYF 61
Q+I+ +++ + LS+ +D T ++DY K + E +L + + + K+ G ++
Sbjct: 105 QTIKKTISRFEFLSTIENDGT-IEDYPKKERVKMAKERVKLEACIGGISKMKNLPGAIFV 163
Query: 62 LEPCMYCSITKERANTLVPIIARFITSCSAEQIRYV 97
++P KE +PI+A T+C + I YV
Sbjct: 164 IDPKNESIAVKEGKRLGIPIVAVVDTNCDPDDIDYV 199
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 35.8 bits (81), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 254 QPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKR----NIQRLTQT 309
Q Y +L+N + T +++ T+ + N+ + +S + KR NI+ ++
Sbjct: 301 QNYKDLLNQFKTLELIRWSTFFELNKPELDSQTVFKTEPNAWEDLRKRVIEHNIRVISTY 360
Query: 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
Y +S +A + L S E+E V ++ + IFA I++ G+ F
Sbjct: 361 YQKISTARLAELLDL-SLDESEKFVSDLVSNKTIFAKIDRPAGIATF 406
>sp|A4XM02|RS2_CALS8 30S ribosomal protein S2 OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=rpsB PE=3 SV=1
Length = 258
Score = 35.8 bits (81), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|P20430|L_TACVF RNA-directed RNA polymerase L OS=Tacaribe virus (strain
Franze-Fernandez) GN=L PE=1 SV=1
Length = 2210
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 168 YEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVS 226
+E +D FL +C+ G ++ ++ +LL N+V +A + +KY+ V
Sbjct: 20 HEFAHQKDAFLSHCHSGSLL-------QEGFKLLSNLVELESCESHACHLNTCQKYVDVI 72
Query: 227 LIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGK-IVELETYVQTNREKFE 283
L HG TLPK + TGK ++ LET+V+ N E+FE
Sbjct: 73 LSDHGIPCPTLPKVIPDGFKL-----------------TGKTLILLETFVRVNPEEFE 113
>sp|B9MKQ1|RS2_CALBD 30S ribosomal protein S2 OS=Caldicellulosiruptor bescii (strain
ATCC BAA-1888 / DSM 6725 / Z-1320) GN=rpsB PE=3 SV=1
Length = 257
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 33 DLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAE 92
+LLR E RLL +L + LY ++P + E +PI+A T+C +
Sbjct: 135 NLLRKEKERLLKYLGGIQNMPRIPDILYIVDPRKERNAVLEARKLGIPIVAIVDTNCDPD 194
Query: 93 QIRYV 97
+I YV
Sbjct: 195 EIDYV 199
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 221 KYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNRE 280
KY+L+S I S T A R + + + + + E +Q +
Sbjct: 250 KYMLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKP 309
Query: 281 KFESDNNLGLVKQVVSSMY----KRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ 336
+ SD +++ +SS+Y ++N+ R+ + + + + IA + L S+ + E + Q
Sbjct: 310 ELASD---PIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGL-STVQVEGKLSQ 365
Query: 337 MIQDGEIFATINQKDGMVRFLEDPEQYKTCE 367
MI D + ++Q G + ++P+Q KT E
Sbjct: 366 MILDKIFYGILDQGSGCLIVYDEPQQDKTYE 396
>sp|Q5S006|LRRK2_MOUSE Leucine-rich repeat serine/threonine-protein kinase 2 OS=Mus musculus
GN=Lrrk2 PE=1 SV=2
Length = 2527
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 49 LDPSKHSLGYLYFLEPCMYCSITKERANTLVPIIARFITSCSAEQIRYVPEKFINVCKRY 108
LD S++ +G L+P M C K+ + S Q+ +PE V ++
Sbjct: 1063 LDASRNDIGPTVVLDPAMKCPSLKQ-------------LNLSYNQLSSIPENLAQVVEKL 1109
Query: 109 KDQVLLLEAPIRGV-GPM-LTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVL 163
+Q+LL I G+ P+ L ++ + S H+ +L +FL+ C + + A ++ L
Sbjct: 1110 -EQLLLEGNKISGICSPLSLKELKILNLSKNHIPSLPGDFLEACSKVESFSARMNFL 1165
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
++ ++N+ R+ + + + ++ I++ ++L S + E + QMI D + ++Q +G++
Sbjct: 329 NLLEQNLIRVIEPFSRVQIEHISSLIKL-SKADVERKLSQMILDKKFHGILDQGEGVLII 387
Query: 357 LEDPEQYKT----CEMIEHIDSSIQRIMSLSKKLT 387
++P KT E I+++ + + S +KKLT
Sbjct: 388 FDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKLT 422
>sp|Q925J9|MED1_MOUSE Mediator of RNA polymerase II transcription subunit 1 OS=Mus
musculus GN=Med1 PE=1 SV=2
Length = 1575
Score = 32.7 bits (73), Expect = 5.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 225 VSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFES 284
V + HHG+ + P+ ++N + FS+ LVN YN +L+T + + E
Sbjct: 123 VKVAHHGENPVSCPELVQQLREKNFEEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQ 182
Query: 285 D 285
D
Sbjct: 183 D 183
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
++ ++N+ R+ + + + ++ I++ ++L S + E + QMI D + ++Q +G++
Sbjct: 329 NLLEQNLIRVIEPFSRVQIEHISSLIKL-SKADVERKLSQMILDKKFHGILDQGEGVLII 387
Query: 357 LEDPEQYKT----CEMIEHIDSSIQRIMSLSKKLT 387
++P KT E I+++ + + + +KKLT
Sbjct: 388 FDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
++ ++N+ R+ + + + ++ I++ ++L S + E + QMI D + ++Q +G++
Sbjct: 329 NLLEQNLIRVIEPFSRVQIEHISSLIKL-SKADVERKLSQMILDKKFHGILDQGEGVLII 387
Query: 357 LEDPEQYKT----CEMIEHIDSSIQRIMSLSKKLT 387
++P KT E I+++ + + + +KKLT
Sbjct: 388 FDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 297 SMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356
++ ++N+ R+ + + + ++ I++ ++L S + E + QMI D + ++Q +G++
Sbjct: 329 NLLEQNLIRVIEPFSRVQIEHISSLIKL-SKADVERKLSQMILDKKFHGILDQGEGVLII 387
Query: 357 LEDPEQYKT----CEMIEHIDSSIQRIMSLSKKLT 387
++P KT E I+++ + + + +KKLT
Sbjct: 388 FDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT 422
>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription subunit 1 OS=Homo
sapiens GN=MED1 PE=1 SV=4
Length = 1581
Score = 32.0 bits (71), Expect = 8.7, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 225 VSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYVQTNREKFES 284
V + HHG+ + P+ ++N FS+ LVN YN +L+T + + E
Sbjct: 123 VKVAHHGENPVSCPELVQQLREKNFDEFSKHLKGLVNLYNLPGDNKLKTKMYLALQSLEQ 182
Query: 285 D 285
D
Sbjct: 183 D 183
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,219,840
Number of Sequences: 539616
Number of extensions: 5403824
Number of successful extensions: 16181
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 16103
Number of HSP's gapped (non-prelim): 69
length of query: 424
length of database: 191,569,459
effective HSP length: 120
effective length of query: 304
effective length of database: 126,815,539
effective search space: 38551923856
effective search space used: 38551923856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)