Query 014453
Match_columns 424
No_of_seqs 199 out of 759
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_S RPN3, 26S proteasome re 100.0 1.9E-58 6.5E-63 476.2 13.2 346 42-404 127-495 (523)
2 3t5x_A PCI domain-containing p 100.0 2.3E-29 8E-34 233.3 15.9 176 173-359 10-193 (203)
3 3t5v_B Nuclear mRNA export pro 99.9 6.9E-26 2.4E-30 232.7 26.7 212 142-360 178-430 (455)
4 4b4t_P 26S proteasome regulato 99.9 1.1E-26 3.8E-31 239.7 18.5 243 136-387 173-430 (445)
5 3txn_A 26S proteasome regulato 99.9 1.1E-23 3.8E-28 213.0 18.9 256 122-381 122-388 (394)
6 4b4t_R RPN7, 26S proteasome re 99.8 1.1E-17 3.8E-22 171.6 23.2 276 101-391 134-419 (429)
7 4b4t_Q 26S proteasome regulato 99.8 2.5E-17 8.4E-22 165.1 24.0 242 113-361 146-404 (434)
8 4b4t_O 26S proteasome regulato 99.5 1.7E-13 5.7E-18 139.0 13.4 210 142-359 129-353 (393)
9 1ufm_A COP9 complex subunit 4; 99.4 1.5E-13 5.1E-18 108.9 6.7 69 291-360 9-77 (84)
10 4b0z_A RPN12, 26S proteasome r 99.1 2E-09 6.7E-14 101.1 15.7 181 146-336 13-214 (229)
11 3chm_A COP9 signalosome comple 98.2 7.7E-06 2.7E-10 72.9 10.7 97 253-358 59-156 (169)
12 2xev_A YBGF; tetratricopeptide 96.7 0.012 4.2E-07 47.1 10.4 95 114-209 14-109 (129)
13 3gyz_A Chaperone protein IPGC; 96.3 0.055 1.9E-06 46.4 12.3 127 75-209 8-137 (151)
14 4gco_A Protein STI-1; structur 96.1 0.041 1.4E-06 45.1 10.4 90 114-210 25-115 (126)
15 2xcb_A PCRH, regulatory protei 96.1 0.042 1.4E-06 45.6 10.5 91 113-210 29-120 (142)
16 2vgx_A Chaperone SYCD; alterna 96.1 0.045 1.6E-06 46.2 10.9 92 111-209 30-122 (148)
17 3sz7_A HSC70 cochaperone (SGT) 96.0 0.057 1.9E-06 45.7 11.2 91 114-211 23-114 (164)
18 3qky_A Outer membrane assembly 95.9 0.21 7E-06 45.5 15.0 96 114-210 27-131 (261)
19 2vyi_A SGTA protein; chaperone 95.8 0.13 4.3E-06 40.3 11.7 89 114-209 24-113 (131)
20 2dba_A Smooth muscle cell asso 95.7 0.029 9.9E-07 45.6 7.5 92 114-209 40-132 (148)
21 3k9i_A BH0479 protein; putativ 95.7 0.021 7.3E-07 45.7 6.5 90 116-209 4-94 (117)
22 3upv_A Heat shock protein STI1 95.6 0.073 2.5E-06 42.6 9.6 87 114-207 16-103 (126)
23 4ga2_A E3 SUMO-protein ligase 95.6 0.026 9E-07 47.7 7.2 84 120-210 15-99 (150)
24 1hxi_A PEX5, peroxisome target 95.5 0.061 2.1E-06 43.7 8.9 89 114-209 29-118 (121)
25 2lni_A Stress-induced-phosphop 95.3 0.15 5.1E-06 40.3 10.5 90 113-209 27-117 (133)
26 1qqe_A Vesicular transport pro 95.3 0.3 1E-05 45.7 14.2 170 113-288 88-273 (292)
27 3q49_B STIP1 homology and U bo 95.3 0.075 2.6E-06 42.8 8.6 88 114-208 21-109 (137)
28 2kat_A Uncharacterized protein 95.2 0.068 2.3E-06 42.2 8.0 82 121-209 4-86 (115)
29 3ro2_A PINS homolog, G-protein 95.1 1.2 4.3E-05 40.4 17.6 110 114-224 17-131 (338)
30 3rkv_A Putative peptidylprolyl 95.1 0.055 1.9E-06 45.7 7.6 68 140-210 63-131 (162)
31 1elw_A TPR1-domain of HOP; HOP 95.0 0.2 6.8E-06 38.4 10.1 89 114-209 16-105 (118)
32 2fbn_A 70 kDa peptidylprolyl i 94.9 0.15 5.1E-06 44.5 10.0 93 114-209 50-155 (198)
33 3ro3_A PINS homolog, G-protein 94.9 0.14 4.8E-06 41.5 9.2 92 114-205 21-117 (164)
34 2ho1_A Type 4 fimbrial biogene 94.8 1.7 5.7E-05 38.4 17.1 92 113-209 82-174 (252)
35 4gcn_A Protein STI-1; structur 94.8 0.14 4.7E-06 41.8 8.8 94 111-208 17-115 (127)
36 1elr_A TPR2A-domain of HOP; HO 94.7 0.2 6.7E-06 39.2 9.5 90 114-207 16-110 (131)
37 3u4t_A TPR repeat-containing p 94.6 0.74 2.5E-05 41.3 14.2 141 113-270 14-160 (272)
38 3qky_A Outer membrane assembly 94.5 0.5 1.7E-05 42.8 13.0 97 113-210 63-182 (261)
39 2pzi_A Probable serine/threoni 94.4 0.78 2.7E-05 48.8 16.1 153 114-288 403-567 (681)
40 3sf4_A G-protein-signaling mod 94.4 1.6 5.6E-05 41.2 17.0 111 113-224 20-135 (406)
41 2e2e_A Formate-dependent nitri 94.3 0.42 1.4E-05 40.4 11.2 90 114-210 56-149 (177)
42 2l6j_A TPR repeat-containing p 94.3 0.22 7.6E-06 38.2 8.6 65 142-209 6-71 (111)
43 3vtx_A MAMA; tetratricopeptide 94.2 0.51 1.7E-05 40.0 11.7 84 115-205 18-101 (184)
44 1na0_A Designed protein CTPR3; 94.1 0.3 1E-05 37.7 9.1 89 114-209 21-110 (125)
45 1a17_A Serine/threonine protei 94.1 0.29 9.8E-06 40.3 9.5 89 114-209 25-114 (166)
46 2kck_A TPR repeat; tetratricop 94.0 0.14 4.6E-06 39.0 6.7 89 116-209 20-110 (112)
47 3ma5_A Tetratricopeptide repea 94.0 0.11 3.7E-06 40.5 6.2 67 140-209 7-74 (100)
48 4a1s_A PINS, partner of inscut 93.9 1.6 5.5E-05 41.8 15.9 111 113-224 59-174 (411)
49 3vtx_A MAMA; tetratricopeptide 93.9 0.25 8.4E-06 42.1 8.9 89 114-209 85-174 (184)
50 4i17_A Hypothetical protein; T 93.9 0.24 8.2E-06 43.8 9.1 94 111-208 51-149 (228)
51 3hym_B Cell division cycle pro 93.6 0.46 1.6E-05 43.7 10.9 92 114-209 171-269 (330)
52 2q7f_A YRRB protein; TPR, prot 93.5 1.8 6.1E-05 37.8 14.3 90 113-209 68-158 (243)
53 1hh8_A P67PHOX, NCF-2, neutrop 93.5 0.81 2.8E-05 39.6 11.8 94 113-210 48-155 (213)
54 3ieg_A DNAJ homolog subfamily 93.4 0.18 6.2E-06 47.0 7.9 94 112-209 244-339 (359)
55 2xev_A YBGF; tetratricopeptide 93.4 0.17 5.8E-06 40.2 6.5 67 143-209 5-72 (129)
56 3q15_A PSP28, response regulat 93.3 0.91 3.1E-05 43.7 13.0 165 114-284 113-293 (378)
57 3uq3_A Heat shock protein STI1 93.3 1.8 6.2E-05 37.9 14.1 96 114-209 50-172 (258)
58 2h6f_A Protein farnesyltransfe 93.3 1.3 4.3E-05 43.8 14.0 109 94-210 90-200 (382)
59 2h6f_A Protein farnesyltransfe 93.2 2.1 7E-05 42.2 15.5 90 114-210 143-234 (382)
60 3u4t_A TPR repeat-containing p 93.2 0.43 1.5E-05 42.9 9.7 92 114-209 49-141 (272)
61 3q15_A PSP28, response regulat 93.1 1.5 5.1E-05 42.1 14.2 93 113-205 152-250 (378)
62 3uq3_A Heat shock protein STI1 93.1 0.35 1.2E-05 42.7 8.9 86 114-206 151-237 (258)
63 2vq2_A PILW, putative fimbrial 93.1 0.72 2.5E-05 39.7 10.8 89 114-207 88-178 (225)
64 2c2l_A CHIP, carboxy terminus 93.1 0.38 1.3E-05 44.9 9.4 89 114-209 16-105 (281)
65 3urz_A Uncharacterized protein 93.0 0.63 2.1E-05 41.0 10.4 30 180-209 160-190 (208)
66 2pl2_A Hypothetical conserved 93.0 0.7 2.4E-05 41.0 10.8 90 114-210 17-118 (217)
67 1p5q_A FKBP52, FK506-binding p 92.9 0.44 1.5E-05 45.8 9.9 96 111-210 156-264 (336)
68 2pl2_A Hypothetical conserved 92.9 0.32 1.1E-05 43.3 8.4 87 116-210 98-185 (217)
69 2kc7_A BFR218_protein; tetratr 92.9 0.19 6.5E-06 38.2 6.0 63 145-210 5-69 (99)
70 2ifu_A Gamma-SNAP; membrane fu 92.9 1 3.4E-05 42.3 12.3 153 114-273 88-253 (307)
71 1na3_A Designed protein CTPR2; 92.9 0.19 6.4E-06 37.1 5.8 66 141-209 10-76 (91)
72 3urz_A Uncharacterized protein 92.8 0.18 6.3E-06 44.6 6.6 66 142-210 56-122 (208)
73 3gyz_A Chaperone protein IPGC; 92.8 0.43 1.5E-05 40.6 8.7 66 142-210 38-104 (151)
74 3ulq_A Response regulator aspa 92.8 1.6 5.4E-05 41.9 13.8 93 113-205 154-252 (383)
75 2vq2_A PILW, putative fimbrial 92.7 1.3 4.6E-05 37.9 12.0 91 114-209 54-146 (225)
76 1ihg_A Cyclophilin 40; ppiase 92.7 0.33 1.1E-05 47.7 8.7 93 114-209 235-340 (370)
77 2yhc_A BAMD, UPF0169 lipoprote 92.7 0.64 2.2E-05 41.4 10.0 96 114-210 16-130 (225)
78 3mkr_A Coatomer subunit epsilo 92.6 0.49 1.7E-05 44.5 9.6 110 113-234 141-251 (291)
79 4abn_A Tetratricopeptide repea 92.6 1.6 5.4E-05 44.0 14.1 88 114-209 114-212 (474)
80 2hr2_A Hypothetical protein; a 92.6 0.41 1.4E-05 41.7 8.2 107 114-223 23-149 (159)
81 1kt0_A FKBP51, 51 kDa FK506-bi 92.5 0.47 1.6E-05 47.8 9.9 95 112-210 278-385 (457)
82 3upv_A Heat shock protein STI1 92.5 0.5 1.7E-05 37.5 8.2 65 142-209 6-71 (126)
83 2fo7_A Synthetic consensus TPR 92.5 0.68 2.3E-05 35.8 8.9 87 114-207 47-134 (136)
84 3as5_A MAMA; tetratricopeptide 92.4 1.4 4.9E-05 36.2 11.4 89 114-209 54-143 (186)
85 2xcb_A PCRH, regulatory protei 92.4 0.55 1.9E-05 38.5 8.6 66 142-210 20-86 (142)
86 4i17_A Hypothetical protein; T 92.3 0.65 2.2E-05 40.9 9.6 90 114-209 19-109 (228)
87 4gco_A Protein STI-1; structur 92.3 0.5 1.7E-05 38.4 8.1 66 141-209 14-80 (126)
88 3sz7_A HSC70 cochaperone (SGT) 92.3 0.48 1.7E-05 39.7 8.2 66 141-209 12-78 (164)
89 3nf1_A KLC 1, kinesin light ch 92.2 0.33 1.1E-05 44.3 7.7 96 113-208 164-310 (311)
90 2vgx_A Chaperone SYCD; alterna 92.2 0.59 2E-05 39.1 8.6 68 140-210 21-89 (148)
91 4gyw_A UDP-N-acetylglucosamine 92.1 2.7 9.1E-05 45.3 15.7 91 112-209 19-110 (723)
92 2ho1_A Type 4 fimbrial biogene 92.1 1.1 3.7E-05 39.7 10.8 91 114-209 117-208 (252)
93 1fch_A Peroxisomal targeting s 92.1 1.2 4E-05 41.9 11.6 87 117-208 196-283 (368)
94 1w3b_A UDP-N-acetylglucosamine 92.1 3.1 0.00011 39.6 14.8 64 142-208 35-99 (388)
95 3ro3_A PINS homolog, G-protein 92.1 0.44 1.5E-05 38.4 7.5 93 113-205 60-157 (164)
96 3nf1_A KLC 1, kinesin light ch 92.0 6 0.00021 35.6 16.1 92 115-206 40-140 (311)
97 3as5_A MAMA; tetratricopeptide 92.0 0.62 2.1E-05 38.5 8.6 90 114-210 88-178 (186)
98 1hxi_A PEX5, peroxisome target 91.9 0.28 9.5E-06 39.6 6.0 65 142-209 19-84 (121)
99 2dba_A Smooth muscle cell asso 91.9 0.8 2.7E-05 36.7 8.9 70 140-209 28-98 (148)
100 1xnf_A Lipoprotein NLPI; TPR, 91.9 0.8 2.7E-05 41.0 9.7 93 111-210 52-145 (275)
101 4eqf_A PEX5-related protein; a 91.9 1.3 4.4E-05 41.9 11.6 88 117-209 192-280 (365)
102 2lni_A Stress-induced-phosphop 91.8 0.87 3E-05 35.6 8.9 70 137-209 13-83 (133)
103 1rz4_A Eukaryotic translation 91.7 0.7 2.4E-05 42.6 9.2 89 256-357 102-190 (226)
104 3gw4_A Uncharacterized protein 91.7 1.6 5.4E-05 37.1 11.1 93 114-206 38-136 (203)
105 4ga2_A E3 SUMO-protein ligase 91.7 0.37 1.2E-05 40.4 6.7 91 113-210 42-134 (150)
106 3q49_B STIP1 homology and U bo 91.7 0.7 2.4E-05 36.8 8.2 67 140-209 9-76 (137)
107 1elw_A TPR1-domain of HOP; HOP 91.6 0.85 2.9E-05 34.6 8.4 65 142-209 6-71 (118)
108 2qfc_A PLCR protein; TPR, HTH, 91.6 0.47 1.6E-05 44.1 8.1 94 114-207 167-267 (293)
109 1pc2_A Mitochondria fission pr 91.5 0.55 1.9E-05 40.6 7.7 54 155-209 50-104 (152)
110 4eqf_A PEX5-related protein; a 91.4 0.94 3.2E-05 42.8 10.1 89 114-209 225-314 (365)
111 2fo7_A Synthetic consensus TPR 91.3 0.99 3.4E-05 34.8 8.6 88 115-209 14-102 (136)
112 3gw4_A Uncharacterized protein 91.2 0.69 2.4E-05 39.4 8.2 97 112-208 76-178 (203)
113 2qfc_A PLCR protein; TPR, HTH, 91.1 1.5 5.1E-05 40.6 11.1 91 115-205 128-224 (293)
114 3qou_A Protein YBBN; thioredox 91.1 2.1 7.2E-05 39.8 12.1 93 113-209 128-252 (287)
115 3fp2_A TPR repeat-containing p 91.1 6.7 0.00023 38.7 16.5 89 114-210 255-344 (537)
116 3sf4_A G-protein-signaling mod 91.0 5.5 0.00019 37.4 15.3 123 111-234 56-204 (406)
117 2ond_A Cleavage stimulation fa 91.0 9.7 0.00033 35.2 17.7 110 95-209 47-167 (308)
118 1elr_A TPR2A-domain of HOP; HO 91.0 1.1 3.8E-05 34.6 8.6 65 142-209 6-71 (131)
119 2q7f_A YRRB protein; TPR, prot 91.0 1.9 6.6E-05 37.5 11.1 90 113-209 102-192 (243)
120 4gyw_A UDP-N-acetylglucosamine 90.9 1.1 3.8E-05 48.3 11.2 92 111-209 52-144 (723)
121 1xnf_A Lipoprotein NLPI; TPR, 90.9 0.66 2.2E-05 41.5 8.0 68 139-209 42-110 (275)
122 3ulq_A Response regulator aspa 90.8 3.1 0.00011 39.8 13.4 96 114-209 115-217 (383)
123 3cv0_A Peroxisome targeting si 90.7 2.5 8.6E-05 38.5 12.1 61 142-205 174-234 (327)
124 3hym_B Cell division cycle pro 90.7 6.5 0.00022 35.7 15.0 84 118-208 107-191 (330)
125 3ro2_A PINS homolog, G-protein 90.6 0.82 2.8E-05 41.7 8.6 96 114-209 195-296 (338)
126 4a1s_A PINS, partner of inscut 90.5 5.7 0.00019 37.8 15.0 98 111-208 95-215 (411)
127 1wao_1 Serine/threonine protei 90.5 0.89 3.1E-05 46.1 9.4 86 118-210 22-108 (477)
128 1hh8_A P67PHOX, NCF-2, neutrop 90.4 1.4 5E-05 37.9 9.7 87 114-210 18-105 (213)
129 2yhc_A BAMD, UPF0169 lipoprote 90.4 7.2 0.00025 34.3 14.5 107 114-224 53-192 (225)
130 4b4t_Q 26S proteasome regulato 90.4 1 3.4E-05 43.7 9.4 91 119-209 112-208 (434)
131 3ieg_A DNAJ homolog subfamily 90.3 9.3 0.00032 35.0 15.8 85 114-205 132-216 (359)
132 2gw1_A Mitochondrial precursor 90.3 6.1 0.00021 38.6 15.2 88 114-209 249-337 (514)
133 4gcn_A Protein STI-1; structur 90.2 0.37 1.3E-05 39.1 5.2 65 143-210 11-76 (127)
134 1w3b_A UDP-N-acetylglucosamine 90.2 7.8 0.00027 36.7 15.6 90 113-209 112-202 (388)
135 2kck_A TPR repeat; tetratricop 90.1 0.3 1E-05 37.0 4.3 64 142-208 8-72 (112)
136 2y4t_A DNAJ homolog subfamily 89.9 0.47 1.6E-05 46.2 6.6 95 111-209 266-362 (450)
137 4abn_A Tetratricopeptide repea 89.7 0.78 2.7E-05 46.3 8.2 15 191-205 235-249 (474)
138 2vsy_A XCC0866; transferase, g 89.7 1.2 4.2E-05 45.6 9.8 61 142-205 25-85 (568)
139 3edt_B KLC 2, kinesin light ch 89.6 0.7 2.4E-05 41.2 7.0 90 117-206 16-114 (283)
140 4b4t_T 26S proteasome regulato 89.5 1.1 3.8E-05 42.4 8.6 92 257-358 146-237 (274)
141 1wi9_A Protein C20ORF116 homol 89.5 0.91 3.1E-05 34.0 6.2 49 309-358 18-66 (72)
142 1fch_A Peroxisomal targeting s 89.2 2 6.8E-05 40.2 10.2 59 149-209 190-250 (368)
143 2vyi_A SGTA protein; chaperone 89.1 0.77 2.6E-05 35.5 6.2 66 141-209 13-79 (131)
144 3edt_B KLC 2, kinesin light ch 88.7 1.3 4.6E-05 39.3 8.2 93 114-206 139-281 (283)
145 2y4t_A DNAJ homolog subfamily 88.4 18 0.00062 34.6 17.3 89 114-208 189-289 (450)
146 2xpi_A Anaphase-promoting comp 88.4 2.3 7.8E-05 43.0 10.7 88 114-208 385-473 (597)
147 3u3w_A Transcriptional activat 88.3 3.2 0.00011 38.2 10.9 93 117-209 130-229 (293)
148 2xpi_A Anaphase-promoting comp 88.2 1.7 5.8E-05 44.0 9.6 91 114-208 453-548 (597)
149 2e2e_A Formate-dependent nitri 88.1 2.5 8.5E-05 35.4 9.2 87 116-209 24-114 (177)
150 1a17_A Serine/threonine protei 87.7 2.1 7E-05 34.9 8.2 65 142-209 15-80 (166)
151 2vsy_A XCC0866; transferase, g 87.5 1.8 6.3E-05 44.2 9.4 88 114-208 69-160 (568)
152 2gw1_A Mitochondrial precursor 87.2 1.9 6.6E-05 42.3 9.1 87 114-208 18-105 (514)
153 1na0_A Designed protein CTPR3; 87.1 1.2 4.2E-05 33.9 6.1 66 141-209 10-76 (125)
154 3k9i_A BH0479 protein; putativ 86.1 1.2 4E-05 35.1 5.5 57 153-209 3-60 (117)
155 1qgp_A Protein (double strande 86.0 1.8 6.1E-05 32.7 6.2 48 301-349 17-67 (77)
156 1qbj_A Protein (double-strande 85.6 2 6.9E-05 32.9 6.4 62 300-363 12-76 (81)
157 3u3w_A Transcriptional activat 85.6 1.3 4.5E-05 41.0 6.4 93 114-206 167-266 (293)
158 3fp2_A TPR repeat-containing p 85.5 4.4 0.00015 40.1 10.8 88 113-208 36-124 (537)
159 1qqe_A Vesicular transport pro 85.3 4.2 0.00014 37.6 9.9 111 114-224 49-166 (292)
160 2if4_A ATFKBP42; FKBP-like, al 85.1 0.88 3E-05 43.8 5.1 66 141-209 231-297 (338)
161 2heo_A Z-DNA binding protein 1 84.8 2.4 8.2E-05 30.9 6.3 34 311-345 24-57 (67)
162 3cv0_A Peroxisome targeting si 84.5 3.7 0.00013 37.4 9.0 88 115-209 34-122 (327)
163 3ly7_A Transcriptional activat 84.1 6.2 0.00021 38.9 10.8 66 140-209 277-343 (372)
164 4f3v_A ESX-1 secretion system 84.0 1.9 6.6E-05 41.0 6.9 95 107-207 107-201 (282)
165 3mkr_A Coatomer subunit epsilo 84.0 3.7 0.00013 38.3 8.9 81 118-209 81-163 (291)
166 2c2l_A CHIP, carboxy terminus 83.4 3.4 0.00012 38.2 8.3 65 142-209 6-71 (281)
167 2ond_A Cleavage stimulation fa 83.0 16 0.00054 33.7 12.9 88 114-209 111-202 (308)
168 1hz4_A MALT regulatory protein 82.2 18 0.00061 33.9 13.2 94 113-206 104-203 (373)
169 3rkv_A Putative peptidylprolyl 82.1 4.6 0.00016 33.3 7.9 67 143-209 14-96 (162)
170 2ifu_A Gamma-SNAP; membrane fu 81.3 7.4 0.00025 36.2 9.9 95 116-210 129-228 (307)
171 2r5s_A Uncharacterized protein 81.2 2.9 0.0001 35.3 6.4 80 121-205 93-172 (176)
172 1nzn_A CGI-135 protein, fissio 80.1 2.9 9.9E-05 34.8 5.7 51 158-209 56-107 (126)
173 2fbn_A 70 kDa peptidylprolyl i 79.5 6.3 0.00022 33.7 8.1 67 143-209 41-121 (198)
174 2v5f_A Prolyl 4-hydroxylase su 79.4 4.2 0.00014 31.6 6.3 66 144-209 9-79 (104)
175 4g1t_A Interferon-induced prot 78.5 6.5 0.00022 38.3 8.8 85 122-210 320-406 (472)
176 1xn7_A Hypothetical protein YH 78.2 4.1 0.00014 30.9 5.6 42 302-344 6-47 (78)
177 1zu2_A Mitochondrial import re 77.3 3.4 0.00012 35.7 5.5 53 155-210 61-125 (158)
178 2pzi_A Probable serine/threoni 76.4 4.1 0.00014 43.1 7.1 83 115-205 446-528 (681)
179 1ihg_A Cyclophilin 40; ppiase 76.2 8.3 0.00028 37.5 8.7 67 143-209 226-306 (370)
180 1p5q_A FKBP52, FK506-binding p 75.9 7.3 0.00025 37.1 8.1 69 141-209 148-229 (336)
181 2jt1_A PEFI protein; solution 75.9 6.4 0.00022 29.7 6.1 35 311-346 23-57 (77)
182 2r5s_A Uncharacterized protein 75.6 2.5 8.5E-05 35.7 4.2 62 143-207 9-71 (176)
183 2k02_A Ferrous iron transport 75.3 4.2 0.00014 31.6 5.0 44 302-346 6-49 (87)
184 1ouv_A Conserved hypothetical 75.2 10 0.00035 34.0 8.6 81 115-206 19-107 (273)
185 3o48_A Mitochondria fission 1 75.1 6.2 0.00021 33.2 6.3 61 157-223 60-121 (134)
186 3bee_A Putative YFRE protein; 74.8 11 0.00037 29.0 7.4 50 156-208 25-75 (93)
187 2pjp_A Selenocysteine-specific 74.4 27 0.00093 28.1 10.1 86 304-402 10-99 (121)
188 2htj_A P fimbrial regulatory p 73.9 6.1 0.00021 29.5 5.6 35 311-346 13-47 (81)
189 1hz4_A MALT regulatory protein 73.1 21 0.00072 33.4 10.6 96 114-209 65-168 (373)
190 3ffl_A Anaphase-promoting comp 73.0 4.9 0.00017 35.1 5.4 63 143-205 23-91 (167)
191 3ma5_A Tetratricopeptide repea 72.6 8.6 0.00029 29.1 6.3 34 177-210 7-41 (100)
192 1sfx_A Conserved hypothetical 71.9 30 0.001 26.2 11.3 39 310-349 32-70 (109)
193 4f3v_A ESX-1 secretion system 71.8 5.8 0.0002 37.6 6.0 64 140-207 102-165 (282)
194 2cfx_A HTH-type transcriptiona 71.1 9.1 0.00031 31.8 6.6 47 303-350 10-59 (144)
195 3qou_A Protein YBBN; thioredox 70.4 5.8 0.0002 36.7 5.7 79 124-208 104-183 (287)
196 2l6j_A TPR repeat-containing p 69.1 3.7 0.00013 30.9 3.4 84 114-201 16-102 (111)
197 2p5v_A Transcriptional regulat 69.0 10 0.00035 32.1 6.6 47 303-350 15-64 (162)
198 2cg4_A Regulatory protein ASNC 68.4 9.9 0.00034 31.8 6.3 47 303-350 13-62 (152)
199 1na3_A Designed protein CTPR2; 68.2 6.1 0.00021 28.4 4.4 35 175-209 7-42 (91)
200 2dbb_A Putative HTH-type trans 67.9 10 0.00036 31.6 6.3 45 305-350 16-63 (151)
201 2ooe_A Cleavage stimulation fa 67.9 1E+02 0.0034 30.6 16.7 85 120-209 304-388 (530)
202 3i4p_A Transcriptional regulat 67.6 12 0.00042 31.8 6.8 48 302-350 7-57 (162)
203 4g1t_A Interferon-induced prot 66.9 9.7 0.00033 37.0 6.8 89 115-210 188-281 (472)
204 1y8m_A FIS1; mitochondria, unk 66.7 9.1 0.00031 32.5 5.5 47 173-223 73-120 (144)
205 2ia0_A Putative HTH-type trans 66.5 12 0.00042 32.3 6.6 42 308-350 27-71 (171)
206 3t5v_A Nuclear mRNA export pro 66.4 5.8 0.0002 38.3 4.8 46 290-335 198-247 (316)
207 1kt0_A FKBP51, 51 kDa FK506-bi 66.2 14 0.00047 36.8 7.9 68 142-209 270-350 (457)
208 1oyi_A Double-stranded RNA-bin 65.7 8 0.00027 29.7 4.5 33 313-346 31-63 (82)
209 1ouv_A Conserved hypothetical 64.3 18 0.00061 32.2 7.6 81 115-206 55-143 (273)
210 2y75_A HTH-type transcriptiona 63.6 27 0.00093 28.2 8.0 61 311-373 25-85 (129)
211 3n71_A Histone lysine methyltr 63.6 14 0.00047 37.7 7.3 88 118-206 325-422 (490)
212 2ooe_A Cleavage stimulation fa 63.3 53 0.0018 32.7 11.7 91 114-209 333-424 (530)
213 2w25_A Probable transcriptiona 63.2 16 0.00055 30.4 6.6 42 308-350 17-61 (150)
214 1ub9_A Hypothetical protein PH 62.7 46 0.0016 24.9 11.5 38 310-348 28-65 (100)
215 3qww_A SET and MYND domain-con 62.6 7.2 0.00025 39.1 4.9 86 120-206 316-411 (433)
216 3cuo_A Uncharacterized HTH-typ 60.6 31 0.001 25.9 7.4 37 311-348 37-73 (99)
217 2kat_A Uncharacterized protein 60.2 18 0.00062 27.5 6.0 33 177-209 19-52 (115)
218 3t8r_A Staphylococcus aureus C 58.9 40 0.0014 28.1 8.3 62 312-375 28-89 (143)
219 3lwf_A LIN1550 protein, putati 58.7 32 0.0011 29.4 7.7 60 312-373 44-103 (159)
220 1ku9_A Hypothetical protein MJ 58.3 69 0.0024 25.5 9.8 40 311-351 40-79 (152)
221 1wao_1 Serine/threonine protei 57.9 12 0.0004 37.7 5.6 58 149-209 15-73 (477)
222 3qwp_A SET and MYND domain-con 57.6 8.3 0.00028 38.6 4.3 64 143-206 332-400 (429)
223 3k0l_A Repressor protein; heli 57.4 80 0.0027 26.0 10.1 42 310-352 58-99 (162)
224 3cjn_A Transcriptional regulat 56.9 79 0.0027 25.9 10.0 40 310-350 64-103 (162)
225 1ylf_A RRF2 family protein; st 56.5 19 0.00064 30.3 5.8 61 311-374 29-89 (149)
226 1xmk_A Double-stranded RNA-spe 56.3 20 0.00068 27.1 5.3 45 300-345 13-58 (79)
227 2cyy_A Putative HTH-type trans 56.3 15 0.00052 30.7 5.2 42 308-350 17-61 (151)
228 2e1c_A Putative HTH-type trans 55.9 16 0.00056 31.4 5.5 42 308-350 37-81 (171)
229 2qvo_A Uncharacterized protein 54.7 59 0.002 24.6 8.1 30 313-343 31-60 (95)
230 3bdd_A Regulatory protein MARR 54.7 37 0.0013 27.1 7.3 40 310-350 43-82 (142)
231 2d1h_A ST1889, 109AA long hypo 54.6 66 0.0023 24.2 9.7 45 304-349 28-72 (109)
232 2pn6_A ST1022, 150AA long hypo 53.4 18 0.00062 30.0 5.2 47 303-350 8-57 (150)
233 1xd7_A YWNA; structural genomi 53.0 16 0.00056 30.5 4.9 66 304-373 16-81 (145)
234 3oop_A LIN2960 protein; protei 52.6 72 0.0025 25.5 8.8 39 311-350 50-88 (143)
235 4b4t_R RPN7, 26S proteasome re 52.4 35 0.0012 33.8 8.0 72 140-211 131-202 (429)
236 2fbi_A Probable transcriptiona 52.2 86 0.0029 24.8 10.7 42 310-352 48-89 (142)
237 3mv2_B Coatomer subunit epsilo 52.1 33 0.0011 32.8 7.4 114 112-232 146-270 (310)
238 2nnn_A Probable transcriptiona 51.8 86 0.0029 24.7 11.1 41 311-352 51-91 (140)
239 2v79_A DNA replication protein 51.2 20 0.00069 29.8 5.1 34 311-345 50-83 (135)
240 2nyx_A Probable transcriptiona 50.3 1.1E+02 0.0037 25.4 10.2 41 310-351 57-97 (168)
241 1tbx_A ORF F-93, hypothetical 50.3 79 0.0027 23.8 8.4 46 310-356 20-69 (99)
242 3bpv_A Transcriptional regulat 49.9 92 0.0032 24.5 10.4 42 310-352 41-82 (138)
243 3s2w_A Transcriptional regulat 49.0 99 0.0034 25.3 9.3 40 311-351 63-102 (159)
244 2v5f_A Prolyl 4-hydroxylase su 48.9 25 0.00087 26.9 5.1 63 105-167 8-73 (104)
245 3txn_A 26S proteasome regulato 48.5 29 0.00099 34.4 6.5 67 142-208 101-170 (394)
246 2fbh_A Transcriptional regulat 48.3 80 0.0027 25.1 8.4 41 309-350 49-89 (146)
247 3bro_A Transcriptional regulat 48.3 54 0.0019 26.1 7.3 39 312-351 50-88 (141)
248 1i1g_A Transcriptional regulat 47.9 25 0.00086 28.6 5.2 36 309-345 15-50 (141)
249 3tgn_A ADC operon repressor AD 47.9 26 0.00088 28.3 5.3 41 309-351 49-89 (146)
250 3ech_A MEXR, multidrug resista 47.6 67 0.0023 25.7 7.8 41 310-351 49-89 (142)
251 3eco_A MEPR; mutlidrug efflux 47.1 1E+02 0.0036 24.3 10.0 39 312-351 47-85 (139)
252 2if4_A ATFKBP42; FKBP-like, al 47.1 19 0.00066 34.1 4.9 65 143-209 182-263 (338)
253 3k69_A Putative transcription 46.8 29 0.001 29.7 5.6 61 311-373 27-87 (162)
254 3bj6_A Transcriptional regulat 46.8 92 0.0031 25.0 8.6 40 310-350 52-91 (152)
255 2rdp_A Putative transcriptiona 46.2 1.1E+02 0.0038 24.4 10.6 41 310-351 54-94 (150)
256 3bja_A Transcriptional regulat 46.0 1.1E+02 0.0036 24.1 8.8 41 310-351 45-85 (139)
257 2pg4_A Uncharacterized protein 45.9 43 0.0015 25.3 6.0 32 312-344 30-62 (95)
258 3mv2_B Coatomer subunit epsilo 45.9 71 0.0024 30.4 8.7 92 112-208 110-210 (310)
259 4b8x_A SCO5413, possible MARR- 45.9 55 0.0019 26.9 7.1 41 311-352 50-90 (147)
260 3jth_A Transcription activator 45.3 54 0.0018 24.8 6.5 37 311-348 35-71 (98)
261 2hr2_A Hypothetical protein; a 45.1 37 0.0013 29.1 5.9 64 143-206 14-86 (159)
262 3g3z_A NMB1585, transcriptiona 45.0 41 0.0014 27.1 6.1 48 310-358 43-93 (145)
263 2a61_A Transcriptional regulat 44.8 1.2E+02 0.0039 24.1 11.0 42 310-352 45-86 (145)
264 3e6m_A MARR family transcripti 44.8 89 0.003 25.7 8.3 40 310-350 65-104 (161)
265 1s3j_A YUSO protein; structura 44.5 1.2E+02 0.0042 24.3 9.8 40 310-350 49-88 (155)
266 2gxg_A 146AA long hypothetical 44.2 1.2E+02 0.004 24.1 10.1 40 310-350 48-87 (146)
267 4gns_B Protein CSD3, chitin bi 44.1 67 0.0023 34.6 9.0 60 141-203 338-397 (754)
268 1y0u_A Arsenical resistance op 43.4 65 0.0022 24.3 6.7 44 311-359 42-85 (96)
269 2qww_A Transcriptional regulat 43.3 45 0.0015 27.2 6.1 40 311-351 54-95 (154)
270 1lj9_A Transcriptional regulat 43.3 1.2E+02 0.0042 24.0 10.0 39 311-350 42-80 (144)
271 3nrv_A Putative transcriptiona 43.1 39 0.0013 27.3 5.7 40 310-350 52-91 (148)
272 2kko_A Possible transcriptiona 43.1 38 0.0013 26.5 5.3 37 311-348 37-73 (108)
273 1z05_A Transcriptional regulat 42.7 53 0.0018 32.4 7.5 46 299-345 40-85 (429)
274 2fa5_A Transcriptional regulat 42.5 1E+02 0.0035 25.1 8.3 40 310-350 61-100 (162)
275 1ucr_A Protein DSVD; dissimila 42.5 30 0.001 26.1 4.1 36 308-344 17-53 (78)
276 3hsr_A HTH-type transcriptiona 42.4 32 0.0011 27.8 5.0 41 310-351 48-88 (140)
277 1z7u_A Hypothetical protein EF 42.2 1.2E+02 0.0041 23.6 10.1 40 311-351 34-74 (112)
278 1z6r_A MLC protein; transcript 42.1 38 0.0013 33.0 6.3 46 299-345 17-62 (406)
279 1jgs_A Multiple antibiotic res 42.0 1.2E+02 0.0043 23.7 12.6 42 310-352 46-87 (138)
280 1r1u_A CZRA, repressor protein 42.0 1E+02 0.0035 23.6 7.8 44 311-357 38-81 (106)
281 1uly_A Hypothetical protein PH 41.8 51 0.0018 28.9 6.5 35 311-346 32-66 (192)
282 1u2w_A CADC repressor, cadmium 41.4 95 0.0032 24.7 7.7 37 310-347 54-90 (122)
283 2eth_A Transcriptional regulat 41.4 1.4E+02 0.0048 24.1 10.5 39 311-350 57-95 (154)
284 4hbl_A Transcriptional regulat 41.2 35 0.0012 27.9 5.1 41 310-351 53-93 (149)
285 1klx_A Cysteine rich protein B 41.1 36 0.0012 27.4 5.1 59 143-206 60-126 (138)
286 3df8_A Possible HXLR family tr 40.9 1E+02 0.0035 24.1 7.6 36 312-348 42-78 (111)
287 3d9j_A RNA-binding protein 16; 40.8 29 0.00098 29.2 4.4 69 1-70 1-74 (145)
288 2hzt_A Putative HTH-type trans 40.3 88 0.003 24.2 7.1 41 310-351 25-66 (107)
289 2pex_A Transcriptional regulat 40.2 48 0.0017 27.0 5.8 40 310-350 59-98 (153)
290 2oqg_A Possible transcriptiona 40.0 1.2E+02 0.0042 23.1 12.4 38 310-348 32-69 (114)
291 2bv6_A MGRA, HTH-type transcri 39.9 82 0.0028 25.1 7.2 40 310-350 49-88 (142)
292 3rjv_A Putative SEL1 repeat pr 39.8 29 0.00098 30.1 4.5 73 121-205 5-81 (212)
293 3deu_A Transcriptional regulat 39.8 1.1E+02 0.0036 25.5 8.1 48 310-358 66-116 (166)
294 1sfu_A 34L protein; protein/Z- 39.7 46 0.0016 24.9 4.8 35 313-348 30-64 (75)
295 2kc7_A BFR218_protein; tetratr 39.6 28 0.00095 25.4 3.9 29 181-209 4-33 (99)
296 3eqx_A FIC domain containing t 39.6 2.7E+02 0.0093 26.9 13.2 141 194-344 187-342 (373)
297 2x4h_A Hypothetical protein SS 39.6 49 0.0017 26.6 5.7 40 305-345 24-63 (139)
298 3cdh_A Transcriptional regulat 39.4 96 0.0033 25.1 7.6 39 310-349 55-93 (155)
299 3pqk_A Biofilm growth-associat 38.9 97 0.0033 23.5 7.1 38 311-349 35-72 (102)
300 2k9l_A RNA polymerase sigma fa 38.7 27 0.00092 25.9 3.5 26 310-336 46-71 (76)
301 1lva_A Selenocysteine-specific 38.4 1.8E+02 0.0062 26.5 10.0 82 308-403 153-236 (258)
302 2pi2_A Replication protein A 3 37.6 7 0.00024 36.7 0.0 38 311-349 223-261 (270)
303 2vn2_A DNAD, chromosome replic 37.5 47 0.0016 27.0 5.2 36 313-349 52-87 (128)
304 1r7j_A Conserved hypothetical 37.4 1.4E+02 0.0047 22.9 11.1 33 313-346 21-53 (95)
305 4ham_A LMO2241 protein; struct 37.2 1.6E+02 0.0056 23.7 12.1 68 288-358 13-81 (134)
306 2lnb_A Z-DNA-binding protein 1 36.9 82 0.0028 23.8 5.8 42 302-344 24-65 (80)
307 2xvc_A ESCRT-III, SSO0910; cel 36.4 49 0.0017 23.5 4.2 32 312-344 25-56 (59)
308 2frh_A SARA, staphylococcal ac 36.4 69 0.0024 25.5 6.0 40 311-351 52-91 (127)
309 3rjv_A Putative SEL1 repeat pr 35.8 33 0.0011 29.7 4.3 80 115-206 31-118 (212)
310 3tqn_A Transcriptional regulat 35.4 78 0.0027 24.9 6.1 64 290-356 10-74 (113)
311 2xm6_A Protein corresponding t 35.3 55 0.0019 32.2 6.3 48 153-205 128-179 (490)
312 4gq2_M Nucleoporin NUP120; bet 35.2 74 0.0025 35.1 7.8 57 142-205 812-868 (950)
313 3fm5_A Transcriptional regulat 34.8 1.4E+02 0.0048 23.9 7.9 40 311-351 53-92 (150)
314 4b4t_P 26S proteasome regulato 34.1 3.3E+02 0.011 26.8 11.9 64 142-205 139-205 (445)
315 3nqo_A MARR-family transcripti 33.5 2.2E+02 0.0075 24.1 10.7 41 310-351 55-95 (189)
316 3b73_A PHIH1 repressor-like pr 33.0 78 0.0027 25.3 5.7 50 303-356 18-69 (111)
317 1tty_A Sigma-A, RNA polymerase 32.9 67 0.0023 23.9 5.1 49 290-339 11-64 (87)
318 2qc0_A Uncharacterized protein 32.5 2.5E+02 0.0085 27.1 10.4 33 312-345 311-343 (373)
319 2fxa_A Protease production reg 31.3 72 0.0025 28.0 5.8 40 311-351 61-100 (207)
320 1z91_A Organic hydroperoxide r 31.1 56 0.0019 26.2 4.7 38 311-349 53-90 (147)
321 3kp7_A Transcriptional regulat 31.0 67 0.0023 26.0 5.2 36 309-345 48-83 (151)
322 2qlz_A Transcription factor PF 30.8 1.4E+02 0.0049 26.9 7.8 47 308-358 174-220 (232)
323 3ax2_A Mitochondrial import re 30.7 39 0.0013 25.2 3.1 38 182-222 22-60 (73)
324 3f6o_A Probable transcriptiona 30.3 1.3E+02 0.0044 23.6 6.7 38 311-349 30-67 (118)
325 3boq_A Transcriptional regulat 30.2 1.2E+02 0.0041 24.6 6.7 42 308-350 58-99 (160)
326 3u2r_A Regulatory protein MARR 30.1 2.3E+02 0.0078 23.2 10.6 41 311-352 61-101 (168)
327 1x3u_A Transcriptional regulat 30.1 1.3E+02 0.0045 21.3 6.2 48 291-339 10-57 (79)
328 2wte_A CSA3; antiviral protein 30.0 1.6E+02 0.0056 26.7 8.1 46 309-357 163-208 (244)
329 2fu4_A Ferric uptake regulatio 29.7 1.6E+02 0.0054 21.3 6.9 44 311-356 32-80 (83)
330 3f3x_A Transcriptional regulat 29.6 2.1E+02 0.0071 22.6 10.4 38 314-352 52-89 (144)
331 3r0a_A Putative transcriptiona 29.6 2.1E+02 0.0072 22.6 10.7 35 313-348 43-77 (123)
332 3qww_A SET and MYND domain-con 29.1 42 0.0014 33.5 4.2 53 153-205 311-368 (433)
333 4aik_A Transcriptional regulat 28.3 2.4E+02 0.0083 22.9 9.2 46 306-352 40-85 (151)
334 3dv8_A Transcriptional regulat 28.1 1.1E+02 0.0038 26.1 6.4 43 311-358 168-210 (220)
335 3f6v_A Possible transcriptiona 27.6 90 0.0031 26.1 5.5 38 310-348 69-106 (151)
336 3dra_A Protein farnesyltransfe 27.2 3.2E+02 0.011 25.5 9.9 115 100-226 31-156 (306)
337 4g26_A Pentatricopeptide repea 27.1 1.2E+02 0.0043 30.4 7.4 25 142-166 28-52 (501)
338 3jw4_A Transcriptional regulat 26.9 1E+02 0.0035 24.8 5.6 40 311-351 56-95 (148)
339 2jsc_A Transcriptional regulat 26.2 1.6E+02 0.0054 23.1 6.5 37 311-348 33-69 (118)
340 3dkw_A DNR protein; CRP-FNR, H 25.6 97 0.0033 26.6 5.6 43 311-358 177-219 (227)
341 3qwp_A SET and MYND domain-con 25.5 1E+02 0.0036 30.4 6.3 56 150-205 297-357 (429)
342 2hoe_A N-acetylglucosamine kin 25.4 72 0.0025 30.8 5.0 41 303-345 25-65 (380)
343 3iuo_A ATP-dependent DNA helic 25.3 1.3E+02 0.0045 24.2 5.8 33 311-344 31-64 (122)
344 3dra_A Protein farnesyltransfe 25.2 1.6E+02 0.0053 27.7 7.2 76 146-228 38-117 (306)
345 1on2_A Transcriptional regulat 25.1 2.6E+02 0.0088 22.2 12.0 46 309-358 19-64 (142)
346 2h09_A Transcriptional regulat 24.9 2.5E+02 0.0087 22.7 7.9 34 311-345 53-86 (155)
347 4fhn_B Nucleoporin NUP120; pro 24.9 68 0.0023 36.0 5.3 60 139-205 811-870 (1139)
348 3n71_A Histone lysine methyltr 24.8 80 0.0027 31.9 5.4 56 150-205 319-379 (490)
349 3t72_q RNA polymerase sigma fa 24.7 1.3E+02 0.0043 23.4 5.4 28 311-339 38-65 (99)
350 3by6_A Predicted transcription 24.7 2.7E+02 0.0091 22.2 10.7 44 310-356 32-76 (126)
351 2fsw_A PG_0823 protein; alpha- 24.6 2.1E+02 0.0073 21.8 6.9 41 310-351 36-77 (107)
352 2oz6_A Virulence factor regula 24.6 71 0.0024 27.1 4.4 33 311-344 163-195 (207)
353 3hug_A RNA polymerase sigma fa 24.5 1.1E+02 0.0039 22.7 5.0 29 309-338 50-78 (92)
354 2w48_A Sorbitol operon regulat 24.4 1.6E+02 0.0053 27.6 7.1 45 304-349 11-57 (315)
355 3k2z_A LEXA repressor; winged 24.2 1.7E+02 0.0056 25.3 6.8 34 312-346 24-57 (196)
356 1q1h_A TFE, transcription fact 24.2 76 0.0026 24.5 4.1 34 312-346 33-66 (110)
357 1r1t_A Transcriptional repress 23.9 2.4E+02 0.008 22.4 7.2 37 311-348 58-94 (122)
358 2hr3_A Probable transcriptiona 23.8 2.7E+02 0.0092 21.9 11.3 39 310-349 48-86 (147)
359 2dk5_A DNA-directed RNA polyme 23.6 88 0.003 24.0 4.2 36 312-348 36-71 (91)
360 4ev0_A Transcription regulator 23.5 75 0.0026 27.1 4.4 43 311-358 162-204 (216)
361 2p7v_B Sigma-70, RNA polymeras 23.5 1.2E+02 0.0041 21.1 4.7 28 311-339 24-51 (68)
362 2xm6_A Protein corresponding t 22.9 80 0.0027 31.0 4.9 16 190-205 416-431 (490)
363 3ryp_A Catabolite gene activat 22.7 82 0.0028 26.7 4.4 32 312-344 167-198 (210)
364 1om2_A Protein (mitochondrial 22.1 62 0.0021 25.4 3.0 39 182-223 25-64 (95)
365 2lkp_A Transcriptional regulat 22.1 2.7E+02 0.0091 21.4 7.1 45 311-358 44-88 (119)
366 3e97_A Transcriptional regulat 22.1 87 0.003 27.1 4.5 42 311-357 174-215 (231)
367 3d0s_A Transcriptional regulat 22.0 85 0.0029 27.1 4.5 42 312-358 177-218 (227)
368 2zcw_A TTHA1359, transcription 22.0 87 0.003 26.6 4.4 43 311-358 145-187 (202)
369 2gau_A Transcriptional regulat 22.0 87 0.003 27.2 4.5 43 311-358 179-221 (232)
370 3u64_A Protein TP_0956; tetrat 21.8 1.8E+02 0.0062 27.6 6.8 81 125-209 186-272 (301)
371 2vxz_A Pyrsv_GP04; viral prote 21.7 1.5E+02 0.0051 25.3 5.4 55 299-356 12-67 (165)
372 3la7_A Global nitrogen regulat 21.6 88 0.003 27.6 4.5 44 311-359 192-235 (243)
373 3iwz_A CAP-like, catabolite ac 21.5 88 0.003 27.0 4.4 42 312-358 187-228 (230)
374 3hrs_A Metalloregulator SCAR; 21.5 88 0.003 27.7 4.4 50 305-358 13-62 (214)
375 1j5y_A Transcriptional regulat 21.3 1.6E+02 0.0054 25.3 6.0 33 312-345 36-69 (187)
376 2fmy_A COOA, carbon monoxide o 21.3 91 0.0031 26.8 4.5 44 311-358 166-209 (220)
377 3e6c_C CPRK, cyclic nucleotide 21.2 1.7E+02 0.0057 25.7 6.3 33 311-344 176-208 (250)
378 3b02_A Transcriptional regulat 20.8 76 0.0026 26.8 3.8 43 311-358 138-180 (195)
379 2ek5_A Predicted transcription 20.8 1.6E+02 0.0053 23.9 5.5 44 310-356 25-69 (129)
380 4fx0_A Probable transcriptiona 20.5 2.7E+02 0.0093 22.5 7.1 40 311-352 51-90 (148)
381 2k9m_A RNA polymerase sigma fa 20.5 75 0.0026 26.2 3.4 25 310-335 37-61 (130)
382 2b0l_A GTP-sensing transcripti 20.5 94 0.0032 24.2 3.9 47 310-357 40-87 (102)
383 3bqo_A Telomeric repeat-bindin 20.3 1E+02 0.0036 27.5 4.4 21 185-205 125-145 (211)
384 1klx_A Cysteine rich protein B 20.2 86 0.003 25.0 3.8 56 146-206 31-90 (138)
385 1p6r_A Penicillinase repressor 20.1 2.5E+02 0.0085 20.1 7.1 38 310-348 21-62 (82)
No 1
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-58 Score=476.24 Aligned_cols=346 Identities=19% Similarity=0.155 Sum_probs=215.9
Q ss_pred ccccccccCcchhhHHHHHHHhhccccccchhhhccHH--HHHHHHHhhCCchhhhcchHHHHHHHHHHHHHHHHhhcc-
Q 014453 42 LLSFLDQLDPSKHSLGYLYFLEPCMYCSITKERANTLV--PIIARFITSCSAEQIRYVPEKFINVCKRYKDQVLLLEAP- 118 (424)
Q Consensus 42 ~~~~L~~ldp~~~sl~~l~ll~~~~~~~~~~~~~~~l~--~~~~~fl~~fd~~Q~r~~~~~~~~l~~~~~~~~~~~~~~- 118 (424)
..+++|++|.++|.|.++|+++.+....+. ...+.++ +++ ..++|+++|.+.+++|||+++++|..++
T Consensus 127 ~~~~~pE~~~y~~lL~~i~L~d~k~~~~~~-~~~~~~~~~~~l--------~~~nrrtlD~l~ak~~fY~s~~~e~~~~~ 197 (523)
T 4b4t_S 127 TIEVTAEINCFMHLLVQLFLWDSKELEQLV-EFNRKVVIPNLL--------CYYNLRSLNLINAKLWFYIYLSHETLARS 197 (523)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCChHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHHH--------HHHhHHhHHHHHHHHHHHHHHHHHHhccc
Confidence 356899999999999999999999876552 2333333 233 4459999999999999999999886542
Q ss_pred ------------ccch--HHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhcccccccccc--CchhhHHHHHH
Q 014453 119 ------------IRGV--GPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--LPRDFFLYCYY 182 (424)
Q Consensus 119 ------------~~~i--~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~--~~~~~l~Y~YY 182 (424)
+|+. ..+|+|++|. +..+.+++|.+++|+||..+.|++|.++++|..|+.. ..+++++|+||
T Consensus 198 ~~~~~~~~~~~~ir~~Ll~~~rta~lr~--D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY 275 (523)
T 4b4t_S 198 SEEINSDNQNIILRSTMMKFLKIASLKH--DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFY 275 (523)
T ss_dssp -----CHHHHHHHHTHHHHHHHHCCSCS--SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHH
T ss_pred ccccccccchhhHHHHHHHHHHHHhccc--CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHH
Confidence 2332 3478888664 4567899999999999999999999999999988643 24688999999
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhc-ccCcc-ccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhccHHHHHHH
Q 014453 183 GGMIFIGQKRFRKALELLHNVVT-APMSS-INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQPYMELV 260 (424)
Q Consensus 183 ~G~I~~~~~~y~~A~~~~~~a~~-~P~~~-~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k~~~~~Y~~L~ 260 (424)
.|+|++.+++|.+|.++|..|++ ||... ..++.+.++|++|+|.||+ |++| + ++.+.++.+++.+.||.+|+
T Consensus 276 ~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLl-G~iP-~----r~lf~q~~l~~~L~pY~~Lv 349 (523)
T 4b4t_S 276 LSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLM-GDIP-E----LSFFHQSNMQKSLLPYYHLT 349 (523)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHH-TCCC-C----HHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhc-CCCC-C----hHHhhchhHHHHHHHHHHHH
Confidence 99999999999999999999998 88764 5688999999999999997 9999 3 56777777778899999999
Q ss_pred HHHhcCCHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHc
Q 014453 261 NTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQD 340 (424)
Q Consensus 261 ~a~~~gdl~~~~~~l~~~~~~f~~Dgn~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~ 340 (424)
+||+.||+..|.+++++|++.|.+|||++||++|+.+|+|++|++++++|++||++|||.+++++|+++||++|++||.+
T Consensus 350 ~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~d 429 (523)
T 4b4t_S 350 KAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRD 429 (523)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999998789999999999999
Q ss_pred CceEEEEecCCCEEEEecCCCccChHHHHHHHHHHHHHHHHHHH-HHHHHhHHhh-cCHHHHHHhh
Q 014453 341 GEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMSLSK-KLTAMDELIS-CDPLYLGKAG 404 (424)
Q Consensus 341 G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~~i~~~~~L~~-~~~~~d~~l~-~~~~yi~~~~ 404 (424)
|.|+|+|||++|+|.|++.+|.|+|.||+.+|++||++|++|++ .+++|...-. .++++.++..
T Consensus 430 G~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vkaMryp~~~~~~~~~~~~~ 495 (523)
T 4b4t_S 430 GVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVSMRYPEDKKTQQNEKSEN 495 (523)
T ss_dssp TSSCCEECTTTCCEECCSSSCC--------------------------------------------
T ss_pred CCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999975 7999996433 3444444443
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.96 E-value=2.3e-29 Score=233.33 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=157.2
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhh
Q 014453 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKN 251 (424)
Q Consensus 173 ~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k~ 251 (424)
.++.++|+||.|++++.+++|.+|.++|..|++ ||.. ..+.+..++|++|+++|++ |++| +. .... .+
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~-~~~~k~~IL~yLIp~~Ll~-G~iP-~~-----~ll~-~~-- 78 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS-SQKNKRMILIYLLPVKMLL-GHMP-TV-----ELLK-KY-- 78 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHHHHT-TCEE-CH-----HHHH-HT--
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh-HHHHHHHHHHHHHHHHHHc-CCCC-CH-----HHhh-hC--
Confidence 468999999999999999999999999999999 8865 3566778999999999997 9998 43 2222 22
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHh--hhhcccHHHHHHHhCCC----
Q 014453 252 FSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQ--TYLTLSLQDIANTVQLN---- 325 (424)
Q Consensus 252 ~~~~Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~~Lv~~l~~~v~r~~I~~l~~--~Ys~Isl~~Ia~~l~l~---- 325 (424)
...+|.+|++|+++||+..|++++++|++.|.+||++.++++++..++|+.+|++.. .|++||+++|+.+++++
T Consensus 79 ~~~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~ 158 (203)
T 3t5x_A 79 HLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVED 158 (203)
T ss_dssp TCGGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTT
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCC
Confidence 235899999999999999999999999999999999999999999999999999987 59999999999999753
Q ss_pred -CHHHHHHHHHHhHHcCceEEEEecCCCEEEEecC
Q 014453 326 -SSKEAEMHVLQMIQDGEIFATINQKDGMVRFLED 359 (424)
Q Consensus 326 -~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~ 359 (424)
+.+|+|++|++||.+|.|+|+|||+.|+|+++..
T Consensus 159 ~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 159 VDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp CCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred CCHHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 5899999999999999999999999999888754
No 3
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.9e-26 Score=232.70 Aligned_cols=212 Identities=14% Similarity=0.173 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHccChHHHHhccccc----cc-ccc--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc--ccCcc--
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDD----IY-EIN--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT--APMSS-- 210 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~----i~-~~~--~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~--~P~~~-- 210 (424)
+-..++++|.+.++...|..++..- .. +++ +..+.++|+||.|++++.+++|.+|.++|..|++ ||..+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~ 257 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTN 257 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccc
Confidence 3456778999999988887776531 11 111 1368999999999999999999999999999997 68764
Q ss_pred --ccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhccHH-HHHHHHHHhcCCHHHHHHHHHHcccccccccc
Q 014453 211 --INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP-YMELVNTYNTGKIVELETYVQTNREKFESDNN 287 (424)
Q Consensus 211 --~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k~~~~~-Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn 287 (424)
..+.+..++|++|++.||+ |++| + ....++.+...+.+ |..|++|+++||+..|++++++|++.|.++|+
T Consensus 258 ~~~~~n~~~ILkyLIpv~LLl-G~~P-~-----~~ll~k~~~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gi 330 (455)
T 3t5v_B 258 QAITRNGTRILNYMIPTGLIL-GKMV-K-----WGPLRPFLSQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQL 330 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCB-C-----HHHHGGGSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTC
T ss_pred hhhhhHHHHHHHHHHHHHHHc-CCCC-C-----HHHHcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCC
Confidence 2456678999999999997 9998 2 22344433234666 99999999999999999999999999999999
Q ss_pred -hhHHHHHHHHHHHHHHHHH----Hhhh--hcccHHHHHHHhCC--------------------CCHHHHHHHHHHhHHc
Q 014453 288 -LGLVKQVVSSMYKRNIQRL----TQTY--LTLSLQDIANTVQL--------------------NSSKEAEMHVLQMIQD 340 (424)
Q Consensus 288 -~~Lv~~l~~~v~r~~I~~l----~~~Y--s~Isl~~Ia~~l~l--------------------~~~~eaE~~v~~mI~~ 340 (424)
+.++++++..|+|+.+|++ ...| ++|++++|+.++++ .+.+|+|++|++||.+
T Consensus 331 ly~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~ 410 (455)
T 3t5v_B 331 LIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINL 410 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 9999999999999999998 6668 89999999999974 2578999999999999
Q ss_pred CceEEEEecCCCEEEEecCC
Q 014453 341 GEIFATINQKDGMVRFLEDP 360 (424)
Q Consensus 341 G~I~A~Id~~~g~v~F~~~~ 360 (424)
|.|+|+|+|+.++|+++...
T Consensus 411 G~IkGyIsh~~~~lVlSK~~ 430 (455)
T 3t5v_B 411 GLLRANCFPQLQLCVVKKTT 430 (455)
T ss_dssp TSCCEEEETTTTEEEECCCS
T ss_pred CCeEEEEecCCCEEEECCCC
Confidence 99999999999999998763
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.1e-26 Score=239.67 Aligned_cols=243 Identities=10% Similarity=0.179 Sum_probs=180.2
Q ss_pred CCCcchHHHHHHHHHHHccChHHHHhccccc---cccc-cCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcccCccc
Q 014453 136 TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDD---IYEI-NLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSI 211 (424)
Q Consensus 136 ~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~---i~~~-~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P~~~~ 211 (424)
.....-.+...+|+|+..++|.+|..++.+. .+.. +.|.-.+.|+.|+|+++++.++|.+|+++|..++.+|....
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~ 252 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKS 252 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccC
Confidence 3456678999999999999999996555542 2222 23567899999999999999999999999999999998766
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh----hccHHHHHHHHHHhcCCHHHHHHHHHHcccccccccc
Q 014453 212 NAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK----NFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNN 287 (424)
Q Consensus 212 s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k----~~~~~Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn 287 (424)
++-...+..+.+++++++. |.++.++.++++.++ +.+++|..|+++|.++++..|..+++.+...+..|..
T Consensus 253 d~~~~~~~L~~~v~~~iLa-----~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~ 327 (445)
T 4b4t_P 253 DEAKWKPVLSHIVYFLVLS-----PYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDL 327 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHS-----SCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCS
T ss_pred CHHHHHHHHHHHHHHHHhC-----CCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccch
Confidence 6555444445555566664 344457888887765 3478899999999999999999999999887766543
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCC
Q 014453 288 -------LGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDP 360 (424)
Q Consensus 288 -------~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~ 360 (424)
-..+..+..++++||+++++++|++|++++||+.++++ ++++|..+++||.+|.|.|+|||++|+|+|..+.
T Consensus 328 ~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~ 406 (445)
T 4b4t_P 328 AFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPK 406 (445)
T ss_dssp SCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC----
T ss_pred hhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCC
Confidence 45789999999999999999999999999999999998 8999999999999999999999999999998765
Q ss_pred CccChHHHHHHHHHHHHHHHHHHHHHH
Q 014453 361 EQYKTCEMIEHIDSSIQRIMSLSKKLT 387 (424)
Q Consensus 361 ~~~~~~~~~~~~~~~i~~~~~L~~~~~ 387 (424)
+ +.+..+.|+.+|..++.+.+.+.
T Consensus 407 ~---~~~~l~~W~~~i~~l~~~v~k~~ 430 (445)
T 4b4t_P 407 N---SSQLLNEWSHNVDELLEHIETIG 430 (445)
T ss_dssp ---------------------------
T ss_pred C---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45788999999999888876553
No 5
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.91 E-value=1.1e-23 Score=213.00 Aligned_cols=256 Identities=14% Similarity=0.216 Sum_probs=191.3
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccc---cc-cCchhhHHHHHHHHHHHH-hhhcHHHH
Q 014453 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIY---EI-NLPRDFFLYCYYGGMIFI-GQKRFRKA 196 (424)
Q Consensus 122 i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~---~~-~~~~~~l~Y~YY~G~I~~-~~~~y~~A 196 (424)
+..++.-+.++| ++..+--+|..-.+.+...+++..+-..+.+.-. .+ .+|.-...+..++|++++ ..++|.+|
T Consensus 122 i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 122 GAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHH
Confidence 444556665554 3567788899999999999998877666554311 11 337788999999999999 89999999
Q ss_pred HHHHHHHhcccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcc-cCHHHhhhhhhccHHHHHHHHHHhcCCHHHHHHHH
Q 014453 197 LELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKY-TSSAAQRNLKNFSQPYMELVNTYNTGKIVELETYV 275 (424)
Q Consensus 197 ~~~~~~a~~~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~-~s~~~~~~~k~~~~~Y~~L~~a~~~gdl~~~~~~l 275 (424)
..+|..++++.....++...+++|+.+|+.|+. +..+ .+.+- .+....+...+...+|.+|+.+|..+|+..|..++
T Consensus 201 ~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~-~~r~-el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL 278 (394)
T 3txn_A 201 FSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML-GQSD-DVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAAL 278 (394)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT-TCGG-GHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHc-CCHH-HHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999777777777788999999988886 5544 23110 00111111123467799999999999999999999
Q ss_pred HHcccccccccchh-HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEE
Q 014453 276 QTNREKFESDNNLG-LVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMV 354 (424)
Q Consensus 276 ~~~~~~f~~Dgn~~-Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v 354 (424)
+.+++.|..|.... .+..+++++++++++++.++|++|++++||+.+|++ ++++|..|++||.+|.|+|+||+++|+|
T Consensus 279 ~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv 357 (394)
T 3txn_A 279 KEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVL 357 (394)
T ss_dssp HHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEE
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEE
Confidence 99999999999864 589999999999999999999999999999999996 9999999999999999999999999999
Q ss_pred EEecCCC---ccCh-HHHHHHHHHHHHHHHH
Q 014453 355 RFLEDPE---QYKT-CEMIEHIDSSIQRIMS 381 (424)
Q Consensus 355 ~F~~~~~---~~~~-~~~~~~~~~~i~~~~~ 381 (424)
+|.+++. .|.. -+..++|...|..+.+
T Consensus 358 ~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~ 388 (394)
T 3txn_A 358 IVFEETPVDKTYERVLETIQSMGKVVDTLYQ 388 (394)
T ss_dssp EECCC--------------------------
T ss_pred EECCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9987643 2222 2455556655555443
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.1e-17 Score=171.62 Aligned_cols=276 Identities=14% Similarity=0.075 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhcccccc--c-cccCchhhH
Q 014453 101 FINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI--Y-EINLPRDFF 177 (424)
Q Consensus 101 ~~~l~~~~~~~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i--~-~~~~~~~~l 177 (424)
...++++|.+ .|.--.|+..+..+ +....++.+.-.+...++|+|+..++|..|...+.+.- . ..+.+....
T Consensus 134 ~~~la~~~~~----~Gd~~~A~~~~~~~-~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 134 WINLGEYYAQ----IGDKDNAEKTLGKS-LSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CHHHHHHHHH----HCCCTTHHHHHHHH-HHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHH----cCCHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3445556654 34444555555553 23345566777889999999999999999988888742 1 122255677
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHhcccCccccHHHHHHHHHHHHHHHHhcCCCC---CCCCcccCHHHhhhhh--hc
Q 014453 178 LYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFS---STLPKYTSSAAQRNLK--NF 252 (424)
Q Consensus 178 ~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~---~p~p~~~s~~~~~~~k--~~ 252 (424)
+|..|+|+++++.++|.+|..+|..++.+++.....-.....++.+|++++...... +.+ .++....... +.
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~---~~~~~~~~l~~~p~ 285 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVI---DSPELLSLISTTAA 285 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSS---SSHHHHHGGGSHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHh---cCHHHHhhccCChh
Confidence 899999999999999999999999999988765444345666777788877521100 000 1111122111 23
Q ss_pred cHHHHHHHHHHhcCCHHHH-HHHHHHcccccccccch-hHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHH
Q 014453 253 SQPYMELVNTYNTGKIVEL-ETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEA 330 (424)
Q Consensus 253 ~~~Y~~L~~a~~~gdl~~~-~~~l~~~~~~f~~Dgn~-~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~ea 330 (424)
+.++..++.+|-.++...| ...++.+...+..|... ..+..+..+++.+++..+.++|++|+++.+|+.+|++ ++++
T Consensus 286 ~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~ 364 (429)
T 4b4t_R 286 LQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFL 364 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHH
Confidence 4567788888888887775 45566667777766543 4688999999999999999999999999999999998 9999
Q ss_pred HHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 014453 331 EMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMSLSKKLTAMDE 391 (424)
Q Consensus 331 E~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~~i~~~~~L~~~~~~~d~ 391 (424)
|..+++||.+|.|+|+||+.+|+|.+.++.+. ...+++-++..-.|.+.++.+..
T Consensus 365 E~~L~~lI~~g~l~akID~~~giv~~~~~d~~------~~~y~~~i~~gd~Ll~riqkl~~ 419 (429)
T 4b4t_R 365 DNDLGKFIPNKQLNCVIDRVNGIVETNRPDNK------NAQYHLLVKQGDGLLTKLQKYGA 419 (429)
T ss_dssp HHHHHHHHHHTSSCEEEETTTTEEEECC---------------------------------
T ss_pred HHHHHHHHHcCCeEEEEcCCCCEEEECCCCch------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999876442 11233334444444444444433
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.5e-17 Score=165.06 Aligned_cols=242 Identities=11% Similarity=0.183 Sum_probs=182.5
Q ss_pred HHhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhcccccccc---cc-CchhhHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---IN-LPRDFFLYCYYGGMI 186 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~---~~-~~~~~l~Y~YY~G~I 186 (424)
.+.+..-.++..+..++..... +.......+..+.++|+..++|..|..++.+.... ++ ++.....++.++|.+
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3445555566666666544322 34556678999999999999999998888764321 12 235678999999999
Q ss_pred HHhhhcHHHHHHHHHHHhcccCcc----ccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCH-HHhhhh-----hhccHHH
Q 014453 187 FIGQKRFRKALELLHNVVTAPMSS----INAIAVEAYKKYILVSLIHHGQFSSTLPKYTSS-AAQRNL-----KNFSQPY 256 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~~P~~~----~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~-~~~~~~-----k~~~~~Y 256 (424)
+...++|.+|..+|..++..+... .......+.+..++...+. +... .... +..+.. ......|
T Consensus 226 ~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 299 (434)
T 4b4t_Q 226 HCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIML-NLID-----DVKNILNAKYTKETYQSRGIDAM 299 (434)
T ss_dssp TTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH-TCHH-----HHHHHHHCSSSSTTCCCHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-cchh-----HHHhHHHHHHHHHHhcchhhhHH
Confidence 999999999999999999854321 1233445656656655543 1111 1111 111100 1234678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcccccccccch-hHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHH
Q 014453 257 MELVNTYNTGKIVELETYVQTNREKFESDNNL-GLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL 335 (424)
Q Consensus 257 ~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~-~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~ 335 (424)
..++.+|..+++..|...+..+...+..|... ..+..+..++++++++.+.++|++|++++||+.++++ ++++|..|+
T Consensus 300 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E~~l~ 378 (434)
T 4b4t_Q 300 KAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVEGKLS 378 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHHHHHH
Confidence 99999999999999999999999999988864 6789999999999999999999999999999999997 899999999
Q ss_pred HhHHcCceEEEEecCCCEEEEecCCC
Q 014453 336 QMIQDGEIFATINQKDGMVRFLEDPE 361 (424)
Q Consensus 336 ~mI~~G~I~A~Id~~~g~v~F~~~~~ 361 (424)
+||.+|.|.|+||+.+|+|.|.++.+
T Consensus 379 ~lI~~~~i~a~id~~~g~v~~~~~~~ 404 (434)
T 4b4t_Q 379 QMILDKIFYGVLDQGNGWLYVYETPN 404 (434)
T ss_dssp HHHHHTSSCCEEETTTTEEECC----
T ss_pred HHHhCCCcceecccccCeEeeCCCcc
Confidence 99999999999999999999987644
No 8
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.7e-13 Score=138.98 Aligned_cols=210 Identities=13% Similarity=0.095 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHccChHHHHhcccccccc---cc--CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhccc--CccccHH
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYE---IN--LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP--MSSINAI 214 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~---~~--~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P--~~~~s~i 214 (424)
+-....++++..++...|..++++.-.. .+ .+.-...|++..|..+...++|..++.++...+.+. ....+..
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~ 208 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLA 208 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHH
Confidence 4456778889999999998888875221 11 145678888889999999999999999999998743 3444555
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccCHHHh-hhh---h--hccHHHHHHHHHHhcCCHHHHHHHHHHcccccccccch
Q 014453 215 AVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQ-RNL---K--NFSQPYMELVNTYNTGKIVELETYVQTNREKFESDNNL 288 (424)
Q Consensus 215 ~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~-~~~---k--~~~~~Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~ 288 (424)
...+.+..++++.|+...++ ++ +.++. +.. + ....+|.+|.++|..||+..|...++.+.+.+..-+.
T Consensus 209 ~~~~~a~~l~~~all~~~i~-~f----~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~- 282 (393)
T 4b4t_O 209 ERQQLAYDLSISALLGDKIY-NF----GELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQ- 282 (393)
T ss_dssp HHHHHHHHHHHHHHHCCSSC-ST----HHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHH-
T ss_pred HHHHHHHHHHHHHHcCCCCC-Ch----HHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhh-
Confidence 55566666777777755555 44 33333 222 1 2245789999999999999999887665443311110
Q ss_pred hHHHHHHHHHHHHHHHHHH--hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecC
Q 014453 289 GLVKQVVSSMYKRNIQRLT--QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLED 359 (424)
Q Consensus 289 ~Lv~~l~~~v~r~~I~~l~--~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~ 359 (424)
-...+++.+.-..+..+. +.|.+|++++|++.++++ ++|+|.+|.+||.+|.|.|+|||.+|+|.+...
T Consensus 283 -~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~ 353 (393)
T 4b4t_O 283 -HESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKGSIDQVNELVTISWV 353 (393)
T ss_dssp -HHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSSCEETTTTEECC---
T ss_pred -hHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEec
Confidence 011122222222333333 457899999999999997 899999999999999999999999999999854
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.43 E-value=1.5e-13 Score=108.90 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCC
Q 014453 291 VKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDP 360 (424)
Q Consensus 291 v~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~ 360 (424)
+..|..++++|+++.++++|++|+++++|+.++++ ++++|.++++||.+|.|.|+||+++|+|.|.++.
T Consensus 9 ~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e 77 (84)
T 1ufm_A 9 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE 77 (84)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcc
Confidence 33457899999999999999999999999999998 9999999999999999999999999999997643
No 10
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.09 E-value=2e-09 Score=101.12 Aligned_cols=181 Identities=12% Similarity=0.044 Sum_probs=132.7
Q ss_pred HHHHHHHccChHHHHhccccc--------cccccC-c--hhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc--cc
Q 014453 146 FLQLCLLAKCYKAGLSVLEDD--------IYEINL-P--RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS--SI 211 (424)
Q Consensus 146 l~rlcL~~~~y~~Al~il~~~--------i~~~~~-~--~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~--~~ 211 (424)
-++-.+..++|+.|.++|++- ++.-.. + ..+.++-|+.|.+.+.+.++.++++-+...++ .|.. ..
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 345667889999999998872 221111 1 24689999999999999888888888887777 6654 23
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh-----h--hccHHHHHHHHHHhcCCHHHHHHHHHHccccccc
Q 014453 212 NAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL-----K--NFSQPYMELVNTYNTGKIVELETYVQTNREKFES 284 (424)
Q Consensus 212 s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~-----k--~~~~~Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~ 284 (424)
++.+.+..+..+|+.| ..|.++ .+ ...+.... + +.+.++.++.+++..||..+|-...++...
T Consensus 93 s~~~~e~~~~~LL~lL-~~~~~~-ef----~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~---- 162 (229)
T 4b0z_A 93 SSRMGLVTGLNLLYLL-SENRIA-EF----HTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNF---- 162 (229)
T ss_dssp CTTHHHHHHHHHHHHH-HTTCHH-HH----HHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCC----
T ss_pred CccHHHHHHHHHHHHH-HcCCch-HH----HHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCcc----
Confidence 4555566666666655 468887 32 22222211 1 124567789999999999999888765422
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHH
Q 014453 285 DNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ 336 (424)
Q Consensus 285 Dgn~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~ 336 (424)
....-++..+..+++...++.+.++|.+||++++++.|+++|++|++.++.+
T Consensus 163 ~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~ 214 (229)
T 4b0z_A 163 PEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEE 214 (229)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence 1223478889999999999999999999999999999999999999998887
No 11
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.21 E-value=7.7e-06 Score=72.86 Aligned_cols=97 Identities=10% Similarity=0.181 Sum_probs=77.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHH
Q 014453 253 SQPYMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEM 332 (424)
Q Consensus 253 ~~~Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~ 332 (424)
-.+|.+|.++|..|++..|....+.+ -+|...+.+-++.=.+..++..-..||.++|++.+++++.+|+|.
T Consensus 59 ~~~~~~LL~iF~~G~~~~y~~~~~~~---------p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~ 129 (169)
T 3chm_A 59 DSVYLDLLRLFAHGTWGDYKCNATRL---------PHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELED 129 (169)
T ss_dssp THHHHHHHHHHHHCCHHHHHHHGGGS---------CCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHH
T ss_pred hhHHHHHHHHHhcCCHHHHHHhHHhC---------cchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHH
Confidence 36799999999999999998743221 133344444444444555555678999999999999998999999
Q ss_pred HHH-HhHHcCceEEEEecCCCEEEEec
Q 014453 333 HVL-QMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 333 ~v~-~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
+|. ++|..|.|.|+||+.++.|....
T Consensus 130 lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 130 FLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 999 99999999999999999888764
No 12
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.72 E-value=0.012 Score=47.14 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=70.3
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..++.. .|+.......+..+..++...++|+.|...+.+-+-..+........+|..|.++...++|
T Consensus 14 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 14 KNGKYDDASQLFLSFLEL-YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCH
Confidence 455556677777777644 5554333356778888999999999999998886542222222356678899999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 93 ~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 93 TEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 999999999998 7765
No 13
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.28 E-value=0.055 Score=46.38 Aligned_cols=127 Identities=7% Similarity=-0.022 Sum_probs=88.8
Q ss_pred hccHHHHHHHHHhhCCchh--hhcchHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 014453 75 ANTLVPIIARFITSCSAEQ--IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL 152 (424)
Q Consensus 75 ~~~l~~~~~~fl~~fd~~Q--~r~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~ 152 (424)
.+.+...+.+|+.....-+ +...|+-..++. .........+..-.++..++.|+ .++|.. ...|..+-..+..
T Consensus 8 ~~~~~~~l~~~~~~~~~l~~al~l~p~~~~~~~-~lg~~~~~~g~~~eA~~~~~~al-~~~P~~---~~~~~~lg~~~~~ 82 (151)
T 3gyz_A 8 NESISTAVIDAINSGATLKDINAIPDDMMDDIY-SYAYDFYNKGRIEEAEVFFRFLC-IYDFYN---VDYIMGLAAIYQI 82 (151)
T ss_dssp -CHHHHHHHHHHHTSCCTGGGCCSCHHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHH
Confidence 3455667777776443221 344555444432 23333446677778888899887 457754 3467788889999
Q ss_pred ccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 153 ~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.++|+.|+....+.+- ++ | +....+|..|.++...++|.+|..+|+.++. .|..
T Consensus 83 ~g~~~~Ai~~~~~al~-l~-P-~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 83 KEQFQQAADLYAVAFA-LG-K-NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp TTCHHHHHHHHHHHHH-HS-S-SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HccHHHHHHHHHHHHh-hC-C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 9999999999888653 22 2 2345677889999999999999999999999 7764
No 14
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.14 E-value=0.041 Score=45.12 Aligned_cols=90 Identities=10% Similarity=0.062 Sum_probs=70.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..|+ .++|.. ...|..+..++...++|+.|+...++.+- ++ .+....++..|.++..+++|
T Consensus 25 ~~g~~~~A~~~~~~al-~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~--p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 25 KKGDYPTAMRHYNEAV-KRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIR-LD--SKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp HTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hh--hhhhHHHHHHHHHHHHCCCH
Confidence 4555566788888887 456653 45678888899999999999998888653 22 23456778899999999999
Q ss_pred HHHHHHHHHHhc-ccCcc
Q 014453 194 RKALELLHNVVT-APMSS 210 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~~ 210 (424)
.+|..+|+.++. .|...
T Consensus 98 ~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 999999999999 88764
No 15
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.13 E-value=0.042 Score=45.57 Aligned_cols=91 Identities=4% Similarity=-0.135 Sum_probs=69.5
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..++.++. ++|+. ...+..+..++...++|+.|+..+.+.+-- + | +....+|..|.++...++
T Consensus 29 ~~~g~~~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 29 YQAGKWDDAQKIFQALCM-LDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALM-D-I-NEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCTHHHHHHHHHHHHTTC
T ss_pred HHHccHHHHHHHHHHHHH-hCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-C-CCcHHHHHHHHHHHHcCC
Confidence 355666677888888874 56653 346778888999999999999998886532 1 1 234566788999999999
Q ss_pred HHHHHHHHHHHhc-ccCcc
Q 014453 193 FRKALELLHNVVT-APMSS 210 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~~ 210 (424)
|.+|..+|+.++. .|...
T Consensus 102 ~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 9999999999998 77653
No 16
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.13 E-value=0.045 Score=46.17 Aligned_cols=92 Identities=3% Similarity=-0.131 Sum_probs=70.3
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
.....+..-.++..++.|+ .++|.. ...|..+..++...++|+.|+..+.+.+-- + | +....+|+.|.++...
T Consensus 30 ~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~-p-~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 30 NQYQSGXYEDAHXVFQALC-VLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVM-D-I-XEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-T-TCTHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHH-HcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-C-CCchHHHHHHHHHHHc
Confidence 3345666677888888887 456653 456777888999999999999998886431 1 2 2345677889999999
Q ss_pred hcHHHHHHHHHHHhc-ccCc
Q 014453 191 KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~ 209 (424)
++|.+|..+|..++. .|..
T Consensus 103 g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANX 122 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHCcCC
Confidence 999999999999998 7764
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.04 E-value=0.057 Score=45.69 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=71.2
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+. ++|+. ...+..+..+++..++|+.|+..+.+.+-- + | +....+|..|.++...++|
T Consensus 23 ~~g~~~~A~~~~~~al~-~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 23 ARKEYSKAIDLYTQALS-IAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVV-D-P-KYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HTTCHHHHHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-hCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHccCH
Confidence 45556667888888874 55543 457888889999999999999988886532 1 1 2466788899999999999
Q ss_pred HHHHHHHHHHhc-ccCccc
Q 014453 194 RKALELLHNVVT-APMSSI 211 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~~~ 211 (424)
.+|..+|..++. .|....
T Consensus 96 ~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 96 KGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhCCCchH
Confidence 999999999999 787643
No 18
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.87 E-value=0.21 Score=45.47 Aligned_cols=96 Identities=16% Similarity=0.047 Sum_probs=74.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHh----
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~---- 189 (424)
..++.-.++..+..++. ..|+.......+..+..++...++|+.|+..+++-+-..+.......-+|..|.++..
T Consensus 27 ~~g~~~~A~~~~~~~l~-~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFT-YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp HTTCHHHHHHHHHHHGG-GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred HhCCHHHHHHHHHHHHH-hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 45566677888888764 4565544456788889999999999999999988654333223445667889999999
Q ss_pred ----hhcHHHHHHHHHHHhc-ccCcc
Q 014453 190 ----QKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 190 ----~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.++|.+|...|..++. .|...
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred ccccchhHHHHHHHHHHHHHHCcCch
Confidence 9999999999999998 78753
No 19
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.84 E-value=0.13 Score=40.29 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=66.7
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++.. .|+. ...+..+..++...++|+.|+..+.+.+-.. | .....++..|.++...++|
T Consensus 24 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 24 KVENFEAAVHFYGKAIEL-NPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICID--P-AYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHHc-CCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--c-cCHHHHHHHHHHHHHhCCH
Confidence 345555677777777643 4433 3467788889999999999999888865321 2 2345677889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 97 ~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 999999999998 6764
No 20
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.69 E-value=0.029 Score=45.65 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=68.4
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++ ++.|+.......+..+..++...++|+.|+..+.+.+-. + | +....++..|.++...++|
T Consensus 40 ~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~-~~~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 40 KCGDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-D-G-GDVKALYRRSQALEKLGRL 115 (148)
T ss_dssp TTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-S-CCHHHHHHHHHHHHHHTCH
T ss_pred HhCCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-C-c-cCHHHHHHHHHHHHHcCCH
Confidence 3455556777777776 345543223566778888899999999999888875432 1 2 2356778889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 116 ~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 116 DQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCCc
Confidence 999999999998 6765
No 21
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.68 E-value=0.021 Score=45.67 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=66.1
Q ss_pred hccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHH
Q 014453 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (424)
Q Consensus 116 ~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~ 195 (424)
+..-.++..++.|+. +.++.......+..+..++...++|+.|+..+.+.+-.. |. ....++..|.++...++|.+
T Consensus 4 g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PN-HQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ---CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHHHTCHHH
T ss_pred CcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-chHHHHHHHHHHHHcCCHHH
Confidence 445567788888863 321112335678888899999999999999998865321 22 35667788999999999999
Q ss_pred HHHHHHHHhc-ccCc
Q 014453 196 ALELLHNVVT-APMS 209 (424)
Q Consensus 196 A~~~~~~a~~-~P~~ 209 (424)
|..+|..++. .|..
T Consensus 80 A~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 80 GVELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 9999999998 6765
No 22
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.073 Score=42.63 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=67.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+. ++|+. ...+..+...+...++|+.|+..+.+.+-- + | +....++..|.++...++|
T Consensus 16 ~~~~~~~A~~~~~~al~-~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMIK-RAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEK-D-P-NFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHH-hCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-C-CcHHHHHHHHHHHHHHhCH
Confidence 45555667788888874 56653 467888889999999999999988886532 2 2 2456778899999999999
Q ss_pred HHHHHHHHHHhc-cc
Q 014453 194 RKALELLHNVVT-AP 207 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P 207 (424)
.+|..+|..++. .|
T Consensus 89 ~~A~~~~~~al~~~p 103 (126)
T 3upv_A 89 ASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999998 63
No 23
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.62 E-value=0.026 Score=47.66 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=62.3
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHH
Q 014453 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (424)
Q Consensus 120 ~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~ 199 (424)
++|..+..|+. .+| .-...+..+.+++...++|+.|+..+.+.+- ++ | +....++..|.++...++|.+|..+
T Consensus 15 ~ai~~~~~a~~-~~p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~-p-~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 15 RYIASVQGSTP-SPR---QKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQ-E-RDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHSC-SHH---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcc-cCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHcCchHHHHHH
Confidence 44555555542 122 2234577888999999999999999988653 22 2 3456778889999999999999999
Q ss_pred HHHHhc-ccCcc
Q 014453 200 LHNVVT-APMSS 210 (424)
Q Consensus 200 ~~~a~~-~P~~~ 210 (424)
|..++. .|...
T Consensus 88 ~~~al~~~p~~~ 99 (150)
T 4ga2_A 88 YRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHHHhCCCCH
Confidence 999999 78753
No 24
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.53 E-value=0.061 Score=43.68 Aligned_cols=89 Identities=8% Similarity=-0.049 Sum_probs=65.7
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..++.|+. ++|+. ...|..+-.++...++++.|+..+.+.+- ++ | +....++..|.++...++|
T Consensus 29 ~~g~~~~A~~~~~~al~-~~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~-P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 29 KLANLAEAALAFEAVCQ-KEPER---EEAWRSLGLTQAENEKDGLAIIALNHARM-LD-P-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HTTCHHHHHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHcCCH
Confidence 45566677888888874 46653 45677888889999999999998887543 22 2 2445678889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|+.++. .|..
T Consensus 102 ~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhCcCC
Confidence 999999999998 6653
No 25
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.35 E-value=0.15 Score=40.27 Aligned_cols=90 Identities=12% Similarity=0.067 Sum_probs=67.9
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..+..++. .+|.. ...+..+..++...++|+.|+..+.+.+-.. | .....++..|.++...++
T Consensus 27 ~~~~~~~~A~~~~~~al~-~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 27 FQKGDYPQAMKHYTEAIK-RNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLE--P-TFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHTTCSHHHHHHHHHHHT-TCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHH-cCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-CchHHHHHHHHHHHHHhh
Confidence 345666677788888863 34432 4567778888889999999999888865321 1 245567788999999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|.+|..+|..++. .|..
T Consensus 100 ~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 9999999999998 6764
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.34 E-value=0.3 Score=45.69 Aligned_cols=170 Identities=10% Similarity=-0.014 Sum_probs=105.0
Q ss_pred HHhhccccchHHHHHHHHhhCCCCC--CcchHHHHHHHHHHHc-cChHHHHhcccccccccc---CchhhHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMI 186 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~--~lT~~h~~l~rlcL~~-~~y~~Al~il~~~i~~~~---~~~~~l~Y~YY~G~I 186 (424)
...+.+-.++..+..|+.-....+. .....+..+-.++... ++|+.|+....+.+--.+ .+......+.-.|.+
T Consensus 88 ~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~ 167 (292)
T 1qqe_A 88 KSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL 167 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3556677788888888754432221 1224566777778885 999999988887543111 112234556677999
Q ss_pred HHhhhcHHHHHHHHHHHhc-ccCccccH-HHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hccHHH
Q 014453 187 FIGQKRFRKALELLHNVVT-APMSSINA-IAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NFSQPY 256 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~-~P~~~~s~-i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k--------~~~~~Y 256 (424)
+..+++|.+|..+|..++. .|...... ...+++-.+.++.+- .|+.. . .-....+..+ .....+
T Consensus 168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~-~----A~~~~~~al~l~p~~~~~~~~~~l 241 (292)
T 1qqe_A 168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLA-ATDAV-A----AARTLQEGQSEDPNFADSRESNFL 241 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHH-TTCHH-H----HHHHHHGGGCC---------HHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHH-cCCHH-H----HHHHHHHHHhhCCCCCCcHHHHHH
Confidence 9999999999999999998 66543211 122344444444433 35543 1 0111111111 012235
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcccccccccch
Q 014453 257 MELVNTYNTGKIVELETYVQTNREKFESDNNL 288 (424)
Q Consensus 257 ~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~ 288 (424)
..+..++..+|...|...+..+.....-|...
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 67888999899999999999987776656543
No 27
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.28 E-value=0.075 Score=42.80 Aligned_cols=88 Identities=9% Similarity=-0.022 Sum_probs=67.7
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+. ++|+. ...+..+..++...++|+.|+..+.+.+-. + .+....++..|.++...++|
T Consensus 21 ~~~~~~~A~~~~~~al~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 21 VGRKYPEAAACYGRAIT-RNPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-D--GQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCH
T ss_pred HhCcHHHHHHHHHHHHh-hCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--chhHHHHHHHHHHHHHHhhH
Confidence 45555667777888764 45543 457888889999999999999888875432 1 12456778899999999999
Q ss_pred HHHHHHHHHHhc-ccC
Q 014453 194 RKALELLHNVVT-APM 208 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~ 208 (424)
.+|..+|..++. .|.
T Consensus 94 ~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 94 DEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHChh
Confidence 999999999998 676
No 28
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.21 E-value=0.068 Score=42.23 Aligned_cols=82 Identities=12% Similarity=0.058 Sum_probs=62.3
Q ss_pred chHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 014453 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (424)
Q Consensus 121 ~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~ 200 (424)
++..+..++ +.+|+. ...+..+..++...++|+.|+..+.+.+-. + | +....++..|.++...++|.+|..+|
T Consensus 4 a~~~~~~al-~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAML-AQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDF-D-P-TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHH-TTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHH-C-C-CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566665 345543 456888889999999999999998886532 1 2 24556788899999999999999999
Q ss_pred HHHhc-ccCc
Q 014453 201 HNVVT-APMS 209 (424)
Q Consensus 201 ~~a~~-~P~~ 209 (424)
+.++. .|..
T Consensus 77 ~~al~~~~~~ 86 (115)
T 2kat_A 77 ESGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhcccc
Confidence 99998 6654
No 29
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=95.12 E-value=1.2 Score=40.39 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=75.9
Q ss_pred HhhccccchHHHHHHHHhhCCCC-CCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHHh
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIG 189 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~-~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~~ 189 (424)
..+..-.++..+..|+.. +|.. ......+..+...+...++|+.|+..+.+.+-.. +.+......++..|.++..
T Consensus 17 ~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 455666778888888754 4432 2234567788889999999999999887753211 1133457778889999999
Q ss_pred hhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHH
Q 014453 190 QKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iL 224 (424)
.++|.+|..+|..++. .|..........++..+..
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 131 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 131 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 9999999999999998 5654332223344444333
No 30
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.11 E-value=0.055 Score=45.67 Aligned_cols=68 Identities=12% Similarity=-0.007 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
...|..+...++..++|+.|+...++.+- ++ ......+|..|.++..+++|.+|..+|..++. .|...
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~-~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLK-RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHh-cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 45788888899999999999988887653 22 23566788899999999999999999999999 78753
No 31
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.02 E-value=0.2 Score=38.37 Aligned_cols=89 Identities=10% Similarity=-0.045 Sum_probs=66.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..++. .+|+. ...+..+..++...++|+.|...+.+.+-.. | .....++..|.++...++|
T Consensus 16 ~~~~~~~A~~~~~~~~~-~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 16 SVGNIDDALQCYSEAIK-LDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--P-DWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcccHHHHHHHHHHHHH-HCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHHhhH
Confidence 45556667777888764 34543 3467778888999999999998888754321 1 2345667889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 89 ~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 89 EEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 999999999998 6764
No 32
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=94.88 E-value=0.15 Score=44.46 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=68.2
Q ss_pred HhhccccchHHHHHHHHhhCCCCCC-c-----------chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEH-L-----------TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~-l-----------T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~Y 181 (424)
..+..-.++..+..|+.....++.. . ...+..+..+++..++|+.|+..+.+.+-. + .+....+|
T Consensus 50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~--p~~~~~~~ 126 (198)
T 2fbn_A 50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-D--KNNVKALY 126 (198)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--TTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C--cccHHHHH
Confidence 4455566777788887433222210 1 256778888999999999999988886532 1 23456788
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 182 YGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 182 Y~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..|.++...++|.+|..+|..++. .|..
T Consensus 127 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 127 KLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999998 6765
No 33
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=94.85 E-value=0.14 Score=41.49 Aligned_cols=92 Identities=9% Similarity=0.015 Sum_probs=65.5
Q ss_pred HhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~ 188 (424)
..+..-.++..++.|+..... +.......+..+..++...++|+.|...+.+.+-.. +.+......++..|.++.
T Consensus 21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 100 (164)
T 3ro3_A 21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 100 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 344555666677777654432 222333467778888999999999998888754321 113345677788899999
Q ss_pred hhhcHHHHHHHHHHHhc
Q 014453 189 GQKRFRKALELLHNVVT 205 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~ 205 (424)
..++|.+|..+|..++.
T Consensus 101 ~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 101 LLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999998
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.78 E-value=1.7 Score=38.43 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=69.4
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..+..++. +.|.. ...+..+..++...++|+.|+..+.+-+- .+........++..|.++...++
T Consensus 82 ~~~~~~~~A~~~~~~a~~-~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALA-SDSRN---ARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHH-HCcCc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCC
Confidence 345666777888888874 34432 45677888999999999999998888654 11122355667788999999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|++|..+|..++. .|..
T Consensus 157 ~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhcCccc
Confidence 9999999999998 6654
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.76 E-value=0.14 Score=41.84 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=69.6
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhcccccccccc----CchhhHHHHHHHHHH
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----LPRDFFLYCYYGGMI 186 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~----~~~~~l~Y~YY~G~I 186 (424)
.....++--.|+..+..|+ .++|+. ...|..+-.+++..++|+.|+....+.+---+ .......-++-.|.+
T Consensus 17 ~~~~~~~~~~A~~~y~~Al-~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAI-ELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3344555667788888887 467654 45678888899999999999988887543111 012345567778999
Q ss_pred HHhhhcHHHHHHHHHHHhc-ccC
Q 014453 187 FIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
+...++|.+|.++|..++. .|.
T Consensus 93 ~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 93 FQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHHhhCcC
Confidence 9999999999999999998 554
No 36
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.74 E-value=0.2 Score=39.21 Aligned_cols=90 Identities=9% Similarity=-0.002 Sum_probs=67.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC----chhhHHHHHHHHHHHHh
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIG 189 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~----~~~~l~Y~YY~G~I~~~ 189 (424)
..+..-.++..+..++.. .|.. ...+..+..++...++|+.|...+.+.+-..+. .......++..|.++..
T Consensus 16 ~~~~~~~A~~~~~~a~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 91 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKEL-DPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc-CCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH
Confidence 455666777888888743 4432 356778888899999999999988875432111 11126678888999999
Q ss_pred hhcHHHHHHHHHHHhc-cc
Q 014453 190 QKRFRKALELLHNVVT-AP 207 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~-~P 207 (424)
.++|.+|..+|..++. .|
T Consensus 92 ~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 92 EEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp TTCHHHHHHHHHHHHHHCC
T ss_pred hccHHHHHHHHHHHHHhCC
Confidence 9999999999999999 45
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.58 E-value=0.74 Score=41.30 Aligned_cols=141 Identities=10% Similarity=0.031 Sum_probs=88.2
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC-chhhHHHHHHHHHHHHhhh
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGMIFIGQK 191 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-~~~~l~Y~YY~G~I~~~~~ 191 (424)
...++.-.++..+..++. .+|.. ...+..+..++...++|+.|+..+.+-+- .+. +.....-++..|.++...+
T Consensus 14 ~~~~~~~~A~~~~~~~l~-~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEA-KKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HTTTCHHHHHHHHHHHHH-TTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHH-hCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc
Confidence 345555667777888764 45543 23567778899999999999998888654 221 2233555788899999999
Q ss_pred cHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hccHHHHHHH-HHHhcC
Q 014453 192 RFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELV-NTYNTG 266 (424)
Q Consensus 192 ~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k---~~~~~Y~~L~-~a~~~g 266 (424)
+|.+|..+|..++. .|... +++..+..+.. ..|+..+ .-....+..+ .....|..++ .++..+
T Consensus 89 ~~~~A~~~~~~a~~~~~~~~------~~~~~l~~~~~-~~~~~~~-----A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTTRL------DMYGQIGSYFY-NKGNFPL-----AIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp CHHHHHHHHHHHHHHSTTCT------HHHHHHHHHHH-HTTCHHH-----HHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhcCcccH------HHHHHHHHHHH-HccCHHH-----HHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999998 67653 23333333222 2354431 1111222221 2245677788 777777
Q ss_pred CHHH
Q 014453 267 KIVE 270 (424)
Q Consensus 267 dl~~ 270 (424)
+..+
T Consensus 157 ~~~~ 160 (272)
T 3u4t_A 157 EYVK 160 (272)
T ss_dssp CHHH
T ss_pred HHHH
Confidence 5444
No 38
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.51 E-value=0.5 Score=42.81 Aligned_cols=97 Identities=7% Similarity=-0.041 Sum_probs=70.5
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHH--------ccChHHHHhccccccccccCch----------
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL--------AKCYKAGLSVLEDDIYEINLPR---------- 174 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~--------~~~y~~Al~il~~~i~~~~~~~---------- 174 (424)
...+..-.++..+..++.. .|+.......+..+...... .++|+.|+..+.+-+-..+...
T Consensus 63 ~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~ 141 (261)
T 3qky_A 63 YQNKEYLLAASEYERFIQI-YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR 141 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHH-CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence 3566677788889888754 56554455566677777777 8999999999888654332211
Q ss_pred ----hhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 175 ----DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 175 ----~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
......|..|.++...++|.+|..+|+.++. .|...
T Consensus 142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 1122238889999999999999999999998 77753
No 39
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.44 E-value=0.78 Score=48.78 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=100.2
Q ss_pred HhhccccchHHHHHHHH-------hhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIR-------KIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~-------rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I 186 (424)
..+.+-.++..++.|+. ..+|+. ...+..+.+.++..++|+.|+..+++-+-. + | +....+|+.|.+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~a~~~lg~~ 476 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSES---VELPLMEVRALLDLGDVAKATRKLDDLAER-V-G-WRWRLVWYRAVA 476 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H-C-CCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccc---hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-C-c-chHHHHHHHHHH
Confidence 44555667777887761 233432 356888889999999999999998886532 1 1 245678899999
Q ss_pred HHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh---hccHHHHHHHHH
Q 014453 187 FIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK---NFSQPYMELVNT 262 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k---~~~~~Y~~L~~a 262 (424)
+...++|++|..+|+.|+. .|... +++..+-.+.. ..|+.. ... ...+..+ .....|..++.+
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~------~~~~~lg~~~~-~~g~~~-~~~-----~~~~al~~~P~~~~a~~~lg~~ 543 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGEL------APKLALAATAE-LAGNTD-EHK-----FYQTVWSTNDGVISAAFGLARA 543 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCS------HHHHHHHHHHH-HHTCCC-TTC-----HHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHH-HcCChH-HHH-----HHHHHHHhCCchHHHHHHHHHH
Confidence 9999999999999999999 78764 34433333333 347776 222 1222222 335678888887
Q ss_pred Hh-cCCHHHHHHHHHHcccccccccch
Q 014453 263 YN-TGKIVELETYVQTNREKFESDNNL 288 (424)
Q Consensus 263 ~~-~gdl~~~~~~l~~~~~~f~~Dgn~ 288 (424)
+. .|+ +++.++.++.....+.++
T Consensus 544 ~~~~g~---~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 544 RSAEGD---RVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHTTC---HHHHHHHHHTSCTTSTTH
T ss_pred HHHcCC---HHHHHHHHHhhcccCccc
Confidence 74 355 445555566666555543
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=94.39 E-value=1.6 Score=41.21 Aligned_cols=111 Identities=10% Similarity=-0.061 Sum_probs=76.5
Q ss_pred HHhhccccchHHHHHHHHhhCCC-CCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~-~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~ 188 (424)
...+..-.++..+..|+.. .|. +......+..+...+...++|+.|+..+.+.+-.. ..+......++..|.++.
T Consensus 20 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQV-GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3456666778888888754 443 22234567788889999999999998877753211 113456778888999999
Q ss_pred hhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHH
Q 014453 189 GQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iL 224 (424)
..++|.+|..+|..++. .|..........++-.+-.
T Consensus 99 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 99 VLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999999999998 6654322222344433333
No 41
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.26 E-value=0.42 Score=40.43 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=67.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHH-HHHccCh--HHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQL-CLLAKCY--KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rl-cL~~~~y--~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
..+..-.++..+..|+. ++|+. ...+..+..+ +...++| +.|+..+.+.+-. + | .....++..|.++...
T Consensus 56 ~~~~~~~A~~~~~~al~-~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~-~-p-~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQ-LRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALAL-D-S-NEITALMLLASDAFMQ 128 (177)
T ss_dssp HTTCHHHHHHHHHHHHH-HHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHH-cCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh-C-C-CcHHHHHHHHHHHHHc
Confidence 45666678888888874 45543 3456666677 7788999 9999988875532 1 2 2345677889999999
Q ss_pred hcHHHHHHHHHHHhc-ccCcc
Q 014453 191 KRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++|.+|..+|..++. .|...
T Consensus 129 g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp TCHHHHHHHHHHHHHTCCTTS
T ss_pred ccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999998 77753
No 42
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.26 E-value=0.22 Score=38.15 Aligned_cols=65 Identities=11% Similarity=0.100 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...+...++|+.|+....+.+-.- | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ--P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35566678888999999998888765321 2 2356677889999999999999999999999 7775
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.25 E-value=0.51 Score=40.01 Aligned_cols=84 Identities=7% Similarity=-0.053 Sum_probs=41.3
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~ 194 (424)
.++.-.|+..++.|+ +++|+. ...+..+..++...++++.|+..+.+.+...+ ......+..|.++...++|.
T Consensus 18 ~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 90 (184)
T 3vtx_A 18 KGDFDGAIRAYKKVL-KADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVLDT---TSAEAYYILGSANFMIDEKQ 90 (184)
T ss_dssp HTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHcCCHH
Confidence 344444555566664 344442 34455666666666666666665555322111 12223334444455555555
Q ss_pred HHHHHHHHHhc
Q 014453 195 KALELLHNVVT 205 (424)
Q Consensus 195 ~A~~~~~~a~~ 205 (424)
.|...+..++.
T Consensus 91 ~a~~~~~~a~~ 101 (184)
T 3vtx_A 91 AAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 44
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.09 E-value=0.3 Score=37.66 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=65.5
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++.. .|+. ...+..+..++...++|+.|...+.+.+-. . | .....++..|.++...++|
T Consensus 21 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~-~~~~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALEL-DPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-P-NNAEAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHH-CcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-C-ccHHHHHHHHHHHHHhcCH
Confidence 445556677777777643 4432 346778888999999999999988875432 1 1 1344567789999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 94 ~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 94 DEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhCCCc
Confidence 999999999998 6764
No 45
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.08 E-value=0.29 Score=40.31 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=67.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+. +.|.. ...+..+..++...++|+.|+..+.+.+-.- | .....++..|.++...++|
T Consensus 25 ~~~~~~~A~~~~~~al~-~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 25 KAKDYENAIKFYSQAIE-LNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELD--K-KYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HTTCHHHHHHHHHHHHH-HSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHH-hCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-ccHHHHHHHHHHHHHhccH
Confidence 34555667777888764 45543 4567788888999999999999888755321 1 2345677889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 98 ~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 98 RAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 999999999998 6764
No 46
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.96 E-value=0.14 Score=39.03 Aligned_cols=89 Identities=7% Similarity=-0.165 Sum_probs=61.0
Q ss_pred hccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh-hcHH
Q 014453 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-KRFR 194 (424)
Q Consensus 116 ~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~-~~y~ 194 (424)
+..-.++..+..++. ++|.. ...+..+..++...++|+.|+..+.+.+-..+ .......++..|.++... ++|.
T Consensus 20 ~~~~~A~~~~~~a~~-~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ 94 (112)
T 2kck_A 20 GNYTESIDLFEKAIQ-LDPEE---SKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAAKADALRYIEGKEV 94 (112)
T ss_dssp CCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHHHHHHHTTCSSCSH
T ss_pred hhHHHHHHHHHHHHH-hCcCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHhCCHH
Confidence 334455666666653 34432 34566777888888999999888887543211 111355677888999999 9999
Q ss_pred HHHHHHHHHhc-ccCc
Q 014453 195 KALELLHNVVT-APMS 209 (424)
Q Consensus 195 ~A~~~~~~a~~-~P~~ 209 (424)
+|..+|..++. .|..
T Consensus 95 ~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 95 EAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhhcccCC
Confidence 99999999998 5543
No 47
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=93.96 E-value=0.11 Score=40.49 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...+..+..+++..++|+.|+..+.+.+-. + | +....++..|.++...++|.+|..+|+.++. .|..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET-D-P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 345778888999999999999998886532 1 1 2445778889999999999999999999998 5654
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=93.90 E-value=1.6 Score=41.76 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=76.3
Q ss_pred HHhhccccchHHHHHHHHhhCCC-CCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~-~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~ 188 (424)
...+..-.++..+..|+.. .|. +......+..+...+...++|+.|+..+.+.+-.. ..+......++..|.++.
T Consensus 59 ~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQA-GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 3455666778888888754 443 22233577888889999999999999887754321 113456778889999999
Q ss_pred hhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHH
Q 014453 189 GQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iL 224 (424)
..++|.+|..+|..++. .+..........++..+..
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 99999999999999998 4443222223344444333
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.88 E-value=0.25 Score=42.06 Aligned_cols=89 Identities=11% Similarity=0.142 Sum_probs=65.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+. ++|+. ...+..+..++...++|+.|+..+.+.+- ++ | .....++..|.++..+++|
T Consensus 85 ~~~~~~~a~~~~~~a~~-~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~-~~-p-~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIA-LNTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTIS-IK-P-GFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-hCccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHH-hc-c-hhhhHHHHHHHHHHHCCCH
Confidence 34445556666777763 45543 34577788889999999999998887543 22 2 2455677889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
++|..+|+.|+. .|..
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 999999999998 6653
No 50
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=93.86 E-value=0.24 Score=43.83 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=72.2
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC-c---hhhHHHHHHHHHH
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-P---RDFFLYCYYGGMI 186 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-~---~~~l~Y~YY~G~I 186 (424)
.....+..-.++..+..|+ +++|+ ....+..+..++...++|+.|+..+.+.+-..+. + ......++..|.+
T Consensus 51 ~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAI-KKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHH-HhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHH
Confidence 3345666777888888887 44554 3567888999999999999999998886532221 1 1244778899999
Q ss_pred HHhhhcHHHHHHHHHHHhc-ccC
Q 014453 187 FIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
+...++|.+|..+|..++. .|.
T Consensus 127 ~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 127 FQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHhccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998 665
No 51
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.60 E-value=0.46 Score=43.73 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=61.3
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC------chhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------PRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~------~~~~l~Y~YY~G~I~ 187 (424)
..+..-.++..++.++. ..|+. ...+..+..++...++|+.|+..+.+.+-..+. +......++..|.++
T Consensus 171 ~~~~~~~A~~~~~~al~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 171 LTNNSKLAERFFSQALS-IAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HTTCHHHHHHHHHHHHT-TCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH-hCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 45556667777777763 34432 356777888888888888888877765432110 123445666778888
Q ss_pred HhhhcHHHHHHHHHHHhc-ccCc
Q 014453 188 IGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...++|.+|..+|+.++. .|..
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~~~~ 269 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLIPQN 269 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHhhCccc
Confidence 888888888888888887 5653
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=93.52 E-value=1.8 Score=37.76 Aligned_cols=90 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..++.++. +.|. ....+..+..++...++|+.|+..+.+-+-..+ .....++..|.++...++
T Consensus 68 ~~~~~~~~A~~~~~~~~~-~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 68 SSVNELERALAFYDKALE-LDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM---ENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC---CSHHHHHHHHHHHHHTSC
T ss_pred HHcCCHHHHHHHHHHHHH-cCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcc
Confidence 345666777888888874 3443 246688889999999999999999887543211 123456778999999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|.+|..+|..++. .|..
T Consensus 141 ~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 141 PKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 9999999999998 6654
No 53
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.46 E-value=0.81 Score=39.57 Aligned_cols=94 Identities=11% Similarity=0.064 Sum_probs=71.1
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC-------------chhhHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------PRDFFLY 179 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-------------~~~~l~Y 179 (424)
...+..-.++..+..|+. ++|.. ...+..+..++...++|+.|+..+.+.+-..+. .......
T Consensus 48 ~~~g~~~~A~~~~~~al~-~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSIN-RDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 123 (213)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHH
Confidence 345666778888888874 45542 456888889999999999999888875432211 1134567
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 180 ~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++..|.++...++|.+|..+|..++. .|...
T Consensus 124 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 124 LYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 78999999999999999999999999 77653
No 54
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=93.43 E-value=0.18 Score=46.95 Aligned_cols=94 Identities=5% Similarity=-0.012 Sum_probs=68.9
Q ss_pred HHHhhccccchHHHHHHHHhhCCCC-CCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~~~-~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
....+..-.++..+..++.. .|+. ......+..+..++...++|+.|+..+.+-+-. + | +....++..|.++...
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKT-EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-E-P-DNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-c-ccHHHHHHHHHHHHHc
Confidence 33455666778888888754 4442 222244666788899999999999998886532 1 2 2355777889999999
Q ss_pred hcHHHHHHHHHHHhc-ccCc
Q 014453 191 KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~ 209 (424)
++|.+|..+|+.++. .|..
T Consensus 320 g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTC
T ss_pred CCHHHHHHHHHHHHhcCCCC
Confidence 999999999999998 6765
No 55
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=93.37 E-value=0.17 Score=40.16 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
+..+...++..++|+.|...+.+-+-..+........+|..|.++...++|.+|..+|..++. .|..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 456677888999999999988875432222222336778899999999999999999999998 6765
No 56
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.33 E-value=0.91 Score=43.70 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=97.5
Q ss_pred HhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhccccccccccC----chhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~----~~~~l~Y~YY~G~I~ 187 (424)
..++.-.|+..++.|+..+.. ++......+..+..++...++|+.|+....+.+--.+. +.....-++..|.++
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 456667788888888755432 22334456778888899999999998888875432111 224566777889999
Q ss_pred HhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhh--------hccHHHHH
Q 014453 188 IGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLK--------NFSQPYME 258 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k--------~~~~~Y~~ 258 (424)
...++|.+|..+|..|+. ++..........++..+-.+..- .|+..+ .-....+... .....+..
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-SGDDQM-----AVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHH-----HHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-CCCHHH-----HHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 999999999999999998 44332222222344443333332 255431 1111122111 11334566
Q ss_pred HHHHH-hcCCHHHHHHHHHHccccccc
Q 014453 259 LVNTY-NTGKIVELETYVQTNREKFES 284 (424)
Q Consensus 259 L~~a~-~~gdl~~~~~~l~~~~~~f~~ 284 (424)
++.++ ..|+..+-...+++.-+...+
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 66665 456666544444444444443
No 57
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.33 E-value=1.8 Score=37.91 Aligned_cols=96 Identities=7% Similarity=0.039 Sum_probs=65.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCc---chHHHHHHHHHHHccChHHHHhcccccccccc-------------------
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHL---TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN------------------- 171 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~l---T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~------------------- 171 (424)
..+..-.++..+..++.......... ...+..+..++...++|+.|+..+.+.+-..+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 34555667777777765432221111 45677888888888999888888777543111
Q ss_pred ----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 172 ----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 172 ----~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
........++..|.++...++|.+|..+|..++. .|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 0223556677889999999999999999999998 6764
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.26 E-value=1.3 Score=43.82 Aligned_cols=109 Identities=12% Similarity=0.043 Sum_probs=77.1
Q ss_pred hhcchHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccC-hHHHHhccccccccccC
Q 014453 94 IRYVPEKFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKC-YKAGLSVLEDDIYEINL 172 (424)
Q Consensus 94 ~r~~~~~~~~l~~~~~~~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~-y~~Al~il~~~i~~~~~ 172 (424)
+++.|+...+ ...........+..-.++..+..|+ +++|+. ...|..+-.++...+. |+.|+..+++.+-. +
T Consensus 90 i~~~p~~~~a-~~~lg~~~~~~g~~~~Al~~~~~al-~l~P~~---~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~- 162 (382)
T 2h6f_A 90 IIYSDKFRDV-YDYFRAVLQRDERSERAFKLTRDAI-ELNAAN---YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-Q- 162 (382)
T ss_dssp ECCCHHHHHH-HHHHHHHHHHTCCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-
T ss_pred hhCChhhHHH-HHHHHHHHHHCCChHHHHHHHHHHH-HhCccC---HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-C-
Confidence 4555553333 2223333345566778888888887 566654 3456777777888886 99999999886542 1
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 173 ~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
| .....+++.|.++...++|.+|..+|..|+. .|...
T Consensus 163 P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 163 P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 2 2456678889999999999999999999999 78763
No 59
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=93.18 E-value=2.1 Score=42.23 Aligned_cols=90 Identities=9% Similarity=0.022 Sum_probs=68.8
Q ss_pred Hhhc-cccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 114 LLEA-PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 114 ~~~~-~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
..+. .-.++..+..|+ .++|.. ...|..+-.++...++|+.|+..+++.+- ++ | ....-+++.|.++...++
T Consensus 143 ~~g~d~~eAl~~~~~al-~l~P~~---~~a~~~~g~~~~~~g~~~eAl~~~~kal~-ld-P-~~~~a~~~lg~~~~~~g~ 215 (382)
T 2h6f_A 143 SLQKDLHEEMNYITAII-EEQPKN---YQVWHHRRVLVEWLRDPSQELEFIADILN-QD-A-KNYHAWQHRQWVIQEFKL 215 (382)
T ss_dssp HTTCCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHTC
T ss_pred HcccCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-c-cCHHHHHHHHHHHHHcCC
Confidence 4454 566788888887 466654 34577777788888999999999988653 22 2 244556788999999999
Q ss_pred HHHHHHHHHHHhc-ccCcc
Q 014453 193 FRKALELLHNVVT-APMSS 210 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~~ 210 (424)
|.+|..+|..++. .|...
T Consensus 216 ~~eAl~~~~~al~l~P~~~ 234 (382)
T 2h6f_A 216 WDNELQYVDQLLKEDVRNN 234 (382)
T ss_dssp CTTHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHhCCCCH
Confidence 9999999999999 78753
No 60
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.17 E-value=0.43 Score=42.92 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=69.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..++. ..+++......+..+..++...++|+.|+..+.+.+-. + | .....++..|.++...++|
T Consensus 49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~-~-~-~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR-D-T-TRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-T-TCTHHHHHHHHHHHHTTCH
T ss_pred HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-C-c-ccHHHHHHHHHHHHHccCH
Confidence 45666678888888876 44445555566888899999999999999888875432 1 1 1334667889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 125 ~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHHGGGCCSSCCC
T ss_pred HHHHHHHHHHhhcCCCc
Confidence 999999999998 5554
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=93.14 E-value=1.5 Score=42.13 Aligned_cols=93 Identities=12% Similarity=-0.051 Sum_probs=70.6
Q ss_pred HHhhccccchHHHHHHHHhhCCCCC---CcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMI 186 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~---~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I 186 (424)
...++...++..+..|+.-+...+. .....+..+-.++...++|+.|+..+.+.+--. +.+......++..|.+
T Consensus 152 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 231 (378)
T 3q15_A 152 YHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANS 231 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566777888888888866544332 234567778888999999999999888754311 1233556677889999
Q ss_pred HHhhhcHHHHHHHHHHHhc
Q 014453 187 FIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~ 205 (424)
+...++|.+|..+|..|+.
T Consensus 232 y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 232 YDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998
No 62
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.35 Score=42.74 Aligned_cols=86 Identities=13% Similarity=0.009 Sum_probs=56.4
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. +.|+. ...+..+..++...++|+.|+..+.+.+-.- .+....++..|.++...++|
T Consensus 151 ~~~~~~~A~~~~~~a~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIK-RAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHh-cCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhH
Confidence 44555566677777764 34432 3456677777777888888877777654311 12345566777888888888
Q ss_pred HHHHHHHHHHhc-c
Q 014453 194 RKALELLHNVVT-A 206 (424)
Q Consensus 194 ~~A~~~~~~a~~-~ 206 (424)
.+|..+|..++. .
T Consensus 224 ~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 224 ASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 888888888887 5
No 63
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.08 E-value=0.72 Score=39.66 Aligned_cols=89 Identities=7% Similarity=-0.100 Sum_probs=60.3
Q ss_pred Hh-hccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 114 LL-EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 114 ~~-~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
.. +..-.++..+..++. .|........+..+..++...++++.|+..+.+.+-.. | .....++..|.++...++
T Consensus 88 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALA--DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--P-QFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp TTTCCHHHHHHHHHHHHT--STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHc--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-CCchHHHHHHHHHHHcCC
Confidence 45 555667777777764 33333334567777788888888888888777654311 1 134456677888888888
Q ss_pred HHHHHHHHHHHhc-cc
Q 014453 193 FRKALELLHNVVT-AP 207 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P 207 (424)
|.+|..+|..++. .|
T Consensus 163 ~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE 178 (225)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888887 56
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.07 E-value=0.38 Score=44.95 Aligned_cols=89 Identities=9% Similarity=-0.023 Sum_probs=69.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..|+. ++|+. ...+..+..++...++|+.|+..+.+.+-- + | +....+|..|.++...++|
T Consensus 16 ~~g~~~~A~~~~~~al~-~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAIT-RNPLV---AVYYTNRALCYLKMQQPEQALADCRRALEL-D-G-QSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HTTCHHHHHHHHHHHHH-HCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-C-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-hCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHcCCH
Confidence 45555667888888874 45543 456788888999999999999988886532 2 2 3456778889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 89 ~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccc
Confidence 999999999998 6753
No 65
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=93.03 E-value=0.63 Score=41.02 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 180 ~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
+|..|+.+...++|.+|..+|+.|+. .|..
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 45678888889999999999999998 7764
No 66
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.01 E-value=0.7 Score=41.02 Aligned_cols=90 Identities=11% Similarity=0.011 Sum_probs=67.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh---
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ--- 190 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~--- 190 (424)
..+..-.++..++.|+ +++|+. ...+..+..++...++|+.|+..+.+-+- .+ | +....++..|.++...
T Consensus 17 ~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-P-~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 17 ALGRYDAALTLFERAL-KENPQD---PEALYWLARTQLKLGLVNPALENGKTLVA-RT-P-RYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HTTCHHHHHHHHHHHH-TTSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CcHHHHHHHHHHHHHhhhh
Confidence 4556666777888886 445543 45678888899999999999988887543 11 2 2345566778899999
Q ss_pred --------hcHHHHHHHHHHHhc-ccCcc
Q 014453 191 --------KRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 191 --------~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++|.+|...|..++. .|...
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 90 AEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 999999999999998 77653
No 67
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=92.93 E-value=0.44 Score=45.84 Aligned_cols=96 Identities=8% Similarity=-0.022 Sum_probs=72.9
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCC------------CcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHH
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTE------------HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL 178 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~------------~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~ 178 (424)
.....++.-.|+..++.|+. +.|+.. .....+..+..+++..++|+.|+...++.+-- + | +...
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~ 231 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVS-WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-D-S-NNEK 231 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH-HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CcHH
Confidence 33455666778888888874 455431 01357888889999999999999998886532 2 1 2456
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 179 YCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 179 Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.+|..|.++..+++|.+|..+|..|+. .|...
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 778899999999999999999999999 78753
No 68
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.93 E-value=0.32 Score=43.29 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=69.4
Q ss_pred hccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHH
Q 014453 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRK 195 (424)
Q Consensus 116 ~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~ 195 (424)
+..-.++..++.|+ +++|+. ...+..+-.++...++|+.|+..+.+-+-- . +....++..|.++...++|.+
T Consensus 98 g~~~~A~~~~~~al-~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 98 GYLEQALSVLKDAE-RVNPRY---APLHLQRGLVYALLGERDKAEASLKQALAL---E-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C-CCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc---c-cchHHHHHHHHHHHHcCCHHH
Confidence 55566788888887 456653 456888889999999999999988886431 1 355677889999999999999
Q ss_pred HHHHHHHHhc-ccCcc
Q 014453 196 ALELLHNVVT-APMSS 210 (424)
Q Consensus 196 A~~~~~~a~~-~P~~~ 210 (424)
|..+|+.++. .|...
T Consensus 170 A~~~~~~al~~~P~~~ 185 (217)
T 2pl2_A 170 ALAQYAKALEQAPKDL 185 (217)
T ss_dssp HHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 9999999998 77653
No 69
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.92 E-value=0.19 Score=38.16 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=49.7
Q ss_pred HHHHHHHHccChHHHHhccccccccccCchhhHH-HHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 145 EFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFL-YCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 145 ~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~-Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.....++..++|+.|+..+.+-+-.- |. ... .++..|.++...++|.+|..+|..++. .|...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE--PV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC--SS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 45567788999999999888754321 22 334 777889999999999999999999999 77754
No 70
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.91 E-value=1 Score=42.34 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=90.7
Q ss_pred HhhccccchHHHHHHHHhhCCCCC--CcchHHHHHHHHHHHccChHHHHhcccccccccc---CchhhHHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~--~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~~~~~l~Y~YY~G~I~~ 188 (424)
..+..-.++..++.|+.-....+. .....+..+-.++.. ++|+.|+....+.+--.+ .+......++-.|.++.
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 456778899999999865533222 122345556666666 999999988887542111 12234566777899999
Q ss_pred hhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhh-----h--hccHHHHHHH
Q 014453 189 GQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNL-----K--NFSQPYMELV 260 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~-----k--~~~~~Y~~L~ 260 (424)
.+++|.+|..+|+.++. .|..........++-...++.+- .|+... .-....+.. . ........++
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~-----A~~~~~~al~~p~~~~~~e~~~l~~l~ 240 (307)
T 2ifu_A 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH-RADYVA-----AQKCVRESYSIPGFSGSEDCAALEDLL 240 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHH-----HHHHHHHHTTSTTSTTSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH-cCCHHH-----HHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 99999999999999998 56543222122344343443332 254330 001111111 0 0112345677
Q ss_pred HHHhcCCHHHHHH
Q 014453 261 NTYNTGKIVELET 273 (424)
Q Consensus 261 ~a~~~gdl~~~~~ 273 (424)
.++..||...|..
T Consensus 241 ~~~~~~d~~~~~~ 253 (307)
T 2ifu_A 241 QAYDEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhcCHHHHHH
Confidence 7888888877777
No 71
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.90 E-value=0.19 Score=37.13 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..+..+...+...++|+.|+..+.+.+-.- | +....++..|.++...++|.+|..+|..++. .|..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 456677788899999999999888765321 1 2345677889999999999999999999998 6765
No 72
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.85 E-value=0.18 Score=44.61 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++..+..++...++|+.|+..+.+-+-. + | +....++..|.++...++|.+|..+|+.++. .|...
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK-A-P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-C-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 3444888889999999999998886532 1 2 2456777889999999999999999999999 78753
No 73
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.82 E-value=0.43 Score=40.61 Aligned_cols=66 Identities=8% Similarity=-0.130 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.+..+-..+...+.|+.|+..+.+-+-- + | ....+++..|.++...++|.+|..+|..|+. .|...
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~-~-P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY-D-F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 4556677888999999999998886532 2 1 3566788889999999999999999999999 78764
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.80 E-value=1.6 Score=41.89 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=67.3
Q ss_pred HHhhccccchHHHHHHHHhhCCCCC---CcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTE---HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMI 186 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~---~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I 186 (424)
...++.-.++..+..|+.-+...+. .....+..+-.++...++|+.|+..+.+.+-.. +.+......++..|.+
T Consensus 154 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 233 (383)
T 3ulq_A 154 YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLC 233 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3566677788888888765544322 223456677788888899999988887754321 1133455677788999
Q ss_pred HHhhhcHHHHHHHHHHHhc
Q 014453 187 FIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~ 205 (424)
+...++|.+|..+|..|+.
T Consensus 234 y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 234 KNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998
No 75
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=92.68 E-value=1.3 Score=37.88 Aligned_cols=91 Identities=10% Similarity=0.082 Sum_probs=67.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHc-cChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLA-KCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~-~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
..+..-.++..+..++. +.|.. ...+..+..++... ++|+.|+..+.+-+- .+........++..|.++...++
T Consensus 54 ~~~~~~~A~~~~~~a~~-~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 54 YLKVNDKAQESFRQALS-IKPDS---AEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHHHH-hCCCC---hHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCC
Confidence 45556667778888864 44442 34677888889999 999999998887654 21122345667788999999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|.+|..+|..++. .|..
T Consensus 129 ~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 9999999999998 6654
No 76
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.66 E-value=0.33 Score=47.74 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=68.1
Q ss_pred HhhccccchHHHHHHHHhhCC------------CCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQS------------STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCY 181 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~------------~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~Y 181 (424)
..++.-.|+..++.|+..+.. ........+..+..+++..++|+.|+...++.+- .+ .+....+|
T Consensus 235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~--p~~~~a~~ 311 (370)
T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-ID--PSNTKALY 311 (370)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC--TTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hC--chhHHHHH
Confidence 444555677777777652111 1112345677888899999999999998888653 22 23566778
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 182 YGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 182 Y~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..|.++..+++|++|..+|..|+. .|..
T Consensus 312 ~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 312 RRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999998 7765
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.65 E-value=0.64 Score=41.41 Aligned_cols=96 Identities=8% Similarity=-0.001 Sum_probs=66.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHh----
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---- 189 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~---- 189 (424)
..++.-.++..+..++.. .|.+......+..+...+...++|+.|+...++-+-..|.....-.-+|+.|.++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 445556677778887754 565444445677888899999999999988888653222211222235677888775
Q ss_pred --------------hhcHHHHHHHHHHHhc-ccCcc
Q 014453 190 --------------QKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 190 --------------~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.+++.+|...|..++. .|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 4799999999999998 77754
No 78
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.63 E-value=0.49 Score=44.51 Aligned_cols=110 Identities=13% Similarity=0.105 Sum_probs=71.1
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+.+-.++..++.++. ++|+. ..+.+....+.+....+.|+.|..++++-+-.. | +....++-.|.++...++
T Consensus 141 ~~~g~~~~A~~~l~~~~~-~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p-~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQD-QDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--S-PTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHTTCHHHHHHHHHHHHH-HCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--C-CCHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHh-hCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHcCC
Confidence 345666667777888764 45553 222222333444455578999988887754322 2 245566778999999999
Q ss_pred HHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCC
Q 014453 193 FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~ 234 (424)
|.+|...|+.++. .|... +++-.++.+... .|+..
T Consensus 216 ~~eA~~~l~~al~~~p~~~------~~l~~l~~~~~~-~g~~~ 251 (291)
T 3mkr_A 216 WEAAEGVLQEALDKDSGHP------ETLINLVVLSQH-LGKPP 251 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHH-TTCCH
T ss_pred HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHH-cCCCH
Confidence 9999999999998 77653 455555554444 47654
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.63 E-value=1.6 Score=44.01 Aligned_cols=88 Identities=5% Similarity=-0.040 Sum_probs=70.4
Q ss_pred Hhhcc-ccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh--
Q 014453 114 LLEAP-IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-- 190 (424)
Q Consensus 114 ~~~~~-~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~-- 190 (424)
..+.. -.++..++.|+ +++|+. ...+..+..++...++|+.|+..+.+.+- .+ |. ...++..|.++...
T Consensus 114 ~~g~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~--~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 114 VTPDYSPEAEVLLSKAV-KLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALT-HC-KN--KVSLQNLSMVLRQLQT 185 (474)
T ss_dssp SSSSCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TC-CC--HHHHHHHHHHHTTCCC
T ss_pred hccccHHHHHHHHHHHH-hhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CC--HHHHHHHHHHHHHhcc
Confidence 45556 67888888887 456653 45788899999999999999999888653 22 33 37788899999999
Q ss_pred -------hcHHHHHHHHHHHhc-ccCc
Q 014453 191 -------KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 -------~~y~~A~~~~~~a~~-~P~~ 209 (424)
++|.+|..+|..++. .|..
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~p~~ 212 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMDVLD 212 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CChhhhhhhHHHHHHHHHHHHHhCCCC
Confidence 999999999999998 7775
No 80
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.56 E-value=0.41 Score=41.72 Aligned_cols=107 Identities=12% Similarity=0.049 Sum_probs=72.3
Q ss_pred HhhccccchHHHHHHHHhhCCCCC-----Cc----chHHHHHHHHHHHccChHHHHhccccccccc------cCchhhHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTE-----HL----TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI------NLPRDFFL 178 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~-----~l----T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~------~~~~~~l~ 178 (424)
..+..-.++...+.|+ +++|+.. .. ...|...-......+.|+.|+...++.+--+ + | +...
T Consensus 23 ~~g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-p-d~~~ 99 (159)
T 2hr2_A 23 VAGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-Q-DEGK 99 (159)
T ss_dssp HHTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-S-THHH
T ss_pred HCCCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-C-chHH
Confidence 3444555777788886 5666510 11 1267777777888899999988888765321 2 2 3445
Q ss_pred HH----HHHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHH
Q 014453 179 YC----YYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (424)
Q Consensus 179 Y~----YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~i 223 (424)
-+ |-.|.++..+++|++|..+|..|+. .|...+-.-.++..|+.+
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 55 8999999999999999999999999 787532211234555544
No 81
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=92.50 E-value=0.47 Score=47.84 Aligned_cols=95 Identities=11% Similarity=-0.003 Sum_probs=69.9
Q ss_pred HHHhhccccchHHHHHHHHhhCCCCC------------CcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHH
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQSSTE------------HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLY 179 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~~~~------------~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y 179 (424)
....+..-.|+..+..|+.. .|... .....+..+..+++..++|+.|+...++.+-- + .+....
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~--p~~~~a 353 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSW-LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-D--SANEKG 353 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--TTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C--CccHHH
Confidence 33456667788888888754 44432 11367888888999999999999988886532 2 124667
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 180 CYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 180 ~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
+|..|.++..+++|.+|..+|..|+. .|...
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 88999999999999999999999999 77654
No 82
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.50 E-value=0.5 Score=37.52 Aligned_cols=65 Identities=8% Similarity=-0.052 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+...-..++..++|+.|+..+.+.+-.- | +....++..|.++...++|.+|..+|..++. .|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 35566678899999999999988865321 1 2456778889999999999999999999999 7765
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.47 E-value=0.68 Score=35.81 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=57.6
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. ..|.. ...+..+..++...++|+.|...+.+-+-.. |. ....++..|.++...++|
T Consensus 47 ~~~~~~~A~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-~~~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 47 KQGDYDEAIEYYQKALE-LDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-SAEAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-CHHHHHHHHHHHHTTTCH
T ss_pred HhcCHHHHHHHHHHHHH-HCCCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHHccH
Confidence 34455556666777653 33432 3456677778888888888888877644311 11 234455678888888899
Q ss_pred HHHHHHHHHHhc-cc
Q 014453 194 RKALELLHNVVT-AP 207 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P 207 (424)
.+|..+|..++. .|
T Consensus 120 ~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 120 DEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCC
Confidence 999998888887 44
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=92.41 E-value=1.4 Score=36.18 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=65.2
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++.. .|+. ...+..+..++...++++.|...+.+.+-.. | .....++..|.++...++|
T Consensus 54 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-APDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--P-INFNVRFRLGVALDNLGRF 126 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--c-HhHHHHHHHHHHHHHcCcH
Confidence 455666677778887643 4432 3457778888899999999998888754321 1 2345667889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 127 ~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 127 DEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 999999999998 5654
No 85
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.41 E-value=0.55 Score=38.51 Aligned_cols=66 Identities=8% Similarity=-0.163 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.+..+...++..++|+.|+..+.+-+-. + | ....+++..|.++...++|.+|..+|..++. .|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-D-H-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-C-C-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 4556777888999999999988875432 1 1 3456778889999999999999999999999 77653
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=92.34 E-value=0.65 Score=40.92 Aligned_cols=90 Identities=9% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..|+. ++|.+. ...+..+..++...++|+.|+..+.+.+-. + | .....++..|.++...++|
T Consensus 19 ~~~~~~~A~~~~~~al~-~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-p-~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLK-LTNNQD--SVTAYNCGVCADNIKKYKEAADYFDIAIKK-N-Y-NLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HTTCHHHHHHHHHHHHH-HTTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T-C-SHHHHHHHHHHHHHHTTCH
T ss_pred HccCHHHHHHHHHHHHh-ccCCCC--cHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-C-c-chHHHHHHHHHHHHHcccH
Confidence 45556667788888874 444111 245666888899999999999998886532 1 1 2566778899999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 93 ~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 93 QEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 999999999998 7765
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.29 E-value=0.5 Score=38.39 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
-.|...=..++..|+|+.|+...++.+-. + | .....++..|.++..+++|.+|..+|..|+. .|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR-D-P-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 34666667889999999999998886532 2 2 2456778889999999999999999999998 6765
No 88
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.26 E-value=0.48 Score=39.70 Aligned_cols=66 Identities=11% Similarity=0.024 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..+..+...++..++|+.|+..+.+.+-.-+ ....+++..|.++...++|.+|..+|..++. .|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 4567778889999999999999888653211 2466788889999999999999999999998 6764
No 89
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=92.23 E-value=0.33 Score=44.26 Aligned_cols=96 Identities=9% Similarity=-0.025 Sum_probs=67.4
Q ss_pred HHhhccccchHHHHHHHHhhC----CCCCCcchHHHHHHHHHHHccChHHHHhcccccccccc-----------------
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN----------------- 171 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~----~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~----------------- 171 (424)
...++.-.++..+..++.... ++.......+..+.+++...++|+.|...+.+.+-..+
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 345556667777877775432 12233445677888999999999999888776542100
Q ss_pred -----------------------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 172 -----------------------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 172 -----------------------------~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
........++..|.++...++|.+|..+|..++. .|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0234566778889999999999999999999997 443
No 90
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=92.20 E-value=0.59 Score=39.07 Aligned_cols=68 Identities=6% Similarity=-0.144 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
...+..+...++..++|+.|+..+.+-+-. + | ....+++..|.++...++|.+|..+|..++. .|...
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL-D-H-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C-c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345667788889999999999988875432 1 1 2456677889999999999999999999998 67753
No 91
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.12 E-value=2.7 Score=45.29 Aligned_cols=91 Identities=12% Similarity=0.044 Sum_probs=68.3
Q ss_pred HHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhh
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK 191 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~ 191 (424)
..+.++.-.|+..++.|+ .++|+. ...|..+-.++...++|+.|+..+.+.+- ++ -+....++..|.++..++
T Consensus 19 ~~~~G~~~eAi~~~~kAl-~l~P~~---~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~--P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 19 KREQGNIEEAVRLYRKAL-EVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIR-IS--PTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHTTCHHHHHHHHHHHH-HHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHcC
Confidence 335566667788888887 456653 45688888888899999999888887543 21 134566778899999999
Q ss_pred cHHHHHHHHHHHhc-ccCc
Q 014453 192 RFRKALELLHNVVT-APMS 209 (424)
Q Consensus 192 ~y~~A~~~~~~a~~-~P~~ 209 (424)
+|++|..+|+.|+. .|..
T Consensus 92 ~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 92 DVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 99999999999998 7765
No 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=92.09 E-value=1.1 Score=39.71 Aligned_cols=91 Identities=7% Similarity=-0.054 Sum_probs=66.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. .+........+..+..++...++++.|...+.+.+-.. | .....++..|.++...++|
T Consensus 117 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ--DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--R-NQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HTTCHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-CCHHHHHHHHHHHHHTTCH
T ss_pred HHhHHHHHHHHHHHHHh--CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--c-ccHHHHHHHHHHHHHcCCH
Confidence 45556667777777764 22223345567788889999999999999988754321 1 2345667889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 192 ~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHhCcCc
Confidence 999999999998 6643
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.07 E-value=1.2 Score=41.90 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=52.1
Q ss_pred ccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHH
Q 014453 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA 196 (424)
Q Consensus 117 ~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A 196 (424)
..-.++..+..++. ++|+.. ....+..+..++...++|+.|+..+.+-+-.- | +....++..|.++...++|.+|
T Consensus 196 ~~~~A~~~~~~a~~-~~p~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~-~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVR-LDPTSI-DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--P-NDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHH-HSTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHH-hCcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-CCHHHHHHHHHHHHHcCCHHHH
Confidence 33445556666653 344421 23456667777777777777777776643211 1 1234555667777777777777
Q ss_pred HHHHHHHhc-ccC
Q 014453 197 LELLHNVVT-APM 208 (424)
Q Consensus 197 ~~~~~~a~~-~P~ 208 (424)
..+|..++. .|.
T Consensus 271 ~~~~~~al~~~~~ 283 (368)
T 1fch_A 271 VAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 777777776 554
No 94
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=92.06 E-value=3.1 Score=39.57 Aligned_cols=64 Identities=9% Similarity=0.055 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
.+..+..+++..++++.|..+..+.+-. + ......++..|.++...++|.+|..+|..++. .|.
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQ-N--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 3445555666666666665555443321 1 11334455556666666666666666666665 444
No 95
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.06 E-value=0.44 Score=38.38 Aligned_cols=93 Identities=6% Similarity=-0.045 Sum_probs=67.8
Q ss_pred HHhhccccchHHHHHHHHhhCCC--CCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF 187 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~--~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~ 187 (424)
...+..-.++..+..|+...... +......+..+..++...++|+.|...+.+.+-.. ..+......++..|.++
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence 35566667777788877554322 22234567778888899999999999888754321 11334566778889999
Q ss_pred HhhhcHHHHHHHHHHHhc
Q 014453 188 IGQKRFRKALELLHNVVT 205 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~ 205 (424)
...++|.+|..+|..++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 999999999999999987
No 96
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.99 E-value=6 Score=35.56 Aligned_cols=92 Identities=10% Similarity=0.035 Sum_probs=66.0
Q ss_pred hhccccchHHHHHHHHhhC----CCCCCcchHHHHHHHHHHHccChHHHHhccccccccc-----cCchhhHHHHHHHHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQ----SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYYGGM 185 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~----~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~-----~~~~~~l~Y~YY~G~ 185 (424)
.+..-.++..++.++.... ++.......+..+..++...++|+.|+..+.+.+-.. +.+......++..|.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4444455666666654321 1233345667888899999999999999888765321 113456778888999
Q ss_pred HHHhhhcHHHHHHHHHHHhcc
Q 014453 186 IFIGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 186 I~~~~~~y~~A~~~~~~a~~~ 206 (424)
++...++|.+|..+|..++..
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHH
Confidence 999999999999999999984
No 97
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.99 E-value=0.62 Score=38.51 Aligned_cols=90 Identities=7% Similarity=-0.089 Sum_probs=67.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.++..+..++.. .|.. ...+..+...+...++|+.|...+.+-+-.. | .....++..|.++...++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA-NPIN---FNVRFRLGVALDNLGRFDEAIDSFKIALGLR--P-NEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhc-CcHh---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--c-cchHHHHHHHHHHHHcCCH
Confidence 455666677778887644 4432 4567888899999999999999988754321 1 2345667889999999999
Q ss_pred HHHHHHHHHHhc-ccCcc
Q 014453 194 RKALELLHNVVT-APMSS 210 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~~ 210 (424)
.+|..+|..++. .|...
T Consensus 161 ~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 161 EEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 999999999998 66653
No 98
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.90 E-value=0.28 Score=39.60 Aligned_cols=65 Identities=12% Similarity=-0.081 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...++..++|+.|+..+.+-+-. + | +....+|..|.++...++|.+|..+|+.++. .|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK-E-P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4567778899999999999998886542 1 2 2456778899999999999999999999999 7875
No 99
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.90 E-value=0.8 Score=36.67 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...+..+...+...++|+.|...+.+-+-..+.+......++..|.++...++|.+|..+|..++. .|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 356777888899999999999998886542222223467788899999999999999999999998 5654
No 100
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.87 E-value=0.8 Score=40.96 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=70.6
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
.....+..-.++..+..|+. ++|.. ...+..+..++...++|+.|+..+.+-+-.. | .....++..|.++...
T Consensus 52 ~~~~~~~~~~A~~~~~~al~-~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 52 LYDSLGLRALARNDFSQALA-IRPDM---PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--P-TYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCTHHHHHHHHHHHHT
T ss_pred HHHHcccHHHHHHHHHHHHH-cCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--c-cccHHHHHHHHHHHHh
Confidence 33456666778888888874 45542 4567888899999999999999988865321 1 2345677889999999
Q ss_pred hcHHHHHHHHHHHhc-ccCcc
Q 014453 191 KRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++|.+|..+|..++. .|...
T Consensus 125 g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCCh
Confidence 999999999999998 67653
No 101
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.87 E-value=1.3 Score=41.89 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=63.8
Q ss_pred ccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHH
Q 014453 117 APIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA 196 (424)
Q Consensus 117 ~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A 196 (424)
..-.++..++.++. +.|+. .....+..+..++...++|+.|+..+.+.+-.- | +....++..|.++...++|.+|
T Consensus 192 ~~~~A~~~~~~al~-~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 192 VLEGVKELYLEAAH-QNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--P-EDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp HHHHHHHHHHHHHH-HSCSS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHH-hCcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHH
Confidence 34455667777764 45542 124567788889999999999998888754321 2 2344667789999999999999
Q ss_pred HHHHHHHhc-ccCc
Q 014453 197 LELLHNVVT-APMS 209 (424)
Q Consensus 197 ~~~~~~a~~-~P~~ 209 (424)
..+|+.++. .|..
T Consensus 267 ~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 267 VEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCc
Confidence 999999998 6765
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.80 E-value=0.87 Score=35.57 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=55.4
Q ss_pred CCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 137 EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 137 ~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
......+..+...+...++|+.|...+.+-+-.. | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--P-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 3344567788888999999999999988865321 1 2356778889999999999999999999998 6654
No 103
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=91.74 E-value=0.7 Score=42.58 Aligned_cols=89 Identities=13% Similarity=0.064 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHH
Q 014453 256 YMELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVL 335 (424)
Q Consensus 256 Y~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~ 335 (424)
=..|.+...+|+..+|=+.++.. .+....|..+...+++.-...++++|.+|+++++++.||..++++++..+.
T Consensus 102 i~~L~~~L~~~~y~~fW~~l~~~------~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 102 ILYLGDLLETCHFQAFWQALDEN------MDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT------CHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHhcC------hhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 34677777788877655544322 112223334567778888899999999999999999997545888888777
Q ss_pred HhHHcCceEEEEecCCCEEEEe
Q 014453 336 QMIQDGEIFATINQKDGMVRFL 357 (424)
Q Consensus 336 ~mI~~G~I~A~Id~~~g~v~F~ 357 (424)
+- |- ++| ++|.|.|.
T Consensus 176 ~~---GW---~vd-~~g~I~~~ 190 (226)
T 1rz4_A 176 KY---GW---SAD-ESGQIFIC 190 (226)
T ss_dssp HH---TC---EEC-C--CEECC
T ss_pred HC---CC---EEC-CCccEEeC
Confidence 62 54 344 35666553
No 104
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.74 E-value=1.6 Score=37.06 Aligned_cols=93 Identities=8% Similarity=-0.044 Sum_probs=67.2
Q ss_pred HhhccccchHHHHHHHHhhCCC--CCCcchHHHHHHHHHHHccChHHHHhcccccccc---cc-CchhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---IN-LPRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~--~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~---~~-~~~~~l~Y~YY~G~I~ 187 (424)
..+..-.++..+..|+...... +......+..+..++...++|+.|+..+.+.+-. .+ .+......++..|.++
T Consensus 38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA 117 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 4555566777777777654432 2233456777788889999999999888875432 11 1234566778889999
Q ss_pred HhhhcHHHHHHHHHHHhcc
Q 014453 188 IGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~~ 206 (424)
...++|.+|..+|..++..
T Consensus 118 ~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 9999999999999999973
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=91.67 E-value=0.37 Score=40.37 Aligned_cols=91 Identities=11% Similarity=-0.006 Sum_probs=69.1
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
.+.+..-.|+..+..|+ +++|+. ...|..+-.++...++|+.|+....+.+- ++ | +....++..|.++...++
T Consensus 42 ~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p-~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYI-NVQERD---PKAHRFLGLLYELEENTDKAVECYRRSVE-LN-P-TQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHCS
T ss_pred HHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHcCC
Confidence 34566677888899987 567654 46788999999999999999998888653 22 2 234556778999999999
Q ss_pred HHHHHHH-HHHHhc-ccCcc
Q 014453 193 FRKALEL-LHNVVT-APMSS 210 (424)
Q Consensus 193 y~~A~~~-~~~a~~-~P~~~ 210 (424)
|.+|... ++.|+. .|...
T Consensus 115 ~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 115 TDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp SSSHHHHHHHHHHHHSTTCH
T ss_pred hHHHHHHHHHHHHHhCcCCH
Confidence 9877655 689998 88763
No 106
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=91.65 E-value=0.7 Score=36.81 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=54.4
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...+..+...++..++|+.|+..+.+.+-.-+ .....++..|.++...++|.+|..+|..++. .|..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 34677888899999999999998888653211 2456778889999999999999999999998 6764
No 107
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.61 E-value=0.85 Score=34.60 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...+...++|+.|...+.+.+-.. | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--P-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--C-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 45667788899999999999888865321 1 2356778889999999999999999999998 5653
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.59 E-value=0.47 Score=44.10 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=65.7
Q ss_pred HhhccccchHHHHHHHHhh--CCCCCCcc-hHHHHHHHHHHHccChHHHHhcccccccccc---CchhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKI--QSSTEHLT-TLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl--~~~~~~lT-~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~~~~~l~Y~YY~G~I~ 187 (424)
..++.-.|+..+..|+... .++...+. ..+..+..++...++|+.|+..+.+.+--.. ........++..|.++
T Consensus 167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y 246 (293)
T 2qfc_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 4566667788888887332 22222222 5677788889999999999998887543111 1123466788899999
Q ss_pred HhhhcHHHH-HHHHHHHhccc
Q 014453 188 IGQKRFRKA-LELLHNVVTAP 207 (424)
Q Consensus 188 ~~~~~y~~A-~~~~~~a~~~P 207 (424)
...++|.+| ..+|..|+..-
T Consensus 247 ~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 247 RKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 999999999 88899998743
No 109
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.54 E-value=0.55 Score=40.59 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=43.7
Q ss_pred ChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 155 CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 155 ~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
++..|..++..-+- .+.|.+.-.+.||.|..++..++|.+|.+++..+++ -|.+
T Consensus 50 ~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 50 DIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 56688888877433 222446778999999999999999999999999999 7865
No 110
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=91.39 E-value=0.94 Score=42.85 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=69.3
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..++.++. ++|+. ...+..+..++...++|+.|+..+.+.+-. + | +....++..|.++...++|
T Consensus 225 ~~g~~~~A~~~~~~al~-~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALT-VRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEI-Q-P-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-C-CchHHHHHHHHHHHHCCCH
Confidence 45566677888888874 45543 457888999999999999999998885432 1 2 2356677889999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 298 ~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 999999999998 7764
No 111
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.30 E-value=0.99 Score=34.83 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=62.5
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~ 194 (424)
.+..-.++..+..++. ..|.. ...+..+..++...++++.|...+.+-+-.. | .....++..|.++...++|.
T Consensus 14 ~~~~~~A~~~~~~~~~-~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~ 86 (136)
T 2fo7_A 14 QGDYDEAIEYYQKALE-LDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-RSAEAWYNLGNAYYKQGDYD 86 (136)
T ss_dssp HTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHTTTCHH
T ss_pred cCcHHHHHHHHHHHHH-cCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHHhcCHH
Confidence 4445566667777764 34432 3456677888899999999998888754321 1 13345667799999999999
Q ss_pred HHHHHHHHHhc-ccCc
Q 014453 195 KALELLHNVVT-APMS 209 (424)
Q Consensus 195 ~A~~~~~~a~~-~P~~ 209 (424)
+|..+|..++. .|..
T Consensus 87 ~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 87 EAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 99999999998 5543
No 112
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.25 E-value=0.69 Score=39.42 Aligned_cols=97 Identities=8% Similarity=-0.155 Sum_probs=70.2
Q ss_pred HHHhhccccchHHHHHHHHhhCCCC---CCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHH
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQSST---EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM 185 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~~~---~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~ 185 (424)
....+..-.++..+..|+......+ ......+..+..++...++|+.|...+.+.+-.. ..+......++..|.
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 3356666777888888876543322 1345567788888999999999999888754311 112344555678899
Q ss_pred HHHhhhcHHHHHHHHHHHhcccC
Q 014453 186 IFIGQKRFRKALELLHNVVTAPM 208 (424)
Q Consensus 186 I~~~~~~y~~A~~~~~~a~~~P~ 208 (424)
++...++|.+|..+|..++..-.
T Consensus 156 ~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998433
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=91.14 E-value=1.5 Score=40.58 Aligned_cols=91 Identities=8% Similarity=0.030 Sum_probs=63.4
Q ss_pred hhccccchHHHHHHHHhhCCCCCC--cchHHHHHHHHHHHccChHHHHhccccccc--c-ccC-chhhHHHHHHHHHHHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIY--E-INL-PRDFFLYCYYGGMIFI 188 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~--lT~~h~~l~rlcL~~~~y~~Al~il~~~i~--~-~~~-~~~~l~Y~YY~G~I~~ 188 (424)
.+..-.++..+..|+......... ....+..+..++...++|+.|+....+.+- . .+. +......++..|.++.
T Consensus 128 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~ 207 (293)
T 2qfc_A 128 KVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY 207 (293)
T ss_dssp SSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH
Confidence 334566778888887433222111 133566777888889999999998888652 1 111 1223367888999999
Q ss_pred hhhcHHHHHHHHHHHhc
Q 014453 189 GQKRFRKALELLHNVVT 205 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~ 205 (424)
.+++|.+|..+|..++.
T Consensus 208 ~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 208 LDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999999998
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.14 E-value=2.1 Score=39.80 Aligned_cols=93 Identities=10% Similarity=-0.028 Sum_probs=66.3
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC--------------------
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-------------------- 172 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-------------------- 172 (424)
...+..-.++..++.|+ ..+|+. ...+..+.++++..+.++.|...+.+-+-.-+.
T Consensus 128 ~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 128 MQESNYTDALPLLXDAW-QLSNQN---GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTTSC---HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred HhCCCHHHHHHHHHHHH-HhCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 35666777888888886 456654 356888999999999999999988875321110
Q ss_pred -----------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 173 -----------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 173 -----------~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.-+....+|..|.++...++|.+|...|..++. .|..
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 012345666777888888888888888888887 6664
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=91.07 E-value=6.7 Score=38.73 Aligned_cols=89 Identities=9% Similarity=0.086 Sum_probs=66.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. ++|+ ...+..+..++...++|+.|+..+.+.+-.. | .....++..|.++...++|
T Consensus 255 ~~~~~~~A~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 255 LKNNLLDAQVLLQESIN-LHPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLN--P-EYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HTTCHHHHHHHHHHHHH-HCCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCH
T ss_pred hcccHHHHHHHHHHHHh-cCCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccC--C-CCHHHHHHHHHHHHhcCCH
Confidence 44555667778888864 4554 3457778888889999999999888754321 1 2345577889999999999
Q ss_pred HHHHHHHHHHhc-ccCcc
Q 014453 194 RKALELLHNVVT-APMSS 210 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~~ 210 (424)
.+|..+|..++. .|...
T Consensus 327 ~~A~~~~~~a~~~~~~~~ 344 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPENV 344 (537)
T ss_dssp HHHHHHHHHHHHHCTTCS
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 999999999998 67653
No 116
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=91.02 E-value=5.5 Score=37.44 Aligned_cols=123 Identities=7% Similarity=0.031 Sum_probs=78.6
Q ss_pred HHHHhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHH
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM 185 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~ 185 (424)
.....+..-.++..+..|+..... +.......+..+..++...++|+.|+..+.+.+-.. ..+......++..|.
T Consensus 56 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 333456666777777777644322 222334567778888999999999998887754321 113445778889999
Q ss_pred HHHhhhc--------------------HHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHHHHhcCCCC
Q 014453 186 IFIGQKR--------------------FRKALELLHNVVT-APMSSINAIAVEAYKKYILVSLIHHGQFS 234 (424)
Q Consensus 186 I~~~~~~--------------------y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~ 234 (424)
++...++ |.+|..+|..++. .+..........++..+..+..- .|+..
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~ 204 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL-LGNFR 204 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTBHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-ccCHH
Confidence 9999999 9999999999998 44332222233444443333333 35543
No 117
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=91.01 E-value=9.7 Score=35.25 Aligned_cols=110 Identities=9% Similarity=-0.043 Sum_probs=73.2
Q ss_pred hcchHHHHHHHHHHHHHH---HHhhcc-------ccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccc
Q 014453 95 RYVPEKFINVCKRYKDQV---LLLEAP-------IRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLE 164 (424)
Q Consensus 95 r~~~~~~~~l~~~~~~~~---~~~~~~-------~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~ 164 (424)
...++.|..++..+.... .+.+.. -.++..+..|+..++|+. ..+|..+..+....++++.|..+.+
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~ 123 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYN 123 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTC---HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345555665555543321 123333 457778889986566654 4578899999999999999999888
Q ss_pred cccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 165 DDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 165 ~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
+-+- ++ |.+.-..++.-|.++...+++.+|...|..|+. .|..
T Consensus 124 ~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 167 (308)
T 2ond_A 124 RLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR 167 (308)
T ss_dssp HHHT-SS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC
T ss_pred HHHh-cc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Confidence 8653 22 222211233346778889999999999999999 4543
No 118
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=90.98 E-value=1.1 Score=34.64 Aligned_cols=65 Identities=11% Similarity=0.088 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...+...++|+.|...+.+.+-..+ .....++..|.++...++|.+|..+|..++. .|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 456677788899999999998888653211 2356677889999999999999999999998 6654
No 119
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.97 E-value=1.9 Score=37.54 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=67.8
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..+..++.. .|.. ...+..+..++...++|+.|...+.+.+-..+ +....++..|.++...++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA-GMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE---NDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHcCC
Confidence 3456666777888888743 4433 34677888899999999999999888543211 234567788999999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|.+|..+|..++. .|..
T Consensus 175 ~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 175 LDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp CHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 9999999999998 6654
No 120
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=90.94 E-value=1.1 Score=48.25 Aligned_cols=92 Identities=13% Similarity=0.025 Sum_probs=72.9
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
.....++.-.|+..++.|+ +++|+. ...|..+-.++...++|+.|+....+.+- ++ | +....++..|.++..+
T Consensus 52 ~l~~~g~~~eA~~~~~~Al-~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~-P-~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 52 VLQQQGKLQEALMHYKEAI-RISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQ-IN-P-AFADAHSNLASIHKDS 124 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CCHHHHHHHHHHHHHc
Confidence 3345666777888999997 567753 45688889999999999999998888653 22 2 3456677889999999
Q ss_pred hcHHHHHHHHHHHhc-ccCc
Q 014453 191 KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~ 209 (424)
++|++|..+|+.|+. .|..
T Consensus 125 g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp TCHHHHHHHHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 7864
No 121
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=90.88 E-value=0.66 Score=41.55 Aligned_cols=68 Identities=18% Similarity=0.095 Sum_probs=54.2
Q ss_pred cchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 139 lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
....+..+...+...++|+.|+..+.+-+-. + | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 110 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAI-R-P-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-C-C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc
Confidence 3456778888999999999999988885432 1 1 2345667889999999999999999999999 6765
No 122
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=90.82 E-value=3.1 Score=39.79 Aligned_cols=96 Identities=7% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhcccccccccc---C-chhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---L-PRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~-~~~~l~Y~YY~G~I~ 187 (424)
..+..-.|+..++.|+..+.. ++......+..+..++...++|+.|+....+.+--.. . +.....-++..|.++
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 456677788889999755433 2223456788888899999999999988887543211 1 234566778889999
Q ss_pred HhhhcHHHHHHHHHHHhc-ccCc
Q 014453 188 IGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...++|.+|..+|..|+. .|..
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999998 5554
No 123
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.70 E-value=2.5 Score=38.52 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
.+..+..++...++|+.|...+.+-+-.. | +....++..|.++...++|.+|..+|..++.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR--P-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555444432110 1 1123334445555555555555555555554
No 124
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.70 E-value=6.5 Score=35.68 Aligned_cols=84 Identities=8% Similarity=0.021 Sum_probs=42.3
Q ss_pred cccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHH
Q 014453 118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (424)
Q Consensus 118 ~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~ 197 (424)
.-.++..+..|+. ++|+. ...+..+..++...++|+.|+..+.+.+-..+ . ....+++.|.++...++|.+|.
T Consensus 107 ~~~A~~~~~~a~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 107 NEHARRYLSKATT-LEKTY---GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK--G-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHHHHHHHHHHT-TCTTC---THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT--T-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH-hCCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc--c-cHHHHHHHHHHHHHHhhHHHHH
Confidence 3345555555542 23321 23455556666666666666666555432111 1 1122333566666666666666
Q ss_pred HHHHHHhc-ccC
Q 014453 198 ELLHNVVT-APM 208 (424)
Q Consensus 198 ~~~~~a~~-~P~ 208 (424)
.+|..++. .|.
T Consensus 180 ~~~~~al~~~~~ 191 (330)
T 3hym_B 180 RFFSQALSIAPE 191 (330)
T ss_dssp HHHHHHHTTCTT
T ss_pred HHHHHHHHhCCC
Confidence 66666665 443
No 125
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=90.65 E-value=0.82 Score=41.65 Aligned_cols=96 Identities=9% Similarity=0.009 Sum_probs=62.7
Q ss_pred HhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~ 188 (424)
..+..-.++..+..++..... ++......+..+..++...++|+.|...+.+.+-.. ..+......++..|.++.
T Consensus 195 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 274 (338)
T 3ro2_A 195 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 274 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 455555666667776644322 222233467777788888888888888877653211 112344666777888888
Q ss_pred hhhcHHHHHHHHHHHhc-ccCc
Q 014453 189 GQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 189 ~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..++|.+|..+|..++. .|..
T Consensus 275 ~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 275 LLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHhc
Confidence 88899999998888887 4443
No 126
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=90.52 E-value=5.7 Score=37.81 Aligned_cols=98 Identities=7% Similarity=-0.035 Sum_probs=69.9
Q ss_pred HHHHhhccccchHHHHHHHHhhCC--CCCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHH
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQS--STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGM 185 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~--~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~ 185 (424)
.....+..-.++..++.|+..... +.......+..+..++...++|+.|+..+.+.+-.. ..+......++..|.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 333556666777778777654322 223344567788888999999999998888754321 113456777888999
Q ss_pred HHHhhhc-----------------HHHHHHHHHHHhc-ccC
Q 014453 186 IFIGQKR-----------------FRKALELLHNVVT-APM 208 (424)
Q Consensus 186 I~~~~~~-----------------y~~A~~~~~~a~~-~P~ 208 (424)
++...++ |.+|..+|..++. .+.
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999988 443
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=90.47 E-value=0.89 Score=46.15 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=66.1
Q ss_pred cccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHH
Q 014453 118 PIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKAL 197 (424)
Q Consensus 118 ~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~ 197 (424)
.-.|+..++.|+. ++|+. ...+..+..++...++|+.|+....+.+-- + | +....+|..|.++..+++|++|.
T Consensus 22 ~~~A~~~~~~Al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~-p-~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 22 YENAIKFYSQAIE-LNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIEL-D-K-KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp HHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-C-T-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHH-hCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445666777764 45543 456788889999999999999988886532 2 2 34567778899999999999999
Q ss_pred HHHHHHhc-ccCcc
Q 014453 198 ELLHNVVT-APMSS 210 (424)
Q Consensus 198 ~~~~~a~~-~P~~~ 210 (424)
.+|+.|+. .|...
T Consensus 95 ~~~~~al~~~p~~~ 108 (477)
T 1wao_1 95 RDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHHHSTTCT
T ss_pred HHHHHHHHhCCCCH
Confidence 99999998 77754
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=90.43 E-value=1.4 Score=37.89 Aligned_cols=87 Identities=7% Similarity=0.084 Sum_probs=62.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..|+ +++ ...+..+..++...++|+.|+..+.+.+-. + | .....++..|.++...++|
T Consensus 18 ~~~~~~~A~~~~~~a~---~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~-~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 18 DKKDWKGALDAFSAVQ---DPH----SRICFNIGCMYTILKNMTEAEKAFTRSINR-D-K-HLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HTTCHHHHHHHHHTSS---SCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCH
T ss_pred HhCCHHHHHHHHHHHc---CCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-c-cchHHHHHHHHHHHHcccH
Confidence 3444455566666553 332 346778888889999999999888875532 1 1 2455677889999999999
Q ss_pred HHHHHHHHHHhc-ccCcc
Q 014453 194 RKALELLHNVVT-APMSS 210 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~~ 210 (424)
.+|..+|..++. .|...
T Consensus 88 ~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHhCCCcc
Confidence 999999999998 77653
No 129
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=90.36 E-value=7.2 Score=34.28 Aligned_cols=107 Identities=7% Similarity=-0.031 Sum_probs=66.8
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHH------------------ccChHHHHhccccccccccCc--
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL------------------AKCYKAGLSVLEDDIYEINLP-- 173 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~------------------~~~y~~Al~il~~~i~~~~~~-- 173 (424)
..+..-.++..+..++.. .|+.....-.+-.+-..... .++++.|+..+.+-+-..|..
T Consensus 53 ~~~~~~~A~~~~~~~l~~-~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 131 (225)
T 2yhc_A 53 KNADLPLAQAAIDRFIRL-NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY 131 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT
T ss_pred hcCCHHHHHHHHHHHHHH-CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh
Confidence 456667788888888754 55543221122222222221 467889988888765443321
Q ss_pred ------------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHH
Q 014453 174 ------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (424)
Q Consensus 174 ------------~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iL 224 (424)
.....+.+..|.++...++|.+|...|+.++. .|... ...+++..+..
T Consensus 132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~ 192 (225)
T 2yhc_A 132 TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ---ATRDALPLMEN 192 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC---ccHHHHHHHHH
Confidence 12234557889999999999999999999998 78753 22345544443
No 130
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.36 E-value=1 Score=43.72 Aligned_cols=91 Identities=14% Similarity=0.066 Sum_probs=67.1
Q ss_pred ccchHHHHHHHHhhCCC--CCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHHHhhhcH
Q 014453 119 IRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 119 ~~~i~~L~~A~~rl~~~--~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
-.++...+.++...... ......++..+.++....|+|..|++++..-.... +.....+.++...|.++...++|
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNL 191 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcH
Confidence 34555566665443222 22234678889999999999999999988754322 22356788999999999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..+.+ .|..
T Consensus 192 ~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 192 AKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 999999999998 5554
No 131
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=90.28 E-value=9.3 Score=34.95 Aligned_cols=85 Identities=7% Similarity=-0.080 Sum_probs=42.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. ..|.. ...+..+..++...++|+.|+..+.+-+-..+ .....++..|.++...++|
T Consensus 132 ~~~~~~~A~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 132 DGADYTAAITFLDKILE-VCVWD---AELRELRAECFIKEGEPRKAISDLKAASKLKS---DNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS---CCHHHHHHHHHHHHHHTCH
T ss_pred HccCHHHHHHHHHHHHH-hCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCH
Confidence 34444445555555543 23322 23455555566666666666665555432111 1223344555555555555
Q ss_pred HHHHHHHHHHhc
Q 014453 194 RKALELLHNVVT 205 (424)
Q Consensus 194 ~~A~~~~~~a~~ 205 (424)
.+|..+|..++.
T Consensus 205 ~~A~~~~~~a~~ 216 (359)
T 3ieg_A 205 ELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555555
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=90.27 E-value=6.1 Score=38.64 Aligned_cols=88 Identities=9% Similarity=0.010 Sum_probs=65.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. .+|+ ...+..+..++...++|+.|+..+.+-+-..+ .....++..|.++...++|
T Consensus 249 ~~~~~~~A~~~~~~~l~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIE-LFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDS---NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HSSCHHHHHHHHHHHHH-HCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT---TCTHHHHHHHHHHHHTTCT
T ss_pred HCCCHHHHHHHHHHHHh-hCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc---CCHHHHHHHHHHHHHhCCH
Confidence 44555667777777764 4444 66788888899999999999888887543211 1234567788999999999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 321 ~~A~~~~~~~~~~~~~~ 337 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPEN 337 (514)
T ss_dssp THHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHhChhh
Confidence 999999999998 6654
No 133
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=90.21 E-value=0.37 Score=39.15 Aligned_cols=65 Identities=9% Similarity=0.234 Sum_probs=51.1
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
|..+=..+...|+|+.|+....+.|- ++ | +...+++..|.++..+++|.+|..+|..|+. .|...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~-~~-p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE-LD-P-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hC-C-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 44555678889999999999888653 22 2 2456778889999999999999999999998 67643
No 134
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.19 E-value=7.8 Score=36.69 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=64.4
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..+..++. ++|+. ...+..+..++...+.|+.|...+.+-+-. + | +....++..|.++...++
T Consensus 112 ~~~g~~~~A~~~~~~al~-~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQ-YNPDL---YCVRSDLGNLLKALGRLEEAKACYLKAIET-Q-P-NFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHSCSSHHHHHHHHHHH-HCTTC---THHHHHHHHHHHTTSCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHHHHH-hCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHcCC
Confidence 345666777777877763 45543 345677788888889999998887765431 1 2 234456677889999999
Q ss_pred HHHHHHHHHHHhc-ccCc
Q 014453 193 FRKALELLHNVVT-APMS 209 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~~ 209 (424)
|.+|..+|+.++. .|..
T Consensus 185 ~~~A~~~~~~al~~~p~~ 202 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp HHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 9999999999998 6654
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.06 E-value=0.3 Score=36.96 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
.+..+..++...++|+.|...+.+.+-..+ .....++..|.++...++|.+|..+|..++. .|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 355677788899999999998887543211 1345667889999999999999999999998 666
No 136
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=89.89 E-value=0.47 Score=46.21 Aligned_cols=95 Identities=6% Similarity=-0.006 Sum_probs=69.1
Q ss_pred HHHHhhccccchHHHHHHHHhhCCCC-CCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHh
Q 014453 111 QVLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG 189 (424)
Q Consensus 111 ~~~~~~~~~~~i~~L~~A~~rl~~~~-~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~ 189 (424)
.....+..-.++..+..++. +.|+. ......+..+..++...++|+.|+..+.+-+-. + | +....++..|.++..
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~-p-~~~~~~~~l~~~~~~ 341 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-E-P-DNVNALKDRAEAYLI 341 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-c-ccHHHHHHHHHHHHH
Confidence 33445566667788888875 45542 222346778888899999999999988885421 1 2 234567788999999
Q ss_pred hhcHHHHHHHHHHHhc-ccCc
Q 014453 190 QKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.++|.+|..+|+.++. .|..
T Consensus 342 ~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 342 EEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp TTCHHHHHHHHHHHHTTSSSC
T ss_pred hcCHHHHHHHHHHHHHhCcch
Confidence 9999999999999998 6765
No 137
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=89.70 E-value=0.78 Score=46.33 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=8.0
Q ss_pred hcHHHHHHHHHHHhc
Q 014453 191 KRFRKALELLHNVVT 205 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~ 205 (424)
++|.+|..+|+.|+.
T Consensus 235 g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 235 KISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 555555555555554
No 138
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=89.66 E-value=1.2 Score=45.56 Aligned_cols=61 Identities=16% Similarity=0.009 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
.+..+...+...++|+.|+..+.+.+-. + | +....++..|.++...++|++|..+|+.++.
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLAL-H-P-GHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTT-S-T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3444455555555555555554443221 1 1 1233344445555555555555555555555
No 139
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.58 E-value=0.7 Score=41.17 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=65.2
Q ss_pred ccccchHHHHHHHHhh----CCCCCCcchHHHHHHHHHHHccChHHHHhccccccccc-----cCchhhHHHHHHHHHHH
Q 014453 117 APIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI-----NLPRDFFLYCYYGGMIF 187 (424)
Q Consensus 117 ~~~~~i~~L~~A~~rl----~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~-----~~~~~~l~Y~YY~G~I~ 187 (424)
.+-.++..++.|+..+ .++.......+..+...+...++|+.|+..+.+.+-.. +.+......++..|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 3445566666665433 22333445677888899999999999999888754321 11245667788889999
Q ss_pred HhhhcHHHHHHHHHHHhcc
Q 014453 188 IGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~~ 206 (424)
...++|.+|..+|..++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 9999999999999999984
No 140
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.51 E-value=1.1 Score=42.43 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHH
Q 014453 257 MELVNTYNTGKIVELETYVQTNREKFESDNNLGLVKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQ 336 (424)
Q Consensus 257 ~~L~~a~~~gdl~~~~~~l~~~~~~f~~Dgn~~Lv~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~ 336 (424)
..+-+++..||..+|=+...+...- ..-.--++..+...++...+..+.++|.+|+++++++.|+.+|++|+...+.+
T Consensus 146 l~le~al~eGnY~kff~l~~~~~~p--~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 146 IKLDRWLMEGSYQKAWDLLQSGSQN--ISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE 223 (274)
T ss_dssp HHHHHHHHHTCSHHHHHHHHTCTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 3566788889988876655432110 00012378888999999999999999999999999999999999998887764
Q ss_pred hHHcCceEEEEecCCCEEEEec
Q 014453 337 MIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 337 mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.|. .+ .+|.|.|..
T Consensus 224 ---~gW---~~--~~~~v~F~~ 237 (274)
T 4b4t_T 224 ---RNW---PI--VNSKVYFNN 237 (274)
T ss_dssp ---TTC---CC--CSSCCCC--
T ss_pred ---cCC---EE--eCCEeEECC
Confidence 352 22 256666753
No 141
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=89.48 E-value=0.91 Score=34.00 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=42.7
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.=.-++|.++|..+++. .+++-.-|..+..+|.|.|.||...++|.-.+
T Consensus 18 ~~Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HCSEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HcCeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 34568999999999998 78888899999999999999998778887664
No 142
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=89.19 E-value=2 Score=40.25 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=42.7
Q ss_pred HHHHccChHHHHhccccccccccCchh-hHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 149 LCLLAKCYKAGLSVLEDDIYEINLPRD-FFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 149 lcL~~~~y~~Al~il~~~i~~~~~~~~-~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.++..++|+.|+..+.+.+- .+ |.. ....++..|.++...++|.+|..+|..++. .|..
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVR-LD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHhhcccHHHHHHHHHHHHH-hC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 34477888888888877543 12 221 456667788899999999999999999988 6653
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.13 E-value=0.77 Score=35.51 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..+..+...+...++|+.|...+.+.+-.. | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--P-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--C-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 346677788889999999999888754321 1 2355677889999999999999999999998 6654
No 144
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=88.70 E-value=1.3 Score=39.28 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=64.3
Q ss_pred HhhccccchHHHHHHHHhh----CCCCCCcchHHHHHHHHHHHccChHHHHhccccccccc--------c----------
Q 014453 114 LLEAPIRGVGPMLTAIRKI----QSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI--------N---------- 171 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl----~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~--------~---------- 171 (424)
..+..-.++..+..++... .++.......+..+..++...++|+.|...+.+.+-.. .
T Consensus 139 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 218 (283)
T 3edt_B 139 NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHA 218 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 4555566777777776542 12223344567788889999999999988877643210 0
Q ss_pred ----------------------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcc
Q 014453 172 ----------------------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 172 ----------------------------~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~ 206 (424)
........++..|.++...++|.+|..+|..++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 219 EEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01345567788899999999999999999998864
No 145
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.42 E-value=18 Score=34.62 Aligned_cols=89 Identities=12% Similarity=0.125 Sum_probs=53.9
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHH-----------HH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYC-----------YY 182 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~-----------YY 182 (424)
..+..-.++..+..++.. +|+. ...+..+..++...++++.|+..+.+-+- .+ |.....+. .-
T Consensus 189 ~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKL-KNDN---TEAFYKISTLYYQLGDHELSLSEVRECLK-LD-QDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HTTCGGGGHHHHHHHHHH-HCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CChHHHHHHHHHHHHHHHHHH
Confidence 455566666777776643 3322 34566777777777888877777766432 11 11111111 12
Q ss_pred HHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 183 GGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 183 ~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
.|.++...++|.+|..+|..++. .|.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 27777888888888888888887 565
No 146
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.41 E-value=2.3 Score=43.05 Aligned_cols=88 Identities=9% Similarity=-0.024 Sum_probs=49.2
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. ++|.. ...+..+...+...++++.|+.++.+-+-.. |. ....++..|.++...++|
T Consensus 385 ~~g~~~~A~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 385 CVNKISEARRYFSKSST-MDPQF---GPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QG-THLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TT-CSHHHHHHHHHHHHHTCH
T ss_pred HhccHHHHHHHHHHHHH-hCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cc-chHHHHHHHHHHHHcCCH
Confidence 34445556666666653 33332 2346666777777777777777766533211 11 223334456666666666
Q ss_pred HHHHHHHHHHhc-ccC
Q 014453 194 RKALELLHNVVT-APM 208 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~ 208 (424)
++|..+|..++. .|.
T Consensus 458 ~~A~~~~~~~~~~~~~ 473 (597)
T 2xpi_A 458 LLANEYLQSSYALFQY 473 (597)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 666666666665 444
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.26 E-value=3.2 Score=38.24 Aligned_cols=93 Identities=6% Similarity=0.035 Sum_probs=67.3
Q ss_pred ccccchHHHHHHHHhhCCCCCCc--chHHHHHHHHHHHccChHHHHhcccccccc---c-cCchhhHHHHHHHHHHHHhh
Q 014453 117 APIRGVGPMLTAIRKIQSSTEHL--TTLHPEFLQLCLLAKCYKAGLSVLEDDIYE---I-NLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 117 ~~~~~i~~L~~A~~rl~~~~~~l--T~~h~~l~rlcL~~~~y~~Al~il~~~i~~---~-~~~~~~l~Y~YY~G~I~~~~ 190 (424)
+.-.++..+..|+.......... ...+..+..++...++|+.|+....+.+-. . ..+......+|..|.++..+
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 45667888888886322222221 224667777888899999999888876521 1 11346677889999999999
Q ss_pred hcHHHHHHHHHHHhc-ccCc
Q 014453 191 KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~ 209 (424)
++|.+|..++..++. ++..
T Consensus 210 ~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 210 SRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHc
Confidence 999999999999998 5543
No 148
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=88.15 E-value=1.7 Score=43.98 Aligned_cols=91 Identities=8% Similarity=0.046 Sum_probs=57.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccc---c-CchhhHHHHHHHHHHHHh
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---N-LPRDFFLYCYYGGMIFIG 189 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~-~~~~~l~Y~YY~G~I~~~ 189 (424)
..+..-.++..+..++. +.|... .+ +..+..++...|+++.|+.++++-+-.. + .|......++..|.++..
T Consensus 453 ~~g~~~~A~~~~~~~~~-~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-LFQYDP-LL--LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-HCCCCH-HH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCCh-HH--HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 34555556666776653 344321 11 5677777778888888877777643211 0 144445666677777777
Q ss_pred hhcHHHHHHHHHHHhc-ccC
Q 014453 190 QKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~-~P~ 208 (424)
.++|++|...|+.++. .|.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSC
T ss_pred hcCHHHHHHHHHHHHHhCCC
Confidence 7888888888887776 554
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=88.07 E-value=2.5 Score=35.42 Aligned_cols=87 Identities=7% Similarity=0.070 Sum_probs=62.3
Q ss_pred hccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHH-HHhhhcH-
Q 014453 116 EAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI-FIGQKRF- 193 (424)
Q Consensus 116 ~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I-~~~~~~y- 193 (424)
+..-.++..++.++. .+|+. ...+..+..++...++|+.|...+.+.+-. + |. ....++..|.+ +...++|
T Consensus 24 ~~~~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~-~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 24 QNPEAQLQALQDKIR-ANPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQL-R-GE-NAELYAALATVLYYQASQHM 96 (177)
T ss_dssp ---CCCCHHHHHHHH-HCCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-H-CS-CHHHHHHHHHHHHHHTTTCC
T ss_pred cCHHHHHHHHHHHHH-hCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CC-CHHHHHHHHHHHHHhcCCcc
Confidence 344567777888874 34543 356888899999999999999988885431 1 22 24455666777 8888999
Q ss_pred -HHHHHHHHHHhc-ccCc
Q 014453 194 -RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 -~~A~~~~~~a~~-~P~~ 209 (424)
.+|..+|..++. .|..
T Consensus 97 ~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNE 114 (177)
T ss_dssp CHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHhCCCc
Confidence 999999999998 6664
No 150
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=87.69 E-value=2.1 Score=34.88 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...+...++|+.|...+.+.+-.. | .....++..|.++...++|.+|..+|..++. .|..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 46677788899999999999888754321 1 2456677889999999999999999999998 6654
No 151
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=87.45 E-value=1.8 Score=44.24 Aligned_cols=88 Identities=6% Similarity=-0.218 Sum_probs=43.6
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh---
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ--- 190 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~--- 190 (424)
..++.-.++..++.|+. ++|+. ...+..+..++...++|+.|...+.+.+-. + | +....++..|.++...
T Consensus 69 ~~g~~~~A~~~~~~al~-~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 69 TQQRHAEAAVLLQQASD-AAPEH---PGIALWLGHALEDAGQAEAAAAAYTRAHQL-L-P-EEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCC
T ss_pred HCCCHHHHHHHHHHHHh-cCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C-CCHHHHHHHHHHHHHhhcc
Confidence 34444445555555542 23322 234555555555556666665555553221 1 1 1223344555666666
Q ss_pred hcHHHHHHHHHHHhc-ccC
Q 014453 191 KRFRKALELLHNVVT-APM 208 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~ 208 (424)
+++.+|..+|..++. .|.
T Consensus 142 g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 666666666666665 444
No 152
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.18 E-value=1.9 Score=42.30 Aligned_cols=87 Identities=9% Similarity=-0.004 Sum_probs=68.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..+..-.++..+..++. .+|+ ...+..+...++..++|+.|+..+.+-+-. + | +....++..|.++...++|
T Consensus 18 ~~g~~~~A~~~~~~al~-~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALE-LKED----PVFYSNLSACYVSVGDLKKVVEMSTKALEL-K-P-DYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HTSCHHHHHHHHHHHHH-HCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-S-CCHHHHHHHHHHHHHTTCH
T ss_pred HhccHHHHHHHHHHHHh-cCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc-C-h-HHHHHHHHHHHHHHHHhhH
Confidence 45556677888888874 4554 467888899999999999999998886532 1 2 2446677889999999999
Q ss_pred HHHHHHHHHHhc-ccC
Q 014453 194 RKALELLHNVVT-APM 208 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~ 208 (424)
.+|...|..++. .|.
T Consensus 90 ~~A~~~~~~~~~~~~~ 105 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDF 105 (514)
T ss_dssp HHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 999999999998 553
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.06 E-value=1.2 Score=33.94 Aligned_cols=66 Identities=12% Similarity=0.128 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..+..+...+...++|+.|...+.+-+-.. | +....++..|.++...++|.+|..+|..++. .|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 346677788899999999999888754321 1 2345667789999999999999999999998 5654
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.07 E-value=1.2 Score=35.09 Aligned_cols=57 Identities=21% Similarity=0.089 Sum_probs=40.3
Q ss_pred ccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 153 ~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.++|+.|+..+.+-+-.-....+....++..|.++...++|.+|..+|+.++. .|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 46677777777665431100134667788999999999999999999999999 7876
No 155
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.05 E-value=1.8 Score=32.67 Aligned_cols=48 Identities=10% Similarity=0.208 Sum_probs=39.4
Q ss_pred HHHHHHHhhhh---cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 301 RNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 301 ~~I~~l~~~Ys---~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
..|..+-+.-. +++..+||+++|++ ...+...|.+|..+|.|...-+.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~~~g~~ 67 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEAGT 67 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEECSS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecCCC
Confidence 44555555566 89999999999998 78999999999999999876443
No 156
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=85.64 E-value=2 Score=32.86 Aligned_cols=62 Identities=8% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhh---cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCcc
Q 014453 300 KRNIQRLTQTYL---TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQY 363 (424)
Q Consensus 300 r~~I~~l~~~Ys---~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~ 363 (424)
+..|..+-+... +++..+||++||++ ...+...|.+|..+|.|.-. ....|.-.-..+.+.|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~~~~~ 76 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCcHHhc
Confidence 344556666677 89999999999998 78999999999999999643 3333444444444433
No 157
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=85.56 E-value=1.3 Score=41.01 Aligned_cols=93 Identities=10% Similarity=0.011 Sum_probs=68.3
Q ss_pred HhhccccchHHHHHHHHhhC---CCCCCcchHHHHHHHHHHHccChHHHHhccccccccc---cCchhhHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQ---SSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI---NLPRDFFLYCYYGGMIF 187 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~---~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~---~~~~~~l~Y~YY~G~I~ 187 (424)
..++.-.|+..+..|+..+. .+......++..+..++...++|+.|+..+.+.+--. .........++..|.++
T Consensus 167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL 246 (293)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 45556677888888875443 2233344577788889999999999999988764311 11223577888999999
Q ss_pred Hhhh-cHHHHHHHHHHHhcc
Q 014453 188 IGQK-RFRKALELLHNVVTA 206 (424)
Q Consensus 188 ~~~~-~y~~A~~~~~~a~~~ 206 (424)
..++ +|++|..+|..|+..
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHH
Confidence 9999 589999999999983
No 158
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=85.47 E-value=4.4 Score=40.07 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=66.3
Q ss_pred HHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhc
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKR 192 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~ 192 (424)
...+..-.++..++.++. .+|+. ...+..+..++...++|+.|+..+.+-+-. + | +....++..|.++...++
T Consensus 36 ~~~g~~~~A~~~~~~al~-~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p-~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 36 FTAKNFNEAIKYYQYAIE-LDPNE---PVFYSNISACYISTGDLEKVIEFTTKALEI-K-P-DHSKALLRRASANESLGN 108 (537)
T ss_dssp HHTTCCC-CHHHHHHHHH-HCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHHHHh-hCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-C-chHHHHHHHHHHHHHcCC
Confidence 356677889999999874 46643 467888899999999999999998886432 1 2 245677889999999999
Q ss_pred HHHHHHHHHHHhc-ccC
Q 014453 193 FRKALELLHNVVT-APM 208 (424)
Q Consensus 193 y~~A~~~~~~a~~-~P~ 208 (424)
|.+|...|. ++. .|.
T Consensus 109 ~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 109 FTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HHHHHHHHH-HHC----
T ss_pred HHHHHHHHH-HHhcCCC
Confidence 999999996 665 565
No 159
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.33 E-value=4.2 Score=37.63 Aligned_cols=111 Identities=13% Similarity=0.016 Sum_probs=72.6
Q ss_pred HhhccccchHHHHHHHHhhCCC--CCCcchHHHHHHHHHHHccChHHHHhcccccccccc---CchhhHHHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSS--TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFI 188 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~--~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~~~~~l~Y~YY~G~I~~ 188 (424)
..+..-.++..+..|+.-.... +......+..+-.++...++|+.|+..+.+.+--.+ .+......+.-.|.++.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3555666777777776443221 122234667788888899999999988887643111 12334667778899999
Q ss_pred hh-hcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHH
Q 014453 189 GQ-KRFRKALELLHNVVT-APMSSINAIAVEAYKKYIL 224 (424)
Q Consensus 189 ~~-~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iL 224 (424)
.. ++|.+|..+|..|+. .|.........+++.++-.
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 166 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCAD 166 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 96 999999999999998 6654322222345544433
No 160
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.06 E-value=0.88 Score=43.76 Aligned_cols=66 Identities=11% Similarity=0.007 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..|..+..+++..++|+.|+..+.+.+- ++ .+....+|..|.++..+++|.+|..+|..++. .|..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~-~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLT-EE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 3677888888999999999998888653 22 13466778999999999999999999999998 6764
No 161
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=84.84 E-value=2.4 Score=30.91 Aligned_cols=34 Identities=6% Similarity=0.170 Sum_probs=31.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
..++.++||+.+|++ ...+..+|..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEec
Confidence 469999999999998 8999999999999999865
No 162
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=84.46 E-value=3.7 Score=37.36 Aligned_cols=88 Identities=8% Similarity=-0.073 Sum_probs=64.0
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~ 194 (424)
.+..-.++..+..++. .+|+ ....+..+...+...++|+.|...+.+-+-. + | .....++..|.++...++|.
T Consensus 34 ~~~~~~A~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~-~~~~~~~~la~~~~~~~~~~ 106 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQ-AAPE---REEAWRSLGLTQAENEKDGLAIIALNHARML-D-P-KDIAVHAALAVSHTNEHNAN 106 (327)
T ss_dssp TTCHHHHHHHHHHHHH-HCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T-TCHHHHHHHHHHHHHTTCHH
T ss_pred hccHHHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-c-CCHHHHHHHHHHHHHcCCHH
Confidence 3444456666666664 3443 2345677888999999999999988875432 1 1 23456677899999999999
Q ss_pred HHHHHHHHHhc-ccCc
Q 014453 195 KALELLHNVVT-APMS 209 (424)
Q Consensus 195 ~A~~~~~~a~~-~P~~ 209 (424)
+|..+|..++. .|..
T Consensus 107 ~A~~~~~~~~~~~~~~ 122 (327)
T 3cv0_A 107 AALASLRAWLLSQPQY 122 (327)
T ss_dssp HHHHHHHHHHHTSTTT
T ss_pred HHHHHHHHHHHhCCcc
Confidence 99999999998 6654
No 163
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=84.13 E-value=6.2 Score=38.95 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.-.|..+....+..++++.|...+++-+- .+ | .. ..+...|.++...|+|++|.++|..|++ .|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~-Ln-~-s~-~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGID-LE-M-SW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-C-CH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-cC-C-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 34555565667778999999999998653 22 2 23 3457889999999999999999999999 7864
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=84.04 E-value=1.9 Score=40.96 Aligned_cols=95 Identities=11% Similarity=-0.080 Sum_probs=63.2
Q ss_pred HHHHHHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHH
Q 014453 107 RYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMI 186 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I 186 (424)
.|.....+.+..-.+...+..++ ...+... .+-....+++..+.|+.|+..+.+.+. .+.+.....-+|+.|++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~---~~~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAP---VAGSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK-WPDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSC---CTTCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH---hcCCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc-cCCcccHHHHHHHHHHH
Confidence 45555555555544544443332 1223333 455666699999999999999985433 11122223467899999
Q ss_pred HHhhhcHHHHHHHHHHHhccc
Q 014453 187 FIGQKRFRKALELLHNVVTAP 207 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~~P 207 (424)
+..++++.+|..+|+.+..-|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~ 201 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSP 201 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTST
T ss_pred HHHCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999754
No 165
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=84.00 E-value=3.7 Score=38.30 Aligned_cols=81 Identities=14% Similarity=0.073 Sum_probs=61.3
Q ss_pred cccchHHHHHHHHh-hCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHH
Q 014453 118 PIRGVGPMLTAIRK-IQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKA 196 (424)
Q Consensus 118 ~~~~i~~L~~A~~r-l~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A 196 (424)
.-.++..+...+.. .+|+. +..|..+..++...|+|+.|+..+.++ .....++..|.++..++++.+|
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~---~~~~~~la~~~~~~g~~~~Al~~l~~~--------~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTN---TTFLLMAASIYFYDQNPDAALRTLHQG--------DSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSC---HHHHHHHHHHHHHTTCHHHHHHHHTTC--------CSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcccCCCC---HHHHHHHHHHHHHCCCHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCHHHH
Confidence 34456666666532 23432 456888889999999999999999983 1344667789999999999999
Q ss_pred HHHHHHHhc-ccCc
Q 014453 197 LELLHNVVT-APMS 209 (424)
Q Consensus 197 ~~~~~~a~~-~P~~ 209 (424)
...|+.++. .|..
T Consensus 150 ~~~l~~~~~~~p~~ 163 (291)
T 3mkr_A 150 RKELKKMQDQDEDA 163 (291)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhhCcCc
Confidence 999999998 6654
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=83.39 E-value=3.4 Score=38.25 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+..+...+...++|+.|+..+.+-+-.-+ +...+++..|.++...++|.+|..+|+.++. .|..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 455667788899999999999888654211 2567788899999999999999999999999 6764
No 167
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=82.98 E-value=16 Score=33.71 Aligned_cols=88 Identities=9% Similarity=-0.008 Sum_probs=61.0
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHh---h
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG---Q 190 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~---~ 190 (424)
..+..-.+...+..|+. ++|.. .+..+..+..+....+.++.|..++.+.+-. + |.. +..|.|...+. .
T Consensus 111 ~~~~~~~A~~~~~~al~-~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~---~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLA-IEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTR---HHVYVTAALMEYYCS 182 (308)
T ss_dssp HTTCHHHHHHHHHHHHT-SSSSC--THHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCC---THHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHh-ccccC--ccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCC---HHHHHHHHHHHHHHc
Confidence 44555567777888874 55543 2237888999999999999999998886532 1 111 22233554443 6
Q ss_pred hcHHHHHHHHHHHhc-ccCc
Q 014453 191 KRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~ 209 (424)
+++.+|...|+.++. .|..
T Consensus 183 ~~~~~A~~~~~~al~~~p~~ 202 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKYGDI 202 (308)
T ss_dssp CCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCc
Confidence 899999999999998 7764
No 168
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=82.20 E-value=18 Score=33.93 Aligned_cols=94 Identities=10% Similarity=-0.081 Sum_probs=66.8
Q ss_pred HHhhccccchHHHHHHHHhhCCCC----CCcchHHHHHHHHHHHccChHHHHhcccccccccc--CchhhHHHHHHHHHH
Q 014453 113 LLLEAPIRGVGPMLTAIRKIQSST----EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN--LPRDFFLYCYYGGMI 186 (424)
Q Consensus 113 ~~~~~~~~~i~~L~~A~~rl~~~~----~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~--~~~~~l~Y~YY~G~I 186 (424)
...+..-.++..++.++......+ ......+..+..++...++++.|...+.+-+-..+ .+......++..|.+
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 345666677777888775543222 22345566778888999999999988887542211 122355667788999
Q ss_pred HHhhhcHHHHHHHHHHHhcc
Q 014453 187 FIGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~~ 206 (424)
+...++|.+|..++..++..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999973
No 169
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=82.08 E-value=4.6 Score=33.34 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=48.3
Q ss_pred HHHHHHHHHHccChHHHHhcccccccccc-------C--------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-c
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEIN-------L--------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-A 206 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~-------~--------~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~ 206 (424)
+...-..++..++|..|+....+.+-..+ + .......++..|.+++..++|.+|..++..|+. .
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34445567777888888777666543210 0 123456778889999999999999999999999 6
Q ss_pred cCc
Q 014453 207 PMS 209 (424)
Q Consensus 207 P~~ 209 (424)
|..
T Consensus 94 p~~ 96 (162)
T 3rkv_A 94 ETN 96 (162)
T ss_dssp TTC
T ss_pred Ccc
Confidence 765
No 170
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.35 E-value=7.4 Score=36.19 Aligned_cols=95 Identities=9% Similarity=0.060 Sum_probs=68.0
Q ss_pred hccccchHHHHHHHHhhCCCCC--CcchHHHHHHHHHHHccChHHHHhcccccccccc---CchhhHHHHHHHHHHHHhh
Q 014453 116 EAPIRGVGPMLTAIRKIQSSTE--HLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 116 ~~~~~~i~~L~~A~~rl~~~~~--~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~~~~~l~Y~YY~G~I~~~~ 190 (424)
+.+-.++..++.|+......+. .....+..+..++...++|+.|+..+.+.+--.+ .......+++-.|.++...
T Consensus 129 g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~ 208 (307)
T 2ifu_A 129 LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR 208 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc
Confidence 5667788888888865543221 2235677788889999999999998887543111 1123455777788889999
Q ss_pred hcHHHHHHHHHHHhcccCcc
Q 014453 191 KRFRKALELLHNVVTAPMSS 210 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~~P~~~ 210 (424)
++|.+|..+|+.++..|...
T Consensus 209 g~~~~A~~~~~~al~~p~~~ 228 (307)
T 2ifu_A 209 ADYVAAQKCVRESYSIPGFS 228 (307)
T ss_dssp TCHHHHHHHHHHHTTSTTST
T ss_pred CCHHHHHHHHHHHhCCCCCC
Confidence 99999999999999556543
No 171
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=81.19 E-value=2.9 Score=35.26 Aligned_cols=80 Identities=9% Similarity=-0.129 Sum_probs=55.2
Q ss_pred chHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 014453 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELL 200 (424)
Q Consensus 121 ~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~ 200 (424)
++..++.|+ +++|+. ...|..+..++...|+|+.|...+.+-+- .++......-++..|.++...+++.+|..+|
T Consensus 93 a~~~~~~al-~~~P~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQEL-AANPDN---FELACELAVQYNQVGRDEEALELLWNILK-VNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHH-HHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHH-HhCCCC---HHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 467777776 455653 45677888888888999999888776443 2211112234456688888889999998888
Q ss_pred HHHhc
Q 014453 201 HNVVT 205 (424)
Q Consensus 201 ~~a~~ 205 (424)
..++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 172
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=80.08 E-value=2.9 Score=34.83 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=39.7
Q ss_pred HHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 158 AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 158 ~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.++.+|..- +.-+.|...-.|.||.|.-++..++|.+|.+++..++. -|.+
T Consensus 56 ~GI~lLe~l-~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 56 KGIVLLEEL-LPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHH-TTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 355666552 22222556788999999999999999999999999999 7875
No 173
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=79.48 E-value=6.3 Score=33.67 Aligned_cols=67 Identities=7% Similarity=-0.067 Sum_probs=50.5
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccC-c------------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINL-P------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-~------------~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
+..+...++..++|+.|+....+.+-..+. + ......++..|.++...++|.+|..+|..++. .|.
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 456667888899999999888876532211 1 00136778889999999999999999999998 665
Q ss_pred c
Q 014453 209 S 209 (424)
Q Consensus 209 ~ 209 (424)
.
T Consensus 121 ~ 121 (198)
T 2fbn_A 121 N 121 (198)
T ss_dssp C
T ss_pred c
Confidence 4
No 174
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.40 E-value=4.2 Score=31.62 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=46.8
Q ss_pred HHHHHHHHHccChHHHHhccccccccccC----chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 144 PEFLQLCLLAKCYKAGLSVLEDDIYEINL----PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 144 ~~l~rlcL~~~~y~~Al~il~~~i~~~~~----~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
..+-+.++..++|..|..-+...+-..+. .......+++.|.++..++++.+|..++..++. .|..
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 34556677777887777666554321110 123445667889999999999999999999998 8876
No 175
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=78.52 E-value=6.5 Score=38.29 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCc-hhhHHHHHHHHHHHHhhhcHHHHHHHH
Q 014453 122 VGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP-RDFFLYCYYGGMIFIGQKRFRKALELL 200 (424)
Q Consensus 122 i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~-~~~l~Y~YY~G~I~~~~~~y~~A~~~~ 200 (424)
+..+..|+ .++|.. ...+..+..++...++|+.|+....+.+-.-+.+ .....|+.|++......++|.+|..+|
T Consensus 320 ~~~~~~a~-~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 320 VAHLKKAD-EANDNL---FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp HHHHHHHH-HHCTTT---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHh-hcCCch---hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455554 345543 2346678889999999999998887754311112 223446677777777889999999999
Q ss_pred HHHhc-ccCcc
Q 014453 201 HNVVT-APMSS 210 (424)
Q Consensus 201 ~~a~~-~P~~~ 210 (424)
..|+. .|...
T Consensus 396 ~kal~i~~~~~ 406 (472)
T 4g1t_A 396 IEGVKINQKSR 406 (472)
T ss_dssp HHHHHSCCCCH
T ss_pred HHHHhcCcccH
Confidence 99999 56543
No 176
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=78.19 E-value=4.1 Score=30.86 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=36.8
Q ss_pred HHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 302 ~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
.|+.+-+...++++++||+.++++ +.-++..+..+...|.|.
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 355556677899999999999998 899999999999999885
No 177
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=77.27 E-value=3.4 Score=35.72 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=39.0
Q ss_pred ChHHHHhccccccccccCchhhHHHHHHHHHHHHhh-----------hcHHHHHHHHHHHhc-ccCcc
Q 014453 155 CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ-----------KRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 155 ~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~-----------~~y~~A~~~~~~a~~-~P~~~ 210 (424)
.++.|+..+++.|- ++ | +...-+|..|.+|..+ ++|.+|..+|..|+. .|...
T Consensus 61 ~~~eAi~~le~AL~-ld-P-~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 61 MIQEAITKFEEALL-ID-P-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHHHH-HC-T-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHH-hC-c-CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 36677777777543 22 1 2455567889999877 499999999999999 88763
No 178
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=76.42 E-value=4.1 Score=43.09 Aligned_cols=83 Identities=7% Similarity=-0.147 Sum_probs=41.0
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHH
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFR 194 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~ 194 (424)
.++.-.|+..+..|+. ++|+. ...|..+-.+++..++|+.|+..+++.+---+ +....++..|.++...++|.
T Consensus 446 ~g~~~~A~~~~~~al~-~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P---~~~~~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 446 LGDVAKATRKLDDLAE-RVGWR---WRLVWYRAVAELLTGDYDSATKHFTEVLDTFP---GELAPKLALAATAELAGNTD 518 (681)
T ss_dssp HTCHHHHHHHHHHHHH-HHCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST---TCSHHHHHHHHHHHHHTCCC
T ss_pred cCCHHHHHHHHHHHhc-cCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcCChH
Confidence 3444555666666653 34432 23455666666666777776666655432111 11223334444444444444
Q ss_pred HHHHHHHHHhc
Q 014453 195 KALELLHNVVT 205 (424)
Q Consensus 195 ~A~~~~~~a~~ 205 (424)
+ ..+|+.|+.
T Consensus 519 ~-~~~~~~al~ 528 (681)
T 2pzi_A 519 E-HKFYQTVWS 528 (681)
T ss_dssp T-TCHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 4 444444444
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=76.16 E-value=8.3 Score=37.45 Aligned_cols=67 Identities=6% Similarity=0.045 Sum_probs=51.5
Q ss_pred HHHHHHHHHHccChHHHHhcccccccccc-------------CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEIN-------------LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~-------------~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
+..+...++..++|+.|+....+.+-..+ ........++..|.++..+++|.+|..+|+.|+. .|.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 305 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS 305 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence 55667788889999999888777653110 0224567778889999999999999999999999 665
Q ss_pred c
Q 014453 209 S 209 (424)
Q Consensus 209 ~ 209 (424)
.
T Consensus 306 ~ 306 (370)
T 1ihg_A 306 N 306 (370)
T ss_dssp C
T ss_pred h
Confidence 4
No 180
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=75.94 E-value=7.3 Score=37.06 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCc------------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-cc
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP------------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~------------~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P 207 (424)
..+..+-..+...++|+.|+....+.+-..+.. ......++..|.++...++|.+|..+|..|+. .|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456677788899999999998888765322110 12267788899999999999999999999999 67
Q ss_pred Cc
Q 014453 208 MS 209 (424)
Q Consensus 208 ~~ 209 (424)
..
T Consensus 228 ~~ 229 (336)
T 1p5q_A 228 NN 229 (336)
T ss_dssp TC
T ss_pred Cc
Confidence 64
No 181
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=75.93 E-value=6.4 Score=29.69 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
-.+|+.+||+.+|++ ..-|...|..+-..|.|.-.
T Consensus 23 ~~psv~EIa~~lgvS-~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGLS-IYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEec
Confidence 469999999999995 78899999999999999643
No 182
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=75.58 E-value=2.5 Score=35.74 Aligned_cols=62 Identities=16% Similarity=-0.019 Sum_probs=49.5
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-cc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-AP 207 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P 207 (424)
.......++..++|+.|+..+.+-+-. ..+....++..|.++...++|.+|..+|..++. .|
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p 71 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ 71 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence 556777888999999999888875431 123456677889999999999999999999998 56
No 183
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=75.28 E-value=4.2 Score=31.56 Aligned_cols=44 Identities=7% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 302 ~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
.|+.+-+...++++++||+.++++ +.-++..+..+...|.|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 355556667899999999999998 89999999999999998754
No 184
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=75.23 E-value=10 Score=33.96 Aligned_cols=81 Identities=12% Similarity=0.020 Sum_probs=57.5
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHH----ccChHHHHhccccccccccCchhhHHHHHHHHHHHHh-
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~----~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~- 189 (424)
.+..-.++..++.|+. +.. ...+..+-.++.. .++++.|+..+.+.+- .....-++..|.++..
T Consensus 19 ~~~~~~A~~~~~~a~~---~~~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD---LKE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-----LNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp TTCHHHHHHHHHHHHH---TTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH---CCC---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHhCC
Confidence 3445556777777764 222 2456667777888 8889988888877543 1245566778888888
Q ss_pred ---hhcHHHHHHHHHHHhcc
Q 014453 190 ---QKRFRKALELLHNVVTA 206 (424)
Q Consensus 190 ---~~~y~~A~~~~~~a~~~ 206 (424)
.++|.+|..+|+.++..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~ 107 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDL 107 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 89999999999998874
No 185
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.09 E-value=6.2 Score=33.17 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHH
Q 014453 157 KAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (424)
Q Consensus 157 ~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~i 223 (424)
..++.+|.. ++..+ |...-.|.||.+.-+...|+|.+|.++...++. -|.+. +..++|+.|
T Consensus 60 ~~GI~LLe~-l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~----QA~~Lk~~I 121 (134)
T 3o48_A 60 RLGVKILTD-IYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK----QVGALKSMV 121 (134)
T ss_dssp HHHHHHHHH-HHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHH
T ss_pred HHHHHHHHH-HHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHH
Confidence 456666644 33212 556788999999999999999999999999998 78763 224555544
No 186
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=74.77 E-value=11 Score=28.98 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=37.8
Q ss_pred hHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 156 YKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 156 y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
...|..++.+-+- .+ .+..+=.++.|.+++..++|.+|..+++.++. .|.
T Consensus 25 ~~~A~~~l~~AL~-~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 25 TDEVSLLLEQALQ-LE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHH-HC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677777766432 22 13445556779999999999999999999998 777
No 187
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=74.42 E-value=27 Score=28.14 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=57.8
Q ss_pred HHHHhhh--hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHHHHHHHHHH
Q 014453 304 QRLTQTY--LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMS 381 (424)
Q Consensus 304 ~~l~~~Y--s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~~i~~~~~ 381 (424)
.+|...| ...+..+++..++++ ..++..++..+...|.+.. |++ ++.. ..+...++.+.+.....
T Consensus 10 ~~i~~~~~~~p~~~~~la~~~~~~-~~~~~~~l~~l~~~G~l~~-i~~--~~~~---------~~~~~~~~~~~l~~~~~ 76 (121)
T 2pjp_A 10 QKAEPLFGDEPWWVRDLAKETGTD-EQAMRLTLRQAAQQGIITA-IVK--DRYY---------RNDRIVEFANMIRDLDQ 76 (121)
T ss_dssp HHHGGGCSSSCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEE-EET--TEEE---------EHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEE-ecC--CceE---------CHHHHHHHHHHHHHHHH
Confidence 3444444 356888999999998 8999999999999999974 542 2222 23444444555444433
Q ss_pred HHH--HHHHHhHHhhcCHHHHHH
Q 014453 382 LSK--KLTAMDELISCDPLYLGK 402 (424)
Q Consensus 382 L~~--~~~~~d~~l~~~~~yi~~ 402 (424)
=+. .+.++.+.+++|+.|.--
T Consensus 77 ~~~~it~ae~Rd~lg~sRK~ai~ 99 (121)
T 2pjp_A 77 ECGSTCAADFRDRLGVGRKLAIQ 99 (121)
T ss_dssp HHSSEEHHHHHHHHTSCHHHHHH
T ss_pred HCCCccHHHHHHHHCCcHHHHHH
Confidence 343 577788889999975543
No 188
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=73.93 E-value=6.1 Score=29.47 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=31.8
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
..++.++||+.+|++ ...+...+..|...|.|...
T Consensus 13 ~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe
Confidence 569999999999997 88999999999999999753
No 189
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=73.08 E-value=21 Score=33.44 Aligned_cols=96 Identities=8% Similarity=-0.045 Sum_probs=65.1
Q ss_pred HhhccccchHHHHHHHHhhCCCCCC--cchHHHHHHHHHHHccChHHHHhcccccccccc---Cc--hhhHHHHHHHHHH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEH--LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEIN---LP--RDFFLYCYYGGMI 186 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~--lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~---~~--~~~l~Y~YY~G~I 186 (424)
..+..-.++..+..|+......+.. ....+..+..++...++|+.|...+.+.+-... .+ ......++..|.+
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 65 CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHH
Confidence 4455566777777777544333222 123356677788899999999888877542111 11 2345556678999
Q ss_pred HHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 187 FIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 187 ~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
+...++|.+|..++..++. .|..
T Consensus 145 ~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999998 6653
No 190
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.02 E-value=4.9 Score=35.10 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=49.6
Q ss_pred HHHHHHHHHHccChHHHHhcccccc--cccc----CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDI--YEIN----LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i--~~~~----~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
--..++-.+..+.|+.|..+-+.-+ .+-+ .|....+-++|-|-.++..++|.+|...|.+|+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4577899999999999976655522 2111 1566777888999999999999999999999986
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=72.56 E-value=8.6 Score=29.13 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCcc
Q 014453 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 177 l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~ 210 (424)
...+|..|.++...++|.+|..+|+.++. .|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45677889999999999999999999998 77754
No 192
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=71.87 E-value=30 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=34.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
...++..+||+.++++ ...+-..+..|...|.|...-+.
T Consensus 32 ~~~~s~~ela~~l~is-~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEeec
Confidence 4579999999999998 88999999999999999876654
No 193
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=71.78 E-value=5.8 Score=37.62 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhccc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAP 207 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P 207 (424)
+-++..+..+....+.|+.|...++..+.. .|.+. -.|-.|.+++..++|.+|..+|+.+...|
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~~~ 165 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGKWP 165 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGGCS
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhccC
Confidence 456778888999999999999999886652 13344 66889999999999999999999887765
No 194
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.10 E-value=9.1 Score=31.84 Aligned_cols=47 Identities=21% Similarity=0.251 Sum_probs=37.9
Q ss_pred HHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
|..+-....++|.++||+.+|++ ...+...+.+|...|.|.. .+|+.
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEecccChh
Confidence 33333445789999999999997 8999999999999999974 46654
No 195
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=70.38 E-value=5.8 Score=36.70 Aligned_cols=79 Identities=11% Similarity=0.035 Sum_probs=59.7
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 014453 124 PMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (424)
Q Consensus 124 ~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a 203 (424)
.+...+...-|+. ...+..+...++..++++.|+..+.+-+-. + | +....++..|.++...+++.+|...|..+
T Consensus 104 ~l~~~l~~~lp~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~-P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 104 AIRALLDXVLPRE---EELXAQQAMQLMQESNYTDALPLLXDAWQL-S-N-QNGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHSCCH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCc---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh-C-C-cchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3555555555543 345778888999999999999988875432 1 2 24566778899999999999999999999
Q ss_pred hc-ccC
Q 014453 204 VT-APM 208 (424)
Q Consensus 204 ~~-~P~ 208 (424)
+. .|.
T Consensus 178 ~~~~p~ 183 (287)
T 3qou_A 178 PLQDQD 183 (287)
T ss_dssp CGGGCS
T ss_pred chhhcc
Confidence 88 673
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=69.07 E-value=3.7 Score=30.87 Aligned_cols=84 Identities=6% Similarity=-0.159 Sum_probs=58.4
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccC---chhhHHHHHHHHHHHHhh
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL---PRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~---~~~~l~Y~YY~G~I~~~~ 190 (424)
..+..-.++..+..|+. ++|+. ...+..+..++...++|+.|+..+.+.+--.+. +......++..|.++...
T Consensus 16 ~~~~~~~A~~~~~~al~-~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 91 (111)
T 2l6j_A 16 KQGLYREAVHCYDQLIT-AQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV 91 (111)
T ss_dssp TTTCHHHHHHHHHHHHH-HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh-cCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence 45556667888888874 45543 456788888999999999999998886532221 122366677888888888
Q ss_pred hcHHHHHHHHH
Q 014453 191 KRFRKALELLH 201 (424)
Q Consensus 191 ~~y~~A~~~~~ 201 (424)
+++.+|...|.
T Consensus 92 ~~~~~a~~~~~ 102 (111)
T 2l6j_A 92 GSVQIPVVEVD 102 (111)
T ss_dssp HCCCCCSSSSS
T ss_pred HhHhhhHhHHH
Confidence 87777655443
No 197
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.03 E-value=10 Score=32.14 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=37.4
Q ss_pred HHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
|..+-....++|.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALS-PSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEeeecccCChH
Confidence 33333445689999999999997 8899999999999999964 55654
No 198
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.37 E-value=9.9 Score=31.83 Aligned_cols=47 Identities=17% Similarity=0.205 Sum_probs=38.0
Q ss_pred HHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
|..+-+.-.++|.++||+.+|++ ...+...+.+|...|.|.. .+|+.
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 33333344789999999999997 8999999999999999975 56765
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=68.15 E-value=6.1 Score=28.39 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 175 DFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 175 ~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.....++..|.++...++|.+|..+|..++. .|..
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3556778889999999999999999999998 6654
No 200
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=67.90 E-value=10 Score=31.60 Aligned_cols=45 Identities=9% Similarity=0.145 Sum_probs=36.6
Q ss_pred HHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 305 ~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
.+-+.-.++|.++||+.+|++ ...+...+.+|...|.|.. .+|+.
T Consensus 16 ~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 16 KILSENSRLTYRELADILNTT-RQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHCTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 333345789999999999997 8899999999999999964 35654
No 201
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=67.90 E-value=1e+02 Score=30.62 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=60.6
Q ss_pred cchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHH
Q 014453 120 RGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALEL 199 (424)
Q Consensus 120 ~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~ 199 (424)
.++..+..|+..+.|+. ..+|..+..+....++++.|..+.++-+- .+ |.+....+..-|.++...+++.+|...
T Consensus 304 ~A~~~~~~Al~~~~p~~---~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~ 378 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN---MLLYFAYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMI 378 (530)
T ss_dssp HHHHHHHHHTTTTCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SS-SSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-cc-ccCchHHHHHHHHHHHHhcCHHHHHHH
Confidence 56777888875455543 56788888999999999999988888543 22 222212223335666778999999999
Q ss_pred HHHHhcccCc
Q 014453 200 LHNVVTAPMS 209 (424)
Q Consensus 200 ~~~a~~~P~~ 209 (424)
|..|+..|..
T Consensus 379 ~~~Al~~~~~ 388 (530)
T 2ooe_A 379 FKKAREDART 388 (530)
T ss_dssp HHHHHTCTTC
T ss_pred HHHHHhccCC
Confidence 9999995543
No 202
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=67.56 E-value=12 Score=31.79 Aligned_cols=48 Identities=29% Similarity=0.358 Sum_probs=39.2
Q ss_pred HHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE---EEEecC
Q 014453 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF---ATINQK 350 (424)
Q Consensus 302 ~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~---A~Id~~ 350 (424)
.|..+-+.-.++|.++||+.+|++ ...+...+.+|..+|.|. |.+|+.
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 344444455789999999999998 899999999999999986 567765
No 203
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=66.94 E-value=9.7 Score=37.00 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=55.2
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHH----HHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhh
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEF----LQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQ 190 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l----~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~ 190 (424)
.+....++..++.|+ .++|+.. ..+..+ ..+....+.++.|.+.+.+.+-.-+ +....++..|.++...
T Consensus 188 ~~~~~~al~~~~~al-~l~p~~~---~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~~ 260 (472)
T 4g1t_A 188 WPPSQNAIDPLRQAI-RLNPDNQ---YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRRK 260 (472)
T ss_dssp SCCCCCTHHHHHHHH-HHCSSCH---HHHHHHHHHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHh-hcCCcch---HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHc
Confidence 344566788888887 4566542 122222 2222334677888888776543111 2344566789999999
Q ss_pred hcHHHHHHHHHHHhc-ccCcc
Q 014453 191 KRFRKALELLHNVVT-APMSS 210 (424)
Q Consensus 191 ~~y~~A~~~~~~a~~-~P~~~ 210 (424)
++|.+|..+|..|+. .|...
T Consensus 261 ~~~~~A~~~~~~al~~~p~~~ 281 (472)
T 4g1t_A 261 DEPDKAIELLKKALEYIPNNA 281 (472)
T ss_dssp TCHHHHHHHHHHHHHHSTTCH
T ss_pred CchHHHHHHHHHHHHhCCChH
Confidence 999999999999998 78753
No 204
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=66.72 E-value=9.1 Score=32.55 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=37.1
Q ss_pred chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHH
Q 014453 173 PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (424)
Q Consensus 173 ~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~i 223 (424)
|...-.|.||.+.-+...++|.+|.++.+.+++ -|.+. +..++|.+|
T Consensus 73 ~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~----QA~~Lk~~I 120 (144)
T 1y8m_A 73 ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK----QVGALKSMV 120 (144)
T ss_dssp CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----HHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----HHHHHHHHH
Confidence 345667899999999999999999999999999 77752 234555554
No 205
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=66.53 E-value=12 Score=32.28 Aligned_cols=42 Identities=7% Similarity=0.244 Sum_probs=35.6
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
+.-.++|.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 334689999999999998 8899999999999999964 56654
No 206
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=66.41 E-value=5.8 Score=38.28 Aligned_cols=46 Identities=11% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh----cccHHHHHHHhCCCCHHHHHHHHH
Q 014453 290 LVKQVVSSMYKRNIQRLTQTYL----TLSLQDIANTVQLNSSKEAEMHVL 335 (424)
Q Consensus 290 Lv~~l~~~v~r~~I~~l~~~Ys----~Isl~~Ia~~l~l~~~~eaE~~v~ 335 (424)
++......++...++.++++|. +++++++++.|+.++++|++..+.
T Consensus 198 lle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 198 FLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp HHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 4445567888889999999995 899999999999998899887774
No 207
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=66.16 E-value=14 Score=36.82 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccC------------chhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccC
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINL------------PRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APM 208 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~------------~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~ 208 (424)
.+...-..+...++|..|+....+.+-..+. .......++..|.++..+++|.+|..+|..|+. .|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4566777888899999999888875432111 012367788899999999999999999999998 676
Q ss_pred c
Q 014453 209 S 209 (424)
Q Consensus 209 ~ 209 (424)
.
T Consensus 350 ~ 350 (457)
T 1kt0_A 350 N 350 (457)
T ss_dssp C
T ss_pred c
Confidence 4
No 208
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=65.65 E-value=8 Score=29.65 Aligned_cols=33 Identities=3% Similarity=0.303 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
++..+||+.||++ ...+...|.+|..+|.|...
T Consensus 31 ~sa~eLAk~LgiS-k~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 31 ATAAQLTRQLNME-KREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHHTSSEEC
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeC
Confidence 9999999999998 89999999999999999763
No 209
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=64.27 E-value=18 Score=32.25 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=61.7
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHH----ccChHHHHhccccccccccCchhhHHHHHHHHHHHHh-
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~----~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~- 189 (424)
.++.-.++..++.|+.. . ....+..+-.++.. .++++.|+..+.+.+-. ....-++..|.++..
T Consensus 55 ~~~~~~A~~~~~~a~~~-~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDL-N-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-----KYAEGCASLGGIYHDG 123 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-----CCccHHHHHHHHHHcC
Confidence 44456677778888643 1 24567778888888 99999999988876531 245566788899998
Q ss_pred ---hhcHHHHHHHHHHHhcc
Q 014453 190 ---QKRFRKALELLHNVVTA 206 (424)
Q Consensus 190 ---~~~y~~A~~~~~~a~~~ 206 (424)
.+++++|..+|+.++..
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHhc
Confidence 99999999999999984
No 210
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=63.59 E-value=27 Score=28.18 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=42.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHH
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHID 373 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~ 373 (424)
..++.++||+.++++ ..-++.++..+...|.|...-.. .|-.....+++..+-.+....++
T Consensus 25 ~~~s~~ela~~~~i~-~~~v~~il~~L~~~Glv~~~~g~-~ggy~L~~~~~~itl~di~~~~e 85 (129)
T 2y75_A 25 GPTSLKSIAQTNNLS-EHYLEQLVSPLRNAGLVKSIRGA-YGGYVLGSEPDAITAGDIIRVLE 85 (129)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGGCBHHHHHHHHH
T ss_pred CcCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEecCCC-CCceEeCCCHHHCcHHHHHHHHc
Confidence 469999999999998 89999999999999998754322 34444555555444444444444
No 211
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=63.57 E-value=14 Score=37.71 Aligned_cols=88 Identities=7% Similarity=-0.040 Sum_probs=59.2
Q ss_pred cccchHHHHHHHHhhC----CC-CCCcchHHHHHHHHHHHccChHHHHhccccccccc----c-CchhhHHHHHHHHHHH
Q 014453 118 PIRGVGPMLTAIRKIQ----SS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----N-LPRDFFLYCYYGGMIF 187 (424)
Q Consensus 118 ~~~~i~~L~~A~~rl~----~~-~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~----~-~~~~~l~Y~YY~G~I~ 187 (424)
.-.++..++.++.... ++ +.++ .....+..++...+.|+.|+++..+.+--. . ..-+.+.-++-.|.+|
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~ 403 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVL-RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTN 403 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3445555666654332 22 2222 334467778888999999988877753211 1 1235677778889999
Q ss_pred HhhhcHHHHHHHHHHHhcc
Q 014453 188 IGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 188 ~~~~~y~~A~~~~~~a~~~ 206 (424)
..+++|.+|..+|+.|+..
T Consensus 404 ~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 404 WHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999873
No 212
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=63.28 E-value=53 Score=32.67 Aligned_cols=91 Identities=10% Similarity=0.008 Sum_probs=60.2
Q ss_pred HhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcH
Q 014453 114 LLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRF 193 (424)
Q Consensus 114 ~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y 193 (424)
..++.-.+...+..|+. +.|.. .+..+..+.++....+.++.|..++.+.+-. + |...-.|.-.+.+.+...+++
T Consensus 333 ~~g~~~~A~~~~~~al~-~~p~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-~-~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLA-IEDID--PTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HTTCHHHHHHHHHHHHH-SSSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-T-TCCTHHHHHHHHHHHHHTCCH
T ss_pred hcCCHHHHHHHHHHHhC-ccccC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-c-CCchHHHHHHHHHHHHHcCCh
Confidence 34455556667777764 44432 2457888888888899999999988886532 1 222222222222334468999
Q ss_pred HHHHHHHHHHhc-ccCc
Q 014453 194 RKALELLHNVVT-APMS 209 (424)
Q Consensus 194 ~~A~~~~~~a~~-~P~~ 209 (424)
.+|...|+.++. .|..
T Consensus 408 ~~A~~~~e~al~~~p~~ 424 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDI 424 (530)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHCCCC
Confidence 999999999998 7754
No 213
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.16 E-value=16 Score=30.38 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=35.3
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
..-.+++.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 17 AADGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 344789999999999998 8899999999999999954 45553
No 214
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=62.74 E-value=46 Score=24.90 Aligned_cols=38 Identities=11% Similarity=0.157 Sum_probs=33.9
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
...++.++||+.++++ ..-+-..+..|...|.|...-+
T Consensus 28 ~~~~~~~ela~~l~is-~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 4679999999999998 7889999999999999987663
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=62.55 E-value=7.2 Score=39.15 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=58.6
Q ss_pred cchHHHHHHHHhh----CCC-CCCcchHHHHHHHHHHHccChHHHHhccccccccc----c-CchhhHHHHHHHHHHHHh
Q 014453 120 RGVGPMLTAIRKI----QSS-TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEI----N-LPRDFFLYCYYGGMIFIG 189 (424)
Q Consensus 120 ~~i~~L~~A~~rl----~~~-~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~----~-~~~~~l~Y~YY~G~I~~~ 189 (424)
.++..++.++... -|+ +.++ .....+..++...+.|+.|+++..+.+--. . ..-+.+.-++-.|.+|..
T Consensus 316 eA~~~~~~~L~i~~~~lg~~Hp~~a-~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 394 (433)
T 3qww_A 316 ELLEICELSQEKMSSVFEDSNVYML-HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG 394 (433)
T ss_dssp HHHHHHHHHHHHHTTTBCTTSHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCccChhchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh
Confidence 3455566665432 222 2222 334456778888999999999888753211 1 123567777788999999
Q ss_pred hhcHHHHHHHHHHHhcc
Q 014453 190 QKRFRKALELLHNVVTA 206 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~~ 206 (424)
+++|.+|..+|+.|+..
T Consensus 395 qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 395 LENKAAGEKALKKAIAI 411 (433)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999873
No 216
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=60.56 E-value=31 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=33.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
..++..+||+.+|++ ..-+-..+..|...|.|...-+
T Consensus 37 ~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 37 PGTSAGELTRITGLS-ASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp CSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 469999999999997 7889999999999999987654
No 217
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=60.25 E-value=18 Score=27.52 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 177 FLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 177 l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
...++..|.++...++|.+|..+|..++. .|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 45677889999999999999999999998 6654
No 218
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=58.87 E-value=40 Score=28.08 Aligned_cols=62 Identities=19% Similarity=0.213 Sum_probs=47.6
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHHHH
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSS 375 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~~ 375 (424)
.++.++||+.++++ ..-+++++..+...|.|..+ ...+|-.....+++..+-.+....++..
T Consensus 28 ~~s~~~IA~~~~i~-~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar~p~~Itl~dV~~aveg~ 89 (143)
T 3t8r_A 28 CISLKSIAEENNLS-DLYLEQLVGPLRNAGLIRSV-RGAKGGYQLRVPAEEISAGDIIRLLEGP 89 (143)
T ss_dssp CEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEC-SSSSSEEEESSCGGGCBHHHHHHHHHCC
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCEEEec-CCCCCCeeecCCcccCCHHHHHHHhCCC
Confidence 59999999999998 89999999999999998864 3234556677676666555666666543
No 219
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=58.70 E-value=32 Score=29.44 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=45.2
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHH
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHID 373 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~ 373 (424)
.++.++||+.++++ ..-+++++..+...|.|..+=- .+|-.....+++..+=.+....++
T Consensus 44 ~~s~~eIA~~~~i~-~~~l~kil~~L~~aGlv~s~rG-~~GGy~Lar~p~eItL~dVi~avE 103 (159)
T 3lwf_A 44 PISLRSIAQDKNLS-EHYLEQLIGPLRNAGIVKSIRG-AHGGYVLNGDPEKITAGDIIRTLE 103 (159)
T ss_dssp CBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECS-TTCEEEECSCTTTCBHHHHHHHHS
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEEEecC-CCCceEecCCHHHCCHHHHHHHHc
Confidence 59999999999998 8999999999999999986633 345555666666555445544444
No 220
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=58.27 E-value=69 Score=25.55 Aligned_cols=40 Identities=13% Similarity=0.221 Sum_probs=35.3
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.+|++ ..-+-.+|..|...|.|.-.-+..+
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~~L~~~G~v~r~~~~~d 79 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLKKLEELGFVRKVWIKGE 79 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecCCC
Confidence 579999999999998 7889999999999999987766544
No 221
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=57.94 E-value=12 Score=37.73 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=46.0
Q ss_pred HHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 149 LCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 149 lcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
.+...++|+.|+....+.+-. + .+....++..|.++..+++|.+|..+|+.|+. .|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-N--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHh-C--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 445678999998888876532 1 22467778899999999999999999999999 6654
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=57.57 E-value=8.3 Score=38.56 Aligned_cols=64 Identities=11% Similarity=-0.026 Sum_probs=48.6
Q ss_pred HHHHHHHHHHccChHHHHhccccccccc----c-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEI----N-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~----~-~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~ 206 (424)
...+..++...+.|+.|+++..+.+--. . ..-+.+.-++-.|.+|..+++|++|..+|+.|+..
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3456667888899999998877743211 1 12356777788899999999999999999999873
No 223
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.38 E-value=80 Score=26.01 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=36.4
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..++
T Consensus 58 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIK-PQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSC-GGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 3579999999999998 78889999999999999988776543
No 224
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=56.94 E-value=79 Score=25.88 Aligned_cols=40 Identities=8% Similarity=0.057 Sum_probs=33.9
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~ 103 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALDGLQADGLVRREVDSD 103 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC--
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEecCCCC
Confidence 3579999999999998 788999999999999998766543
No 225
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=56.55 E-value=19 Score=30.26 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=45.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHHH
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDS 374 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~ 374 (424)
..++.++||+.++++ ..-+++++..+...|.|...-- .|-.....+++..+-.+....++.
T Consensus 29 ~~~~~~~iA~~~~i~-~~~l~kil~~L~~~Glv~s~rG--~GGy~L~~~p~~Itl~dVi~a~e~ 89 (149)
T 1ylf_A 29 SLCTSDYMAESVNTN-PVVIRKIMSYLKQAGFVYVNRG--PGGAGLLKDLHEITLLDVYHAVNV 89 (149)
T ss_dssp GGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC-----CCEEESSCGGGCBHHHHHHHHCC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEccC--CCceEeCCChhhCcHHHHHHHHcc
Confidence 368999999999998 8999999999999999876433 455566666666555555555544
No 226
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=56.31 E-value=20 Score=27.12 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhcccHHHHHHHhCCCCHH-HHHHHHHHhHHcCceEE
Q 014453 300 KRNIQRLTQTYLTLSLQDIANTVQLNSSK-EAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 300 r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~-eaE~~v~~mI~~G~I~A 345 (424)
+..|..+-+.-...+..+||+.||++ .. .|...+..|-.+|.|..
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lgit-~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcCCC-cHHHHHHHHHHHHHCCCEEe
Confidence 44455556666789999999999998 67 99999999999999983
No 227
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=56.27 E-value=15 Score=30.66 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=35.3
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
..-.++|.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 17 QNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 344789999999999997 8899999999999999854 46653
No 228
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=55.92 E-value=16 Score=31.45 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=35.5
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
+...++|.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 334789999999999997 8899999999999999854 46654
No 229
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=54.75 E-value=59 Score=24.55 Aligned_cols=30 Identities=13% Similarity=0.086 Sum_probs=28.6
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCce
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEI 343 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I 343 (424)
++.++||+.++++ ..-+-.+|..|...|.|
T Consensus 31 ~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNSP-HSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSSC-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCcCc
Confidence 9999999999998 78899999999999999
No 230
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=54.67 E-value=37 Score=27.11 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=35.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 43 ~~~~~~~ela~~l~is-~~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 43 DAPLHQLALQERLQID-RAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCC
Confidence 4579999999999998 788999999999999998777643
No 231
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=54.59 E-value=66 Score=24.18 Aligned_cols=45 Identities=13% Similarity=0.271 Sum_probs=36.3
Q ss_pred HHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 304 QRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 304 ~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
..+...-..++.++||+.+|++ ..-+-.++..|...|.|.-.-+.
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is-~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLS-KTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC-
T ss_pred HHHHHcCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeccc
Confidence 3333335679999999999998 78899999999999999876553
No 232
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=53.41 E-value=18 Score=29.98 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=37.7
Q ss_pred HHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE---EEecC
Q 014453 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA---TINQK 350 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A---~Id~~ 350 (424)
|...-..-.+++.++||+.+|++ ...+-..+.+|...|.|.. .+|+.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 33333445689999999999998 8999999999999999975 46654
No 233
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=52.99 E-value=16 Score=30.46 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=48.0
Q ss_pred HHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHH
Q 014453 304 QRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHID 373 (424)
Q Consensus 304 ~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~ 373 (424)
.-|+.-... +.++||+.++++ ..-+++++.++...|.|..+=- .|=.....+++..+=.+....++
T Consensus 16 ~~La~~~~~-s~~~IA~~~~i~-~~~l~kIl~~L~~aGlv~s~rG--~GGy~Lar~p~~Itl~dVi~ave 81 (145)
T 1xd7_A 16 SLISMDEKT-SSEIIADSVNTN-PVVVRRMISLLKKADILTSRAG--VPGASLKKDPADISLLEVYRAVQ 81 (145)
T ss_dssp HHHHTCSCC-CHHHHHHHHTSC-HHHHHHHHHHHHHTTSEECCSS--SSSCEESSCGGGCBHHHHHHHHC
T ss_pred HHHHhCCCC-CHHHHHHHHCcC-HHHHHHHHHHHHHCCceEeecC--CCCceecCCHHHCCHHHHHHHHc
Confidence 334444445 999999999998 8999999999999999976533 44456666666665555555554
No 234
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=52.56 E-value=72 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=33.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
..++.++||+.++++ ...+-.+|..|...|.|.-.-|..
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~ 88 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVDVLLRKELIVREISTE 88 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHHHHHHCCCeeccCCCc
Confidence 689999999999998 788999999999999998766543
No 235
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.35 E-value=35 Score=33.84 Aligned_cols=72 Identities=6% Similarity=-0.230 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcccCccc
Q 014453 140 TTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPMSSI 211 (424)
Q Consensus 140 T~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P~~~~ 211 (424)
.-.|..+....+..|+|+.|.+.+.+-.-.-..+.+.+..+...-++++..+||..|..++..|-.......
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~ 202 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG 202 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC
Confidence 346889999999999999999998874221122467888888888888999999999999999977544333
No 236
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.24 E-value=86 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=36.1
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 48 ~~~~t~~ela~~l~~s-~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (142)
T 2fbi_A 48 QGEMESYQLANQACIL-RPSMTGVLARLERDGIVRRWKAPKDQ 89 (142)
T ss_dssp HCSEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 3579999999999998 78899999999999999877775543
No 237
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=52.07 E-value=33 Score=32.75 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=63.1
Q ss_pred HHHhhccccchHHHHHHHHhhCC-----CCCCcchHHHHHHHHHHHccChHHHHhccccccccccC-chhhHHHHHHHHH
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQS-----STEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINL-PRDFFLYCYYGGM 185 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~-----~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-~~~~l~Y~YY~G~ 185 (424)
....+.+-.+...++.. .+.+| +.+.++-+-...+.++.-.+.|..|..+++.-.-..+. ....+.| .
T Consensus 146 ~L~~~r~d~A~k~l~~~-~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl---n-- 219 (310)
T 3mv2_B 146 ALLNNNVSTASTIFDNY-TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL---N-- 219 (310)
T ss_dssp HHHTTCHHHHHHHHHHH-HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH---H--
T ss_pred HHHCCCHHHHHHHHHHH-HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH---H--
Confidence 33455565666666654 45566 12333322222223333334899998888774322221 0122333 2
Q ss_pred HHHhhhcHHHHHHHHHHHhc-ccCc--c--ccHHHHHHHHHHHHHHHHhcCC
Q 014453 186 IFIGQKRFRKALELLHNVVT-APMS--S--INAIAVEAYKKYILVSLIHHGQ 232 (424)
Q Consensus 186 I~~~~~~y~~A~~~~~~a~~-~P~~--~--~s~i~~ea~Kk~iLv~LL~~G~ 232 (424)
+++.+++|.+|...++.+.. .|.. . +.+---+++-..|.++..+ |+
T Consensus 220 ~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~l-gk 270 (310)
T 3mv2_B 220 LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQ-GL 270 (310)
T ss_dssp HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHT-TC
T ss_pred HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHh-Ch
Confidence 79999999999999998777 4441 0 0000125666777778775 77
No 238
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=51.82 E-value=86 Score=24.70 Aligned_cols=41 Identities=12% Similarity=0.153 Sum_probs=35.7
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
..++.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~d~ 91 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVERLDKRGLIQRSADPDDG 91 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCC
Confidence 479999999999998 78899999999999999887765443
No 239
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=51.24 E-value=20 Score=29.82 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=31.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
.-+|.++||+++|++ +.++...+.+++..|.|.=
T Consensus 50 ~~ps~~~LA~~~~~s-~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 50 YFPTPNQLQEGMSIS-VEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp CSCCHHHHHTTSSSC-HHHHHHHHHHHHHHTSCEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE
Confidence 458999999999998 8999999999999999975
No 240
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=50.33 E-value=1.1e+02 Score=25.41 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=35.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ...+-.+|..|...|.|.-..+..+
T Consensus 57 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~D 97 (168)
T 2nyx_A 57 HGPINLATLATLLGVQ-PSATGRMVDRLVGAELIDRLPHPTS 97 (168)
T ss_dssp HCSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEeccCCCC
Confidence 3579999999999998 7889999999999999988777543
No 241
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=50.29 E-value=79 Score=23.78 Aligned_cols=46 Identities=9% Similarity=0.057 Sum_probs=36.5
Q ss_pred hhcccHHHH----HHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 310 YLTLSLQDI----ANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 310 Ys~Isl~~I----a~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
...++..+| |+.++++ ..-+-..|..|...|.|.-..+.....+..
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~~Le~~gli~r~~~~r~~~~~L 69 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKKFLIQEGFVKERQERGEKRLYL 69 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCEEEEecCCceEEEE
Confidence 356899999 8888997 788999999999999998877763333433
No 242
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=49.94 E-value=92 Score=24.49 Aligned_cols=42 Identities=7% Similarity=0.095 Sum_probs=36.5
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..++
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 3679999999999998 78899999999999999987776544
No 243
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=49.02 E-value=99 Score=25.25 Aligned_cols=40 Identities=10% Similarity=0.368 Sum_probs=34.6
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 102 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQKLVDEGYVFRQRDEKD 102 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC--
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCC
Confidence 679999999999998 7889999999999999988776543
No 244
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=48.86 E-value=25 Score=26.90 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHhhCCC---CCCcchHHHHHHHHHHHccChHHHHhcccccc
Q 014453 105 CKRYKDQVLLLEAPIRGVGPMLTAIRKIQSS---TEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDI 167 (424)
Q Consensus 105 ~~~~~~~~~~~~~~~~~i~~L~~A~~rl~~~---~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i 167 (424)
|...+..+.+.+..-.++.-++.|+.+.+++ +.....++..+...+...|+++.|+....+.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4455566667777788888999999888654 23455678888889999999999998887754
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=48.46 E-value=29 Score=34.36 Aligned_cols=67 Identities=13% Similarity=0.111 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHccChHHHHhcccccccc---ccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcccC
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVTAPM 208 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~---~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~P~ 208 (424)
+-.-+..+.+..++|..|++++.+-.-+ .+.+...+.-+-....+|...+|+.++...++.|-+++.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ 170 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTAN 170 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 4557889999999999999998875433 333567888888999999999999999999999987554
No 246
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.30 E-value=80 Score=25.12 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=35.6
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
....++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~~L~~~glv~r~~~~~ 89 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLDGLESQGLVRRLAVAE 89 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCBT
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCeeecCCCc
Confidence 45689999999999998 788999999999999998766543
No 247
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=48.28 E-value=54 Score=26.06 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=34.4
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
.++.++||+.++++ ...+-..|.+|...|.|.-.-+..+
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~d 88 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQRMEIKKLLYRKVSGKD 88 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CcCHHHHHHHHCCC-cchHHHHHHHHHHCCCEEeeCCCcC
Confidence 69999999999998 7889999999999999987766543
No 248
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=47.95 E-value=25 Score=28.65 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=31.9
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
.-.++|.++||+.+|++ ...+-..+..|...|.|..
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEec
Confidence 34689999999999997 8889999999999999964
No 249
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=47.91 E-value=26 Score=28.35 Aligned_cols=41 Identities=12% Similarity=0.276 Sum_probs=31.8
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
... ++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 49 ~~~-~t~~eLa~~l~~s-~~tvs~~l~~L~~~Glv~r~~~~~d 89 (146)
T 3tgn_A 49 EES-LTNSELARRLNVS-QAAVTKAIKSLVKEGMLETSKDSKD 89 (146)
T ss_dssp TCC-CCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC------
T ss_pred hCC-CCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeEeccCCCC
Confidence 345 9999999999998 7889999999999999987776543
No 250
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=47.61 E-value=67 Score=25.71 Aligned_cols=41 Identities=15% Similarity=0.110 Sum_probs=29.1
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 49 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~D 89 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRD-KALITRKIRELEGRNLVRRERNPSD 89 (142)
T ss_dssp TTTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC------
T ss_pred CCCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCC
Confidence 3479999999999998 6788889999999999987776544
No 251
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=47.06 E-value=1e+02 Score=24.29 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.4
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
.++.++||+.++++ ...+-.+|.+|...|.|.-.-+..+
T Consensus 47 ~~t~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~D 85 (139)
T 3eco_A 47 GLTQNDIAKALQRT-GPTVSNLLRNLERKKLIYRYVDAQD 85 (139)
T ss_dssp CEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred CcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCCCC
Confidence 79999999999998 7889999999999999987776543
No 252
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=47.06 E-value=19 Score=34.07 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=46.2
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccCchhh----------------HHHHHHHHHHHHhhhcHHHHHHHHHHHhc-
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDF----------------FLYCYYGGMIFIGQKRFRKALELLHNVVT- 205 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~----------------l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~- 205 (424)
+...-..+...++|..|+....+.+-.. |.+. ...++..|.++..+++|.+|..+|..++.
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4445556667788888888777644211 1111 13667889999999999999999999998
Q ss_pred ccCc
Q 014453 206 APMS 209 (424)
Q Consensus 206 ~P~~ 209 (424)
.|..
T Consensus 260 ~p~~ 263 (338)
T 2if4_A 260 EEKN 263 (338)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6754
No 253
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=46.84 E-value=29 Score=29.68 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=43.6
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHH
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHID 373 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~ 373 (424)
..+|.++||+.++++ ..-+++++..+...|.|..+ -...|=.....+++..+-.+....++
T Consensus 27 ~~~s~~~IA~~~~is-~~~l~kil~~L~~aGlv~s~-rG~~GGy~Lar~p~~Itl~dIi~ave 87 (162)
T 3k69_A 27 SKVASRELAQSLHLN-PVMIRNILSVLHKHGYLTGT-VGKNGGYQLDLALADMNLGDLYDLTI 87 (162)
T ss_dssp SCBCHHHHHHHHTSC-GGGTHHHHHHHHHTTSSEEE-CSTTCEEECCSCGGGSBHHHHHHHHS
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEee-cCCCCCeEecCChhhCcHHHHHHHHc
Confidence 359999999999998 89999999999999999754 33344455555555444334444443
No 254
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=46.83 E-value=92 Score=25.04 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=34.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 52 ~~~~t~~ela~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~ 91 (152)
T 3bj6_A 52 TPGATAPQLGAALQMK-RQYISRILQEVQRAGLIERRTNPE 91 (152)
T ss_dssp STTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCSS
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeeecCCcc
Confidence 3579999999999998 788999999999999998766543
No 255
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=46.24 E-value=1.1e+02 Score=24.41 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=35.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 54 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~d 94 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLA-CSTTTDLVDRMERNGLVARVRDEHD 94 (150)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC-
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCC
Confidence 3579999999999998 7889999999999999987766543
No 256
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.00 E-value=1.1e+02 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=34.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..+
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d 85 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQRMKRDGYVMTEKNPND 85 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHHHHHHTTSEEEEECSSC
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCeeeccCCCC
Confidence 4579999999999998 6788889999999999987766543
No 257
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.93 E-value=43 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=29.9
Q ss_pred cccHHHHHHHhCCCCHHH-HHHHHHHhHHcCceE
Q 014453 312 TLSLQDIANTVQLNSSKE-AEMHVLQMIQDGEIF 344 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~e-aE~~v~~mI~~G~I~ 344 (424)
.++.++||+.++++ ..- +-.+|.+|...|.|.
T Consensus 30 ~~t~~eLa~~l~is-~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVS-EKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCC-HHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCC-chHHHHHHHHHHHHCCCee
Confidence 69999999999998 777 889999999999998
No 258
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=45.91 E-value=71 Score=30.39 Aligned_cols=92 Identities=10% Similarity=0.100 Sum_probs=65.7
Q ss_pred HHHhhccccchHHHHHHHHhhCCCC-CCcchHHHHHHHHHHHccChHHHHhccccccccccCc-----hhhHHHHHHHHH
Q 014453 112 VLLLEAPIRGVGPMLTAIRKIQSST-EHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLP-----RDFFLYCYYGGM 185 (424)
Q Consensus 112 ~~~~~~~~~~i~~L~~A~~rl~~~~-~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~-----~~~l~Y~YY~G~ 185 (424)
....++.-.++..+...+ ..++ ..-.......+++++..+..+.|.+.+.+-. ..+ | .+-+......|.
T Consensus 110 ~~~~g~~eeAL~~l~~~i---~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~~-~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 110 QAILGDLDKSLETCVEGI---DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NAI-EDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HHHHTCHHHHHHHHHHHH---TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh---ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-ccccccchHHHHHHHHHH
Confidence 334555666666676664 3332 2345677889999999999999999887621 111 3 467777777898
Q ss_pred HHHhhh--cHHHHHHHHHHHhc-ccC
Q 014453 186 IFIGQK--RFRKALELLHNVVT-APM 208 (424)
Q Consensus 186 I~~~~~--~y~~A~~~~~~a~~-~P~ 208 (424)
+.+..+ +|.+|...|+.... .|.
T Consensus 185 v~l~~g~~~~q~A~~~f~El~~~~p~ 210 (310)
T 3mv2_B 185 IKFATNKETATSNFYYYEELSQTFPT 210 (310)
T ss_dssp HHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred HHHHhCCccHHHHHHHHHHHHHhCCC
Confidence 888887 99999999999887 454
No 259
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=45.91 E-value=55 Score=26.89 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=34.6
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.=.-|..++
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 50 GELPMSKIGERLMVH-PTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 459999999999998 78899999999999999988876654
No 260
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=45.28 E-value=54 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=33.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
...+.++|++.+|++ ...+-..+..|...|.|...-+
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 678999999999998 7889999999999999987643
No 261
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=45.09 E-value=37 Score=29.06 Aligned_cols=64 Identities=14% Similarity=-0.014 Sum_probs=45.2
Q ss_pred HHHHHHHHHHccChHHHHhccccccccccC-c--------hhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhcc
Q 014453 143 HPEFLQLCLLAKCYKAGLSVLEDDIYEINL-P--------RDFFLYCYYGGMIFIGQKRFRKALELLHNVVTA 206 (424)
Q Consensus 143 h~~l~rlcL~~~~y~~Al~il~~~i~~~~~-~--------~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~~ 206 (424)
+...-..+...++|+.|+...++.+---+. | ......++-.|.++..+++|.+|..+|..|+..
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 445555667788888887777765421111 0 012337788899999999999999999999974
No 262
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=44.96 E-value=41 Score=27.15 Aligned_cols=48 Identities=13% Similarity=0.071 Sum_probs=37.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC---CEEEEec
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD---GMVRFLE 358 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~---g~v~F~~ 358 (424)
...++.++||+.++++ ...+-.+|.+|...|.|.-.-+..+ ..|...+
T Consensus 43 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp HCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 4469999999999998 7889999999999999986655433 3444443
No 263
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.80 E-value=1.2e+02 Score=24.13 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=36.4
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
...++.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 45 ~~~~~~~~la~~l~~s-~~tvs~~l~~L~~~glv~r~~~~~d~ 86 (145)
T 2a61_A 45 EGPKRPGELSVLLGVA-KSTVTGLVKRLEADGYLTRTPDPADR 86 (145)
T ss_dssp HCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCC
Confidence 4579999999999998 78899999999999999987775543
No 264
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=44.78 E-value=89 Score=25.68 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=33.3
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..
T Consensus 65 ~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~ 104 (161)
T 3e6m_A 65 YGELTVGQLATLGVME-QSTTSRTVDQLVDEGLAARSISDA 104 (161)
T ss_dssp HSEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC---
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCcc
Confidence 3589999999999998 788999999999999998766544
No 265
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=44.52 E-value=1.2e+02 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=35.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-..|.+|...|.|.-.-+..
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~ 88 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMADRLEQKNLIARTHNTK 88 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeecCCCC
Confidence 4579999999999998 788999999999999998776653
No 266
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=44.20 E-value=1.2e+02 Score=24.09 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=35.6
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-..|.+|...|.|.-.-+..
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~ 87 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVDKLEEMGLVVRVRDRE 87 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHHHHHHCCCEEeecCCC
Confidence 6789999999999998 788999999999999998776654
No 267
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=44.15 E-value=67 Score=34.59 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 014453 141 TLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNV 203 (424)
Q Consensus 141 ~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a 203 (424)
.+-..+++.|+.+++|+-|+++-.+.+.-. |.++..+ |+...+|+.+++|+.|.-.+-.|
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW-~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESW-YNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHH-HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHH-HHHHHHHHHhccHHHHHHHHhcC
Confidence 355568899999999999999988764311 4445544 56789999999999998776655
No 268
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=43.37 E-value=65 Score=24.29 Aligned_cols=44 Identities=16% Similarity=0.027 Sum_probs=35.3
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLED 359 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~ 359 (424)
..++..+|++.++++ ..-+-..+..|...|.|...- |.....+.
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 569999999999998 788999999999999997532 45544433
No 269
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.33 E-value=45 Score=27.17 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=33.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE--EEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA--TINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A--~Id~~~ 351 (424)
..++.++||+.++++ ..-+-.+|.+|+..|.|.- .-+..+
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~~~d 95 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVDGLISLGLVVKLNKTIPND 95 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEESCC--CTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCcCCCCC
Confidence 569999999999998 7889999999999999987 655543
No 270
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=43.30 E-value=1.2e+02 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=34.6
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
..++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~~Le~~gli~r~~~~~ 80 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIKRLEEQGFIYRQEDAS 80 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCC
Confidence 478999999999998 788999999999999998777654
No 271
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=43.10 E-value=39 Score=27.31 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=32.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-..|.+|...|.|.-.-+..
T Consensus 52 ~~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~ 91 (148)
T 3nrv_A 52 ASDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNGHSE 91 (148)
T ss_dssp SSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC-----
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCC
Confidence 4589999999999998 788999999999999998766543
No 272
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=43.07 E-value=38 Score=26.48 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=33.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
..++..+|++.+|++ ...+-..+..|...|.|...-+
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999998 7889999999999999987654
No 273
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=42.67 E-value=53 Score=32.36 Aligned_cols=46 Identities=13% Similarity=0.121 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 299 ~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
-+..|.++-.....+|-++||+.++|+ ..-+-.++.+|+++|.|.-
T Consensus 40 n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 344455555667899999999999998 8899999999999999865
No 274
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=42.51 E-value=1e+02 Score=25.14 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=32.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ...+-.+|.+|+..|.|.-.-+..
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~glv~r~~~~~ 100 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVARLLERGFIRRETHGD 100 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC-----
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeecCCC
Confidence 4679999999999998 788999999999999998665543
No 275
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=42.45 E-value=30 Score=26.09 Aligned_cols=36 Identities=8% Similarity=0.215 Sum_probs=31.1
Q ss_pred hhhhcccHHHHHHHh-CCCCHHHHHHHHHHhHHcCceE
Q 014453 308 QTYLTLSLQDIANTV-QLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l-~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
+.=++..+.|+++.+ +.. +.++..+|..||.+|.+.
T Consensus 17 ~~KskfYf~D~~k~~P~~k-~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 17 GSKSKFYFNDFTDLFPDMK-QREVKKILTALVNDEVLE 53 (78)
T ss_dssp HHSSCEEHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cccccchHHHHHHHccccC-HHHHHHHHHHHHhcCceE
Confidence 345788899999999 555 899999999999999886
No 276
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=42.36 E-value=32 Score=27.80 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=33.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ...+-.+|.+|...|.|.-.-|..+
T Consensus 48 ~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~D 88 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLD-SGTLTPLLKKLEKKDYVVRTREEKD 88 (140)
T ss_dssp TCEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCeEecCCCCC
Confidence 4679999999999998 7889999999999999987766543
No 277
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=42.16 E-value=1.2e+02 Score=23.58 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=35.4
Q ss_pred hcccHHHHHHHh-CCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTV-QLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l-~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++..+|++.+ +++ ..-+-..|..|...|.|.-..+..+
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~~Le~~GlI~r~~~~~d 74 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLREMEKDGLVHRESFNEL 74 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHHHHHHHTSEEEEEECCS
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCCEEEeecCCC
Confidence 578999999999 998 7889999999999999998877543
No 278
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=42.06 E-value=38 Score=33.03 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 299 ~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
-+..|.++-.....+|-++||+.++|+ ..-+-.++.+|+.+|.|.-
T Consensus 17 n~~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 17 NAGAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEe
Confidence 334455555667899999999999998 8899999999999999854
No 279
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=42.03 E-value=1.2e+02 Score=23.72 Aligned_cols=42 Identities=7% Similarity=0.076 Sum_probs=36.3
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
...++.++||+.++++ ...+-.+|.+|...|.|.-..+..++
T Consensus 46 ~~~~~~~~la~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~ 87 (138)
T 1jgs_A 46 AACITPVELKKVLSVD-LGALTRMLDRLVCKGWVERLPNPNDK 87 (138)
T ss_dssp HSSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECTTCS
T ss_pred cCCCCHHHHHHHHCCC-hHHHHHHHHHHHHCCCEEecCCcccC
Confidence 4578999999999998 78899999999999999987776543
No 280
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=41.96 E-value=1e+02 Score=23.63 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=36.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFL 357 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~ 357 (424)
..++..+||+.+|++ ...+-..+..|...|.|...-+ +..+.+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~~~~--gr~~~y~ 81 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKAKRQ--GQSMIYS 81 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE--TTEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe--CCEEEEE
Confidence 568999999999998 7889999999999999987654 3444444
No 281
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=41.81 E-value=51 Score=28.91 Aligned_cols=35 Identities=6% Similarity=0.188 Sum_probs=32.8
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
.+++.++||+.+|++ ...+-..+..|...|.|...
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 789999999999997 88999999999999999876
No 282
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.43 E-value=95 Score=24.66 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=32.4
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEE
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATI 347 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~I 347 (424)
...++.++||+.+|++ ...+-..+..|...|.|...-
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEE
Confidence 4679999999999998 789999999999999998653
No 283
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=41.39 E-value=1.4e+02 Score=24.13 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=34.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
..++.++||+.++++ ...+-..|.+|...|.|.-.-+..
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~ 95 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVDSLEKRGLVVREMDPV 95 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEEECTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCC
Confidence 479999999999998 788999999999999998776654
No 284
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=41.23 E-value=35 Score=27.91 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=32.2
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D 93 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLKRLEQSGWVKRERQQSD 93 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEC------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeCCCCCC
Confidence 4689999999999998 7889999999999999987766543
No 285
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=41.10 E-value=36 Score=27.45 Aligned_cols=59 Identities=8% Similarity=-0.083 Sum_probs=42.1
Q ss_pred HHHHHHHHHH----ccChHHHHhccccccccccCchhhHHHHHHHHHHHHh----hhcHHHHHHHHHHHhcc
Q 014453 143 HPEFLQLCLL----AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRKALELLHNVVTA 206 (424)
Q Consensus 143 h~~l~rlcL~----~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~----~~~y~~A~~~~~~a~~~ 206 (424)
+..+-.++.. .+++..|...+.+..- .....=.|..|.+|.. .+++.+|..+|+.|...
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACG-----LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4455555555 6888888888877543 1223345567788877 89999999999999874
No 286
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=40.90 E-value=1e+02 Score=24.15 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=31.7
Q ss_pred cccHHHHHHHh-CCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 312 TLSLQDIANTV-QLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 312 ~Isl~~Ia~~l-~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
+++..+|++.+ |++ ..-+-..+..|...|.|.-+.+
T Consensus 42 ~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 42 RQNFNDIRSSIPGIS-STILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp CBCHHHHHHTSTTCC-HHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCHHHHHHHccCCC-HHHHHHHHHHHHHCCCEEEeec
Confidence 35599999999 898 7888889999999999997776
No 287
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=40.85 E-value=29 Score=29.24 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=41.0
Q ss_pred CccHHHHHHHHhhc-----CCCcccHHHHHHHHHHhHHHHhhhcccccccccccCcchhhHHHHHHHhhcccccc
Q 014453 1 MQSIENLVTQIQGL-----SSNASDITALKDYLKAAEDLLRSESTRLLSFLDQLDPSKHSLGYLYFLEPCMYCSI 70 (424)
Q Consensus 1 ~~~l~~~~~~i~~~-----~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~L~~ldp~~~sl~~l~ll~~~~~~~~ 70 (424)
|+.++.|.+.++.| +.|++....|......+...-..-......-+.. -|..|=|+.|||+|.-.....
T Consensus 1 m~~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k-~~~~~KL~~LYL~DsIvrn~~ 74 (145)
T 3d9j_A 1 MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQK-CKPEYKVPGLYVIDSIVRQSR 74 (145)
T ss_dssp -CHHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH-SCGGGHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeehhhhhHHHHHHhh
Confidence 89999999999999 5566666666665544221110000011111222 356688999999999876544
No 288
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=40.29 E-value=88 Score=24.17 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=36.0
Q ss_pred hhcccHHHHHHHh-CCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTV-QLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l-~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++..+|++.+ +++ ..-+-..|..|...|.|..+.+..+
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~~Le~~GlI~r~~~~~d 66 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLRELEADGVINRIVYNQV 66 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEEeecCCC
Confidence 4679999999999 998 7888889999999999998887643
No 289
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.19 E-value=48 Score=26.96 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=33.3
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-..+..
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~ 98 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLKRLQAAGLVTRTRAAS 98 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCcc
Confidence 4679999999999998 788999999999999998766543
No 290
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=39.96 E-value=1.2e+02 Score=23.10 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=33.6
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
-..++..+||+.++++ ..-+-..+..|...|.|...-+
T Consensus 32 ~~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 32 RADQSASSLATRLPVS-RQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HSCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEec
Confidence 3569999999999998 7889999999999999987655
No 291
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=39.90 E-value=82 Score=25.07 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=34.2
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
...++.++||+.++++ ...+-..|..|...|.|.-.-+..
T Consensus 49 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~ 88 (142)
T 2bv6_A 49 ESPVNVKKVVTELALD-TGTVSPLLKRMEQVDLIKRERSEV 88 (142)
T ss_dssp SSEEEHHHHHHHTTCC-TTTHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCC
Confidence 3469999999999997 678888999999999998777643
No 292
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=39.83 E-value=29 Score=30.10 Aligned_cols=73 Identities=7% Similarity=-0.098 Sum_probs=43.3
Q ss_pred chHHHHHHHHhhCCCCCCcchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhh----cHHHH
Q 014453 121 GVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK----RFRKA 196 (424)
Q Consensus 121 ~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~----~y~~A 196 (424)
++..++.|+.. .+ ...+..+-.++...++++.|...+.+.+- .....-+|..|.+|.. + ++.+|
T Consensus 5 A~~~~~~aa~~--g~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----~g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 5 PGSQYQQQAEA--GD----RRAQYYLADTWVSSGDYQKAEYWAQKAAA-----QGDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp TTHHHHHHHHT--TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred HHHHHHHHHHC--CC----HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 44555555532 11 22345556666667788888777776542 1233344556666666 5 78888
Q ss_pred HHHHHHHhc
Q 014453 197 LELLHNVVT 205 (424)
Q Consensus 197 ~~~~~~a~~ 205 (424)
..+|+.+..
T Consensus 73 ~~~~~~A~~ 81 (212)
T 3rjv_A 73 RQLAEKAVE 81 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888754
No 293
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=39.78 E-value=1.1e+02 Score=25.54 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=35.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC---CEEEEec
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD---GMVRFLE 358 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~---g~v~F~~ 358 (424)
-..++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+ ..|...+
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 4569999999999998 7889999999999999987765443 3444443
No 294
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=39.65 E-value=46 Score=24.91 Aligned_cols=35 Identities=9% Similarity=0.246 Sum_probs=31.2
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
++..+||++||++ -.++-..+-+|-.+|.+...=+
T Consensus 30 ~Ta~~IAkkLg~s-K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 30 TTAISLSNRLKIN-KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp ECHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEECC
T ss_pred hHHHHHHHHHCCC-HHHHHHHHHHHHHCCCEecCCC
Confidence 7899999999998 7899999999999999986533
No 295
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=39.61 E-value=28 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHhc-ccCc
Q 014453 181 YYGGMIFIGQKRFRKALELLHNVVT-APMS 209 (424)
Q Consensus 181 YY~G~I~~~~~~y~~A~~~~~~a~~-~P~~ 209 (424)
|-.|.++...++|.+|..+|..++. .|..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 4578999999999999999999998 6765
No 296
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=39.58 E-value=2.7e+02 Score=26.94 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcccCccccHHHHHHHHHHHHHHHHhcCCCCCCCCcccCHHHhhhhhhccHH-HHHHHHHHhcCCHHHHH
Q 014453 194 RKALELLHNVVTAPMSSINAIAVEAYKKYILVSLIHHGQFSSTLPKYTSSAAQRNLKNFSQP-YMELVNTYNTGKIVELE 272 (424)
Q Consensus 194 ~~A~~~~~~a~~~P~~~~s~i~~ea~Kk~iLv~LL~~G~~~~p~p~~~s~~~~~~~k~~~~~-Y~~L~~a~~~gdl~~~~ 272 (424)
..|.-+|....-+|-..+++-+-.++-.++| +..|-.+.|+. +.|. .++..-.. |..|.++-..||+..|-
T Consensus 187 ~aai~H~~f~~IHPF~DGNGR~~Rll~~l~L---~~~g~~~~~~~-~ls~----~i~~~~~~Yy~~L~~~~~~~d~~~~i 258 (373)
T 3eqx_A 187 KMAMAHYQFEAIHPFIDGNGRTGRVLNILYL---IDQQLLSAPIL-YLSR----YIVAHKQDYYRLLLNVTTQQEWQPWI 258 (373)
T ss_dssp HHHHHHHHHHHHCCSSSCHHHHHHHHHHHHH---HHTTSCSSSCC-CTHH----HHHHTHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCchHHHHHHHHHH---HhcCCCCCccc-cHHH----HHHHHHHHHHHHHHHhhccCCCchHH
Confidence 4566777777779988888755344333333 33454431211 1222 23333234 55677777889988764
Q ss_pred HHHHHcccccccccchhHHHHHH---HHHHHH-----------HHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhH
Q 014453 273 TYVQTNREKFESDNNLGLVKQVV---SSMYKR-----------NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMI 338 (424)
Q Consensus 273 ~~l~~~~~~f~~Dgn~~Lv~~l~---~~v~r~-----------~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI 338 (424)
..+-..-..- .+.....+..+. ....++ .+..+-...-.++.+++++.++++ ..-|...+.+++
T Consensus 259 ~f~l~~i~~~-~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~p~~t~~~~~~~~~~S-~~TA~r~L~~L~ 336 (373)
T 3eqx_A 259 IFILNAVEQT-AKWTTHKIAAARELIAHTTEYVRQQLPKIYSHELVQVIFEQPYCRIQNLVESGLAK-RQTASVYLKQLC 336 (373)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHCSEEEHHHHHHTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHCCCccHHHHHHHhCcC-HHHHHHHHHHHH
Confidence 4322110000 000111111111 111111 111111112247889999999987 788999999999
Q ss_pred HcCceE
Q 014453 339 QDGEIF 344 (424)
Q Consensus 339 ~~G~I~ 344 (424)
..|.|.
T Consensus 337 e~GiL~ 342 (373)
T 3eqx_A 337 DIGVLE 342 (373)
T ss_dssp HTTSCE
T ss_pred HCCcEE
Confidence 999996
No 297
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=39.55 E-value=49 Score=26.62 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred HHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 305 ~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
.+...-..+++++||+.++++ ..-+-..+..|...|.|.-
T Consensus 24 ~l~~~~~~~s~~ela~~l~is-~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 24 RYNDSGEGAKINRIAKDLKIA-PSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHTTTSCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcCCCcCHHHHHHHhCCC-hHHHHHHHHHHHHCCCEEe
Confidence 333344679999999999998 7889999999999998864
No 298
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.41 E-value=96 Score=25.11 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=32.9
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-..+.
T Consensus 55 ~~~~t~~ela~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 55 NDAMMITRLAKLSLME-QSRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp CSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC--
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCC
Confidence 4579999999999998 78899999999999999865543
No 299
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=38.91 E-value=97 Score=23.46 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=33.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
...+..+|++.+|++ ...+-..+..|...|.|...-+.
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeC
Confidence 568999999999998 67888999999999999876543
No 300
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=38.71 E-value=27 Score=25.94 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=22.4
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHH
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQ 336 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~ 336 (424)
|-+.++.+|+..++++ .+++|.++..
T Consensus 46 YL~~~l~eia~~l~~~-~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCS-VEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSC-HHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCC-HHHHHHHHHH
Confidence 8899999999999987 8999986543
No 301
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=38.42 E-value=1.8e+02 Score=26.47 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=58.7
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecCCCccChHHHHHHHHHHHHHHHHHHH--H
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLEDPEQYKTCEMIEHIDSSIQRIMSLSK--K 385 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~~~~~~~~~~~~~~~~~i~~~~~L~~--~ 385 (424)
.-|..-.+.+++..++++ ..++..++..|+..|.|. +|++ +.|-..+...++.+.+.... =+. .
T Consensus 153 ~g~~pp~~~dl~~~l~~~-~~~~~~~l~~l~~~g~lv-~l~~-----------~~~~~~~~~~~~~~~l~~~~-~~~~it 218 (258)
T 1lva_A 153 SRWQPPSFKEVAGSFNLD-PSELEELLHYLVREGVLV-KIND-----------EFYWHRQALGEAREVIKNLA-STGPFG 218 (258)
T ss_dssp HTTSCCBHHHHHHHTTCC-HHHHHHHHHHHHHTTSEE-ESSS-----------SBEEEHHHHHHHHHHHHHHH-TTSCBC
T ss_pred CCCCCCCHHHHHhHhCCC-HHHHHHHHHHHHHCCCEE-EecC-----------CeEEcHHHHHHHHHHHHHHH-hcCCcC
Confidence 456667889999999997 899999999999999887 4542 23333455555555555544 232 6
Q ss_pred HHHHhHHhhcCHHHHHHh
Q 014453 386 LTAMDELISCDPLYLGKA 403 (424)
Q Consensus 386 ~~~~d~~l~~~~~yi~~~ 403 (424)
+.++.+.+++|+.|.--.
T Consensus 219 ~a~~Rd~lg~SRK~aIpl 236 (258)
T 1lva_A 219 LAEARDALGSSRKYVLPL 236 (258)
T ss_dssp HHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHH
Confidence 778889999999776443
No 302
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=37.56 E-value=7 Score=36.69 Aligned_cols=38 Identities=21% Similarity=0.425 Sum_probs=0.0
Q ss_pred hcccHHHHHHHh-CCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 311 LTLSLQDIANTV-QLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 311 s~Isl~~Ia~~l-~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
.=|++.+|++++ +++ ++++...+..|+.+|.|+.+||.
T Consensus 223 ~Gi~~~~I~~~l~~~~-~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMS-VSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ----------------------------------------
T ss_pred cCCCHHHHHHHhcCCC-HHHHHHHHHHHHhCCEEeccccc
Confidence 457888999999 676 89999999999999999999995
No 303
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=37.46 E-value=47 Score=27.00 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.2
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
+|.++||++++++ ..++...+..++..|.|.=.-+.
T Consensus 52 ps~~~LA~~l~~s-~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 52 PTPAELAERMTVS-AAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHHHHHTSSSC-HHHHHHHHHHHHHTTSSEECC--
T ss_pred CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEE
Confidence 8999999999998 89999999999999999765443
No 304
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=37.37 E-value=1.4e+02 Score=22.86 Aligned_cols=33 Identities=9% Similarity=-0.074 Sum_probs=30.8
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
++.++||..++++ ...+..++..+...|.|.-.
T Consensus 21 ~~~t~La~~~~ls-~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLS-YALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 9999999999998 89999999999999999754
No 305
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=37.17 E-value=1.6e+02 Score=23.68 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcc-cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 288 LGLVKQVVSSMYKRNIQRLTQTYLTL-SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 288 ~~Lv~~l~~~v~r~~I~~l~~~Ys~I-sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..+.+|+...+.+.-+..--+.=.+| |..++|+.+|++ ..-+..-+..+..+|.|..+ +..|+.+-..
T Consensus 13 ~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVS-r~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 13 LPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVN-PNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 45677776665544443334445788 789999999998 88888899999999999743 4567666443
No 306
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=36.90 E-value=82 Score=23.76 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=36.0
Q ss_pred HHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 302 NIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 302 ~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
.+..+...=..++..+||+.+|++ ..|+.+.+-.|=.+|.|.
T Consensus 24 VLe~LkeaG~PlkageIae~~Gvd-KKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 24 ILQVLTEAGSPVKLAQLVKECQAP-KRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHTSCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHcCCcc
Confidence 355566666799999999999998 799999999999999864
No 307
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=36.41 E-value=49 Score=23.46 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=29.0
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
-|.++++++..|++ .+++-..+.++-+.|.|.
T Consensus 25 ildI~~~a~kygV~-kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 25 FLDIEHFSKVYGVE-KQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp EEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEE
T ss_pred EEeHHHHHHHhCCC-HHHHHHHHHHHHHCCCee
Confidence 47789999999998 899999999999999885
No 308
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=36.36 E-value=69 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=34.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.-.-|..+
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D 91 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVKILSQEDYFDKKRNEHD 91 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHHHHHHTTSSCCBCCSSS
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCC
Confidence 569999999999998 7888899999999999986666543
No 309
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=35.76 E-value=33 Score=29.68 Aligned_cols=80 Identities=10% Similarity=-0.044 Sum_probs=49.4
Q ss_pred hhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHHHcc----ChHHHHhccccccccccCchhhHHHHHHHHHHHHh-
Q 014453 115 LEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCLLAK----CYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG- 189 (424)
Q Consensus 115 ~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL~~~----~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~- 189 (424)
.++.-.++..++.|+.. . ....+..+-.++.. + +++.|...+.+.+- .....-+|..|.++..
T Consensus 31 ~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-----~g~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-----AGSKSGEIVLARVLVNR 98 (212)
T ss_dssp HTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcC
Confidence 34555677777777632 1 12234444444444 5 78888887777542 1233344566777765
Q ss_pred ---hhcHHHHHHHHHHHhcc
Q 014453 190 ---QKRFRKALELLHNVVTA 206 (424)
Q Consensus 190 ---~~~y~~A~~~~~~a~~~ 206 (424)
.+++.+|..+|+.+...
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~ 118 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARD 118 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSS
T ss_pred CCCccCHHHHHHHHHHHHHc
Confidence 77899999999998873
No 310
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=35.36 E-value=78 Score=24.93 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc-cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 290 LVKQVVSSMYKRNIQRLTQTYLTL-SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 290 Lv~~l~~~v~r~~I~~l~~~Ys~I-sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
+..++...+.+.-...--..=.++ |..++|+.+|++ ..-+...+..+..+|.|... +..|+.+-
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vS-r~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQIN-PLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 444444443333222222334678 899999999997 88899999999999998633 45666543
No 311
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=35.35 E-value=55 Score=32.19 Aligned_cols=48 Identities=6% Similarity=-0.130 Sum_probs=24.0
Q ss_pred ccChHHHHhccccccccccCchhhHHHHHHHHHHHHh----hhcHHHHHHHHHHHhc
Q 014453 153 AKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRKALELLHNVVT 205 (424)
Q Consensus 153 ~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~----~~~y~~A~~~~~~a~~ 205 (424)
.++++.|...+.+..- .....-.+..|.+|.. .+++.+|..+|+.+..
T Consensus 128 ~~~~~~A~~~~~~a~~-----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAE-----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp CCCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4455555555444321 1223334455555554 4566666666666654
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.17 E-value=74 Score=35.10 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
....++.-|+..+.|+.|..++.- .+. ....+ |..|+++...|+|++|.++|+.|-.
T Consensus 812 ~~~~l~~~L~~~~~~~~a~eL~~~--~~~---t~~~~--yv~gr~~L~~ge~~~A~~~F~kAA~ 868 (950)
T 4gq2_M 812 LVTELVEKLFLFKQYNACMQLIGW--LNS---DPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 868 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHGGG--CCS---SHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHhcHHHHHHHHHhh--cCC---ChHHH--HHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 345677888888999888665532 211 12333 7999999999999999999998875
No 313
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=34.75 E-value=1.4e+02 Score=23.94 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=31.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.++++ ...+-.+|.+|...|.|.-.-+..+
T Consensus 53 ~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~D 92 (150)
T 3fm5_A 53 EGVNQRGVAATMGLD-PSQIVGLVDELEERGLVVRTLDPSD 92 (150)
T ss_dssp TCCCSHHHHHHHTCC-HHHHHHHHHHHHTTTSEEC------
T ss_pred CCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeeCCccc
Confidence 368999999999998 7889999999999999987666543
No 314
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.13 E-value=3.3e+02 Score=26.79 Aligned_cols=64 Identities=8% Similarity=0.008 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHccChHHHHhcccccccc---ccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDDIYE---INLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~i~~---~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
+...+.++....|+|..|..++..--.+ .......+.|+....+++...+||.+|...+..+-.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3467888999999999999998874222 122457889999999999999999999999988743
No 315
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=33.51 E-value=2.2e+02 Score=24.10 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=36.3
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~D 95 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVANLEKNGYVDVIPSPHD 95 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSC
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCC
Confidence 4579999999999998 7888999999999999998887654
No 316
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=32.97 E-value=78 Score=25.30 Aligned_cols=50 Identities=6% Similarity=0.101 Sum_probs=38.5
Q ss_pred HHHHHhhhhcccHHHHHHHh--CCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 303 IQRLTQTYLTLSLQDIANTV--QLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l--~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
|..+-+...+++.++||+.+ +++ ...+...|..+...|.|... ..|+...
T Consensus 18 IL~~L~~~g~~s~~eLA~~l~~giS-~~aVs~rL~~Le~~GLV~~~---~rg~Y~L 69 (111)
T 3b73_A 18 ILEIIHEEGNGSPKELEDRDEIRIS-KSSVSRRLKKLADHDLLQPL---ANGVYVI 69 (111)
T ss_dssp HHHHHHHHSCBCHHHHHTSTTCCSC-HHHHHHHHHHHHHTTSEEEC---STTCEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEec---CCceEEE
Confidence 33333445699999999999 887 88999999999999999873 3444443
No 317
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.93 E-value=67 Score=23.91 Aligned_cols=49 Identities=10% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHhCCCCHHHHHHHHHHhHH
Q 014453 290 LVKQVVSSMYKRNIQRLTQTY-----LTLSLQDIANTVQLNSSKEAEMHVLQMIQ 339 (424)
Q Consensus 290 Lv~~l~~~v~r~~I~~l~~~Y-----s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~ 339 (424)
.+.++...+....-..+...| .-.|..+||+.+|++ ..-+...+.++..
T Consensus 11 ~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis-~~tV~~~~~ra~~ 64 (87)
T 1tty_A 11 ELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT-RERIRQIEVKALR 64 (87)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 344444555455545555555 579999999999998 7888887776654
No 318
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=32.46 E-value=2.5e+02 Score=27.10 Aligned_cols=33 Identities=12% Similarity=0.124 Sum_probs=29.3
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
.++.+++++.+|++ ..-|...+.+++..|.|.-
T Consensus 311 ~~t~~~~~~~~gvS-~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 311 YCRIQNLVESGLAK-RQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp EEEHHHHHHTSSSC-HHHHHHHHHHHHHTTSCEE
T ss_pred cccHHHHHHHhCCC-HHHHHHHHHHHHHCCcEEE
Confidence 36788999999997 8999999999999999973
No 319
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.31 E-value=72 Score=27.97 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=33.8
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..+
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~~Le~~GlV~r~~~~~D 100 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSKKLEERGYLRFSKRLND 100 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEEECC---
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCC
Confidence 579999999999998 7889999999999999988776544
No 320
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.06 E-value=56 Score=26.24 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=33.5
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
..++.++||+.++++ ...+-..|.+|...|.|.-..+.
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHHHHHHHTSEECCBCS
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHHHHHHCCCEEeccCC
Confidence 479999999999998 78899999999999999866554
No 321
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=31.03 E-value=67 Score=26.04 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=32.5
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
....++.++||+.++++ ..-+-..|..|...|.|.-
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHHHHHHTTSEEC
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 56789999999999998 6788889999999999986
No 322
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.80 E-value=1.4e+02 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=39.7
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
......+.++||..+|++ +.+++..+.+|...|.+. ++ .+|.|...+
T Consensus 174 l~~~~~t~~~la~~~~l~-~~~V~~~l~~L~~~~~v~-~~--~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLK-EREVREKISEMARFVPVK-II--NDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCEE-EE--TTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcC-HHHHHHHHHHHHhcCCeE-Ee--cCCeEEecH
Confidence 455789999999999998 999999999999999998 44 367777654
No 323
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.70 E-value=39 Score=25.17 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHH
Q 014453 182 YGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKY 222 (424)
Q Consensus 182 Y~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~ 222 (424)
-.|--.+..+++++|..+|..|+. ||+-+ -.+..|++-
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~---~LL~i~q~t 60 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ---QLLQVLQQT 60 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH---HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHhh
Confidence 456677788899999999999999 88753 134555553
No 324
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=30.26 E-value=1.3e+02 Score=23.61 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=34.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
..++.++||+.+|++ ...+-..+..|...|.|...-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEecC
Confidence 678999999999998 78899999999999999887763
No 325
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=30.22 E-value=1.2e+02 Score=24.61 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=32.8
Q ss_pred hhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecC
Q 014453 308 QTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQK 350 (424)
Q Consensus 308 ~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~ 350 (424)
.....++.++||+.++++ ...+-.+|.+|...|.|.-.-+..
T Consensus 58 ~~~~~~~~~ela~~l~i~-~~tvs~~l~~Le~~Gli~r~~~~~ 99 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVT-NGNVSGLVNRLIKDGMVVKAMSAD 99 (160)
T ss_dssp HCTTCEEHHHHHHHCSSC-CSCHHHHHHHHHHHTSEEEC----
T ss_pred HcCCCCCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCC
Confidence 344679999999999997 677888999999999998765543
No 326
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=30.12 E-value=2.3e+02 Score=23.22 Aligned_cols=41 Identities=10% Similarity=0.123 Sum_probs=33.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.-.-+..++
T Consensus 61 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~Dr 101 (168)
T 3u2r_A 61 EGMATLQIADRLISR-APDITRLIDRLDDRGLVLRTRKPENR 101 (168)
T ss_dssp SCEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEeecCCCCCC
Confidence 479999999999998 57888899999999999988876554
No 327
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.12 E-value=1.3e+02 Score=21.29 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHH
Q 014453 291 VKQVVSSMYKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQ 339 (424)
Q Consensus 291 v~~l~~~v~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~ 339 (424)
+..+...+.......+...+.-.+..+||+.+|++ ..-+...+.++..
T Consensus 10 l~~~l~~L~~~e~~vl~l~~~g~s~~eIA~~l~is-~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 10 IRARLQTLSERERQVLSAVVAGLPNKSIAYDLDIS-PRTVEVHRANVMA 57 (79)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTTCCHHHHHHHTTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 33444444444444444457889999999999997 7777776666544
No 328
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=30.04 E-value=1.6e+02 Score=26.69 Aligned_cols=46 Identities=13% Similarity=0.126 Sum_probs=37.0
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEe
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFL 357 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~ 357 (424)
....+++++||+.++++ ..-+-..+..|...|.|.-. ...+.+...
T Consensus 163 ~~~~~s~~eLA~~lgls-ksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 163 ETKGTGITELAKMLDKS-EKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HHTCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 34689999999999998 78899999999999999865 334444443
No 329
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.65 E-value=1.6e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=34.8
Q ss_pred hcccHHHHHHHh-----CCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 311 LTLSLQDIANTV-----QLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 311 s~Isl~~Ia~~l-----~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
..++..+|++.+ +++ ..-+-..+..+...|.|. ++..+++...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~~L~~~Glv~-~~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLNQFDDAGIVT-RHNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTSEE-EEECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHHHHHHCCCeE-EEeeCCCceEe
Confidence 469999999999 886 788999999999999997 44443444444
No 330
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=29.62 E-value=2.1e+02 Score=22.61 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=33.9
Q ss_pred cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 314 SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 314 sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
+.++||+.++++ ...+-..|.+|...|.|.-.-+..++
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 89 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVDKLEAKGLVRRIRDSKDR 89 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 999999999998 78899999999999999988776544
No 331
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=29.61 E-value=2.1e+02 Score=22.64 Aligned_cols=35 Identities=6% Similarity=0.185 Sum_probs=31.8
Q ss_pred ccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 313 LSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 313 Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
++..+||+.++++ ..-+-..|..|...|.|.-.-+
T Consensus 43 ~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 43 IDTDALSKSLKLD-VSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp EEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeeCC
Confidence 9999999999997 8899999999999999986544
No 332
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=29.12 E-value=42 Score=33.46 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=39.0
Q ss_pred ccChHHHHhcccccccc----cc-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 153 AKCYKAGLSVLEDDIYE----IN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 153 ~~~y~~Al~il~~~i~~----~~-~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
.+.|+.|+++..+..-- +. ..-+.+.-+.-.|.+|..+++|.+|..+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK 368 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 35688888877764221 11 1235777778889999999999999999998875
No 333
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=28.28 E-value=2.4e+02 Score=22.94 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=37.5
Q ss_pred HHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 306 LTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 306 l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
|...-..++.++||+.++++ ..-+-.+|.+|...|.|.=..|..++
T Consensus 40 L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 40 INRLPPEQSQIQLAKAIGIE-QPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp HHHSCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHcCCCCcHHHHHHHHCcC-HHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 33333457789999999998 78899999999999999988887654
No 334
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=28.10 E-value=1.1e+02 Score=26.07 Aligned_cols=43 Identities=16% Similarity=0.271 Sum_probs=35.5
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++..+||..+|++ .+.+-.++.+|..+|.|. ++ .|.+...+
T Consensus 168 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 210 (220)
T 3dv8_A 168 LKITHETIANHLGSH-REVITRMLRYFQVEGLVK--LS--RGKITILD 210 (220)
T ss_dssp ECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--eC--CCEEEEeC
Confidence 378999999999998 899999999999999995 33 45666554
No 335
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=27.61 E-value=90 Score=26.11 Aligned_cols=38 Identities=8% Similarity=0.119 Sum_probs=34.0
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
-...+..+||+.++++ ...+-..+..|...|.|..+-+
T Consensus 69 ~~~~t~~eLa~~lgls-~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPAS-RSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp GCCEEHHHHHTTSSSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred hCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 4678999999999998 7889999999999999998754
No 336
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=27.18 E-value=3.2e+02 Score=25.48 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhhCCCCCCcchHHHHHHHHHH-Hcc--ChHHHHhccccccccccCchhh
Q 014453 100 KFINVCKRYKDQVLLLEAPIRGVGPMLTAIRKIQSSTEHLTTLHPEFLQLCL-LAK--CYKAGLSVLEDDIYEINLPRDF 176 (424)
Q Consensus 100 ~~~~l~~~~~~~~~~~~~~~~~i~~L~~A~~rl~~~~~~lT~~h~~l~rlcL-~~~--~y~~Al~il~~~i~~~~~~~~~ 176 (424)
.+..+...+..........-+++.....++ .++|+ ..|.-+.. +.++ ..+ .|..++.+.++-+..- |+ .
T Consensus 31 ~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L-~~nP~--~~taWn~R--~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk-~ 102 (306)
T 3dra_A 31 DYKQIMGLLLALMKAEEYSERALHITELGI-NELAS--HYTIWIYR--FNILKNLPNRNLYDELDWCEEIALDN--EK-N 102 (306)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-HHCTT--CHHHHHHH--HHHHHTCTTSCHHHHHHHHHHHHHHC--TT-C
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHCcH--HHHHHHHH--HHHHHHcccccHHHHHHHHHHHHHHC--cc-c
Confidence 444444444443332222345555555554 56664 34443333 2333 334 8999999988865422 22 2
Q ss_pred HHHHHHHHHHH----Hhh---hcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHHHHH
Q 014453 177 FLYCYYGGMIF----IGQ---KRFRKALELLHNVVT-APMSSINAIAVEAYKKYILVS 226 (424)
Q Consensus 177 l~Y~YY~G~I~----~~~---~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~iLv~ 226 (424)
..-.+|.|.+. ... ++|.++..++..++. .|.+- ..=.++.|++-.
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny----~aW~~R~~vl~~ 156 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH----HVWSYRKWLVDT 156 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Confidence 33445566666 444 789999999999998 77653 223446666543
No 337
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=27.08 E-value=1.2e+02 Score=30.42 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHccChHHHHhccccc
Q 014453 142 LHPEFLQLCLLAKCYKAGLSVLEDD 166 (424)
Q Consensus 142 ~h~~l~rlcL~~~~y~~Al~il~~~ 166 (424)
+-...+..|.+.|+++.|+.+++.-
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M 52 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEA 52 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3455678888888999998888763
No 338
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=26.89 E-value=1e+02 Score=24.80 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=26.5
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
..++.++||+.++++ ..-+-.+|.+|...|.|.-.-|..+
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D 95 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQGLEKKGYIERRIPENN 95 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC-----
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeeCCCCC
Confidence 579999999999998 6788889999999999986665544
No 339
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=26.18 E-value=1.6e+02 Score=23.12 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=32.6
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
...+..+|++.+|++ ..-+-..+..|...|.|...-+
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEEEEE
Confidence 467899999999998 7889999999999999987654
No 340
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=25.63 E-value=97 Score=26.62 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=34.5
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++..+||..+|++ .+.+-.++.+|..+|.|.- + .|-+...+
T Consensus 177 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~d 219 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQ-PETFSRIMHRLGDEGIIHL--D--GREISILD 219 (227)
T ss_dssp CCSCTHHHHHHTTSC-HHHHHHHHHHHHHHTSEEE--S--SSCEEESC
T ss_pred ecCCHHHHHHHhCCC-HHHHHHHHHHHHHCCcEEe--c--CCEEEEeC
Confidence 467889999999998 8999999999999999953 3 34455544
No 341
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=25.51 E-value=1e+02 Score=30.37 Aligned_cols=56 Identities=9% Similarity=-0.116 Sum_probs=40.1
Q ss_pred HHHccChHHHHhcccccccc----cc-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 150 CLLAKCYKAGLSVLEDDIYE----IN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 150 cL~~~~y~~Al~il~~~i~~----~~-~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
+...+.|+.|+++..+..-. +. ..-+.+.-+.-.|.+|..+++|.+|..+++.++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44567888887776654211 11 1235777778889999999999999999988764
No 342
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=25.44 E-value=72 Score=30.80 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=35.2
Q ss_pred HHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 303 IQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 303 I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
|.++-. ...+|-++||+.++|+ ..-+-.++.+|+++|.|.-
T Consensus 25 il~~l~-~~~~sr~~la~~~gls-~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLT-KTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEe
Confidence 344445 7899999999999998 8899999999999999965
No 343
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=25.27 E-value=1.3e+02 Score=24.19 Aligned_cols=33 Identities=27% Similarity=0.273 Sum_probs=30.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCc-eE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGE-IF 344 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~-I~ 344 (424)
...++.+||+.-||+ ...++.+++..+.+|. +.
T Consensus 31 ~G~sleeIA~~R~L~-~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLD-FPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCC-HHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCC-HHHHHHHHHHHHHcCCccC
Confidence 678999999999998 8999999999999995 44
No 344
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=25.16 E-value=1.6e+02 Score=27.68 Aligned_cols=76 Identities=14% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHHHHHHccChH-HHHhccccccccccCchhhHHHHHHHHHHHHhhh--cHHHHHHHHHHHhc-ccCccccHHHHHHHHH
Q 014453 146 FLQLCLLAKCYK-AGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQK--RFRKALELLHNVVT-APMSSINAIAVEAYKK 221 (424)
Q Consensus 146 l~rlcL~~~~y~-~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~--~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk 221 (424)
.++-.+.++.|+ .|+...++.+. ++ -+..+-.+|.|.+....+ +|.+|..++..++. .|... .+=.+++
T Consensus 38 ~~~a~~~~~e~s~~aL~~t~~~L~-~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~ 110 (306)
T 3dra_A 38 LLLALMKAEEYSERALHITELGIN-EL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQ 110 (306)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHH-HC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH-HC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHH
Confidence 344556677774 68887777543 22 246667788999999998 99999999999998 88764 1234577
Q ss_pred HHHHHHH
Q 014453 222 YILVSLI 228 (424)
Q Consensus 222 ~iLv~LL 228 (424)
++|-.++
T Consensus 111 ~iL~~~~ 117 (306)
T 3dra_A 111 LIIGQIM 117 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7775554
No 345
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=25.09 E-value=2.6e+02 Score=22.19 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=36.4
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
....++.++||+.++++ ..-+-..|..|...|.|.-. +.+.+...+
T Consensus 19 ~~~~~~~~ela~~l~vs-~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~ 64 (142)
T 1on2_A 19 EKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIYE---KYRGLVLTS 64 (142)
T ss_dssp HHSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred hcCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEe---eCceEEEch
Confidence 34679999999999998 78889999999999998753 234555543
No 346
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=24.93 E-value=2.5e+02 Score=22.67 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=30.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFA 345 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A 345 (424)
..++..++|+.++++ ..-+-..|..|...|.|.-
T Consensus 53 ~~~~~~~la~~l~vs-~~tvs~~l~~Le~~Glv~r 86 (155)
T 2h09_A 53 GEARQVDMAARLGVS-QPTVAKMLKRLATMGLIEM 86 (155)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHHHHHHTTCEEE
T ss_pred CCcCHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEE
Confidence 568999999999997 7888899999999998753
No 347
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.90 E-value=68 Score=36.05 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 139 LTTLHPEFLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 139 lT~~h~~l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
.+..-..++.-|+..+.|+.|..++.- .+ .....+ |..|++++..++|.+|.++|..|-.
T Consensus 811 ~~~~~~~l~~~l~~~~~~~~~~~l~~~--~~---~~~~~~--yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 811 ENDLVTELVEKLFLFKQYNACMQLIGW--LN---SDPIAV--YLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp CSCHHHHHHHHHHHHSCTTHHHHHHHH--SC---CCHHHH--HHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred cchhHHHHHHHHHHhhhHHHHHHHhhh--cc---CCcHHH--HHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 345566788888889999888665432 21 112333 7899999999999999999999865
No 348
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=24.79 E-value=80 Score=31.93 Aligned_cols=56 Identities=5% Similarity=0.008 Sum_probs=41.2
Q ss_pred HHHccChHHHHhcccccccc----cc-CchhhHHHHHHHHHHHHhhhcHHHHHHHHHHHhc
Q 014453 150 CLLAKCYKAGLSVLEDDIYE----IN-LPRDFFLYCYYGGMIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 150 cL~~~~y~~Al~il~~~i~~----~~-~~~~~l~Y~YY~G~I~~~~~~y~~A~~~~~~a~~ 205 (424)
....+.|+.|+++..+..-. +. ..-+.+.-+.-.|.+|..+++|.+|..+++.++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34568899998877664211 11 1235777788889999999999999999998875
No 349
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.70 E-value=1.3e+02 Score=23.43 Aligned_cols=28 Identities=4% Similarity=0.194 Sum_probs=22.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHH
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQ 339 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~ 339 (424)
.-.|+.+||+.+|++ ..-|..++.+++.
T Consensus 38 e~~s~~EIA~~lgiS-~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVT-RERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 578999999999997 7777776665544
No 350
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=24.68 E-value=2.7e+02 Score=22.22 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=36.0
Q ss_pred hhcc-cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 310 YLTL-SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 310 Ys~I-sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
=.+| |..++|+.+|++ ..-+..-+..+..+|.|.. .+..|+.+-
T Consensus 32 G~~lPse~~La~~~~vS-r~tvr~Al~~L~~~Gli~~--~~g~G~~V~ 76 (126)
T 3by6_A 32 NDQLPSVRETALQEKIN-PNTVAKAYKELEAQKVIRT--IPGKGTFIT 76 (126)
T ss_dssp TCEECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred CCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEE--ecCCeEEEc
Confidence 3578 999999999997 8889999999999999853 445676554
No 351
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=24.65 E-value=2.1e+02 Score=21.80 Aligned_cols=41 Identities=7% Similarity=0.017 Sum_probs=35.1
Q ss_pred hhcccHHHHHHHhC-CCCHHHHHHHHHHhHHcCceEEEEecCC
Q 014453 310 YLTLSLQDIANTVQ-LNSSKEAEMHVLQMIQDGEIFATINQKD 351 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~-l~~~~eaE~~v~~mI~~G~I~A~Id~~~ 351 (424)
...++..+|++.++ ++ ..-+-..|..|...|.|.-+.+..+
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~~~d 77 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELKFLCGKGLIKKKQYPEV 77 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHHHHHHTTSEEEEEECSS
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHHHHHHCCCEEEeecCCC
Confidence 45789999999994 98 7888889999999999998777543
No 352
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=24.58 E-value=71 Score=27.08 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=30.1
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
..++-.+||..+|++ .+-+-.++.++..+|.|.
T Consensus 163 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 163 IKITRQEIGRIVGCS-REMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE
Confidence 368999999999998 899999999999999985
No 353
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=24.48 E-value=1.1e+02 Score=22.74 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=22.7
Q ss_pred hhhcccHHHHHHHhCCCCHHHHHHHHHHhH
Q 014453 309 TYLTLSLQDIANTVQLNSSKEAEMHVLQMI 338 (424)
Q Consensus 309 ~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI 338 (424)
.+.-.|..+||+.+|++ ..-|...+.++.
T Consensus 50 ~~~g~s~~eIA~~lgis-~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIA-EGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 46778999999999998 777776665543
No 354
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=24.37 E-value=1.6e+02 Score=27.64 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHhhh--hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 304 QRLTQTY--LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 304 ~~l~~~Y--s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
.++...| ..++.++||+++|++ ..-+.+.+..+-..|.+.-++..
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIY-RTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEecC
Confidence 3444444 579999999999998 89999999999999999978864
No 355
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.23 E-value=1.7e+02 Score=25.29 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=29.7
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
..|..+||+.+|+++. -+...+..|-.+|.|.-.
T Consensus 24 ~~s~~eia~~lgl~~~-tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPR-GALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHH-HHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcH-HHHHHHHHHHHCCCEEec
Confidence 4899999999999854 699999999999999643
No 356
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=24.22 E-value=76 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=31.3
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFAT 346 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~ 346 (424)
.++..+||+.+|++ ...+-..+..|...|.|...
T Consensus 33 ~~s~~eLa~~lgvs-~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIK-VNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 68999999999998 78999999999999999764
No 357
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=23.88 E-value=2.4e+02 Score=22.35 Aligned_cols=37 Identities=8% Similarity=0.081 Sum_probs=32.7
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
...++.+||+.+|++ ...+-..+..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 468999999999998 7889999999999999987654
No 358
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.76 E-value=2.7e+02 Score=21.91 Aligned_cols=39 Identities=10% Similarity=0.124 Sum_probs=33.5
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEec
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQ 349 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~ 349 (424)
...++.++||+.++++ ..-+-..|.+|...|.|.-.-+.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~~Le~~glv~r~~~~ 86 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLRELERGGLIVRHADP 86 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEC--
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCEeeCCCC
Confidence 5689999999999998 78899999999999999876554
No 359
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.60 E-value=88 Score=23.96 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=32.0
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
-|+..+|+++++++ ...+-.+|-.|...|.|...-+
T Consensus 36 gi~qkeLa~~~~l~-~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 36 GIWSRDVRYKSNLP-LTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp CEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEECC
T ss_pred CcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecC
Confidence 58999999999998 7889999999999999985444
No 360
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=23.51 E-value=75 Score=27.10 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=35.8
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++..+||..+|++ .+.+-.++.++..+|.|. ++ .|.+...+
T Consensus 162 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~--~~--~~~i~i~d 204 (216)
T 4ev0_A 162 FQIRHHELAALAGTS-RETVSRVLHALAEEGVVR--LG--PGTVEVRE 204 (216)
T ss_dssp EECCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 568999999999998 899999999999999996 33 45666654
No 361
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=23.48 E-value=1.2e+02 Score=21.10 Aligned_cols=28 Identities=4% Similarity=0.194 Sum_probs=24.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHH
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQ 339 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~ 339 (424)
.-.|.++||+.+|++ ..-+...+.++..
T Consensus 24 ~g~s~~eIA~~lgis-~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVT-RERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 789999999999998 7888887777654
No 362
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=22.87 E-value=80 Score=30.97 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=7.9
Q ss_pred hhcHHHHHHHHHHHhc
Q 014453 190 QKRFRKALELLHNVVT 205 (424)
Q Consensus 190 ~~~y~~A~~~~~~a~~ 205 (424)
.+++.+|..+|+.|+.
T Consensus 416 ~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 416 ERDYVQAWAWFDTAST 431 (490)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4455555555555544
No 363
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=22.70 E-value=82 Score=26.72 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=29.9
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
.++-.+||..+|++ .+-+-.++.++..+|.|.
T Consensus 167 ~~t~~~iA~~lg~s-r~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCS-RETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE
Confidence 68899999999997 899999999999999986
No 364
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.13 E-value=62 Score=25.36 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHhc-ccCccccHHHHHHHHHHH
Q 014453 182 YGGMIFIGQKRFRKALELLHNVVT-APMSSINAIAVEAYKKYI 223 (424)
Q Consensus 182 Y~G~I~~~~~~y~~A~~~~~~a~~-~P~~~~s~i~~ea~Kk~i 223 (424)
..|--++..++++.|..||..|+. ||+-+ -.+..|++-+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~---~LL~i~q~Tl 64 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ---QLLQVLQQTL 64 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHH---HHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH---HHHHHHHhhC
Confidence 457777888899999999999999 88743 1345666644
No 365
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=22.09 E-value=2.7e+02 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=35.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..+++++||+.++++ ..-+-..|..|...|.+.-.-+ ...+.+..
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~~~~--~r~~~~~~ 88 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVGDRA--GRSIVYSL 88 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEEEEE--TTEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec--CCEEEEEE
Confidence 479999999999998 7889999999999999975433 33444443
No 366
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.06 E-value=87 Score=27.14 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=34.5
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEe
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFL 357 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~ 357 (424)
..++..+||..+|++ .+.+-.++.+|..+|.|. ++ .+.+...
T Consensus 174 ~~~t~~~iA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~ 215 (231)
T 3e97_A 174 LPLGTQDIMARTSSS-RETVSRVLKRLEAHNILE--VS--PRSVTLL 215 (231)
T ss_dssp ECCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EC--SSCEEES
T ss_pred cCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCcEE--ec--CCEEEEe
Confidence 468999999999998 899999999999999996 33 3455554
No 367
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=22.05 E-value=85 Score=27.09 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=34.7
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.++-.+||..+|++ .+.+-..+.+|..+|.|.- + .+.+...+
T Consensus 177 ~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~~--~--~~~i~i~d 218 (227)
T 3d0s_A 177 DLTQEEIAQLVGAS-RETVNKALADFAHRGWIRL--E--GKSVLISD 218 (227)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEE--E--TTEEEESC
T ss_pred CCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEEe--c--CCEEEEcC
Confidence 58999999999998 8999999999999999853 3 45666654
No 368
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.02 E-value=87 Score=26.58 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=35.3
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++-.+||..+|++ .+.+-..+.+|..+|.|. ++ .+.+...+
T Consensus 145 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 187 (202)
T 2zcw_A 145 LKATHDELAAAVGSV-RETVTKVIGELAREGYIR--SG--YGKIQLLD 187 (202)
T ss_dssp EECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred cCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--eC--CCEEEEeC
Confidence 458899999999998 899999999999999986 33 45666654
No 369
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=21.98 E-value=87 Score=27.16 Aligned_cols=43 Identities=9% Similarity=0.264 Sum_probs=35.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.+++-.+||..+|++ .+.+-.++.++..+|.|. ++ .+.+...+
T Consensus 179 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~--~~--~~~i~i~d 221 (232)
T 2gau_A 179 IYLSREELATLSNMT-VSNAIRTLSTFVSERMLA--LD--GKRIKIID 221 (232)
T ss_dssp CCCCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEE--EE--TTEEEESC
T ss_pred cccCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEe--eC--CCEEEEeC
Confidence 468999999999998 899999999999999985 33 45566654
No 370
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=21.78 E-value=1.8e+02 Score=27.56 Aligned_cols=81 Identities=10% Similarity=-0.046 Sum_probs=55.6
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHHHc-----cChHHHHhccccccccccCchh-hHHHHHHHHHHHHhhhcHHHHHH
Q 014453 125 MLTAIRKIQSSTEHLTTLHPEFLQLCLLA-----KCYKAGLSVLEDDIYEINLPRD-FFLYCYYGGMIFIGQKRFRKALE 198 (424)
Q Consensus 125 L~~A~~rl~~~~~~lT~~h~~l~rlcL~~-----~~y~~Al~il~~~i~~~~~~~~-~l~Y~YY~G~I~~~~~~y~~A~~ 198 (424)
+..|+ .++|+. .--+.|..+-.++... ++.+.|...+++-+- ++ |.. ...+++|+--..-..+++.+|.+
T Consensus 186 lerAl-eLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-Ln-P~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 186 LERAC-DLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-YC-SAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHH-HHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-HC-CTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred HHHHH-HhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-hC-CCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 45554 577762 1235788888888884 899999888888532 22 443 45555555444444699999999
Q ss_pred HHHHHhcccCc
Q 014453 199 LLHNVVTAPMS 209 (424)
Q Consensus 199 ~~~~a~~~P~~ 209 (424)
+|+.|+.+|..
T Consensus 262 ~L~kAL~a~p~ 272 (301)
T 3u64_A 262 ALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCGG
T ss_pred HHHHHHcCCCC
Confidence 99999997664
No 371
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=21.67 E-value=1.5e+02 Score=25.29 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCC-CEEEE
Q 014453 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKD-GMVRF 356 (424)
Q Consensus 299 ~r~~I~~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~-g~v~F 356 (424)
++..|..+-+ .-..|..+|++.+|++ =..|..++--+-++|.+. ++-..+ .++..
T Consensus 12 rk~~ILE~Lk-~G~~~t~~Iak~LGlS-hg~aq~~Ly~LeREG~V~-~Vk~GK~ayw~L 67 (165)
T 2vxz_A 12 RLRDILALLA-DGCKTTSLIQQRLGLS-HGRAKALIYVLEKEGRVT-RVAFGNVALVCL 67 (165)
T ss_dssp HHHHHHHHHT-TCCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSCE-EEEETTEEEEES
T ss_pred HHHHHHHHHH-hCCccHHHHHHHhCCc-HHHHHHHHHHHHhcCceE-EEEEccEEEEEe
Confidence 4566777777 8999999999999998 789999999999999997 444433 34444
No 372
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=21.57 E-value=88 Score=27.58 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=35.4
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEecC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLED 359 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~~ 359 (424)
..++-.+||..+|++ .+-+-.++.++..+|.|. ++ .|-+...+.
T Consensus 192 ~~lt~~~lA~~lG~s-r~tvsR~l~~L~~~GlI~--~~--~~~i~I~d~ 235 (243)
T 3la7_A 192 LKLSHQAIAEAIGST-RVTVTRLLGDLREKKMIS--IH--KKKITVHKP 235 (243)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEECC-
T ss_pred ccCCHHHHHHHHCCc-HHHHHHHHHHHHHCCCEE--Ec--CCEEEECCH
Confidence 467889999999998 899999999999999997 33 456665543
No 373
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.47 E-value=88 Score=26.96 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=34.0
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.++-.+||..+|++ .+-+-.++.+|..+|.|. ++ .+-+...+
T Consensus 187 ~lt~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCS-REMAGRVLKKLQADGLLH--AR--GKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE--EE--TTEEEEEC
T ss_pred CCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEE--EC--CCEEEEee
Confidence 57899999999998 899999999999999996 33 34454443
No 374
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.46 E-value=88 Score=27.71 Aligned_cols=50 Identities=10% Similarity=0.152 Sum_probs=38.2
Q ss_pred HHHhhhhcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 305 RLTQTYLTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 305 ~l~~~Ys~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
.+...-..++.++||+.++++ ..-+-..|.+|..+|.|.-. +.+.|...+
T Consensus 13 ~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~ 62 (214)
T 3hrs_A 13 ELGTRHNKITNKEIAQLMQVS-PPAVTEMMKKLLAEELLIKD---KKAGYLLTD 62 (214)
T ss_dssp HTTSSCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred HHHhcCCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEEe---cCCCeEECH
Confidence 334444579999999999998 78899999999999998643 235566554
No 375
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=21.32 E-value=1.6e+02 Score=25.28 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=29.5
Q ss_pred cccHHHHHHHhCCCCHHHHHHHHHHhHHcCc-eEE
Q 014453 312 TLSLQDIANTVQLNSSKEAEMHVLQMIQDGE-IFA 345 (424)
Q Consensus 312 ~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~-I~A 345 (424)
.+|.++||+.+|++ ..-+..-+..|-..|. |.+
T Consensus 36 ~~s~~eLa~~l~vS-~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 36 PVSGAQLAEELSVS-RQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp CBCHHHHHHHHTSC-HHHHHHHHHHHHHHTCCCEE
T ss_pred CcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 49999999999998 7889999999999998 764
No 376
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=21.27 E-value=91 Score=26.79 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=34.3
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++-.+||..+|++ .+.+-.++.++..+|.|. .+ ..+.+...+
T Consensus 166 ~~~t~~~lA~~lg~s-r~tvsR~l~~l~~~g~I~--~~-~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTT-RQTVSVLLNDFKKMGILE--RV-NQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEE--ES-SSSEEEESC
T ss_pred ccCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCEE--Ec-CCCEEEEcC
Confidence 468899999999998 899999999999999874 21 034555543
No 377
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=21.21 E-value=1.7e+02 Score=25.74 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=30.2
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceE
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIF 344 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~ 344 (424)
..++-.+||..+|++ .+-+-.++.++..+|.|.
T Consensus 176 ~~~t~~~iA~~lG~s-r~tvsR~l~~L~~~g~I~ 208 (250)
T 3e6c_C 176 MPLSQKSIGEITGVH-HVTVSRVLASLKRENILD 208 (250)
T ss_dssp CCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEE
T ss_pred CCCCHHHHHHHhCCc-HHHHHHHHHHHHHCCCeE
Confidence 368999999999998 899999999999999985
No 378
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=20.79 E-value=76 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=34.7
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEec
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFLE 358 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~~ 358 (424)
..++-.+||..+|++ .+.+-..+.++..+|.|. ++ .+.+...+
T Consensus 138 ~~~t~~~lA~~lg~s-r~tvsR~l~~L~~~g~I~--~~--~~~i~i~d 180 (195)
T 3b02_A 138 VTVSHEEIADATASI-RESVSKVLADLRREGLIA--TA--YRRVYLLD 180 (195)
T ss_dssp EECCHHHHHHTTTSC-HHHHHHHHHHHHHHTSEE--EE--TTEEEECC
T ss_pred ccCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEE--ec--CCEEEEeC
Confidence 358899999999998 899999999999999985 33 35566554
No 379
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=20.77 E-value=1.6e+02 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=35.4
Q ss_pred hhcc-cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEE
Q 014453 310 YLTL-SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRF 356 (424)
Q Consensus 310 Ys~I-sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F 356 (424)
=.++ |..++|+.+|++ ..-+..-+..+..+|.|.. .+..|+.+-
T Consensus 25 G~~LPse~~La~~~gvS-r~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRIN-PATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp TSCBCCHHHHHHHTTCC-HHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred CCcCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 3578 899999999997 8889999999999999863 445666543
No 380
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=20.54 E-value=2.7e+02 Score=22.53 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=28.0
Q ss_pred hcccHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCC
Q 014453 311 LTLSLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDG 352 (424)
Q Consensus 311 s~Isl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g 352 (424)
..++.++||+.++++ ..-+-.+|..|...|.|. +.+..++
T Consensus 51 ~~~t~~eLa~~l~~~-~~tvsr~v~~Le~~glVr-~~~~~Dr 90 (148)
T 4fx0_A 51 IDLTMSELAARIGVE-RTTLTRNLEVMRRDGLVR-VMAGADA 90 (148)
T ss_dssp ---CHHHHHHHHTCC-HHHHHHHHHHHHHTTSBC--------
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEE-eeCCCCC
Confidence 358999999999998 788889999999999995 4454443
No 381
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=20.49 E-value=75 Score=26.16 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.7
Q ss_pred hhcccHHHHHHHhCCCCHHHHHHHHH
Q 014453 310 YLTLSLQDIANTVQLNSSKEAEMHVL 335 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~l~~~~eaE~~v~ 335 (424)
|-+.++++|+..++++ .+++|.++.
T Consensus 37 YL~~~l~eia~~l~~~-~~eve~vL~ 61 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCS-VEELEKVRQ 61 (130)
T ss_dssp SBSSCHHHHHHHTTCC-HHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCC-HHHHHHHHH
Confidence 7889999999999987 899987654
No 382
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=20.46 E-value=94 Score=24.19 Aligned_cols=47 Identities=15% Similarity=0.036 Sum_probs=35.8
Q ss_pred hhcc-cHHHHHHHhCCCCHHHHHHHHHHhHHcCceEEEEecCCCEEEEe
Q 014453 310 YLTL-SLQDIANTVQLNSSKEAEMHVLQMIQDGEIFATINQKDGMVRFL 357 (424)
Q Consensus 310 Ys~I-sl~~Ia~~l~l~~~~eaE~~v~~mI~~G~I~A~Id~~~g~v~F~ 357 (424)
=.++ +..+||+.+|++ ..-+..-+..+..+|.|...-....|+....
T Consensus 40 g~~lps~~eLa~~lgVS-r~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 40 NEGLLVASKIADRVGIT-RSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp TEEEECHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred CCcCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 3566 999999999997 8889999999999999875431124655543
No 383
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.34 E-value=1e+02 Score=27.52 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=12.7
Q ss_pred HHHHhhhcHHHHHHHHHHHhc
Q 014453 185 MIFIGQKRFRKALELLHNVVT 205 (424)
Q Consensus 185 ~I~~~~~~y~~A~~~~~~a~~ 205 (424)
.|.+..|+|++|.+-|...++
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 455566666666666666666
No 384
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=20.16 E-value=86 Score=25.03 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=37.6
Q ss_pred HHHHHHHccChHHHHhccccccccccCchhhHHHHHHHHHHHHh----hhcHHHHHHHHHHHhcc
Q 014453 146 FLQLCLLAKCYKAGLSVLEDDIYEINLPRDFFLYCYYGGMIFIG----QKRFRKALELLHNVVTA 206 (424)
Q Consensus 146 l~rlcL~~~~y~~Al~il~~~i~~~~~~~~~l~Y~YY~G~I~~~----~~~y~~A~~~~~~a~~~ 206 (424)
+-.++..-+.+++|...+.+..- .....=.|..|.+|.. .+++.+|.++|+.|...
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~-----~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE-----LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 33444444556667666666432 1233445677888877 89999999999999874
No 385
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=20.05 E-value=2.5e+02 Score=20.11 Aligned_cols=38 Identities=11% Similarity=0.272 Sum_probs=31.9
Q ss_pred hhcccHHHHHHHhC----CCCHHHHHHHHHHhHHcCceEEEEe
Q 014453 310 YLTLSLQDIANTVQ----LNSSKEAEMHVLQMIQDGEIFATIN 348 (424)
Q Consensus 310 Ys~Isl~~Ia~~l~----l~~~~eaE~~v~~mI~~G~I~A~Id 348 (424)
...++..+|++.++ ++ ..-+-.+|..|...|.|.-.-+
T Consensus 21 ~~~~t~~ei~~~l~~~~~~s-~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 21 HSSINTNEVIKELSKTSTWS-PKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp SSSEEHHHHHHHHHHHSCCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCHHHHHHHHhhcCCcc-HHHHHHHHHHHHHCCCeEEEec
Confidence 45799999999997 44 6788999999999999986544
Done!