Query 014455
Match_columns 424
No_of_seqs 365 out of 1472
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:17:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02958 diacylglycerol kinase 100.0 9.6E-83 2.1E-87 657.3 46.4 418 2-424 4-421 (481)
2 PLN02204 diacylglycerol kinase 100.0 1.5E-59 3.3E-64 482.9 39.4 411 5-424 17-559 (601)
3 KOG1116 Sphingosine kinase, in 100.0 3.9E-59 8.5E-64 470.8 26.0 319 105-424 175-528 (579)
4 KOG1115 Ceramide kinase [Lipid 100.0 1.3E-51 2.8E-56 396.0 19.6 321 74-423 122-462 (516)
5 PRK11914 diacylglycerol kinase 100.0 1.3E-48 2.7E-53 384.5 28.6 255 109-423 8-266 (306)
6 PRK13059 putative lipid kinase 100.0 2.1E-46 4.6E-51 366.6 28.8 251 109-423 1-254 (295)
7 PRK13337 putative lipid kinase 100.0 1.2E-46 2.6E-51 370.0 26.7 253 109-423 1-255 (304)
8 PRK13055 putative lipid kinase 100.0 3.1E-46 6.7E-51 371.3 27.3 254 109-423 2-260 (334)
9 PRK13057 putative lipid kinase 100.0 5.1E-45 1.1E-49 355.7 27.2 244 113-423 1-246 (287)
10 PRK00861 putative lipid kinase 100.0 1.8E-44 3.9E-49 354.0 26.1 250 109-423 2-258 (300)
11 COG1597 LCB5 Sphingosine kinas 100.0 2E-44 4.3E-49 352.3 24.9 254 108-423 1-257 (301)
12 PRK13054 lipid kinase; Reviewe 100.0 7.8E-44 1.7E-48 349.4 26.7 252 108-423 2-255 (300)
13 TIGR03702 lip_kinase_YegS lipi 100.0 1E-43 2.2E-48 347.5 26.5 247 111-423 1-249 (293)
14 TIGR00147 lipid kinase, YegS/R 100.0 4E-43 8.7E-48 343.3 28.4 253 109-423 1-256 (293)
15 PRK12361 hypothetical protein; 100.0 2.2E-37 4.7E-42 327.0 27.5 254 107-423 240-503 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 6E-27 1.3E-31 201.9 13.6 126 111-246 1-128 (130)
17 smart00046 DAGKc Diacylglycero 99.9 2E-22 4.2E-27 172.3 10.1 106 113-231 1-108 (124)
18 KOG4435 Predicted lipid kinase 99.9 5.4E-22 1.2E-26 191.5 13.0 180 107-291 58-244 (535)
19 KOG1169 Diacylglycerol kinase 99.8 1.6E-19 3.5E-24 186.1 15.6 161 109-274 271-453 (634)
20 KOG0782 Predicted diacylglycer 99.7 1.7E-17 3.7E-22 166.0 13.2 157 107-273 363-538 (1004)
21 smart00045 DAGKa Diacylglycero 99.1 5.4E-11 1.2E-15 106.2 5.0 113 256-423 4-140 (160)
22 PRK03708 ppnK inorganic polyph 99.1 6.6E-10 1.4E-14 107.6 11.5 112 110-238 1-115 (277)
23 PRK02645 ppnK inorganic polyph 98.9 4.3E-09 9.2E-14 103.5 10.9 116 108-238 2-118 (305)
24 COG3199 Predicted inorganic po 98.6 2.6E-07 5.6E-12 89.8 9.6 73 150-235 84-157 (355)
25 PRK01231 ppnK inorganic polyph 98.4 2.2E-06 4.7E-11 83.9 10.4 112 109-237 4-120 (295)
26 PRK03378 ppnK inorganic polyph 98.3 1.2E-06 2.6E-11 85.5 7.5 112 108-237 4-121 (292)
27 KOG1170 Diacylglycerol kinase 98.1 1.4E-06 3.1E-11 91.7 2.4 127 110-245 195-323 (1099)
28 PRK03372 ppnK inorganic polyph 98.0 3.6E-05 7.9E-10 75.6 9.3 115 107-238 3-131 (306)
29 PRK02155 ppnK NAD(+)/NADH kina 97.9 5.9E-05 1.3E-09 73.8 10.4 112 109-237 5-121 (291)
30 PF01513 NAD_kinase: ATP-NAD k 97.9 1.1E-05 2.3E-10 78.9 4.4 112 111-238 1-135 (285)
31 PRK02649 ppnK inorganic polyph 97.7 0.00018 3.9E-09 70.7 9.0 112 109-237 1-126 (305)
32 PRK04539 ppnK inorganic polyph 97.6 0.00041 8.8E-09 68.0 10.6 113 108-237 4-126 (296)
33 PRK14077 pnk inorganic polypho 97.6 0.00047 1E-08 67.3 10.4 110 108-236 9-121 (287)
34 PRK14076 pnk inorganic polypho 97.6 0.00067 1.5E-08 72.5 12.3 132 88-237 271-406 (569)
35 PF00609 DAGK_acc: Diacylglyce 97.6 0.00027 5.9E-09 63.0 7.7 100 253-395 2-123 (161)
36 PRK01911 ppnK inorganic polyph 97.5 0.00076 1.6E-08 66.0 10.5 111 110-237 1-122 (292)
37 PRK03501 ppnK inorganic polyph 97.5 0.00049 1.1E-08 66.3 8.8 96 110-237 3-99 (264)
38 PLN02935 Bifunctional NADH kin 97.5 0.00052 1.1E-08 70.9 9.3 116 105-237 190-320 (508)
39 PRK04885 ppnK inorganic polyph 97.4 0.00087 1.9E-08 64.6 9.6 94 111-237 2-95 (265)
40 PLN02727 NAD kinase 97.3 0.0014 3E-08 71.9 10.4 146 60-237 641-801 (986)
41 PRK00561 ppnK inorganic polyph 97.0 0.0096 2.1E-07 57.1 11.7 100 110-246 1-101 (259)
42 PRK14075 pnk inorganic polypho 96.8 0.018 3.9E-07 55.4 12.5 97 110-238 1-97 (256)
43 PRK01185 ppnK inorganic polyph 96.7 0.0044 9.4E-08 60.0 7.4 106 110-237 1-107 (271)
44 PLN02929 NADH kinase 96.7 0.0086 1.9E-07 58.6 9.2 92 131-238 37-140 (301)
45 PRK02231 ppnK inorganic polyph 95.9 0.022 4.9E-07 55.1 6.9 91 131-236 3-100 (272)
46 PF13685 Fe-ADH_2: Iron-contai 95.5 0.078 1.7E-06 50.7 9.2 100 101-213 12-116 (250)
47 PF11711 Tim54: Inner membrane 95.3 0.061 1.3E-06 54.3 8.0 68 90-157 44-117 (382)
48 cd08186 Fe-ADH8 Iron-containin 95.2 0.18 3.9E-06 51.4 11.3 101 109-213 26-145 (383)
49 cd08181 PPD-like 1,3-propanedi 95.1 0.21 4.6E-06 50.3 11.4 100 110-213 26-142 (357)
50 PRK04761 ppnK inorganic polyph 95.1 0.14 3E-06 48.9 9.3 61 165-237 24-84 (246)
51 cd08194 Fe-ADH6 Iron-containin 94.9 0.3 6.5E-06 49.6 11.8 91 110-205 24-130 (375)
52 cd08176 LPO Lactadehyde:propan 94.8 0.28 6.1E-06 49.8 11.4 97 110-211 29-143 (377)
53 cd08549 G1PDH_related Glycerol 94.7 0.35 7.6E-06 48.2 11.4 85 109-206 24-113 (332)
54 KOG4180 Predicted kinase [Gene 94.7 0.033 7.1E-07 54.1 3.8 97 126-240 73-171 (395)
55 COG0061 nadF NAD kinase [Coenz 94.6 0.24 5.2E-06 48.3 9.9 111 111-238 2-114 (281)
56 PRK10624 L-1,2-propanediol oxi 94.6 0.43 9.3E-06 48.6 11.9 97 110-211 31-147 (382)
57 cd08197 DOIS 2-deoxy-scyllo-in 94.4 0.55 1.2E-05 47.3 12.1 91 110-210 24-125 (355)
58 cd08187 BDH Butanol dehydrogen 94.3 0.38 8.3E-06 48.9 10.9 96 110-209 29-142 (382)
59 cd08195 DHQS Dehydroquinate sy 94.1 0.45 9.8E-06 47.7 10.9 89 107-205 22-119 (345)
60 cd08185 Fe-ADH1 Iron-containin 94.1 0.55 1.2E-05 47.7 11.6 99 110-212 26-147 (380)
61 cd08171 GlyDH-like2 Glycerol d 94.0 0.33 7.1E-06 48.7 9.7 84 110-205 23-110 (345)
62 PRK00843 egsA NAD(P)-dependent 93.9 0.69 1.5E-05 46.5 11.7 87 109-208 34-122 (350)
63 cd08550 GlyDH-like Glycerol_de 93.8 0.41 8.8E-06 48.1 9.9 84 110-205 23-109 (349)
64 cd08173 Gro1PDH Sn-glycerol-1- 93.7 0.63 1.4E-05 46.5 10.9 86 110-208 26-113 (339)
65 TIGR02638 lactal_redase lactal 93.6 0.79 1.7E-05 46.6 11.7 94 110-208 30-143 (379)
66 PRK00002 aroB 3-dehydroquinate 93.3 0.95 2.1E-05 45.6 11.7 87 109-205 31-126 (358)
67 cd08199 EEVS 2-epi-5-epi-valio 93.3 0.7 1.5E-05 46.6 10.6 85 108-205 25-122 (354)
68 cd08191 HHD 6-hydroxyhexanoate 93.1 0.84 1.8E-05 46.5 11.0 92 110-206 23-130 (386)
69 cd08188 Fe-ADH4 Iron-containin 93.0 1.2 2.7E-05 45.1 12.1 95 110-209 29-141 (377)
70 PRK09860 putative alcohol dehy 92.9 1.1 2.3E-05 45.7 11.3 99 110-213 32-148 (383)
71 PRK09423 gldA glycerol dehydro 92.8 0.75 1.6E-05 46.5 10.1 84 110-205 30-116 (366)
72 PRK10586 putative oxidoreducta 92.6 1.3 2.9E-05 44.7 11.4 98 101-212 27-125 (362)
73 cd08178 AAD_C C-terminal alcoh 92.5 0.91 2E-05 46.5 10.3 72 109-185 21-96 (398)
74 cd08172 GlyDH-like1 Glycerol d 92.3 0.76 1.7E-05 46.1 9.3 85 110-206 24-109 (347)
75 cd08174 G1PDH-like Glycerol-1- 92.1 1.3 2.8E-05 44.1 10.7 84 110-209 26-111 (331)
76 TIGR01357 aroB 3-dehydroquinat 92.1 1.6 3.5E-05 43.7 11.3 87 109-205 20-115 (344)
77 cd08170 GlyDH Glycerol dehydro 91.9 1 2.2E-05 45.2 9.7 84 110-205 23-109 (351)
78 cd08551 Fe-ADH iron-containing 91.7 1.6 3.5E-05 44.1 10.9 93 110-207 24-132 (370)
79 KOG2178 Predicted sugar kinase 91.6 0.31 6.8E-06 48.8 5.4 58 165-236 167-225 (409)
80 cd08193 HVD 5-hydroxyvalerate 91.2 2.3 5.1E-05 43.1 11.5 95 110-209 27-137 (376)
81 cd08192 Fe-ADH7 Iron-containin 90.9 2.5 5.5E-05 42.7 11.4 72 110-186 25-100 (370)
82 PF10254 Pacs-1: PACS-1 cytoso 90.8 1.5 3.1E-05 44.9 9.4 108 97-216 3-127 (414)
83 cd08190 HOT Hydroxyacid-oxoaci 90.7 3.2 6.9E-05 42.8 12.0 68 110-182 24-95 (414)
84 cd08182 HEPD Hydroxyethylphosp 90.5 3.6 7.9E-05 41.5 12.1 90 110-207 24-133 (367)
85 cd07766 DHQ_Fe-ADH Dehydroquin 90.4 2.7 5.9E-05 41.7 11.0 91 109-210 23-117 (332)
86 cd08175 G1PDH Glycerol-1-phosp 90.3 3 6.4E-05 41.8 11.2 85 110-207 24-114 (348)
87 cd08179 NADPH_BDH NADPH-depend 90.2 2 4.3E-05 43.6 9.9 98 110-211 24-142 (375)
88 COG1454 EutG Alcohol dehydroge 90.1 4.8 0.0001 40.9 12.4 123 80-215 8-148 (377)
89 cd08180 PDD 1,3-propanediol de 90.0 2 4.3E-05 42.8 9.6 93 109-209 22-123 (332)
90 PRK15454 ethanol dehydrogenase 89.3 4.4 9.5E-05 41.5 11.6 99 110-212 50-165 (395)
91 PLN02834 3-dehydroquinate synt 89.2 2.6 5.6E-05 43.7 9.9 85 109-206 100-198 (433)
92 COG0371 GldA Glycerol dehydrog 88.9 3.1 6.8E-05 41.9 9.9 92 110-213 31-124 (360)
93 PF00731 AIRC: AIR carboxylase 88.9 2.5 5.4E-05 37.2 8.1 67 121-188 8-78 (150)
94 PRK15138 aldehyde reductase; P 86.6 5.7 0.00012 40.5 10.5 96 110-211 30-146 (387)
95 KOG1170 Diacylglycerol kinase 85.5 0.73 1.6E-05 50.0 3.4 34 360-393 688-730 (1099)
96 cd08183 Fe-ADH2 Iron-containin 85.2 8.7 0.00019 38.9 11.0 68 110-185 23-93 (374)
97 PRK14021 bifunctional shikimat 84.5 7.5 0.00016 41.5 10.6 70 131-205 225-303 (542)
98 cd08177 MAR Maleylacetate redu 84.4 3.1 6.8E-05 41.5 7.3 84 110-205 24-109 (337)
99 PRK06203 aroB 3-dehydroquinate 84.3 6 0.00013 40.5 9.3 90 109-205 42-145 (389)
100 cd08198 DHQS-like2 Dehydroquin 83.8 6.1 0.00013 40.1 9.1 91 109-206 30-134 (369)
101 cd08184 Fe-ADH3 Iron-containin 83.6 16 0.00034 36.8 11.8 94 110-212 26-140 (347)
102 cd08169 DHQ-like Dehydroquinat 83.5 11 0.00024 37.8 10.8 92 109-210 23-124 (344)
103 cd06167 LabA_like LabA_like pr 83.4 19 0.00041 30.9 11.0 75 109-189 39-122 (149)
104 PRK11780 isoprenoid biosynthes 83.2 6.2 0.00013 36.9 8.3 18 161-178 80-97 (217)
105 cd08189 Fe-ADH5 Iron-containin 81.6 6.9 0.00015 39.6 8.6 70 110-184 27-100 (374)
106 PF00465 Fe-ADH: Iron-containi 81.6 2.9 6.3E-05 42.2 5.8 95 111-209 23-133 (366)
107 cd01536 PBP1_ABC_sugar_binding 81.5 9.8 0.00021 35.2 9.1 85 112-205 2-88 (267)
108 PRK06756 flavodoxin; Provision 81.4 7.6 0.00016 33.6 7.7 87 110-205 2-91 (148)
109 cd06295 PBP1_CelR Ligand bindi 81.3 16 0.00035 34.3 10.7 66 131-205 30-95 (275)
110 TIGR01162 purE phosphoribosyla 81.1 7.2 0.00016 34.5 7.3 69 130-207 14-86 (156)
111 PRK05282 (alpha)-aspartyl dipe 80.5 9.3 0.0002 36.2 8.4 74 93-178 18-91 (233)
112 TIGR03405 Phn_Fe-ADH phosphona 80.4 6.4 0.00014 39.6 7.8 97 110-213 24-144 (355)
113 PLN02948 phosphoribosylaminoim 79.0 30 0.00065 37.3 12.8 118 77-208 373-499 (577)
114 PRK06703 flavodoxin; Provision 77.8 9.9 0.00021 32.9 7.3 84 110-207 2-92 (151)
115 TIGR00288 conserved hypothetic 77.7 43 0.00093 29.8 11.2 102 96-214 43-148 (160)
116 cd06310 PBP1_ABC_sugar_binding 77.5 14 0.00031 34.6 8.9 84 111-203 1-88 (273)
117 PF03575 Peptidase_S51: Peptid 77.1 3.5 7.6E-05 36.1 4.2 46 130-178 2-47 (154)
118 cd00764 Eukaryotic_PFK Phospho 76.3 15 0.00033 40.8 9.6 101 109-213 419-524 (762)
119 cd06312 PBP1_ABC_sugar_binding 75.8 17 0.00038 34.1 9.0 66 131-203 20-88 (271)
120 TIGR02483 PFK_mixed phosphofru 75.5 5 0.00011 39.9 5.3 92 111-213 32-133 (324)
121 cd06341 PBP1_ABC_ligand_bindin 75.2 35 0.00077 33.3 11.4 99 83-190 111-212 (341)
122 cd01391 Periplasmic_Binding_Pr 75.2 19 0.0004 32.7 8.9 60 129-188 18-80 (269)
123 PTZ00286 6-phospho-1-fructokin 74.9 6 0.00013 41.2 5.9 115 110-233 120-240 (459)
124 cd06268 PBP1_ABC_transporter_L 74.7 63 0.0014 30.0 12.6 97 85-189 115-213 (298)
125 cd00763 Bacterial_PFK Phosphof 74.5 9.9 0.00022 37.7 7.1 93 110-213 31-131 (317)
126 TIGR02482 PFKA_ATP 6-phosphofr 74.1 9.9 0.00021 37.4 6.9 93 111-213 31-131 (301)
127 PF13458 Peripla_BP_6: Peripla 73.9 29 0.00063 33.7 10.4 102 81-190 111-214 (343)
128 PRK03202 6-phosphofructokinase 72.2 11 0.00023 37.6 6.6 96 110-213 32-132 (320)
129 PRK13805 bifunctional acetalde 71.9 36 0.00078 38.6 11.6 73 109-186 480-558 (862)
130 cd06282 PBP1_GntR_like_2 Ligan 71.7 32 0.0007 31.8 9.7 66 131-203 19-85 (266)
131 PRK09271 flavodoxin; Provision 70.6 12 0.00025 33.1 5.9 66 110-181 1-69 (160)
132 cd06278 PBP1_LacI_like_2 Ligan 70.0 38 0.00082 31.4 9.8 68 131-206 19-86 (266)
133 PRK06830 diphosphate--fructose 69.8 8.8 0.00019 39.8 5.6 96 110-213 113-217 (443)
134 PF01220 DHquinase_II: Dehydro 69.1 26 0.00057 30.4 7.5 44 129-173 30-73 (140)
135 cd06305 PBP1_methylthioribose_ 68.7 33 0.00072 32.0 9.1 66 131-203 19-86 (273)
136 PF01936 NYN: NYN domain; Int 68.6 22 0.00047 30.1 7.1 59 131-189 50-118 (146)
137 PLN02564 6-phosphofructokinase 68.1 10 0.00022 39.8 5.7 96 110-213 120-221 (484)
138 PRK10653 D-ribose transporter 67.6 47 0.001 31.7 10.1 86 110-204 27-114 (295)
139 PLN02335 anthranilate synthase 67.2 22 0.00047 33.3 7.3 66 104-182 13-78 (222)
140 cd01537 PBP1_Repressors_Sugar_ 67.2 37 0.00081 31.0 9.0 73 129-208 17-90 (264)
141 cd06349 PBP1_ABC_ligand_bindin 67.1 84 0.0018 30.7 12.0 77 109-189 135-213 (340)
142 PF04392 ABC_sub_bind: ABC tra 66.4 41 0.00089 32.6 9.4 89 91-187 116-204 (294)
143 PRK14071 6-phosphofructokinase 66.3 16 0.00034 37.0 6.5 53 155-214 96-148 (360)
144 cd06320 PBP1_allose_binding Pe 66.3 33 0.00071 32.2 8.6 83 112-203 2-88 (275)
145 cd06318 PBP1_ABC_sugar_binding 66.0 41 0.00088 31.6 9.2 66 131-203 19-86 (282)
146 cd07025 Peptidase_S66 LD-Carbo 66.0 15 0.00034 35.6 6.3 63 115-179 3-76 (282)
147 PRK07308 flavodoxin; Validated 65.7 28 0.00061 29.9 7.3 84 110-207 2-92 (146)
148 PRK06555 pyrophosphate--fructo 64.7 18 0.00039 37.1 6.6 59 153-213 99-157 (403)
149 PRK11104 hemG protoporphyrinog 64.7 14 0.0003 33.2 5.3 86 110-207 1-88 (177)
150 COG3340 PepE Peptidase E [Amin 64.6 24 0.00052 32.9 6.8 65 109-180 32-97 (224)
151 cd00363 PFK Phosphofructokinas 64.6 13 0.00028 37.3 5.5 95 110-212 31-136 (338)
152 PRK05637 anthranilate synthase 64.5 32 0.00068 31.9 7.8 60 109-182 1-60 (208)
153 cd01538 PBP1_ABC_xylose_bindin 64.2 46 0.001 31.7 9.3 68 131-205 19-88 (288)
154 PF00365 PFK: Phosphofructokin 64.1 7.2 0.00016 38.0 3.5 52 155-213 81-132 (282)
155 cd06319 PBP1_ABC_sugar_binding 64.1 45 0.00099 31.1 9.1 66 131-203 19-86 (277)
156 cd06300 PBP1_ABC_sugar_binding 63.7 43 0.00093 31.3 8.8 67 131-204 19-92 (272)
157 cd06289 PBP1_MalI_like Ligand- 63.2 50 0.0011 30.6 9.1 79 117-203 6-85 (268)
158 PRK06774 para-aminobenzoate sy 62.2 28 0.00061 31.5 7.0 49 129-182 11-59 (191)
159 PRK05568 flavodoxin; Provision 62.0 24 0.00053 29.9 6.2 56 109-174 1-56 (142)
160 cd01743 GATase1_Anthranilate_S 61.6 31 0.00068 30.9 7.1 48 129-181 10-57 (184)
161 cd06296 PBP1_CatR_like Ligand- 61.2 74 0.0016 29.5 9.9 81 113-203 3-84 (270)
162 CHL00101 trpG anthranilate syn 61.1 48 0.001 30.0 8.3 48 129-181 11-58 (190)
163 cd06299 PBP1_LacI_like_13 Liga 60.8 75 0.0016 29.4 9.9 65 131-203 19-84 (265)
164 cd01539 PBP1_GGBP Periplasmic 60.7 53 0.0012 31.7 9.1 66 131-203 19-88 (303)
165 PRK11303 DNA-binding transcrip 60.7 75 0.0016 30.7 10.2 87 108-203 60-147 (328)
166 cd06301 PBP1_rhizopine_binding 60.5 54 0.0012 30.6 8.9 66 131-203 19-87 (272)
167 PRK10014 DNA-binding transcrip 59.8 88 0.0019 30.5 10.6 87 108-203 63-150 (342)
168 cd01545 PBP1_SalR Ligand-bindi 59.6 70 0.0015 29.6 9.5 66 131-203 19-86 (270)
169 COG1433 Uncharacterized conser 59.5 55 0.0012 27.7 7.6 72 109-189 36-107 (121)
170 PRK14072 6-phosphofructokinase 59.4 25 0.00054 36.3 6.7 60 153-214 90-149 (416)
171 cd06267 PBP1_LacI_sugar_bindin 59.2 71 0.0015 29.2 9.3 67 129-203 17-84 (264)
172 cd06313 PBP1_ABC_sugar_binding 59.1 42 0.00092 31.6 7.9 66 131-203 19-86 (272)
173 cd03147 GATase1_Ydr533c_like T 59.1 41 0.0009 31.7 7.6 38 163-207 91-137 (231)
174 PF00763 THF_DHG_CYH: Tetrahyd 59.1 65 0.0014 26.8 8.0 79 90-172 7-93 (117)
175 cd06273 PBP1_GntR_like_1 This 58.7 87 0.0019 29.0 10.0 82 112-203 2-84 (268)
176 cd06303 PBP1_LuxPQ_Quorum_Sens 58.7 61 0.0013 30.6 9.0 59 131-189 20-83 (280)
177 smart00115 CASc Caspase, inter 58.6 44 0.00095 31.6 7.8 63 107-169 5-75 (241)
178 TIGR00640 acid_CoA_mut_C methy 58.5 53 0.0011 28.1 7.5 71 113-188 5-75 (132)
179 cd06304 PBP1_BmpA_like Peripla 58.4 66 0.0014 30.1 9.1 46 131-176 21-66 (260)
180 cd06317 PBP1_ABC_sugar_binding 58.3 81 0.0018 29.3 9.7 60 130-189 19-80 (275)
181 cd08196 DHQS-like1 Dehydroquin 58.3 63 0.0014 32.4 9.2 81 110-205 20-110 (346)
182 cd07062 Peptidase_S66_mccF_lik 58.2 27 0.00058 34.4 6.4 66 113-179 3-80 (308)
183 cd06324 PBP1_ABC_sugar_binding 58.1 71 0.0015 30.7 9.5 67 131-204 20-89 (305)
184 PRK05670 anthranilate synthase 57.9 22 0.00048 32.1 5.4 48 129-181 11-58 (189)
185 TIGR02417 fruct_sucro_rep D-fr 57.8 1E+02 0.0022 29.8 10.6 87 108-203 59-146 (327)
186 cd06345 PBP1_ABC_ligand_bindin 57.8 1.9E+02 0.0041 28.2 13.4 79 107-189 142-222 (344)
187 COG1646 Predicted phosphate-bi 57.6 31 0.00067 32.5 6.3 77 131-209 5-82 (240)
188 cd06298 PBP1_CcpA_like Ligand- 57.4 93 0.002 28.8 9.9 65 131-203 19-84 (268)
189 cd00764 Eukaryotic_PFK Phospho 57.2 18 0.0004 40.1 5.5 101 110-214 34-160 (762)
190 TIGR00725 conserved hypothetic 57.2 13 0.00028 32.9 3.6 48 153-207 18-65 (159)
191 cd03129 GAT1_Peptidase_E_like 57.1 57 0.0012 30.0 8.1 64 108-177 28-91 (210)
192 TIGR01007 eps_fam capsular exo 57.1 69 0.0015 29.0 8.7 55 97-153 4-58 (204)
193 COG1609 PurR Transcriptional r 57.0 1.8E+02 0.0039 28.8 12.2 66 107-174 56-122 (333)
194 PF00532 Peripla_BP_1: Peripla 57.0 76 0.0017 30.5 9.3 86 111-206 3-88 (279)
195 PRK06895 putative anthranilate 56.8 78 0.0017 28.6 8.9 54 110-178 2-55 (190)
196 PF03358 FMN_red: NADPH-depend 56.4 47 0.001 28.4 7.1 40 110-151 1-41 (152)
197 cd06315 PBP1_ABC_sugar_binding 56.4 87 0.0019 29.6 9.6 66 131-203 20-87 (280)
198 PRK06490 glutamine amidotransf 56.1 15 0.00033 34.8 4.1 61 108-180 6-66 (239)
199 cd01540 PBP1_arabinose_binding 56.0 66 0.0014 30.3 8.7 66 131-203 19-85 (289)
200 cd06333 PBP1_ABC-type_HAAT_lik 55.5 1.9E+02 0.0042 27.6 14.0 78 108-189 132-211 (312)
201 cd06306 PBP1_TorT-like TorT-li 55.4 74 0.0016 29.8 8.9 66 131-203 19-87 (268)
202 cd06270 PBP1_GalS_like Ligand 55.2 1.1E+02 0.0025 28.3 10.1 66 131-204 19-85 (268)
203 TIGR01754 flav_RNR ribonucleot 55.2 34 0.00075 29.2 5.9 86 110-206 1-90 (140)
204 PF07015 VirC1: VirC1 protein; 55.1 44 0.00096 31.6 6.9 98 110-214 1-101 (231)
205 PRK04155 chaperone protein Hch 55.0 36 0.00078 33.3 6.6 17 164-180 145-161 (287)
206 cd06322 PBP1_ABC_sugar_binding 54.9 70 0.0015 29.7 8.6 67 130-203 18-86 (267)
207 cd06323 PBP1_ribose_binding Pe 54.8 69 0.0015 29.6 8.5 66 131-203 19-86 (268)
208 cd04509 PBP1_ABC_transporter_G 54.8 1.8E+02 0.0038 26.9 11.5 77 109-189 136-214 (299)
209 cd03132 GATase1_catalase Type 54.8 36 0.00077 28.9 6.0 66 110-180 2-76 (142)
210 cd06281 PBP1_LacI_like_5 Ligan 54.8 83 0.0018 29.3 9.1 69 131-206 19-88 (269)
211 COG0205 PfkA 6-phosphofructoki 54.4 30 0.00065 34.8 6.1 98 109-213 32-134 (347)
212 PRK07765 para-aminobenzoate sy 54.0 93 0.002 28.8 9.0 48 131-181 14-61 (214)
213 cd06335 PBP1_ABC_ligand_bindin 53.8 1.7E+02 0.0036 28.7 11.5 77 109-189 138-216 (347)
214 PRK06718 precorrin-2 dehydroge 53.6 1.8E+02 0.0039 26.7 10.8 80 136-215 28-136 (202)
215 COG2185 Sbm Methylmalonyl-CoA 53.6 97 0.0021 27.0 8.3 74 108-187 11-84 (143)
216 cd03133 GATase1_ES1 Type 1 glu 53.3 29 0.00064 32.3 5.5 51 161-215 77-142 (213)
217 PRK10355 xylF D-xylose transpo 53.2 1.5E+02 0.0033 29.1 11.1 86 109-203 25-112 (330)
218 cd01744 GATase1_CPSase Small c 52.9 51 0.0011 29.4 6.9 43 133-181 12-54 (178)
219 TIGR02478 6PF1K_euk 6-phosphof 52.6 21 0.00046 39.7 5.1 101 110-213 31-156 (745)
220 PLN02884 6-phosphofructokinase 52.6 38 0.00082 34.9 6.6 99 110-213 85-188 (411)
221 cd03169 GATase1_PfpI_1 Type 1 52.6 26 0.00057 31.2 5.0 41 165-213 75-123 (180)
222 PRK05569 flavodoxin; Provision 52.4 41 0.0009 28.5 6.0 55 110-174 2-56 (141)
223 PRK15395 methyl-galactoside AB 52.3 1.2E+02 0.0025 29.9 10.0 89 107-204 22-113 (330)
224 PF13407 Peripla_BP_4: Peripla 52.1 82 0.0018 29.1 8.5 84 115-206 3-89 (257)
225 cd00886 MogA_MoaB MogA_MoaB fa 52.0 65 0.0014 28.0 7.2 57 131-187 23-87 (152)
226 COG2984 ABC-type uncharacteriz 51.8 1.5E+02 0.0032 29.5 10.2 95 87-189 140-234 (322)
227 KOG3857 Alcohol dehydrogenase, 51.7 43 0.00093 33.6 6.4 68 109-184 70-144 (465)
228 cd06271 PBP1_AglR_RafR_like Li 51.6 1.1E+02 0.0023 28.3 9.3 65 131-203 23-88 (268)
229 TIGR02634 xylF D-xylose ABC tr 51.6 91 0.002 30.1 9.0 67 130-203 17-85 (302)
230 TIGR02955 TMAO_TorT TMAO reduc 50.9 99 0.0022 29.5 9.1 56 131-186 19-78 (295)
231 TIGR01737 FGAM_synth_I phospho 50.6 88 0.0019 29.2 8.4 50 110-176 1-50 (227)
232 PRK12412 pyridoxal kinase; Rev 50.0 48 0.001 31.7 6.6 76 155-230 157-234 (268)
233 cd06316 PBP1_ABC_sugar_binding 49.9 98 0.0021 29.4 8.9 66 131-203 19-87 (294)
234 TIGR02478 6PF1K_euk 6-phosphof 49.6 38 0.00082 37.7 6.5 100 109-212 419-523 (745)
235 COG4635 HemG Flavodoxin [Energ 49.5 35 0.00075 30.4 4.9 91 110-214 1-93 (175)
236 PF05893 LuxC: Acyl-CoA reduct 49.4 26 0.00057 35.9 4.9 55 152-207 155-210 (399)
237 cd06329 PBP1_SBP_like_3 Peripl 49.3 1.9E+02 0.0041 28.3 11.0 78 108-189 142-224 (342)
238 cd00861 ProRS_anticodon_short 49.1 49 0.0011 25.6 5.6 46 129-176 19-64 (94)
239 PRK09065 glutamine amidotransf 48.8 58 0.0013 30.7 6.9 47 128-180 22-68 (237)
240 PRK10703 DNA-binding transcrip 48.8 1.6E+02 0.0034 28.7 10.3 86 110-204 60-146 (341)
241 PF06506 PrpR_N: Propionate ca 48.7 1.8E+02 0.0039 25.8 9.8 66 108-185 76-141 (176)
242 cd01251 PH_centaurin_alpha Cen 48.6 22 0.00048 28.9 3.5 26 79-104 76-101 (103)
243 TIGR03590 PseG pseudaminic aci 48.6 1.4E+02 0.0029 28.8 9.6 28 166-205 241-268 (279)
244 cd06347 PBP1_ABC_ligand_bindin 48.1 2.1E+02 0.0045 27.5 11.0 94 88-188 118-213 (334)
245 cd06360 PBP1_alkylbenzenes_lik 47.9 1.6E+02 0.0035 28.4 10.2 77 109-189 134-212 (336)
246 cd06302 PBP1_LsrB_Quorum_Sensi 47.9 1.2E+02 0.0026 29.0 9.1 66 131-203 19-87 (298)
247 cd06309 PBP1_YtfQ_like Peripla 47.3 78 0.0017 29.6 7.6 66 131-203 19-86 (273)
248 cd01542 PBP1_TreR_like Ligand- 47.2 1.2E+02 0.0026 27.9 8.8 58 130-188 18-76 (259)
249 cd06279 PBP1_LacI_like_3 Ligan 47.1 1.4E+02 0.0031 28.0 9.5 62 131-203 24-85 (283)
250 cd06283 PBP1_RegR_EndR_KdgR_li 46.9 1.5E+02 0.0033 27.2 9.5 68 129-204 17-85 (267)
251 cd06366 PBP1_GABAb_receptor Li 46.4 2.1E+02 0.0046 27.9 10.9 89 96-189 123-215 (350)
252 cd06334 PBP1_ABC_ligand_bindin 45.7 3.1E+02 0.0068 27.1 13.2 78 108-189 139-218 (351)
253 smart00852 MoCF_biosynth Proba 45.5 43 0.00093 28.3 5.0 57 131-188 21-84 (135)
254 cd06297 PBP1_LacI_like_12 Liga 45.4 1.8E+02 0.004 27.1 9.9 65 131-203 19-84 (269)
255 PLN02285 methionyl-tRNA formyl 45.4 60 0.0013 32.4 6.6 65 109-174 36-101 (334)
256 cd01575 PBP1_GntR Ligand-bindi 45.3 1.5E+02 0.0032 27.3 9.2 65 131-203 19-84 (268)
257 cd06321 PBP1_ABC_sugar_binding 45.3 1E+02 0.0022 28.7 8.1 67 131-204 19-89 (271)
258 cd00466 DHQase_II Dehydroquina 45.0 1E+02 0.0022 26.7 7.1 44 129-173 29-72 (140)
259 PRK12616 pyridoxal kinase; Rev 44.9 68 0.0015 30.7 6.8 26 205-230 212-237 (270)
260 PRK09590 celB cellobiose phosp 44.7 89 0.0019 25.6 6.4 99 110-233 2-101 (104)
261 cd00032 CASc Caspase, interleu 44.6 89 0.0019 29.5 7.5 70 108-178 7-86 (243)
262 cd05802 GlmM GlmM is a bacteri 44.5 86 0.0019 32.3 7.9 51 91-148 150-200 (434)
263 cd06386 PBP1_NPR_C_like Ligand 44.3 2.1E+02 0.0046 28.7 10.7 79 108-188 136-216 (387)
264 cd03089 PMM_PGM The phosphoman 44.1 1.1E+02 0.0023 31.7 8.6 78 92-177 146-236 (443)
265 PRK09701 D-allose transporter 44.0 1.6E+02 0.0035 28.4 9.5 87 108-203 23-113 (311)
266 cd03012 TlpA_like_DipZ_like Tl 43.9 1.7E+02 0.0037 24.1 8.4 91 82-179 28-118 (126)
267 cd01574 PBP1_LacI Ligand-bindi 43.9 1.8E+02 0.0038 26.8 9.5 49 131-179 19-69 (264)
268 TIGR02069 cyanophycinase cyano 43.9 84 0.0018 30.0 7.1 46 130-177 45-93 (250)
269 cd01235 PH_SETbf Set binding f 43.8 25 0.00053 27.9 3.0 24 80-103 78-101 (101)
270 cd06338 PBP1_ABC_ligand_bindin 43.8 3.1E+02 0.0067 26.5 12.7 77 109-189 141-219 (345)
271 cd02042 ParA ParA and ParB of 43.8 1.4E+02 0.0031 23.4 7.6 58 113-186 2-59 (104)
272 cd06342 PBP1_ABC_LIVBP_like Ty 43.4 2.1E+02 0.0047 27.4 10.3 78 108-189 134-213 (334)
273 PRK14324 glmM phosphoglucosami 43.4 99 0.0022 32.1 8.2 51 91-147 155-205 (446)
274 PRK09267 flavodoxin FldA; Vali 43.2 74 0.0016 28.0 6.3 85 110-206 2-89 (169)
275 PRK13566 anthranilate synthase 43.0 1.2E+02 0.0026 33.8 9.0 59 108-180 525-583 (720)
276 COG0041 PurE Phosphoribosylcar 42.5 70 0.0015 28.2 5.7 58 111-173 4-64 (162)
277 PRK09426 methylmalonyl-CoA mut 42.4 1.5E+02 0.0033 32.9 9.7 56 131-188 600-655 (714)
278 PRK14188 bifunctional 5,10-met 42.3 2.3E+02 0.005 27.8 10.0 98 90-191 9-118 (296)
279 cd06336 PBP1_ABC_ligand_bindin 42.0 2.3E+02 0.005 27.8 10.3 78 108-189 137-217 (347)
280 PRK14192 bifunctional 5,10-met 42.0 2.7E+02 0.0058 27.1 10.4 80 90-172 10-97 (283)
281 cd03146 GAT1_Peptidase_E Type 41.9 90 0.0019 28.8 6.9 80 98-188 19-100 (212)
282 PRK15118 universal stress glob 41.8 90 0.002 26.2 6.5 67 132-205 69-139 (144)
283 PF03129 HGTP_anticodon: Antic 41.6 91 0.002 24.2 6.0 60 114-176 3-62 (94)
284 PRK14317 glmM phosphoglucosami 41.5 1.2E+02 0.0025 31.7 8.4 52 91-148 168-219 (465)
285 cd01742 GATase1_GMP_Synthase T 41.5 38 0.00082 30.1 4.2 44 131-180 12-55 (181)
286 TIGR01815 TrpE-clade3 anthrani 41.5 2.7E+02 0.0059 31.0 11.5 59 109-181 516-574 (717)
287 PRK09273 hypothetical protein; 41.4 70 0.0015 29.8 5.8 70 115-216 5-82 (211)
288 cd06348 PBP1_ABC_ligand_bindin 41.3 1.7E+02 0.0038 28.4 9.3 79 108-189 135-215 (344)
289 COG1049 AcnB Aconitase B [Ener 41.2 8.7 0.00019 40.9 -0.1 48 169-216 460-513 (852)
290 cd06343 PBP1_ABC_ligand_bindin 41.2 3E+02 0.0066 26.9 11.1 77 109-189 144-222 (362)
291 cd06311 PBP1_ABC_sugar_binding 41.1 1.6E+02 0.0035 27.4 8.8 69 131-206 19-94 (274)
292 TIGR00177 molyb_syn molybdenum 41.0 73 0.0016 27.4 5.8 55 131-186 30-91 (144)
293 TIGR01481 ccpA catabolite cont 40.9 2.8E+02 0.0061 26.6 10.7 68 108-177 58-126 (329)
294 TIGR02667 moaB_proteo molybden 40.9 1.4E+02 0.0031 26.4 7.7 59 131-189 25-91 (163)
295 PRK14173 bifunctional 5,10-met 40.8 2.3E+02 0.0049 27.8 9.6 98 90-191 10-115 (287)
296 PRK05395 3-dehydroquinate dehy 40.6 1.1E+02 0.0023 26.8 6.6 42 130-172 32-73 (146)
297 cd06352 PBP1_NPR_GC_like Ligan 40.6 2.2E+02 0.0048 28.3 10.1 89 96-189 125-217 (389)
298 TIGR01455 glmM phosphoglucosam 40.5 1.3E+02 0.0028 31.1 8.5 51 91-147 152-202 (443)
299 cd06284 PBP1_LacI_like_6 Ligan 40.4 1.2E+02 0.0025 28.0 7.6 64 113-178 3-67 (267)
300 cd02990 UAS_FAF1 UAS family, F 40.3 2.2E+02 0.0049 24.5 8.5 16 173-188 116-131 (136)
301 PRK08857 para-aminobenzoate sy 40.2 1.2E+02 0.0025 27.5 7.2 48 129-181 11-58 (193)
302 PRK15404 leucine ABC transport 40.1 3.7E+02 0.008 26.8 11.6 78 108-189 160-239 (369)
303 cd06308 PBP1_sensor_kinase_lik 40.1 1.8E+02 0.0039 27.0 8.9 66 131-203 19-87 (270)
304 PRK00232 pdxA 4-hydroxythreoni 39.9 1.1E+02 0.0024 30.6 7.4 63 105-173 199-266 (332)
305 TIGR01120 rpiB ribose 5-phosph 39.7 1.2E+02 0.0026 26.4 6.8 57 129-216 13-75 (143)
306 COG1979 Uncharacterized oxidor 39.7 1.7E+02 0.0038 29.2 8.5 99 107-213 27-138 (384)
307 cd06354 PBP1_BmpA_PnrA_like Pe 39.5 1E+02 0.0022 29.0 7.1 45 131-175 22-66 (265)
308 PRK09542 manB phosphomannomuta 39.5 1.5E+02 0.0032 30.8 8.7 80 91-177 145-237 (445)
309 cd06277 PBP1_LacI_like_1 Ligan 39.1 2.2E+02 0.0047 26.4 9.3 57 131-189 22-79 (268)
310 cd06274 PBP1_FruR Ligand bindi 39.0 2.7E+02 0.0057 25.7 9.8 65 131-203 19-84 (264)
311 cd06326 PBP1_STKc_like Type I 39.0 3.6E+02 0.0078 25.9 13.4 77 109-189 136-214 (336)
312 cd06325 PBP1_ABC_uncharacteriz 38.9 3.2E+02 0.007 25.3 10.5 78 107-189 129-206 (281)
313 PRK14189 bifunctional 5,10-met 38.8 3.5E+02 0.0075 26.5 10.5 98 90-191 10-118 (285)
314 TIGR01382 PfpI intracellular p 38.8 71 0.0015 27.8 5.5 15 165-179 59-73 (166)
315 PRK14987 gluconate operon tran 38.7 2.8E+02 0.006 26.8 10.2 86 108-203 62-148 (331)
316 cd05805 MPG1_transferase GTP-m 38.6 1.3E+02 0.0029 31.0 8.3 51 91-147 147-198 (441)
317 cd03087 PGM_like1 This archaea 38.6 1.4E+02 0.003 30.8 8.4 80 91-177 145-236 (439)
318 PRK05562 precorrin-2 dehydroge 38.4 2.4E+02 0.0051 26.5 9.1 91 121-215 32-152 (223)
319 cd01230 PH_EFA6 EFA6 Pleckstri 38.3 44 0.00096 28.0 3.8 28 80-107 88-115 (117)
320 PRK11574 oxidative-stress-resi 38.2 1.2E+02 0.0025 27.4 6.9 65 109-178 2-78 (196)
321 TIGR02026 BchE magnesium-proto 38.0 79 0.0017 33.4 6.5 16 132-147 27-43 (497)
322 PRK13015 3-dehydroquinate dehy 37.9 1.2E+02 0.0025 26.6 6.3 42 130-172 32-73 (146)
323 PRK01175 phosphoribosylformylg 37.8 65 0.0014 31.0 5.3 54 110-175 4-57 (261)
324 PRK12615 galactose-6-phosphate 37.7 1.2E+02 0.0027 27.2 6.7 67 114-216 4-76 (171)
325 cd06221 sulfite_reductase_like 37.6 1.7E+02 0.0038 27.5 8.3 62 128-189 143-212 (253)
326 PF02863 Arg_repressor_C: Argi 37.5 17 0.00036 27.5 1.0 34 146-179 16-50 (70)
327 cd02037 MRP-like MRP (Multiple 37.4 1E+02 0.0022 26.9 6.3 39 113-153 2-40 (169)
328 PRK14315 glmM phosphoglucosami 37.4 1.4E+02 0.0031 30.9 8.2 50 92-147 157-206 (448)
329 cd06272 PBP1_hexuronate_repres 37.3 2.7E+02 0.0058 25.6 9.5 69 113-187 3-71 (261)
330 cd03128 GAT_1 Type 1 glutamine 37.2 86 0.0019 22.4 5.1 68 132-207 16-89 (92)
331 PLN03028 pyrophosphate--fructo 37.1 54 0.0012 35.5 5.1 100 109-212 111-217 (610)
332 PRK10116 universal stress prot 37.0 1.5E+02 0.0032 24.7 7.1 66 134-205 70-139 (142)
333 PRK00536 speE spermidine synth 37.0 20 0.00044 34.5 1.7 19 166-184 73-92 (262)
334 PRK03743 pdxA 4-hydroxythreoni 36.9 1.4E+02 0.003 29.9 7.6 61 107-173 201-266 (332)
335 cd03522 MoeA_like MoeA_like. T 36.8 1.6E+02 0.0035 29.1 8.1 69 107-177 157-230 (312)
336 TIGR01119 lacB galactose-6-pho 36.7 1.4E+02 0.003 26.9 6.9 57 129-216 14-76 (171)
337 PF09419 PGP_phosphatase: Mito 36.7 2.5E+02 0.0054 25.1 8.5 89 90-186 62-154 (168)
338 PF00117 GATase: Glutamine ami 36.7 55 0.0012 29.3 4.5 48 130-181 10-57 (192)
339 cd06337 PBP1_ABC_ligand_bindin 36.3 3.9E+02 0.0084 26.3 11.0 79 109-189 145-226 (357)
340 cd01653 GATase1 Type 1 glutami 36.3 1.4E+02 0.0029 22.5 6.3 69 132-208 16-90 (115)
341 cd01233 Unc104 Unc-104 pleckst 36.0 38 0.00083 27.2 3.0 25 79-103 74-98 (100)
342 cd06294 PBP1_ycjW_transcriptio 36.0 2.7E+02 0.0059 25.5 9.4 65 131-203 24-89 (270)
343 PTZ00287 6-phosphofructokinase 35.9 60 0.0013 38.5 5.4 76 131-213 889-973 (1419)
344 PF00885 DMRL_synthase: 6,7-di 35.8 2.2E+02 0.0047 24.8 7.8 79 109-189 3-94 (144)
345 cd00765 Pyrophosphate_PFK Phos 35.6 60 0.0013 34.8 5.1 101 108-214 103-212 (550)
346 cd06350 PBP1_GPCR_family_C_lik 35.4 4.2E+02 0.009 25.6 11.0 77 109-189 160-240 (348)
347 cd06346 PBP1_ABC_ligand_bindin 35.4 3.9E+02 0.0085 25.6 10.7 77 109-189 137-215 (312)
348 PRK03371 pdxA 4-hydroxythreoni 35.3 1.5E+02 0.0032 29.6 7.5 61 107-173 200-265 (326)
349 cd01265 PH_PARIS-1 PARIS-1 ple 35.3 43 0.00094 26.6 3.2 23 80-102 71-93 (95)
350 COG0218 Predicted GTPase [Gene 35.3 3.6E+02 0.0079 24.9 9.9 61 87-151 85-145 (200)
351 cd01540 PBP1_arabinose_binding 35.2 3.8E+02 0.0082 25.0 10.7 106 84-190 103-217 (289)
352 PRK10423 transcriptional repre 35.2 2E+02 0.0044 27.6 8.6 69 108-178 55-124 (327)
353 cd00758 MoCF_BD MoCF_BD: molyb 35.1 85 0.0018 26.6 5.2 56 131-187 22-84 (133)
354 TIGR00730 conserved hypothetic 35.1 35 0.00077 30.8 2.9 48 152-206 18-66 (178)
355 PRK11175 universal stress prot 34.7 1.6E+02 0.0035 28.2 7.8 69 135-209 76-150 (305)
356 cd06353 PBP1_BmpA_Med_like Per 34.6 1.4E+02 0.0031 28.2 7.2 65 132-203 22-87 (258)
357 PRK14318 glmM phosphoglucosami 34.6 1.7E+02 0.0036 30.4 8.2 49 91-147 157-205 (448)
358 PRK11253 ldcA L,D-carboxypepti 34.5 99 0.0021 30.5 6.2 65 113-180 4-81 (305)
359 TIGR01088 aroQ 3-dehydroquinat 34.5 1.6E+02 0.0034 25.7 6.5 44 129-173 29-72 (141)
360 cd06327 PBP1_SBP_like_1 Peripl 34.5 2.7E+02 0.0059 26.9 9.5 77 109-189 135-213 (334)
361 PF00462 Glutaredoxin: Glutare 34.4 1.6E+02 0.0035 20.6 5.9 44 131-175 13-57 (60)
362 COG1691 NCAIR mutase (PurE)-re 34.3 2.9E+02 0.0062 26.2 8.6 71 130-209 133-207 (254)
363 cd01541 PBP1_AraR Ligand-bindi 34.3 3.3E+02 0.0071 25.2 9.7 66 131-203 19-89 (273)
364 PRK14314 glmM phosphoglucosami 34.2 1.7E+02 0.0036 30.4 8.2 49 92-146 158-206 (450)
365 PF13377 Peripla_BP_3: Peripla 34.1 1.3E+02 0.0029 25.3 6.4 96 109-210 9-108 (160)
366 PRK13525 glutamine amidotransf 34.1 2E+02 0.0044 25.9 7.8 52 110-181 2-53 (189)
367 PF01075 Glyco_transf_9: Glyco 34.1 1.2E+02 0.0027 28.0 6.6 77 110-189 104-184 (247)
368 COG0683 LivK ABC-type branched 34.0 4.1E+02 0.009 26.4 10.8 101 81-189 124-226 (366)
369 TIGR00566 trpG_papA glutamine 34.0 1.5E+02 0.0032 26.8 6.8 48 129-181 11-58 (188)
370 TIGR00853 pts-lac PTS system, 33.8 1.5E+02 0.0032 23.7 6.1 55 108-172 2-56 (95)
371 PRK09739 hypothetical protein; 33.5 1.9E+02 0.0041 26.2 7.6 38 109-148 3-41 (199)
372 cd01220 PH_CDEP Chondrocyte-de 33.5 56 0.0012 26.4 3.5 26 79-104 73-98 (99)
373 COG1432 Uncharacterized conser 33.4 96 0.0021 28.0 5.5 35 155-189 99-133 (181)
374 PRK08622 galactose-6-phosphate 33.3 1.1E+02 0.0025 27.4 5.7 67 114-216 4-76 (171)
375 COG4242 CphB Cyanophycinase an 33.2 1.1E+02 0.0024 29.3 5.8 63 111-177 52-117 (293)
376 TIGR02477 PFKA_PPi diphosphate 33.2 63 0.0014 34.6 4.8 100 108-213 98-206 (539)
377 cd06293 PBP1_LacI_like_11 Liga 33.1 3.9E+02 0.0085 24.6 10.0 62 113-176 3-65 (269)
378 cd06292 PBP1_LacI_like_10 Liga 33.0 3.4E+02 0.0073 25.1 9.5 68 129-203 17-89 (273)
379 cd05799 PGM2 This CD includes 33.0 1.7E+02 0.0037 30.6 8.1 48 90-143 163-212 (487)
380 cd03145 GAT1_cyanophycinase Ty 33.0 1.4E+02 0.0031 27.6 6.8 45 131-177 47-94 (217)
381 cd01391 Periplasmic_Binding_Pr 32.9 3.5E+02 0.0077 24.0 11.3 99 82-189 102-204 (269)
382 cd03148 GATase1_EcHsp31_like T 32.6 67 0.0015 30.3 4.5 36 165-207 95-139 (232)
383 PRK10401 DNA-binding transcrip 32.4 4.4E+02 0.0095 25.6 10.6 67 108-176 58-125 (346)
384 PF00994 MoCF_biosynth: Probab 32.4 1E+02 0.0022 26.3 5.3 57 131-188 20-83 (144)
385 PRK07085 diphosphate--fructose 32.2 70 0.0015 34.4 4.9 103 107-213 100-209 (555)
386 PRK14180 bifunctional 5,10-met 32.2 4.1E+02 0.0089 25.9 9.8 80 108-191 31-117 (282)
387 cd05803 PGM_like4 This PGM-lik 32.1 1.6E+02 0.0035 30.4 7.7 80 92-177 151-244 (445)
388 cd01740 GATase1_FGAR_AT Type 1 32.1 1.1E+02 0.0023 28.9 5.8 53 113-177 2-54 (238)
389 cd00860 ThrRS_anticodon ThrRS 32.0 1.6E+02 0.0035 22.3 6.0 45 131-177 18-62 (91)
390 PRK07053 glutamine amidotransf 31.8 86 0.0019 29.5 5.1 60 108-179 1-60 (234)
391 COG0014 ProA Gamma-glutamyl ph 31.7 95 0.0021 31.7 5.5 95 131-244 160-257 (417)
392 PRK10936 TMAO reductase system 31.6 4.6E+02 0.01 25.7 10.6 86 108-203 45-134 (343)
393 cd06290 PBP1_LacI_like_9 Ligan 31.5 2.1E+02 0.0045 26.4 7.8 47 131-177 19-66 (265)
394 PF12138 Spherulin4: Spherulat 31.4 1E+02 0.0022 29.6 5.5 43 110-152 31-79 (253)
395 PRK13146 hisH imidazole glycer 31.4 2E+02 0.0043 26.5 7.3 55 110-182 2-56 (209)
396 TIGR00689 rpiB_lacA_lacB sugar 31.4 1.3E+02 0.0029 26.2 5.7 57 129-216 12-74 (144)
397 COG1611 Predicted Rossmann fol 31.3 60 0.0013 30.0 3.8 46 154-206 35-80 (205)
398 cd06358 PBP1_NHase Type I peri 31.3 4.9E+02 0.011 25.1 11.3 78 108-189 131-210 (333)
399 cd01252 PH_cytohesin Cytohesin 31.3 61 0.0013 27.1 3.6 27 79-105 89-115 (125)
400 cd01988 Na_H_Antiporter_C The 31.2 2.8E+02 0.006 22.3 11.3 67 131-203 59-131 (132)
401 cd01260 PH_CNK Connector enhan 31.1 47 0.001 26.1 2.8 22 80-101 74-95 (96)
402 TIGR00322 diphth2_R diphthamid 31.0 3.1E+02 0.0067 27.4 9.1 66 103-174 226-291 (332)
403 PF03698 UPF0180: Uncharacteri 30.9 90 0.0019 24.4 4.1 36 131-177 11-46 (80)
404 PF13344 Hydrolase_6: Haloacid 30.9 2.6E+02 0.0057 22.3 7.2 76 92-183 19-96 (101)
405 TIGR00557 pdxA 4-hydroxythreon 30.9 1.8E+02 0.0039 28.9 7.3 61 107-173 194-259 (320)
406 PF00169 PH: PH domain; Inter 30.8 52 0.0011 25.2 3.0 24 80-103 80-103 (104)
407 PRK10887 glmM phosphoglucosami 30.7 1.9E+02 0.0042 29.9 7.9 50 92-147 152-201 (443)
408 PF02608 Bmp: Basic membrane p 30.7 1.5E+02 0.0033 28.9 6.9 66 131-203 23-91 (306)
409 PRK02746 pdxA 4-hydroxythreoni 30.6 1.9E+02 0.0041 29.1 7.4 64 106-173 203-279 (345)
410 PRK10792 bifunctional 5,10-met 30.3 5.3E+02 0.011 25.2 10.3 99 90-191 10-119 (285)
411 TIGR01118 lacA galactose-6-pho 30.3 1.8E+02 0.0039 25.3 6.3 67 114-216 4-74 (141)
412 cd00738 HGTP_anticodon HGTP an 30.1 1.8E+02 0.004 22.1 6.1 43 131-175 21-63 (94)
413 PRK13527 glutamine amidotransf 30.0 1.5E+02 0.0032 26.9 6.3 43 129-180 15-57 (200)
414 COG0521 MoaB Molybdopterin bio 30.0 1.3E+02 0.0028 27.0 5.5 59 131-189 30-95 (169)
415 PRK14176 bifunctional 5,10-met 29.9 4.7E+02 0.01 25.6 9.9 98 90-191 15-124 (287)
416 PRK14184 bifunctional 5,10-met 29.9 5.4E+02 0.012 25.2 10.3 98 91-191 9-117 (286)
417 cd06379 PBP1_iGluR_NMDA_NR1 N- 29.8 5.6E+02 0.012 25.3 11.1 78 108-189 153-236 (377)
418 PRK08007 para-aminobenzoate sy 29.7 2E+02 0.0043 25.9 6.9 49 129-182 11-59 (187)
419 PLN02897 tetrahydrofolate dehy 29.7 4.8E+02 0.01 26.3 10.0 100 89-191 62-172 (345)
420 TIGR00097 HMP-P_kinase phospho 29.7 1.7E+02 0.0038 27.5 6.9 75 156-230 153-228 (254)
421 PRK14179 bifunctional 5,10-met 29.6 5.4E+02 0.012 25.1 10.5 97 90-190 9-117 (284)
422 cd06330 PBP1_Arsenic_SBP_like 29.6 3.2E+02 0.0069 26.5 9.0 78 108-189 137-218 (346)
423 TIGR00888 guaA_Nterm GMP synth 29.6 1.7E+02 0.0036 26.2 6.4 44 131-180 12-55 (188)
424 cd06311 PBP1_ABC_sugar_binding 29.5 3.1E+02 0.0068 25.4 8.7 99 84-189 105-207 (274)
425 COG4974 XerD Site-specific rec 29.5 1.7E+02 0.0037 28.7 6.6 66 111-191 209-274 (300)
426 PRK14168 bifunctional 5,10-met 29.5 4.9E+02 0.011 25.6 9.9 98 90-191 10-119 (297)
427 PF02016 Peptidase_S66: LD-car 29.4 51 0.0011 32.0 3.2 62 115-179 3-76 (284)
428 TIGR01470 cysG_Nterm siroheme 29.4 2.4E+02 0.0053 25.9 7.6 69 110-187 10-90 (205)
429 cd06363 PBP1_Taste_receptor Li 29.3 5.2E+02 0.011 26.1 10.8 78 108-189 175-257 (410)
430 PF01965 DJ-1_PfpI: DJ-1/PfpI 29.2 64 0.0014 27.7 3.5 50 161-214 32-87 (147)
431 PRK08621 galactose-6-phosphate 29.2 1.5E+02 0.0033 25.8 5.7 67 114-216 4-74 (142)
432 cd01169 HMPP_kinase 4-amino-5- 29.0 1.4E+02 0.0031 27.5 6.1 29 202-230 201-229 (242)
433 PF14593 PH_3: PH domain; PDB: 29.0 3.2E+02 0.007 22.3 7.6 68 18-104 28-100 (104)
434 TIGR01752 flav_long flavodoxin 28.9 1.6E+02 0.0035 25.9 6.1 83 112-206 2-87 (167)
435 PRK05948 precorrin-2 methyltra 28.8 3.8E+02 0.0082 25.3 8.9 98 111-215 29-141 (238)
436 PRK05571 ribose-5-phosphate is 28.8 2.3E+02 0.0049 24.9 6.8 57 129-216 14-77 (148)
437 PRK13869 plasmid-partitioning 28.7 1.9E+02 0.0041 29.6 7.4 69 88-158 88-167 (405)
438 PRK14178 bifunctional 5,10-met 28.7 5E+02 0.011 25.3 9.8 98 91-191 8-112 (279)
439 cd06355 PBP1_FmdD_like Peripla 28.7 5.3E+02 0.011 25.2 10.5 78 108-189 132-211 (348)
440 PRK13143 hisH imidazole glycer 28.6 3E+02 0.0066 24.9 8.1 47 110-175 1-47 (200)
441 PLN02616 tetrahydrofolate dehy 28.6 5.6E+02 0.012 26.0 10.3 100 89-192 79-190 (364)
442 smart00233 PH Pleckstrin homol 28.5 65 0.0014 24.1 3.1 24 80-103 78-101 (102)
443 cd03134 GATase1_PfpI_like A ty 28.5 97 0.0021 26.8 4.6 14 165-178 61-74 (165)
444 cd03028 GRX_PICOT_like Glutare 28.4 2.8E+02 0.0061 21.5 7.4 50 110-161 8-57 (90)
445 cd01250 PH_centaurin Centaurin 28.3 56 0.0012 25.1 2.7 22 80-101 72-93 (94)
446 PRK09492 treR trehalose repres 28.3 2.2E+02 0.0048 27.2 7.5 78 110-189 176-254 (315)
447 cd05565 PTS_IIB_lactose PTS_II 28.1 1.8E+02 0.0039 23.6 5.7 79 111-205 2-80 (99)
448 COG2240 PdxK Pyridoxal/pyridox 28.0 1.6E+02 0.0035 28.7 6.2 120 91-217 90-225 (281)
449 PRK14320 glmM phosphoglucosami 28.0 2.4E+02 0.0052 29.1 8.1 49 92-147 154-202 (443)
450 TIGR01481 ccpA catabolite cont 27.8 3.1E+02 0.0067 26.4 8.5 79 109-189 176-258 (329)
451 PRK03619 phosphoribosylformylg 27.8 1.8E+02 0.0039 27.0 6.4 51 110-177 1-52 (219)
452 PRK14316 glmM phosphoglucosami 27.8 2.7E+02 0.0058 28.8 8.4 49 92-148 156-204 (448)
453 PRK00005 fmt methionyl-tRNA fo 27.7 2E+02 0.0043 28.3 7.0 72 109-183 24-95 (309)
454 PRK14194 bifunctional 5,10-met 27.7 6E+02 0.013 25.0 10.5 98 90-191 11-119 (301)
455 PRK15408 autoinducer 2-binding 27.7 4.9E+02 0.011 25.7 10.0 59 131-189 43-104 (336)
456 COG3172 NadR Predicted ATPase/ 27.7 2.2E+02 0.0048 25.6 6.4 83 81-163 80-182 (187)
457 cd00858 GlyRS_anticodon GlyRS 27.7 2E+02 0.0043 23.7 6.2 44 131-177 45-88 (121)
458 cd03825 GT1_wcfI_like This fam 27.5 1.3E+02 0.0027 29.1 5.7 59 110-174 1-59 (365)
459 cd00885 cinA Competence-damage 27.5 1.4E+02 0.003 26.7 5.4 46 131-177 22-69 (170)
460 PRK08250 glutamine amidotransf 27.5 1E+02 0.0023 28.9 4.8 44 132-180 16-59 (235)
461 PRK05312 pdxA 4-hydroxythreoni 27.3 2.5E+02 0.0054 28.2 7.6 61 107-173 206-271 (336)
462 PRK10569 NAD(P)H-dependent FMN 27.3 3E+02 0.0064 25.0 7.6 35 111-147 2-37 (191)
463 PRK14190 bifunctional 5,10-met 27.2 5.1E+02 0.011 25.3 9.6 97 90-189 10-116 (284)
464 PRK09982 universal stress prot 27.2 2.8E+02 0.0061 23.3 7.2 47 154-206 91-140 (142)
465 COG0707 MurG UDP-N-acetylgluco 27.1 4.2E+02 0.0091 26.7 9.4 77 121-208 190-283 (357)
466 PTZ00215 ribose 5-phosphate is 27.0 2.4E+02 0.0053 24.8 6.7 68 113-216 5-80 (151)
467 cd01246 PH_oxysterol_bp Oxyste 27.0 64 0.0014 24.6 2.8 22 80-101 69-90 (91)
468 PRK01909 pdxA 4-hydroxythreoni 26.9 2.6E+02 0.0057 27.9 7.6 61 107-173 197-262 (329)
469 PRK07649 para-aminobenzoate/an 26.7 2.2E+02 0.0048 25.9 6.7 49 129-182 11-59 (195)
470 PLN02251 pyrophosphate-depende 26.5 1.3E+02 0.0028 32.4 5.8 102 109-215 128-237 (568)
471 cd06344 PBP1_ABC_ligand_bindin 26.5 5.9E+02 0.013 24.5 11.0 90 95-187 120-212 (332)
472 COG1647 Esterase/lipase [Gener 26.3 1.8E+02 0.0039 27.5 5.9 85 110-208 15-117 (243)
473 PRK11249 katE hydroperoxidase 26.3 1.5E+02 0.0032 33.1 6.3 63 110-177 598-669 (752)
474 PRK06427 bifunctional hydroxy- 26.3 1.3E+02 0.0027 28.6 5.3 27 204-230 210-236 (266)
475 PF02879 PGM_PMM_II: Phosphogl 26.1 1.5E+02 0.0033 23.5 5.0 78 94-177 2-94 (104)
476 COG0698 RpiB Ribose 5-phosphat 25.9 2.7E+02 0.0059 24.5 6.7 67 114-216 4-77 (151)
477 cd05800 PGM_like2 This PGM-lik 25.8 3.2E+02 0.007 28.3 8.6 49 92-146 153-202 (461)
478 PRK03604 moaC bifunctional mol 25.7 2.6E+02 0.0057 27.7 7.4 58 131-188 178-242 (312)
479 PRK13849 putative crown gall t 25.6 1.9E+02 0.004 27.2 6.2 48 111-160 2-49 (231)
480 PLN02516 methylenetetrahydrofo 25.6 6.4E+02 0.014 24.8 10.0 99 90-192 16-126 (299)
481 COG1393 ArsC Arsenate reductas 25.5 2.1E+02 0.0046 23.9 5.8 30 111-147 2-31 (117)
482 cd03026 AhpF_NTD_C TRX-GRX-lik 25.5 3.3E+02 0.0071 21.2 7.7 68 99-172 3-71 (89)
483 PF04101 Glyco_tran_28_C: Glyc 25.5 1E+02 0.0022 26.8 4.1 42 150-207 61-102 (167)
484 cd01748 GATase1_IGP_Synthase T 25.5 2.7E+02 0.0059 25.0 7.2 44 114-175 2-45 (198)
485 cd06280 PBP1_LacI_like_4 Ligan 25.4 3E+02 0.0066 25.3 7.7 48 130-177 18-66 (263)
486 PRK04280 arginine repressor; P 25.3 1.1E+02 0.0024 26.7 4.2 48 132-179 74-127 (148)
487 cd03088 ManB ManB is a bacteri 25.2 3.5E+02 0.0076 28.1 8.7 80 91-177 146-236 (459)
488 COG1819 Glycosyl transferases, 25.2 76 0.0017 32.6 3.7 32 164-206 298-329 (406)
489 PRK14181 bifunctional 5,10-met 25.0 6.3E+02 0.014 24.7 9.8 97 91-191 8-112 (287)
490 PRK00170 azoreductase; Reviewe 24.6 3.1E+02 0.0068 24.5 7.4 38 110-148 2-42 (201)
491 PRK03946 pdxA 4-hydroxythreoni 24.5 1.2E+02 0.0026 29.9 4.8 64 106-173 175-242 (307)
492 PF04577 DUF563: Protein of un 24.5 4E+02 0.0086 23.7 8.1 85 94-190 86-172 (206)
493 PRK12613 galactose-6-phosphate 24.4 2.6E+02 0.0055 24.3 6.2 67 114-216 4-73 (141)
494 PRK15414 phosphomannomutase Cp 24.4 3.5E+02 0.0077 28.1 8.6 51 92-146 152-202 (456)
495 cd06307 PBP1_uncharacterized_s 24.3 4.6E+02 0.01 24.2 8.8 65 131-203 19-89 (275)
496 TIGR01768 GGGP-family geranylg 24.2 1.4E+02 0.003 28.1 4.9 56 154-213 15-70 (223)
497 PRK06455 riboflavin synthase; 24.1 3.8E+02 0.0082 23.7 7.2 60 110-174 2-64 (155)
498 PRK14169 bifunctional 5,10-met 24.1 6.1E+02 0.013 24.8 9.5 98 91-191 9-116 (282)
499 cd05564 PTS_IIB_chitobiose_lic 23.9 1.8E+02 0.0038 23.2 4.9 73 121-205 7-79 (96)
500 TIGR02405 trehalos_R_Ecol treh 23.9 3.7E+02 0.0079 25.7 8.2 67 108-176 58-125 (311)
No 1
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=9.6e-83 Score=657.30 Aligned_cols=418 Identities=72% Similarity=1.237 Sum_probs=375.3
Q ss_pred CcccccceeceEEEeceeEEEEEcCCCeEEEecCCccceeeeeeeeEEEEcCceEEEEEeecCCCcccccCCCCceEEee
Q 014455 2 DQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKD 81 (424)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (424)
+..++++++++|+|||..+++||+++|+|+|++++++|+++++||||+.++|++++|++++++..+.+|.+++++|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (481)
T PLN02958 4 ELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARKD 83 (481)
T ss_pred cCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceeee
Confidence 45566799999999999999999999999999988999999999999999999999999999988999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH
Q 014455 82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV 161 (424)
Q Consensus 82 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~ 161 (424)
|+|.+.+.+.|+.|+++|++++++.+||||++||+||.||++++.++|.++++++|++++++++++.|++++||.+++++
T Consensus 84 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~ 163 (481)
T PLN02958 84 FVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRT 163 (481)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHH
Confidence 99999999999999999999999889999999999999999999988877899999999999999999999999999999
Q ss_pred hccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeee
Q 014455 162 LDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLD 241 (424)
Q Consensus 162 ~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lD 241 (424)
++..+||.|||+|||||||||+|||+.+++|+...++||||||+||||||||+|.+..|+|.++.+|+..|++|+.+++|
T Consensus 164 ~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~vD 243 (481)
T PLN02958 164 MDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSLD 243 (481)
T ss_pred hhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEEe
Confidence 88789999999999999999999999988777677899999999999999999976668999999999999999999999
Q ss_pred eEEEEeCCeeEEEEEeeeeeeeecccccccccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCc
Q 014455 242 VATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNI 321 (424)
Q Consensus 242 l~~v~~g~~~~f~~~~~~~G~~Adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (424)
++++++++.++|++++++|||+|+|+..++++||||++||.+++++++++++.|+++|+|+|+++.+.++.|.++.....
T Consensus 244 lg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~~~a~~~~~~~~~~~~~~~~~ 323 (481)
T PLN02958 244 VATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISFVPAPGFEAYGEPTSYNGEST 323 (481)
T ss_pred EEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEEEecccccccccccccccccc
Confidence 99998655567766789999999999999999999999999999999999999999999999988877776655432100
Q ss_pred CCCCCCCCCcccccccccCCCcccCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHH
Q 014455 322 CNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFS 401 (424)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~ 401 (424)
.++.+...+...+.++..+.+..+|+.+++.|++++++|++|+|+++.++|+|+++||+|||+++++++++++++
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~LDlviv~~~s~~~lL~ 398 (481)
T PLN02958 324 -----SKEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYLDLILIKDCPKLALLA 398 (481)
T ss_pred -----ccccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeEEEEEEcCCCHHHHHH
Confidence 000011111123444444445568999999999899999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcccCCCeEEEEeeC
Q 014455 402 LLSNLNKGGHVESPYVAYLKVSS 424 (424)
Q Consensus 402 ~l~~~~~G~h~~~p~V~~~k~ka 424 (424)
+|+++.+|+|+++|+|+|+++|+
T Consensus 399 ~l~~~~~G~h~~~~~V~~~k~k~ 421 (481)
T PLN02958 399 LMTKLSDGTHVKSPYVMYLKVKA 421 (481)
T ss_pred HHHHHhCCCccCCCceEEEEEEE
Confidence 99999999999999999999874
No 2
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=1.5e-59 Score=482.95 Aligned_cols=411 Identities=24% Similarity=0.389 Sum_probs=314.6
Q ss_pred cccceeceEEEec-eeEEEEEcCCCeEEEec-C-----Cccce-----------eeeeeeeEEEEcCceEEEEEeecCCC
Q 014455 5 VQDTLSDRVRVSG-RITAMTLTGDGRLRWTD-G-----HQRSL-----------TLEKQVLGFVVEGSKIRIRAVVDGRD 66 (424)
Q Consensus 5 ~~~~~~~~~~~~~-~~~~~~l~~~~~l~~~~-~-----~~~~~-----------~~~~~vl~~~~~~~~~~~~~~~~~~~ 66 (424)
+.++|.+.+.+++ ..+.|||++|+ |.|.+ . ++.|+ .-.+||+||+..+..+.+.|.....+
T Consensus 17 ~~~~~~~~~~~~~~~~v~lt~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~ 95 (601)
T PLN02204 17 DRSVLSSCLFLDHVGDVSLTLNSDG-LSWKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVEFINYGLIHSPKLSHAK 95 (601)
T ss_pred ccccccceeeecccccEEEEEcCCc-eEEecccccccCCceeeccccccCcccceeeeeeeEEeeccccceecccccccc
Confidence 3456777777666 56899998899 99997 1 12221 11279999998877777655543333
Q ss_pred ccc--------------------ccCCCCceEEeeEEeCCCCHHHHHHHHHHHHHhhh-hcCCCcEEEEEEcCCCCCcch
Q 014455 67 EIC--------------------CGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125 (424)
Q Consensus 67 ~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~r~~~~~vivNP~sG~~~a 125 (424)
.+. ....+..|+...|+|.+.+...++.|+++|++++. ...|||+++||+||.||++++
T Consensus 96 ~~~~~~~~~~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~ 175 (601)
T PLN02204 96 GCFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSG 175 (601)
T ss_pred hhhhccccccccceeeEEEEeeecccCCCcceeEEEeecCCCHHHHHHHHHHHHHHHhhccCCCceEEEEECCCCCCcch
Confidence 211 01123357889999999999999999999999987 568999999999999999999
Q ss_pred hhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc---cCCCceEEEEcCCchHHHHHHHhhcCcC-----------
Q 014455 126 SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLERED----------- 191 (424)
Q Consensus 126 ~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~---~~~~d~vV~vGGDGTl~evvngL~~~~~----------- 191 (424)
.+.|+ ++.++|+++++++++++|++++||.++++++. +.+||+||+||||||+|||+|||+.+..
T Consensus 176 ~~~~~-~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~ 254 (601)
T PLN02204 176 SRTWE-TVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDS 254 (601)
T ss_pred HHHHH-HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhccccccccccccc
Confidence 99996 89999999999999999999999999987654 6789999999999999999999984210
Q ss_pred --------------cc------------------------------------------cccCCcEEEecCCChhhhhhhh
Q 014455 192 --------------WN------------------------------------------DAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 192 --------------~~------------------------------------------~~~~~plgiiP~GTgN~~Ar~l 215 (424)
++ ...+++|||||+||||+||+++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~ 334 (601)
T PLN02204 255 VHSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCT 334 (601)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHc
Confidence 00 0135899999999999999998
Q ss_pred ccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCC----------eeEEEEEeeeeeeeecccccccccccccchhhHHHH
Q 014455 216 LDLVGEPCKASNAILAVIRGHKRLLDVATILQGK----------TRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYA 285 (424)
Q Consensus 216 ~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~----------~~~f~~~~~~~G~~Adv~~~sek~R~~G~~ry~~~~ 285 (424)
..|.++..++.+|+.|+.+++|+++|+.++ .+||++ ++|+||+|+|..++|++||||++||.+++
T Consensus 335 ----~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s-~ag~Gf~gdVi~esek~R~mG~~rY~~~g 409 (601)
T PLN02204 335 ----TGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAAS-FAGYGFYGDVISESEKYRWMGPKRYDYAG 409 (601)
T ss_pred ----cCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEE-EeecchHHHHHHHhhhhcccchHHHHHHH
Confidence 447899999999999999999999997421 256654 79999999999999999999999999999
Q ss_pred HHHHHhccccceEEEEecCCCCCCCC---CCCc------ccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEee
Q 014455 286 LQRILYLRQYNGRVSFVPAPGFENHG---EPST------YSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIING 356 (424)
Q Consensus 286 l~~l~~~r~y~~~i~~~~~~~~~~~~---~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g 356 (424)
++.+++++.|+++|+|.+........ .|.+ ....|..++.+|+.... .+ -.+..+.......+|.++.|
T Consensus 410 ~k~~~~~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~-~~-~~~~~p~~~~~~~~W~~~~G 487 (601)
T PLN02204 410 TKVFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVS-TN-SPSTTPNSCPEETRWLRSKG 487 (601)
T ss_pred HHHHHhCCCceEEEEECCeEeeecccccccccccccccccchhhhhheeeeccccc-cc-ccccccccccccccceeecC
Confidence 99999999999999998653221000 0000 00011112223321100 00 00111112234568999999
Q ss_pred ceEEEEeeecccCCCCC--ccCcCCccCCCcEEEEEEcCCChHHHHHHHHhcc-C-CCcccCCCeEEEEeeC
Q 014455 357 PFVAVWLHNVPWGSENT--MAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN-K-GGHVESPYVAYLKVSS 424 (424)
Q Consensus 357 ~~~~v~v~N~~~~g~~~--~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~-~-G~h~~~p~V~~~k~ka 424 (424)
.|.++.++++++.++.. .++|+|+++||.|||++|++++++.+|++|+++. + |+|+++|+|+|+|+++
T Consensus 488 ~f~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~ 559 (601)
T PLN02204 488 RFLSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPA 559 (601)
T ss_pred ceEEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeE
Confidence 99888877777665544 4899999999999999999999999999998887 3 6999999999999874
No 3
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-59 Score=470.76 Aligned_cols=319 Identities=43% Similarity=0.732 Sum_probs=267.9
Q ss_pred hcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 105 ~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
+.+|+++++||+||++|+|+|.++|.++++|+|.+++++++++.|++++||+++++.++.++||+|||+||||++|||+|
T Consensus 175 ~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEVlN 254 (579)
T KOG1116|consen 175 SLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEVLN 254 (579)
T ss_pred ccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeC-CeeEEEEEeeeeeee
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQG-KTRFHSVLMLAWGLV 263 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g-~~~~f~~~~~~~G~~ 263 (424)
||+.|+||+++.++|||+||+||||+||+++++..|. .-+..|+..|++|...++|+..+... +.++|++++++|||+
T Consensus 255 GLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~-~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~fSfLs~~wGlI 333 (579)
T KOG1116|consen 255 GLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP-DLPLLATLLIIRGRLTPMDVSVVEYAGKDRHFSFLSAAWGLI 333 (579)
T ss_pred ccccccchhhHhcCceeEeecCCccHHHHHhhcccCc-ccchHHHHHHHccCCCchheeehhhccCcceEEEEeeeeeeE
Confidence 9999999999999999999999999999999887663 13678889999999999999999864 345899999999999
Q ss_pred ecccccccccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCccc-----ccCcC-------CCC------
Q 014455 264 ADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYS-----EQNIC-------NPI------ 325 (424)
Q Consensus 264 Adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~-----~~~~~-------~~~------ 325 (424)
||+++++||+||||++||+++++++++.+|+|++++.|+|+.+....+.|..+. .+|.. +..
T Consensus 334 ADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~ 413 (579)
T KOG1116|consen 334 ADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGKSAEPLPAHELEAADSEGCLSTHADTEPSEYPRLSVP 413 (579)
T ss_pred EecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEecccccccCcccchhhcccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999987765554433111 11110 000
Q ss_pred ------CCC----CCcccc-cccccCCC-cccCCCCceEEEee-ceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEc
Q 014455 326 ------PSQ----QQPIKI-LQHGYQGP-DVDLKNLEWRIING-PFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIK 392 (424)
Q Consensus 326 ------~~~----~~~~~~-~~~~~~g~-~~~~~~~~w~~i~g-~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~ 392 (424)
... +.+... +....+-+ .....+.+|..+++ +|..+...-.+|+|.++.++|.|.++||.+||++++
T Consensus 414 ~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~sy~~~d~~~~P~A~~~dg~I~lv~~~ 493 (579)
T KOG1116|consen 414 KMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLSYLGADMKFAPAARPDDGLIHLVIVR 493 (579)
T ss_pred ccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhhhccCCcccccccccCCCeEEEEEEc
Confidence 000 000000 00000001 11223467999988 898888777889999999999999999999999999
Q ss_pred C-CChHHHHHHHHhccCCCcc--cCCCeEEEEeeC
Q 014455 393 D-CPKLALFSLLSNLNKGGHV--ESPYVAYLKVSS 424 (424)
Q Consensus 393 ~-~s~~~ll~~l~~~~~G~h~--~~p~V~~~k~ka 424 (424)
. .+|.+++++|+++.+|.|+ ..|+|.|++++|
T Consensus 494 ~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra 528 (579)
T KOG1116|consen 494 AGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRA 528 (579)
T ss_pred cCCcHHHHHHHHHhhcccccccccCCceeEEEeEE
Confidence 5 6999999999999999996 889999999875
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-51 Score=396.04 Aligned_cols=321 Identities=29% Similarity=0.473 Sum_probs=274.4
Q ss_pred CCceEEeeEEeCCCCHHHHHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh
Q 014455 74 AGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (424)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~ 152 (424)
..+|+...++|.+.+.++++.|.+.|+..|.. ..|||.++|||||++|+|++.++|+ .|.++|-.+.+.++|++||++
T Consensus 122 k~~W~laq~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e-~V~~~F~la~v~tkvivTErA 200 (516)
T KOG1115|consen 122 KELWNLAQFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWE-TVSKIFILAKVNTKVIVTERA 200 (516)
T ss_pred hhhcchhcceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhh-hhhhhEEeeecceeEEEEccc
Confidence 35788899999999999999999999998765 4899999999999999999999996 599999999999999999999
Q ss_pred hhHHHHHHHhc---cCCCceEEEEcCCchHHHHHHHhhcCcCccc------------ccCCcEEEecCCChhhhhhhhcc
Q 014455 153 LHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLEREDWND------------AIKVPLGVVPAGTGNGMIKSLLD 217 (424)
Q Consensus 153 ~~a~~l~~~~~---~~~~d~vV~vGGDGTl~evvngL~~~~~~~~------------~~~~plgiiP~GTgN~~Ar~l~~ 217 (424)
+||.+.+.++. .+.||+||+|||||.+||++||++.+.+... ...+.+||||+||+|.+..+..
T Consensus 201 nhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~- 279 (516)
T KOG1115|consen 201 NHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT- 279 (516)
T ss_pred cchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec-
Confidence 99999998886 5789999999999999999999988753221 1257799999999999999873
Q ss_pred ccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCC-eeEEEEEeeeeeeeecccccccccccccchhhHHHHHHHHHhccccc
Q 014455 218 LVGEPCKASNAILAVIRGHKRLLDVATILQGK-TRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYN 296 (424)
Q Consensus 218 ~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~-~~~f~~~~~~~G~~Adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~ 296 (424)
| ..|+...+.+|+-|+...+|+++|.+.+ --.|+++.+|+||++||..+||||||||+.||++++++.+++++.|+
T Consensus 280 --g-t~D~~TSAlHI~lG~~l~vDVctVht~~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~Ye 356 (516)
T KOG1115|consen 280 --G-TRDPVTSALHIILGRKLFVDVCTVHTIEKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYE 356 (516)
T ss_pred --c-CCccccceeeeEeccceeeeeeeeeecchheeeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccc
Confidence 3 3467777889999999999999998533 34688888899999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccCCCCceEEEeeceEEEEeeecccCCCCC--c
Q 014455 297 GRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENT--M 374 (424)
Q Consensus 297 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~--~ 374 (424)
|.|+|+|+..... ++++. -.|-+.....+.|+.+.++|..+.++++|+.+... .
T Consensus 357 geVsFlpa~sen~-----------------~qe~~-------~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrG 412 (516)
T KOG1115|consen 357 GEVSFLPAESENP-----------------CQEPC-------PSGASLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRG 412 (516)
T ss_pred eEEEecccccCCc-----------------hhccc-------cccCCcccCcchhhhhhhheeeeeEeeccccccCCCCC
Confidence 9999998854321 11110 01111223456799999999999999999998864 5
Q ss_pred cCcCCccCCCcEEEEEEcCCChHHHHHHHHhcc-CCCcccCCCeEEEEee
Q 014455 375 AAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN-KGGHVESPYVAYLKVS 423 (424)
Q Consensus 375 ~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~-~G~h~~~p~V~~~k~k 423 (424)
++|.+.++||.+||++++.+||+.+++++.+.. .+++++.++|+.+.++
T Consensus 413 LaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~ 462 (516)
T KOG1115|consen 413 LAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVD 462 (516)
T ss_pred cCCccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeee
Confidence 899999999999999999999999999997754 5889999999998874
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.3e-48 Score=384.47 Aligned_cols=255 Identities=22% Similarity=0.364 Sum_probs=227.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
++++++|+||.||++++.+.|. ++.+.|+++++++.++.|++++|+.++++++...++|.||++|||||+|||+|+|+.
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~-~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~ 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAE-RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHH-HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc
Confidence 5899999999999999888884 788899999999999999999999999999877889999999999999999999976
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCC-CHHHHHHHHHhCCeeeeeeEEEEeC--CeeEEEEEeeeeeeeec
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQG--KTRFHSVLMLAWGLVAD 265 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~-~~~~a~~~i~~g~~~~lDl~~v~~g--~~~~f~~~~~~~G~~Ad 265 (424)
. ++|||+||+||+|+|||+| |+|. ++++|+..|..|+.+++|+++++.. +.++|.+ ++++||+|+
T Consensus 87 ~-------~~~lgiiP~GT~NdfAr~l----g~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~n-~~~~G~~a~ 154 (306)
T PRK11914 87 T-------DIPLGIIPAGTGNDHAREF----GIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFGT-VAATGFDSL 154 (306)
T ss_pred C-------CCcEEEEeCCCcchhHHHc----CCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEEE-EEeeehHHH
Confidence 4 6899999999999999999 8886 7999999999999999999999752 2367876 699999999
Q ss_pred cccccccccc-ccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 014455 266 IDIESEKYRW-MGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (424)
Q Consensus 266 v~~~sek~R~-~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (424)
|...+++.|| +|+++|.+++++.+++.+.|+.++.+. +
T Consensus 155 v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~d--------------------------------------g--- 193 (306)
T PRK11914 155 VTDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVLD--------------------------------------G--- 193 (306)
T ss_pred HHHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEEe--------------------------------------C---
Confidence 9887777766 799999999999998888787766531 1
Q ss_pred cCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 345 ~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
++.+++++.++.++|++++|+++.++|+|+++||.|||++++..++++++++++.+++|+|.+.|.|++++++
T Consensus 194 ------~~~~~~~~~~~~v~N~~~~GG~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~ 266 (306)
T PRK11914 194 ------TEEIVTDLTLAAFGNTRSYGGGMLICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAK 266 (306)
T ss_pred ------CeEEEeeEEEEEEeCcccccCCceeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeE
Confidence 1234556778889999999999999999999999999999999999999999999999999999999999986
No 6
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=2.1e-46 Score=366.62 Aligned_cols=251 Identities=23% Similarity=0.368 Sum_probs=217.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
++++++|+||.||++++.+.| +++++.|+++++++.++.|+..+++ +.++++..+++|.||++|||||+|||+|+|++
T Consensus 1 ~~~~~~I~NP~aG~g~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~ 78 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIISEL-DKVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKK 78 (295)
T ss_pred CcEEEEEECCcccchhHHHHH-HHHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHh
Confidence 468999999999999987777 4789999999999988888776654 55666656789999999999999999999996
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccc
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~ 268 (424)
+. .++||||||+||+|||||+| |+|.++.+|+..|..|+.+++|+++++ .++|.+ ++++||+|++..
T Consensus 79 ~~-----~~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~v~---~~~f~n-~~~~G~~a~v~~ 145 (295)
T PRK13059 79 LN-----IDLPIGILPVGTANDFAKFL----GMPTDIGEACEQILKSKPKKVDLGKIN---DKYFIN-VASTGLFTDVSQ 145 (295)
T ss_pred cC-----CCCcEEEECCCCHhHHHHHh----CCCCCHHHHHHHHHhCCcEEeeEEEEC---CEEEEE-EEeeeechhhhh
Confidence 53 36899999999999999999 899999999999999999999999997 367866 799999999998
Q ss_pred ccc--ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccC
Q 014455 269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (424)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (424)
..+ +++++|.++|.+.+++.+++.+.|+.++.. ++
T Consensus 146 ~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~--------------------------------------d~----- 182 (295)
T PRK13059 146 KTDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTS--------------------------------------EE----- 182 (295)
T ss_pred hccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEE--------------------------------------CC-----
Confidence 753 556789999999999999888777666542 11
Q ss_pred CCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCC-eEEEEee
Q 014455 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPY-VAYLKVS 423 (424)
Q Consensus 347 ~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~-V~~~k~k 423 (424)
+.+++++.+++++|++|+|+ +.++|+|+++||+|||+++++.++++++++++.+.+|+|.+.|. |++++++
T Consensus 183 -----~~~~~~~~~~~v~N~~~~Gg-~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~ 254 (295)
T PRK13059 183 -----VNFDGDMYLMLVFNGQTAGN-FNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTD 254 (295)
T ss_pred -----EEEEeeEEEEEEEcCccccC-cccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEee
Confidence 23455677788999999985 69999999999999999999999999999999999999999999 9999986
No 7
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.2e-46 Score=369.97 Aligned_cols=253 Identities=27% Similarity=0.396 Sum_probs=223.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
++|+++|+||+||++++.+.|. ++.+.|++++++++++.|++++|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 1 ~~r~~~I~Np~aG~~~~~~~~~-~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~ 79 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKKNLP-DVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAE 79 (304)
T ss_pred CceEEEEECCcccchhHHHHHH-HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhh
Confidence 4789999999999998777784 788899999999999999999999999998877789999999999999999999987
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccc
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~ 268 (424)
++ .++|||+||+||+|+|||+| |+|.++.+|+..|..|..+++|+++++ .++|.+ ++|+|+++++..
T Consensus 80 ~~-----~~~~lgiiP~GT~NdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~vn---~~~fln-~~g~G~~a~v~~ 146 (304)
T PRK13337 80 KE-----NRPKLGIIPVGTTNDFARAL----HVPRDIEKAADVIIEGHTVPVDIGKAN---NRYFIN-IAGGGRLTELTY 146 (304)
T ss_pred CC-----CCCcEEEECCcCHhHHHHHc----CCCCCHHHHHHHHHcCCeEEEEEEEEC---CEEEEe-eehhhHHHHHHH
Confidence 63 25899999999999999999 899999999999999999999999997 377866 799999999976
Q ss_pred cc--cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccC
Q 014455 269 ES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (424)
Q Consensus 269 ~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (424)
.. +.++++|.++|.+.+++.+.+.+.|+.++.. +
T Consensus 147 ~~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~--------------------------------------d------ 182 (304)
T PRK13337 147 EVPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEY--------------------------------------D------ 182 (304)
T ss_pred hcCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEE--------------------------------------C------
Confidence 53 3456789999999999888877777665531 1
Q ss_pred CCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 347 ~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
++.++.++.+++++|++++|+++.++|+|+++||.||++++++.+++++++++..+..|+|.+.|.|++++++
T Consensus 183 ----~~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~ 255 (304)
T PRK13337 183 ----GKLFQGEIMLFLLGLTNSVGGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKAN 255 (304)
T ss_pred ----CeEEEeEEEEEEEEcCcccCCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEcc
Confidence 1223456777889999999999999999999999999999999999999999999999999999999999886
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.1e-46 Score=371.34 Aligned_cols=254 Identities=24% Similarity=0.366 Sum_probs=222.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
++|++||+||.||++++.+.| +++++.|++++++++++.|+ .++|+.++++++..+++|.||++|||||+|||+|+|+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~ 80 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA 80 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh
Confidence 579999999999999988778 58999999999999987776 5689999999887778999999999999999999998
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCCCC-CHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~-~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv 266 (424)
... ..+||||||+||+|+|||+| |+|. ++.+|+..|.+|+++++|++.+++ .++|.+ ++|+|++|++
T Consensus 81 ~~~-----~~~~LgiiP~GTgNdfAr~L----gi~~~~~~~a~~~l~~g~~~~vD~g~v~~--~~~F~n-~ag~G~da~v 148 (334)
T PRK13055 81 PLE-----KRPKMAIIPAGTTNDYARAL----KIPRDNPVEAAKVILKNQTIKMDIGRANE--DKYFIN-IAAGGSLTEL 148 (334)
T ss_pred hcC-----CCCcEEEECCCchhHHHHHc----CCCCcCHHHHHHHHHcCCcEEeeEEEECC--CcEEEE-EehhccchHH
Confidence 653 25899999999999999999 8998 899999999999999999999962 467866 6999999999
Q ss_pred cccc--cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 014455 267 DIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (424)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (424)
.... ..++++|+++|.+.+++.+++.+.|+.++.+ ++
T Consensus 149 ~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~--------------------------------------d~--- 187 (334)
T PRK13055 149 TYSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITY--------------------------------------DE--- 187 (334)
T ss_pred HHhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEE--------------------------------------CC---
Confidence 8653 3455789999999999999888887776642 11
Q ss_pred cCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccC-CCcccCCCeEEEEee
Q 014455 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNK-GGHVESPYVAYLKVS 423 (424)
Q Consensus 345 ~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~-G~h~~~p~V~~~k~k 423 (424)
...++++.+++++|++++|+++.++|+|+++||.||++++++.+++++++++..+.+ |+|.++|.|+|++++
T Consensus 188 -------~~~~~~~~~~~v~n~~~~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~ 260 (334)
T PRK13055 188 -------GVFEGKISMFFLALTNSVGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTS 260 (334)
T ss_pred -------EEEEEEEEEEEEEcCcccCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEcc
Confidence 123456677889999999999999999999999999999999999999999999999 999999999999986
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=5.1e-45 Score=355.69 Aligned_cols=244 Identities=24% Similarity=0.341 Sum_probs=214.3
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCc
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDW 192 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~ 192 (424)
++|+||.||+++. .+ +++++.|+++++++++..|++++|+.++++++ ..++|.||++|||||+|||+|+|+.+
T Consensus 1 ~~I~Np~sg~~~~--~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GGDGTv~~v~~~l~~~--- 73 (287)
T PRK13057 1 LLLVNRHARSGRA--AL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGGDGTLNAAAPALVET--- 73 (287)
T ss_pred CEEECCCCCCcch--hH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECchHHHHHHHHHHhcC---
Confidence 4799999998773 46 58999999999999999999999999999985 46799999999999999999999865
Q ss_pred ccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccccc--
Q 014455 193 NDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES-- 270 (424)
Q Consensus 193 ~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~~s-- 270 (424)
++|||+||+||+|+|||+| |+|.++.+++..|..|+.+++|+++++ .++|.+ ++|+||+|++....
T Consensus 74 ----~~~lgiiP~GT~Ndfar~L----g~~~~~~~a~~~i~~~~~~~vD~g~~~---~~~f~n-~~g~G~da~v~~~~~~ 141 (287)
T PRK13057 74 ----GLPLGILPLGTANDLARTL----GIPLDLEAAARVIATGQVRRIDLGWVN---GHYFFN-VASLGLSAELARRLTK 141 (287)
T ss_pred ----CCcEEEECCCCccHHHHHc----CCCCCHHHHHHHHHcCCeEEeeEEEEC---CEEEEE-EEecCccHHHHHHhhH
Confidence 6899999999999999999 889999999999999999999999996 367765 69999999998653
Q ss_pred cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccCCCCc
Q 014455 271 EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLE 350 (424)
Q Consensus 271 ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 350 (424)
++++.+|.++|.+.+++.+++.+.|+.++.. ++
T Consensus 142 ~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~--------------------------------------d~--------- 174 (287)
T PRK13057 142 ELKRRWGTLGYAIAALRVLRRSRPFTAEIEH--------------------------------------DG--------- 174 (287)
T ss_pred HhhccCChhHHHHHHHHHHhhCCCeEEEEEE--------------------------------------CC---------
Confidence 3455689999999999998887777665531 11
Q ss_pred eEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 351 WRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 351 w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
..++.++.++.++|++|+|+++.++|+|+++||.|||++++..++++++.++..+.+|+|.+.|.|++++++
T Consensus 175 -~~~~~~~~~~~v~N~~~~gg~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~ 246 (287)
T PRK13057 175 -RTERVKTLQVAVGNGRYYGGGMTVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTT 246 (287)
T ss_pred -EEEEEEEEEEEEecCcccCCCcccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEee
Confidence 123346667889999999999999999999999999999999999999999999999999999999999986
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.8e-44 Score=354.04 Aligned_cols=250 Identities=22% Similarity=0.312 Sum_probs=213.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+++++||+||.||++++.+.| +++++.|++. ++++++.|++++|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~ 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc
Confidence 478999999999999987777 5888889874 89999999999999999999877889999999999999999999986
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccc
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~ 268 (424)
+ ++|||+||+||+|||||+| |+|.++.+|+..|.+|+.+++|++.++ .++|.+ ++++||+|++..
T Consensus 80 ~-------~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~iDlg~vn---~~~fin-~a~~G~~a~v~~ 144 (300)
T PRK00861 80 T-------DIPLGIIPRGTANAFAAAL----GIPDTIEEACRTILQGKTRRVDVAYCN---GQPMIL-LAGIGFEAETVE 144 (300)
T ss_pred C-------CCcEEEEcCCchhHHHHHc----CCCCCHHHHHHHHHcCCcEEeeEEEEC---CEEEEE-EEeccHHHHHHH
Confidence 4 6899999999999999999 899999999999999999999999997 367766 699999999987
Q ss_pred ccc--ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccC
Q 014455 269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (424)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (424)
..+ +++++|.++|.+.+++.+++.+.|+.++.. +|
T Consensus 145 ~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~--------------------------------------dg----- 181 (300)
T PRK00861 145 EADREAKNRFGILAYILSGLQQLRELESFEVEIET--------------------------------------ED----- 181 (300)
T ss_pred HhhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEE--------------------------------------CC-----
Confidence 654 456789999999999999888888776642 11
Q ss_pred CCCceEEEeeceEEEEeeecccCCCCC-ccCcCCccCCCcEEEEEEcCCChHHHHH----HHHhccCCCcccCCCeEEEE
Q 014455 347 KNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCPKLALFS----LLSNLNKGGHVESPYVAYLK 421 (424)
Q Consensus 347 ~~~~w~~i~g~~~~v~v~N~~~~g~~~-~~aP~A~~~DG~ldliiv~~~s~~~ll~----~l~~~~~G~h~~~p~V~~~k 421 (424)
..++.+..++.++|++++++.+ .-+|+|+++||+|||+++++.+++++++ ++..++.|+|.+.|.|++++
T Consensus 182 -----~~~~~~~~~i~v~N~~~~~~~~~~g~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~ 256 (300)
T PRK00861 182 -----QIITTNAVAVTVANAAPPTSVLAQGPGAVIPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLR 256 (300)
T ss_pred -----eEEEEEEEEEEEECCCCcccccccCCCCCCCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEE
Confidence 1233456678899998654332 1268999999999999999999999985 45567789999999999999
Q ss_pred ee
Q 014455 422 VS 423 (424)
Q Consensus 422 ~k 423 (424)
++
T Consensus 257 ~~ 258 (300)
T PRK00861 257 AK 258 (300)
T ss_pred cc
Confidence 86
No 11
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=2e-44 Score=352.29 Aligned_cols=254 Identities=30% Similarity=0.484 Sum_probs=225.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+++++.+|+||.||++++.+.| +++++.|+.++.++.++.|+..+||.++++++...+||.||++|||||+|||+|||+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 4689999999999999999888 589999999999999999999999999999999889999999999999999999999
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCCCCC-HHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK-ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~-~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv 266 (424)
+++. .||||||+||+|||||+| |+|.+ +.+|++.|.+|+++.+|+++++. ..+|.+ ++++|++|++
T Consensus 80 ~~~~------~~LgilP~GT~NdfAr~L----gip~~~~~~Al~~i~~g~~~~vDlg~~~~--~~~fin-~a~~G~~a~~ 146 (301)
T COG1597 80 GTDD------PPLGILPGGTANDFARAL----GIPLDDIEAALELIKSGETRKVDLGQVNG--RRYFIN-NAGIGFDAEV 146 (301)
T ss_pred cCCC------CceEEecCCchHHHHHHc----CCCchhHHHHHHHHHcCCeEEEeehhcCC--cceEEE-EeecchhHHH
Confidence 9852 239999999999999999 89995 99999999999999999998763 337766 6999999999
Q ss_pred ccccccccc--ccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 014455 267 DIESEKYRW--MGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (424)
Q Consensus 267 ~~~sek~R~--~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (424)
+...+..+| +|.++|.+.++..+..++.++.++.|. +
T Consensus 147 ~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d--------------------------------------~--- 185 (301)
T COG1597 147 VAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYD--------------------------------------G--- 185 (301)
T ss_pred HHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEc--------------------------------------C---
Confidence 998876554 599999999998888888777776541 1
Q ss_pred cCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 345 ~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
. ..+++..++.+.|+.++|+++.++|+|.++||+||++++++.++++++.++..+.+|+|.+++.|+|++++
T Consensus 186 ----~---~~~~~~~~~~~~~~~~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~ 257 (301)
T COG1597 186 ----K---TFEGEALALLVFNGNSYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAK 257 (301)
T ss_pred ----c---EEEEEEEEEEEecCcccccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEecc
Confidence 1 23455677888888999999999999999999999999999999999999999999999999999999876
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=7.8e-44 Score=349.43 Aligned_cols=252 Identities=20% Similarity=0.262 Sum_probs=213.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
.++++++|+||+++. .+.+. ++.+.|+++++++++..|++++|+.++++++..+++|.||++|||||+|||+|+|+
T Consensus 2 ~~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~ 77 (300)
T PRK13054 2 TFPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALA 77 (300)
T ss_pred CCceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHH
Confidence 368999999999763 23464 57778999999999999999999999999987778999999999999999999998
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeeccc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADID 267 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~ 267 (424)
.++. ..++|||+||+||+|+|||+| |+|.++.+|+..|..|+.+++|+++++. .++|.+ ++++||+|++.
T Consensus 78 ~~~~---~~~~~lgiiP~GTgNdfar~l----gi~~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~n-~~~~G~~a~v~ 147 (300)
T PRK13054 78 QLEG---DARPALGILPLGTANDFATAA----GIPLEPDKALKLAIEGRAQPIDLARVND--RTYFIN-MATGGFGTRVT 147 (300)
T ss_pred hhcc---CCCCcEEEEeCCcHhHHHHhc----CCCCCHHHHHHHHHhCCceEEEEEEEcC--ceEEEE-EeecchhHHHH
Confidence 6531 136899999999999999999 8999999999999999999999999973 237866 69999999988
Q ss_pred ccc-c-ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccc
Q 014455 268 IES-E-KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVD 345 (424)
Q Consensus 268 ~~s-e-k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 345 (424)
.+. + .++.+|+++|.+.+++.+++.+.|+.++.. ++
T Consensus 148 ~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d~---- 185 (300)
T PRK13054 148 TETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRG--------------------------------------PD---- 185 (300)
T ss_pred HhhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEe--------------------------------------CC----
Confidence 664 3 334689999999999999988877766541 01
Q ss_pred CCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 346 LKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 346 ~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
. ..++++.++.++|++|+|+++.++|+|+++||+|||+++++ ++.++.+++.+..|++...|.|++++++
T Consensus 186 ---~---~~~~~~~~~~v~N~~~~ggg~~~~p~a~~~DG~ldv~~~~~--~~~~l~~l~~~~~g~~~~~~~v~~~~~~ 255 (300)
T PRK13054 186 ---F---HWQGDALVIGIGNGRQAGGGQQLCPEALINDGLLDLRILPA--PQELLPTLLSTLTGGSEDNPNIIRARLP 255 (300)
T ss_pred ---c---EEEeeEEEEEEECCCcCCCCcccCCCCcCCCCeEEEEEECC--HHHHHHHHHHHHhCCCCCCCcEEEEECC
Confidence 1 12356778889999999999999999999999999999998 6788888888778877679999999875
No 13
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=1e-43 Score=347.51 Aligned_cols=247 Identities=22% Similarity=0.255 Sum_probs=206.1
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
++++|+||.||..+ .|. ++.+.|++++++++++.|++++||.++++++..+++|.||++|||||+|||+|||+.++
T Consensus 1 ~~~~I~N~~~~~~~---~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~ 76 (293)
T TIGR03702 1 KALLILNGKQADNE---DVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIR 76 (293)
T ss_pred CEEEEEeCCccchh---HHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhC
Confidence 47899999987333 453 67788999999999999999999999999987778999999999999999999998754
Q ss_pred CcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccccc
Q 014455 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES 270 (424)
Q Consensus 191 ~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~~s 270 (424)
+. ..+|||+||+||||||||+| |+|.++.+|+..|..|+.+++|++.++. .++|.+ ++++||+|++....
T Consensus 77 ~~---~~~~lgiiP~GTgNdfAr~l----~ip~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f~n-~~~~G~da~v~~~~ 146 (293)
T TIGR03702 77 DD---AAPALGLLPLGTANDFATAA----GIPLEPAKALKLALNGAAQPIDLARVNG--KHYFLN-MATGGFGTRVTTET 146 (293)
T ss_pred CC---CCCcEEEEcCCchhHHHHhc----CCCCCHHHHHHHHHhCCceeeeEEEECC--ccEEEE-EeecccchHhhhhh
Confidence 21 35799999999999999999 8999999999999999999999999972 357866 79999999998653
Q ss_pred --cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccCCC
Q 014455 271 --EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKN 348 (424)
Q Consensus 271 --ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 348 (424)
++++++|.++|.+++++.+.+.+.|+.++.. ++
T Consensus 147 ~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~--------------------------------------~~------- 181 (293)
T TIGR03702 147 SEKLKKALGGAAYLITGLTRFSELTAASCEFRG--------------------------------------PD------- 181 (293)
T ss_pred hHHHHhccchHHHHHHHHHHHhhCCCeEEEEEE--------------------------------------CC-------
Confidence 3445689999999999999887777655431 00
Q ss_pred CceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 349 LEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 349 ~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
..+++++.+++++|++|+|+++.++|.|+++||.|||+++++ ++.++.++..+++|++ .+.+.+++++
T Consensus 182 ---~~~~~~~~~~~v~N~~~~GGg~~i~P~A~~~DG~Ldv~~v~~--~~~~~~~l~~~~~g~~--~~~~~~~~~~ 249 (293)
T TIGR03702 182 ---FHWEGDFLALGIGNGRQAGGGQVLCPDALINDGLLDVRILPA--PELLPATLSTLFGGDK--NPEFVRARLP 249 (293)
T ss_pred ---EEEEeeEEEEEEECCCcCCCCceeCCCCccCCceEEEEEeCC--HHHHHHHHHHHhcCCC--CCcEEEEEcC
Confidence 112446678889999999999999999999999999999988 6788888888888863 4667776653
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=4e-43 Score=343.32 Aligned_cols=253 Identities=27% Similarity=0.353 Sum_probs=219.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
++|+++|+||.||++++.+.+ +++.+.|++.++++++..|+.++|+.++++++...++|.||++|||||+|||+|+|..
T Consensus 1 ~~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~ 79 (293)
T TIGR00147 1 MAEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQ 79 (293)
T ss_pred CceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhc
Confidence 478999999999998888777 4789999999999999999999999888876655689999999999999999999987
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeE-EEEEeeeeeeeeccc
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRF-HSVLMLAWGLVADID 267 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~-f~~~~~~~G~~Adv~ 267 (424)
.. ..+|||+||+||+|+||++| |+|.++.+++..+..|+.+++|++.+++ ++ |.+ ++++|++|++.
T Consensus 80 ~~-----~~~~lgiiP~Gt~N~~a~~l----~i~~~~~~~~~~l~~~~~~~~Dlg~v~~---~~~fln-~~g~G~~a~v~ 146 (293)
T TIGR00147 80 LD-----DIPALGILPLGTANDFARSL----GIPEDLDKAAKLVIAGDARAIDMGQVNK---QYCFIN-MAGGGFGTEIT 146 (293)
T ss_pred CC-----CCCcEEEEcCcCHHHHHHHc----CCCCCHHHHHHHHHcCCceEEEEEEECC---eEEEEE-EEeechhhHhH
Confidence 53 24799999999999999999 8888999999999999999999999973 66 765 79999999987
Q ss_pred ccc--cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccc
Q 014455 268 IES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVD 345 (424)
Q Consensus 268 ~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 345 (424)
... +.++.+|.++|.+++++.+.+.+.|+.++.. ++
T Consensus 147 ~~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d~---- 184 (293)
T TIGR00147 147 TETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRG--------------------------------------EG---- 184 (293)
T ss_pred hhCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------CC----
Confidence 654 2344689999999999988877777665532 11
Q ss_pred CCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 346 LKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 346 ~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
+.++.+..++.++|++++|+++.++|+|+++||.|||+++++.++++++++++.+..|+|.+.|.|++++++
T Consensus 185 ------~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~ 256 (293)
T TIGR00147 185 ------EHWQGEAVVFLVGNGRQAGGGQKLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKAS 256 (293)
T ss_pred ------eEEEeeEEEEEEeCCcccCCCcccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEcc
Confidence 123445667788899999999999999999999999999999999999999999999999999999999886
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=326.97 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=202.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
..++++++|+||+||++++.+.+ +++++.|++. ++++++.|++++|+.++++++..+++|.||++|||||+|||+|+|
T Consensus 240 ~~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 240 NIHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred ccCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHH
Confidence 34678999999999999988777 5889999876 799999999999999999998777899999999999999999999
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhccccCCC---CCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeee
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEP---CKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 263 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p---~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~ 263 (424)
... ++||||||+||+|||||+|+ |+| .++++|+..|.+|+.+++|++.++ .++|.+ ++|+|++
T Consensus 318 ~~~-------~~~lgiiP~GTgNdfAr~L~---gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn---~~~fln-~agiG~d 383 (547)
T PRK12361 318 VNT-------DITLGIIPLGTANALSHALF---GLGSKLIPVEQACDNIIQGHTQRIDTARCN---DRLMLL-LVGIGFE 383 (547)
T ss_pred hcC-------CCCEEEecCCchhHHHHHhc---CCCCCCccHHHHHHHHHhCCCeEEEEEEEc---CeEEEE-EEeechh
Confidence 865 68999999999999999983 344 478999999999999999999997 367765 7999999
Q ss_pred eccccccc--ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 014455 264 ADIDIESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 341 (424)
Q Consensus 264 Adv~~~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 341 (424)
+++..+.+ +++.+|.++|..++++.+.+.+.|+.++.. +|
T Consensus 384 a~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~--------------------------------------dg 425 (547)
T PRK12361 384 QKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTL--------------------------------------DD 425 (547)
T ss_pred HHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEE--------------------------------------CC
Confidence 99987643 456789999999999999888877766642 11
Q ss_pred CcccCCCCceEEEeeceEEEEeeecccCCCCC-ccCcCCccCCCcEEEEEEcCCCh--HHHHHHHHhccCC--CcccCCC
Q 014455 342 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCPK--LALFSLLSNLNKG--GHVESPY 416 (424)
Q Consensus 342 ~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~-~~aP~A~~~DG~ldliiv~~~s~--~~ll~~l~~~~~G--~h~~~p~ 416 (424)
. + ..+.+..++.++|++.+++.. .-.+.++++||.|||+++++.++ .+++.++..+..| +|...|.
T Consensus 426 ~-------~--~~~~~~~~l~v~N~~~~~~~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~ 496 (547)
T PRK12361 426 A-------E--PQTISTHSLVVANAAPFTSLLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANK 496 (547)
T ss_pred C-------C--ceEEEEEEEEEEcCCCcccccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCc
Confidence 0 0 012244556788885442211 01223589999999999998774 5777776665554 5688899
Q ss_pred eEEEEee
Q 014455 417 VAYLKVS 423 (424)
Q Consensus 417 V~~~k~k 423 (424)
|++++++
T Consensus 497 v~~~~~k 503 (547)
T PRK12361 497 VHHAHAK 503 (547)
T ss_pred eEEEEee
Confidence 9999886
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.94 E-value=6e-27 Score=201.88 Aligned_cols=126 Identities=41% Similarity=0.672 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCC-ceEEEEcCCchHHHHHHHhhcC
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~-d~vV~vGGDGTl~evvngL~~~ 189 (424)
|++||+||+||++++. | +++++.|+..+.+++++.|+..+++.++++....+.+ |.||++|||||+|+++|+|+.+
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 5899999999999988 6 6899999999999999999999999999885555666 9999999999999999999988
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHH-HHHHHHhCCeeeeeeEEEE
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~-a~~~i~~g~~~~lDl~~v~ 246 (424)
... .++|||+||+||+|+||++| |+|.++.. ++..+..+..+++|+++++
T Consensus 78 ~~~---~~~~l~iiP~GT~N~~ar~l----g~~~~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 78 DRE---DKPPLGIIPAGTGNDFARSL----GIPSDPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp TSS---S--EEEEEE-SSS-HHHHHT----T--SSHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCC---ccceEEEecCCChhHHHHHc----CCCCCcHHHHHHHHHhCCCcEeEEEEeC
Confidence 532 16799999999999999999 88888888 7888888999999999985
No 17
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.88 E-value=2e-22 Score=172.31 Aligned_cols=106 Identities=32% Similarity=0.417 Sum_probs=80.2
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
+||+||+||++++.+.+ .++++.+... .++.| +...|+.++++++ ..+|.||++|||||+|||+|+|+.+.
T Consensus 1 lvi~NP~sG~~~~~~~~-~~~~~~l~~~----~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLL-RKFRLLLNPA----QVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHH-HHHHHHcCCc----eEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 58999999999988766 4666666543 34444 4455666666665 36899999999999999999998764
Q ss_pred CcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHH
Q 014455 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILA 231 (424)
Q Consensus 191 ~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~ 231 (424)
.. ...+|||+||+||+|+||++| |+|.++..+...
T Consensus 74 ~~--~~~~plgiiP~GTgNdfar~l----gi~~~~~~~~~~ 108 (124)
T smart00046 74 LP--LPEPPVAVLPLGTGNDLARSL----GWGGGYDGEKLL 108 (124)
T ss_pred cc--cCCCcEEEeCCCChhHHHHHc----CCCCCcccccHH
Confidence 21 112899999999999999999 777776655433
No 18
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.87 E-value=5.4e-22 Score=191.54 Aligned_cols=180 Identities=31% Similarity=0.452 Sum_probs=147.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.||||++|++||.+.++.+...|.+...|+|+.+|++++++.|.+.+||+.++.+++. ..|+|+|+|||||+.|||.|+
T Consensus 58 ~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t-~~Dii~VaGGDGT~~eVVTGi 136 (535)
T KOG4435|consen 58 TRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT-QEDIIYVAGGDGTIGEVVTGI 136 (535)
T ss_pred cccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc-CCCeEEEecCCCcHHHhhHHH
Confidence 5789999999999999888877888999999999999999999999999999999874 459999999999999999999
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhcccc----CCCCCHHHHHHHHHhCCe---eeeeeEEEEeCCeeEEEEEeee
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLV----GEPCKASNAILAVIRGHK---RLLDVATILQGKTRFHSVLMLA 259 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~----g~p~~~~~a~~~i~~g~~---~~lDl~~v~~g~~~~f~~~~~~ 259 (424)
+++.. ...|++++|.|--|....+..... ..-..+.+|+++++++.. .++||..-...-.+.|....++
T Consensus 137 ~Rrr~----~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~~gs~l~P~fgl~gls 212 (535)
T KOG4435|consen 137 FRRRK----AQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTTEGSTLAPEFGLGGLS 212 (535)
T ss_pred Hhccc----ccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEeccCCCccccccccCccc
Confidence 99842 379999999999987665543211 111245678899999987 5667665211113578888999
Q ss_pred eeeeecccccccccccccchhhHHHHHHHHHh
Q 014455 260 WGLVADIDIESEKYRWMGSARIDFYALQRILY 291 (424)
Q Consensus 260 ~G~~Adv~~~sek~R~~G~~ry~~~~l~~l~~ 291 (424)
||..-|+.....||.++|+++-.++.+..++.
T Consensus 213 wG~frdi~~~~~KyWYfgplk~~aA~f~s~lk 244 (535)
T KOG4435|consen 213 WGWFRDIEDTRKKYWYFGPLKRRAAYFWSMLK 244 (535)
T ss_pred hhhhhhhhhhhhheeeecHHHHHHHHHHHHHh
Confidence 99999999888899999999877777776664
No 19
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.82 E-value=1.6e-19 Score=186.12 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=121.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
-..++||+||+||.+.+..+. ..++.+|....+ +++-.+..+.-+..+.+++. +..|+|||||||+-.|++.+-+
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~~---~~riLVcGGDGTvGWVL~~i~~ 345 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDVP---DFRILVCGGDGTVGWVLGCIDK 345 (634)
T ss_pred CcceEEEEecCCcccccHHHH-HHHHHhcChhhE-EecccCCCCchhHHHHHhCC---cceEEEecCCCcchhhhhhHHH
Confidence 357999999999999998765 577777776542 44444444666667777653 4599999999999999999966
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCC---HHHHHHHHHhCCeeeeeeEEEEe----CC------------
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK---ASNAILAVIRGHKRLLDVATILQ----GK------------ 249 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~---~~~a~~~i~~g~~~~lDl~~v~~----g~------------ 249 (424)
-........+|+||+|+|||||++|.|+|..|.|.. +...+..|..+.+..+|=.+|.. +.
T Consensus 346 ~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~ 425 (634)
T KOG1169|consen 346 LNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKG 425 (634)
T ss_pred hhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCCcC
Confidence 422222347899999999999999999998777765 77888899999999999888752 11
Q ss_pred --e-eEEEEEeeeeeeeecccccccccc
Q 014455 250 --T-RFHSVLMLAWGLVADIDIESEKYR 274 (424)
Q Consensus 250 --~-~~f~~~~~~~G~~Adv~~~sek~R 274 (424)
. ..+.++.+|+|+||.|.++....|
T Consensus 426 ~~~~~~imnNYFSIGvDA~Ia~~FH~~R 453 (634)
T KOG1169|consen 426 DPVPYGIMNNYFSIGVDAQIAYGFHNMR 453 (634)
T ss_pred CCCCeeeEeeeeeecccHHHHHHHHHHh
Confidence 0 234456899999999998765444
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.74 E-value=1.7e-17 Score=166.03 Aligned_cols=157 Identities=23% Similarity=0.251 Sum_probs=118.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+-++.++||+||+||..++.+++ ..+.-+|....+ +++- ...+..|.|+-++.. .-.|++||||||+..++.-|
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~l-q~f~WyLNPRQV-FDls-q~GPK~aLEmyRKV~---nLRILaCGGDGTVGWiLStL 436 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKAL-QTFCWYLNPRQV-FDLS-QLGPKFALEMYRKVV---NLRILACGGDGTVGWILSTL 436 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHH-HHHHHhcChhhh-eehh-ccCcHHHHHHHHhcc---ceEEEEecCCCceeehhhhh
Confidence 44678999999999999998776 466667765543 3332 347888888888764 36899999999999999988
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCH-HHHHHHHHhCCeeeeeeEEEEe-------------CCe--
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKA-SNAILAVIRGHKRLLDVATILQ-------------GKT-- 250 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~-~~a~~~i~~g~~~~lDl~~v~~-------------g~~-- 250 (424)
-.-.- ...+|+||+|.|||||+||+|+|..|....+ ...+.++..|.+..+|-+.+.- |-.
T Consensus 437 D~L~l---~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~ 513 (1004)
T KOG0782|consen 437 DNLNL---PPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSA 513 (1004)
T ss_pred hhcCC---CCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhc
Confidence 55421 2368999999999999999999876665544 5566778889999999888751 100
Q ss_pred ---eEEEEEeeeeeeeeccccccccc
Q 014455 251 ---RFHSVLMLAWGLVADIDIESEKY 273 (424)
Q Consensus 251 ---~~f~~~~~~~G~~Adv~~~sek~ 273 (424)
..|. +.+++||+|.|..+....
T Consensus 514 LPL~Vfn-NYFSlGfDAHVtLeFHeS 538 (1004)
T KOG0782|consen 514 LPLTVFN-NYFSLGFDAHVTLEFHES 538 (1004)
T ss_pred cchhHhh-ccccccccceEEEEeccc
Confidence 1354 478999999998765433
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.12 E-value=5.4e-11 Score=106.16 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=77.8
Q ss_pred Eeeeeeeeeccccccc--c--------cccccchhhHHHHHHHHHhcc--c--cceEEEEecCCCCCCCCCCCcccccCc
Q 014455 256 LMLAWGLVADIDIESE--K--------YRWMGSARIDFYALQRILYLR--Q--YNGRVSFVPAPGFENHGEPSTYSEQNI 321 (424)
Q Consensus 256 ~~~~~G~~Adv~~~se--k--------~R~~G~~ry~~~~l~~l~~~r--~--y~~~i~~~~~~~~~~~~~~~~~~~~~~ 321 (424)
+++|+||+|+|....+ + +|++|.++|.+.+++.++..+ . ++.++.+
T Consensus 4 N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~-------------------- 63 (160)
T smart00045 4 NYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELEC-------------------- 63 (160)
T ss_pred ccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEE--------------------
Confidence 3699999999987542 2 246799999999998886532 1 2223221
Q ss_pred CCCCCCCCCcccccccccCCCcccCCCCceEEEeeceEEEEeeecccCCCCCccC----------cCCccCCCcEEEEEE
Q 014455 322 CNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAA----------PDAKFSDGYLDLIII 391 (424)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~a----------P~A~~~DG~ldliiv 391 (424)
+|... ..+....++.++|++++|+|+.++ |+|+++||.||++++
T Consensus 64 ------------------dg~~~--------~~~~~~~~v~v~N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~~ 117 (160)
T smart00045 64 ------------------DGVDV--------DLPNSLEGIAVLNIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVGL 117 (160)
T ss_pred ------------------CCEec--------cCCCCccEEEEECCCccccCcccccCCcccccccCCCCCCCceEEEEEE
Confidence 12100 011124567899999999999999 899999999999999
Q ss_pred cCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 392 KDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 392 ~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
++.+++.++. |...+.+++.+++
T Consensus 118 ~~~~~~~~~~---------~~~~~~v~~~~~~ 140 (160)
T smart00045 118 TGAMHMAQIR---------QVGLAGRRIAQCS 140 (160)
T ss_pred cCchhhhhhh---------hccCCCceeecCc
Confidence 9987775442 3445566666554
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=99.09 E-value=6.6e-10 Score=107.62 Aligned_cols=112 Identities=20% Similarity=0.238 Sum_probs=83.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHH-HHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~-~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|+.++.|+ ++..+.+.+ +++...|++.++++.+.. ++..+++...+ ..+...++|.||++|||||+.++++ +
T Consensus 1 m~v~iv~~~--~k~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~ 76 (277)
T PRK03708 1 MRFGIVARR--DKEEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-K 76 (277)
T ss_pred CEEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-h
Confidence 468888888 445566555 689999999999887752 33333322222 1333347899999999999999999 7
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
... ++|+..||+|+. +|...+ . |.++.+++..+.+|...
T Consensus 77 ~~~-------~~pi~gIn~G~l-GFl~~~----~-~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 77 TKK-------DIPILGINMGTL-GFLTEV----E-PEETFFALSRLLEGDYF 115 (277)
T ss_pred cCC-------CCeEEEEeCCCC-CccccC----C-HHHHHHHHHHHHcCCce
Confidence 654 689999999999 888887 3 66788899999998643
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.95 E-value=4.3e-09 Score=103.47 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+.+++++|+|| |+..+.+.. +++...|++.|+++.+..++...++.....+.....+|.||++|||||++++++.+.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~ 78 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLA 78 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhc
Confidence 46789999999 555666555 578888999999988776655443322222222346899999999999999999996
Q ss_pred cCcCcccccCCcEEEecC-CChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 188 EREDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~-GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
.. .+|+..|.+ |+-.-++..- ....+ .+++..+.+|...
T Consensus 79 ~~-------~~pv~gin~~G~lGFL~~~~----~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 79 PH-------DIPILSVNVGGHLGFLTHPR----DLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred cC-------CCCEEEEecCCcceEecCch----hhcch-HHHHHHHHcCCce
Confidence 54 689999998 7766665321 11223 6789999998643
No 24
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.57 E-value=2.6e-07 Score=89.77 Aligned_cols=73 Identities=27% Similarity=0.309 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhh-hhhccccCCCCCHHHH
Q 014455 150 TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI-KSLLDLVGEPCKASNA 228 (424)
Q Consensus 150 ~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~A-r~l~~~~g~p~~~~~a 228 (424)
+...+...+++++...+.|.|+.+|||||...|++++ . .++|+-=||+|+-|.+. ..+ .|.+....
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av-~-------~~vPvLGipaGvk~~SgvfA~-----~P~~aa~l 150 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV-G-------ADVPVLGIPAGVKNYSGVFAL-----SPEDAARL 150 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc-c-------CCCceEeeccccceecccccc-----ChHHHHHH
Confidence 4456777888998878999999999999999999999 2 27999999999999886 333 34444455
Q ss_pred HHHHHhC
Q 014455 229 ILAVIRG 235 (424)
Q Consensus 229 ~~~i~~g 235 (424)
+..+++|
T Consensus 151 ~~~~lkg 157 (355)
T COG3199 151 LGAFLKG 157 (355)
T ss_pred HHHHhcc
Confidence 5667777
No 25
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.37 E-value=2.2e-06 Score=83.89 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=76.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC---hhhHHHHH--HHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIV--KVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~---~~~a~~l~--~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
++++.||+||.. ..+.+.+ +++...|++.++++.+..++. +.++.... ..+ ..++|.||++|||||+.+++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 79 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDGSLLGAA 79 (295)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcHHHHHHH
Confidence 567999999866 4455445 578888999999887765433 11111111 122 24689999999999999999
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
+.+... ++|+--|.+|+-. |-..+ .+.+..+++..+.+|..
T Consensus 80 ~~~~~~-------~~Pvlgin~G~lG-Fl~~~-----~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 80 RALARH-------NVPVLGINRGRLG-FLTDI-----RPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHhcCC-------CCCEEEEeCCccc-ccccC-----CHHHHHHHHHHHHcCCc
Confidence 988643 6787778888754 33333 24567788999998853
No 26
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.33 E-value=1.2e-06 Score=85.53 Aligned_cols=112 Identities=21% Similarity=0.254 Sum_probs=76.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh-HHH--H--HHHhccCCCceEEEEcCCchHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKE--I--VKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~-a~~--l--~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
..+++.+|.||.. ..+.+.. +++...|++.|+++.+........ ... . ..++ ..+.|.||++|||||+..+
T Consensus 4 ~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~L~a 79 (292)
T PRK03378 4 HFKCIGIVGHPRH--PTALTTH-EMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNMLGA 79 (292)
T ss_pred cCCEEEEEEeCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHHHHH
Confidence 3678999999854 4455444 588888999998776533111000 000 0 0122 2368999999999999999
Q ss_pred HHHhhcCcCcccccCCcEEEecCCChh-hhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAGTGN-GMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~GTgN-~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
++.+... . +.+||.++|| +|...+ . |.++.+++..|.+|..
T Consensus 80 a~~~~~~-------~--~Pilgin~G~lGFl~~~----~-~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 80 ARVLARY-------D--IKVIGINRGNLGFLTDL----D-PDNALQQLSDVLEGHY 121 (292)
T ss_pred HHHhcCC-------C--CeEEEEECCCCCccccc----C-HHHHHHHHHHHHcCCc
Confidence 9988653 3 4478888899 888887 3 5678889999999864
No 27
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=98.09 E-value=1.4e-06 Score=91.73 Aligned_cols=127 Identities=19% Similarity=0.242 Sum_probs=79.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
..++|++|.+||...+.+.. ++.+.+|.-..+ +++. -..+.-+..+-..++ --.|+||||||++..|+..+..-
T Consensus 195 spllv~insksgd~qg~~~l-rkfkq~lnp~qV-fdll-~~gp~~gL~~f~~~d---~friLvcggdGsv~wvls~~ds~ 268 (1099)
T KOG1170|consen 195 SPLLVFINSKSGDSQGQRFL-RKFKQILNPIQV-FDLI-AGGPDFGLTFFSHFE---SFRILVCGGDGSVGWVLSAIDRL 268 (1099)
T ss_pred CceeEeecccCCCchhHHHH-HhhhhhcCHHHH-HHHH-ccCcchhhhhhhccc---ceEEEEecCCCCCcchHHHHHhc
Confidence 46999999999999987644 567666654332 1111 122222333222221 23689999999999999887554
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhccccCCCCC--HHHHHHHHHhCCeeeeeeEEE
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK--ASNAILAVIRGHKRLLDVATI 245 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~--~~~a~~~i~~g~~~~lDl~~v 245 (424)
.-. .+.-++++|.|||||+||.|+|....+.+ ....++..-+..++.+|=.++
T Consensus 269 ~lh---~kcql~vlplgtgndlarvlgwg~a~~ddt~~p~il~~~eRastkmldrwsv 323 (1099)
T KOG1170|consen 269 NLH---SKCQLAVLPLGTGNDLARVLGWGHAFYDDTLLPQILRTMERASTKMLDRWSV 323 (1099)
T ss_pred cch---hhcccccccCCChHHHHHHhcccccCchhhccHHHHHHHHhhhhhhhhcchh
Confidence 221 36889999999999999999874222221 123344444455666664443
No 28
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.95 E-value=3.6e-05 Score=75.57 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=78.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH---HHH-----------HHHhccCCCceEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA---KEI-----------VKVLDLSKYDGIVC 172 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a---~~l-----------~~~~~~~~~d~vV~ 172 (424)
.+++++.+|.||.. ..+.+.. +++...|++.|+++.+.......-. ... ...+ .+..|.||+
T Consensus 3 ~~~~~I~iv~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTGR--DEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEE
Confidence 46788999999844 4455444 6888889999988766542211000 000 0122 236899999
Q ss_pred EcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 173 vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
+|||||+-.++..+... .+|+--|..|+-.-++.. .|.++.+++..+.+|...
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~G~lGFL~~~------~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNLGHVGFLAEA------EAEDLDEAVERVVDRDYR 131 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEecCCCceeccC------CHHHHHHHHHHHHcCCce
Confidence 99999999999987654 678888999987555442 245778899999998743
No 29
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.94 E-value=5.9e-05 Score=73.77 Aligned_cols=112 Identities=13% Similarity=0.137 Sum_probs=75.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHH---HH-HHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKE---IV-KVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~---l~-~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
++++.+|.|+.. ..+.+.. +.+...|+..++++.+...+... ++.+ .. +++ ...+|.||++|||||+.+++
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 80 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTMLGIG 80 (291)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHHHHHH
Confidence 567999988855 4555445 57888899899886654332210 1100 01 222 23689999999999999999
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
+.+... ++|+-=|.+|+-.-++ .. .+.++.+++..+.+|..
T Consensus 81 ~~~~~~-------~~pilGIn~G~lGFL~-~~-----~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 81 RQLAPY-------GVPLIGINHGRLGFIT-DI-----PLDDMQETLPPMLAGNY 121 (291)
T ss_pred HHhcCC-------CCCEEEEcCCCccccc-cC-----CHHHHHHHHHHHHcCCc
Confidence 998654 5677668888765444 32 23467788899998865
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.89 E-value=1.1e-05 Score=78.87 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=73.0
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcCChh----------------------hHHHHHHHhccCCC
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQL----------------------HAKEIVKVLDLSKY 167 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~~~~----------------------~a~~l~~~~~~~~~ 167 (424)
|+.||.||. +..+.+.. +++..+|.+. ++.+-+...-... +......+...+++
T Consensus 1 kVgii~np~--~~~~~~~~-~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
T PF01513_consen 1 KVGIIANPN--KPEAIELA-NELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGV 77 (285)
T ss_dssp -EEEEESSC--GHCCCHHH-HHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCS
T ss_pred CEEEEEcCC--CHHHHHHH-HHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCC
Confidence 578999998 33444444 5788888888 5443322110000 00011122334689
Q ss_pred ceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 168 d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
|.||++|||||+-.+++.+... .+|+--|+.||-|-|+. + .+.+...++..+.+|...
T Consensus 78 D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~G~lgfl~~-~-----~~~~~~~~l~~~~~g~~~ 135 (285)
T PF01513_consen 78 DLIIVLGGDGTFLRAARLFGDY-------DIPILGINTGTLGFLTE-F-----EPEDIEEALEKILAGEYS 135 (285)
T ss_dssp SEEEEEESHHHHHHHHHHCTTS-------T-EEEEEESSSSTSSSS-E-----EGCGHHHHHHHHHHTHCE
T ss_pred CEEEEECCCHHHHHHHHHhccC-------CCcEEeecCCCcccccc-C-----CHHHHHHHHHHHhcCCeE
Confidence 9999999999999999998764 68999999999554443 3 245788889999987544
No 31
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.67 E-value=0.00018 Score=70.70 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=73.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh--hhHH--------H----HHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAK--------E----IVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~--~~a~--------~----l~~~~~~~~~d~vV~vG 174 (424)
++++.++.||.. ..+.+.. +++...|++.|+++.+...... ++.. + -...+. ...|.||++|
T Consensus 1 m~~igiv~n~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iG 76 (305)
T PRK02649 1 MPKAGIIYNDGK--PLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLG 76 (305)
T ss_pred CCEEEEEEcCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEe
Confidence 467899999843 4455544 5888899999988765432110 0000 0 001221 3589999999
Q ss_pred CCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
||||+-.++.-+... .+|+--|.+|+-.-++. + .+.++.+++..+.+|..
T Consensus 77 GDGTlL~aar~~~~~-------~iPilGIN~G~lGFLt~-~-----~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 77 GDGTVLSAARQLAPC-------GIPLLTINTGHLGFLTE-A-----YLNQLDEAIDQVLAGQY 126 (305)
T ss_pred CcHHHHHHHHHhcCC-------CCcEEEEeCCCCccccc-C-----CHHHHHHHHHHHHcCCc
Confidence 999999999987654 57776677886443333 2 24567788999999864
No 32
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.62 E-value=0.00041 Score=67.97 Aligned_cols=113 Identities=15% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh----------hhHHHHHHHhccCCCceEEEEcCCc
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
.++++.+|.||.. ..+.+.. +++...|++.|+++.+...... ++...-..++. ...|.||++||||
T Consensus 4 ~~~~i~ii~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDG 79 (296)
T PRK04539 4 PFHNIGIVTRPNT--PDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDG 79 (296)
T ss_pred CCCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcH
Confidence 3678999999855 4555544 5888899999988766432111 11000001222 3589999999999
Q ss_pred hHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
|+-.++..+... .+|+-=|-.|+-.-++. + .+.+..+++..+.+|+.
T Consensus 80 T~L~aa~~~~~~-------~~PilGIN~G~lGFL~~-~-----~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 80 TFLSVAREIAPR-------AVPIIGINQGHLGFLTQ-I-----PREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHHhccc-------CCCEEEEecCCCeEeec-c-----CHHHHHHHHHHHHcCCc
Confidence 999999988654 57776677887333332 1 24467778889998854
No 33
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.58 E-value=0.00047 Score=67.27 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=72.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh--hH-HHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HA-KEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~--~a-~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.++++.++.||. + .+.+.. +++...|++.++++.+....... .. ... .++ ..++|.||++|||||+-.+++
T Consensus 9 ~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~-~~~~Dlvi~iGGDGT~L~aa~ 82 (287)
T PRK14077 9 NIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGL-DEL-FKISDFLISLGGDGTLISLCR 82 (287)
T ss_pred cCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccch-hhc-ccCCCEEEEECCCHHHHHHHH
Confidence 467899999996 3 555544 68889999999877654321110 00 000 122 136899999999999999988
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCC
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 236 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~ 236 (424)
-+... .+|+--|.+|+---++. + .+.+..+++..+.+|.
T Consensus 83 ~~~~~-------~~PilGIN~G~lGFLt~-~-----~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 83 KAAEY-------DKFVLGIHAGHLGFLTD-I-----TVDEAEKFFQAFFQGE 121 (287)
T ss_pred HhcCC-------CCcEEEEeCCCcccCCc-C-----CHHHHHHHHHHHHcCC
Confidence 87654 57766677776333332 1 2446778889999986
No 34
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.57 E-value=0.00067 Score=72.53 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH----Hhc
Q 014455 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK----VLD 163 (424)
Q Consensus 88 ~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~----~~~ 163 (424)
+++..+...+.+++.. ..+|+++.||.||.. ..+.+.. +++...|.+.++++.+..........++.. ..+
T Consensus 271 ~~~l~~~l~~~l~~~w--~~~~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 345 (569)
T PRK14076 271 NEILHKKLVGIFGNKW--RIKPTKFGIVSRIDN--EEAINLA-LKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDD 345 (569)
T ss_pred CHHHHHHHHHhhhhhc--ccCCcEEEEEcCCCC--HHHHHHH-HHHHHHHHHCCCEEEEechhhhhhccccccccccccc
Confidence 3444444444443332 368999999999853 4455444 588888988888776543211100000000 011
Q ss_pred cCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 164 LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 164 ~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
..+.|.||+.|||||+-.++.-+... .+|+-=|.+|+-.-++. + .+.++.+++..+.+|..
T Consensus 346 ~~~~dlvi~lGGDGT~L~aa~~~~~~-------~~PilGin~G~lGFL~~-~-----~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 346 IEEISHIISIGGDGTVLRASKLVNGE-------EIPIICINMGTVGFLTE-F-----SKEEIFKAIDSIISGEY 406 (569)
T ss_pred ccCCCEEEEECCcHHHHHHHHHhcCC-------CCCEEEEcCCCCCcCcc-c-----CHHHHHHHHHHHHcCCc
Confidence 23679999999999999999987653 57877788898555442 2 24577888999999864
No 35
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=97.55 E-value=0.00027 Score=63.03 Aligned_cols=100 Identities=13% Similarity=0.179 Sum_probs=64.0
Q ss_pred EEEEeeeeeeeeccccccccc----------ccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcC
Q 014455 253 HSVLMLAWGLVADIDIESEKY----------RWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNIC 322 (424)
Q Consensus 253 f~~~~~~~G~~Adv~~~sek~----------R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~ 322 (424)
|.| .+|+|+||.|..+.++. |+++.+.|...+++.++..+...- . ..+
T Consensus 2 ~~N-YfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~--~-----------~~i-------- 59 (161)
T PF00609_consen 2 MNN-YFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNL--P-----------KKI-------- 59 (161)
T ss_pred eEe-cccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCc--h-----------hhc--------
Confidence 444 68999999999875433 456788888888888873221100 0 000
Q ss_pred CCCCCCCCcccccccccCCCcccCCCCceEEEeeceEEEEeeecccCCCCCccCcC------------CccCCCcEEEEE
Q 014455 323 NPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPD------------AKFSDGYLDLII 390 (424)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~------------A~~~DG~ldlii 390 (424)
.+..++..+ .+......+.+.|.|+|++|..+.+. ..++||.|+|+.
T Consensus 60 -------------~l~~dg~~~--------~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg 118 (161)
T PF00609_consen 60 -------------ELEVDGKEV--------DLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVG 118 (161)
T ss_pred -------------ccccCCeeE--------eeecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEE
Confidence 011222211 23334567889999999999766544 566999999999
Q ss_pred EcCCC
Q 014455 391 IKDCP 395 (424)
Q Consensus 391 v~~~s 395 (424)
+++.-
T Consensus 119 ~~~~~ 123 (161)
T PF00609_consen 119 FRGSF 123 (161)
T ss_pred EcCch
Confidence 99643
No 36
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.49 E-value=0.00076 Score=65.97 Aligned_cols=111 Identities=15% Similarity=0.279 Sum_probs=71.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hH-------H-HH--HHHhccCCCceEEEEcCCch
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HA-------K-EI--VKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a-------~-~l--~~~~~~~~~d~vV~vGGDGT 178 (424)
+++.+|.||.. ..+.+.. +++...|++.|+++.+....... .. . .. ..++. +.+|.||++|||||
T Consensus 1 m~igii~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQ--ESASPYI-QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDGT 76 (292)
T ss_pred CEEEEEeCCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcHH
Confidence 46888989844 4455444 68888899999887654321100 00 0 00 02222 36899999999999
Q ss_pred HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
+-.++.-+... ++|+-=|..|+-. |-..+ .|.+..+++..+.+|..
T Consensus 77 ~L~aa~~~~~~-------~~PilGIN~G~lG-FLt~~-----~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 FLRTATYVGNS-------NIPILGINTGRLG-FLATV-----SKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHHhcCC-------CCCEEEEecCCCC-ccccc-----CHHHHHHHHHHHHcCCc
Confidence 99999988654 5777667888743 32222 24567788999999864
No 37
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.48 E-value=0.00049 Score=66.26 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+++.++.|+.. .+.++. +++..+|++.|+++.+. ..+.|.||++|||||+-.+++.+...
T Consensus 3 ~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~----------------~~~~D~vi~lGGDGT~L~a~~~~~~~ 62 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH----------------PKNANIIVSIGGDGTFLQAVRKTGFR 62 (264)
T ss_pred cEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC----------------CCCccEEEEECCcHHHHHHHHHhccc
Confidence 46788888766 445444 68899999999866421 13579999999999999998887543
Q ss_pred cCcccccCCcEEEecC-CChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 190 EDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~-GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
. .+|+--|.. |+-.-++. + .+.++.+++..+.+|..
T Consensus 63 ~------~~pilgIn~~G~lGFL~~-~-----~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 63 E------DCLYAGISTKDQLGFYCD-F-----HIDDLDKMIQAITKEEI 99 (264)
T ss_pred C------CCeEEeEecCCCCeEccc-C-----CHHHHHHHHHHHHcCCc
Confidence 1 466544566 65444432 2 24467788889998864
No 38
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=97.47 E-value=0.00052 Score=70.94 Aligned_cols=116 Identities=13% Similarity=0.235 Sum_probs=73.4
Q ss_pred hcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHH-hcCCeEEEEEcCCh---------hhHH-----HHHHHhccCCCce
Q 014455 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQ---------LHAK-----EIVKVLDLSKYDG 169 (424)
Q Consensus 105 ~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~-~ag~~~~v~~T~~~---------~~a~-----~l~~~~~~~~~d~ 169 (424)
....|++++||.||.. ..+.+.. .++...|+ ..|+++.+...... +... +-..++. .++|.
T Consensus 190 w~~~p~~VgIV~n~~k--~~a~el~-~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~Dl 265 (508)
T PLN02935 190 WESDPQTVLIITKPNS--TSVRVLC-AEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLH-TKVDL 265 (508)
T ss_pred ecCCCCEEEEEecCCC--HHHHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcc-cCCCE
Confidence 3467999999999955 4444444 57788887 47776655321110 0000 0001121 36899
Q ss_pred EEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 170 vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
||++|||||+-.++.-+... .+||--|..|+-- |-..+ .+.+..+++..|.+|..
T Consensus 266 VIsiGGDGTlL~Aar~~~~~-------~iPILGIN~G~LG-FLt~i-----~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKGP-------VPPVVPFSMGSLG-FMTPF-----HSEQYRDCLDAILKGPI 320 (508)
T ss_pred EEEECCcHHHHHHHHHhccC-------CCcEEEEeCCCcc-eeccc-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999887653 5676667777633 32222 34567788999999853
No 39
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.40 E-value=0.00087 Score=64.63 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
++.+|.|+ +.++.+.. ++++..|+..|+++. .+++|.||++|||||+-.++..+....
T Consensus 2 ~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~~~~Dlvi~iGGDGT~L~a~~~~~~~~ 59 (265)
T PRK04885 2 KVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------EKNPDIVISVGGDGTLLSAFHRYENQL 59 (265)
T ss_pred EEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------CcCCCEEEEECCcHHHHHHHHHhcccC
Confidence 57778773 34555544 688888988887631 136799999999999999999886521
Q ss_pred CcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 191 ~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
.++|+-=|.+|+-.-++ .+ .|.+..+++..+.+|..
T Consensus 60 -----~~iPilGIN~G~lGFL~-~~-----~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 60 -----DKVRFVGVHTGHLGFYT-DW-----RPFEVDKLVIALAKDPG 95 (265)
T ss_pred -----CCCeEEEEeCCCceecc-cC-----CHHHHHHHHHHHHcCCc
Confidence 15787778888744444 33 34567788999999864
No 40
>PLN02727 NAD kinase
Probab=97.29 E-value=0.0014 Score=71.86 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=87.0
Q ss_pred EeecCCCcccccCCCCceEEeeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHh
Q 014455 60 AVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED 139 (424)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ 139 (424)
|+++ .++++|.. .+-....+.|.+.+.+. ..+.+..++++++||.+|.. .+.... .++...|..
T Consensus 641 ~~~~-t~~~~c~~--~~~~~~~~~~~~~s~~~---------~~l~W~~p~rtVgIV~K~~~---ea~~~~-~eL~~~L~~ 704 (986)
T PLN02727 641 FLVR-TDGFSCTR--EKVTESSLAFTHPSTQQ---------QMLMWKSTPKTVLLLKKLGQ---ELMEEA-KEVASFLYH 704 (986)
T ss_pred EEEE-ecCcceee--hhhccccccccCcchhc---------eeeecCCCCCEEEEEcCCcH---HHHHHH-HHHHHHHHh
Confidence 3444 46777753 22222344455544331 11233467999999999976 344444 578888887
Q ss_pred c-CCeEEEEEcCChhhHH-HH-------------HHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 140 A-NIQFTVQETTQQLHAK-EI-------------VKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 140 a-g~~~~v~~T~~~~~a~-~l-------------~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
. ++++-+. +...+.. .+ ..++. ...|.||++|||||+-.+++-+... .+||-=|.
T Consensus 705 ~~gi~V~VE--~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DLVIvLGGDGTlLrAar~~~~~-------~iPILGIN 774 (986)
T PLN02727 705 QEKMNVLVE--PDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDFVACLGGDGVILHASNLFRGA-------VPPVVSFN 774 (986)
T ss_pred CCCeEEEEe--cchHHHhhccccccccceecccchhhcc-cCCCEEEEECCcHHHHHHHHHhcCC-------CCCEEEEe
Confidence 6 7665332 2221111 00 01111 3689999999999999999987654 57877788
Q ss_pred CCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 205 AGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 205 ~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
.|+---++- + .+.+..+++..|++|..
T Consensus 775 lGrLGFLTd-i-----~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 775 LGSLGFLTS-H-----YFEDFRQDLRQVIHGNN 801 (986)
T ss_pred CCCcccccc-C-----CHHHHHHHHHHHHcCCc
Confidence 886433332 1 23456678888888863
No 41
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.97 E-value=0.0096 Score=57.14 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=62.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+|+.+|-||.. ++.+ +.++++..++..++ ..+.+|.||++|||||+-.++.-+...
T Consensus 1 ~~~~i~~~~~~---~s~~-~~~~l~~~~~~~~~--------------------~~~~~D~vi~iGGDGT~L~a~~~~~~~ 56 (259)
T PRK00561 1 MKYKIFASTTP---QTEP-VLPKLKKVLKKKLA--------------------VEDGADYLFVLGGDGFFVSTAANYNCA 56 (259)
T ss_pred CEEEEEeCCCH---HHHH-HHHHHHHHHhhCCC--------------------ccCCCCEEEEECCcHHHHHHHHHhcCC
Confidence 36888888765 3333 22456666654321 125689999999999999998887643
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHH-HHHHHHhCCeeeeeeEEEE
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~-a~~~i~~g~~~~lDl~~v~ 246 (424)
++|+--|.+|+-.-++. + .|.+..+ .+..+.+.......+.++.
T Consensus 57 -------~iPilGIN~G~lGFL~~-~-----~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 57 -------GCKVVGINTGHLGFYTS-F-----NETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred -------CCcEEEEecCCCccccc-c-----CHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 67877788886433332 2 2334555 5555555555555555554
No 42
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.84 E-value=0.018 Score=55.36 Aligned_cols=97 Identities=18% Similarity=0.086 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+++.|+.+|.+ .+.+ ++++..|.+.|+.+..... .. .. ....|.||++|||||+-.++..+
T Consensus 1 m~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~~~~~~--~~-------~~-~~~~d~vi~iGGDGT~L~a~~~~--- 61 (256)
T PRK14075 1 MKLGIFYREEK-----EKEA-KFLKEKISKEHEVVEFCEA--SA-------SG-KVTADLIIVVGGDGTVLKAAKKV--- 61 (256)
T ss_pred CEEEEEeCccH-----HHHH-HHHHHHHHHcCCeeEeecc--cc-------cc-cCCCCEEEEECCcHHHHHHHHHc---
Confidence 46777766663 3344 5788889888876543321 11 11 24679999999999999888876
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
++|+--|.+|+-.-++. + .+.+..+++..+.+|...
T Consensus 62 -------~~Pilgin~G~lGfl~~-~-----~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 -------GTPLVGFKAGRLGFLSS-Y-----TLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred -------CCCEEEEeCCCCccccc-c-----CHHHHHHHHHHHHcCCcE
Confidence 25655567776333332 2 234567888888888643
No 43
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.73 E-value=0.0044 Score=59.99 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHH-HHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~-~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+++.+++||.. ..+.+.. +++...| ..++++.+.. ......... ......+.|.||++|||||+-.+++.+
T Consensus 1 m~i~iv~~~~~--~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~-- 72 (271)
T PRK01185 1 MKVAFVIRKDC--KRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA-- 72 (271)
T ss_pred CEEEEEecCCC--HHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc--
Confidence 35888999744 4445444 5777777 4676654422 111110000 011112689999999999998877644
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
..|+--|..|+-.-++ .+ .+.+..+++..+.+|..
T Consensus 73 --------~~PilGIN~G~lGFL~-~~-----~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 --------KGPILGINMGGLGFLT-EI-----EIDEVGSAIKKLIRGEY 107 (271)
T ss_pred --------CCCEEEEECCCCccCc-cc-----CHHHHHHHHHHHHcCCc
Confidence 1355556888754444 32 24567788899999863
No 44
>PLN02929 NADH kinase
Probab=96.71 E-value=0.0086 Score=58.59 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCC---
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT--- 207 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GT--- 207 (424)
+.++.+|+++|+++..+. +.+ + ++. ....|.||++|||||+-.+++-+ .. .+|+-=|-.|.
T Consensus 37 ~~~~~~L~~~gi~~~~v~--r~~----~-~~~-~~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~Gp~~~ 100 (301)
T PLN02929 37 NFCKDILQQKSVDWECVL--RNE----L-SQP-IRDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNSDPTQK 100 (301)
T ss_pred HHHHHHHHHcCCEEEEee--ccc----c-ccc-cCCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEECCCccc
Confidence 578899999998875433 211 1 221 24789999999999999998887 43 46654466663
Q ss_pred ------hhhhh--hhhccccC-CCCCHHHHHHHHHhCCee
Q 014455 208 ------GNGMI--KSLLDLVG-EPCKASNAILAVIRGHKR 238 (424)
Q Consensus 208 ------gN~~A--r~l~~~~g-~p~~~~~a~~~i~~g~~~ 238 (424)
.|.|- ++++.-.. .+.+..+++..+.+|...
T Consensus 101 ~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~ 140 (301)
T PLN02929 101 DEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLK 140 (301)
T ss_pred ccccccccccccccCccccccCCHHHHHHHHHHHHcCCce
Confidence 12221 23322111 244677888999998644
No 45
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.85 E-value=0.022 Score=55.09 Aligned_cols=91 Identities=15% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh--hhHH----HHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ--LHAK----EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~--~~a~----~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+++...|++.|+++.+...... ++.. .. .++. .++|.||++|||||+-.++.-+... ++|+--|.
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~-~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn 73 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASL-EEIG-QRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGIN 73 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCCh-HHhC-cCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEe
Confidence 4677788888887765432110 1000 00 2222 3689999999999999998887654 56765568
Q ss_pred CCChhhhhhhhccccCCCCCHHHHHHHHHh-CC
Q 014455 205 AGTGNGMIKSLLDLVGEPCKASNAILAVIR-GH 236 (424)
Q Consensus 205 ~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~-g~ 236 (424)
+|+-.-++. + .|.+..+++..+++ |.
T Consensus 74 ~G~lGFL~~-~-----~~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 74 RGNLGFLTD-I-----DPKNAYEQLEACLERGE 100 (272)
T ss_pred CCCCccccc-C-----CHHHHHHHHHHHHhcCC
Confidence 887443332 2 23455567777777 64
No 46
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=95.53 E-value=0.078 Score=50.70 Aligned_cols=100 Identities=19% Similarity=0.331 Sum_probs=62.2
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE----cCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 101 ~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+.+... ..++++|+.-+.. .+...++++..|+.+|+++.+.. .....++.++..++...++|.||.+||
T Consensus 12 ~~l~~~-~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGg- 84 (250)
T PF13685_consen 12 EILSEL-GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGG- 84 (250)
T ss_dssp HHHGGG-T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEES-
T ss_pred HHHHhc-CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCC-
Confidence 344443 3478999987653 23345789999999999887543 333344556666664568999999998
Q ss_pred chHHHHHHHhhcCcCcccccCCcEEEecCCCh-hhhhh
Q 014455 177 GILVEVVNGLLEREDWNDAIKVPLGVVPAGTG-NGMIK 213 (424)
Q Consensus 177 GTl~evvngL~~~~~~~~~~~~plgiiP~GTg-N~~Ar 213 (424)
||++++.--...+ .++|+-.+|.=-. |+|+.
T Consensus 85 G~i~D~~K~~A~~------~~~p~isVPTa~S~DG~aS 116 (250)
T PF13685_consen 85 GTIIDIAKYAAFE------LGIPFISVPTAASHDGFAS 116 (250)
T ss_dssp HHHHHHHHHHHHH------HT--EEEEES--SSGGGTS
T ss_pred cHHHHHHHHHHHh------cCCCEEEeccccccccccC
Confidence 9999999887654 3789999997544 44443
No 47
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=95.33 E-value=0.061 Score=54.31 Aligned_cols=68 Identities=26% Similarity=0.574 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHh----hhhcCCCcEEEEEEcCCCCCc--chhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 90 DSKRLWCEKLRDF----IDSFGRPKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 90 ~~~~~w~~~~~~~----~~~~~r~~~~~vivNP~sG~~--~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
...+.|++.+..+ |.....|+|+.|++.|--|.+ .+.+.|.+.|+|+|.+++++|+++...+.|+.+.
T Consensus 44 ri~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr~ 117 (382)
T PF11711_consen 44 RIRQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIRA 117 (382)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHHH
Confidence 3567899888654 444578999999999988876 6788999999999999999999999999998753
No 48
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=95.22 E-value=0.18 Score=51.36 Aligned_cols=101 Identities=19% Similarity=0.297 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC---ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++|+..+.+-+..+ .+ +++...|+++++++.++. .+ ......++++.+...+.|.||++|| |++.++.-
T Consensus 26 ~kr~livtd~~~~~~~g--~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK 101 (383)
T cd08186 26 ISKVLLVTGKSAYKKSG--AW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAK 101 (383)
T ss_pred CCEEEEEcCccHHhhcC--hH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHH
Confidence 37899998776643222 24 578899999999887653 11 2234555666665568999999999 56665554
Q ss_pred Hh---hcCcCc----------ccccCCcEEEecC--CChhhhhh
Q 014455 185 GL---LEREDW----------NDAIKVPLGVVPA--GTGNGMIK 213 (424)
Q Consensus 185 gL---~~~~~~----------~~~~~~plgiiP~--GTgN~~Ar 213 (424)
.+ +..+.. .....+|+..||. |||--..+
T Consensus 102 ~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 102 SAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 43 222110 0112579999997 77655443
No 49
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=95.14 E-value=0.21 Score=50.32 Aligned_cols=100 Identities=22% Similarity=0.357 Sum_probs=62.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+.-+.+-+..+ .+ +++...|+.+++++.++. ...+ ....++++.+...+.|.||++|| |++.++.-.
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998776643322 23 578899999999887652 2222 33455666655578999999998 666666654
Q ss_pred hh---cCcCc--------ccccCCcEEEecC--CChhhhhh
Q 014455 186 LL---EREDW--------NDAIKVPLGVVPA--GTGNGMIK 213 (424)
Q Consensus 186 L~---~~~~~--------~~~~~~plgiiP~--GTgN~~Ar 213 (424)
+. ..+.. .....+|+..||. |||--...
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 32 11100 0112589999997 56554444
No 50
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=95.11 E-value=0.14 Score=48.90 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=40.1
Q ss_pred CCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
+.+|.||++|||||+-.+++-+... .+|+--|.+|+-.-++... .+.+..+++..+..+..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~G~lGFL~~~~-----~~~e~~~~l~~~~~~~~ 84 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNRGSVGFLMNEY-----SEDDLLERIAAAEPTVL 84 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeCCCCCcccCCC-----CHHHHHHHHHHhhcCcE
Confidence 4689999999999999999987664 5777667888643333211 12234455555555543
No 51
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=94.89 E-value=0.3 Score=49.59 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+..-+ . ..+ +++...|+.+++++.++. ... .....+.++.+...++|.||.+|| |++.++.-.
T Consensus 24 ~r~livt~~~~~~--~-g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVK--L-GLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhh--c-chH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6899998765542 1 134 579999999999887652 222 233455566655568999999998 666665544
Q ss_pred hh---cCcC---------cccccCCcEEEecC
Q 014455 186 LL---ERED---------WNDAIKVPLGVVPA 205 (424)
Q Consensus 186 L~---~~~~---------~~~~~~~plgiiP~ 205 (424)
+. ..+. ......+|+..||.
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 99 IAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 32 2110 00113579999997
No 52
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=94.81 E-value=0.28 Score=49.79 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+..-+ ...+ ++++..|+.+++++.++. ...+ ....++++.+...++|.||.+|| |++.++.-.
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 6788887765432 1234 589999999999887652 1122 23445555555568999999998 666665544
Q ss_pred hh---cCcC---------cccccCCcEEEecC--CChhhh
Q 014455 186 LL---ERED---------WNDAIKVPLGVVPA--GTGNGM 211 (424)
Q Consensus 186 L~---~~~~---------~~~~~~~plgiiP~--GTgN~~ 211 (424)
+. ..+. ......+|+..||. |||--.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~ 143 (377)
T cd08176 104 IGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEV 143 (377)
T ss_pred HHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhcc
Confidence 32 1110 00113589999997 665444
No 53
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=94.66 E-value=0.35 Score=48.24 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=59.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-----ChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-----~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
.+|++||..+..-+ .+.+++...|+++++++.++..+ ......++++.+.. +.|.||++|| |++.++.
T Consensus 24 ~~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~D~a 96 (332)
T cd08549 24 NSKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTIIDLV 96 (332)
T ss_pred CCcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHHHHH
Confidence 46899998876632 23367889999998877664322 23444566666655 8999999998 7888887
Q ss_pred HHhhcCcCcccccCCcEEEecCC
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~G 206 (424)
-.+.-. ..+|+-.||.=
T Consensus 97 K~iA~~------~gip~I~VPTT 113 (332)
T cd08549 97 KFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHH------cCCCEEEeCCC
Confidence 766422 26899999974
No 54
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=94.66 E-value=0.033 Score=54.11 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=66.4
Q ss_pred hhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe--
Q 014455 126 SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV-- 203 (424)
Q Consensus 126 ~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii-- 203 (424)
.+.+.+.+...|..+|++..++.-. .+.+.+ ...|.||-+|||||+--...-+... ..+-||+=
T Consensus 73 hkn~~~~~~~~l~k~giesklv~R~------~lsq~i--~waD~VisvGGDGTfL~Aasrv~~~------~~PViGvNtD 138 (395)
T KOG4180|consen 73 HKNAIKFCQEELSKAGIESKLVSRN------DLSQPI--RWADMVISVGGDGTFLLAASRVIDD------SKPVIGVNTD 138 (395)
T ss_pred HHHHHHHHHHHHhhCCcceeeeehh------hccCcC--chhhEEEEecCccceeehhhhhhcc------CCceeeecCC
Confidence 3446678899999999986654322 233442 4689999999999998877766654 25556664
Q ss_pred cCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeee
Q 014455 204 PAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240 (424)
Q Consensus 204 P~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~l 240 (424)
|.||--.++-.- ..|.++..|+..+..|.-+.+
T Consensus 139 P~~Seg~lcL~~----~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 139 PTGSEGHLCLPD----KYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred CCcCcceEeccc----cCCCCcHHHHHHHHhccHHHh
Confidence 667665555443 456678888888888865543
No 55
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=94.63 E-value=0.24 Score=48.30 Aligned_cols=111 Identities=24% Similarity=0.273 Sum_probs=65.9
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH--HHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~--l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
++.++.+|..-. +.... +.+...+...+.+..+.. +-..+... -..+.+.+.+|.|++.|||||+-.+++-+..
T Consensus 2 ~~~i~~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~ 77 (281)
T COG0061 2 KVGIVGRPDKPE--ALKIA-KRLYEFLKFKGVTVEVDQ-ELAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77 (281)
T ss_pred eEEEEecCCcHH--HHHHH-HHHHHHHHhcCceEEEec-hhhhhcccccccccccccCceEEEEeCCcHHHHHHHHHhcc
Confidence 455666654433 43322 466666766665544322 11111111 1122233679999999999999999998876
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
. .+|+-=|-.|+ =+|-..+ .+.+.++++..+.+|..+
T Consensus 78 ~-------~~pilgin~G~-lGFLt~~-----~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 78 L-------DIPVLGINLGH-LGFLTDF-----EPDELEKALDALLEGEYR 114 (281)
T ss_pred C-------CCCEEEEeCCC-ccccccc-----CHHHHHHHHHHHhcCceE
Confidence 5 46776666762 2344333 145677888888887554
No 56
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=94.55 E-value=0.43 Score=48.59 Aligned_cols=97 Identities=20% Similarity=0.307 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+..-+. ..+ +++...|+++++++.++. ...+ ....+.++.+...++|.||.+|| |++-++.-.
T Consensus 31 ~~~lvvtd~~~~~~---g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKC---GVV-AKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhC---cch-HHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 68888887643221 134 689999999999887652 2222 33445555555568999999998 566665543
Q ss_pred ---hhcCcC----c-------ccccCCcEEEecC--CChhhh
Q 014455 186 ---LLERED----W-------NDAIKVPLGVVPA--GTGNGM 211 (424)
Q Consensus 186 ---L~~~~~----~-------~~~~~~plgiiP~--GTgN~~ 211 (424)
+...++ + .....+|+..||. |||--.
T Consensus 106 ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~ 147 (382)
T PRK10624 106 IGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEV 147 (382)
T ss_pred HHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhh
Confidence 222211 0 0112589999997 555433
No 57
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=94.36 E-value=0.55 Score=47.34 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-c-----CChhhHHHHHHHhccCCCc---eEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-----TQQLHAKEIVKVLDLSKYD---GIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T-----~~~~~a~~l~~~~~~~~~d---~vV~vGGDGTl~ 180 (424)
++++|+..+.-. +.+.+.+...|+.+++++.++. . ..-....++++.+...+.| .||++|| |++.
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 689999886542 2244689999999988765432 1 2223455555555444555 8998887 8888
Q ss_pred HHHHHhhcCcCcccccCCcEEEecC--CChhh
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPA--GTGNG 210 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~--GTgN~ 210 (424)
++.-.+...- ...+|+..||. |++.+
T Consensus 98 D~ak~~A~~~----~rgip~I~IPTTlla~~d 125 (355)
T cd08197 98 NIAGLLAALL----FRGIRLVHIPTTLLAQSD 125 (355)
T ss_pred HHHHHHHHHh----ccCCCEEEecCccccccc
Confidence 8776553210 02689999998 44443
No 58
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=94.28 E-value=0.38 Score=48.94 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+.-+.+....+ .+ +++...|+.+|+++.++. ...+ ....+.++.+...++|.||.+|| |++.++.-.
T Consensus 29 ~r~livt~~~~~~~~~--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKNG--LY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhcC--cH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 7899887766654322 24 578899999998876542 1122 33444555554568999999998 666666554
Q ss_pred hhc---CcC---------cccccCCcEEEecC--CChh
Q 014455 186 LLE---RED---------WNDAIKVPLGVVPA--GTGN 209 (424)
Q Consensus 186 L~~---~~~---------~~~~~~~plgiiP~--GTgN 209 (424)
+.- .+. ......+|+-.||. |||-
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGs 142 (382)
T cd08187 105 IAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGS 142 (382)
T ss_pred HHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhh
Confidence 321 100 00013579999996 5553
No 59
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=94.13 E-value=0.45 Score=47.69 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCC---CceEEEEcCCc
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSK---YDGIVCVSGDG 177 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~---~d~vV~vGGDG 177 (424)
...+|++||..+..-+ .+.+++...|+.+|+++.++. ...-....++++.+...+ .|.||++|| |
T Consensus 22 ~~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-G 95 (345)
T cd08195 22 PKGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-G 95 (345)
T ss_pred cCCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-h
Confidence 3457899999876643 244689999999988776433 123345555555554434 489999987 7
Q ss_pred hHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 178 Tl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
++.++.-.+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 7777776553110 02689999996
No 60
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=94.12 E-value=0.55 Score=47.75 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+.+-+.. ..+ +++...|+.+++++.++. .. .-....+.++.+...++|.||.+|| |++-++.-.
T Consensus 26 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhc--cHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 789999987763222 234 588999999999887652 21 2233445555555568999999998 555555444
Q ss_pred h---hcCcC--------------cccccCCcEEEecC--CChhhhh
Q 014455 186 L---LERED--------------WNDAIKVPLGVVPA--GTGNGMI 212 (424)
Q Consensus 186 L---~~~~~--------------~~~~~~~plgiiP~--GTgN~~A 212 (424)
+ +..+. ......+|+..||. |||--..
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t 147 (380)
T cd08185 102 IAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEAD 147 (380)
T ss_pred HHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccC
Confidence 3 21110 00112589999996 5554333
No 61
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.04 E-value=0.33 Score=48.72 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+.+-. . +.+++...|+.+++++.++. .. ......++++.+...++|.||.+|| |++.++.-.
T Consensus 23 ~r~liv~d~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTALA----A-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHHH----H-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHH
Confidence 7889887765432 1 23688999999998776443 11 1223344555444568999999998 788888777
Q ss_pred hhcCcCcccccCCcEEEecC
Q 014455 186 LLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~ 205 (424)
+... ..+|+..||.
T Consensus 97 ia~~------~~~p~i~VPT 110 (345)
T cd08171 97 LADK------LGKPVFTFPT 110 (345)
T ss_pred HHHH------cCCCEEEecC
Confidence 6443 2579999997
No 62
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.91 E-value=0.69 Score=46.52 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=60.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.++++||..+...+ .+.+++...|+..+ ++.++....+ ....++++.+...+.|.||++|| |++.++.-.+
T Consensus 34 ~~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 34 TGRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CCeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHH
Confidence 36899998887643 23467888898877 6655543333 33456666665567899999998 8888888776
Q ss_pred hcCcCcccccCCcEEEecCCCh
Q 014455 187 LEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTg 208 (424)
.-. ..+|+-.||.=.+
T Consensus 107 A~~------rgip~I~IPTT~~ 122 (350)
T PRK00843 107 AYR------LGIPFISVPTAAS 122 (350)
T ss_pred HHh------cCCCEEEeCCCcc
Confidence 532 2689999997443
No 63
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=93.79 E-value=0.41 Score=48.11 Aligned_cols=84 Identities=17% Similarity=0.178 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-c-C-ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T-~-~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|.+|+..+.+-+ ..+ +++...|+.+++.+.+.. . + ......++++.+...++|.||++|| |++.++.-.+
T Consensus 23 ~~~liv~~~~~~~----~~~-~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~i 96 (349)
T cd08550 23 SKVAVVGGKTVLK----KSR-PRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAV 96 (349)
T ss_pred CeEEEEEChHHHH----HHH-HHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHH
Confidence 6788887766543 223 688999999887654322 2 2 2234455555555568999999998 7888888777
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
... ..+|+..||.
T Consensus 97 a~~------~~~p~i~VPT 109 (349)
T cd08550 97 ADR------LDKPIVIVPT 109 (349)
T ss_pred HHH------cCCCEEEeCC
Confidence 533 2579999997
No 64
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.65 E-value=0.63 Score=46.53 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+|++|+..+...+ .+.+++...|+.++ ++.++.... ...+.++++.+...+.|.||++|| |++.++.-.+.
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 6889998876533 23468899999888 665554333 234455666665568999999998 88888888775
Q ss_pred cCcCcccccCCcEEEecCCCh
Q 014455 188 EREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTg 208 (424)
.. ..+|+..||.=.+
T Consensus 99 ~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 99 YK------LGIPFISVPTAAS 113 (339)
T ss_pred Hh------cCCCEEEecCccc
Confidence 32 2689999997544
No 65
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.63 E-value=0.79 Score=46.60 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+..-+. ..+ +++...|+++++++.++. ...+ ....+.++.+...++|.||++|| |.+-++.-.
T Consensus 30 ~r~lvvt~~~~~~~---g~~-~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIKF---GVA-DKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhhc---cch-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 68888887644221 123 688999999999887652 2222 34445555555568999999999 555555533
Q ss_pred h---hcCcC-----------cccccCCcEEEecC--CCh
Q 014455 186 L---LERED-----------WNDAIKVPLGVVPA--GTG 208 (424)
Q Consensus 186 L---~~~~~-----------~~~~~~~plgiiP~--GTg 208 (424)
+ ...+. ......+|+..||. |||
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG 143 (379)
T TIGR02638 105 IGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTA 143 (379)
T ss_pred HHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchh
Confidence 2 22210 00113579999997 444
No 66
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=93.34 E-value=0.95 Score=45.62 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-c-----CChhhHHHHHHHhcc---CCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-----TQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T-----~~~~~a~~l~~~~~~---~~~d~vV~vGGDGTl 179 (424)
.++++|+..+...+ .+.+++.+.|+.+++++.++. . ..-....++++.+.. .+.|.||++|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 46899998766532 244689999999998877532 2 122334455544433 34599999997 788
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecC
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.+++..+.... ...+|+..||.
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPT 126 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCc
Confidence 88877664210 02689999997
No 67
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=93.33 E-value=0.7 Score=46.59 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-E-----cCChhhHHHHHHHhccCCC----ceEEEEcCCc
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-E-----TTQQLHAKEIVKVLDLSKY----DGIVCVSGDG 177 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~-----T~~~~~a~~l~~~~~~~~~----d~vV~vGGDG 177 (424)
.+++++||..+..-+ .+.+.+...|+.+++++..+ . ...-....++++.+...+. |.||++|| |
T Consensus 25 ~~~~~lvVtd~~v~~-----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G 98 (354)
T cd08199 25 GSGRRFVVVDQNVDK-----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-G 98 (354)
T ss_pred CCCeEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-c
Confidence 468899999776532 23368899999898887743 2 2233445555555443344 99999987 7
Q ss_pred hHHHHHHHhh---cCcCcccccCCcEEEecC
Q 014455 178 ILVEVVNGLL---EREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 178 Tl~evvngL~---~~~~~~~~~~~plgiiP~ 205 (424)
++..+.-.+. .+ .+|+-.||.
T Consensus 99 ~v~D~ak~~A~~~~r-------g~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLYRR-------GTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEEcC
Confidence 8888777664 33 678999997
No 68
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=93.10 E-value=0.84 Score=46.51 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=56.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+...+ ...+ +++...|+++++++.++.-. ......+.++.+...++|.||.+|| |++.++.-.
T Consensus 23 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 97 (386)
T cd08191 23 SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG-GSCIDLAKI 97 (386)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998765543 1234 57899999999988765311 1222334444444568999999998 666666554
Q ss_pred h---hcCcC--c-------ccccCCcEEEecCC
Q 014455 186 L---LERED--W-------NDAIKVPLGVVPAG 206 (424)
Q Consensus 186 L---~~~~~--~-------~~~~~~plgiiP~G 206 (424)
+ +.++. + .....+|+..||.=
T Consensus 98 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 98 AGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred HHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 4 22211 0 01125799999963
No 69
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=93.03 E-value=1.2 Score=45.12 Aligned_cols=95 Identities=21% Similarity=0.308 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+..-+ .. +.+++...|+++++++.++. ... ..+..+.++.+...+.|.||++|| |++-++.-.
T Consensus 29 ~~~livt~~~~~~---~~-~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ 103 (377)
T cd08188 29 KKVLLVSDPGVIK---AG-WVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKG 103 (377)
T ss_pred CeEEEEeCcchhh---Cc-cHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887654321 11 33578999999998887652 222 233445555555568999999998 555555532
Q ss_pred ---hhcCcC---------cccccCCcEEEecC--CChh
Q 014455 186 ---LLERED---------WNDAIKVPLGVVPA--GTGN 209 (424)
Q Consensus 186 ---L~~~~~---------~~~~~~~plgiiP~--GTgN 209 (424)
+...+. ......+|+..||. |||-
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgS 141 (377)
T cd08188 104 IGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGA 141 (377)
T ss_pred HHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCcccc
Confidence 222110 00112478999997 5553
No 70
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=92.86 E-value=1.1 Score=45.70 Aligned_cols=99 Identities=18% Similarity=0.277 Sum_probs=57.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
++++|+.-+.. +....+ +++...|+++++.+.++.-. ......+.++.+...+.|.||.+||=-.+ ++.-.
T Consensus 32 ~~~livt~~~~---~~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~i-D~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPH-DCAKG 106 (383)
T ss_pred CEEEEEcCcch---hhCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHH-HHHHH
Confidence 67887765422 112235 58999999999987654321 22344555555555689999999995443 33332
Q ss_pred ---hhcCcC---------cccccCCcEEEecC--CChhhhhh
Q 014455 186 ---LLERED---------WNDAIKVPLGVVPA--GTGNGMIK 213 (424)
Q Consensus 186 ---L~~~~~---------~~~~~~~plgiiP~--GTgN~~Ar 213 (424)
++..+. ......+|+..||. |||--..+
T Consensus 107 ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~ 148 (383)
T PRK09860 107 IALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTR 148 (383)
T ss_pred HHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCc
Confidence 222110 00113579999997 66654443
No 71
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=92.85 E-value=0.75 Score=46.50 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-Ec--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++||..+..-+ . +.+++...|+.+++++.+. .. .......++++.+...+.|.||++|| |++.++.-.+
T Consensus 30 ~~~livtd~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVLG----I-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHHH----H-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 7889888655432 2 3468999999988876322 11 11223445555554568999999999 7788877776
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
.-. ..+|+..||.
T Consensus 104 A~~------~~~p~i~IPT 116 (366)
T PRK09423 104 ADY------LGVPVVIVPT 116 (366)
T ss_pred HHH------cCCCEEEeCC
Confidence 432 2689999997
No 72
>PRK10586 putative oxidoreductase; Provisional
Probab=92.57 E-value=1.3 Score=44.70 Aligned_cols=98 Identities=13% Similarity=0.186 Sum_probs=62.0
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cCChhhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 101 ~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
+.+...+. +|.+||.-+.+ .+.....+.+.|+++++.+..+. .....++.++++... .+.|.||.+|| |++
T Consensus 27 ~~~~~~g~-~~~lvv~g~~~-----~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGG-Gs~ 98 (362)
T PRK10586 27 DFFTDEQL-SRAVWIYGERA-----IAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG-DDRQVVIGVGG-GAL 98 (362)
T ss_pred HHHHhcCC-CeEEEEEChHH-----HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc-cCCCEEEEecC-cHH
Confidence 33444433 57888765433 22233467788999988775443 222344556655553 57899999997 777
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
.++.-.+... ..+|+..||.=.+|+-.
T Consensus 99 iD~aK~~a~~------~~~p~i~vPT~a~t~s~ 125 (362)
T PRK10586 99 LDTAKALARR------LGLPFVAIPTIAATCAA 125 (362)
T ss_pred HHHHHHHHhh------cCCCEEEEeCCcccccc
Confidence 7888777654 26899999986555443
No 73
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=92.49 E-value=0.91 Score=46.46 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--c--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||.-+...+ .. +.+++...|+.+|+++.++. . .......++++.+...++|.||++|| |++.++.-
T Consensus 21 ~~k~liVtd~~~~~---~g-~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 21 KKRAFIVTDRFMVK---LG-YVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CCeEEEEcChhHHh---Cc-cHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 37888887543211 11 33689999999998876542 1 22234556666655578999999999 45555444
Q ss_pred H
Q 014455 185 G 185 (424)
Q Consensus 185 g 185 (424)
.
T Consensus 96 ~ 96 (398)
T cd08178 96 I 96 (398)
T ss_pred H
Confidence 3
No 74
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.30 E-value=0.76 Score=46.08 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=58.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+|++||..+..- .. +.++++..|+..++.+.++. ........++++.+...++|.||++|| |++.++.-.+..
T Consensus 24 ~~~liv~d~~~~----~~-~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~ 97 (347)
T cd08172 24 KRPLIVTGPRSW----AA-AKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVAD 97 (347)
T ss_pred CeEEEEECHHHH----HH-HHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 789999987762 22 34678888876666554332 133445556666665568999999998 888888877754
Q ss_pred CcCcccccCCcEEEecCC
Q 014455 189 REDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~G 206 (424)
. ..+|+..||.=
T Consensus 98 ~------~~~p~i~VPTT 109 (347)
T cd08172 98 R------LGVPVITVPTL 109 (347)
T ss_pred H------hCCCEEEecCc
Confidence 3 25799999973
No 75
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=92.13 E-value=1.3 Score=44.07 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCChhhHHHHHHHhccC-CCceEEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~~~~a~~l~~~~~~~-~~d~vV~vGGDGTl~evvngL~ 187 (424)
+|++||..+.. + +++...|+.+++ .+..+.........++.+.+... +.|.||++|| |++.++.-.+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 68999987765 3 467777877776 44443322223344444444333 5899999998 88888888775
Q ss_pred cCcCcccccCCcEEEecCCChh
Q 014455 188 EREDWNDAIKVPLGVVPAGTGN 209 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN 209 (424)
.. ..+|+..||.=.++
T Consensus 96 ~~------~~~p~i~vPTt~~t 111 (331)
T cd08174 96 FL------RGIPLSVPTTNLND 111 (331)
T ss_pred hh------cCCCEEEecCcccc
Confidence 53 26899999975544
No 76
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=92.10 E-value=1.6 Score=43.68 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-Ec-----CChhhHHHHHHHhcc---CCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ET-----TQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T-----~~~~~a~~l~~~~~~---~~~d~vV~vGGDGTl 179 (424)
.+|++|+.++..-+ .+.+++.+.|+.+|+++.++ .. ..-....++++.+.. ++.|.||++|| |++
T Consensus 20 ~~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD-----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 47899998765532 13468999999998876432 21 122344555554433 34589999998 777
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecC
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.++.-.+.... ...+|+..||.
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecC
Confidence 77776653110 02689999997
No 77
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=91.91 E-value=1 Score=45.21 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++|+.-+.+.+ . +.+++...|+.+++++.+. ... ...+..+.++.+...+.|.||++|| |++-++.-.+
T Consensus 23 ~r~livt~~~~~~----~-~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVLD----L-VGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHHH----H-HHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 7888887443322 2 3368999999998876432 222 2234455555555568999999999 6777777666
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
.-. ..+|+..||.
T Consensus 97 a~~------~~~P~iaIPT 109 (351)
T cd08170 97 ADY------LGAPVVIVPT 109 (351)
T ss_pred HHH------cCCCEEEeCC
Confidence 432 2589999997
No 78
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=91.70 E-value=1.6 Score=44.09 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
++++|+..+.+-+ . ..+ +.+...|++.++++.++. +. ......++++.+...+.|.||++|| |++.++.-.
T Consensus 24 ~~~lvv~~~~~~~-~--~~~-~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVK-T--GVL-DKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhh-C--ccH-HHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6889998876644 1 123 578899998888876552 22 2334556666665568999999999 555555443
Q ss_pred h---hcCcC---------cccccCCcEEEecCCC
Q 014455 186 L---LERED---------WNDAIKVPLGVVPAGT 207 (424)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiiP~GT 207 (424)
+ +..++ ......+|+..||.=.
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 3 22110 0011258999999843
No 79
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=91.59 E-value=0.31 Score=48.82 Aligned_cols=58 Identities=22% Similarity=0.464 Sum_probs=37.0
Q ss_pred CCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCC-CHHHHHHHHHhCC
Q 014455 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGH 236 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~-~~~~a~~~i~~g~ 236 (424)
+.+|.||++|||||+--+.+ |+++. -+|+--+-.||- +|-.. .|. +..+.+..|+.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq~~------VPPV~sFslGsl-GFLtp------f~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQRS------VPPVLSFSLGSL-GFLTP------FPFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhcCC------CCCeEEeecCCc-ccccc------ccHHHHHHHHHHHhcCc
Confidence 47899999999999876655 44441 467777777742 12111 121 3456777788776
No 80
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=91.15 E-value=2.3 Score=43.09 Aligned_cols=95 Identities=23% Similarity=0.342 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE----cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+.-+.-.+ ...+ +++...|+++++++.++. ........+.++.+...++|.||++|| |++.++.-.
T Consensus 27 ~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGILK---AGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6788876543211 1234 578899999998876542 122234456666665578999999998 666666544
Q ss_pred h---hcCcC---------cccccCCcEEEecCCChh
Q 014455 186 L---LERED---------WNDAIKVPLGVVPAGTGN 209 (424)
Q Consensus 186 L---~~~~~---------~~~~~~~plgiiP~GTgN 209 (424)
+ +..+. ......+|+..||.=.|+
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt 137 (376)
T cd08193 102 VAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGT 137 (376)
T ss_pred HHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcc
Confidence 3 21110 001125799999974433
No 81
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=90.92 E-value=2.5 Score=42.73 Aligned_cols=72 Identities=19% Similarity=0.303 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+..-+ ...+ +++...|+++|+++.++. ...+ ....+.++.+...+.|.||.+|| |++.++.-.
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887765421 1134 578999999999886652 1222 23445555555568999999998 666666544
Q ss_pred h
Q 014455 186 L 186 (424)
Q Consensus 186 L 186 (424)
+
T Consensus 100 i 100 (370)
T cd08192 100 V 100 (370)
T ss_pred H
Confidence 3
No 82
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=90.84 E-value=1.5 Score=44.86 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=70.0
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc----c--------
Q 014455 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----L-------- 164 (424)
Q Consensus 97 ~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~----~-------- 164 (424)
+.|...|.+...-..-.+++|+.--.|+ .+..+|+..... ++.|-...+.+.+...+. .
T Consensus 3 dQL~~il~sd~~lPe~i~Lvn~sd~qgq-------~l~~~l~~~~~p--vv~t~s~advqa~fs~iv~rIQk~Cn~ns~~ 73 (414)
T PF10254_consen 3 DQLNHILISDDQLPENIILVNTSDWQGQ-------FLSDLLQEHMLP--VVCTCSTADVQAAFSAIVSRIQKFCNCNSSP 73 (414)
T ss_pred hhhhhhhccCCCCCceEEEEecCccchh-------HHHHHHhhcCCC--eEecCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4555555443333446678887654332 356677766443 566777777665443332 1
Q ss_pred CCCceEEEEcCCchHHHHHHHhhcC-----cCcccccCCcEEEecCCChhhhhhhhc
Q 014455 165 SKYDGIVCVSGDGILVEVVNGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~evvngL~~~-----~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
...--|+++|||--++.|+...++. ++|. .-+.+-+||.|+ |.+|+.|+
T Consensus 74 p~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl--~~~rFlvIPlGs-~~varyLg 127 (414)
T PF10254_consen 74 PPPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWL--NYLRFLVIPLGS-HPVARYLG 127 (414)
T ss_pred CCceEEEEEccHHHHHHHHHHHHHHhccCCcccc--cceeEEEecCCC-CHHHHHHh
Confidence 1344699999999999998876542 3442 356789999999 99999985
No 83
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=90.68 E-value=3.2 Score=42.77 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=43.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
+|++|+.-+..-+ . ..+ +++...|+.+|+++.++. ...+ ....+.++.+...+.|.||.+||= ++-++
T Consensus 24 ~~vlivt~~~~~~-~--g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-SviD~ 95 (414)
T cd08190 24 RRVCLVTDPNLAQ-L--PPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGG-SVIDT 95 (414)
T ss_pred CeEEEEECcchhh-c--chH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-cHHHH
Confidence 6888888765422 1 123 578889999999887652 1122 234455555555689999999994 44443
No 84
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=90.47 E-value=3.6 Score=41.51 Aligned_cols=90 Identities=18% Similarity=0.281 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+.+- +.+.+...|+++++++.++. ... -....++++.+...++|.||++|| |++.++.-.
T Consensus 24 ~~~livtd~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ 95 (367)
T cd08182 24 KRVLLVTGPRSA-------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKA 95 (367)
T ss_pred CeEEEEeCchHH-------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 688888665543 22467788888888776542 122 133445555555568999999998 666665544
Q ss_pred h---hcCcC-------------cccccCCcEEEecCCC
Q 014455 186 L---LERED-------------WNDAIKVPLGVVPAGT 207 (424)
Q Consensus 186 L---~~~~~-------------~~~~~~~plgiiP~GT 207 (424)
+ +..+. ......+|+..||.=.
T Consensus 96 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 133 (367)
T cd08182 96 LAALLGAPREALEDLRIRNKERENRERALPLIAIPTTA 133 (367)
T ss_pred HHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCC
Confidence 3 21110 0011358999999743
No 85
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=90.42 E-value=2.7 Score=41.69 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=59.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--c--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..+..-+ . +.+++...|+++ +++.++. . ..-.+..++++.+...+.|.||++|| |++.++.-
T Consensus 23 ~~~~liv~~~~~~~----~-~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK 95 (332)
T cd07766 23 FDRALVVSDEGVVK----G-VGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK 95 (332)
T ss_pred CCeEEEEeCCchhh----h-HHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH
Confidence 36899998766643 1 335788889887 7665543 1 22344556666665568999999997 77777776
Q ss_pred HhhcCcCcccccCCcEEEecCCChhh
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNG 210 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~ 210 (424)
.+...-. ..+|+..||.=.+.+
T Consensus 96 ~ia~~~~----~~~p~i~iPTt~~tg 117 (332)
T cd07766 96 AVAALLN----RGLPIIIVPTTAATG 117 (332)
T ss_pred HHHHHhc----CCCCEEEEeCCCchh
Confidence 6533210 268999999744443
No 86
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=90.34 E-value=3 Score=41.82 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
+|++||.-+..-+ . ..+++...|+.+++++.++.- .......++++.+.. +.|.||++|| |++-++.
T Consensus 24 ~~~livtd~~~~~----~-~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~a 96 (348)
T cd08175 24 KKALIVADENTYA----A-AGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDIT 96 (348)
T ss_pred CcEEEEECCcHHH----H-HHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHH
Confidence 6788887654421 1 236889999999987765431 222344556666544 8999999999 7888888
Q ss_pred HHhhcCcCcccccCCcEEEecCCC
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GT 207 (424)
-.+... ..+|+-.||.=+
T Consensus 97 K~vA~~------~~~p~i~IPTTa 114 (348)
T cd08175 97 KYVSYK------TGIPYISVPTAP 114 (348)
T ss_pred HHHHHh------cCCCEEEecCcc
Confidence 777543 268999999743
No 87
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=90.18 E-value=2 Score=43.63 Aligned_cols=98 Identities=19% Similarity=0.285 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+.+-+..+ .+ +++...|+.+++++.++.- ..+ ....+.++.+...++|.||++||= ++-++.-.
T Consensus 24 ~r~livt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG-SviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKFG--FL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGG-SPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhCC--hH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-cHHHHHHH
Confidence 6888887655433222 23 5889999999998876532 122 334555555555689999999994 44444433
Q ss_pred h---hcCcC--cc----------cccCCcEEEecC--CChhhh
Q 014455 186 L---LERED--WN----------DAIKVPLGVVPA--GTGNGM 211 (424)
Q Consensus 186 L---~~~~~--~~----------~~~~~plgiiP~--GTgN~~ 211 (424)
+ +..+. .. ....+|+..||. |||--.
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~ 142 (375)
T cd08179 100 MWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEV 142 (375)
T ss_pred HHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhh
Confidence 2 22211 00 012479999997 555433
No 88
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=90.12 E-value=4.8 Score=40.89 Aligned_cols=123 Identities=21% Similarity=0.234 Sum_probs=73.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh----hhH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----LHA 155 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~----~~a 155 (424)
.++.|...+.+....++.. -.-+|.+|+--|.--+ . . +.+++...|+.+++++.++.--.+ ...
T Consensus 8 ~~i~fG~g~l~~l~~~~~~--------~g~~r~liVTd~~~~~--~-g-~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v 75 (377)
T COG1454 8 TEILFGRGSLKELGEEVKR--------LGAKRALIVTDRGLAK--L-G-LLDKVLDSLDAAGIEYEVFDEVEPEPTIETV 75 (377)
T ss_pred ceEEecCChHHHHHHHHHh--------cCCCceEEEECCcccc--c-h-hHHHHHHHHHhcCCeEEEecCCCCCCCHHHH
Confidence 3455555555555444332 1237889888876322 1 1 336899999999988877642222 233
Q ss_pred HHHHHHhccCCCceEEEEcCCchHHHHHHHh---hcCcCc---------ccccCCcEEEecC--CChhhhhhhh
Q 014455 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGL---LEREDW---------NDAIKVPLGVVPA--GTGNGMIKSL 215 (424)
Q Consensus 156 ~~l~~~~~~~~~d~vV~vGGDGTl~evvngL---~~~~~~---------~~~~~~plgiiP~--GTgN~~Ar~l 215 (424)
.+.++.+...++|.||++|| |+.-++..++ ...++. ....+.||-.||. |||--..+.-
T Consensus 76 ~~~~~~~~~~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~a 148 (377)
T COG1454 76 EAGAEVAREFGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFA 148 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeE
Confidence 44445555678999999999 5555555443 332210 0122478999995 7777666654
No 89
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=89.99 E-value=2 Score=42.80 Aligned_cols=93 Identities=22% Similarity=0.320 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..+...+. ..+ +++...|+.+ +++.++. ... .....++++.+...++|.||.+|| |++-++.-
T Consensus 22 ~~~~lvv~~~~~~~~---g~~-~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 22 NKRVLIVTDPFMVKS---GML-DKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred CCeEEEEeCchhhhC---ccH-HHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHH
Confidence 378999987644321 123 5788889877 6665442 222 233345555555568999999999 55555555
Q ss_pred Hh---hcCcCcccccCCcEEEecC--CChh
Q 014455 185 GL---LEREDWNDAIKVPLGVVPA--GTGN 209 (424)
Q Consensus 185 gL---~~~~~~~~~~~~plgiiP~--GTgN 209 (424)
.+ ..... ....+|+..||. |||-
T Consensus 96 a~a~~~~~~~--~~~~~p~i~VPTtagtgs 123 (332)
T cd08180 96 AIIYFAKKLG--KKKKPLFIAIPTTSGTGS 123 (332)
T ss_pred HHHHHHhCCC--CCCCCCEEEeCCCCcchH
Confidence 43 22210 112589999996 5553
No 90
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=89.28 E-value=4.4 Score=41.50 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=57.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHH--H
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEV--V 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev--v 183 (424)
++++|+.-+..- + ...+ +++...|+++|+++.++. +..+ ....+.++.+...++|.||.+||=-.+--. +
T Consensus 50 ~~~lvv~~~~~~--~-~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKai 125 (395)
T PRK15454 50 KHLFVMADSFLH--Q-AGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAV 125 (395)
T ss_pred CEEEEEcCcchh--h-CccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHH
Confidence 567766543321 1 2234 579999999999887652 2222 334555555555789999999995554432 2
Q ss_pred HHhhcCcCc---------ccccCCcEEEecC--CChhhhh
Q 014455 184 NGLLEREDW---------NDAIKVPLGVVPA--GTGNGMI 212 (424)
Q Consensus 184 ngL~~~~~~---------~~~~~~plgiiP~--GTgN~~A 212 (424)
..++..++. .....+|+..||. |||--+.
T Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t 165 (395)
T PRK15454 126 ALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETT 165 (395)
T ss_pred HHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhC
Confidence 223222210 0012479999997 5554333
No 91
>PLN02834 3-dehydroquinate synthase
Probab=89.16 E-value=2.6 Score=43.69 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE---Ec-----CChhhHHHHHHHhccCC---CceEEEEcCCc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ---ET-----TQQLHAKEIVKVLDLSK---YDGIVCVSGDG 177 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~---~T-----~~~~~a~~l~~~~~~~~---~d~vV~vGGDG 177 (424)
.+|++||.++...+ .+.+.+...|+.+|+++.++ .. .......++++.+...+ .|.||++|| |
T Consensus 100 g~rvlIVtD~~v~~-----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVAP-----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 37899999876532 25578999999999876552 22 22334444544444334 458998888 7
Q ss_pred hHHHHHHHh---hcCcCcccccCCcEEEecCC
Q 014455 178 ILVEVVNGL---LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 178 Tl~evvngL---~~~~~~~~~~~~plgiiP~G 206 (424)
++.++...+ +.+ .+|+-.||.-
T Consensus 174 sv~D~ak~~A~~y~r-------giplI~VPTT 198 (433)
T PLN02834 174 VIGDMCGFAAASYQR-------GVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEECCc
Confidence 777777643 333 6899999993
No 92
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=88.87 E-value=3.1 Score=41.86 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=66.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
++.+|+.-+.. .+++.+.+.+.|...|+.+.+..... .++..++++++...++|.||.+|| |.+.+++..+.
T Consensus 31 ~~~lvv~g~~~-----~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk~iD~aK~~A 104 (360)
T COG0371 31 SRALVVTGENT-----YAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GKTIDTAKAAA 104 (360)
T ss_pred CceEEEEChhH-----HHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cHHHHHHHHHH
Confidence 67888875544 34566789999999987555444332 345556666665468999999998 88889988887
Q ss_pred cCcCcccccCCcEEEecCCChhhhhh
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.+ .++|+-++|.=-.+|=..
T Consensus 105 ~~------~~~pfIsvPT~AS~Da~~ 124 (360)
T COG0371 105 YR------LGLPFISVPTIASTDAIT 124 (360)
T ss_pred HH------cCCCEEEecCcccccccc
Confidence 65 479999999865555433
No 93
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=88.85 E-value=2.5 Score=37.19 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=47.7
Q ss_pred CCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHhhc
Q 014455 121 GKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGLLE 188 (424)
Q Consensus 121 G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL~~ 188 (424)
|+..-..+. +++...|++.|+.+++.... .++...++++++...+++++| ++|+++-|--++.++-.
T Consensus 8 gs~SD~~~~-~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~ 78 (150)
T PF00731_consen 8 GSTSDLPIA-EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTT 78 (150)
T ss_dssp SSGGGHHHH-HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSS
T ss_pred CCHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccC
Confidence 444334444 68999999999999987764 667778888888766777654 78999999999999974
No 94
>PRK15138 aldehyde reductase; Provisional
Probab=86.60 E-value=5.7 Score=40.53 Aligned_cols=96 Identities=20% Similarity=0.267 Sum_probs=52.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+.-+.+=.. ...+ +++...|+ ++++.++. +..+ ....+.++.+...+.|.||++|| |.+-++.-.
T Consensus 30 ~~~livt~~~~~~~--~g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ 103 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKF 103 (387)
T ss_pred CeEEEECCCchHHh--cCcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 68888865544221 2234 46777785 66665542 2222 24445555555568999999999 444443333
Q ss_pred h---hcCcC----c--------ccccCCcEEEecC--CChhhh
Q 014455 186 L---LERED----W--------NDAIKVPLGVVPA--GTGNGM 211 (424)
Q Consensus 186 L---~~~~~----~--------~~~~~~plgiiP~--GTgN~~ 211 (424)
+ +..+. + .....+|+..||. |||--.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~ 146 (387)
T PRK15138 104 IAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSES 146 (387)
T ss_pred HHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCcccccc
Confidence 2 11110 0 0112479999997 665433
No 95
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=85.48 E-value=0.73 Score=50.01 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.2
Q ss_pred EEEeeecccCCCCCcc---------CcCCccCCCcEEEEEEcC
Q 014455 360 AVWLHNVPWGSENTMA---------APDAKFSDGYLDLIIIKD 393 (424)
Q Consensus 360 ~v~v~N~~~~g~~~~~---------aP~A~~~DG~ldliiv~~ 393 (424)
.+.|-|.|.|.||.++ +-.-.+||+.|+||.|=.
T Consensus 688 GIviLNIpSyaGGtNFWGsnk~dd~f~apSfDDriLEVVAvFG 730 (1099)
T KOG1170|consen 688 GIVILNIPSYAGGTNFWGSNKDDDEFTAPSFDDRILEVVAVFG 730 (1099)
T ss_pred eeEEEecccccCcccccCCCCCCCcccCCCcccceeEEeeeeh
Confidence 3678899988887654 233468999999997753
No 96
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=85.22 E-value=8.7 Score=38.91 Aligned_cols=68 Identities=13% Similarity=0.119 Sum_probs=46.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc-CCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T-~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..+.+. .+ +++...|+.+++++.++.. ..+ ....+.++.+...++|.||.+|| |++.++.-.
T Consensus 23 ~r~livtd~~~~------~~-~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSL------RA-AWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchH------HH-HHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHH
Confidence 789999877663 23 5788999999998876532 221 23445555555568999999998 555555443
No 97
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=84.50 E-value=7.5 Score=41.53 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh------hhHHHHHHHhc---cCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEE
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ------LHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLG 201 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~------~~a~~l~~~~~---~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plg 201 (424)
+.+...|+.+|+.+.......+ ..+.++.+.+. .++.|.||++|| |++.+++-.+...- ...+|+-
T Consensus 225 ~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv~D~AKfvA~~y----~rGi~~i 299 (542)
T PRK14021 225 DRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAATDLAGFVAATW----MRGIRYV 299 (542)
T ss_pred HHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHHHHHHHHHHHHH----HcCCCEE
Confidence 5677777777765433322222 22223333222 235777777777 67777665554210 0157777
Q ss_pred EecC
Q 014455 202 VVPA 205 (424)
Q Consensus 202 iiP~ 205 (424)
.+|.
T Consensus 300 ~vPT 303 (542)
T PRK14021 300 NCPT 303 (542)
T ss_pred EeCC
Confidence 7776
No 98
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=84.38 E-value=3.1 Score=41.50 Aligned_cols=84 Identities=19% Similarity=0.275 Sum_probs=51.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeE-EEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF-TVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~-~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+|++|+..+..- .. +.+++...|+..++.+ .-...+. .....++++.+...++|.||++|| |++.++.-.+.
T Consensus 24 ~~~livt~~~~~----~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia 97 (337)
T cd08177 24 SRALVLTTPSLA----TK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIA 97 (337)
T ss_pred CeEEEEcChHHH----HH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHH
Confidence 578888654332 22 3467888888764322 1111111 223344555554468999999998 88888887764
Q ss_pred cCcCcccccCCcEEEecC
Q 014455 188 EREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~ 205 (424)
-. ..+|+..||.
T Consensus 98 ~~------~~~p~i~IPT 109 (337)
T cd08177 98 LR------TGLPIIAIPT 109 (337)
T ss_pred HH------hcCCEEEEcC
Confidence 32 2689999995
No 99
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=84.29 E-value=6 Score=40.45 Aligned_cols=90 Identities=10% Similarity=0.215 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE----------EcCCh-hhHHHHHHHhcc---CCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLDL---SKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~----------~T~~~-~~a~~l~~~~~~---~~~d~vV~vG 174 (424)
.+|++||..+.--+-.. . +.+.+...|+.++++++++ .++.. ....++.+.+.. ++.|.||++|
T Consensus 42 ~~r~liVtD~~v~~~~~-~-l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHP-D-LLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhhh-h-HHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 47899999876543111 1 2368889999888765431 12222 224444444433 4456999999
Q ss_pred CCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
| |++-++.-.+.... ...+|+-.||.
T Consensus 120 G-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 8 77777765553210 02589999996
No 100
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=83.79 E-value=6.1 Score=40.06 Aligned_cols=91 Identities=8% Similarity=0.148 Sum_probs=55.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE----------EcCCh-hhHHHHHHHhcc---CCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLDL---SKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~----------~T~~~-~~a~~l~~~~~~---~~~d~vV~vG 174 (424)
.+|++||.++.-.+--. . +.+.+...|+.++++++++ .++.. ....++.+.+.. ++.|.||++|
T Consensus 30 ~~r~lvVtD~~v~~~~~-~-~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalG 107 (369)
T cd08198 30 RPKVLVVIDSGVAQANP-Q-LASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIG 107 (369)
T ss_pred CCeEEEEECcchHHhhh-h-HHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEEC
Confidence 47899999986654111 1 2367888898888655422 11221 223344444433 4456999999
Q ss_pred CCchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 175 GDGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
| |.+.++.-.+.... ...+|+-.||.=
T Consensus 108 G-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 108 G-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred C-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 8 88888876664211 026899999964
No 101
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=83.56 E-value=16 Score=36.80 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccC---CCceEEEEcCCchHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLS---KYDGIVCVSGDGILVEV 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~---~~d~vV~vGGDGTl~ev 182 (424)
++++|+..|..-+ +.+...|+.+++++.++. +..+ ....+.++.+... ++|.||.+||= +.-++
T Consensus 26 ~~~lvvtd~~~~~--------~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGG-S~iD~ 96 (347)
T cd08184 26 DPAVFFVDDVFQG--------KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGG-STLDV 96 (347)
T ss_pred CeEEEEECcchhh--------hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCc-HHHHH
Confidence 4566666433211 356667888888877652 2222 2234444444333 79999999984 44444
Q ss_pred HHH---hhcCcC-------c--ccccCCcEEEecC--CChhhhh
Q 014455 183 VNG---LLERED-------W--NDAIKVPLGVVPA--GTGNGMI 212 (424)
Q Consensus 183 vng---L~~~~~-------~--~~~~~~plgiiP~--GTgN~~A 212 (424)
.-. +...+. + .....+|+..||. |||--..
T Consensus 97 AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t 140 (347)
T cd08184 97 AKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEAS 140 (347)
T ss_pred HHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccC
Confidence 433 232211 0 0112468999996 6654433
No 102
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=83.53 E-value=11 Score=37.80 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHh-cCCeEEEEE----cCChhhHHHHHHHhc---cCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQE----TTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~-ag~~~~v~~----T~~~~~a~~l~~~~~---~~~~d~vV~vGGDGTl~ 180 (424)
.++++|+..+.-.+ .+.+++...|+. .++++.++. ...-..+.++++.+. ..+.|.||++|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 36889888865532 244688888977 676665543 122334445544443 345899999987 7777
Q ss_pred HHHHHhhcCcCcccccCCcEEEecC--CChhh
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPA--GTGNG 210 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~--GTgN~ 210 (424)
++.-.+...- ...+|+-.||. ++++|
T Consensus 97 D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 97 DVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 7765553210 02689999998 45554
No 103
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=83.41 E-value=19 Score=30.86 Aligned_cols=75 Identities=19% Similarity=0.061 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CCh---hhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQ---LHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~---~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
...+.+..|.... .. . +.....|+..|+.+..... +.. .-+.++.+.+...++|.+|+++||+=+
T Consensus 39 ~~~~r~y~~~~~~--~~---~-~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df 112 (149)
T cd06167 39 IVLARAYGNWTSP--ER---Q-RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDF 112 (149)
T ss_pred EEEEEEEEecCCc--hh---H-HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccH
Confidence 4455666665443 11 2 3566778888987654432 111 122344444444579999999999999
Q ss_pred HHHHHHhhcC
Q 014455 180 VEVVNGLLER 189 (424)
Q Consensus 180 ~evvngL~~~ 189 (424)
-.+++.|...
T Consensus 113 ~~~i~~lr~~ 122 (149)
T cd06167 113 VPLVERLREL 122 (149)
T ss_pred HHHHHHHHHc
Confidence 9999999876
No 104
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=83.23 E-value=6.2 Score=36.90 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.5
Q ss_pred HhccCCCceEEEEcCCch
Q 014455 161 VLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGT 178 (424)
+++.+.||+|++-||-|.
T Consensus 80 ~v~~~dyDalviPGG~g~ 97 (217)
T PRK11780 80 EADAEDFDALIVPGGFGA 97 (217)
T ss_pred HCChhhCCEEEECCCCch
Confidence 444568999999999885
No 105
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=81.60 E-value=6.9 Score=39.64 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
+|++|+..+..-+ ...+ +++...|+.+++++.++. ...+ ....+.++.+...++|.||++|| |++-++.-
T Consensus 27 ~~~lvvt~~~~~~---~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK 100 (374)
T cd08189 27 KKVLIVTDKGLVK---LGLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAK 100 (374)
T ss_pred CeEEEEeCcchhh---cccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 6899888765432 1134 578899999999877652 1122 22345555554568999999998 55555444
No 106
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=81.58 E-value=2.9 Score=42.17 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCCh--hhHHHHHHHhccCCCceEEEEcCCchHH--HHHH
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILV--EVVN 184 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~--evvn 184 (424)
|++||..| +-...+ .+ +++...|+++++++.++. ...+ .+..++++.+...++|.||++||=-++. -++.
T Consensus 23 r~lvVt~~-~~~~~~--~~-~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSG--LV-DRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHHT--HH-HHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECc-hHHhCc--cH-HHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHH
Confidence 89999988 433222 34 689999999999987655 3332 3445666666667899999999955543 2344
Q ss_pred HhhcCcCcc----------cccCCcEEEecCCChh
Q 014455 185 GLLEREDWN----------DAIKVPLGVVPAGTGN 209 (424)
Q Consensus 185 gL~~~~~~~----------~~~~~plgiiP~GTgN 209 (424)
-++..+... ....+|+..||.-.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 444432110 1123799999984444
No 107
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=81.49 E-value=9.8 Score=35.24 Aligned_cols=85 Identities=12% Similarity=0.140 Sum_probs=53.2
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchH-HHHHHHhhcC
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLER 189 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvngL~~~ 189 (424)
+.+|+ |.....-...++ +.++..+++.|+++.+..+.. +....+.++++...++|+||+++.+... .+.+.-+...
T Consensus 2 ig~i~-p~~~~~~~~~~~-~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~ 79 (267)
T cd01536 2 IGLVV-PSLNNPFWQAMN-KGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAA 79 (267)
T ss_pred EEEEe-ccccCHHHHHHH-HHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHC
Confidence 34444 544222223333 577888888999988887763 4455667777666689999999877543 2456666543
Q ss_pred cCcccccCCcEEEecC
Q 014455 190 EDWNDAIKVPLGVVPA 205 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~ 205 (424)
++|+-.+-.
T Consensus 80 -------~ip~V~~~~ 88 (267)
T cd01536 80 -------GIPVVTVDS 88 (267)
T ss_pred -------CCcEEEecC
Confidence 466655533
No 108
>PRK06756 flavodoxin; Provisional
Probab=81.44 E-value=7.6 Score=33.57 Aligned_cols=87 Identities=18% Similarity=0.275 Sum_probs=48.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL 186 (424)
++++||+= |..|+..++- +.+...|+..|++++++........ .+ ..++|.|+++. |+|.+...+..+
T Consensus 2 mkv~IiY~--S~tGnTe~vA-~~ia~~l~~~g~~v~~~~~~~~~~~----~~--~~~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 2 SKLVMIFA--SMSGNTEEMA-DHIAGVIRETENEIEVIDIMDSPEA----SI--LEQYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred ceEEEEEE--CCCchHHHHH-HHHHHHHhhcCCeEEEeehhccCCH----HH--HhcCCeEEEEeCCCCCCCCcHHHHHH
Confidence 57888984 4555665544 5788888888988877654332111 12 24688887764 677666533333
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
+..-........+.+++-.
T Consensus 73 l~~l~~~~l~~k~~~~fgt 91 (148)
T PRK06756 73 YDAMDSIDLTGKKAAVFGS 91 (148)
T ss_pred HHHHhcCCCCCCEEEEEeC
Confidence 3210000113456666444
No 109
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=81.33 E-value=16 Score=34.32 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++..+++.|+++.+..+... ....+.+.+...+.|+||+.+.+.. ...++.+... ++|+..+-.
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~~~ 95 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQ-DPLPERLAET-------GLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhC-------CCCEEEECC
Confidence 4578888889998887766544 3344444454468999999987654 2445655443 577776643
No 110
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=81.08 E-value=7.2 Score=34.50 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.+++...|+..|+++++.+. ..+++..++++++...+.++|| ++|+.+-|--|+.++-. .|+--+|.
T Consensus 14 ~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~---------~PVIgvP~ 84 (156)
T TIGR01162 14 MKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTP---------LPVIGVPV 84 (156)
T ss_pred HHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccC---------CCEEEecC
Confidence 36788899999999988764 4567778888887766777655 67889999999998854 45555566
Q ss_pred CC
Q 014455 206 GT 207 (424)
Q Consensus 206 GT 207 (424)
-+
T Consensus 85 ~~ 86 (156)
T TIGR01162 85 PS 86 (156)
T ss_pred Cc
Confidence 44
No 111
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=80.45 E-value=9.3 Score=36.16 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 93 RLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 93 ~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
..|...+.+.+. +.+++++| |.++.......|.+.....|+..|+++....+. + +..+.+ ...|+|++
T Consensus 18 ~~~~~~~~~~~~---~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~---d~~~~l--~~ad~I~v 85 (233)
T PRK05282 18 EHALPLIAELLA---GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--A---DPVAAI--ENAEAIFV 85 (233)
T ss_pred HHHHHHHHHHHc---CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--h---hhHHHH--hcCCEEEE
Confidence 445555555554 44565555 666644333345568899999999887655432 2 222333 47899999
Q ss_pred EcCCch
Q 014455 173 VSGDGI 178 (424)
Q Consensus 173 vGGDGT 178 (424)
.||+=+
T Consensus 86 ~GGnt~ 91 (233)
T PRK05282 86 GGGNTF 91 (233)
T ss_pred CCccHH
Confidence 999854
No 112
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=80.37 E-value=6.4 Score=39.59 Aligned_cols=97 Identities=18% Similarity=0.313 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCCh--hhHHHHHHHhccCC--CceEEEEcCCchHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQ--LHAKEIVKVLDLSK--YDGIVCVSGDGILVEVV 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~--~~a~~l~~~~~~~~--~d~vV~vGGDGTl~evv 183 (424)
+|++|+..+...+ ...+ +++...|+.. .+.++ ....+ ....+.++.+...+ .|.||++|| |++.++.
T Consensus 24 ~r~lvVtd~~~~~---~g~~-~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLA-RRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTA 96 (355)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHH
Confidence 7899998765422 1223 5677878644 23333 12222 33344444443334 999999998 6666655
Q ss_pred HHh---hcCcCc-------------ccccCCcEEEecC--CChhhhhh
Q 014455 184 NGL---LEREDW-------------NDAIKVPLGVVPA--GTGNGMIK 213 (424)
Q Consensus 184 ngL---~~~~~~-------------~~~~~~plgiiP~--GTgN~~Ar 213 (424)
-.+ +..++. .....+|+..||. |||--..+
T Consensus 97 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~ 144 (355)
T TIGR03405 97 KVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTP 144 (355)
T ss_pred HHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcC
Confidence 443 222210 0113579999997 55544433
No 113
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=79.00 E-value=30 Score=37.32 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=77.9
Q ss_pred eEEeeEEeCCCCHHHHHHHHHHHHHhhhhc----CCC-cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--
Q 014455 77 VVRKDFVFEPLSEDSKRLWCEKLRDFIDSF----GRP-KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-- 149 (424)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~----~r~-~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T-- 149 (424)
|+-..+++...+.+++....+.+.+.+... +.+ .++.||. |+..-..+. +++...|+..|+++++.+.
T Consensus 373 rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~----gs~sd~~~~-~~~~~~l~~~g~~~~~~v~sa 447 (577)
T PLN02948 373 RKMGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIM----GSDSDLPTM-KDAAEILDSFGVPYEVTIVSA 447 (577)
T ss_pred CeeEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEE----CchhhHHHH-HHHHHHHHHcCCCeEEEEECC
Confidence 455677777778776666555554443321 222 3455664 333333344 5888999999999988664
Q ss_pred -CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 150 -TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 150 -~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
..+.+..++++++...+.++|| ++|+.+-|--|+.++-. .|+-=+|..++
T Consensus 448 hr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~---------~pvi~vp~~~~ 499 (577)
T PLN02948 448 HRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTP---------LPVIGVPVKTS 499 (577)
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccC---------CCEEEcCCCCC
Confidence 4567778888888766777654 78999999999999864 45555666444
No 114
>PRK06703 flavodoxin; Provisional
Probab=77.83 E-value=9.9 Score=32.94 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=49.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHH----H
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE----V 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~e----v 182 (424)
++++|++= |..|.+.++- +.+...|...+++++++....... . + ..++|.|+++. |+|-+.. .
T Consensus 2 mkv~IiY~--S~tGnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~-~----~--l~~~d~viigspt~~~g~~p~~~~~f 71 (151)
T PRK06703 2 AKILIAYA--SMSGNTEDIA-DLIKVSLDAFDHEVVLQEMDGMDA-E----E--LLAYDGIILGSYTWGDGDLPYEAEDF 71 (151)
T ss_pred CeEEEEEE--CCCchHHHHH-HHHHHHHHhcCCceEEEehhhCCH-H----H--HhcCCcEEEEECCCCCCcCcHHHHHH
Confidence 57888884 4555665544 688888998998888765443221 1 2 34688888765 6775554 3
Q ss_pred HHHhhcCcCcccccCCcEEEecCCC
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.-|.... ....+++++-.|.
T Consensus 72 ~~~l~~~~----l~~k~~~vfg~g~ 92 (151)
T PRK06703 72 HEDLENID----LSGKKVAVFGSGD 92 (151)
T ss_pred HHHHhcCC----CCCCEEEEEccCC
Confidence 33332211 1245677775443
No 115
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=77.74 E-value=43 Score=29.79 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=60.3
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh---HHHHHHHhccCCCceEEE
Q 014455 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~---a~~l~~~~~~~~~d~vV~ 172 (424)
.+.|.+.+...++...--+..|-.+ . ..+.+.|...|++.. .++..-+ +.+.++-+-...+|.+|.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a-----~----~~l~~~l~~~Gf~pv--~~kG~~Dv~laIDame~~~~~~iD~~vL 111 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA-----S----DKLIEAVVNQGFEPI--IVAGDVDVRMAVEAMELIYNPNIDAVAL 111 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc-----c----HHHHHHHHHCCceEE--EecCcccHHHHHHHHHHhccCCCCEEEE
Confidence 4566666666666543334445433 1 245677888887643 3333222 233333332368999999
Q ss_pred EcCCchHHHHHHHhhcCcCcccccCCcEEE-ecCCChhhhhhh
Q 014455 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGV-VPAGTGNGMIKS 214 (424)
Q Consensus 173 vGGDGTl~evvngL~~~~~~~~~~~~plgi-iP~GTgN~~Ar~ 214 (424)
++|||=+..+++.|.++. .-.+++ .|.+|...|-++
T Consensus 112 vSgD~DF~~Lv~~lre~G------~~V~v~g~~~~ts~~L~~a 148 (160)
T TIGR00288 112 VTRDADFLPVINKAKENG------KETIVIGAEPGFSTALQNS 148 (160)
T ss_pred EeccHhHHHHHHHHHHCC------CEEEEEeCCCCChHHHHHh
Confidence 999999999999998763 112222 255566666554
No 116
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.52 E-value=14 Score=34.63 Aligned_cols=84 Identities=8% Similarity=0.083 Sum_probs=51.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEEEEcCCchH-HHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvngL 186 (424)
|+.||+ |.....--..++ +.++..+++.|+.+.+..+. .+....++.+.+...+.|+||+++.|-.. .+.+..+
T Consensus 1 ~Igvi~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~ 78 (273)
T cd06310 1 KIALVP-KGTTSDFWQAVK-AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEA 78 (273)
T ss_pred CeEEEe-cCCCcHHHHHHH-HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHH
Confidence 355665 433222222333 57778888899888777542 33444456666666789999999877542 4566666
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-.+
T Consensus 79 ~~~-------~ipvV~~ 88 (273)
T cd06310 79 KDA-------GIPVVLI 88 (273)
T ss_pred HHC-------CCCEEEe
Confidence 543 5666655
No 117
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=77.11 E-value=3.5 Score=36.12 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
.+++...|++.|++++........++ ++.+.+. ..|+|++.|||=.
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~--~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR--EADAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH--HSSEEEE--S-HH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH--hCCEEEECCCCHH
Confidence 35788999999999776666554444 5555543 6899999999953
No 118
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=76.31 E-value=15 Score=40.80 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCC---hhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
..+++-|.|-..|=-+. ...-...+..+...-|- +.-|.+ ..+...+++.+...+.|.+|++|||||+.-+.
T Consensus 419 g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt---~LGT~R~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~ 495 (762)
T cd00764 419 GHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGS---ELGTKRTLPKKDLETIAYNFQKYGIDGLIIVGGFEAYKGLL 495 (762)
T ss_pred CCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcc---cccccCCCcHHHHHHHHHHHHHcCCCEEEEECChhHHHHHH
Confidence 34677777766654322 11111355555554442 223332 34566777777778999999999999987654
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.|.+..+.-....+|+-.||.=--||+.-
T Consensus 496 -~L~~~~~~y~~~~i~vVgIPkTIDNDv~g 524 (762)
T cd00764 496 -QLREAREQYEEFCIPMVLIPATVSNNVPG 524 (762)
T ss_pred -HHHHHHhhCCCCCccEEEecccccCCCCC
Confidence 33321010012369999999988899874
No 119
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.76 E-value=17 Score=34.14 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCC--hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+.+.++.++. +....+..+.+...+.|+||+++.+.+ +.+.+..+... ++|+-.+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 577788888999988887764 333445666666678999999998865 45566666443 4666555
No 120
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=75.51 E-value=5 Score=39.94 Aligned_cols=92 Identities=20% Similarity=0.286 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCCcch--hhc-hHHHHHHHHHhcCCeEEEEEcCC-------hhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 111 RLYIFVNPFGGKKIA--SKI-FLDDVKPLLEDANIQFTVQETTQ-------QLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 111 ~~~vivNP~sG~~~a--~~~-~~~~v~~~l~~ag~~~~v~~T~~-------~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+++-|.|-..|--+. .+. -.+.+..+...-|- +.-|.+ +.+..++++.+...+.|.+|++|||||+.
T Consensus 32 ~v~g~~~G~~GL~~~~~~~l~~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~~~~~~~~~l~~~~Id~LivIGGdgS~~ 108 (324)
T TIGR02483 32 EVIGIRDGWRGLLEGDTVPLLDLEDVRGILPRGGT---ILGSSRTNPFKYEEDGDDKIVANLKELGLDALIAIGGDGTLG 108 (324)
T ss_pred eEEEEccCHHHhCCCCeEecCCHHHHHHHHhCCCc---cccCCCCCccccCHHHHHHHHHHHHHcCCCEEEEECCchHHH
Confidence 566666666554222 122 12355555554442 222221 23455677777777899999999999996
Q ss_pred HHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.+ +-|.+. .+++--||.=--||+.-
T Consensus 109 ~a-~~L~~~-------gi~vigiPkTIDNDl~g 133 (324)
T TIGR02483 109 IA-RRLADK-------GLPVVGVPKTIDNDLEA 133 (324)
T ss_pred HH-HHHHhc-------CCCEEeeccccCCCCcC
Confidence 54 455542 58888899988899874
No 121
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=75.23 E-value=35 Score=33.33 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=58.0
Q ss_pred EeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHH
Q 014455 83 VFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVK 160 (424)
Q Consensus 83 ~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~ 160 (424)
.+...+.+....+.+.+.+. . .+|+.+|+++.+.-++. ..+.++..+++.|+++.... +....+...+++
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~----g-~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~ 182 (341)
T cd06341 111 PFSGGTPASLTTWGDFAKDQ----G-GTRAVALVTALSAAVSA---AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQ 182 (341)
T ss_pred EecCCCcchhHHHHHHHHHc----C-CcEEEEEEeCCcHHHHH---HHHHHHHHHHHcCCccccccccCCCCCCHHHHHH
Confidence 34444444444454444322 2 46777777665422222 22567888999998754322 222345556666
Q ss_pred HhccCCCceEEEEcCCc-hHHHHHHHhhcCc
Q 014455 161 VLDLSKYDGIVCVSGDG-ILVEVVNGLLERE 190 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDG-Tl~evvngL~~~~ 190 (424)
++...++|+|++. +|+ ....++..+.+..
T Consensus 183 ~i~~~~pdaV~~~-~~~~~a~~~~~~~~~~G 212 (341)
T cd06341 183 QAAAAGADAIITV-LDAAVCASVLKAVRAAG 212 (341)
T ss_pred HHHhcCCCEEEEe-cChHHHHHHHHHHHHcC
Confidence 7665689988765 566 7778888887763
No 122
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=75.18 E-value=19 Score=32.72 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=41.8
Q ss_pred hHHHHHHHHHh--cCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 129 FLDDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 129 ~~~~v~~~l~~--ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+.+.++..+++ .++++.++.+.... ...++++++...++|+|+..+.+.+...++.-+..
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~ 80 (269)
T cd01391 18 LLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA 80 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 33567777888 67777776665543 56667777766789999999988877665555543
No 123
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=74.86 E-value=6 Score=41.25 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=69.0
Q ss_pred cEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHH---
Q 014455 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV--- 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv--- 183 (424)
.+++-|.|-..|=-.. ..+-.+.+..+...-| ++.-|.+ ..+..++++.+...+.|.++++|||||+.-+.
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ 196 (459)
T PTZ00286 120 KTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGG---TILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIY 196 (459)
T ss_pred cEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCC---ceeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 5788888876664322 1122235555555444 2333433 34566777888778999999999999987543
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHH
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVI 233 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~ 233 (424)
..+.++ ..++++--||.==-||+.-. ..+.|....++.++.+|.
T Consensus 197 ee~~~~-----g~~I~VIGIPKTIDNDI~~t-d~S~GFdTAv~~~~~aI~ 240 (459)
T PTZ00286 197 KELRRR-----KLNISVVGIPKTIDNDIPII-DESFGFQTAVEEAQNAIR 240 (459)
T ss_pred HHHHHh-----CCCceEEEeccccCCCCCCc-ccCcCchHHHHHHHHHHH
Confidence 233223 23689999999888998732 112255444444444443
No 124
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=74.71 E-value=63 Score=30.03 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CChhhHHHHHHHh
Q 014455 85 EPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVL 162 (424)
Q Consensus 85 ~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~~~a~~l~~~~ 162 (424)
...+.+.+....+.+.+. ...+++.++..+.. .+. . ..+.+...++++|+++..... ....+....++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~~~-~~~--~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l 186 (298)
T cd06268 115 APSDAQQAAALADYLAEK----GKVKKVAIIYDDYA-YGR--G-LAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKL 186 (298)
T ss_pred ccCcHHHHHHHHHHHHHh----cCCCEEEEEEcCCc-hhH--H-HHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHH
Confidence 344444555454444332 23578888876544 222 2 235677888888876543322 1224566666666
Q ss_pred ccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 163 DLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 163 ~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
...+.|.|++++.......++..+...
T Consensus 187 ~~~~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 187 KAAGPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred HhcCCCEEEEccccchHHHHHHHHHHc
Confidence 656778888877667777888888664
No 125
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=74.50 E-value=9.9 Score=37.71 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=59.9
Q ss_pred cEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCC------hhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
-+++-|.|-..|=-+. ...-.+.+..++..-|- +.-|.+ +.+-.++++.+...+.|.++++|||||+.-
T Consensus 31 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~ 107 (317)
T cd00763 31 LEVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT---FLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMG 107 (317)
T ss_pred CEEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe---eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHH
Confidence 4677787776664322 11112345555554442 223322 234456677777789999999999999876
Q ss_pred HHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
+. -|.+. .+|+--||.=--||+.-
T Consensus 108 a~-~L~e~-------~i~vigiPkTIDNDi~g 131 (317)
T cd00763 108 AM-RLTEH-------GFPCVGLPGTIDNDIPG 131 (317)
T ss_pred HH-HHHHc-------CCCEEEecccccCCCCC
Confidence 54 45442 58999999988899884
No 126
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=74.11 E-value=9.9 Score=37.43 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCC------hhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 111 RLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 111 ~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
+++-+.|-..|=-+. ..+-.+.+..++..-|- +.-|.+ +.+-.++++.+...+.|.+|++|||||+..+
T Consensus 31 ~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a 107 (301)
T TIGR02482 31 EVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGT---ILGTARCPEFKTEEGRQKAVENLKKLGIEGLVVIGGDGSYTGA 107 (301)
T ss_pred EEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCc---eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHH
Confidence 677777766553221 11112345555554442 222322 2334566777777799999999999998665
Q ss_pred HHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
. -|.+. ..+|+--||.=--||+.-
T Consensus 108 ~-~L~e~------~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 108 Q-KLYEE------GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred H-HHHHh------hCCCEEeecccccCCCcC
Confidence 3 34331 268888999998999874
No 127
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=73.93 E-value=29 Score=33.71 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=64.6
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeE--EEEEcCChhhHHHH
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF--TVQETTQQLHAKEI 158 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~--~v~~T~~~~~a~~l 158 (424)
-+.+.......+..+.+.+.+ ....+++.+|....+- ++ . ..+.++..+++.|+++ .+.......+...+
T Consensus 111 ~f~~~~~~~~~~~~~~~~~~~----~~g~~~v~iv~~~~~~-g~--~-~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~ 182 (343)
T PF13458_consen 111 VFRLSPSDSQQAAALAEYLAK----KLGAKKVAIVYPDDPY-GR--S-LAEAFRKALEAAGGKVVGEIRYPPGDTDFSAL 182 (343)
T ss_dssp EEESS--HHHHHHHHHHHHHH----TTTTSEEEEEEESSHH-HH--H-HHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHH
T ss_pred EEEEeccccHHHHHHHHHHHH----HcCCcEEEEEecCchh-hh--H-HHHHHHHHHhhcCceeccceecccccccchHH
Confidence 344444444444444443322 2236788888855322 22 2 2357888999999885 23344455666777
Q ss_pred HHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 159 VKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
++++...+.|.|+++++-+....+++.+....
T Consensus 183 ~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 214 (343)
T PF13458_consen 183 VQQLKSAGPDVVVLAGDPADAAAFLRQLRQLG 214 (343)
T ss_dssp HHHHHHTTTSEEEEESTHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEeccchhHHHHHHHHHhhc
Confidence 88887778999999998888999999987653
No 128
>PRK03202 6-phosphofructokinase; Provisional
Probab=72.17 E-value=11 Score=37.55 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEE---EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQ---ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~---~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
-+++-|.|-.-|=-+. ..+-.+.+..+...-|-.+--- ..+.+....++++.+...+.|.+|++|||||+..+.
T Consensus 32 ~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~- 110 (320)
T PRK03202 32 LEVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAK- 110 (320)
T ss_pred CeEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHH-
Confidence 3677777766654322 1111245666666555321110 111233456677777778999999999999998744
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
-|.+. .+++--||.==-||+.-
T Consensus 111 ~L~e~-------~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 111 RLTEH-------GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHHhc-------CCcEEEecccccCCCCC
Confidence 35542 68899999988898874
No 129
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=71.95 E-value=36 Score=38.60 Aligned_cols=73 Identities=18% Similarity=0.299 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHH--hcCCeEEEEE--c--CChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLE--DANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~--~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
.+|++|+..+..-+ ...+ +++...|+ .+++++.++. . .......++++.+...+.|.||++|| |++-++
T Consensus 480 ~~~~lvVtd~~~~~---~g~~-~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~ 554 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LGYV-DKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDA 554 (862)
T ss_pred CCEEEEEECcchhh---cchH-HHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 47889888765422 1123 57888998 7788776553 1 22244556666665678999999998 555555
Q ss_pred HHHh
Q 014455 183 VNGL 186 (424)
Q Consensus 183 vngL 186 (424)
.-.+
T Consensus 555 AK~i 558 (862)
T PRK13805 555 AKIM 558 (862)
T ss_pred HHHH
Confidence 4443
No 130
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=71.70 E-value=32 Score=31.84 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...++..|+.+.+..+++. ....++.+.+...++|+||+..++..-.++++-+... ++|+-++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAE-------RVPYVLA 85 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhC-------CCCEEEE
Confidence 5778888888998888776542 2233555666557899999988876434566665443 5665444
No 131
>PRK09271 flavodoxin; Provisional
Probab=70.56 E-value=12 Score=33.06 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=41.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE 181 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~e 181 (424)
++++|++=...|+ +.++- +.+...|...|+++++....... ..++ ..+..++|.|+++. |+|.+.+
T Consensus 1 mkv~IvY~S~tGn--Te~~A-~~ia~~l~~~g~~v~~~~~~~~~-~~~~--~~~~~~~d~vilgt~T~~~G~~p~ 69 (160)
T PRK09271 1 MRILLAYASLSGN--TREVA-REIEERCEEAGHEVDWVETDVQT-LAEY--PLDPEDYDLYLLGTWTDNAGRTPP 69 (160)
T ss_pred CeEEEEEEcCCch--HHHHH-HHHHHHHHhCCCeeEEEeccccc-cccc--ccCcccCCEEEEECcccCCCcCCH
Confidence 4688888666654 44433 68888899999888766543321 1111 12234689888887 6787554
No 132
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.05 E-value=38 Score=31.38 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
+.+...+++.|+.+.++.++...+..++.+++...+.|+||+.+.|-+- +.+.-+... .+|+-.+-..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~~ 86 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS-ELAEECRRN-------GIPVVLINRY 86 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhc-------CCCEEEECCc
Confidence 5678888999998887766654445556666666789999999887553 445555443 5777666433
No 133
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=69.80 E-value=8.8 Score=39.85 Aligned_cols=96 Identities=18% Similarity=0.236 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCCc-----chhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 110 KRLYIFVNPFGGKK-----IASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~-----~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
.+++-|.|-..|=- +-..+-.+.+..+...-| ++.-|.+ +.+..++++.+...+.|.++++|||||+.-+.
T Consensus 113 ~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~ 189 (443)
T PRK06830 113 RRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG---TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGAS 189 (443)
T ss_pred eEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC---ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 56787877666532 222222245666555544 3334433 34466777778778999999999999987553
Q ss_pred H---HhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 184 N---GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 184 n---gL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
. .+.++ ..++++--||.==-||+.-
T Consensus 190 ~l~ee~~~~-----g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 190 AIAEEIERR-----GLKISVIGIPKTIDNDINF 217 (443)
T ss_pred HHHHHHHHh-----CCCceEEEeccccCCCCcC
Confidence 3 22222 2368888899888899864
No 134
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=69.15 E-value=26 Score=30.38 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.++.++....+.|++++++.|.+.++..+...++.. .+|+||+-
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~-~~dgiIIN 73 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD-DVDGIIIN 73 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC-TTSEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh-hCCEEEEc
Confidence 445667777778999999999999999988888753 48888754
No 135
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=68.74 E-value=33 Score=32.02 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCc-hHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDG-Tl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+....+ ..+..+.+...++|+||+..+|. +..++++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~-------~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDA-------GIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHc-------CCCEEEe
Confidence 577888999999888776643222 23445555556899999998875 456777776553 4665444
No 136
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=68.63 E-value=22 Score=30.13 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCeEEEEEcC-----Chhh-----HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTVQETT-----QQLH-----AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~-----~~~~-----a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+.+...|+..|+++...... .... +.++.+.+....+|.+|++.||+=+-.+++.|..+
T Consensus 50 ~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 50 KSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 35567788899866544321 1111 12333333334579999999999999999999865
No 137
>PLN02564 6-phosphofructokinase
Probab=68.14 E-value=10 Score=39.81 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=60.3
Q ss_pred cEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHH--
Q 014455 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN-- 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn-- 184 (424)
.+++-|.|-..|=-.. ..+-.+.+..+...-| ++.-|.+. .+..++++.+...+.|.++++|||||+.-+..
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~L~ 196 (484)
T PLN02564 120 TRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASVIY 196 (484)
T ss_pred eEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCC---ceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHHHH
Confidence 4677787766664322 1121235566655444 34444433 34567777887789999999999999876432
Q ss_pred -HhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 185 -GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 185 -gL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.+.++ ..++++--||.==-||+.-
T Consensus 197 e~~~~~-----g~~i~VIGIPKTIDNDI~~ 221 (484)
T PLN02564 197 EEIRRR-----GLKVAVAGIPKTIDNDIPV 221 (484)
T ss_pred HHHHHc-----CCCceEEEecccccCCCcC
Confidence 22223 2356688889888898874
No 138
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=67.64 E-value=47 Score=31.74 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-ChhhHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~ 187 (424)
+.+.+|+ |.....--.++. ..++..+++.|+++.+..+. .+....++.+.+...+.|+|++.+.| ..+++.+.-+.
T Consensus 27 ~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~ 104 (295)
T PRK10653 27 DTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMAN 104 (295)
T ss_pred CeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 4455554 654433233344 57788899999988776554 23334455556655689999887765 34455665554
Q ss_pred cCcCcccccCCcEEEec
Q 014455 188 EREDWNDAIKVPLGVVP 204 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP 204 (424)
.. ++|+-.+-
T Consensus 105 ~~-------~ipvV~~~ 114 (295)
T PRK10653 105 QA-------NIPVITLD 114 (295)
T ss_pred HC-------CCCEEEEc
Confidence 33 56766663
No 139
>PLN02335 anthranilate synthase
Probab=67.18 E-value=22 Score=33.29 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=45.0
Q ss_pred hhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 104 ~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
.+....++++||=|--| |...+...|++.|++++++..... .+.++ ....+|+||+.||-|..++.
T Consensus 13 ~~~~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~~~----~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 13 NSSKQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVEEL----KRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred cccCccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHHHH----HhcCCCEEEEcCCCCChhhc
Confidence 34455678888866333 334688889999999988865321 22222 22468999999999998764
No 140
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=67.17 E-value=37 Score=30.99 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=50.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.+.++..++..|+++.+..+... ....+.++++...++|+||+.+.+......+.-+... ++|+-.+....
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~~~ 89 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhc-------CCCEEEeccCC
Confidence 346788888889998887776543 3455667777667899999999887654445555433 67887776665
Q ss_pred h
Q 014455 208 G 208 (424)
Q Consensus 208 g 208 (424)
.
T Consensus 90 ~ 90 (264)
T cd01537 90 P 90 (264)
T ss_pred C
Confidence 4
No 141
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=67.14 E-value=84 Score=30.66 Aligned_cols=77 Identities=13% Similarity=-0.040 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|+.... -++. .. +.++..+++.|+++.... .....+...++.++...+.|+|++.+..+.+..++..+
T Consensus 135 ~~~v~ii~~~~~-~g~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (340)
T cd06349 135 FKKVAILSVNTD-WGRT--SA-DIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQA 210 (340)
T ss_pred CcEEEEEecCCh-HhHH--HH-HHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHH
Confidence 467887775443 2322 23 578888999998765322 22344566677777777899999988878888888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
...
T Consensus 211 ~~~ 213 (340)
T cd06349 211 RAV 213 (340)
T ss_pred HHc
Confidence 765
No 142
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=66.40 E-value=41 Score=32.57 Aligned_cols=89 Identities=11% Similarity=0.196 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGI 170 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~v 170 (424)
....+.+.+++.+ +..+++.||+||..... .. ..+.++...+..|+++..+......+.....+.+. .+.|++
T Consensus 116 ~~~~~l~l~~~l~---P~~k~igvl~~~~~~~~--~~-~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~-~~~da~ 188 (294)
T PF04392_consen 116 PIEKQLELIKKLF---PDAKRIGVLYDPSEPNS--VA-QIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA-EKVDAL 188 (294)
T ss_dssp -HHHHHHHHHHHS---TT--EEEEEEETT-HHH--HH-HHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC-TT-SEE
T ss_pred CHHHHHHHHHHhC---CCCCEEEEEecCCCccH--HH-HHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh-ccCCEE
Confidence 4456666666654 45689999999986432 22 23578888888899887777777788877777775 467765
Q ss_pred EEEcCCchHHHHHHHhh
Q 014455 171 VCVSGDGILVEVVNGLL 187 (424)
Q Consensus 171 V~vGGDGTl~evvngL~ 187 (424)
+ +..|+++..-...+.
T Consensus 189 ~-~~~~~~~~~~~~~i~ 204 (294)
T PF04392_consen 189 Y-LLPDNLVDSNFEAIL 204 (294)
T ss_dssp E-E-S-HHHHHTHHHHH
T ss_pred E-EECCcchHhHHHHHH
Confidence 5 467888876555544
No 143
>PRK14071 6-phosphofructokinase; Provisional
Probab=66.29 E-value=16 Score=37.02 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=40.1
Q ss_pred HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
..++++.+...+.|.++++|||||+. .++-|.+. ..+++--||.=--||+.-+
T Consensus 96 ~~~~~~~l~~~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 96 SQEIIDGYHSLGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHHHHHHHcCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCc
Confidence 35566677777899999999999986 44556542 2689999998888998743
No 144
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=66.26 E-value=33 Score=32.19 Aligned_cols=83 Identities=11% Similarity=0.157 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh---hHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhh
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~---~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~ 187 (424)
+.||+...+...- ..+. +.++..+++.|+++.+..+...+ ...++.+.+...+.|+||+.+.+.+ +.+.+..+.
T Consensus 2 igvi~~~~~~~~~-~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (275)
T cd06320 2 YGVVLKTLSNEFW-RSLK-EGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAK 79 (275)
T ss_pred eeEEEecCCCHHH-HHHH-HHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHH
Confidence 5566654332221 2223 56788888899888776553322 2334555665568999998887653 567777665
Q ss_pred cCcCcccccCCcEEEe
Q 014455 188 EREDWNDAIKVPLGVV 203 (424)
Q Consensus 188 ~~~~~~~~~~~plgii 203 (424)
+. ++|+-.+
T Consensus 80 ~~-------~iPvV~~ 88 (275)
T cd06320 80 KK-------GIPVVNV 88 (275)
T ss_pred HC-------CCeEEEE
Confidence 43 5676555
No 145
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.00 E-value=41 Score=31.61 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCc-hHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDG-Tl~evvngL~~~~~~~~~~~~plgii 203 (424)
..+...+++.|+++.+..+.. +....+..+.+...+.|+|++.+.|- .+.+.+..+... .+|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAA-------GVPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHC-------CCCEEEe
Confidence 578888888998877665542 22233455666667899999988763 334566666543 5676655
No 146
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=65.98 E-value=15 Score=35.61 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=41.1
Q ss_pred EEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC----------hhhHHHHHHHhccCCCceEE-EEcCCchH
Q 014455 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 115 ivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~vV-~vGGDGTl 179 (424)
|+.|.|+-... +.+ +.....|+..|+++.+-.+-. ...|.++.+.+.....++|+ +.||+|+.
T Consensus 3 iiapSs~~~~~-~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~ 76 (282)
T cd07025 3 IVAPSSPIDEE-ERL-ERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN 76 (282)
T ss_pred EEeCCCCCCcH-HHH-HHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH
Confidence 78898876543 445 578889999998776544322 12344555555555678776 56999974
No 147
>PRK07308 flavodoxin; Validated
Probab=65.66 E-value=28 Score=29.89 Aligned_cols=84 Identities=24% Similarity=0.224 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHH----H
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVE----V 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~e----v 182 (424)
.++.|++=-.+| .+.++- +.+...|...|+.+++........ .+ ..++|.|+++- |+|.+.+ .
T Consensus 2 ~~~~IvY~S~tG--nTe~iA-~~ia~~l~~~g~~~~~~~~~~~~~-----~~--l~~~d~vi~g~~t~g~G~~p~~~~~f 71 (146)
T PRK07308 2 ALAKIVYASMTG--NTEEIA-DIVADKLRELGHDVDVDECTTVDA-----SD--FEDADIAIVATYTYGDGELPDEIVDF 71 (146)
T ss_pred ceEEEEEECCCc--hHHHHH-HHHHHHHHhCCCceEEEecccCCH-----hH--hccCCEEEEEeCccCCCCCCHHHHHH
Confidence 367888855444 445433 678888888888887765443321 12 24678777655 7786654 3
Q ss_pred HHHhhcCcCcccccCCcEEEecCCC
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+..|-.. .....+.+++-.|.
T Consensus 72 l~~l~~~----~l~~k~~~vfG~Gd 92 (146)
T PRK07308 72 YEDLADL----DLSGKIYGVVGSGD 92 (146)
T ss_pred HHHHhcC----CCCCCEEEEEeeCC
Confidence 3333221 12356677765554
No 148
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=64.72 E-value=18 Score=37.08 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.4
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.....+++.+...+.|.++++|||||+.-+. -|.+.-. +....+|+--||.==-||+.-
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPkTIDNDl~~ 157 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPKTIDNDVVP 157 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeeeeeeCCCCC
Confidence 3445667777777899999999999987653 3322000 001268999999988899863
No 149
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=64.69 E-value=14 Score=33.24 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC--CchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG--DGTl~evvngL~ 187 (424)
++++|+|-...|+ ..++ .+.|...|.. |++++++..+... ..+..+||.||+.++ -|.+...+..++
T Consensus 1 MkilIvY~S~~G~--T~~i-A~~Ia~~l~~-g~~v~~~~~~~~~-------~~~l~~yD~vIlGspi~~G~~~~~~~~fl 69 (177)
T PRK11104 1 MKTLILYSSRDGQ--TRKI-ASYIASELKE-GIQCDVVNLHRIE-------EPDLSDYDRVVIGASIRYGHFHSALYKFV 69 (177)
T ss_pred CcEEEEEECCCCh--HHHH-HHHHHHHhCC-CCeEEEEEhhhcC-------ccCHHHCCEEEEECccccCCcCHHHHHHH
Confidence 3688899766654 4443 3578888887 8887776544321 123457999888776 466666666665
Q ss_pred cCcCcccccCCcEEEecCCC
Q 014455 188 EREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GT 207 (424)
.+.. ......+++++-+|-
T Consensus 70 ~~~~-~~l~~K~v~~F~v~l 88 (177)
T PRK11104 70 KKHA-TQLNQMPSAFFSVNL 88 (177)
T ss_pred HHHH-HHhCCCeEEEEEech
Confidence 4311 112357888888873
No 150
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=64.64 E-value=24 Score=32.88 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=42.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE-EEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~-v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
.+++.+| |.|+.-...+.|.++.+..|+..|+++. +...+. +..++.+.+ .+.|.|+|.|| -|++
T Consensus 32 ~~~i~FI--PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~--~~~~Ie~~l--~~~d~IyVgGG-NTF~ 97 (224)
T COG3340 32 RKTIAFI--PTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP--PLAAIENKL--MKADIIYVGGG-NTFN 97 (224)
T ss_pred CceEEEE--ecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC--CHHHHHHhh--hhccEEEECCc-hHHH
Confidence 3455544 9998888777788999999999999874 333333 333444443 24667666555 4554
No 151
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=64.59 E-value=13 Score=37.28 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCCcchh--hchHHHHHHHHHhcCCeEEEEEcCC------hhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 110 KRLYIFVNPFGGKKIAS--KIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~--~~~~~~v~~~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.+++-|.|-..|=-+.. .+-.+.+..+...-|- +.-|.+ ...-.++++.+...+.|.+|++|||||+..
T Consensus 31 ~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs---~LgtsR~~~~~~~~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~ 107 (338)
T cd00363 31 LEVYGIYEGYAGLVEGDIKELDWESVSDIINRGGT---IIGSARCKEFRTEEGRAKAAENLKKHGIDALVVIGGDGSYTG 107 (338)
T ss_pred CEEEEEecChHHhCCCCeEeCCHHHhcchhhCCCe---ecccCCCCccCCHHHHHHHHHHHHHhCCCEEEEeCCHHHHHH
Confidence 46777777666543221 1111234443333332 222221 233456777777778999999999999875
Q ss_pred HHH---HhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 182 VVN---GLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 182 vvn---gL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
+.. .+.++ ..++++--||.=--||+.
T Consensus 108 a~~L~e~~~~~-----~~~i~vigiPkTIDNDl~ 136 (338)
T cd00363 108 ADLLTEEWPSK-----YQGFNVIGLPGTIDNDIK 136 (338)
T ss_pred HHHHHHHHHhc-----CCCccEEEeeecccCCCc
Confidence 432 22222 236899999976678887
No 152
>PRK05637 anthranilate synthase component II; Provisional
Probab=64.51 E-value=32 Score=31.89 Aligned_cols=60 Identities=20% Similarity=0.143 Sum_probs=41.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
++|+++|=|=-| |...+..+|+..|..++++..+.+ ..++ ....+|+||+.||-|...+.
T Consensus 1 ~~~il~iD~~ds--------f~~nl~~~l~~~g~~~~v~~~~~~--~~~l----~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 1 MTHVVLIDNHDS--------FVYNLVDAFAVAGYKCTVFRNTVP--VEEI----LAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred CCEEEEEECCcC--------HHHHHHHHHHHCCCcEEEEeCCCC--HHHH----HhcCCCEEEEeCCCCCHHHh
Confidence 356776666222 223578889999998888765532 2222 23478999999999999886
No 153
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=64.22 E-value=46 Score=31.69 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++..+++.|+.+.+..+.. +....++.+++...++|+||+.+.|.. +.+.+..+... .+|+-.+=.
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~~ 88 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYDR 88 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEECC
Confidence 577888888999888877753 333345666666678999999998875 46666666543 566666533
No 154
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=64.14 E-value=7.2 Score=38.02 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
-.++++.+...+.|.+|++|||||+..+ +-|.+. ..+++-.||.=--||+.-
T Consensus 81 ~~~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~g 132 (282)
T PF00365_consen 81 RKKIVENLKKLGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPG 132 (282)
T ss_dssp HHHHHHHHHHTTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTT
T ss_pred hhhHHHHHHHhCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCC
Confidence 3456677776789999999999998775 555432 248999999977788875
No 155
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.09 E-value=45 Score=31.14 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.++.++.. ....+..+.+...++|+||+.+.|.. ..+.+.-+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 5777888888988877655432 22334445555578999998887754 34566555443 5666554
No 156
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=63.71 E-value=43 Score=31.32 Aligned_cols=67 Identities=15% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHHhc---CCeEE--EEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDA---NIQFT--VQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~a---g~~~~--v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++. |..++ +..+.. .....+..+.+...+.|+||+.+.|-. +.++++.+... ++|+-.+
T Consensus 19 ~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~-------~iPvv~~ 91 (272)
T cd06300 19 DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEA-------GIPVVSF 91 (272)
T ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC-------CCeEEEE
Confidence 4667777777 87444 433432 223345556665579999999998853 45577766543 5676655
Q ss_pred c
Q 014455 204 P 204 (424)
Q Consensus 204 P 204 (424)
-
T Consensus 92 ~ 92 (272)
T cd06300 92 D 92 (272)
T ss_pred e
Confidence 3
No 157
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.21 E-value=50 Score=30.59 Aligned_cols=79 Identities=13% Similarity=0.191 Sum_probs=49.1
Q ss_pred cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccc
Q 014455 117 NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDA 195 (424)
Q Consensus 117 NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~ 195 (424)
.|.....-... +.+.++..+++.|+.+.+..+.. +....++.+.+...++|+|++.+.+....++++.+...
T Consensus 6 ~~~~~~~~~~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~------ 78 (268)
T cd06289 6 INDLTNPFFAE-LAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAES------ 78 (268)
T ss_pred ecCCCcchHHH-HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhc------
Confidence 35544333332 33577788888888876654433 33334566666667899999998776544567666543
Q ss_pred cCCcEEEe
Q 014455 196 IKVPLGVV 203 (424)
Q Consensus 196 ~~~plgii 203 (424)
++|+-.+
T Consensus 79 -~ipvV~~ 85 (268)
T cd06289 79 -GIPVVLV 85 (268)
T ss_pred -CCCEEEE
Confidence 5666555
No 158
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=62.25 E-value=28 Score=31.48 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
|...+..+|++.|.+++++.... ..+.++ ....+|+||+.||.|..++.
T Consensus 11 f~~nl~~~l~~~~~~~~v~~~~~-~~~~~~----~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 11 FTYNLYQYFCELGTEVMVKRNDE-LQLTDI----EQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred hHHHHHHHHHHCCCcEEEEeCCC-CCHHHH----HhcCCCeEEEcCCCCChHhC
Confidence 44568888999999888777543 233332 22368999999999998764
No 159
>PRK05568 flavodoxin; Provisional
Probab=61.99 E-value=24 Score=29.93 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+++++|++-. +.|+..++. +.+..-+...|++++++....... . + ..++|.|+++.
T Consensus 1 m~~~~IvY~S--~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-~----~--~~~~d~iilgs 56 (142)
T PRK05568 1 MKKINIIYWS--GTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-D----D--VKGADVVALGS 56 (142)
T ss_pred CCeEEEEEEC--CCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-H----H--HHhCCEEEEEC
Confidence 3578888865 445555544 577788888898888776544321 1 2 24688888765
No 160
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=61.60 E-value=31 Score=30.88 Aligned_cols=48 Identities=19% Similarity=0.171 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
|...+...|++.|++++++........ + .+ ..++|+||+.||.|+..+
T Consensus 10 ~~~~~~~~l~~~G~~~~~~~~~~~~~~--~-~~--~~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 10 FTYNLVQYLRELGAEVVVVRNDEITLE--E-LE--LLNPDAIVISPGPGHPED 57 (184)
T ss_pred cHHHHHHHHHHcCCceEEEeCCCCCHH--H-Hh--hcCCCEEEECCCCCCccc
Confidence 445678889999998887766443221 1 12 357999999999998653
No 161
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=61.20 E-value=74 Score=29.54 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=48.7
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcC
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERED 191 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~ 191 (424)
.|++ |.....--...+ ..++..+++.|+++.+..+....+ -.++.+.+...++|+|+++..|-. ...++-+...
T Consensus 3 ~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~-- 77 (270)
T cd06296 3 GLVF-PDLDSPWASEVL-RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALRRT-- 77 (270)
T ss_pred EEEE-CCCCCccHHHHH-HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcC--
Confidence 3444 444332223333 577888888898887776654332 234556666678999999887744 2445555443
Q ss_pred cccccCCcEEEe
Q 014455 192 WNDAIKVPLGVV 203 (424)
Q Consensus 192 ~~~~~~~plgii 203 (424)
++|+-.+
T Consensus 78 -----~ipvV~i 84 (270)
T cd06296 78 -----GIPFVVV 84 (270)
T ss_pred -----CCCEEEE
Confidence 5666554
No 162
>CHL00101 trpG anthranilate synthase component 2
Probab=61.11 E-value=48 Score=30.00 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
|...+...|++.|+++.+...... ...+ +....+|+||+.||.|...+
T Consensus 11 ft~~l~~~l~~~g~~~~v~~~~~~-~~~~----~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 11 FTYNLVQSLGELNSDVLVCRNDEI-DLSK----IKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC-CHHH----HhhCCCCEEEECCCCCChHH
Confidence 334678889999988887665432 2222 22247999999999998875
No 163
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=60.84 E-value=75 Score=29.38 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+.+.+..+.. +..-.++.+.+...+.|+||+.+.|..- +.++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~-------~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKR-------GIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhC-------CCCEEEE
Confidence 577788888898888776643 2233345556656789999999887653 456666543 5666555
No 164
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=60.73 E-value=53 Score=31.65 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHHh--cCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLED--ANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~--ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...++. .++.+.+..+.+. ....++.+.+...+.|+||+++.|.. +.++++.+... .+|+-.+
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQK-------NIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHC-------CCCEEEe
Confidence 467777777 6666665555321 12224455555678999999988865 56777777543 5676655
No 165
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=60.67 E-value=75 Score=30.75 Aligned_cols=87 Identities=8% Similarity=0.076 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.|++.-.+.. --.+++ +.+...+++.|+.+.+..+.. .....++.+.+...++|+||+.+.+-.-.+.+..+
T Consensus 60 ~~~~Igvv~~~~~~~-~~~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 137 (328)
T PRK11303 60 RTRSIGLIIPDLENT-SYARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRL 137 (328)
T ss_pred CCceEEEEeCCCCCc-hHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHH
Confidence 345566666322221 112233 467778888998887776643 23334555566557899999988754334555555
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... ++|+-.+
T Consensus 138 ~~~-------~iPvV~v 147 (328)
T PRK11303 138 QND-------GLPIIAL 147 (328)
T ss_pred Hhc-------CCCEEEE
Confidence 433 5676665
No 166
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=60.46 E-value=54 Score=30.57 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHh-cCCeEEEEEcC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLED-ANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~-ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++ .++++.+..+. .+....+..+++...+.|+||+.+.|.. ..+++.-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~ 87 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYV 87 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 467777888 78777765553 2233345555555568999999988854 34666666554 5676555
No 167
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=59.80 E-value=88 Score=30.47 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=51.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.+++. .....--..++ +.+...+++.|+.+.+..+... ....++.+.+...++|+||+.+.+....+.++-+
T Consensus 63 ~~~~Igvv~~-~~~~~~~~~i~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 140 (342)
T PRK10014 63 QSGVIGLIVR-DLSAPFYAELT-AGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMA 140 (342)
T ss_pred CCCEEEEEeC-CCccchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHH
Confidence 4456777763 22211112222 4677788888887766655432 2234555566567899999998876545566666
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-.+
T Consensus 141 ~~~-------~iPvV~~ 150 (342)
T PRK10014 141 EEK-------GIPVVFA 150 (342)
T ss_pred hhc-------CCCEEEE
Confidence 443 5677666
No 168
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=59.57 E-value=70 Score=29.64 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh--hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~--~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+.... ...++.+.+...++|+||+.+++....+.++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvv~i 86 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA-------GVPYVRI 86 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc-------CCCEEEE
Confidence 57888888999888776655322 233444445456899999998875334666665443 4666554
No 169
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=59.51 E-value=55 Score=27.69 Aligned_cols=72 Identities=18% Similarity=0.243 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
-+.+-++-||.++..++.. -.+..+|...|+++-+. .+-..-|....++ .+.+++.+.| +|+-|++..+..
T Consensus 36 i~~vev~~np~~~~~~g~G---~~~a~~l~~~gvdvvi~-~~iG~~a~~~l~~---~GIkv~~~~~--~~V~e~i~~~~~ 106 (121)
T COG1433 36 IKNVEVIENPAASAEKGAG---IRIAELLVDEGVDVVIA-SNIGPNAYNALKA---AGIKVYVAPG--GTVEEAIKAFLE 106 (121)
T ss_pred EEEEEEeecccccccCcch---HHHHHHHHHcCCCEEEE-CccCHHHHHHHHH---cCcEEEecCC--CCHHHHHHHHhc
Confidence 3567889999777655543 25788899999765332 3333334554444 3677888777 999999999976
Q ss_pred C
Q 014455 189 R 189 (424)
Q Consensus 189 ~ 189 (424)
-
T Consensus 107 g 107 (121)
T COG1433 107 G 107 (121)
T ss_pred C
Confidence 5
No 170
>PRK14072 6-phosphofructokinase; Provisional
Probab=59.39 E-value=25 Score=36.28 Aligned_cols=60 Identities=7% Similarity=0.091 Sum_probs=40.4
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
..-.++++.+...+.|.+|++|||||+.-+.. |.+.-. +...++++--||.==-||+.-+
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~~-L~e~~~-~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTALK-VSQLAK-KMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHHH-HHHHHH-HhCCCceEEEeeecccCCCCCC
Confidence 34456666676678999999999999876532 322000 0012589999998778998854
No 171
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=59.16 E-value=71 Score=29.15 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+.++..++..|+++.+...... ....+.++.+...++|+||+.+.|.+-.. +.-+... ++|+-.+
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~-------~ipvv~~ 84 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAAL-------GIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHc-------CCCEEEe
Confidence 335777778888888877655432 22445666666679999999999987655 5444433 5666555
No 172
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.09 E-value=42 Score=31.64 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+++.+..+.. +..-.+..+.+...+.|+||+.+.| +...+.+..+... ++|+-.+
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDM 86 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEe
Confidence 467777888898888776653 2333455666666789999998876 5567777777654 5676665
No 173
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=59.08 E-value=41 Score=31.67 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=25.1
Q ss_pred ccCCCceEEEEcCCch---------HHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 163 DLSKYDGIVCVSGDGI---------LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 163 ~~~~~d~vV~vGGDGT---------l~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.+.||+|++.||=|. +.+++....+. ..+++.|=.|.
T Consensus 91 ~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAIChgp 137 (231)
T cd03147 91 NPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCHGP 137 (231)
T ss_pred CHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHH
Confidence 3468999999999775 34445544443 45777775554
No 174
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=59.07 E-value=65 Score=26.84 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHh
Q 014455 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~---~r~~~~~-vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (424)
+.|+.+.+.+++.+... ++..++. |.++. ..+...|.+......+..|+.++++.- ....+..+..+++
T Consensus 7 ~va~~i~~~l~~~i~~l~~~~~~P~Laii~vg~----d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 7 PVAKEIKEELKEEIEKLKEKGITPKLAIILVGD----DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---EEEEEEES------HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEecCC----ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34555666666654432 3344454 44444 345557888888999999999887654 3444555556665
Q ss_pred cc-CCCceEEE
Q 014455 163 DL-SKYDGIVC 172 (424)
Q Consensus 163 ~~-~~~d~vV~ 172 (424)
.. ...++|++
T Consensus 83 N~D~~V~GIlv 93 (117)
T PF00763_consen 83 NEDPSVHGILV 93 (117)
T ss_dssp HH-TT-SEEEE
T ss_pred hCCCCCCEEEE
Confidence 43 34666664
No 175
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=58.72 E-value=87 Score=28.99 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=48.3
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
+.|++ |.....--.. +.+.+...+++.|+.+.+..+++. ....+..+.+...+.|+|++++.+.. ..++..|...
T Consensus 2 i~vv~-p~~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l~~~- 77 (268)
T cd06273 2 IGAIV-PTLDNAIFAR-VIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PALLDLLARR- 77 (268)
T ss_pred eEEEe-CCCCCchHHH-HHHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHhC-
Confidence 34555 4433322232 335788888889988776555432 33345666666668999999987654 3445555443
Q ss_pred CcccccCCcEEEe
Q 014455 191 DWNDAIKVPLGVV 203 (424)
Q Consensus 191 ~~~~~~~~plgii 203 (424)
++|+-.+
T Consensus 78 ------~iPvv~~ 84 (268)
T cd06273 78 ------GVPYVAT 84 (268)
T ss_pred ------CCCEEEE
Confidence 5665544
No 176
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=58.70 E-value=61 Score=30.63 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-----hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-----~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+.++..++..|+++.+..+.. ...-.++.+.+...+.|+||+.+.+.+..+.+.-+.+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC
Confidence 567788888998877764321 12223444555557899999998766556777766654
No 177
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=58.59 E-value=44 Score=31.60 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=38.2
Q ss_pred CCCcEEEEEEcCCCC----CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc----CCCce
Q 014455 107 GRPKRLYIFVNPFGG----KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDG 169 (424)
Q Consensus 107 ~r~~~~~vivNP~sG----~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~----~~~d~ 169 (424)
..|+++.+|||-..= ...+...=.+.++..|+..|+++++..=-...+..+.++++.. ..+|.
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~ 75 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDS 75 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCE
Confidence 457788888875531 1112111236899999999998887665555555555554432 25665
No 178
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=58.47 E-value=53 Score=28.08 Aligned_cols=71 Identities=11% Similarity=-0.041 Sum_probs=47.7
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
.++-|+..-.... -.+-+..+|+.+|++ |+.+.......++++.+...+.|.|++++=|+|--+.+..+++
T Consensus 5 v~~a~~g~D~Hd~---g~~iv~~~l~~~Gfe--Vi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 5 ILVAKMGQDGHDR---GAKVIATAYADLGFD--VDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred EEEEeeCCCccHH---HHHHHHHHHHhCCcE--EEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHH
Confidence 3455665533222 235678899999965 4555554555677777777899999999999976666555544
No 179
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=58.39 E-value=66 Score=30.06 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+.++..+++.|+++.+..+..+....++.+.+...+.|+|++++.+
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 4677888888888777655544444566666666789999999877
No 180
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.30 E-value=81 Score=29.30 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcC
Q 014455 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLER 189 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~ 189 (424)
.+.++..+++.|+++.+..+.. +....++.+.+...+.|+||+.+.|.. ..+.+..+...
T Consensus 19 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~ 80 (275)
T cd06317 19 NKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQA 80 (275)
T ss_pred HHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHC
Confidence 3577888888999887765542 222334555555568999999888753 45666666543
No 181
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=58.26 E-value=63 Score=32.45 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=47.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE----cCChhhHHHHHHHhccCCC---ceEEEEcCCchHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKY---DGIVCVSGDGILVEV 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~---d~vV~vGGDGTl~ev 182 (424)
+|++||..+.-.+ .+.+.+...|. ++.+.++. ...-..+.++.+.+...+. |.||++|| |++-++
T Consensus 20 ~r~lIVtD~~v~~-----l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ 91 (346)
T cd08196 20 ENDVFIVDANVAE-----LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDV 91 (346)
T ss_pred CeEEEEECccHHH-----HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHH
Confidence 6788888875532 24456777776 34444432 1122344455555544444 89999988 666666
Q ss_pred HHHh---hcCcCcccccCCcEEEecC
Q 014455 183 VNGL---LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 183 vngL---~~~~~~~~~~~~plgiiP~ 205 (424)
+-.+ +.+ .+|+-.||.
T Consensus 92 ak~vA~~~~r-------gi~~i~iPT 110 (346)
T cd08196 92 TTFVASIYMR-------GVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHc-------CCCeEEecc
Confidence 5554 344 467777776
No 182
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=58.18 E-value=27 Score=34.43 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=42.0
Q ss_pred EEEEcCCCCCcch-hhchHHHHHHHHHhcCCeEEEEEcCCh----------hhHHHHHHHhccCCCceEE-EEcCCchH
Q 014455 113 YIFVNPFGGKKIA-SKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 113 ~vivNP~sG~~~a-~~~~~~~v~~~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~vV-~vGGDGTl 179 (424)
.-|+.|.++-... ...+ +.....|+..|+++.+-.+-.. ..|.++.+.+.....++|+ +.||+|+.
T Consensus 3 I~ivAPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRL-ERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHH-HHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh
Confidence 3478899875421 2345 4677889999988776554322 2344565555556678777 56889963
No 183
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=58.14 E-value=71 Score=30.74 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccC--CCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLS--KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~--~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+.++..+++.|+.+.+..+.... ...++.+.+... +.|+||+.+.+-...++++.+... ++|+-++=
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~~ 89 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLVN 89 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEEe
Confidence 56778888889888776654322 233455566556 899999988765555667766553 56766663
No 184
>PRK05670 anthranilate synthase component II; Provisional
Probab=57.86 E-value=22 Score=32.11 Aligned_cols=48 Identities=23% Similarity=0.283 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
|...+...|++.|++++++.....+ ..++ .. .++|+||+.||-|+..+
T Consensus 11 f~~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~---~~~dglIlsgGpg~~~d 58 (189)
T PRK05670 11 FTYNLVQYLGELGAEVVVYRNDEIT-LEEI-EA---LNPDAIVLSPGPGTPAE 58 (189)
T ss_pred hHHHHHHHHHHCCCcEEEEECCCCC-HHHH-Hh---CCCCEEEEcCCCCChHH
Confidence 5567889999999998887664322 2222 22 24899999999999865
No 185
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=57.84 E-value=1e+02 Score=29.84 Aligned_cols=87 Identities=13% Similarity=0.144 Sum_probs=51.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.|++ |.-...-...+ .+.+...+++.|+.+.+..+... ....+..+.+...+.|+||+.+.+..-.+.+..|
T Consensus 59 ~~~~Igvi~-~~~~~~~~~~~-~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 136 (327)
T TIGR02417 59 RSRTIGLVI-PDLENYSYARI-AKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKL 136 (327)
T ss_pred CCceEEEEe-CCCCCccHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHH
Confidence 455677776 32222112222 35777888889988877666432 2233445555557899999988765334566666
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-++
T Consensus 137 ~~~-------~iPvV~~ 146 (327)
T TIGR02417 137 QNE-------GLPVVAL 146 (327)
T ss_pred Hhc-------CCCEEEE
Confidence 443 4666655
No 186
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=57.77 E-value=1.9e+02 Score=28.19 Aligned_cols=79 Identities=14% Similarity=0.069 Sum_probs=49.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
...+++.+|+... .-++. +.+.++..+++.|+++.-. ......+...++.++...+.|.|++.+-.+-.-.++.
T Consensus 142 ~~~~~va~l~~~~-~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 217 (344)
T cd06345 142 HGFKTAAIVAEDA-AWGKG---IDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQ 217 (344)
T ss_pred CCCceEEEEecCc-hhhhH---HHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHH
Confidence 3457888776543 33332 2357788898888875432 2222345566677776678998887776655666676
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.+...
T Consensus 218 ~~~~~ 222 (344)
T cd06345 218 QWAEQ 222 (344)
T ss_pred HHHHc
Confidence 66654
No 187
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=57.57 E-value=31 Score=32.53 Aligned_cols=77 Identities=18% Similarity=0.253 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCe-EEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChh
Q 014455 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGN 209 (424)
Q Consensus 131 ~~v~~~l~~ag~~-~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN 209 (424)
+.+...++..+.. +..+-......+.++++.+...+.|+|.+.|-||.-.+-+..++.+= .....+|+-+.|....+
T Consensus 5 ~~l~~~~~~~~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--k~~~~lPvilfP~~~~~ 82 (240)
T COG1646 5 KYLLEKLDWRGKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--KERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHhhhccceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--HhhcCCCEEEecCChhc
Confidence 3455556544432 23333333356778888888889999999999997765555444321 01247999999987654
No 188
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=57.40 E-value=93 Score=28.75 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+.+.+..+.. +....++.+.+...+.|+||+++.+.+ .++++-|... .+|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~~~-------~ipvV~~ 84 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFKRS-------PTPVVLA 84 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHhcC-------CCCEEEE
Confidence 577788888898887776653 233345555655578999999986543 3555655432 4666444
No 189
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=57.19 E-value=18 Score=40.12 Aligned_cols=101 Identities=10% Similarity=0.168 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCCCcch----hh-chHHHHHHHHHhcCCeEEEEEcCC------hhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 110 KRLYIFVNPFGGKKIA----SK-IFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a----~~-~~~~~v~~~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
-+++.|.|-..|=-+. .+ .| +.+..++..-|- +.-|.+ ...-.+.++.+...+.|.+|++|||||
T Consensus 34 ~~V~gi~~Gy~GL~~g~~~i~~l~~-~~V~~i~~~GGT---~LGTsR~~~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgS 109 (762)
T cd00764 34 AKVFFVYEGYEGLVKGGDYIKQAEW-ESVSNWLQEGGT---IIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGS 109 (762)
T ss_pred CEEEEEecCHHHHhCCCCCceeCCH-HHHHHHHhCCCC---cccCCCCCcccCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 4678888766654322 11 24 467777776652 222222 123345566777779999999999999
Q ss_pred HHHHH----------HHhhcCc-----CcccccCCcEEEecCCChhhhhhh
Q 014455 179 LVEVV----------NGLLERE-----DWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 179 l~evv----------ngL~~~~-----~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
+.-+- ..|.+.. ..+....+++--||.==-||+.-+
T Consensus 110 l~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 110 LTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 87653 2233321 011123578888998778998843
No 190
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=57.16 E-value=13 Score=32.92 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=35.0
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
..|.++.+.+...++ .||..|+.|..-.+..+.++.. ...+||+|.+-
T Consensus 18 ~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------g~viGVlp~~l 65 (159)
T TIGR00725 18 EIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------CeEEEECChhh
Confidence 456778888876666 5555666888888888887653 56899999753
No 191
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=57.13 E-value=57 Score=29.95 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
...+++ ++-..++. . . .+.+.....|+..|++...........-.++.+.+ ...|+|++.|||=
T Consensus 28 ~~~~i~-~iptA~~~-~-~-~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l--~~ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVL-FIPTASGD-R-D-EYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL--LEADGIFVGGGNQ 91 (210)
T ss_pred CCCeEE-EEeCCCCC-h-H-HHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH--hhCCEEEEcCCcH
Confidence 344444 44444443 2 1 12356788899889876544332111122334443 4689999999885
No 192
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=57.10 E-value=69 Score=28.97 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=37.8
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh
Q 014455 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (424)
Q Consensus 97 ~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~ 153 (424)
+.|+..|.-..+..|++.|.++++|-|+.. ....+...|...|.++-++......
T Consensus 4 ~~l~~~l~~~~~~~kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 4 NAIRTNIQFSGAEIKVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred HHHHHHHhhhcCCCcEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 344444433333477888999999999876 2346788899999888777665443
No 193
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=57.03 E-value=1.8e+02 Score=28.81 Aligned_cols=66 Identities=17% Similarity=0.314 Sum_probs=46.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEc
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
.+.+-+.+|++..+..-- ..+. +-++..+++.|+.+-+..+.+ +..-.++.+.+...++|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~~~~-~~i~-~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITNPFF-AEIL-KGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCCchH-HHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 345667777764444222 2233 678899999999998888887 44445566666667899999999
No 194
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=56.96 E-value=76 Score=30.47 Aligned_cols=86 Identities=16% Similarity=0.243 Sum_probs=59.5
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
.+.||+...+..--+ ++. .-++..+++.|+.+-+..|.+..+..+..+.+...+.|+||+++-+.. .+-+..+...
T Consensus 3 ~IGvivp~~~npff~-~ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~- 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFFA-EII-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRLIKS- 78 (279)
T ss_dssp EEEEEESSSTSHHHH-HHH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHT-
T ss_pred EEEEEECCCCCcHHH-HHH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHHHHc-
Confidence 466777555433322 234 578889999999988888887776667777777789999999977776 5666666654
Q ss_pred CcccccCCcEEEecCC
Q 014455 191 DWNDAIKVPLGVVPAG 206 (424)
Q Consensus 191 ~~~~~~~~plgiiP~G 206 (424)
++|+-.+=.-
T Consensus 79 ------~iPvV~~~~~ 88 (279)
T PF00532_consen 79 ------GIPVVLIDRY 88 (279)
T ss_dssp ------TSEEEEESS-
T ss_pred ------CCCEEEEEec
Confidence 4676555443
No 195
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=56.84 E-value=78 Score=28.57 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
+|++||=|=-| |...+..+|++.|.++++...... +. .++ +.+|+||+.||-|.
T Consensus 2 ~~iliid~~ds--------f~~~i~~~l~~~g~~~~v~~~~~~-~~----~~l--~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDS--------FTFNLVDLIRKLGVPMQVVNVEDL-DL----DEV--ENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCc--------hHHHHHHHHHHcCCcEEEEECCcc-Ch----hHh--ccCCEEEECCCCCC
Confidence 57888877333 333588899999998888764321 11 122 46899999999994
No 196
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.40 E-value=47 Score=28.41 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=25.1
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~ 151 (424)
+|+++|. .|+ -++...++. +.+...+++.+++++++....
T Consensus 1 Mkilii~gS~r-~~~~t~~l~-~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPR-KNSNTRKLA-EAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSS-TTSHHHHHH-HHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCC-CCCHHHHHH-HHHHHHHHHcCCEEEEEeccc
Confidence 3566665 332 234444444 688999998899998875543
No 197
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.36 E-value=87 Score=29.59 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+.+.+..+.. +..-.++.+.+...++|+||+.+.|.. ..+.+.-+... .+|+-.+
T Consensus 20 ~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~-------~iPvV~~ 87 (280)
T cd06315 20 EGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKA-------GIPVVGW 87 (280)
T ss_pred HHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHC-------CCCEEEe
Confidence 567788888888776655542 222335566666679999999988743 23445555432 5676666
No 198
>PRK06490 glutamine amidotransferase; Provisional
Probab=56.09 E-value=15 Score=34.82 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..++++||.|-.++.- ..+..+|+..|.+++++.....+. +-.. .++||+||+.||=++++
T Consensus 6 ~~~~vlvi~h~~~~~~-------g~l~~~l~~~g~~~~v~~~~~~~~---~p~~--l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 6 DKRPVLIVLHQERSTP-------GRVGQLLQERGYPLDIRRPRLGDP---LPDT--LEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CCceEEEEecCCCCCC-------hHHHHHHHHCCCceEEEeccCCCC---CCCc--ccccCEEEEECCCCCCC
Confidence 4678999998766431 356788889999988775532211 1112 35799999999988754
No 199
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=56.00 E-value=66 Score=30.33 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchH-HHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+.+.+..+..+....+..+.+...+.|+||+.+-|... -++++.+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 5678888889988877655533333344555555789999999888533 3456666553 5676555
No 200
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=55.51 E-value=1.9e+02 Score=27.58 Aligned_cols=78 Identities=12% Similarity=0.020 Sum_probs=46.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|..+.. .++ . ..+.++..+++.|+++... ......+....+.++...+.|+|++.+.+...-.+++.
T Consensus 132 g~~~vail~~~~~-~~~--~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~ 207 (312)
T cd06333 132 GVKTVAFIGFSDA-YGE--S-GLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKN 207 (312)
T ss_pred CCCEEEEEecCcH-HHH--H-HHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHH
Confidence 3578888765432 222 2 2357788899999876422 21122234444444434578998888766656678888
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 208 l~~~ 211 (312)
T cd06333 208 LRER 211 (312)
T ss_pred HHHc
Confidence 8765
No 201
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=55.40 E-value=74 Score=29.83 Aligned_cols=66 Identities=6% Similarity=-0.054 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh---hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ---LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~---~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
..++..++..|+++.+..+... ..-.+..+.+...+.|+||+.+.|.+-.+.+..+... .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 4677778888988877655422 2223455565557899999998876543344555433 5676655
No 202
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=55.23 E-value=1.1e+02 Score=28.31 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+-+...+++.|+.+.+..+.+... ..++.+.+...++|+||+.+-|-.... +.-+... .+|+-++-
T Consensus 19 ~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~-~~~~~~~-------~ipvV~~~ 85 (268)
T cd06270 19 SGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDE-LIELAAQ-------VPPLVLIN 85 (268)
T ss_pred HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH-HHHHhhC-------CCCEEEEe
Confidence 577888889999988877654322 234555555578999999987644322 4555432 56766664
No 203
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=55.16 E-value=34 Score=29.16 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=46.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE-EEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV-QETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v-~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvng 185 (424)
++++||+=...| ++.++- +.+...|...++++++ +.... .... ..+..++|.|+++. |+|.+.+-+..
T Consensus 1 M~i~IiY~S~tG--nTe~iA-~~ia~~l~~~g~~v~~~~~~~~---~~~~--~~~~~~~d~iilgs~t~~~g~~p~~~~~ 72 (140)
T TIGR01754 1 MRILLAYLSLSG--NTEEVA-FMIQDYLQKDGHEVDILHRIGT---LADA--PLDPENYDLVFLGTWTWERGRTPDEMKD 72 (140)
T ss_pred CeEEEEEECCCC--hHHHHH-HHHHHHHhhCCeeEEecccccc---cccC--cCChhhCCEEEEEcCeeCCCcCCHHHHH
Confidence 367888865554 455444 6788888888877652 21110 0000 11234688888777 68876644444
Q ss_pred hhcCcCcccccCCcEEEecCC
Q 014455 186 LLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~G 206 (424)
++..-.. ....++++-.|
T Consensus 73 fl~~l~~---~~k~~avfgtg 90 (140)
T TIGR01754 73 FIAELGY---KPSNVAIFGTG 90 (140)
T ss_pred HHHHhcc---cCCEEEEEEcC
Confidence 4332110 13456665554
No 204
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=55.14 E-value=44 Score=31.57 Aligned_cols=98 Identities=11% Similarity=0.144 Sum_probs=61.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccC-CCce-EEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYDG-IVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~-~~d~-vV~vGGDGTl~evvngL~ 187 (424)
+++..++|+++|.||.-... .+...|.+.|-.+.++.+....+..+..+..... .++. +.+.++| +.. .+.-.+
T Consensus 1 M~vItf~s~KGGaGKTT~~~--~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~~~ 76 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAM--ALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILEDAY 76 (231)
T ss_pred CCeEEEecCCCCCcHHHHHH--HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHHHH
Confidence 35788999999999976433 6788898899999999999999988887765332 3443 3333333 222 222222
Q ss_pred cCcCcccccCCcEEEecC-CChhhhhhh
Q 014455 188 EREDWNDAIKVPLGVVPA-GTGNGMIKS 214 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~-GTgN~~Ar~ 214 (424)
...+ .....+.+|=. |++|-++..
T Consensus 77 e~a~---~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 77 EAAE---ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHHH---hcCCCEEEEeCCCCCchhHHH
Confidence 2100 11345666665 777666554
No 205
>PRK04155 chaperone protein HchA; Provisional
Probab=55.02 E-value=36 Score=33.26 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.0
Q ss_pred cCCCceEEEEcCCchHH
Q 014455 164 LSKYDGIVCVSGDGILV 180 (424)
Q Consensus 164 ~~~~d~vV~vGGDGTl~ 180 (424)
.+.||+|++.||=|...
T Consensus 145 ~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI 161 (287)
T ss_pred cccccEEEECCCCchHH
Confidence 46899999999988743
No 206
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.88 E-value=70 Score=29.69 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=44.7
Q ss_pred HHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
.+.++..+++.|+++.+..+.. .....+..+++...+.|+||+.+-|.. ..+.++.+... ++|+-.+
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 86 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITV 86 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEE
Confidence 3578888888998887766643 233445566666678999999887654 35566665443 5666665
No 207
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=54.84 E-value=69 Score=29.59 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+.+.+..+.+ +....++.+++...++|+|++.+-+.. ..+.+..+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 578888888898887765543 233345666665678999998765543 23566666443 5666555
No 208
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=54.81 E-value=1.8e+02 Score=26.91 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|..... .+. . ..+.++..++++|+++..... ....+...+++++...+.|+|++++.+.....+++.+
T Consensus 136 ~~~v~iv~~~~~-~~~--~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 211 (299)
T cd04509 136 WKKVAILYDDDS-YGR--G-LLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQA 211 (299)
T ss_pred CcEEEEEecCch-HHH--H-HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHH
Confidence 467887775544 222 2 225677888888877643222 2224555666676555678888877668888888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
...
T Consensus 212 ~~~ 214 (299)
T cd04509 212 AEA 214 (299)
T ss_pred HHc
Confidence 765
No 209
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=54.81 E-value=36 Score=28.92 Aligned_cols=66 Identities=18% Similarity=0.147 Sum_probs=37.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh----hHHHHH-----HHhccCCCceEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEIV-----KVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~----~a~~l~-----~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+|+.|++.|.. .... + ..+...|+.+++++.++-.+... +...+. .+.....||.|++.||.+...
T Consensus 2 ~~v~ill~~g~---~~~e-~-~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGV---DAAE-L-SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCc---CHHH-H-HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH
Confidence 56778887633 2222 3 35677888888888766433210 000111 111223589999999988643
No 210
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=54.79 E-value=83 Score=29.32 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
+.+...+++.|+.+.+..+....+ ..++.+.+...+.|+|++.+++....++++-+... ++|+-.+-..
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-------~ipvV~i~~~ 88 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASL-------DLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhC-------CCCEEEEecc
Confidence 578888999999887776654332 34555666667899999998764334455544433 5777666443
No 211
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=54.44 E-value=30 Score=34.76 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeE---EEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~---~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
--+++-|+|-..|=-.. .+.-...+..++..-|-.. .....+.+......++.+...+.|.+|++|||||..-..
T Consensus 32 g~eV~Gi~~Gy~GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~ 111 (347)
T COG0205 32 GLEVFGIYNGYLGLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDGSYTGAA 111 (347)
T ss_pred CCEEEEEecchhhhcCCcceeccccchhHHHhcCCeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCChHHHHH
Confidence 45677777776664332 2221235566666655321 111122222334556667677899999999999976543
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
-|.+. ..+++-=||.==-||+.-
T Consensus 112 -~Lae~------~~i~vVGvPkTIDNDi~~ 134 (347)
T COG0205 112 -LLAEE------GGIPVVGVPKTIDNDISG 134 (347)
T ss_pred -HHHHh------cCCcEEecCCCccCCCcc
Confidence 34332 147888889877899883
No 212
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=53.98 E-value=93 Score=28.83 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
..+...|.+.|+.+.+.....+. ..+. .++ ...+|+||+.||.|...+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~-~~~-~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPR-LADE-AAV-AAQFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcC-HHHH-HHh-hcCCCEEEECCCCCChhh
Confidence 35677788889988877655422 2222 222 247999999999997653
No 213
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=53.81 E-value=1.7e+02 Score=28.75 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|+....- ++. +.+.++..|++.|+++.... .....+....++++...+.|.|++.+.....-.++..+
T Consensus 138 ~~~v~ii~~~~~~-g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~ 213 (347)
T cd06335 138 FKKVALLLDNTGW-GRS---NRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGM 213 (347)
T ss_pred CCeEEEEeccCch-hhh---HHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHH
Confidence 4788888866532 332 23577888999998764322 12234555666777667899999998887888888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 214 ~~~ 216 (347)
T cd06335 214 AKL 216 (347)
T ss_pred HHc
Confidence 665
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=53.65 E-value=1.8e+02 Score=26.69 Aligned_cols=80 Identities=15% Similarity=0.130 Sum_probs=49.2
Q ss_pred HHHhcCCeEEEEEcCChhhHHHHHHH------------hccCCCceEEEEcCCchHHHHHHHhhcCcCc-------c---
Q 014455 136 LLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLEREDW-------N--- 193 (424)
Q Consensus 136 ~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~vV~vGGDGTl~evvngL~~~~~~-------~--- 193 (424)
.|.++|.++.++..+......+++.+ .+..++|.||++-+|..+|+.+-.......+ +
T Consensus 28 ~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~ 107 (202)
T PRK06718 28 TLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGN 107 (202)
T ss_pred HHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe
Confidence 34446666666654443343444432 2345789999999999999998866543211 0
Q ss_pred -------cccCCcEEEecCCChhhhhhhh
Q 014455 194 -------DAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 194 -------~~~~~plgiiP~GTgN~~Ar~l 215 (424)
....+.+||--.|.+=.+|+.+
T Consensus 108 f~~Pa~~~~g~l~iaIsT~G~sP~la~~l 136 (202)
T PRK06718 108 VVFPSALHRGKLTISVSTDGASPKLAKKI 136 (202)
T ss_pred EEEeeEEEcCCeEEEEECCCCChHHHHHH
Confidence 0114567777777777777766
No 215
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.59 E-value=97 Score=27.01 Aligned_cols=74 Identities=20% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+..|+++.-=-..|..++. +.+...|+.+|+++. .+....--.|+++.+.....|+|+++|=||-=.+.+-++.
T Consensus 11 ~rprvlvak~GlDgHd~ga----kvia~~l~d~GfeVi--~~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGA----KVIARALADAGFEVI--NLGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccch----HHHHHHHHhCCceEE--ecCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHH
Confidence 3445554433334443433 467899999997654 4433333356666665578999999999985444444443
No 216
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=53.30 E-value=29 Score=32.31 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=30.6
Q ss_pred HhccCCCceEEEEcCCchH---------------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 161 VLDLSKYDGIVCVSGDGIL---------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGTl---------------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
++..+.||+|++.||.|.. ++.+..+++.- ...+.+++-|=.|. -.+++.+
T Consensus 77 ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f---~~~gK~VaAIChgp-~~L~~~~ 142 (213)
T cd03133 77 KLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREF---HQAGKPIGAICIAP-ALAAKIL 142 (213)
T ss_pred HCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHH---HHCCCeEEEECHHH-HHHHHHh
Confidence 3445679999999998852 33344443321 01256888887776 3455544
No 217
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=53.22 E-value=1.5e+02 Score=29.05 Aligned_cols=86 Identities=12% Similarity=-0.009 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
..++.+++ |.-..--.... .+-++..+++.|+++.+..+.. +....++.+.+...+.|+||+.+.+.. +.+.++-+
T Consensus 25 ~~~Ig~i~-~~~~~~f~~~~-~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~ 102 (330)
T PRK10355 25 EVKIGMAI-DDLRLERWQKD-RDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEA 102 (330)
T ss_pred CceEEEEe-cCCCchHHHHH-HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 34555555 43333222222 3567888888999888776643 223345556665679999999987754 45667766
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-.+
T Consensus 103 ~~~-------~iPvV~i 112 (330)
T PRK10355 103 KQE-------GIKVLAY 112 (330)
T ss_pred HHC-------CCeEEEE
Confidence 543 5677666
No 218
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=52.86 E-value=51 Score=29.44 Aligned_cols=43 Identities=23% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 133 v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
+...|+++|..+.++..... ..+ +....+|+||+.||-|...+
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~~----~~~~~~dgiil~GG~~~~~~ 54 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AEE----ILKLDPDGIFLSNGPGDPAL 54 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HHH----HhhcCCCEEEECCCCCChhH
Confidence 56778888988877654432 222 23347999999999876544
No 219
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=52.64 E-value=21 Score=39.68 Aligned_cols=101 Identities=17% Similarity=0.199 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCCCcch----hhchHHHHHHHHHhcCCeEEEEEcCCh------hhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 110 KRLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQQ------LHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a----~~~~~~~v~~~l~~ag~~~~v~~T~~~------~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
-+++-|.|-..|=-+. .+.-.+.+..++..-|- +.-|.+. ..-.++++.+...+.|.+|++|||||+
T Consensus 31 ~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~~~~~~~~~~L~~~~Id~LivIGGdgS~ 107 (745)
T TIGR02478 31 CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT---IIGTARCKEFRERPGRLKAARNLIKRGIDNLVVIGGDGSL 107 (745)
T ss_pred CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc---eecCCCCCcccCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence 4788888877664322 11212466777666552 2223221 122456667777789999999999998
Q ss_pred HHHH----------HHhhcCc-----CcccccCCcEEEecCCChhhhhh
Q 014455 180 VEVV----------NGLLERE-----DWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 180 ~evv----------ngL~~~~-----~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.-+. ..|.+.. ..+....+++--||.==-||+.-
T Consensus 108 ~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~g 156 (745)
T TIGR02478 108 TGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCG 156 (745)
T ss_pred HHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCC
Confidence 7643 2222211 01112368899999655799884
No 220
>PLN02884 6-phosphofructokinase
Probab=52.59 E-value=38 Score=34.91 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=60.2
Q ss_pred cEEEEEEcCCCCCcchh--hc--hHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIAS--KI--FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~--~~--~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
++++-|.|-..|=-+.. .+ -.+.+..++..-| ++.-|.+ .....++++.+...+.|.+|++|||||+.-+..
T Consensus 85 ~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GG---t~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~ 161 (411)
T PLN02884 85 KNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGG---SLLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANA 161 (411)
T ss_pred cEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCC---ceeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHH
Confidence 46777888777643322 11 1245666666554 2333433 223556777777789999999999999875432
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
|.+.- .....++++--||.==-||+.-
T Consensus 162 -L~~~~-~~~g~~i~vIGIPkTIDNDi~~ 188 (411)
T PLN02884 162 -IHNEC-RKRKMKVSVVGVPKTIDNDILL 188 (411)
T ss_pred -HHHHH-HHcCCCceEEeccccccCCCcC
Confidence 22200 0011358899999888899874
No 221
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=52.59 E-value=26 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=25.9
Q ss_pred CCCceEEEEcCCchH--------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 165 SKYDGIVCVSGDGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl--------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
..||.|++.||.|+. .+.+....+ ...+|+-|-.|+. .+|+
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~-------~~k~i~~ic~G~~-~La~ 123 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAE-------ANKPVAAICHGPQ-ILAA 123 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHH-------cCCEEEEECcHHH-HHHH
Confidence 368999999997753 222333332 2578888888765 3444
No 222
>PRK05569 flavodoxin; Provisional
Probab=52.35 E-value=41 Score=28.48 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=35.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++++||+= |+.|+..++. +.+..-++..|.+++++....... .+ ..++|.|+++.
T Consensus 2 ~ki~iiY~--S~tGnT~~iA-~~i~~~~~~~g~~v~~~~~~~~~~-----~~--~~~~d~iilgs 56 (141)
T PRK05569 2 KKVSIIYW--SCGGNVEVLA-NTIADGAKEAGAEVTIKHVADAKV-----ED--VLEADAVAFGS 56 (141)
T ss_pred CeEEEEEE--CCCCHHHHHH-HHHHHHHHhCCCeEEEEECCcCCH-----HH--HhhCCEEEEEC
Confidence 46777774 4455655544 578888888888887766544322 12 34788888776
No 223
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=52.32 E-value=1.2e+02 Score=29.85 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcC-CeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag-~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evv 183 (424)
..++.+.++++-.+...- .+ +.+.+...+++.| +.+.+..+.. .....+..+.+...+.|+||+++.|.. ..+++
T Consensus 22 ~~~~~Igvv~~~~~~~f~-~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l 99 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFM-SV-VRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVI 99 (330)
T ss_pred cCCceEEEEEecCcchHH-HH-HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 456778877753332221 22 2346677777764 4544433332 222334555565578999999988875 45566
Q ss_pred HHhhcCcCcccccCCcEEEec
Q 014455 184 NGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP 204 (424)
+-+... .+|+-.+-
T Consensus 100 ~~l~~~-------giPvV~vd 113 (330)
T PRK15395 100 EKARGQ-------DVPVVFFN 113 (330)
T ss_pred HHHHHC-------CCcEEEEc
Confidence 666543 57776663
No 224
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=52.10 E-value=82 Score=29.12 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=55.4
Q ss_pred EEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcCChhh-HHHHHHHhccCCCceEEEEcCCc-hHHHHHHHhhcCcC
Q 014455 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLERED 191 (424)
Q Consensus 115 ivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDG-Tl~evvngL~~~~~ 191 (424)
|+.|..+..- ...+.+-++...++.++++.+. ......+ -.+.++++...++|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~~-~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~-- 79 (257)
T PF13407_consen 3 VIVPSMDNPF-WQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA-- 79 (257)
T ss_dssp EEESSSSSHH-HHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT--
T ss_pred EEeCCCCCHH-HHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc--
Confidence 5666666543 2234467888888999998885 3333221 22445566567899999998887 467888887664
Q ss_pred cccccCCcEEEecCC
Q 014455 192 WNDAIKVPLGVVPAG 206 (424)
Q Consensus 192 ~~~~~~~plgiiP~G 206 (424)
.+|+-.+=.+
T Consensus 80 -----gIpvv~~d~~ 89 (257)
T PF13407_consen 80 -----GIPVVTVDSD 89 (257)
T ss_dssp -----TSEEEEESST
T ss_pred -----CceEEEEecc
Confidence 5777775444
No 225
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=52.01 E-value=65 Score=28.05 Aligned_cols=57 Identities=21% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhcc-CCCceEEEEcCCch-----HHHHHHHhh
Q 014455 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLL 187 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDGT-----l~evvngL~ 187 (424)
..++.+|++.|+++... ..+.++...+..+++.. .++|.||+.||=|. ..+++..+.
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~ 87 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLL 87 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHh
Confidence 46888999999876543 23444444444444322 27999999999663 444444443
No 226
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=51.80 E-value=1.5e+02 Score=29.46 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCC
Q 014455 87 LSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK 166 (424)
Q Consensus 87 ~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~ 166 (424)
+|..-..+-++-++..+ +.-+++.++|||..-+-... . ++++..++.+|+++.........+....++.+. .+
T Consensus 140 sD~~~v~q~i~lik~~~---Pnak~Igv~Y~p~E~ns~~l--~-eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~ 212 (322)
T COG2984 140 SDLLPVAQQIELIKALL---PNAKSIGVLYNPGEANSVSL--V-EELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GK 212 (322)
T ss_pred CCcchHHHHHHHHHHhC---CCCeeEEEEeCCCCcccHHH--H-HHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CC
Confidence 34333445555555554 45689999999987554432 3 689999999999987666666667666666664 45
Q ss_pred CceEEEEcCCchHHHHHHHhhcC
Q 014455 167 YDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 167 ~d~vV~vGGDGTl~evvngL~~~ 189 (424)
.|+|+ +==|-|++-..+.|+..
T Consensus 213 ~d~i~-~p~dn~i~s~~~~l~~~ 234 (322)
T COG2984 213 VDVIY-IPTDNLIVSAIESLLQV 234 (322)
T ss_pred CcEEE-EecchHHHHHHHHHHHH
Confidence 55554 56799999999998875
No 227
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=51.74 E-value=43 Score=33.56 Aligned_cols=68 Identities=21% Similarity=0.276 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-------hhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------LHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-------~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.|+.+++-.|.=-+-- .+ +.++..|++.+|.++++.-..+ .+|.+++++ ..+|.+|++|| |+.++
T Consensus 70 aKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~---~~fDs~vaiGG-GSa~D 141 (465)
T KOG3857|consen 70 AKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK---KNFDSFVAIGG-GSAHD 141 (465)
T ss_pred ccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh---cccceEEEEcC-cchhh
Confidence 4677777766443221 23 5788999999999998753332 356666665 57999999999 44554
Q ss_pred HHH
Q 014455 182 VVN 184 (424)
Q Consensus 182 vvn 184 (424)
...
T Consensus 142 taK 144 (465)
T KOG3857|consen 142 TAK 144 (465)
T ss_pred hHH
Confidence 433
No 228
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=51.64 E-value=1.1e+02 Score=28.29 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh-ccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~-~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+.......+.+.++ ...++|+||+.+.+... ..+..+... ++|+-.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 57788889999988887766543333444443 33579999998876442 334444332 5676665
No 229
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=51.61 E-value=91 Score=30.06 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
.+.++..+++.|+++.+..+.... .-.++.+.+...+.|+||+++-|.. +.+.+..+... .+|+..+
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~-------~iPvV~~ 85 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDE-------GIKVVAY 85 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC-------CCeEEEe
Confidence 356788888888877665443221 1224555555578999999998865 46777776554 5676665
No 230
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=50.94 E-value=99 Score=29.55 Aligned_cols=56 Identities=9% Similarity=-0.055 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEEEEcCCchH-HHHHHHh
Q 014455 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGL 186 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvngL 186 (424)
+.+...+++.|+.+.+..+. ......+..+.+...++|+||+.+.|... .+.+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH
Confidence 46777788889888776554 22333456666666799999998876432 3455443
No 231
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=50.64 E-value=88 Score=29.24 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+|+.|+..|-+-. ...+...|+++|+++.++..... ..+++|+||+.||-
T Consensus 1 ~~v~Vl~~~G~n~-------~~~~~~al~~~G~~~~~i~~~~~----------~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFPGTNC-------DRDTVYALRLLGVDAEIVWYEDG----------SLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCCCcCc-------HHHHHHHHHHCCCeEEEEecCCC----------CCCCCCEEEECCCC
Confidence 4788999884421 12345678889988776643321 13579999999985
No 232
>PRK12412 pyridoxal kinase; Reviewed
Probab=49.97 E-value=48 Score=31.70 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEec-CCChhhhhhhhccccCCCCCHHHHHH
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP-AGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP-~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
+.+.++.+...+...|++-||. |.-.+.++-+............++-... .|+|..|+-.+-...-...++.+|+.
T Consensus 157 ~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g~~l~eA~~ 234 (268)
T PRK12412 157 MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKGKPVKEAVK 234 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4444555544466677777775 4321222222221110000112222233 69999998776432222235555543
No 233
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=49.91 E-value=98 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHHHHHHHhcCCeEEEEE-cC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+++.++. ++ .+....+..+.+...+.|+||+.+.|-. ..++++.+..+ .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 466778888898876443 32 2222234444554568999999887754 35677777654 5666554
No 234
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=49.60 E-value=38 Score=37.70 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=60.2
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEcCC---hhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
..+++-|.|-..|=-+. ...-...+..+...-|- +.-|.+ ..+...+++.+...+.|.+|++|||||+.-+.
T Consensus 419 g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~ 495 (745)
T TIGR02478 419 GHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS---ELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALL 495 (745)
T ss_pred CCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc---ccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHH
Confidence 34677777766653222 11111356666555443 223333 23566777777778999999999999987554
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
. |.+..+.-....+|+-.||.==-||+.
T Consensus 496 ~-L~~~~~~~~~~~i~vvgIPkTIDNDi~ 523 (745)
T TIGR02478 496 Q-LEQAREKYPAFRIPMVVIPATISNNVP 523 (745)
T ss_pred H-HHHHHhhCCCCCccEEEecccccCCCC
Confidence 3 221100001136899999998889987
No 235
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=49.52 E-value=35 Score=30.37 Aligned_cols=91 Identities=19% Similarity=0.276 Sum_probs=57.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC--CchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG--DGTl~evvngL~ 187 (424)
+|.+|++--.-| +..++- +.+...|.+.|+++++..... + .+++..+||.||+..- -|=.|+.++..+
T Consensus 1 Mk~LIlYstr~G--qT~kIA-~~iA~~L~e~g~qvdi~dl~~------~-~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv 70 (175)
T COG4635 1 MKTLILYSTRDG--QTRKIA-EYIASHLRESGIQVDIQDLHA------V-EEPALEDYDAVVIGASIRYGHFHEAVQSFV 70 (175)
T ss_pred CceEEEEecCCC--cHHHHH-HHHHHHhhhcCCeeeeeehhh------h-hccChhhCceEEEecchhhhhhHHHHHHHH
Confidence 467788876555 444554 588899999999998764322 2 2356779999887653 466778877776
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhh
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.+. .+.....|.+++-. |-+|+.
T Consensus 71 ~k~-~e~L~~kP~A~f~v---nl~a~k 93 (175)
T COG4635 71 KKH-AEALSTKPSAFFSV---NLTARK 93 (175)
T ss_pred HHH-HHHHhcCCceEEEe---ehhhcc
Confidence 542 11223456666643 555554
No 236
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=49.40 E-value=26 Score=35.92 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=34.4
Q ss_pred hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcc-cccCCcEEEecCCC
Q 014455 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWN-DAIKVPLGVVPAGT 207 (424)
Q Consensus 152 ~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~-~~~~~plgiiP~GT 207 (424)
+++-.++.+.+. ..+|+||+.|||-|+..+-.-+-.+...- -..+..+++|-.-.
T Consensus 155 ~~~d~~~~~~~~-~~~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~~ 210 (399)
T PF05893_consen 155 PGGDEELEEALS-QQADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAEA 210 (399)
T ss_pred cCCchHHHHHHH-HHCCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCch
Confidence 344444444443 57899999999999999988443222111 12467777776543
No 237
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=49.34 E-value=1.9e+02 Score=28.28 Aligned_cols=78 Identities=14% Similarity=0.111 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHh--cCCeEEEEE--cCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQE--TTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~--ag~~~~v~~--T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
..+++.+|. +...-++. .. +.+...|++ .|+++.... .... .+...++.++...+.|.|++++..+..-.+
T Consensus 142 ~~k~v~i~~-~~~~~g~~--~~-~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~~~~~~~~~~ 217 (342)
T cd06329 142 DGKKVYLIN-QDYSWGQD--VA-AAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITGNWGNDLLLL 217 (342)
T ss_pred cCceEEEEe-CChHHHHH--HH-HHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHHHHcCCCEEEEcccCchHHHH
Confidence 356777665 33333332 23 578889998 887764322 2222 445556666666789999887755555677
Q ss_pred HHHhhcC
Q 014455 183 VNGLLER 189 (424)
Q Consensus 183 vngL~~~ 189 (424)
+..+...
T Consensus 218 ~~~~~~~ 224 (342)
T cd06329 218 VKQAADA 224 (342)
T ss_pred HHHHHHc
Confidence 7777665
No 238
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=49.15 E-value=49 Score=25.62 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+...+...|+.+|+.+++..... ......+.+...++..++++|.+
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~~--~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRNE--RPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC--CcccchhHHHhcCCCEEEEECCc
Confidence 33567788888999887754322 22233344455789999999954
No 239
>PRK09065 glutamine amidotransferase; Provisional
Probab=48.79 E-value=58 Score=30.71 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 128 ~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
.|.+.+...|...+++++++......+. -+..+||+||+.||=.+.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~~~~~dgvvi~Gg~~~~~ 68 (237)
T PRK09065 22 DFPHWIRVALGLAEQPVVVVRVFAGEPL------PAPDDFAGVIITGSWAMVT 68 (237)
T ss_pred CHHHHHHHHhccCCceEEEEeccCCCCC------CChhhcCEEEEeCCCcccC
Confidence 3556677788888888887665543221 1235799999999988754
No 240
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=48.75 E-value=1.6e+02 Score=28.70 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=50.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+.+.+|+ |.....--..++ +.+...+++.|+++.+..+... ..-.++.+.+...+.|+|++.+++-+- +.+.-|..
T Consensus 60 ~~i~vi~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~~~l~~ 136 (341)
T PRK10703 60 KSIGLLA-TSSEAPYFAEII-EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE-PLLAMLEE 136 (341)
T ss_pred CeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHh
Confidence 3455554 655433223333 5778888888988777766532 222344555656789999998876432 45555543
Q ss_pred CcCcccccCCcEEEec
Q 014455 189 REDWNDAIKVPLGVVP 204 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP 204 (424)
. .++|+-.+-
T Consensus 137 ~------~~iPvV~~d 146 (341)
T PRK10703 137 Y------RHIPMVVMD 146 (341)
T ss_pred c------CCCCEEEEe
Confidence 1 156776663
No 241
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=48.75 E-value=1.8e+02 Score=25.81 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.++-.+.--.+ + ..+..+| |+++..+.-....+.....+++..+++|+|| |+|+..+.++.
T Consensus 76 ~~~~Iavv~~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~G~~viV---Gg~~~~~~A~~ 141 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPG-----L-ESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAEGVDVIV---GGGVVCRLARK 141 (176)
T ss_dssp CTSEEEEEEESS-SCC-----H-HHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHTT--EEE---ESHHHHHHHHH
T ss_pred cCCcEEEEecccccHH-----H-HHHHHHh---CCceEEEEECCHHHHHHHHHHHHHcCCcEEE---CCHHHHHHHHH
Confidence 3467777766544322 2 4667777 5788888888899999999998888888877 44555555543
No 242
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=48.61 E-value=22 Score=28.87 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=23.3
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
.+.|.|..+++++...|+++|+..+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 57899999999999999999998874
No 243
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=48.57 E-value=1.4e+02 Score=28.83 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=22.0
Q ss_pred CCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 166 ~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
..|.+|+.|| +|+.|++. ..+|.-++|.
T Consensus 241 ~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 241 EADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 5789999999 99999764 2577777776
No 244
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=48.13 E-value=2.1e+02 Score=27.49 Aligned_cols=94 Identities=5% Similarity=-0.040 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccC
Q 014455 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLS 165 (424)
Q Consensus 88 ~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~ 165 (424)
+...+..+.+.+.+.+ ..+++.+|+...+.-+.. ..+.++..+++.|+++... ......+...+++++...
T Consensus 118 ~~~~~~~~~~~~~~~~----~~~~v~ii~~~~~~~~~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~ 190 (334)
T cd06347 118 DPFQGTVMAKFATENL----KAKKAAVLYDNSSDYSKG---LAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAK 190 (334)
T ss_pred cHHHHHHHHHHHHHhc----CCcEEEEEEeCCCchhHH---HHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhc
Confidence 3444444444443322 246788887432222222 2246777888888766322 223344566667777667
Q ss_pred CCceEEEEcCCchHHHHHHHhhc
Q 014455 166 KYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 166 ~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+.|.|++.+....+..++..+..
T Consensus 191 ~~d~i~~~~~~~~~~~~~~~~~~ 213 (334)
T cd06347 191 NPDVIFLPGYYTEVGLIAKQARE 213 (334)
T ss_pred CCCEEEEcCchhhHHHHHHHHHH
Confidence 88988887766666666665544
No 245
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=47.91 E-value=1.6e+02 Score=28.38 Aligned_cols=77 Identities=8% Similarity=0.033 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.++.+..+ .++. .. +.++..|++.|+++... ......+...++.++...+.|+|++++...-.-.+++.+
T Consensus 134 ~~~v~~l~~~~~-~g~~--~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~ 209 (336)
T cd06360 134 YKKVVTVAWDYA-FGYE--VV-EGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY 209 (336)
T ss_pred CCeEEEEeccch-hhHH--HH-HHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence 577888875443 3332 22 46788899999876432 223345556667777667899999876655556677777
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
...
T Consensus 210 ~~~ 212 (336)
T cd06360 210 DAA 212 (336)
T ss_pred HHc
Confidence 544
No 246
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=47.86 E-value=1.2e+02 Score=29.05 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCeEEEE-EcC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~-~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+. .+. .+....+..+.+...++|+||+.+.+-. +.+.+..+... .+|+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~v 87 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREA-------GIKVVTH 87 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHC-------CCeEEEE
Confidence 57788888899888765 333 2333345555555568999999987744 34556655443 5666555
No 247
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=47.26 E-value=78 Score=29.57 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=43.6
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+.... .-.++.+.+...++|+||+.+.+.. +.+.++-+.+. .+|+-.+
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA-------GIPVILV 86 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC-------CCCEEEE
Confidence 57888888899888776554322 2224556666678999999887754 35666666543 4665554
No 248
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=47.20 E-value=1.2e+02 Score=27.92 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
.+.++..+++.|+.+.+..+.+ +....+..+++...++|+||+++.+.+ ..++..+..
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~ 76 (259)
T cd01542 18 VKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEHREAIKK 76 (259)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhc
Confidence 3577888888999887776653 232345566666678999999987754 245555544
No 249
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=47.11 E-value=1.4e+02 Score=28.04 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|+++.+..+.. + .+..+.+...+.|+|++.+-|.+- +.++-+... ++|+-.+
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 85 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS--E-DSDSALVVSALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVV 85 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHhcCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEE
Confidence 578888999999988877765 2 234445555789999999877653 556665443 5677666
No 250
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=46.85 E-value=1.5e+02 Score=27.22 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+.+.++..+++.|+.+.+..++.. ....++.+.+...++|+|++.+.|..- +.++-+... .+|+-.+-
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~-------~ipvV~~~ 85 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKN-------GKPVVLVD 85 (267)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcC-------CCCEEEEc
Confidence 335788888888988876666542 222344556666789999999987653 335555432 56766653
No 251
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=46.40 E-value=2.1e+02 Score=27.88 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=56.5
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC----hhhHHHHHHHhccCCCceEE
Q 014455 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~----~~~a~~l~~~~~~~~~d~vV 171 (424)
..++.+.+... ..+++.+|+.... -++. .. +.++..+++.|+++.....-. ..+...+++++...+.|+|+
T Consensus 123 ~~a~~~~~~~~-~~~~v~ii~~~~~-~g~~--~~-~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi 197 (350)
T cd06366 123 NPAIAALLKKF-GWRRVATIYEDDD-YGSG--GL-PDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIV 197 (350)
T ss_pred HHHHHHHHHHC-CCcEEEEEEEcCc-ccch--hH-HHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEE
Confidence 33343444332 4578888774433 2222 22 467888999998875443222 24566667777666799999
Q ss_pred EEcCCchHHHHHHHhhcC
Q 014455 172 CVSGDGILVEVVNGLLER 189 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~ 189 (424)
+++.......++..+...
T Consensus 198 ~~~~~~~~~~~~~~a~~~ 215 (350)
T cd06366 198 VHFSPDLARRVFCEAYKL 215 (350)
T ss_pred EECChHHHHHHHHHHHHc
Confidence 999888888888887665
No 252
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=45.65 E-value=3.1e+02 Score=27.09 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|.+-.. -++. ..+.++..+++.|+++.... .....+....+.++...+.|+|++.+-......++..
T Consensus 139 ~~~kvaiv~~~~~-~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~ 214 (351)
T cd06334 139 KGKKIALVYHDSP-FGKE---PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKE 214 (351)
T ss_pred CCCeEEEEeCCCc-cchh---hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHH
Confidence 3578887765322 2322 22567888999998764332 2222455566666666789999887776667777777
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 215 ~~~~ 218 (351)
T cd06334 215 AKRV 218 (351)
T ss_pred HHHc
Confidence 7654
No 253
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=45.47 E-value=43 Score=28.35 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCc-----hHHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-----Tl~evvngL~~ 188 (424)
..+...|++.|.++... ..+.+....+..+++. +++|.||..||=| ...+++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-ERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 36788899999875432 2333343344444433 4699999999966 35566666543
No 254
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=45.45 E-value=1.8e+02 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.114 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHH-HhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~-~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
..+...+++.|+++.+..+.......+..+ .+...+.|+|++.+.|=. .+.++.|... .+|+-++
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPT-------ERPVVLV 84 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhc-------CCCEEEE
Confidence 578888888999888877765444344443 355567999999987633 3455555433 5666555
No 255
>PLN02285 methionyl-tRNA formyltransferase
Probab=45.39 E-value=60 Score=32.45 Aligned_cols=65 Identities=11% Similarity=0.059 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
..-+.||-||..-.++..+.....++.+..++|+.+.++ ..+...+. ++.+.+...++|.+|++|
T Consensus 36 ~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~~-~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 36 FEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGEE-DFLSALRELQPDLCITAA 101 (334)
T ss_pred CeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCCH-HHHHHHHhhCCCEEEhhH
Confidence 345778889876555555544456788888889985533 22322221 233444445799999886
No 256
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=45.32 E-value=1.5e+02 Score=27.27 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...++..|+.+.+..+... ....++.+.+...+.|+|++++-+-+ .+.++.+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~-------~ipvv~~ 84 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAA-------GIPVVEI 84 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhc-------CCCEEEE
Confidence 5677888888988877666432 22335566666678999999998765 4555655443 4666554
No 257
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.32 E-value=1e+02 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=39.8
Q ss_pred HHHHHHHHh--cCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLED--ANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~--ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+.+...+++ .++.+.+..+....+ -.++.+.+...+.|+||+.+.|.. ..+++..+.+. ++|+-.+-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~-------~ipvv~~~ 89 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA-------GIVVVAVD 89 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC-------CCeEEEec
Confidence 567788888 554444443432221 123444555568999999988764 46667666543 56766663
No 258
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=44.99 E-value=1e+02 Score=26.73 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=33.6
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
..+.++....+.|++++++.+.+.++..+...++. +++|+||+-
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~-~~~dgiIIN 72 (140)
T cd00466 29 IEALLRELAAELGVEVEFFQSNHEGELIDWIHEAR-DGADGIIIN 72 (140)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-ccCcEEEEc
Confidence 33455666666799999999999999998888874 467887753
No 259
>PRK12616 pyridoxal kinase; Reviewed
Probab=44.86 E-value=68 Score=30.71 Aligned_cols=26 Identities=15% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCChhhhhhhhccccCCCCCHHHHHH
Q 014455 205 AGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 205 ~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
.|||..|+-.+....-...++.+|+.
T Consensus 212 ~GaGD~fsaalaa~l~~g~~l~~Av~ 237 (270)
T PRK12616 212 HGAGCTFSAAVTAELAKGSEVKEAIY 237 (270)
T ss_pred CcHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 69999998877533222235555543
No 260
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=44.66 E-value=89 Score=25.58 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=54.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~ 188 (424)
++++++.. .|-+.....++++..+++.|+++++..+.-. ++.......++|.|++ |-+=- .-+=+..+..
T Consensus 2 kkILlvCg----~G~STSlla~k~k~~~~e~gi~~~i~a~~~~----e~~~~~~~~~~DvIll-~PQi~~~~~~i~~~~~ 72 (104)
T PRK09590 2 KKALIICA----AGMSSSMMAKKTTEYLKEQGKDIEVDAITAT----EGEKAIAAAEYDLYLV-SPQTKMYFKQFEEAGA 72 (104)
T ss_pred cEEEEECC----CchHHHHHHHHHHHHHHHCCCceEEEEecHH----HHHHhhccCCCCEEEE-ChHHHHHHHHHHHHhh
Confidence 56777654 3334446778999999999999887655432 2333333346885554 33321 1111222221
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHH
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVI 233 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~ 233 (424)
. .++|+.+||. .+++ .+|.+++..+..|.
T Consensus 73 ~------~~ipv~~I~~---~~Y~-------~~~~~~~~~~~~~~ 101 (104)
T PRK09590 73 K------VGKPVVQIPP---QAYI-------PIPMGIEKMAKLIL 101 (104)
T ss_pred h------cCCCEEEeCH---HHcC-------CCccCHHHHHHHHH
Confidence 1 3689999985 1111 34567766655553
No 261
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=44.62 E-value=89 Score=29.47 Aligned_cols=70 Identities=14% Similarity=0.179 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCC------CCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc---cCCCce-EEEEcCCc
Q 014455 108 RPKRLYIFVNPF------GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDG-IVCVSGDG 177 (424)
Q Consensus 108 r~~~~~vivNP~------sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~---~~~~d~-vV~vGGDG 177 (424)
+++++.+|||-. .....+.+ =.+.++..|+..|+++.+..=-...+..+..+++. ...+|. |++.=|-|
T Consensus 7 ~~~g~aLII~n~~f~~~~~~r~g~~~-D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG 85 (243)
T cd00032 7 KRRGLALIINNENFDKGLKDRDGTDV-DAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG 85 (243)
T ss_pred CCCCEEEEEechhcCCCCCCCCChHH-HHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC
Confidence 356666666542 11112222 23689999999998887665445455555554443 245664 44455555
Q ss_pred h
Q 014455 178 I 178 (424)
Q Consensus 178 T 178 (424)
.
T Consensus 86 ~ 86 (243)
T cd00032 86 E 86 (243)
T ss_pred C
Confidence 3
No 262
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=44.48 E-value=86 Score=32.33 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
....|.+.|.+.++... .+++.|++.+..|.+. ..+.++|++.|+++..+.
T Consensus 150 ~~~~Y~~~l~~~~~~~~-~~~lkVvvD~~nG~~~------~~~~~ll~~lg~~v~~in 200 (434)
T cd05802 150 ARGRYIEFLKSTFPKDL-LSGLKIVLDCANGAAY------KVAPEVFRELGAEVIVIN 200 (434)
T ss_pred hHHHHHHHHHHhcCccc-cCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEec
Confidence 34567888877765321 3578899999887653 245677888888776543
No 263
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=44.34 E-value=2.1e+02 Score=28.70 Aligned_cols=79 Identities=9% Similarity=0.194 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|+.-.. -++..-...+.+...++..|+.+....... ..+..++.+++...+ ++||+++..-.+..++..
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~ 213 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLA 213 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHH
Confidence 4577888874222 222110012577888999998887655432 236777888876555 888888777666666665
Q ss_pred hhc
Q 014455 186 LLE 188 (424)
Q Consensus 186 L~~ 188 (424)
..+
T Consensus 214 A~~ 216 (387)
T cd06386 214 AHR 216 (387)
T ss_pred HHH
Confidence 543
No 264
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=44.06 E-value=1.1e+02 Score=31.69 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-------------ChhhHHHH
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKEI 158 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-------------~~~~a~~l 158 (424)
...+.+.+.+.++. .. +++-|+++|..|.+. ..+.++|+..|+++...... .+.+..++
T Consensus 146 ~~~Y~~~l~~~i~~-~~-~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~i~~~~d~~F~~~~p~p~~~~~l~~l 217 (443)
T cd03089 146 LPDYIDRLLSDIKL-GK-RPLKVVVDAGNGAAG------PIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLEDL 217 (443)
T ss_pred HHHHHHHHHHhccc-cc-CCCeEEEECCCCchH------HHHHHHHHHCCCEEEEecCCCCCCCCCCCcCCCCHHHHHHH
Confidence 45677877777642 22 678999999888754 24567888888875443211 12233344
Q ss_pred HHHhccCCCceEEEEcCCc
Q 014455 159 VKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+...++|..++.=|||
T Consensus 218 ~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 218 IAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHcCCCEEEEecCCc
Confidence 4433334566666666655
No 265
>PRK09701 D-allose transporter subunit; Provisional
Probab=44.00 E-value=1.6e+02 Score=28.41 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC---hhhHHHHHHHhccCCCceEEEEcCCch-HHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evv 183 (424)
.-..+.||+ |.....--.. +.+.+...+++.|+++.+..+.. ..+..+..+.+...++|+||+.+.|.. ..+.+
T Consensus 23 ~~~~Igvi~-~~~~~~f~~~-~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l 100 (311)
T PRK09701 23 AAAEYAVVL-KTLSNPFWVD-MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV 100 (311)
T ss_pred cCCeEEEEe-CCCCCHHHHH-HHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHH
Confidence 334666666 3322211222 33577888888898887764432 223345555666678999999998863 33555
Q ss_pred HHhhcCcCcccccCCcEEEe
Q 014455 184 NGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgii 203 (424)
..+... ++|+..+
T Consensus 101 ~~~~~~-------giPvV~~ 113 (311)
T PRK09701 101 ARAWKK-------GIYLVNL 113 (311)
T ss_pred HHHHHC-------CCcEEEe
Confidence 555443 5676655
No 266
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=43.93 E-value=1.7e+02 Score=24.06 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=50.3
Q ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH
Q 014455 82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV 161 (424)
Q Consensus 82 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~ 161 (424)
+.|....|..|..-...|++..+......=..+.+|...-.... -.+.++..+++.++.+.+..-. ..++++.
T Consensus 28 l~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~D~----~~~~~~~ 100 (126)
T cd03012 28 LDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFER---DLANVKSAVLRYGITYPVANDN----DYATWRA 100 (126)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccccc---CHHHHHHHHHHcCCCCCEEECC----chHHHHH
Confidence 44444556666666666666655543322223334431111111 1247788888888887755422 2345566
Q ss_pred hccCCCceEEEEcCCchH
Q 014455 162 LDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 162 ~~~~~~d~vV~vGGDGTl 179 (424)
+........++++-||.+
T Consensus 101 ~~v~~~P~~~vid~~G~v 118 (126)
T cd03012 101 YGNQYWPALYLIDPTGNV 118 (126)
T ss_pred hCCCcCCeEEEECCCCcE
Confidence 655566788888888864
No 267
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=43.92 E-value=1.8e+02 Score=26.79 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh--hhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
+.++..+++.|+.+.+..++.. ....++.+.+...+.|+|++.+-+-.-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 69 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDA 69 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 5788889999999888877643 334456666666789999998865443
No 268
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=43.88 E-value=84 Score=29.99 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCC-eEEEEEcCChhhH--HHHHHHhccCCCceEEEEcCCc
Q 014455 130 LDDVKPLLEDANI-QFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 130 ~~~v~~~l~~ag~-~~~v~~T~~~~~a--~~l~~~~~~~~~d~vV~vGGDG 177 (424)
.+...+.|+..|+ +++++.......+ .++.+.+ ...|+|++.|||=
T Consensus 45 ~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l--~~ad~I~~~GGnq 93 (250)
T TIGR02069 45 GERYITIFSRLGVKEVKILDVREREDASDENAIALL--SNATGIFFTGGDQ 93 (250)
T ss_pred HHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHH--hhCCEEEEeCCCH
Confidence 3577888999998 4666555443332 2333333 4789999999993
No 269
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=43.85 E-value=25 Score=27.92 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
+.+.|..+++++++.|+++|++.+
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 568888899999999999998753
No 270
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=43.83 E-value=3.1e+02 Score=26.55 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+++.... -++. ..+.+...+++.|+++.-..+ ....+...+++++...+.|.|++++.+.-+..++..+
T Consensus 141 ~~~v~~v~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~ 216 (345)
T cd06338 141 PKKVAILYADDP-FSQD---VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQM 216 (345)
T ss_pred CceEEEEecCCc-ccHH---HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence 567777764332 2322 224677888889987653322 2234555667777667899999888888777888777
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
...
T Consensus 217 ~~~ 219 (345)
T cd06338 217 KEL 219 (345)
T ss_pred HHc
Confidence 654
No 271
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=43.75 E-value=1.4e+02 Score=23.44 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=40.1
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
..|+|+++|-|+.. ....+...|...|.++-+..+... ||.||+=.+=+.-....+.+
T Consensus 2 i~~~~~kgG~Gkst--~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~~~~~l 59 (104)
T cd02042 2 IAVANQKGGVGKTT--TAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLLTRNAL 59 (104)
T ss_pred EEEEeCCCCcCHHH--HHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHHHHHHH
Confidence 57899999999876 335788888888888877776654 78777665444433344444
No 272
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=43.45 E-value=2.1e+02 Score=27.43 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=49.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|..... -++. ..+.++..+++.|+++.....- ...+...+++++...+.|+|+..|.......++..
T Consensus 134 ~~~~v~~v~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~ 209 (334)
T cd06342 134 KAKKVAIIDDKTA-YGQG---LADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQ 209 (334)
T ss_pred CCCEEEEEeCCcc-hhhH---HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHH
Confidence 3578888875542 2332 2257788888889876544322 23455566677766788998877765556667776
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 210 ~~~~ 213 (334)
T cd06342 210 MRQL 213 (334)
T ss_pred HHHc
Confidence 6554
No 273
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=43.41 E-value=99 Score=32.08 Aligned_cols=51 Identities=10% Similarity=0.063 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
..+.+.+.|.+.+...-..+++-|+++|..|.+. ..+..+|++.|+++..+
T Consensus 155 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~------~~~~~ll~~lG~~v~~i 205 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAY------KVAPTVFSELGADVIVI 205 (446)
T ss_pred HHHHHHHHHHHhcCCccCCCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEE
Confidence 3455777776666421123578899999887642 24567788888876544
No 274
>PRK09267 flavodoxin FldA; Validated
Probab=43.17 E-value=74 Score=27.96 Aligned_cols=85 Identities=16% Similarity=0.150 Sum_probs=42.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL 186 (424)
++++||+-- ..|...++- +.|...|..+ +++++..+... . . +..+||.||++. ++|-....+..+
T Consensus 2 mki~IiY~S--~tGnT~~vA-~~Ia~~l~~~--~~~~~~~~~~~-~----~--~l~~~d~vi~g~pt~~~G~~~~~~~~f 69 (169)
T PRK09267 2 AKIGIFFGS--DTGNTEDIA-KMIQKKLGKD--VADVVDIAKAS-K----E--DFEAYDLLILGIPTWGYGELQCDWDDF 69 (169)
T ss_pred CeEEEEEEC--CCChHHHHH-HHHHHHhCCC--ceEEEEhhhCC-H----h--hHhhCCEEEEEecCcCCCCCCHHHHHH
Confidence 578999954 445555433 5677777532 44444333221 1 1 234788877662 456544433333
Q ss_pred hcCcCcccccCCcEEEecCC
Q 014455 187 LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~G 206 (424)
+..-........+++++-+|
T Consensus 70 l~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 70 LPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred HHHHhcCCCCCCEEEEEecC
Confidence 22100001125688888554
No 275
>PRK13566 anthranilate synthase; Provisional
Probab=43.04 E-value=1.2e+02 Score=33.77 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=40.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+.++++||=|-.+ +...+..+|+..|.++.++......+ +. +..++|+||+.||-|+..
T Consensus 525 ~g~~IlvID~~ds--------f~~~l~~~Lr~~G~~v~vv~~~~~~~---~~---~~~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 525 EGKRVLLVDHEDS--------FVHTLANYFRQTGAEVTTVRYGFAEE---ML---DRVNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCEEEEEECCCc--------hHHHHHHHHHHCCCEEEEEECCCChh---Hh---hhcCCCEEEECCCCCChh
Confidence 4567777776422 23468889999999888776654322 22 234799999999998754
No 276
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=42.49 E-value=70 Score=28.23 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=40.0
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEEEE
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
++.||.-..| ..... ++....|++.|++|++.+. ..|+...++++++...++++||+.
T Consensus 4 ~V~IIMGS~S----D~~~m-k~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 4 KVGIIMGSKS----DWDTM-KKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred eEEEEecCcc----hHHHH-HHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEec
Confidence 6777774433 33333 5788899999999987542 445667788888877778776643
No 277
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=42.42 E-value=1.5e+02 Score=32.86 Aligned_cols=56 Identities=11% Similarity=-0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+-+..+|+..|+++. ....-....++++.+...+.|+|++|+=|+|--|.+..+++
T Consensus 600 ~fv~~~l~~~GfeV~--~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~ 655 (714)
T PRK09426 600 KVIATAFADLGFDVD--IGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIE 655 (714)
T ss_pred HHHHHHHHhCCeeEe--cCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHH
Confidence 567899999998773 33222334466666666789999999999988776666654
No 278
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.32 E-value=2.3e+02 Score=27.81 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (424)
+.|+...+.+++.+... + +|+=..|.+++ ..+...|.+......++.|+.++++. .....+..+..++
T Consensus 9 ~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~----~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~ 84 (296)
T PRK14188 9 AFAADVRATVAAEVARLKAAHGVTPGLAVVLVGE----DPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIAR 84 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666667776665432 2 34333444443 33455677778888999999988763 3444556666666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
+.. ...|+|++- -..-.-.++++.+--..|
T Consensus 85 lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KD 118 (296)
T PRK14188 85 LNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKD 118 (296)
T ss_pred HhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 653 356777763 334445567777655544
No 279
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.03 E-value=2.3e+02 Score=27.78 Aligned_cols=78 Identities=15% Similarity=-0.057 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCc-hHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-Tl~evvn 184 (424)
..+++.+|+....- ++. .. +.++..|++.|+++.. .......+....+.++...+.|+|++++-.. ....+++
T Consensus 137 ~~~~v~il~~d~~~-g~~--~~-~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~ 212 (347)
T cd06336 137 GGKKVALLGPNDAY-GQP--WV-AAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIK 212 (347)
T ss_pred CCceEEEEccCCch-hHH--HH-HHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHH
Confidence 45788888754442 332 23 5678889989877632 2223345566667777667899998876665 7888888
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.+-..
T Consensus 213 ~~~~~ 217 (347)
T cd06336 213 QAREL 217 (347)
T ss_pred HHHHc
Confidence 88655
No 280
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.97 E-value=2.7e+02 Score=27.13 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHh
Q 014455 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (424)
+.++.+.+.+++.+... .+..++.+|.= |...+...|.+.-...+++.|++++++.- ..+.+..++.+++
T Consensus 10 ~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~v---g~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~L 86 (283)
T PRK14192 10 ALAKQIEEELSVRVEALKAKTGRTPILATILV---GDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEEL 86 (283)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45666777777765543 23334544431 33344556777778889999999876644 2344556677777
Q ss_pred ccC-CCceEEE
Q 014455 163 DLS-KYDGIVC 172 (424)
Q Consensus 163 ~~~-~~d~vV~ 172 (424)
..+ +.++|.+
T Consensus 87 n~d~~v~Gi~V 97 (283)
T PRK14192 87 NANPDVHGILL 97 (283)
T ss_pred hCCCCCCEEEE
Confidence 554 4666554
No 281
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.94 E-value=90 Score=28.80 Aligned_cols=80 Identities=11% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 98 KLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 98 ~~~~~~~~~-~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
.|.+.+... .+..++.+| |.+..-. . .+.+.+...|+.. |+++....+.. ..+..+.+ ..+|.|++.||
T Consensus 19 ~l~~~l~~~~~~~~~i~~I--ptAs~~~-~-~~~~~~~~a~~~l~G~~~~~~~~~~---~~~~~~~l--~~ad~I~l~GG 89 (212)
T cd03146 19 AIDDLLLSLTKARPKVLFV--PTASGDR-D-EYTARFYAAFESLRGVEVSHLHLFD---TEDPLDAL--LEADVIYVGGG 89 (212)
T ss_pred HHHHHHHHhccCCCeEEEE--CCCCCCH-H-HHHHHHHHHHhhccCcEEEEEeccC---cccHHHHH--hcCCEEEECCc
Confidence 344444433 234455544 4444322 2 2446788899999 88777655433 11222333 36788888885
Q ss_pred CchHHHHHHHhhc
Q 014455 176 DGILVEVVNGLLE 188 (424)
Q Consensus 176 DGTl~evvngL~~ 188 (424)
.....++.|.+
T Consensus 90 --~~~~~~~~l~~ 100 (212)
T cd03146 90 --NTFNLLAQWRE 100 (212)
T ss_pred --hHHHHHHHHHH
Confidence 44555555544
No 282
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=41.79 E-value=90 Score=26.19 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchH----HHHHHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL----VEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl----~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.++.+++..++.+.........-+.+|.+.+...++|.||+.-= |++ ..+.+.++++ .++|+-++|.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~-~~~~~~lgSva~~v~~~------a~~pVLvv~~ 139 (144)
T PRK15118 69 ALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHH-QDFWSKLMSSARQLINT------VHVDMLIVPL 139 (144)
T ss_pred HHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCc-ccHHHHHHHHHHHHHhh------CCCCEEEecC
Confidence 34455555676643222222233456666666668898877332 332 2344555554 3688888885
No 283
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=41.55 E-value=91 Score=24.19 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=37.6
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+|+....+..... .+...+...|..+|+.+.+.. .......-.+.+...++..++++|-+
T Consensus 3 ~Ii~~~~~~~~~~-~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 3 VIIPVGKKDEEII-EYAQELANKLRKAGIRVELDD--SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp EEEESSCSHHHHH-HHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred EEEEeCCCcHHHH-HHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHhhcCCeEEEEECch
Confidence 3455444422223 244688899999998877665 23333344455556788899999865
No 284
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=41.53 E-value=1.2e+02 Score=31.72 Aligned_cols=52 Identities=6% Similarity=-0.006 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
....+.+.|.+.++..-+.+++-|++++..|.+. ..+.++|++.|+++....
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~------~~~~~ll~~LG~~v~~l~ 219 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAV------ACAPEVFKALGAEVICLH 219 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEEe
Confidence 3456777777666421133578899999887653 245678888888775443
No 285
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=41.46 E-value=38 Score=30.11 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..+...|++.|.++.++......+ +....++|+||+.||.+...
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~------~~~~~~~dgvIl~Gg~~~~~ 55 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE------EIKLKNPKGIILSGGPSSVY 55 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh------hhcccCCCEEEECCCccccc
Confidence 357788888998887776654321 22346899999999987654
No 286
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=41.46 E-value=2.7e+02 Score=30.96 Aligned_cols=59 Identities=15% Similarity=0.261 Sum_probs=38.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.++++||=|- .+ +...+..+|++.|+++.+...... .++. +..++|.||+.||-|+..+
T Consensus 516 ~~~IlVID~g-ds-------~~~~l~~~L~~~G~~v~vv~~~~~---~~~~---~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 516 GRRILLVDHE-DS-------FVHTLANYLRQTGASVTTLRHSHA---EAAF---DERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred CCEEEEEECC-Ch-------hHHHHHHHHHHCCCeEEEEECCCC---hhhh---hhcCCCEEEEcCCCCCchh
Confidence 4566666542 11 224678889999988876654432 1222 2246999999999999764
No 287
>PRK09273 hypothetical protein; Provisional
Probab=41.37 E-value=70 Score=29.75 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=42.9
Q ss_pred EEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 115 ivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
++|-.|-..+-.-++ +.+...|+..|+++.=+=+ .++.-+..++..+.
T Consensus 5 li~e~sqa~kn~~i~-~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~----------------------- 60 (211)
T PRK09273 5 LINENSQAAKNAIIY-EALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLN----------------------- 60 (211)
T ss_pred eecccchhhhhHHHH-HHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHH-----------------------
Confidence 456666554444356 6899999999987643322 23333333333322
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
.. ....||+=||||.+++-+.+
T Consensus 61 -~g-------~~d~GIliCGTGiG~siAAN 82 (211)
T PRK09273 61 -SK-------AVDFVVTGCGTGQGAMLALN 82 (211)
T ss_pred -cC-------CCCEEEEEcCcHHHHHHHHh
Confidence 21 46678888899888887765
No 288
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.27 E-value=1.7e+02 Score=28.43 Aligned_cols=79 Identities=18% Similarity=0.050 Sum_probs=51.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|+.....-++. ..+.++..+++.|+++... ......+...++.++...+.|+|++.+.-+-...+++.
T Consensus 135 ~~~~v~~l~~~~~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~ 211 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVS---ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQ 211 (344)
T ss_pred CCeEEEEEEeCCchHHHH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHH
Confidence 457888887432222222 2357888899999876432 22234456667777777789998887766666778887
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 212 ~~~~ 215 (344)
T cd06348 212 LREL 215 (344)
T ss_pred HHHc
Confidence 7665
No 289
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=41.21 E-value=8.7 Score=40.85 Aligned_cols=48 Identities=25% Similarity=0.518 Sum_probs=34.5
Q ss_pred eEEEEcCCchHHHHHHHhhcCcC----cccccCCcEEE-ecCCCh-hhhhhhhc
Q 014455 169 GIVCVSGDGILVEVVNGLLERED----WNDAIKVPLGV-VPAGTG-NGMIKSLL 216 (424)
Q Consensus 169 ~vV~vGGDGTl~evvngL~~~~~----~~~~~~~plgi-iP~GTg-N~~Ar~l~ 216 (424)
+|-.=-|||.+|..+|-++--+. .+.-.+.|+|| +|+||| =+||...+
T Consensus 460 gVslrpgdGVIHswLNrmllpDtvgtGGDSHTRfpiGisFpAgSGlVAfAaatG 513 (852)
T COG1049 460 GVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATG 513 (852)
T ss_pred ceecCCCCccHHHHHHhccCCcceecCCcccccccccceecCCCchhhhhHhcC
Confidence 46666799999999999864320 11224789998 899999 56877764
No 290
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.16 E-value=3e+02 Score=26.91 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|+. ...-++. ..+.++..++++|+++.... .....+...++.++...+.|+|++.+..+..-.++..+
T Consensus 144 ~~~v~ii~~-~~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~ 219 (362)
T cd06343 144 NAKIAVLYQ-NDDFGKD---YLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKA 219 (362)
T ss_pred CceEEEEEe-ccHHHHH---HHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 467777763 3332332 23578888999998754322 22233445556666667899999888777777788887
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 220 ~~~ 222 (362)
T cd06343 220 AEL 222 (362)
T ss_pred HHc
Confidence 654
No 291
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.10 E-value=1.6e+02 Score=27.38 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHhc-----CCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDA-----NIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~a-----g~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++. ++++.+..+... ....++.+.+...+.|+|++.+.|.+ +.+.++.+.+. .+|+-.+
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~~ 91 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKA-------GIFVVVV 91 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEEE
Confidence 4566666665 455555544332 22334455565568999999998865 46777766543 6777776
Q ss_pred cCC
Q 014455 204 PAG 206 (424)
Q Consensus 204 P~G 206 (424)
-.+
T Consensus 92 d~~ 94 (274)
T cd06311 92 DRG 94 (274)
T ss_pred cCC
Confidence 544
No 292
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=40.99 E-value=73 Score=27.41 Aligned_cols=55 Identities=20% Similarity=0.293 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCch-----HHHHHHHh
Q 014455 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGL 186 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-----l~evvngL 186 (424)
..++..|++.|+++.... .+..+...+..+++. +++|.||+.||=|. ..+++..+
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 368888999998765433 334444344444442 47999999999774 34555544
No 293
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=40.86 E-value=2.8e+02 Score=26.64 Aligned_cols=68 Identities=10% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
+.+.+.|++ |.-.+.--..++ +.++..+++.|+.+.+..+.. .....++.+.+...+.|+||+++.+.
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l~-~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 126 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAELA-RGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTI 126 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 344566665 432221122233 467777888888877665543 22233445555557899999987543
No 294
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=40.85 E-value=1.4e+02 Score=26.36 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHh-ccCCCceEEEEcCCc-----hHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVL-DLSKYDGIVCVSGDG-----ILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~-~~~~~d~vV~vGGDG-----Tl~evvngL~~~ 189 (424)
..+..+|++.|+++.... ....+...+..+++ +.+++|.||+.||=| -..|++..++++
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~ 91 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDK 91 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCC
Confidence 367888999998765433 34444444444444 235799999999966 355666666655
No 295
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.76 E-value=2.3e+02 Score=27.76 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhhhhcC-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhcc-
Q 014455 90 DSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL- 164 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~- 164 (424)
+.++...+.+++.+.... +|+=..|.++ ...+...|.+......++.|++++++.- ....+..+..+++..
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 10 PAAEAVYAELRARLAKLPFVPHLRVVRLG----EDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456777777777776654 4443344444 3445556777788889999999887643 234445566666653
Q ss_pred CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 165 SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 165 ~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
+..|+|++- -..-.-+++++.+--..|
T Consensus 86 ~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 115 (287)
T PRK14173 86 PEVDGILVQLPLPPHIDFQRVLEAIDPLKD 115 (287)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 346777653 234445566666654443
No 296
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=40.63 E-value=1.1e+02 Score=26.80 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
.+.++...+..|++++++.+.+.++..+...++. +++|+||+
T Consensus 32 ~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~-~~~dgiiI 73 (146)
T PRK05395 32 EALLEEEAAELGVELEFFQSNHEGELIDRIHEAR-DGADGIII 73 (146)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-cCCcEEEE
Confidence 3455555566789999999999999988888774 46888775
No 297
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=40.61 E-value=2.2e+02 Score=28.28 Aligned_cols=89 Identities=9% Similarity=0.054 Sum_probs=53.9
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCC--hhhHHHHHHHhccCCCceEE
Q 014455 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 96 ~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~vV 171 (424)
..++-+.+.... .+++.++.+-..+-+... . +.+...+++.|+++.... ... ..+...+.+++...+ |+||
T Consensus 125 ~~a~~~~l~~~~-~~~v~ii~~~~~~~g~~~--~-~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~-~vii 199 (389)
T cd06352 125 GEAVLALLRWFN-WHVAVVVYSDDSENCFFT--L-EALEAALREFNLTVSHVVFMEDNSGAEDLLEILQDIKRRS-RIII 199 (389)
T ss_pred HHHHHHHHHHcC-ceEEEEEEecCCccHHHH--H-HHHHHHHHhcCCeEEEEEEecCCccchhHHHHHHHhhhcc-eEEE
Confidence 334444443332 567777776665322222 2 467778888888765332 222 344555666666555 8888
Q ss_pred EEcCCchHHHHHHHhhcC
Q 014455 172 CVSGDGILVEVVNGLLER 189 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~ 189 (424)
+++.......++..+...
T Consensus 200 ~~~~~~~~~~~l~q~~~~ 217 (389)
T cd06352 200 MCGSSEDVRELLLAAHDL 217 (389)
T ss_pred EECCHHHHHHHHHHHHHc
Confidence 888877788888877664
No 298
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=40.55 E-value=1.3e+02 Score=31.13 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
....|.+.|++.+...-+.+.+-|++.+..|.+. ..+..+|++.|+++..+
T Consensus 152 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~~------~~~~~ll~~lg~~v~~i 202 (443)
T TIGR01455 152 AVGRYIEFLKSTLPRGLTLSGLKVVLDCANGAAY------KVAPHVFRELGAEVIAI 202 (443)
T ss_pred HHHHHHHHHHHHhhcccccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEE
Confidence 3456778887776522233578899999887643 23456788888876443
No 299
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=40.42 E-value=1.2e+02 Score=28.02 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=40.0
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCch
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
.+++ |.....--.. +...++..+++.|+++.+..+.+.. ...++.+.+...+.|+|++.+++-+
T Consensus 3 ~~v~-~~~~~~~~~~-~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 67 (267)
T cd06284 3 LVLV-PDIANPFFSE-ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLP 67 (267)
T ss_pred EEEE-CCCCCccHHH-HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3444 5444322232 3468888899999988776665332 1334555665678999999887644
No 300
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=40.31 E-value=2.2e+02 Score=24.50 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=11.7
Q ss_pred EcCCchHHHHHHHhhc
Q 014455 173 VSGDGILVEVVNGLLE 188 (424)
Q Consensus 173 vGGDGTl~evvngL~~ 188 (424)
+=|.=++.|+++.|..
T Consensus 116 i~G~~~~~ell~~L~~ 131 (136)
T cd02990 116 IQGNTGVDELLMRLIE 131 (136)
T ss_pred EECCCCHHHHHHHHHH
Confidence 3477788888888864
No 301
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=40.24 E-value=1.2e+02 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
|...+...|++.|+.++++..... +..++ ....+|.||+.||.|..++
T Consensus 11 ft~~~~~~l~~~g~~~~~~~~~~~-~~~~~----~~~~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 11 FTYNLYQYFCELGAQVKVVRNDEI-DIDGI----EALNPTHLVISPGPCTPNE 58 (193)
T ss_pred cHHHHHHHHHHCCCcEEEEECCCC-CHHHH----hhCCCCEEEEeCCCCChHH
Confidence 445678889999999888765432 23222 1235899999999998875
No 302
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=40.13 E-value=3.7e+02 Score=26.80 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=48.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|+.... -++. +.+.+++.+++.|.++... ......+....+.++...+.|+|++.|....+-.++..
T Consensus 160 ~~k~va~i~~d~~-~g~~---~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~ 235 (369)
T PRK15404 160 KPKRIAVLHDKQQ-YGEG---LARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQ 235 (369)
T ss_pred CCCEEEEEeCCCc-hhHH---HHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHH
Confidence 3578888876543 2222 2357788899999886432 22223355556666666789988876655556666666
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 236 ~~~~ 239 (369)
T PRK15404 236 AREA 239 (369)
T ss_pred HHHC
Confidence 6544
No 303
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=40.08 E-value=1.8e+02 Score=26.98 Aligned_cols=66 Identities=9% Similarity=0.203 Sum_probs=41.6
Q ss_pred HHHHHHHHhc-CCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~a-g~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++. |+.+.+..+.. ...-.+..+.+...+.|+||+.+.+-. ..+.+..+... ++|+-.+
T Consensus 19 ~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 87 (270)
T cd06308 19 DEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRA-------GIPVILL 87 (270)
T ss_pred HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHC-------CCCEEEe
Confidence 5677777775 78776655432 222334455555568999999988743 35566666443 6777666
No 304
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=39.94 E-value=1.1e+02 Score=30.61 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=35.3
Q ss_pred hcCCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHh---cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 105 SFGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 105 ~~~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~---ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
...+||=...=+|||+|.+-- .... +.|.|..++ .|+++. .|--|-.+-......+||+||++
T Consensus 199 gi~~PrIaV~gLNPHAGE~G~~G~EE~-~iI~PAI~~~~~~G~~v~-----GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK00232 199 GIAEPRIAVCGLNPHAGEGGHFGREEI-DIIIPALEELRAEGINLV-----GPLPADTLFQPAYLGDADAVLAM 266 (332)
T ss_pred CCCCCcEEEEeeCCCCCCCCCCCHHHH-HHHHHHHHHHHhCCCCcC-----CCCCchhhccccccCCCCEEEEC
Confidence 445676555557999997432 2111 345555544 465542 34444444444445689999975
No 305
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=39.73 E-value=1.2e+02 Score=26.40 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (424)
+++.++..|++.|+++.-+= +.++..+..+++.+... ....||
T Consensus 13 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~-------------------------------~~~~GI 61 (143)
T TIGR01120 13 LKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGG-------------------------------EVDGGI 61 (143)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCC-------------------------------CCceEE
Confidence 44688999999998764332 24555555555554321 356788
Q ss_pred ecCCChhhhhhhhc
Q 014455 203 VPAGTGNGMIKSLL 216 (424)
Q Consensus 203 iP~GTgN~~Ar~l~ 216 (424)
+=||||-+++-+.+
T Consensus 62 liCGtGiG~siaAN 75 (143)
T TIGR01120 62 LICGTGIGMSIAAN 75 (143)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888887777664
No 306
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=39.70 E-value=1.7e+02 Score=29.25 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=56.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-------hhHHHHHHHhccCCCceEEEEcC----
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------LHAKEIVKVLDLSKYDGIVCVSG---- 175 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-------~~a~~l~~~~~~~~~d~vV~vGG---- 175 (424)
++-+|+++.+---|=++.+ +| +++...|+ ++++.-+---.| ..|.+++++ ++.|.|++|||
T Consensus 27 ~~~~kVLi~YGGGSIKrnG--vy-dqV~~~Lk--g~~~~E~~GVEPNP~~~Tv~kaV~i~ke---e~idflLAVGGGSVi 98 (384)
T COG1979 27 PKDAKVLIVYGGGSIKKNG--VY-DQVVEALK--GIEVIEFGGVEPNPRLETLMKAVEICKE---ENIDFLLAVGGGSVI 98 (384)
T ss_pred cccCeEEEEecCccccccc--hH-HHHHHHhc--CceEEEecCCCCCchHHHHHHHHHHHHH---cCceEEEEecCcchh
Confidence 4558899998654444443 57 68888898 555432211112 234556665 68999999999
Q ss_pred CchHHHHHHHhhcCcCcccc--cCCcEEEecCCChhhhhh
Q 014455 176 DGILVEVVNGLLEREDWNDA--IKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 176 DGTl~evvngL~~~~~~~~~--~~~plgiiP~GTgN~~Ar 213 (424)
|||=.-.+-..+..+.|+.. ....--.+|.||-=.++.
T Consensus 99 D~tK~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~VLTLpA 138 (384)
T COG1979 99 DGTKFIAAAAKYDGDPWDILTKKHKIKDALPIGTVLTLPA 138 (384)
T ss_pred hhHHHHHhhcccCCChHHHHhcCCccccccccceEEEccc
Confidence 66655455555555445321 112334455555444433
No 307
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=39.53 E-value=1e+02 Score=28.98 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
+.+...+++.|+++.+..+..+.+..+..+.+...+.|+||+.+-
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 577888888998888776655554556666666678999999864
No 308
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=39.46 E-value=1.5e+02 Score=30.81 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-------------ChhhHHH
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKE 157 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-------------~~~~a~~ 157 (424)
..+.+.+.|.+.++. .+-+.+.|++.|..|.+.. .+..+|+..|+++.....+ .+.+..+
T Consensus 145 ~~~~Y~~~l~~~i~~-~~i~~lkVvvd~~~Ga~~~------~~~~ll~~lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~ 217 (445)
T PRK09542 145 VLADYAAFLRSLVDL-SGIRPLKVAVDAGNGMGGH------TVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVD 217 (445)
T ss_pred hHHHHHHHHHHhccc-ccCCCCEEEEECCCCchhH------HHHHHHHhCCCEEEEEecCcCCCCCCCCcCCCCHHHHHH
Confidence 345677777766642 1124689999998886542 3456777777765433211 1233334
Q ss_pred HHHHhccCCCceEEEEcCCc
Q 014455 158 IVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 158 l~~~~~~~~~d~vV~vGGDG 177 (424)
+.+.+...++|..++.-|||
T Consensus 218 l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 218 LQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 44444344566666655555
No 309
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.13 E-value=2.2e+02 Score=26.35 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+.++..++..|+++.+..+..... ..++.+.+...++|+||+.+.+.. ++++.+...
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~ 79 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKEL 79 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhc
Confidence 577888888998887766654332 223344454568999999987653 456666543
No 310
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=39.03 E-value=2.7e+02 Score=25.67 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...++..|+++.+..+.... ...++.+.+...++|+|++.+.+-.-. .+.-+... ++|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~~~~~~~-------~ipvV~~ 84 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDD-PYYLCQKA-------GLPVVAL 84 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-HHHHHHhc-------CCCEEEe
Confidence 57778888889888877675422 223555666667899999998864322 24444433 5666555
No 311
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=39.00 E-value=3.6e+02 Score=25.89 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=46.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|.... ..++ ... +.++..+++.|+++... ......+....+.++...+.|+|++.+-+.....++..+
T Consensus 136 ~~~v~~l~~~~-~~~~--~~~-~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~ 211 (336)
T cd06326 136 LKRIAVFYQDD-AFGK--DGL-AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRAL 211 (336)
T ss_pred CceEEEEEecC-cchH--HHH-HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 57887775432 2222 223 56788888888765332 222224555666666555688777766444567788888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 212 ~~~ 214 (336)
T cd06326 212 RKA 214 (336)
T ss_pred Hhc
Confidence 665
No 312
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=38.92 E-value=3.2e+02 Score=25.29 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+..+++.++..+.... +.... +.++..+++.|+++.........+..+.++++. .+.|+|+ +.+|.+...++..+
T Consensus 129 ~g~~~i~~l~~~~~~~--~~~r~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~dai~-~~~d~~a~~~~~~~ 203 (281)
T cd06325 129 PDAKTVGVLYNPSEAN--SVVQV-KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLA-GKVDAIY-VPTDNTVASAMEAV 203 (281)
T ss_pred CCCcEEEEEeCCCCcc--HHHHH-HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhc-ccCCEEE-EcCchhHHhHHHHH
Confidence 3567888887655422 22223 467778888888754322233444555666654 3456554 67898888888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 204 ~~~ 206 (281)
T cd06325 204 VKV 206 (281)
T ss_pred HHH
Confidence 654
No 313
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.80 E-value=3.5e+02 Score=26.47 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHh
Q 014455 90 DSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~---~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (424)
+.++.+.+.+++.+... + +|+=..|.++. ..+...|.+......++.|++++.+.- ....+..+..+++
T Consensus 10 ~va~~i~~~lk~~i~~l~~~g~~p~Laii~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (285)
T PRK14189 10 ALSKQLRAEAAQRAAALTARGHQPGLAVILVGD----NPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDEL 85 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC----CchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666777777765543 2 34333444443 335556878888899999999987653 2345566666666
Q ss_pred cc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 163 DL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 163 ~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
.. ...|+|++- -..-.-.++++.+--..|
T Consensus 86 N~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KD 118 (285)
T PRK14189 86 NRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKD 118 (285)
T ss_pred cCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccC
Confidence 53 346677653 233444556666655444
No 314
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=38.77 E-value=71 Score=27.75 Aligned_cols=15 Identities=27% Similarity=0.435 Sum_probs=12.3
Q ss_pred CCCceEEEEcCCchH
Q 014455 165 SKYDGIVCVSGDGIL 179 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl 179 (424)
..||.|++.||.+..
T Consensus 59 ~~~D~vvv~Gg~~~~ 73 (166)
T TIGR01382 59 EEYDALVIPGGRAPE 73 (166)
T ss_pred HHCcEEEECCCCCHH
Confidence 369999999998843
No 315
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=38.66 E-value=2.8e+02 Score=26.82 Aligned_cols=86 Identities=6% Similarity=0.114 Sum_probs=49.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.+++...+... -..++ +.+...+++.|+.+.+..+.+. ....+..+.+...+.|+||+++-+.. .+.+.-|
T Consensus 62 ~~~~Igvi~~~~~~~~-~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l 138 (331)
T PRK14987 62 TSRAIGVLLPSLTNQV-FAEVL-RGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT-PRTLKMI 138 (331)
T ss_pred CCCEEEEEeCCCcchh-HHHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHH
Confidence 4456677764322211 12233 4678888888988776655432 22234445555578999999875533 3555555
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... ++|+-.+
T Consensus 139 ~~~-------~iPvV~~ 148 (331)
T PRK14987 139 EVA-------GIPVVEL 148 (331)
T ss_pred HhC-------CCCEEEE
Confidence 443 5676654
No 316
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=38.65 E-value=1.3e+02 Score=31.01 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~-~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
....+.+.|.+.++.. -+.+.+.|+++|..|.+. ..+.++|++.|+++..+
T Consensus 147 ~~~~Y~~~l~~~i~~~~i~~~~lkIvvd~~~G~~~------~~~~~ll~~lG~~v~~i 198 (441)
T cd05805 147 FVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAG------IVLPGLLSRLGCDVVIL 198 (441)
T ss_pred HHHHHHHHHHHHhCHHHHhhcCCeEEEECCCchHH------HHHHHHHHHcCCEEEEE
Confidence 3456777776655321 123578899999887653 24567888888877644
No 317
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=38.63 E-value=1.4e+02 Score=30.83 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC------------hhhHHHH
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------------QLHAKEI 158 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~------------~~~a~~l 158 (424)
....+.+.+.+.++.. +.+.+-|++.+..|.+. ..+.++|+..|+++..+..+. +.+..++
T Consensus 145 ~~~~Y~~~l~~~~~~~-~~~~lkIvid~~~G~~~------~~~~~~l~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l 217 (439)
T cd03087 145 AIDEYIEAILDKVDID-GGKGLKVVVDCGNGAGS------LTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSEL 217 (439)
T ss_pred cHHHHHHHHHHhcCcc-cCCCCEEEEECCCCchH------HHHHHHHHHcCCEEEEECCcCCCCCCCCCCCCCHHHHHHH
Confidence 3455777776665421 13578899999888654 245677888888765543211 1233344
Q ss_pred HHHhccCCCceEEEEcCCc
Q 014455 159 VKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+...+.|..++.-|||
T Consensus 218 ~~~v~~~~adlgia~D~Dg 236 (439)
T cd03087 218 MELVRATGADLGIAHDGDA 236 (439)
T ss_pred HHHHHhcCCCEEEEEcCCC
Confidence 4443334566666655555
No 318
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=38.42 E-value=2.4e+02 Score=26.52 Aligned_cols=91 Identities=13% Similarity=0.049 Sum_probs=59.8
Q ss_pred CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH------------hccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 121 G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
|.|+.. . +++..+++ +|-.++|+-.+-..+..++++. -+..+++.|+++-+|--+|+-+-....
T Consensus 32 GGG~VA--~-RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~ 107 (223)
T PRK05562 32 GGGKAA--F-IKGKTFLK-KGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCD 107 (223)
T ss_pred CCCHHH--H-HHHHHHHh-CCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHH
Confidence 555533 2 46666555 7888888877766666555531 124578899999999999999888875
Q ss_pred CcC-c-------cc----------ccCCcEEEecCCChhhhhhhh
Q 014455 189 RED-W-------ND----------AIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 189 ~~~-~-------~~----------~~~~plgiiP~GTgN~~Ar~l 215 (424)
... + +. ...+.|+|--.|..=.+|+.+
T Consensus 108 ~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~l 152 (223)
T PRK05562 108 RLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFI 152 (223)
T ss_pred HcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHH
Confidence 421 1 00 013557777777777777776
No 319
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.33 E-value=44 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.541 Sum_probs=23.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcC
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFG 107 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 107 (424)
.++.|...+.++.+.|+++|+......+
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999988765443
No 320
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=38.19 E-value=1.2e+02 Score=27.36 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=36.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-------hHHH-----HHHHhccCCCceEEEEcCC
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------HAKE-----IVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-------~a~~-----l~~~~~~~~~d~vV~vGGD 176 (424)
.||++|++.|..-. .. + -....+|+++++++++...+..+ .... -..++..+.+|.|++.||.
T Consensus 2 ~~~~~il~~~g~~~---~e-~-~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEE---TE-A-VTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcch---hh-H-hHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCC
Confidence 46788888875522 21 2 14566788888877664432210 0000 1112222479999999996
Q ss_pred ch
Q 014455 177 GI 178 (424)
Q Consensus 177 GT 178 (424)
+.
T Consensus 77 ~~ 78 (196)
T PRK11574 77 KG 78 (196)
T ss_pred ch
Confidence 53
No 321
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=38.00 E-value=79 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.104 Sum_probs=7.4
Q ss_pred HHHHHHHhcC-CeEEEE
Q 014455 132 DVKPLLEDAN-IQFTVQ 147 (424)
Q Consensus 132 ~v~~~l~~ag-~~~~v~ 147 (424)
.+...|+++| .+++++
T Consensus 27 ~lAa~L~~~G~~~V~ii 43 (497)
T TIGR02026 27 YIGGALLDAGYHDVTFL 43 (497)
T ss_pred HHHHHHHhcCCcceEEe
Confidence 4444455555 344443
No 322
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=37.91 E-value=1.2e+02 Score=26.64 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
++.++...+..|++++++.+.+.++..+...++. +++|+||+
T Consensus 32 ~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~-~~~dgiII 73 (146)
T PRK13015 32 EALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR-GDVAGIVI 73 (146)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-hcCCEEEE
Confidence 3455566666789999999999999988888763 46777774
No 323
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=37.83 E-value=65 Score=31.03 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=35.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
+|+.||+-|-+..- ......|+++|+++.++.+.... +. ....++||+||+.||
T Consensus 4 ~kvaVl~~pG~n~d-------~e~~~Al~~aG~~v~~v~~~~~~---~~--~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCE-------DETVKAFRRLGVEPEYVHINDLA---AE--RKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCH-------HHHHHHHHHCCCcEEEEeecccc---cc--ccchhhCCEEEECCC
Confidence 58999998855421 24567888899988776554321 11 112368999999999
No 324
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=37.71 E-value=1.2e+02 Score=27.20 Aligned_cols=67 Identities=16% Similarity=0.100 Sum_probs=40.9
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+|-+.++|- .+++.|+..|+..|+++.-+-| .+|.-|..+++.+.
T Consensus 4 ~igsDhaG~-----~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~------------------------ 54 (171)
T PRK12615 4 AIGCDHIVT-----NEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVV------------------------ 54 (171)
T ss_pred EEEeCchhH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHH------------------------
Confidence 354555553 2446899999999987754333 34444444444432
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
.. ....||+=+|||.+++-..+
T Consensus 55 ~g-------~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 55 NG-------QADLGVCICGTGVGINNAVN 76 (171)
T ss_pred cC-------CCCEEEEEcCCcHHHHHHHh
Confidence 21 34578888888888777664
No 325
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=37.65 E-value=1.7e+02 Score=27.52 Aligned_cols=62 Identities=11% Similarity=0.185 Sum_probs=37.1
Q ss_pred chHHHHHHHHHhcCCeEEEEEcCCh-------hhHHHHHHHhcc-CCCceEEEEcCCchHHHHHHHhhcC
Q 014455 128 IFLDDVKPLLEDANIQFTVQETTQQ-------LHAKEIVKVLDL-SKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 128 ~~~~~v~~~l~~ag~~~~v~~T~~~-------~~a~~l~~~~~~-~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
.|.+++..+.+..++.+.+..++.. +...+...+... ...+.|.+||-++.+..+.+.|...
T Consensus 143 ~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~~~~~vyicGp~~mv~~~~~~L~~~ 212 (253)
T cd06221 143 LFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDPDNTVAIVCGPPIMMRFVAKELLKL 212 (253)
T ss_pred chHHHHHHHHhcCCeEEEEEeCCCCCCccCCccccchhHHhcCCCcCCcEEEEECCHHHHHHHHHHHHHc
Confidence 4556677665544455555554322 112223333221 1456799999999999999999765
No 326
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=37.48 E-value=17 Score=27.48 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=22.4
Q ss_pred EEEcCChhhHHHHHHHhccCCCc-eEEEEcCCchH
Q 014455 146 VQETTQQLHAKEIVKVLDLSKYD-GIVCVSGDGIL 179 (424)
Q Consensus 146 v~~T~~~~~a~~l~~~~~~~~~d-~vV~vGGDGTl 179 (424)
+...+.||.|.-+++.++...++ .+-+++||-|+
T Consensus 16 vvikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTi 50 (70)
T PF02863_consen 16 VVIKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTI 50 (70)
T ss_dssp EEEEESTTCHHHHHHHHHHHCGTTEEEEEEESSEE
T ss_pred EEEEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEE
Confidence 34445688888888777654444 45577888774
No 327
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=37.42 E-value=1e+02 Score=26.91 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=27.5
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~ 153 (424)
..|.|+++|-||.. ....+...|...|..+-++.+...+
T Consensus 2 i~v~s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKST--VAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhH--HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 46889999988875 2346777888888877776554333
No 328
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=37.40 E-value=1.4e+02 Score=30.94 Aligned_cols=50 Identities=12% Similarity=0.010 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
...+.+.+.+.++..-+.+++-|++.+..|.+. ..+.++|+..|+++..+
T Consensus 157 ~~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~~------~~~~~ll~~lG~~v~~i 206 (448)
T PRK14315 157 HGRYIEFAKRTLPRDLRLDGLRVVVDCANGAAY------KVAPEALWELGAEVITI 206 (448)
T ss_pred HHHHHHHHHHhcccccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEe
Confidence 455777777766522234578899999887543 24567888888876543
No 329
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=37.34 E-value=2.7e+02 Score=25.61 Aligned_cols=69 Identities=9% Similarity=0.129 Sum_probs=39.6
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
.|++ |.....-...++ +.++..+++.|+.+.+..+.. + .+..+.+...++|+||+.+.+-. .+.++-+.
T Consensus 3 gvv~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~--~-~~~~~~l~~~~vdgii~~~~~~~-~~~~~~~~ 71 (261)
T cd06272 3 GLIW-PSVSRVALTELV-TGINQAISKNGYNMNVSITPS--L-AEAEDLFKENRFDGVIIFGESAS-DVEYLYKI 71 (261)
T ss_pred EEEe-cCCCchhHHHHH-HHHHHHHHHcCCEEEEEeccc--H-HHHHHHHHHcCcCEEEEeCCCCC-hHHHHHHH
Confidence 3444 544332223333 577888888898887776652 2 23344454468999999876532 23344443
No 330
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=37.15 E-value=86 Score=22.43 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH------HHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev------vngL~~~~~~~~~~~~plgiiP~ 205 (424)
.....++..++.+++.......... .....++|.||+.||..+.... +.-+.+.- ....++.-+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~ 87 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA----AAGKPVLGICL 87 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH----HcCCEEEEEec
Confidence 4566777777777766554433222 2234689999999999988554 33333221 12456666666
Q ss_pred CC
Q 014455 206 GT 207 (424)
Q Consensus 206 GT 207 (424)
|+
T Consensus 88 g~ 89 (92)
T cd03128 88 GA 89 (92)
T ss_pred cc
Confidence 54
No 331
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=37.13 E-value=54 Score=35.55 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=58.9
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeE-E--EEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF-T--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~-~--v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
-.+++-|.|-..|=-+. ..+-.+.+..+....|..+ - -.....+.+-.++.+.+..-+.|.+|++|||||...+.
T Consensus 111 ~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~ 190 (610)
T PLN03028 111 NSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAA 190 (610)
T ss_pred CcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 35788888766654222 2222345666666655421 1 01112233445555666666889999999999987652
Q ss_pred --HHhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 184 --NGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 184 --ngL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
...+... ..++++--||.==-||+.
T Consensus 191 ~Lae~~~~~----~~~i~VIGIPKTIDNDL~ 217 (610)
T PLN03028 191 QLAETFAEA----KCKTKVVGVPVTLNGDLK 217 (610)
T ss_pred HHHHHHHHc----CCCceEEEeceeeeCCCC
Confidence 2222211 136888888987789987
No 332
>PRK10116 universal stress protein UspC; Provisional
Probab=37.02 E-value=1.5e+02 Score=24.67 Aligned_cols=66 Identities=15% Similarity=0.264 Sum_probs=35.0
Q ss_pred HHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE-cCCchHHHHH---HHhhcCcCcccccCCcEEEecC
Q 014455 134 KPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV-SGDGILVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 134 ~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v-GGDGTl~evv---ngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.+....+++..........-+..+.+.+...++|.||+. -|.+.+..+. +.++.+ .++|+-++|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~------~~~pVLvv~~ 139 (142)
T PRK10116 70 DKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIAS------SEVDVLLVPL 139 (142)
T ss_pred HHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhc------CCCCEEEEeC
Confidence 3333445654432222232334556666655688887762 2334455543 455554 3788888884
No 333
>PRK00536 speE spermidine synthase; Provisional
Probab=36.98 E-value=20 Score=34.52 Aligned_cols=19 Identities=5% Similarity=-0.038 Sum_probs=14.0
Q ss_pred CCceEEEEcCCc-hHHHHHH
Q 014455 166 KYDGIVCVSGDG-ILVEVVN 184 (424)
Q Consensus 166 ~~d~vV~vGGDG-Tl~evvn 184 (424)
.-.++|+.|||| |+.||+.
T Consensus 73 pk~VLIiGGGDGg~~REvLk 92 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFK 92 (262)
T ss_pred CCeEEEEcCCchHHHHHHHC
Confidence 456889999995 6667653
No 334
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=36.85 E-value=1.4e+02 Score=29.90 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=34.8
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHh---cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~---ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.+||=...=+|||+|.+.- .... +.|.|.+++ .|+++ ..|--|-.+-......+||+||++
T Consensus 201 ~~PrIaV~GLNPHAGE~G~~G~EE~-~iI~PAI~~~~~~g~~v-----~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK03743 201 KNPKIAVAGLNPHSGEHGLFGDEEV-DEIIPAVEAAQEMGINV-----EGPVPADSVFHLALQGRYDAVLSL 266 (332)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHHH-HHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEc
Confidence 5565555557999997432 2212 355665554 45543 244444444444445689999974
No 335
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=36.80 E-value=1.6e+02 Score=29.11 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=41.6
Q ss_pred CCCcEEEEEE--c-CCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 107 GRPKRLYIFV--N-PFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 107 ~r~~~~~viv--N-P~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
-++.|+.||. | +..|.- .......++..|++.|+++.. +....+....+..+++..+++|.||+.||=|
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i--~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRI--EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcE--EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 3556787776 4 333432 222335788889999987653 2334444444444444434589999999966
No 336
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=36.73 E-value=1.4e+02 Score=26.89 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (424)
+++.|...|++.|+++.-+-| .+|.-|..+++.+ ... ....||
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V------------------------~~g-------~~~~GI 62 (171)
T TIGR01119 14 VKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAV------------------------VSG-------EADLGV 62 (171)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHH------------------------HcC-------CCCEEE
Confidence 446899999999987754333 3444444444433 221 356788
Q ss_pred ecCCChhhhhhhhc
Q 014455 203 VPAGTGNGMIKSLL 216 (424)
Q Consensus 203 iP~GTgN~~Ar~l~ 216 (424)
+=+|||.+++-..+
T Consensus 63 liCGTGiG~siaAN 76 (171)
T TIGR01119 63 CICGTGVGINNAVN 76 (171)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888887764
No 337
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=36.70 E-value=2.5e+02 Score=25.14 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccC----
Q 014455 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---- 165 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~---- 165 (424)
++...|.+.+++.. ..++++|+=|-. |+.. .... ++++.+-+..|+++-.+.+..|+-..++.+-+...
T Consensus 62 ~~~~~~~~~l~~~~----~~~~v~IvSNsa-Gs~~-d~~~-~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 62 PEYAEWLNELKKQF----GKDRVLIVSNSA-GSSD-DPDG-ERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVT 134 (168)
T ss_pred HHHHHHHHHHHHHC----CCCeEEEEECCC-Cccc-CccH-HHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCC
Confidence 46777888776553 224677777754 5444 2122 45666666677887667788887766766655322
Q ss_pred CCceEEEEcCCchHHHHHHHh
Q 014455 166 KYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 166 ~~d~vV~vGGDGTl~evvngL 186 (424)
.++-++++ ||=.+-+|+-|=
T Consensus 135 ~p~eiavI-GDrl~TDVl~gN 154 (168)
T PF09419_consen 135 SPSEIAVI-GDRLFTDVLMGN 154 (168)
T ss_pred CchhEEEE-cchHHHHHHHhh
Confidence 35555555 588888877653
No 338
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=36.67 E-value=55 Score=29.31 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
...+...|++.+++++++.-... ..+... +..++|+||+.||=|...+
T Consensus 10 ~~~l~~~l~~~~~~~~v~~~~~~--~~~~~~--~~~~~d~iii~Gg~~~~~d 57 (192)
T PF00117_consen 10 THSLVRALRELGIDVEVVRVDSD--FEEPLE--DLDDYDGIIISGGPGSPYD 57 (192)
T ss_dssp HHHHHHHHHHTTEEEEEEETTGG--HHHHHH--HTTTSSEEEEECESSSTTS
T ss_pred HHHHHHHHHHCCCeEEEEECCCc--hhhhhh--hhcCCCEEEECCcCCcccc
Confidence 35788899999988888765542 222222 3568999999999887775
No 339
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.30 E-value=3.9e+02 Score=26.31 Aligned_cols=79 Identities=11% Similarity=0.013 Sum_probs=43.8
Q ss_pred CcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 109 ~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+++.+|. |-..|+.-+. .+ ......|++.|.++.-. ......+...++.++...+.|+|++++-......++..
T Consensus 145 ~k~v~ii~~~~~~g~~~~~-~~-~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~ik~a~pD~v~~~~~~~~~~~~~~~ 222 (357)
T cd06337 145 NKKVGILYPNDPDGNAFAD-PV-IGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAIPPDFATFWRQ 222 (357)
T ss_pred CceEEEEeecCchhHHHHH-hh-hcccHHHHhCCcEEecccccCCCCCcHHHHHHHHHhcCCCEEEeCCCccHHHHHHHH
Confidence 46777664 2222322222 22 23456677788776322 22223445566667777889998876544455566666
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 223 ~~~~ 226 (357)
T cd06337 223 AAQA 226 (357)
T ss_pred HHHC
Confidence 6554
No 340
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=36.28 E-value=1.4e+02 Score=22.54 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH------HHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev------vngL~~~~~~~~~~~~plgiiP~ 205 (424)
.+...|+.++++++++......... .....++|+|++.||.+..... +.-+.+.. ....++.-+..
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~----~~~~~i~~~c~ 87 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAA----AAGKPILGICL 87 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceec----cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHH----HcCCEEEEECc
Confidence 5667788888777765444322111 1223589999999999987754 22222211 12457776666
Q ss_pred CCh
Q 014455 206 GTG 208 (424)
Q Consensus 206 GTg 208 (424)
|+.
T Consensus 88 g~~ 90 (115)
T cd01653 88 GAQ 90 (115)
T ss_pred hhH
Confidence 654
No 341
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=35.98 E-value=38 Score=27.20 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.8
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
.+.+.|..+|+++.+.|+++|+..+
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 4669999999999999999998765
No 342
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.96 E-value=2.7e+02 Score=25.54 Aligned_cols=65 Identities=15% Similarity=0.255 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHH-hccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKV-LDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~-~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+.....-.+...+ +...++|+||+.+.+.. ...+..+... .+|+-.+
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~ 89 (270)
T cd06294 24 RGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEE-------KFPFVVI 89 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhc-------CCCEEEE
Confidence 5677888888988776544433222222333 33346999999876533 2444545433 4565555
No 343
>PTZ00287 6-phosphofructokinase; Provisional
Probab=35.89 E-value=60 Score=38.47 Aligned_cols=76 Identities=13% Similarity=0.320 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCeEEEEEcC------ChhhHHHHHHHhccCCCceEEEEcCCchHHHHH--HH-hhcCcCcccccCCcEE
Q 014455 131 DDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV--NG-LLEREDWNDAIKVPLG 201 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~------~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv--ng-L~~~~~~~~~~~~plg 201 (424)
+.+..++..-|... .-|. .+....++++.+...+.|++|++|||||+..+. .. +.... .++.+-
T Consensus 889 ~~V~~i~n~GGtiL--lgssR~~~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~g-----i~i~VI 961 (1419)
T PTZ00287 889 DNIAKHVNQGGLEL--TGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEKK-----IPTSVV 961 (1419)
T ss_pred HHHhhHHHcCCeee--cCCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcC-----CCccEE
Confidence 45555555555333 1122 233444555566666899999999999987543 22 22121 233477
Q ss_pred EecCCChhhhhh
Q 014455 202 VVPAGTGNGMIK 213 (424)
Q Consensus 202 iiP~GTgN~~Ar 213 (424)
-||.==-||+..
T Consensus 962 GVPkTIDNDL~~ 973 (1419)
T PTZ00287 962 GIPLTGSNNLIH 973 (1419)
T ss_pred EeCceeeCCCCC
Confidence 778877899876
No 344
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=35.76 E-value=2.2e+02 Score=24.76 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC---eEEEEEcCChhhHHHHHHHhcc-CCCceEEEEc----CCch--
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGI-- 178 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~---~~~v~~T~~~~~a~~l~~~~~~-~~~d~vV~vG----GDGT-- 178 (424)
..|+.|+.-..... -..+.. +.....|...|+ .++++.....-+.--.++.+.. ++||+||+.| |+-.
T Consensus 3 ~~ri~IV~s~~n~~-i~~~ll-~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~ 80 (144)
T PF00885_consen 3 GLRIAIVVSRFNEE-ITDRLL-EGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHF 80 (144)
T ss_dssp TEEEEEEEESTTHH-HHHHHH-HHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHH
T ss_pred CCEEEEEEEeccHH-HHHHHH-HHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHH
Confidence 34666665433221 122223 456677888888 7888877777776666666543 4699999999 4433
Q ss_pred ---HHHHHHHhhcC
Q 014455 179 ---LVEVVNGLLER 189 (424)
Q Consensus 179 ---l~evvngL~~~ 189 (424)
-+++.+||++-
T Consensus 81 ~~v~~~v~~gl~~l 94 (144)
T PF00885_consen 81 EYVANAVSRGLMDL 94 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23566677643
No 345
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=35.62 E-value=60 Score=34.80 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEc-----CChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 108 RPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
.-.+++-|.|-..|=-+. ..+-.+.+..+...-|.+ +.-| +.+.+-.++.+.+...+.|.+|++|||||+.
T Consensus 103 ~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd--~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~ 180 (550)
T cd00765 103 KGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFD--MICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNT 180 (550)
T ss_pred CCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChh--hhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 346788888866653222 222223566655555531 1111 2334455566666666899999999999886
Q ss_pred HHH--HHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 181 EVV--NGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 181 evv--ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.+. ...+... ..++++--||.==-||+..+
T Consensus 181 ~A~~Lae~~~~~----g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 181 NAALLAENFRSK----GLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHHHHHHHHHhc----CCCceEEEEeeeecCCCCCC
Confidence 543 2222211 13578888898778999864
No 346
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=35.45 E-value=4.2e+02 Score=25.63 Aligned_cols=77 Identities=16% Similarity=0.062 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
-+++.+|+--.. -+. ... +.++..+++.|+.+....+ .. ..+...+++++...+.|+||+.+.......++.
T Consensus 160 ~~~v~~l~~~~~-~g~--~~~-~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~ 235 (348)
T cd06350 160 WTWVGLVYSDDD-YGR--SGL-SDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFC 235 (348)
T ss_pred CeEEEEEEecch-hHH--HHH-HHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHH
Confidence 467777774332 122 223 5677888888987654332 22 346667777776667788888776666667776
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.+.+.
T Consensus 236 ~a~~~ 240 (348)
T cd06350 236 EAYKL 240 (348)
T ss_pred HHHHh
Confidence 66554
No 347
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=35.37 E-value=3.9e+02 Score=25.59 Aligned_cols=77 Identities=10% Similarity=-0.001 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|+.- ..-++. ..+.++..+++.|+++.- .......+...++.++...+.|+|++++.....-.++..+
T Consensus 137 ~~~vail~~~-~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~ 212 (312)
T cd06346 137 YKSVATTYIN-NDYGVG---LADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSA 212 (312)
T ss_pred CCeEEEEEcc-CchhhH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHH
Confidence 5788887742 222222 235678889999987642 2333344566667777667899998887655566666766
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 213 ~~~ 215 (312)
T cd06346 213 YEQ 215 (312)
T ss_pred HHc
Confidence 544
No 348
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=35.34 E-value=1.5e+02 Score=29.57 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=34.5
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHh---cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~---ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.+||=...=+|||+|.+.- ... .+.|.|..++ .|+++. .|--|-.+-......+||+||++
T Consensus 200 ~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAi~~~~~~G~~v~-----GP~paDt~F~~~~~~~~D~vvaM 265 (326)
T PRK03371 200 VKPRIAVAGVNPHAGENGLFGDEE-IRIVTPAIEAMRAKGMDVY-----GPCPPDTVFLQAYEGQYDMVVAM 265 (326)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCccc-----CCCCchhhcccccccCCCEEEEc
Confidence 5665555557999997432 221 2456665554 465542 34344344444445689999975
No 349
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=35.31 E-value=43 Score=26.63 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~ 102 (424)
+.|.|...|+++.+.|+++|+..
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 56899999999999999998754
No 350
>COG0218 Predicted GTPase [General function prediction only]
Probab=35.30 E-value=3.6e+02 Score=24.88 Aligned_cols=61 Identities=13% Similarity=0.250 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC
Q 014455 87 LSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (424)
Q Consensus 87 ~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~ 151 (424)
-+.+.-+.|.+.|.+.|..-..-+.+.+++--..+-.... .++-..|...++++.+..|+-
T Consensus 85 v~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D----~em~~~l~~~~i~~~vv~tK~ 145 (200)
T COG0218 85 VPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD----REMIEFLLELGIPVIVVLTKA 145 (200)
T ss_pred CCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH----HHHHHHHHHcCCCeEEEEEcc
Confidence 3466778999999999987656788889998777765543 467889999999999998864
No 351
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=35.25 E-value=3.8e+02 Score=25.02 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=56.5
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcC-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE-EEEcC----ChhhHHH
Q 014455 84 FEPLSEDSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETT----QQLHAKE 157 (424)
Q Consensus 84 ~~~~~~~~~~~w~~~~~~~~~~~~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~-v~~T~----~~~~a~~ 157 (424)
+...+.+......+.+.+.+...+ .++++.+|..+..........+ +-++..|++.++... +..+. ....+.+
T Consensus 103 V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~-~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (289)
T cd01540 103 VGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT-DGALEALKAPGFPEANIFQAPQKTTDTEGAFD 181 (289)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH-HHHHHHHhcCCCCcceEecccccCcchhhHHH
Confidence 333344444555555554443222 3457777653322212222223 467777887777532 22221 1334455
Q ss_pred HHHHhccC--CCce-EEEEcCCchHHHHHHHhhcCc
Q 014455 158 IVKVLDLS--KYDG-IVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 158 l~~~~~~~--~~d~-vV~vGGDGTl~evvngL~~~~ 190 (424)
.++++-.. ..+. .|++++|.+...+++.|.+..
T Consensus 182 ~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~g 217 (289)
T cd01540 182 AAASTLTKNPNVKNWIIYGLNDETVLGAVRATEQSG 217 (289)
T ss_pred HHHHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHcC
Confidence 55554322 3443 688899999999999997753
No 352
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=35.19 E-value=2e+02 Score=27.62 Aligned_cols=69 Identities=9% Similarity=0.150 Sum_probs=42.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
+.+.+.||++..+ ..--..++ +.+...+++.|+.+.+..+... ....+..+.+...+.|+||+.+.+..
T Consensus 55 ~~~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 55 QTRTIGMLITAST-NPFYSELV-RGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCeEEEEeCCCC-CCcHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 4456777774322 22222333 5778888889988777666432 22234455555568999999987754
No 353
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=35.14 E-value=85 Score=26.55 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCc-----hHHHHHHHhh
Q 014455 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLL 187 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-----Tl~evvngL~ 187 (424)
..++.+|++.|.++... ....++...+..+++. +++|.|+..||=| ...+++..+.
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS-READLVLTTGGTGVGRRDVTPEALAELG 84 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH-hcCCEEEECCCCCCCCCcchHHHHHHhc
Confidence 36788899999876543 2333343344444443 3599999999977 3455555554
No 354
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=35.06 E-value=35 Score=30.79 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.3
Q ss_pred hhhHHHHHHHhccCCCceEEEEcC-CchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 152 QLHAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 152 ~~~a~~l~~~~~~~~~d~vV~vGG-DGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
...|.++.+.+...++ .||..|| .|..-.+..|..... ...+||+|..
T Consensus 18 ~~~A~~lG~~la~~g~-~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~~ 66 (178)
T TIGR00730 18 KELAAELGAYLAGQGW-GLVYGGGRVGLMGAIADAAMENG------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHHCCC-EEEECCChHhHHHHHHHHHHhcC------CeEEEecchh
Confidence 3566777777764432 3444455 799999999987753 5679999975
No 355
>PRK11175 universal stress protein UspE; Provisional
Probab=34.70 E-value=1.6e+02 Score=28.22 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=39.4
Q ss_pred HHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc-CCchHHHHH-----HHhhcCcCcccccCCcEEEecCCCh
Q 014455 135 PLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 135 ~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDGTl~evv-----ngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
..+...+++++........-+..+.+.+...++|.||+.. |.+.+.+.+ ..|+.+ .++|+-++|.+.-
T Consensus 76 ~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~------~~~pvlvv~~~~~ 149 (305)
T PRK11175 76 KPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRK------CPCPVLMVKDQDW 149 (305)
T ss_pred HHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhc------CCCCEEEeccccc
Confidence 3444567776654432222234455555556788777653 344555544 455544 3799999998643
Q ss_pred h
Q 014455 209 N 209 (424)
Q Consensus 209 N 209 (424)
+
T Consensus 150 ~ 150 (305)
T PRK11175 150 P 150 (305)
T ss_pred C
Confidence 3
No 356
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=34.60 E-value=1.4e+02 Score=28.25 Aligned_cols=65 Identities=15% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCeEEEEEcC-ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 132 DVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
-++..-++.+++++++... .+.+..+..+++..+++|.||+.|. -+.+.+....... .+..+.++
T Consensus 22 G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~--~~~~~~~~vA~~~-----p~~~F~~~ 87 (258)
T cd06353 22 GRKAAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSF--GFMDAALKVAKEY-----PDVKFEHC 87 (258)
T ss_pred HHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECch--hhhHHHHHHHHHC-----CCCEEEEC
Confidence 4455555567888887777 5666777778877789999998443 3445444444321 14555554
No 357
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=34.59 E-value=1.7e+02 Score=30.41 Aligned_cols=49 Identities=12% Similarity=0.062 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
....|.+.+.+.+. .+.+.+-|++.+..|.+.. .+.++|+..|+++...
T Consensus 157 ~~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~~------~~~~ll~~lG~~v~~i 205 (448)
T PRK14318 157 ATDRYLRHLLGALP--TRLDGLKVVVDCAHGAASG------VAPEAYRAAGADVIAI 205 (448)
T ss_pred HHHHHHHHHHHHhc--cccCCCEEEEECCCchHHH------HHHHHHHHcCCEEEEe
Confidence 34567777777664 2335688999998876532 3566777878876543
No 358
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=34.47 E-value=99 Score=30.46 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=37.3
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC------hhh----HHHHHHHh--ccCCCceEE-EEcCCchH
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLH----AKEIVKVL--DLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~------~~~----a~~l~~~~--~~~~~d~vV-~vGGDGTl 179 (424)
.-||.|.|+... ...+ +.....|+..|+++.+-..-. .+. |.++.+.+ ... .++|+ +-||+|+.
T Consensus 4 I~viAPSs~~~~-~~~~-~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~~ 80 (305)
T PRK11253 4 FHLIAPSGYPID-QAAA-LRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGAS 80 (305)
T ss_pred EEEEeCCCCCCC-HHHH-HHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCHh
Confidence 447899987532 2335 466778888898765433211 222 33444433 223 67766 56899974
Q ss_pred H
Q 014455 180 V 180 (424)
Q Consensus 180 ~ 180 (424)
.
T Consensus 81 r 81 (305)
T PRK11253 81 R 81 (305)
T ss_pred H
Confidence 3
No 359
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=34.46 E-value=1.6e+02 Score=25.66 Aligned_cols=44 Identities=11% Similarity=0.323 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.++.++....+.|++++++.+.+.++..+...++. +++|+||+-
T Consensus 29 i~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~-~~~dgiIIN 72 (141)
T TIGR01088 29 IVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAE-GQYDGIIIN 72 (141)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-ccCCEEEEc
Confidence 34455666666799999999999999988888764 457877743
No 360
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=34.46 E-value=2.7e+02 Score=26.92 Aligned_cols=77 Identities=9% Similarity=0.004 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.++. +...-++. .. +.++..+++.|.++... ......+...+++++...+.|+|++.+..+-.-.++..+
T Consensus 135 ~~~v~~i~-~~~~~g~~--~~-~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (334)
T cd06327 135 GKKWFFLT-ADYAFGHS--LE-RDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQA 210 (334)
T ss_pred CCeEEEEe-cchHHhHH--HH-HHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHH
Confidence 46666554 44433432 23 57788899999876322 222334555666776667899988887665555566666
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
...
T Consensus 211 ~~~ 213 (334)
T cd06327 211 AEF 213 (334)
T ss_pred HHh
Confidence 543
No 361
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=34.44 E-value=1.6e+02 Score=20.64 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh-ccCCCceEEEEcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSG 175 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~-~~~~~d~vV~vGG 175 (424)
..++.+|+..+++++.+.-+....+.+..++. .....-.|++ ||
T Consensus 13 ~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i-~g 57 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI-DG 57 (60)
T ss_dssp HHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE-TT
T ss_pred HHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE-CC
Confidence 57889999999999887665554444444443 3334445554 44
No 362
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=34.31 E-value=2.9e+02 Score=26.18 Aligned_cols=71 Identities=24% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCeEEEEE-cCChhhHHHHH--HHhccCCCc-eEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 130 LDDVKPLLEDANIQFTVQE-TTQQLHAKEIV--KVLDLSKYD-GIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~-T~~~~~a~~l~--~~~~~~~~d-~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.++..-.++..|+++.-.. ---++--+-+. +.......+ .||++|=||+|-.|++||.. +|.--+|.
T Consensus 133 AeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaLPsvvagLvD---------~PVIavPT 203 (254)
T COG1691 133 AEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEGALPSVVAGLVD---------VPVIAVPT 203 (254)
T ss_pred HHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEcccccchHHHHHhccC---------CCeEeccc
Confidence 3566777888888765333 22222222222 333334555 46678889999999999974 56666776
Q ss_pred CChh
Q 014455 206 GTGN 209 (424)
Q Consensus 206 GTgN 209 (424)
-+|=
T Consensus 204 sVGY 207 (254)
T COG1691 204 SVGY 207 (254)
T ss_pred cccc
Confidence 5543
No 363
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=34.27 E-value=3.3e+02 Score=25.18 Aligned_cols=66 Identities=11% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchH----HHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGIL----VEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl----~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+.+.+..++... ...+..+++...++|+||+.+.+... .+.++-+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~-------~ipvV~~ 89 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKL-------GIPYVFI 89 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHC-------CCCEEEE
Confidence 57888899999888776654332 23345566666789999999877532 2455555443 4665554
No 364
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=34.19 E-value=1.7e+02 Score=30.40 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v 146 (424)
...+.+.|.+.++..-+.+++-|++.+..|.+ . ..+.++|++.|+++..
T Consensus 158 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~Ga~--~----~~~~~il~~lg~~v~~ 206 (450)
T PRK14314 158 PGRYIVFLKATFPKGLTLKGLKIVLDCANGAA--Y----KVAPAVFEELGAEVIC 206 (450)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEECCCchH--H----HHHHHHHHHcCCeEEE
Confidence 45577777776652112346888999877654 2 2356678888887643
No 365
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=34.09 E-value=1.3e+02 Score=25.34 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=52.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh---HHH-HHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKE-IVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~---a~~-l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+++.+|. +..+.......+ +-++..++++|+++.......... ... ....+....+|+|+| +.|.....+++
T Consensus 9 ~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~-~~~~~a~~~~~ 85 (160)
T PF13377_consen 9 HRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIIC-SNDRLALGVLR 85 (160)
T ss_dssp -SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEE-SSHHHHHHHHH
T ss_pred CCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEE-cCHHHHHHHHH
Confidence 45666666 333434444334 467888899999876443322221 111 111222125676655 89999999999
Q ss_pred HhhcCcCcccccCCcEEEecCCChhh
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNG 210 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~ 210 (424)
.|.+..- ...--++++-.+....
T Consensus 86 ~l~~~g~---~vP~di~vv~~~~~~~ 108 (160)
T PF13377_consen 86 ALRELGI---RVPQDISVVSFDDSPL 108 (160)
T ss_dssp HHHHTTS---CTTTTSEEEEESSSGH
T ss_pred HHHHcCC---cccccccEEEecCcHH
Confidence 9987631 0112356666654333
No 366
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=34.09 E-value=2e+02 Score=25.93 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=32.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
+++.||+|. |+ +. .....|+.+|.++..+. .+ .. .+++|+||+-||-++..+
T Consensus 2 m~~~i~~~~--g~------~~-~~~~~l~~~g~~~~~~~--~~-------~~--l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQ--GA------VR-EHLAALEALGAEAVEVR--RP-------ED--LDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEcc--cC------HH-HHHHHHHHCCCEEEEeC--Ch-------hH--hccCCEEEECCCChHHHH
Confidence 578888886 22 21 22355777887665442 21 12 357999999999877643
No 367
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=34.08 E-value=1.2e+02 Score=28.00 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=40.4
Q ss_pred cEEEEEEcCCCCCcc---hhhchHHHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~---a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+-+|++||.++... ....| .++...|.+.+ +.++.+-.+.+ ..++++++.....+.++..-|.-+|.|++.-
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~-~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~al 180 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKW-AELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAAL 180 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHH-HHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHH
T ss_pred cCCeEEEeecCCCccccCCHHHH-HHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHH
Confidence 345688899887622 11234 35666666666 56666666666 5666666543211225555667789998876
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 181 i~~a 184 (247)
T PF01075_consen 181 ISRA 184 (247)
T ss_dssp HHTS
T ss_pred HhcC
Confidence 6543
No 368
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=34.04 E-value=4.1e+02 Score=26.42 Aligned_cols=101 Identities=14% Similarity=0.048 Sum_probs=56.2
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHH
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEI 158 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l 158 (424)
-|.+...+...+..-.+.+.+.. .. |++.+ ++....-+++ +.+.+++.|++.|.+... ..+....+...+
T Consensus 124 vfr~~~~~~~q~~~~~~~l~~~~---~~-k~v~i-i~~~~~yg~~---~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~ 195 (366)
T COG0683 124 VFRTGPTDNQQAAAAADYLVKKG---GK-KRVAI-IGDDYAYGEG---LADAFKAALKALGGEVVVEEVYAPGDTDFSAL 195 (366)
T ss_pred eEEecCChHHHHHHHHHHHHHhc---CC-cEEEE-EeCCCCcchh---HHHHHHHHHHhCCCeEEEEEeeCCCCCChHHH
Confidence 34444445544444444443332 22 45554 4444444443 346889999999997322 223333336667
Q ss_pred HHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 159 VKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+.++...+.|+|++.|--.....++..+.+.
T Consensus 196 v~~i~~~~~d~v~~~~~~~~~~~~~r~~~~~ 226 (366)
T COG0683 196 VAKIKAAGPDAVLVGGYGPDAALFLRQAREQ 226 (366)
T ss_pred HHHHHhcCCCEEEECCCCccchHHHHHHHHc
Confidence 7777667889666555555566666666554
No 369
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=33.95 E-value=1.5e+02 Score=26.80 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
|...+..+|.+.|.++.+...... .+.++ ....+|+||+.||-|..++
T Consensus 11 ft~~~~~~l~~~g~~v~v~~~~~~-~~~~~----~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 11 FTYNLVQYFCELGAEVVVKRNDSL-TLQEI----EALLPLLIVISPGPCTPNE 58 (188)
T ss_pred HHHHHHHHHHHcCCceEEEECCCC-CHHHH----HhcCCCEEEEcCCCCChhh
Confidence 445677888888888776654322 23333 2236899999999999876
No 370
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=33.83 E-value=1.5e+02 Score=23.68 Aligned_cols=55 Identities=7% Similarity=0.234 Sum_probs=34.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
+.++++++..- | -+...+.++++..+++.|+++++..+.... +.... .++|.|++
T Consensus 2 ~~~~ILl~C~~--G--~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~----~~~~~--~~~Dvill 56 (95)
T TIGR00853 2 NETNILLLCAA--G--MSTSLLVNKMNKAAEEYGVPVKIAAGSYGA----AGEKL--DDADVVLL 56 (95)
T ss_pred CccEEEEECCC--c--hhHHHHHHHHHHHHHHCCCcEEEEEecHHH----HHhhc--CCCCEEEE
Confidence 34677777652 3 333356689999999999999877665432 22222 46886654
No 371
>PRK09739 hypothetical protein; Provisional
Probab=33.53 E-value=1.9e+02 Score=26.17 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=23.4
Q ss_pred CcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 109 ~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
++++++|. .|..+ +...++. +.+...+++++.+++++.
T Consensus 3 mmkiliI~~sp~~~-s~s~~l~-~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 3 SMRIYLVWAHPRHD-SLTAKVA-EAIHQRAQERGHQVEELD 41 (199)
T ss_pred CceEEEEEcCCCCC-CcHHHHH-HHHHHHHHHCCCEEEEEE
Confidence 45666664 67664 3333333 577778888887776553
No 372
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=33.52 E-value=56 Score=26.44 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.0
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
.+.+++..+++++-+.|.++|++++.
T Consensus 73 ~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 47799999999999999999998864
No 373
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=33.43 E-value=96 Score=27.98 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=27.8
Q ss_pred HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
|.+.+..+..+.+|.+|.+.|||=+--+++.+...
T Consensus 99 a~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~ 133 (181)
T COG1432 99 AVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDK 133 (181)
T ss_pred HHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHc
Confidence 34555555556899999999999999999998776
No 374
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=33.32 E-value=1.1e+02 Score=27.44 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=41.9
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+|-+.++|- .+++.+.+.|++.|+++.-+-| .+|.-|..+++.+.
T Consensus 4 ~IgsDhaG~-----~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~------------------------ 54 (171)
T PRK08622 4 AIGCDHIVT-----DEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVA------------------------ 54 (171)
T ss_pred EEEeCcchH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHH------------------------
Confidence 354555552 2446899999999987754433 34444444444432
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
.. ....||+=+|||.+++-..+
T Consensus 55 ~g-------~~d~GIliCGTGiG~siaAN 76 (171)
T PRK08622 55 SG-------EADLGVCICGTGVGISNAVN 76 (171)
T ss_pred cC-------CCcEEEEEcCCcHHHHHHHh
Confidence 21 35678888888888887764
No 375
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=33.21 E-value=1.1e+02 Score=29.30 Aligned_cols=63 Identities=17% Similarity=0.313 Sum_probs=39.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCChhhHHH--HHHHhccCCCceEEEEcCCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~~~~a~~--l~~~~~~~~~d~vV~vGGDG 177 (424)
+..+.|-|.++.-... +-.....+|+..|+ ++.+..++...+|.. +...+ ...++|...|||=
T Consensus 52 ~A~i~I~paas~ep~~--iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v--~~a~gIfftGGDQ 117 (293)
T COG4242 52 KAYIVIIPAASREPRA--IGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKV--ENATGIFFTGGDQ 117 (293)
T ss_pred ceEEEEEecCccChhh--hccchhhHHHHhccceeEEEeeecccccchHHHHHHH--HhCceEEEecCcc
Confidence 3466677777665432 32344458888776 466666666655542 33333 4789999999994
No 376
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=33.20 E-value=63 Score=34.56 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEc-----CChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 108 RPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+-.+++-|.|-..|=-+. ..+-.+.+..+...-|.+ +.-| ..+.+-..+++.+...+.|.+|++|||||+.
T Consensus 98 ~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~ 175 (539)
T TIGR02477 98 PNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFD--IIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNT 175 (539)
T ss_pred CCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCch--hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 346788888876664322 222223566666555531 1111 1233445566666667899999999999987
Q ss_pred HHH--HHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 181 EVV--NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 181 evv--ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.+. ...+... ..++++--||.==-||+..
T Consensus 176 ~A~~Lae~~~~~----g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 176 NAALLAEYFAKH----GLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHHHHHHHHHhc----CCCceEEEEeeeecCCCCC
Confidence 653 2222211 1358888889877899875
No 377
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.11 E-value=3.9e+02 Score=24.58 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=39.0
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCC
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
.||+ |...+.--..++ +.+...+++.|+++.+..+.. .....++.+.+...++|+||+.+-+
T Consensus 3 g~i~-~~~~~~~~~~~~-~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~ 65 (269)
T cd06293 3 GLVV-PDIANPFFAELA-DAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNR 65 (269)
T ss_pred EEEe-CCCCCCcHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3444 544332223333 578888889998887776653 3333455666666789999998743
No 378
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.04 E-value=3.4e+02 Score=25.05 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCC---c-hHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGD---G-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGD---G-Tl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+.++..+++.|+.+.+..+... ....++.+.+...+.|+|++.+.. - ...+.++.+... ++|+-.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~-------~ipvV~i 89 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAER-------GLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhC-------CCCEEEE
Confidence 336788889999988877666542 333456667766789999998743 2 133345555443 5666555
No 379
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=33.01 E-value=1.7e+02 Score=30.61 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhcC--CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCe
Q 014455 90 DSKRLWCEKLRDFIDSFG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ 143 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~~--r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~ 143 (424)
+....+.+.|.+.+.... +.+.+-|++.+..|.+. ..+.++|+..|++
T Consensus 163 ~~~~~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~~------~~~~~il~~LG~~ 212 (487)
T cd05799 163 EIDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGG------KFVPRALKEAGFT 212 (487)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCcEEEeCCCCccH------HHHHHHHHHcCCC
Confidence 345667787877765321 34578899999888654 2456778888877
No 380
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=32.97 E-value=1.4e+02 Score=27.57 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCe-EEEEEcCChhhH--HHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~-~~v~~T~~~~~a--~~l~~~~~~~~~d~vV~vGGDG 177 (424)
+...+.|++.|+. +++........+ .++.+.+ .+.|+|++.|||=
T Consensus 47 ~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG~~ 94 (217)
T cd03145 47 EEYRDVFERLGAREVEVLVIDSREAANDPEVVARL--RDADGIFFTGGDQ 94 (217)
T ss_pred HHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCCcH
Confidence 5788888888874 454444321111 2333333 4789999999995
No 381
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=32.90 E-value=3.5e+02 Score=24.00 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=52.9
Q ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh---hhHHHH
Q 014455 82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---LHAKEI 158 (424)
Q Consensus 82 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~---~~a~~l 158 (424)
+.+...+.+.+...++.+.+. . .+++.+|..+.. . ... ...+.++..+++.++++........ .....+
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~----~-~~~i~~i~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (269)
T cd01391 102 FRVGPDNEQAGEAAAEYLAEK----G-WKRVALIYGDDG-A-YGR-ERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQAL 173 (269)
T ss_pred EEEcCCcHHHHHHHHHHHHHh----C-CceEEEEecCCc-c-hhh-HHHHHHHHHHHhcCcEEEeccccCCCccccHHHH
Confidence 334444444454444444333 2 678888876653 1 112 2235677778877755432222111 122334
Q ss_pred HHHhccC-CCceEEEEcCCchHHHHHHHhhcC
Q 014455 159 VKVLDLS-KYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 159 ~~~~~~~-~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
.+.+... +.++|+++ +|.....++..+.+.
T Consensus 174 ~~~l~~~~~~~~i~~~-~~~~a~~~~~~~~~~ 204 (269)
T cd01391 174 LQLLKAAPKPDAIFAC-NDEMAAGALKAAREA 204 (269)
T ss_pred HHHHhcCCCCCEEEEc-CchHHHHHHHHHHHc
Confidence 4444433 45666665 458888888888765
No 382
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=32.58 E-value=67 Score=30.25 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCchHH---------HHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 165 SKYDGIVCVSGDGILV---------EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~---------evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.||+|++.||=|... +++..+.+. .-+++.|=.|.
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~VaAICHGp 139 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKN-------DRFVITLCHGP 139 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHc-------CCEEEEECcHH
Confidence 5799999999987654 444444433 45666665543
No 383
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=32.45 E-value=4.4e+02 Score=25.61 Aligned_cols=67 Identities=7% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCC
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+.+.+.|++.-.+. .-...++ +.+...+++.|+.+.+..+.. +..-.++.+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvi~~~~~~-~f~~~l~-~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 58 VSDTIGVVVMDVSD-AFFGALV-KAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred CCCEEEEEeCCCCC-ccHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 34567777743222 1122233 567788888888776554442 2233345555555689999999754
No 384
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=32.37 E-value=1e+02 Score=26.29 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCc-----hHHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-----Tl~evvngL~~ 188 (424)
..+..+|++.|+++.. +..+.+....+..+++. +++|.||+.||=| -..+++..+..
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~~ 83 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAGG 83 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhcC
Confidence 3688899999987642 33444444444443332 4679999999876 34555555544
No 385
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=32.24 E-value=70 Score=34.36 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=61.1
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHhcCCeEEEEEc-----CChhhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
..-.+++-|.|-..|=-+. ..+-.+.+..+...-|.+ +.-| ..+.+-.++++.+..-+.|.+|++|||||+
T Consensus 100 ~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~ 177 (555)
T PRK07085 100 NPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFD--MIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSN 177 (555)
T ss_pred cCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChh--hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 3456788888877764332 222223566665555531 1111 123345566666666789999999999998
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
..+. -|.+.-. ....++++--||.==-||+..
T Consensus 178 ~~A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~~ 209 (555)
T PRK07085 178 TNAA-ILAEYFA-KHGCKTQVIGVPKTIDGDLKN 209 (555)
T ss_pred HHHH-HHHHHHH-HhCCCccEEEEeeeecCCCCC
Confidence 7653 2322100 011368888899877899873
No 386
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.16 E-value=4.1e+02 Score=25.93 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHHhcc-CCCceEEEE---cCCchHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVLDL-SKYDGIVCV---SGDGILV 180 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~~~~-~~~d~vV~v---GGDGTl~ 180 (424)
+|+=+.|.++ ...+...|.+......++.|++++.+. .....+..+..+++.. ...|+|++- -..-.-+
T Consensus 31 ~P~La~I~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~ 106 (282)
T PRK14180 31 TPKLVAIIVG----NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN 106 (282)
T ss_pred CCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence 3443445554 333455687788888999999998773 3334556666677653 346777653 3455566
Q ss_pred HHHHHhhcCcC
Q 014455 181 EVVNGLLERED 191 (424)
Q Consensus 181 evvngL~~~~~ 191 (424)
++++.+--..|
T Consensus 107 ~i~~~I~p~KD 117 (282)
T PRK14180 107 NVIYSIKPEKD 117 (282)
T ss_pred HHHhhcCcccc
Confidence 77777755544
No 387
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=32.12 E-value=1.6e+02 Score=30.43 Aligned_cols=80 Identities=16% Similarity=0.128 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhh-cC--CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-----------ChhhHHH
Q 014455 92 KRLWCEKLRDFIDS-FG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKE 157 (424)
Q Consensus 92 ~~~w~~~~~~~~~~-~~--r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-----------~~~~a~~ 157 (424)
.+.|.+.|.+.+.. .. +.+.+-|+++|..|.+.. .+.++|+..|+++.....+ .+....+
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~~~~~lkVvvd~~~G~~~~------~~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~ 224 (445)
T cd05803 151 IAEHIDKVLALVDVDVIKIRERNFKVAVDSVNGAGGL------LIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQ 224 (445)
T ss_pred HHHHHHHHHhhcccchhhhccCCCEEEEECCCCcHHH------HHHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHH
Confidence 45577777666431 11 235789999998886542 3567888888876433211 1122334
Q ss_pred HHHHhccCCCceEEEEcCCc
Q 014455 158 IVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 158 l~~~~~~~~~d~vV~vGGDG 177 (424)
+.+.+...++|..++.=|||
T Consensus 225 l~~~v~~~~adlgi~~D~Dg 244 (445)
T cd05803 225 LCAAVKESGADVGFAVDPDA 244 (445)
T ss_pred HHHHHHhcCCCEEEeeCCCC
Confidence 44333334566666666665
No 388
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=32.11 E-value=1.1e+02 Score=28.88 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=32.4
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
.|+.=|-+..- ..+...|+++|+++.++...... ..+.+.++||+||+.||-.
T Consensus 2 ~vl~~pG~n~~-------~~~~~al~~aG~~v~~v~~~~~~-----~~~~~l~~~d~liipGG~~ 54 (238)
T cd01740 2 AVLRFPGSNCD-------RDMAYAFELAGFEAEDVWHNDLL-----AGRKDLDDYDGVVLPGGFS 54 (238)
T ss_pred EEEEcCCcCCH-------HHHHHHHHHcCCCEEEEeccCCc-----cccCCHhhCCEEEECCCCC
Confidence 45666644321 24667788899988765543211 1122346899999999953
No 389
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=31.98 E-value=1.6e+02 Score=22.29 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
..+...|+..|+.+++.... .......+.+...++..++++|.+-
T Consensus 18 ~~~~~~Lr~~g~~v~~d~~~--~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 18 KEVAKKLSDAGIRVEVDLRN--EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHcCCCEEEEECcch
Confidence 36778888899988775432 2333334444557899999999764
No 390
>PRK07053 glutamine amidotransferase; Provisional
Probab=31.77 E-value=86 Score=29.52 Aligned_cols=60 Identities=12% Similarity=0.030 Sum_probs=38.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
.+++++||-|-..-. . ..+...|+..|++++++..... +. ...+..++|+||+.||-..+
T Consensus 1 ~m~~ilviqh~~~e~------~-g~i~~~L~~~g~~~~v~~~~~~-~~----~~~~~~~~d~lii~Ggp~~~ 60 (234)
T PRK07053 1 MMKTAVAIRHVAFED------L-GSFEQVLGARGYRVRYVDVGVD-DL----ETLDALEPDLLVVLGGPIGV 60 (234)
T ss_pred CCceEEEEECCCCCC------C-hHHHHHHHHCCCeEEEEecCCC-cc----CCCCccCCCEEEECCCCCCC
Confidence 367899998854422 1 2467888899998887765322 11 01123579999999986544
No 391
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=31.72 E-value=95 Score=31.73 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCe---EEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 131 DDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 131 ~~v~~~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.++.-|.+++++ +.++.++......++.+ ++ +-.|+||==||-|.+..|.+.- .+| +|-.|.
T Consensus 160 ~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l~-~yiD~iIPRGg~~Li~~v~~~a----------~vP--Vi~~~~ 225 (417)
T COG0014 160 EVIQEALEKAGLPADAVQLIEDTDREEVLELLR-LD-GYIDLVIPRGGAGLIRRVVENA----------TVP--VIEHGV 225 (417)
T ss_pred HHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-hc-CceeEEEcCCcHHHHHHHHhCC----------cCC--EEecCc
Confidence 5777788888864 45677777777888877 33 4579999999999888887522 344 477888
Q ss_pred hhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEE
Q 014455 208 GNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVAT 244 (424)
Q Consensus 208 gN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~ 244 (424)
||.-..- ...-|++.|...++++++++-+++-
T Consensus 226 G~CHiyv-----d~~ADld~A~~ii~nAKtqrPs~CN 257 (417)
T COG0014 226 GNCHIYV-----DESADLDKALKIIVNAKTQRPSVCN 257 (417)
T ss_pred ceEEEEe-----cccCCHHHHHHHHHcccCCCCcccc
Confidence 8864332 3455889999999999988777654
No 392
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=31.63 E-value=4.6e+02 Score=25.70 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=48.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh---HHHHHHHhccCCCceEEEEcCCchH-HHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSKYDGIVCVSGDGIL-VEVV 183 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~---a~~l~~~~~~~~~d~vV~vGGDGTl-~evv 183 (424)
+.+++.+|+ |.....--.. +.+-++..+++.|+.+.+..+....+ -.+..+.+...++|+||+++.|..- .+++
T Consensus 45 ~t~~Igvv~-p~~~~~f~~~-~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l 122 (343)
T PRK10936 45 KAWKLCALY-PHLKDSYWLS-VNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDGLNPDL 122 (343)
T ss_pred CCeEEEEEe-cCCCchHHHH-HHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH
Confidence 344565555 5443322222 23567778888898887776643222 2244455555789999999877542 2444
Q ss_pred HHhhcCcCcccccCCcEEEe
Q 014455 184 NGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgii 203 (424)
.+.. ..+|+-.+
T Consensus 123 -~~~~-------~giPvV~~ 134 (343)
T PRK10936 123 -ELQA-------ANIPVIAL 134 (343)
T ss_pred -HHHH-------CCCCEEEe
Confidence 3332 25776654
No 393
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.50 E-value=2.1e+02 Score=26.35 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
+.+...+++.|+.+.+..+..... ..++.+.+...+.|+|++.+.|-
T Consensus 19 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (265)
T cd06290 19 KGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGDL 66 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 567788888998887765543322 22455666667899999998763
No 394
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=31.41 E-value=1e+02 Score=29.56 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=27.4
Q ss_pred cEEEEEEcCCCCCcch-----hhchHHHHHHHHHhcCCeE-EEEEcCCh
Q 014455 110 KRLYIFVNPFGGKKIA-----SKIFLDDVKPLLEDANIQF-TVQETTQQ 152 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a-----~~~~~~~v~~~l~~ag~~~-~v~~T~~~ 152 (424)
..+.||+||.+|.|.+ ...|...+..+-+.+++++ -.+.|.+.
T Consensus 31 ~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Yg 79 (253)
T PF12138_consen 31 VPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSYG 79 (253)
T ss_pred CcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 4589999999999955 3456544444326677654 24455553
No 395
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=31.40 E-value=2e+02 Score=26.49 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
+|+.||-+..+. . ..+...|++.|.++++..+..+.+ + +++|.||+-|+ |...+.
T Consensus 2 ~~~~iid~g~gn-------~-~s~~~al~~~g~~~~v~~~~~~~~-------l--~~~d~lIlpG~-~~~~~~ 56 (209)
T PRK13146 2 MTVAIIDYGSGN-------L-RSAAKALERAGAGADVVVTADPDA-------V--AAADRVVLPGV-GAFADC 56 (209)
T ss_pred CeEEEEECCCCh-------H-HHHHHHHHHcCCCccEEEECCHHH-------h--cCCCEEEECCC-CcHHHH
Confidence 567766664332 2 246677888888666666765533 2 57999999776 444333
No 396
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=31.36 E-value=1.3e+02 Score=26.17 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (424)
+++.+...|++.|+++.-+= +.++.-+..+++.+. .. ....||
T Consensus 12 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~------------------------~g-------~~~~GI 60 (144)
T TIGR00689 12 LKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVV------------------------AG-------EVSLGI 60 (144)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHH------------------------cC-------CCceEE
Confidence 44689999999998765332 245555555554442 11 456789
Q ss_pred ecCCChhhhhhhhc
Q 014455 203 VPAGTGNGMIKSLL 216 (424)
Q Consensus 203 iP~GTgN~~Ar~l~ 216 (424)
+=||||.+++-..+
T Consensus 61 liCGtGiG~siaAN 74 (144)
T TIGR00689 61 LICGTGIGMSIAAN 74 (144)
T ss_pred EEcCCcHHHHHHHh
Confidence 99999999887765
No 397
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=31.27 E-value=60 Score=30.05 Aligned_cols=46 Identities=24% Similarity=0.334 Sum_probs=29.6
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
-|+++.+++...+ ..|+..||-|..-.+..|.... ....+||+|-.
T Consensus 35 ~a~~lg~~la~~g-~~V~tGG~~GiMea~~~gA~~~------gg~~vGi~p~~ 80 (205)
T COG1611 35 LARELGRELAKRG-LLVITGGGPGVMEAVARGALEA------GGLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHhCC-cEEEeCCchhhhhHHHHHHHHc------CCeEEEecCCC
Confidence 3556677776545 4555666666666666666644 26789999964
No 398
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=31.26 E-value=4.9e+02 Score=25.13 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=47.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.++.+..+- ++. +.+.++..|++.|+++.. .......+....+.++...++|.|++++-..-.-.++..
T Consensus 131 g~~~v~i~~~~~~~-g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 206 (333)
T cd06358 131 GARRWYLIGNDYVW-PRG---SLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQ 206 (333)
T ss_pred CCCeEEEEeccchh-hHH---HHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 35788877665542 222 224677788899987642 222333455556666666789988876554434456676
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 207 ~~~~ 210 (333)
T cd06358 207 FAAA 210 (333)
T ss_pred HHHc
Confidence 6644
No 399
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=31.25 E-value=61 Score=27.09 Aligned_cols=27 Identities=7% Similarity=0.309 Sum_probs=22.8
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
++.+.|...++++.+.|+++|+..+..
T Consensus 89 ~~~~~~~A~s~~e~~~Wi~al~~~~~~ 115 (125)
T cd01252 89 HSVYRISAANDEEMDEWIKSIKASISP 115 (125)
T ss_pred ceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 357779999999999999999888653
No 400
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=31.20 E-value=2.8e+02 Score=22.29 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch------HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI------LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT------l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+.+.|++++........-+.++++.+...+.|.||+.-...+ +..+.+.++.+. +.|+.++
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~------~~pvlvv 131 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESA------PCDVAVV 131 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcC------CCCEEEe
Confidence 455666666788776554332233345555555557787776544322 334555555542 5666655
No 401
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=31.09 E-value=47 Score=26.15 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRD 101 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~ 101 (424)
+.+.|...++++.+.|+++|++
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHh
Confidence 6788999999999999999975
No 402
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=31.00 E-value=3.1e+02 Score=27.38 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=47.1
Q ss_pred hhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 103 ~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+......+++.||++-.+|+++-. +. +.++.+++++|.++-++......-++ + +...+.|+.|.+|
T Consensus 226 I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~k-L---~nf~eiD~fV~~a 291 (332)
T TIGR00322 226 ISKARKGKKFGVVLSSKGGQGRLR-LA-KNLKKNLEEAGKTVLIILLSNVSPAK-L---LMFDQIDVFVQVA 291 (332)
T ss_pred HHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHH-H---hCCCCcCEEEEec
Confidence 334455688999999999988754 44 68999999999998887777766533 2 1223577766554
No 403
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=30.91 E-value=90 Score=24.38 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
..++..|+..|+++.-..+.. +..++|++|+-|-|-
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~-----------~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQ-----------DLQNVDAIVVTGQDT 46 (80)
T ss_pred hHHHHHHHHCCCEEEecCCcc-----------ccCCcCEEEEECCCc
Confidence 478999999998764333221 346899999998774
No 404
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.87 E-value=2.6e+02 Score=22.33 Aligned_cols=76 Identities=17% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCce
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDG 169 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~ 169 (424)
+..+.+.|++. -+++.++=|-.+ +.. +++...|+..|++++. +.|.. .-+.+..++- ..-..
T Consensus 19 a~e~l~~L~~~------g~~~~~lTNns~---~s~----~~~~~~L~~~Gi~~~~~~i~ts~-~~~~~~l~~~--~~~~~ 82 (101)
T PF13344_consen 19 AVEALDALRER------GKPVVFLTNNSS---RSR----EEYAKKLKKLGIPVDEDEIITSG-MAAAEYLKEH--KGGKK 82 (101)
T ss_dssp HHHHHHHHHHT------TSEEEEEES-SS---S-H----HHHHHHHHHTTTT--GGGEEEHH-HHHHHHHHHH--TTSSE
T ss_pred HHHHHHHHHHc------CCCEEEEeCCCC---CCH----HHHHHHHHhcCcCCCcCEEEChH-HHHHHHHHhc--CCCCE
Confidence 44455555443 477888888533 222 3456667889988642 22322 2233333332 35678
Q ss_pred EEEEcCCchHHHHH
Q 014455 170 IVCVSGDGILVEVV 183 (424)
Q Consensus 170 vV~vGGDGTl~evv 183 (424)
|.++|.||...++-
T Consensus 83 v~vlG~~~l~~~l~ 96 (101)
T PF13344_consen 83 VYVLGSDGLREELR 96 (101)
T ss_dssp EEEES-HHHHHHHH
T ss_pred EEEEcCHHHHHHHH
Confidence 99999998766653
No 405
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=30.87 E-value=1.8e+02 Score=28.91 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=33.3
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHH---hcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLE---DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~---~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.+||=...=+|||+|.+.- ... .+.+.|..+ +.|+.++ .|--|-.+-.+....+||+||++
T Consensus 194 ~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~G~~v~-----GP~paDt~F~~~~~~~~D~vvaM 259 (320)
T TIGR00557 194 ARPRIAVAGLNPHAGEGGHLGREE-IDIIIPALEALRAEGIDLI-----GPLPADTLFHPAALAKYDAVLAM 259 (320)
T ss_pred CCCCEEEEecCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCccc-----CCCCchhhcccccccCCCEEEEC
Confidence 4566555567999987432 111 134555544 4455432 33333333334444689999974
No 406
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=30.83 E-value=52 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.668 Sum_probs=21.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
..+.|..+++++...|.++|+.++
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 688899999999999999998875
No 407
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=30.72 E-value=1.9e+02 Score=29.86 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
...+.+.+.+.++..-+.+.+-|++.+..|.+. ..+.++|++.|+++..+
T Consensus 152 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~G~~~------~~~~~ll~~lG~~v~~~ 201 (443)
T PRK10887 152 AGRYIEFCKSTFPNELSLRGLKIVVDCANGATY------HIAPNVFRELGAEVIAI 201 (443)
T ss_pred HHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHhCCeEEEE
Confidence 455777776665421133578899999887653 24567888888876543
No 408
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=30.71 E-value=1.5e+02 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=43.5
Q ss_pred HHHHHHHHhc-CCeEEEEEcCC--hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDA-NIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~a-g~~~~v~~T~~--~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+-++++-++. ++++...+... ..+..+..+++..++||.||+.|.. ..+.+..+...- .++.+.++
T Consensus 23 ~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~--~~~~~~~vA~~y-----Pd~~F~~~ 91 (306)
T PF02608_consen 23 EGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFE--YSDALQEVAKEY-----PDTKFIII 91 (306)
T ss_dssp HHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGG--GHHHHHHHHTC------TTSEEEEE
T ss_pred HHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHH--HHHHHHHHHHHC-----CCCEEEEE
Confidence 4566666677 78877777666 7778888888887899999987754 346666665542 24555555
No 409
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.60 E-value=1.9e+02 Score=29.09 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=33.5
Q ss_pred cCCCcEEEEEEcCCCCCcc--hhhchHHHHHHHHHhcCCe---EEEEEcCChhhHHHHHHHhcc--------CCCceEEE
Q 014455 106 FGRPKRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDL--------SKYDGIVC 172 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG~~~--a~~~~~~~v~~~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~--------~~~d~vV~ 172 (424)
..+||=...=+|||+|.+- +.+.. +.+.|.++++.-+ +++. .|--+-.+-..... .+||+||+
T Consensus 203 i~~PrIaV~GLNPHAGE~G~~G~EE~-~iI~PAIe~~r~~g~g~~v~---GP~paDt~F~~~~~~~~~~~~~~~~D~vva 278 (345)
T PRK02746 203 IEKPRIAIAGLNPHAGEQGQLGTEEK-DWLIPWLESWRQKNPDIQLL---GPIPPDTCWVSPAQAWYGKGVAEAPDGYLA 278 (345)
T ss_pred CCCCcEEEEeeCCCCCCCCCCcHHHH-HHHHHHHHHHHhcCCCceee---CCCCchhhccccccccccccccCCCCEEEE
Confidence 3567655555799999743 12212 4567776664322 3332 23222223233322 57999997
Q ss_pred E
Q 014455 173 V 173 (424)
Q Consensus 173 v 173 (424)
+
T Consensus 279 M 279 (345)
T PRK02746 279 L 279 (345)
T ss_pred C
Confidence 4
No 410
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.33 E-value=5.3e+02 Score=25.21 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHh
Q 014455 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (424)
+.++.+.+.+++.+... .+..++.+|.= |...+...|.+......++.|+.++.+.- ....+..+..+++
T Consensus 10 ~va~~i~~~lk~~v~~l~~~~~~~P~Laii~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~l 86 (285)
T PRK10792 10 TIAQQVRSEVAQKVQARVAAGLRAPGLAVVLV---GSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDEL 86 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666676655432 23234444331 44445567877888899999999876643 3445556666666
Q ss_pred cc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 163 DL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 163 ~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
.. ...|+|++- -..=.-+++++.+--..|
T Consensus 87 N~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KD 119 (285)
T PRK10792 87 NADPTIDGILVQLPLPAHIDNVKVLERIHPDKD 119 (285)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 53 346777653 223334566666644433
No 411
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=30.27 E-value=1.8e+02 Score=25.30 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=42.4
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+|-+.++|-. +++.++.+|+..|+++.-+-| .+|.-+..+++.+. ..
T Consensus 4 ~IgsDh~G~~-----lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~------------------------~~ 54 (141)
T TIGR01118 4 IIGSDLAGKR-----LKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQ------------------------KD 54 (141)
T ss_pred EEEeCcchHH-----HHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHH------------------------cC
Confidence 3556666532 346889999999987643333 44444444444432 21
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhc
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
....||+=||||.+++-..+
T Consensus 55 -------e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 55 -------EQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred -------CCceEEEEcCCCHhHhhhhh
Confidence 45678888888888887764
No 412
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=30.14 E-value=1.8e+02 Score=22.09 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
..+...|+..|+.+++.... .......+.+...++..++++|.
T Consensus 21 ~~~~~~Lr~~g~~v~~~~~~--~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 21 QKLLNALLANGIRVLYDDRE--RKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHCCCEEEecCCC--cCHhHHHHHHHhCCCCEEEEECC
Confidence 35677788889887764432 22233333444568889999995
No 413
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=30.02 E-value=1.5e+02 Score=26.94 Aligned_cols=43 Identities=21% Similarity=0.348 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+...+...|+..|+++++.....+ .+ ..+||+||+.||-++..
T Consensus 15 ~~~~~~~~l~~~g~~~~~~~~~~~-------~~--l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 15 HIDALKRALDELGIDGEVVEVRRP-------GD--LPDCDALIIPGGESTTI 57 (200)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCh-------HH--hccCCEEEECCCcHHHH
Confidence 334677888899988887776542 12 24799999999987753
No 414
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.98 E-value=1.3e+02 Score=27.02 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEE--EEEcCChhhHHHHHHHhccCCCceEEEEcCCch-----HHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-----l~evvngL~~~ 189 (424)
+.+..+|+++|.++. .+..+..........++..+.+|+|+.-||=|- =-|++..++.+
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhc
Confidence 478889999998761 223344333333333332233999999999882 23555666554
No 415
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.95 E-value=4.7e+02 Score=25.59 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (424)
+.|+...+.+++.+... + +|+=..|.++. ..+...|.+......++.|+.++.+.-. ...+..+..++
T Consensus 15 ~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg~----d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 90 (287)
T PRK14176 15 ALAKKIEAEVRSGVERLKSNRGITPGLATILVGD----DPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDS 90 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEECC----CcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45566666666655432 2 34333444433 3345567778888999999998776532 34455566666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
+.. ...|+|++- -..=.-.++++.+--..|
T Consensus 91 LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 124 (287)
T PRK14176 91 LNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKD 124 (287)
T ss_pred HhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccc
Confidence 653 346777653 122334456666644433
No 416
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.90 E-value=5.4e+02 Score=25.17 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhc
Q 014455 91 SKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLD 163 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~----~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~ 163 (424)
.++...+.+++.+... ++..++.+|.= |...+...|.+......++.|++++++.- ....+..+..+++.
T Consensus 9 iA~~i~~~l~~~v~~l~~~~g~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN 85 (286)
T PRK14184 9 TAATIREELKTEVAALTARHGRAPGLAVILV---GEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELN 85 (286)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCEEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555555544322 33334544431 33344556777778889999999987653 23455566666665
Q ss_pred c-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 164 L-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 164 ~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
. ...|+|++- -..=.-+++++.+--..|
T Consensus 86 ~d~~V~GIlvqlPLP~~id~~~i~~~I~p~KD 117 (286)
T PRK14184 86 ARPDIDGILLQLPLPKGLDSQRCLELIDPAKD 117 (286)
T ss_pred CCCcCceEEEecCCCCCCCHHHHHhccCcccC
Confidence 3 346676653 122334456666644443
No 417
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=29.81 E-value=5.6e+02 Score=25.35 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC----eEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI----QFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~----~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
..+++.+|+--..- +++. . +.++..+++.|+ .+... .+....+...+.+++...+.|+||+.+..-....
T Consensus 153 ~w~~vaii~~~~~~-g~~~--~-~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~~~~~~~ 228 (377)
T cd06379 153 KWNKVILLVSDDHE-GRAA--Q-KRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSASEDDAAV 228 (377)
T ss_pred CCeEEEEEEEcCcc-hhHH--H-HHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcCHHHHHH
Confidence 45788877743221 2221 2 467888888888 44322 2233345556667776678999999888888888
Q ss_pred HHHHhhcC
Q 014455 182 VVNGLLER 189 (424)
Q Consensus 182 vvngL~~~ 189 (424)
++..+.+.
T Consensus 229 l~~qa~~~ 236 (377)
T cd06379 229 IYRNAGML 236 (377)
T ss_pred HHHHHHHc
Confidence 88777654
No 418
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=29.70 E-value=2e+02 Score=25.92 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
|...+..+|++.|.++.++..+.. .+.+ +...++|+||+.||=|...+.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~~~----~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 11 FTWNLYQYFCELGADVLVKRNDAL-TLAD----IDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CHHH----HHhcCCCEEEEcCCCCChHHC
Confidence 434678889989998888765432 2222 222479999999999988764
No 419
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.65 E-value=4.8e+02 Score=26.29 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHH
Q 014455 89 EDSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (424)
Q Consensus 89 ~~~~~~w~~~~~~~~~~~----~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (424)
.+.++.+.+.+++.+... ++..++.+|. .|...+...|.+......++.|++++++.- ....+..+..++
T Consensus 62 k~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIl---vGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~ 138 (345)
T PLN02897 62 NVIAEEIRTKIASEVRKMKKAVGKVPGLAVVL---VGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE---eCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345666777777665442 3334454443 144445567877888889999999887643 233455566666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
+.. ...|+|++- -..-.-+++++.+--..|
T Consensus 139 lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~KD 172 (345)
T PLN02897 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKD 172 (345)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccC
Confidence 643 356777763 344456667777755544
No 420
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=29.65 E-value=1.7e+02 Score=27.46 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=33.9
Q ss_pred HHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe-cCCChhhhhhhhccccCCCCCHHHHHH
Q 014455 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV-PAGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 156 ~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii-P~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
.+.++.+...+...|++-||..--.+..+-++...........++-.. +.|+|..|+-.+....-...++.+|+.
T Consensus 153 ~~~a~~l~~~g~~~Vvvt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~GaGD~f~aalaa~la~g~~l~eA~~ 228 (254)
T TIGR00097 153 IKAAKKLRELGPKAVLIKGGHLEGDQAVDVLFDGGEIHILKAPRIETKNTHGTGCTLSAAIAANLAKGLSLKEAVK 228 (254)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCceeEEEEECCeEEEEEecccCCCCCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 344444443456678888874100011111122111000112233334 689999998877532222234555543
No 421
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.63 E-value=5.4e+02 Score=25.12 Aligned_cols=97 Identities=12% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~r~~~~~-vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (424)
+.++.+.+.+++.+... ++..++. |.++ ...+...|.+......++.|+.++.+.-. ...+..+..++
T Consensus 9 ~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (284)
T PRK14179 9 ALAQKMQAELAEKVAKLKEEKGIVPGLVVILVG----DNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIER 84 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCceEEEEEeC----CChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666777777665543 2233444 4444 33445567777788899999998765433 23445556666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCc
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERE 190 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~ 190 (424)
+.. ...|+|++- -..=.-.++++.+--..
T Consensus 85 lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~K 117 (284)
T PRK14179 85 YNQDPTWHGILVQLPLPKHINEEKILLAIDPKK 117 (284)
T ss_pred HhCCCCCCEEEEcCCCCCCCCHHHHHhccCccc
Confidence 643 356777653 22223345666554433
No 422
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=29.62 E-value=3.2e+02 Score=26.53 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=44.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----ChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
..+++.+|+ +....+.. .. +.++..+++.|..+++.... ...+...++.++...+.|.|++++..+-.-.++
T Consensus 137 ~~~~v~~l~-~~~~~g~~--~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~ 212 (346)
T cd06330 137 KAKTWATIN-PDYAYGQD--AW-ADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFV 212 (346)
T ss_pred CccEEEEEC-CchHHHHH--HH-HHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 356777665 33322322 22 46778888885444433221 234555566666667899988876544445666
Q ss_pred HHhhcC
Q 014455 184 NGLLER 189 (424)
Q Consensus 184 ngL~~~ 189 (424)
..+.+.
T Consensus 213 ~~~~~~ 218 (346)
T cd06330 213 RQANAR 218 (346)
T ss_pred HHHHhc
Confidence 666554
No 423
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=29.61 E-value=1.7e+02 Score=26.23 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..+...|++.|++++++..... ..++ .+. .+|+||+.||.+...
T Consensus 12 ~~l~~~l~~~g~~~~~~~~~~~--~~~~-~~~---~~~glii~Gg~~~~~ 55 (188)
T TIGR00888 12 QLIARRLRELGVYSELVPNTTP--LEEI-REK---NPKGIILSGGPSSVY 55 (188)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC--HHHH-hhc---CCCEEEECCCCCCcC
Confidence 4678889999988877654432 1222 121 367999999988644
No 424
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.53 E-value=3.1e+02 Score=25.38 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=50.1
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE-EEcC-ChhhHHHHHHH
Q 014455 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV-QETT-QQLHAKEIVKV 161 (424)
Q Consensus 84 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v-~~T~-~~~~a~~l~~~ 161 (424)
+...+.+....-.+.+.+.+ +..+++.++..+.. . .....+ +-+...+++.++++.- ..+. ....+.+.+++
T Consensus 105 V~~d~~~~g~~aa~~l~~~~---~g~~~i~~~~g~~~-~-~~~~R~-~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (274)
T cd06311 105 VAGDNYGMGRVAGEYIATKL---GGNGNIVVLRGIPT-P-IDNERV-DAFDAAIAKYPIKILDRQYANWNRDDAFSVMQD 178 (274)
T ss_pred EcCCcHHHHHHHHHHHHHHh---CCCCeEEEEECCCC-c-chhHHH-HHHHHHHhhCCcEEEeccCCCCcHHHHHHHHHH
Confidence 33333443343444443332 33567887765443 2 222223 4566777777754421 2222 12334455554
Q ss_pred hcc--CCCceEEEEcCCchHHHHHHHhhcC
Q 014455 162 LDL--SKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 162 ~~~--~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+-. .+.++ |++.+|.+...+++.|.+.
T Consensus 179 ~l~~~~~~~a-i~~~~d~~a~g~~~al~~~ 207 (274)
T cd06311 179 LLTKFPKIDA-VWAHDDDMAVGVLAAIKQA 207 (274)
T ss_pred HHHhCCCcCE-EEECCCcHHHHHHHHHHHc
Confidence 422 23455 4556788877888888765
No 425
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=29.53 E-value=1.7e+02 Score=28.74 Aligned_cols=66 Identities=24% Similarity=0.212 Sum_probs=41.8
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
.-.+|+|-.++.=.-+.+| ..++.+-..+|+. .-+-...-.| .+|..+-..+.|. .||+.|+++.
T Consensus 209 ~~~LF~n~~g~~ltrq~~w-~~lk~~a~~Agi~-~~isPH~LRH--sFATHLL~~GADl-----------RvVQeLLGHa 273 (300)
T COG4974 209 TDALFPNQRGGGLTRQGFW-KRLKDYAERAGID-KKISPHTLRH--SFATHLLENGADL-----------RVVQELLGHA 273 (300)
T ss_pred CCeeeecCCCCCCCHHHHH-HHHHHHHHHhCCC-CCcCchhhHH--HHHHHHHhCCccH-----------HHHHHHhCcc
Confidence 3578889877763334455 6899999999987 2111112223 2445555566665 7889898875
Q ss_pred C
Q 014455 191 D 191 (424)
Q Consensus 191 ~ 191 (424)
|
T Consensus 274 d 274 (300)
T COG4974 274 D 274 (300)
T ss_pred c
Confidence 3
No 426
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.52 E-value=4.9e+02 Score=25.61 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (424)
+.|+...+.+++.+... + +|+-..|.+++ ..+...|.+......++.|++++++. +..+.+..+..++
T Consensus 10 ~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~ 85 (297)
T PRK14168 10 EIREEILEEIRGEVAELKEKYGKVPGLVTILVGE----SPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCC----CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555666666654432 2 35444445444 33455677777888999999998763 3344555666666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
+.. ...|+|++- -..-.-+++++.+--..|
T Consensus 86 lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KD 119 (297)
T PRK14168 86 YNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKD 119 (297)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccc
Confidence 643 346777653 223335556666644433
No 427
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=29.43 E-value=51 Score=32.04 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=35.0
Q ss_pred EEcCC-CCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh----------hhHHHHHHHhccCCCceEE-EEcCCchH
Q 014455 115 FVNPF-GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 115 ivNP~-sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~vV-~vGGDGTl 179 (424)
|+.|. +.- .. ..+ +.....|+..|+++.+-.+-.. ..|.++.+.+.....|+|+ +-||+|+.
T Consensus 3 ivaPS~~~~-~~-~~l-~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~ 76 (284)
T PF02016_consen 3 IVAPSLSPI-DP-ERL-ERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGAN 76 (284)
T ss_dssp EE-SSHHHH-CH-HHH-HHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG
T ss_pred EEeCCCCcc-CH-HHH-HHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH
Confidence 67787 222 22 345 4778889999988776543222 2344555555556778777 67999973
No 428
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=29.41 E-value=2.4e+02 Score=25.86 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=40.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh------------ccCCCceEEEEcCCc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL------------DLSKYDGIVCVSGDG 177 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~------------~~~~~d~vV~vGGDG 177 (424)
++++|| |.|+.. . .+++.++ +.|..++|+..+-.....+++++- +..+++.||++-||-
T Consensus 10 k~vlVv-----GgG~va--~-rk~~~Ll-~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVV-----GGGDVA--L-RKARLLL-KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEE-----CcCHHH--H-HHHHHHH-HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 567666 555533 1 3555544 477777777655444444554321 134677888888888
Q ss_pred hHHHHHHHhh
Q 014455 178 ILVEVVNGLL 187 (424)
Q Consensus 178 Tl~evvngL~ 187 (424)
.+|+-+-...
T Consensus 81 ~ln~~i~~~a 90 (205)
T TIGR01470 81 ELNRRVAHAA 90 (205)
T ss_pred HHHHHHHHHH
Confidence 7776555444
No 429
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=29.32 E-value=5.2e+02 Score=26.06 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=48.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--C---ChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--T---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~---~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
..+++.+|+- ...-+. ... +.+...+++.|+++....+ . ...+...+.+++...+.|+||+++.-.....+
T Consensus 175 ~~k~vaii~~-~~~~g~--~~~-~~~~~~l~~~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~~~dvIil~~~~~~~~~i 250 (410)
T cd06363 175 GWNWVAFLGS-DDEYGR--DGL-QLFSELIANTGICIAYQGLIPLDTDPETDYQQILKQINQTKVNVIVVFASRQPAEAF 250 (410)
T ss_pred CCcEEEEEEe-CChhHH--HHH-HHHHHHHHHCCeEEEEEEEecCCCchHHHHHHHHHHHhcCCCeEEEEEcChHHHHHH
Confidence 4567777762 222222 222 5677889888987643322 1 24566677777776788998887766666666
Q ss_pred HHHhhcC
Q 014455 183 VNGLLER 189 (424)
Q Consensus 183 vngL~~~ 189 (424)
+..+.+.
T Consensus 251 l~qa~~~ 257 (410)
T cd06363 251 FNSVIQQ 257 (410)
T ss_pred HHHHHhc
Confidence 6666543
No 430
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=29.22 E-value=64 Score=27.67 Aligned_cols=50 Identities=20% Similarity=0.259 Sum_probs=29.9
Q ss_pred HhccCCCceEEEEcCCchHH------HHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 161 VLDLSKYDGIVCVSGDGILV------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGTl~------evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
++....||+|++.||.|... +.+..+++.- .....+||-|-.|. ..+++.
T Consensus 32 ~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~---~~~~k~iaaIC~g~-~~L~~~ 87 (147)
T PF01965_consen 32 EIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEF---YEAGKPIAAICHGP-AVLAAA 87 (147)
T ss_dssp GHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHH---HHTT-EEEEETTCH-HHHHHT
T ss_pred HCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHH---HHcCCeEEecCCCc-chhhcc
Confidence 44445799999999999332 2333333321 11368999999988 666655
No 431
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=29.21 E-value=1.5e+02 Score=25.75 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=42.1
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+|-+.++|- .+++.+.+.|++.|+++.-+-+ .+|.-+..+++.+ ...
T Consensus 4 ~igsDhaG~-----~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V------------------------~~~ 54 (142)
T PRK08621 4 IIGADKAGF-----ELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEV------------------------NKS 54 (142)
T ss_pred EEEeCcchH-----HHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHH------------------------HcC
Confidence 355556653 2346889999999987653322 3444444444443 222
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhc
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
....||+=+|||.+++-..+
T Consensus 55 -------~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 55 -------EDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred -------CCceEEEEcCCChhhhhhhh
Confidence 35679999999999887764
No 432
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=29.02 E-value=1.4e+02 Score=27.54 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=17.4
Q ss_pred EecCCChhhhhhhhccccCCCCCHHHHHH
Q 014455 202 VVPAGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 202 iiP~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
+=+.|+|..|+-.+....-...++.+|+.
T Consensus 201 ~~~~GaGD~f~a~l~a~l~~g~~~~~A~~ 229 (242)
T cd01169 201 KNTHGTGCTLSSAIAANLAKGLSLEEAVR 229 (242)
T ss_pred CCCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 34479999998877532222235555554
No 433
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=28.96 E-value=3.2e+02 Score=22.33 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=38.6
Q ss_pred eeEEEEEcCCCeEEEecCCc---cc-eeeeeeeeEEEEc-CceEEEEEeecCCCcccccCCCCceEEeeEEeCCCCHHHH
Q 014455 18 RITAMTLTGDGRLRWTDGHQ---RS-LTLEKQVLGFVVE-GSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDSK 92 (424)
Q Consensus 18 ~~~~~~l~~~~~l~~~~~~~---~~-~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (424)
+...+.||+.+.|..-+... .. +++. +-|.++.. .+.+.|++- -++|.|...+. .|
T Consensus 28 kkR~liLTd~PrL~Yvdp~~~~~KGeI~~~-~~l~v~~k~~~~F~I~tp-----------------~RtY~l~d~~~-~A 88 (104)
T PF14593_consen 28 KKRQLILTDGPRLFYVDPKKMVLKGEIPWS-KELSVEVKSFKTFFIHTP-----------------KRTYYLEDPEG-NA 88 (104)
T ss_dssp EEEEEEEETTTEEEEEETTTTEEEEEE--S-TT-EEEECSSSEEEEEET-----------------TEEEEEE-TTS--H
T ss_pred EEEEEEEccCCEEEEEECCCCeECcEEecC-CceEEEEccCCEEEEECC-----------------CcEEEEECCCC-CH
Confidence 67778888777888777221 11 2232 33445443 355666552 14566665443 47
Q ss_pred HHHHHHHHHhhh
Q 014455 93 RLWCEKLRDFID 104 (424)
Q Consensus 93 ~~w~~~~~~~~~ 104 (424)
..|+++|++...
T Consensus 89 ~~W~~~I~~~~~ 100 (104)
T PF14593_consen 89 QQWVEAIEEVKK 100 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 889999988653
No 434
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=28.86 E-value=1.6e+02 Score=25.89 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=43.9
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHhhc
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLLE 188 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL~~ 188 (424)
+.||+ .|..|...++- +.|...|.. ..++++....... . +..+||.|+++. |+|-+.+.+..++.
T Consensus 2 i~IiY--~S~tGnTe~vA-~~Ia~~l~~--~~~~i~~~~~~~~-----~--~l~~~d~ii~gspty~~g~~p~~~~~fl~ 69 (167)
T TIGR01752 2 IGIFY--GTDTGNTEGIA-EKIQKELGE--DDVDVFNIAKASK-----E--DLNAYDKLILGTPTWGVGELQEDWEDFLP 69 (167)
T ss_pred EEEEE--ECCCChHHHHH-HHHHHHhCC--CceEEEEcccCCH-----h--HHhhCCEEEEEecCCCCCcCcHHHHHHHH
Confidence 56666 44556666544 567777754 3345544433221 1 234789988888 78976654444332
Q ss_pred CcCcccccCCcEEEecCC
Q 014455 189 REDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~G 206 (424)
.-........+++++-+|
T Consensus 70 ~l~~~~l~gk~v~~fg~g 87 (167)
T TIGR01752 70 TLEELDFTGKTVALFGLG 87 (167)
T ss_pred HhhcCCCCCCEEEEEecC
Confidence 100001124667766554
No 435
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=28.77 E-value=3.8e+02 Score=25.31 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhH--------HHHHHHhccCCCceEEEEcCCchHH
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHA--------KEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a--------~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+.-||+=|.+.+++.. .-.+.+++++......+.+ -.|...... ..+++.+ ..+-+++++.+||=++.
T Consensus 29 ~advi~~p~~~~~~~s-~a~~i~~~~~~~~~~~~~l~fpm~~~~~~~~~~~~~~~~~i~~~~-~~g~~v~~l~~GDp~~y 106 (238)
T PRK05948 29 SAPVVAFPAGLAGQPG-LAEQIIAPWLSPQQIKLPLYFPYVQDEEQLEQAWQAAADQVWHYL-EQGEDVAFACEGDVSFY 106 (238)
T ss_pred hCCEEEEeCCCCCchh-HHHHHHHHHcCCCcEEEEecCCccCChHHHHHHHHHHHHHHHHHH-HcCCeEEEEeCCChHHH
Confidence 3457777877654422 1123455655432111111 123333321 1222223 35678999999996655
Q ss_pred HHHH----HhhcCcCcccccCCcEEEecCCCh-hhhhhhh
Q 014455 181 EVVN----GLLEREDWNDAIKVPLGVVPAGTG-NGMIKSL 215 (424)
Q Consensus 181 evvn----gL~~~~~~~~~~~~plgiiP~GTg-N~~Ar~l 215 (424)
.... .|.... ..+++=+||+=|. +..|..+
T Consensus 107 s~~~~l~~~l~~~~-----~~~~veivPGIss~~a~aa~~ 141 (238)
T PRK05948 107 STFTYLAQTLQELY-----PQVAIQTIPGVCSPLAAAAAL 141 (238)
T ss_pred HHHHHHHHHHHhcC-----CCCCEEEECChhHHHHHHHHh
Confidence 5444 443321 2578889997444 5555554
No 436
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.77 E-value=2.3e+02 Score=24.86 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCeEEEEEc-------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEE
Q 014455 129 FLDDVKPLLEDANIQFTVQET-------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLG 201 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T-------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plg 201 (424)
+++.+.+.|++.|+++.-+=| .+|.-|..+++.+. .. ....|
T Consensus 14 lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~------------------------~g-------~~~~G 62 (148)
T PRK05571 14 LKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVV------------------------AG-------EADRG 62 (148)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHH------------------------cC-------CCCEE
Confidence 446889999999987754322 34444445444442 11 35678
Q ss_pred EecCCChhhhhhhhc
Q 014455 202 VVPAGTGNGMIKSLL 216 (424)
Q Consensus 202 iiP~GTgN~~Ar~l~ 216 (424)
|+=||||.+++-..+
T Consensus 63 IliCGtGiG~siaAN 77 (148)
T PRK05571 63 ILICGTGIGMSIAAN 77 (148)
T ss_pred EEEcCCcHHHHHHHh
Confidence 888888888887765
No 437
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=28.74 E-value=1.9e+02 Score=29.64 Aligned_cols=69 Identities=10% Similarity=0.022 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHhhhh------c-CC----CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHH
Q 014455 88 SEDSKRLWCEKLRDFIDS------F-GR----PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (424)
Q Consensus 88 ~~~~~~~w~~~~~~~~~~------~-~r----~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~ 156 (424)
+.++...|.+.+.+.... . .| ..++..|.|.++|-||..-. -.+...|...|..+-++-....+.+.
T Consensus 88 t~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta--~nLA~~LA~~G~rVLlIDlDpQ~~lt 165 (405)
T PRK13869 88 TLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTS--AHLAQYLALQGYRVLAVDLDPQASLS 165 (405)
T ss_pred cHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHH--HHHHHHHHhcCCceEEEcCCCCCCHH
Confidence 456788898888652211 1 11 23789999999999997633 36788899999998888887777665
Q ss_pred HH
Q 014455 157 EI 158 (424)
Q Consensus 157 ~l 158 (424)
.+
T Consensus 166 ~~ 167 (405)
T PRK13869 166 AL 167 (405)
T ss_pred HH
Confidence 54
No 438
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.68 E-value=5e+02 Score=25.26 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhcc-CC
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL-SK 166 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~-~~ 166 (424)
.|+.-.+.+++.+...+...++.+|.= |...+...|.+......++.|++++.+.- ....+..+..+++.. ..
T Consensus 8 ~a~~i~~~~~~~v~~lg~~P~Laii~v---g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~ 84 (279)
T PRK14178 8 VSEKRLELLKEEIIESGLYPRLATVIV---GDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPD 84 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 445555566666555444445544431 33445556777778889999999876543 233445555666643 35
Q ss_pred CceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 167 YDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 167 ~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
.|+|++- -..=.-+++++.+--..|
T Consensus 85 V~GIlvqlPLp~~i~~~~v~~~I~p~KD 112 (279)
T PRK14178 85 INGILVQLPLPKGVDTERVIAAILPEKD 112 (279)
T ss_pred CCeEEEcCCCCCCCCHHHHHhccCcccC
Confidence 6676653 233344556666644443
No 439
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=28.66 E-value=5.3e+02 Score=25.25 Aligned_cols=78 Identities=15% Similarity=0.039 Sum_probs=45.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|. +...-++. +.+.++..|++.|+++... ......+...++.++...+.|+|++.+.-.-.-.++..
T Consensus 132 g~k~vaii~-~d~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 207 (348)
T cd06355 132 GGKRFYLVG-SDYVYPRT---ANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVSTVNGDSNVAFFKQ 207 (348)
T ss_pred CCCeEEEEC-CcchHHHH---HHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHHHHhCCCEEEEeccCCchHHHHHH
Confidence 457787664 33322332 2357788899999876432 22234455556666666789998875433334555666
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+...
T Consensus 208 ~~~~ 211 (348)
T cd06355 208 LKAA 211 (348)
T ss_pred HHHc
Confidence 6544
No 440
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.64 E-value=3e+02 Score=24.93 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=30.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
+|++||-|. +|. . ..+...|+++|.++.++.. + .++ +.+|+||+-||
T Consensus 1 ~~~~v~~~~-~~~------~-~~~~~~l~~~G~~~~~~~~--~-------~~~--~~~d~iii~G~ 47 (200)
T PRK13143 1 MMIVIIDYG-VGN------L-RSVSKALERAGAEVVITSD--P-------EEI--LDADGIVLPGV 47 (200)
T ss_pred CeEEEEECC-Ccc------H-HHHHHHHHHCCCeEEEECC--H-------HHH--ccCCEEEECCC
Confidence 356777665 221 2 3678889999988776531 1 122 47999999775
No 441
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=28.57 E-value=5.6e+02 Score=25.97 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHH
Q 014455 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (424)
Q Consensus 89 ~~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~ 160 (424)
.+.++...+.+++.+... + .|+=..|.++. ..+...|.+......++.|++++.+. +..+.+..+..+
T Consensus 79 k~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlvG~----dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~ 154 (364)
T PLN02616 79 KAVAKKIRDEITIEVSRMKESIGVVPGLAVILVGD----RKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFIS 154 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666777776654432 2 34333444443 33455677778888999999987664 223334455566
Q ss_pred Hhcc-CCCceEEEE---cCCchHHHHHHHhhcCcCc
Q 014455 161 VLDL-SKYDGIVCV---SGDGILVEVVNGLLEREDW 192 (424)
Q Consensus 161 ~~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~~ 192 (424)
++.. ...|+|++- -..-.-.++++.+--..|-
T Consensus 155 ~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~KDV 190 (364)
T PLN02616 155 GFNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDV 190 (364)
T ss_pred HHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCc
Confidence 6653 346777653 2333445566666554443
No 442
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=28.54 E-value=65 Score=24.12 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=21.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
..+.|...++++...|.++|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 578899999999999999998764
No 443
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=28.53 E-value=97 Score=26.84 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.3
Q ss_pred CCCceEEEEcCCch
Q 014455 165 SKYDGIVCVSGDGI 178 (424)
Q Consensus 165 ~~~d~vV~vGGDGT 178 (424)
..||.|++.||.+.
T Consensus 61 ~~~D~lvvpGG~~~ 74 (165)
T cd03134 61 DDYDALVIPGGTNP 74 (165)
T ss_pred HHCCEEEECCCCCh
Confidence 36899999999753
No 444
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=28.37 E-value=2.8e+02 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.212 Sum_probs=30.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV 161 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~ 161 (424)
.++.||..-..+.-.-. |-.+++.+|+..+++|+.+.......+.+.+.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp--~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~ 57 (90)
T cd03028 8 NPVVLFMKGTPEEPRCG--FSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE 57 (90)
T ss_pred CCEEEEEcCCCCCCCCc--HHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH
Confidence 56777765222222222 446889999999999988776544444443333
No 445
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=28.29 E-value=56 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=19.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRD 101 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~ 101 (424)
+.+.|...++++.+.|+.+|+.
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhc
Confidence 6788999999999999999864
No 446
>PRK09492 treR trehalose repressor; Provisional
Probab=28.28 E-value=2.2e+02 Score=27.20 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+++.+|-.+.+....+.... +-.+..++++|+++........ ..+.+.++++...++++|+|.. |-+-..+++.|.+
T Consensus 176 ~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~-D~~A~g~~~al~~ 253 (315)
T PRK09492 176 RHISYLGVDHSDVTTGKRRH-QAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLTPETTALVCAT-DTLALGASKYLQE 253 (315)
T ss_pred CeEEEEcCCcccchhHHHHH-HHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhhcCCCEEEEcC-cHHHHHHHHHHHH
Q ss_pred C
Q 014455 189 R 189 (424)
Q Consensus 189 ~ 189 (424)
+
T Consensus 254 ~ 254 (315)
T PRK09492 254 Q 254 (315)
T ss_pred c
No 447
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=28.14 E-value=1.8e+02 Score=23.56 Aligned_cols=79 Identities=10% Similarity=0.212 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
+++++. .+| -...+..++++.++++.|+++++...... ++...+ +++|.|+ .|-.= .--.+.+-+.-
T Consensus 2 ~Ill~C--~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~----e~~~~~--~~~Dvil-l~PQv--~~~~~~i~~~~ 68 (99)
T cd05565 2 NVLVLC--AGG--GTSGLLANALNKGAKERGVPLEAAAGAYG----SHYDMI--PDYDLVI-LAPQM--ASYYDELKKDT 68 (99)
T ss_pred EEEEEC--CCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHH----HHHHhc--cCCCEEE-EcChH--HHHHHHHHHHh
Confidence 356666 333 44446778999999999999887655432 232332 4688554 44332 22222222110
Q ss_pred CcccccCCcEEEecC
Q 014455 191 DWNDAIKVPLGVVPA 205 (424)
Q Consensus 191 ~~~~~~~~plgiiP~ 205 (424)
....+|+.+||.
T Consensus 69 ---~~~~ipv~~I~~ 80 (99)
T cd05565 69 ---DRLGIKLVTTTG 80 (99)
T ss_pred ---hhcCCCEEEeCH
Confidence 113689999884
No 448
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=28.01 E-value=1.6e+02 Score=28.68 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--------------CChhhHH
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--------------TQQLHAK 156 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--------------~~~~~a~ 156 (424)
....|+.++++. ..++++++.|.=|...+.= ....+.+.....-++.--..| +..+++.
T Consensus 90 ~i~~~v~~vk~~------~P~~~~l~DPVMGD~gglY-V~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~ 162 (281)
T COG2240 90 AIAGIVKAVKEA------NPNALYLCDPVMGDPGGLY-VAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAV 162 (281)
T ss_pred HHHHHHHHHhcc------CCCeEEEeCCcccCCCcee-eccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHH
Confidence 444565555433 3358899999988755321 112333333322222111122 3356777
Q ss_pred HHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCC--cEEEecCCChhhhhhhhcc
Q 014455 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKV--PLGVVPAGTGNGMIKSLLD 217 (424)
Q Consensus 157 ~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~--plgiiP~GTgN~~Ar~l~~ 217 (424)
+.++.+...+...|++-+=...-.+.-+-++.....+..-.. -+-..|-|||.-|+.-|..
T Consensus 163 ~aa~~L~~~gp~~vlVTS~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~GtGDL~sallla 225 (281)
T COG2240 163 KAARKLGADGPKIVLVTSLSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALLLA 225 (281)
T ss_pred HHHHHHhhcCCCEEEEecccccCCCCceEEEeccchhhhhhhhhcCCCCCCCchHHHHHHHHH
Confidence 778877666677777643222111111111111100000011 2223399999999887643
No 449
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=27.96 E-value=2.4e+02 Score=29.14 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
...+.+.+.+.+... +..+.-|++++..|.+. ..+.++|++.|+++..+
T Consensus 154 ~~~Y~~~l~~~~~~~-~~~~~kVvvD~~nG~~~------~~~~~ll~~lg~~v~~i 202 (443)
T PRK14320 154 IDEYIESIHSRFAKF-VNYKGKVVVDCAHGAAS------HNFEALLDKFGINYVSI 202 (443)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEECCCchHH------HHHHHHHHHcCCcEEEE
Confidence 345666665554311 11235889999887653 24567788888876544
No 450
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=27.80 E-value=3.1e+02 Score=26.37 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE---EEEcC-ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~---v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+++.+|..|..........+ +-....|+++|+++. +.... ....+.+.++++...++++|+ |++|.+-..+++
T Consensus 176 ~~~I~~i~g~~~~~~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~-~~~d~~A~g~~~ 253 (329)
T TIGR01481 176 HKSIAFVGGPLSDSINGEDRL-EGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVF-VASDEMAAGILN 253 (329)
T ss_pred CCeEEEEecCcccccchHHHH-HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEE-EcCcHHHHHHHH
Confidence 467877765543221112223 356677888887543 22222 223455666665434566655 578888888999
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.|.+.
T Consensus 254 al~~~ 258 (329)
T TIGR01481 254 AAMDA 258 (329)
T ss_pred HHHHc
Confidence 88765
No 451
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=27.77 E-value=1.8e+02 Score=27.01 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=32.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHH-hcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~-~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
+|+.||.+|-+. .. ..+...|+ .+|.++..+..+. ...+.+|+||+.||-+
T Consensus 1 ~~v~Vl~~~G~n---~~----~d~~~a~~~~~G~~~~~v~~~~----------~~l~~~D~lvipGG~~ 52 (219)
T PRK03619 1 MKVAVIVFPGSN---CD----RDMARALRDLLGAEPEYVWHKE----------TDLDGVDAVVLPGGFS 52 (219)
T ss_pred CEEEEEecCCcC---hH----HHHHHHHHhcCCCeEEEEecCc----------CCCCCCCEEEECCCCc
Confidence 378999999542 11 23456677 7888765443221 1235799999999854
No 452
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=27.76 E-value=2.7e+02 Score=28.83 Aligned_cols=49 Identities=20% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
...+.+.+.+.+... .+++-|++.+..|.+. ..+.++|++.|+++..+.
T Consensus 156 ~~~Y~~~l~~~i~~~--~~~lkvvvD~~nG~~~------~~~~~ll~~lg~~v~~in 204 (448)
T PRK14316 156 LRKYLQFLKSTIDED--LSGLKVALDCANGATS------SLAPRLFADLGADVTVIG 204 (448)
T ss_pred HHHHHHHHHHhcCcc--cCCCEEEEECCCchhh------HHHHHHHHHcCCeEEEEc
Confidence 345777776665421 2468889998877653 246678888888776543
No 453
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.74 E-value=2e+02 Score=28.27 Aligned_cols=72 Identities=21% Similarity=0.159 Sum_probs=42.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
..-+.|+-.|....++..+.....++.+.+++++++. ..+...+. ++.+.+..-++|.+|++|=.-.|.+-+
T Consensus 24 ~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~--~~~~~~~~-~~~~~l~~~~~Dliv~~~~~~iip~~i 95 (309)
T PRK00005 24 HEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVL--QPEKLRDP-EFLAELAALNADVIVVVAYGQILPKAV 95 (309)
T ss_pred CcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEE--CcCCCCCH-HHHHHHHhcCcCEEEEehhhcccCHHH
Confidence 3456677677665444443333568888889998763 22332222 333444445899999998765555433
No 454
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.74 E-value=6e+02 Score=25.04 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHh
Q 014455 90 DSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~---~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~ 162 (424)
+.++.+.+.+++.+... + +|+=..|.++. ..+...|.+......++.|+.++.+.-. ...+..+..+++
T Consensus 11 ~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 86 (301)
T PRK14194 11 AAAARVLAQVREDVRTLKAAGIEPALAVILVGN----DPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAEL 86 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45667777777766543 2 34333444443 3344567777778899999999876543 334455555666
Q ss_pred cc-CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 163 DL-SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 163 ~~-~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
.. ...|+|++- -..-.-+++++.+--..|
T Consensus 87 N~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KD 119 (301)
T PRK14194 87 NADPSVNGILLQLPLPAHIDEARVLQAINPLKD 119 (301)
T ss_pred cCCCCCCeEEEeCCCCCCCCHHHHHhccCchhc
Confidence 43 346677653 123344456666654443
No 455
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.74 E-value=4.9e+02 Score=25.72 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhH--HHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a--~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~ 189 (424)
+-++...++.|+++.+......... .++.+.+...++|+|++++-|.+ +..+++.+...
T Consensus 43 ~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~ 104 (336)
T PRK15408 43 NGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQR 104 (336)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHC
Confidence 4567778888887765332222222 24555666679999999987754 56677776654
No 456
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=27.67 E-value=2.2e+02 Score=25.61 Aligned_cols=83 Identities=23% Similarity=0.322 Sum_probs=53.5
Q ss_pred eEEeCCCCHHHHHHHHHHHHHh----hhh--cCCCcEEEEEEcCCC----------CCcchhhchHHHHHHHHHhcCCeE
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDF----IDS--FGRPKRLYIFVNPFG----------GKKIASKIFLDDVKPLLEDANIQF 144 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~----~~~--~~r~~~~~vivNP~s----------G~~~a~~~~~~~v~~~l~~ag~~~ 144 (424)
.+.|-..+.-..+.|+..+.-. +.. ..+|.-+.++++|.- |.....+.|.+.++++|+++++++
T Consensus 80 ~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~ 159 (187)
T COG3172 80 KVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPF 159 (187)
T ss_pred ceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcE
Confidence 4566666666778888766331 211 156778888999874 222345678889999999999988
Q ss_pred EEEEcC----ChhhHHHHHHHhc
Q 014455 145 TVQETT----QQLHAKEIVKVLD 163 (424)
Q Consensus 145 ~v~~T~----~~~~a~~l~~~~~ 163 (424)
.++..+ +-.++.+.++++.
T Consensus 160 v~i~~~~y~eR~~~~~~aV~ell 182 (187)
T COG3172 160 VVIEGEDYLERYLQAVEAVEELL 182 (187)
T ss_pred EEEcCCCHHHHHHHHHHHHHHHH
Confidence 766552 2344555555543
No 457
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.67 E-value=2e+02 Score=23.72 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
..+...|+.+|+.+++... .......+.+...++..++++|.+-
T Consensus 45 ~~la~~LR~~gi~v~~d~~---~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 45 KEISEELRELGFSVKYDDS---GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHCCCEEEEeCC---CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 4677788889998877554 2334444555567899999999764
No 458
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=27.52 E-value=1.3e+02 Score=29.13 Aligned_cols=59 Identities=8% Similarity=0.020 Sum_probs=37.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+|++++.+..+..|-.. .. ..+...|.+.|+++.+...... .+.+.+...++|+|.+-.
T Consensus 1 MkIl~~~~~~~~gG~~~-~~-~~l~~~l~~~G~~v~v~~~~~~----~~~~~~~~~~~diih~~~ 59 (365)
T cd03825 1 MKVLHLNTSDISGGAAR-AA-YRLHRALQAAGVDSTMLVQEKK----ALISKIEIINADIVHLHW 59 (365)
T ss_pred CeEEEEecCCCCCcHHH-HH-HHHHHHHHhcCCceeEEEeecc----hhhhChhcccCCEEEEEc
Confidence 35666544433333333 22 4688889999999988876654 444555556899988644
No 459
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=27.51 E-value=1.4e+02 Score=26.67 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=30.4
Q ss_pred HHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
..+...|.+.|+++..+ ....+....+..+++. +.+|.||+.||=|
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-~~~dlVIttGG~G 69 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-ERADLVITTGGLG 69 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEECCCCC
Confidence 46888899999887543 3344333344444433 4799999999977
No 460
>PRK08250 glutamine amidotransferase; Provisional
Probab=27.46 E-value=1e+02 Score=28.94 Aligned_cols=44 Identities=9% Similarity=0.069 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
.+.+.++.+|+++++..... ++. + ..+.++||+||+.||=.+.+
T Consensus 16 ~~~~~~~~~g~~~~~~~~~~-g~~--~--p~~~~~~d~vii~GGp~~~~ 59 (235)
T PRK08250 16 AYLKWAENRGYDISYSRVYA-GEA--L--PENADGFDLLIVMGGPQSPR 59 (235)
T ss_pred HHHHHHHHCCCeEEEEEccC-CCC--C--CCCccccCEEEECCCCCChh
Confidence 46777888999888765432 211 1 01235799999999966544
No 461
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=27.31 E-value=2.5e+02 Score=28.17 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=33.5
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHh---cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~---ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.+||=...=+|||+|.+.- ... .+.+.|.+++ .|+++. .|--|-.+-......+||+||++
T Consensus 206 ~~PrIaV~GLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~Gi~v~-----GP~paDt~F~~~~~~~~D~vvaM 271 (336)
T PRK05312 206 ASPRLAVAGLNPHAGEGGALGRED-IDIIAPAIEQLRAEGIDAR-----GPLPADTMFHAAARATYDAAICM 271 (336)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCCcc-----CCCCchhhcccccccCCCEEEEc
Confidence 4565555557999997432 221 1355665554 455432 33333333334444689999975
No 462
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=27.30 E-value=3e+02 Score=24.99 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=22.3
Q ss_pred EEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 111 RLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 111 ~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
++++|. +|+.++.. .++. +.+...+.+.|.+++++
T Consensus 2 kIl~I~GSpr~~S~t-~~l~-~~~~~~l~~~g~ev~~i 37 (191)
T PRK10569 2 RVITLAGSPRFPSRS-SALL-EYAREWLNGLGVEVYHW 37 (191)
T ss_pred EEEEEEcCCCCCChH-HHHH-HHHHHHHHhCCCEEEEE
Confidence 455554 67665433 3334 57888888888888755
No 463
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.24 E-value=5.1e+02 Score=25.26 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhc
Q 014455 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~---~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~ 163 (424)
+.++...+.+++.+... ++..++.+|. .|...+...|.+......++.|++++++.-. ...+..+..+++.
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 86 (284)
T PRK14190 10 EVAKEKREQLKEEVVKLKEQGIVPGLAVIL---VGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555556665554432 2333454443 2444455678778888899999999876532 2344555556664
Q ss_pred c-CCCceEEEE---cCCchHHHHHHHhhcC
Q 014455 164 L-SKYDGIVCV---SGDGILVEVVNGLLER 189 (424)
Q Consensus 164 ~-~~~d~vV~v---GGDGTl~evvngL~~~ 189 (424)
. ...|+|++- -..=.-+++++.+--.
T Consensus 87 ~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~ 116 (284)
T PRK14190 87 ADPRINGILVQLPLPKHIDEKAVIERISPE 116 (284)
T ss_pred CCCCCCEEEEeCCCCCCCCHHHHHhcCCcc
Confidence 3 245666653 1233344555555433
No 464
>PRK09982 universal stress protein UspD; Provisional
Probab=27.16 E-value=2.8e+02 Score=23.26 Aligned_cols=47 Identities=15% Similarity=0.399 Sum_probs=31.3
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHH---HHhhcCcCcccccCCcEEEecCC
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVV---NGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evv---ngL~~~~~~~~~~~~plgiiP~G 206 (424)
-+..+.+.+...++|.||+..+-+.+..++ ++++++ .++|+-++|.-
T Consensus 91 p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~va~~V~~~------s~~pVLvv~~~ 140 (142)
T PRK09982 91 MPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINK------MSADLLIVPFI 140 (142)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChhHHHHHHHHHHHHHhc------CCCCEEEecCC
Confidence 345666666667899999887755555554 444443 37899998864
No 465
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=27.12 E-value=4.2e+02 Score=26.70 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=45.8
Q ss_pred CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc-----------------cCCCceEEEEcCCchHHHHH
Q 014455 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD-----------------LSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 121 G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~-----------------~~~~d~vV~vGGDGTl~evv 183 (424)
|...+.+.+.+.+...+....-++.++.....++..++.+... ....|.||+=+|=.|+.|+.
T Consensus 190 GGS~Ga~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADLvIsRaGa~Ti~E~~ 269 (357)
T COG0707 190 GGSQGAKALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALLAAADLVISRAGALTIAELL 269 (357)
T ss_pred CCcchhHHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHHHhccEEEeCCcccHHHHHH
Confidence 4444444455455444433221355555555555333332221 13568999999999999987
Q ss_pred HHhhcCcCcccccCCcEEEecCCCh
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
. ..+|.-+||...+
T Consensus 270 a-----------~g~P~IliP~p~~ 283 (357)
T COG0707 270 A-----------LGVPAILVPYPPG 283 (357)
T ss_pred H-----------hCCCEEEeCCCCC
Confidence 4 3678889998766
No 466
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=27.00 E-value=2.4e+02 Score=24.77 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=41.3
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHh--cCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~--ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|-+-++|- .+++.+++.|+. .|+++.-+-+ .++.-+..+++.+.
T Consensus 5 I~igsDhaG~-----~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~--------------------- 58 (151)
T PTZ00215 5 VAIGSDHAGF-----DLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVL--------------------- 58 (151)
T ss_pred EEEEeCCchH-----HHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHh---------------------
Confidence 3455555553 244688999999 8887643322 34444444444432
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
.. ....||+=||||.+++-..+
T Consensus 59 ---~~-------~~~~GIliCGtGiG~siaAN 80 (151)
T PTZ00215 59 ---KG-------EADTGILVCGSGIGISIAAN 80 (151)
T ss_pred ---cC-------CCcEEEEEcCCcHHHHHHHh
Confidence 21 34578888888888877764
No 467
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=26.98 E-value=64 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRD 101 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~ 101 (424)
+.+.|...+++++..|+++|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 6788999999999999999875
No 468
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=26.92 E-value=2.6e+02 Score=27.91 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=34.6
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHHHHHHHHh---cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLED---ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~l~~---ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.+||=...=+|||+|.+.- .+.. +.|.|..++ .|++++ .|--|-.+-......+||+||++
T Consensus 197 ~~PrIaV~GLNPHAGE~G~~G~EE~-~iI~PAi~~~~~~Gi~v~-----GP~paDt~F~~~~~~~~D~vvaM 262 (329)
T PRK01909 197 AAPRILVTGLNPHAGENGYLGREEI-DVIEPALARARAAGIDAR-----GPYPADTLFQPRYLEDADCVLAM 262 (329)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHHH-HHHHHHHHHHHHCCCCcc-----CCCCchhhcccccccCCCEEEEc
Confidence 5666555557999997432 2211 355655554 465532 44444444444445689999974
No 469
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=26.66 E-value=2.2e+02 Score=25.89 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
|...+...|++.++++.++..... ...+ +...++|+||+.||=|..++.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~~~----~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 11 FTFNLVQFLGELGQELVVKRNDEV-TISD----IENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CHHH----HhhCCCCEEEECCCCCChHhC
Confidence 445688899999998887765422 2222 223479999999999988763
No 470
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=26.51 E-value=1.3e+02 Score=32.42 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCCCCcc--hhhchHHHHHHHHHhcCCeEE---EEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 109 PKRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQFT---VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~--a~~~~~~~v~~~l~~ag~~~~---v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
-.+++-|.|-..|=-+ -..+-.+.+..+....|.+.- -...+.+.+-.++.+.+..-+.|.+|++|||||...+.
T Consensus 128 ~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dlLGS~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~ 207 (568)
T PLN02251 128 GSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDMICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTNAC 207 (568)
T ss_pred CCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceEecccCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 4578888876665422 222223455566666664320 00122344555566666666899999999999886653
Q ss_pred H--H-hhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 184 N--G-LLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 184 n--g-L~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
. . +.+. ..++++--||.==-||+..+.
T Consensus 208 ~Lae~~~~~-----g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 208 LLAEYFRAK-----NLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred HHHHHHHhc-----CCCeeEEEeCceEeCCCCCCc
Confidence 2 2 2222 125777778876678887654
No 471
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.50 E-value=5.9e+02 Score=24.54 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=45.8
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHh-cCCeEEEEE--cCChhhHHHHHHHhccCCCceEE
Q 014455 95 WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 95 w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~-ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV 171 (424)
+...+-+.+......+++.+|++....-++. +.+.+.+.+++ .|.++.... .....+....+.++...+.|+|+
T Consensus 120 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~v~~i~~~~~d~v~ 196 (332)
T cd06344 120 AARALAKYLKKKNKIKKVAIFYNSTSPYSQS---LKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLV 196 (332)
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCchHhHH---HHHHHHHHHHHhcCCeeeeeccCCCCCCCHHHHHHHHHhcCCCEEE
Confidence 3444444443333467898888754422222 22466777877 466543221 11122344455566556788777
Q ss_pred EEcCCchHHHHHHHhh
Q 014455 172 CVSGDGILVEVVNGLL 187 (424)
Q Consensus 172 ~vGGDGTl~evvngL~ 187 (424)
+.+.-+.+..++..+.
T Consensus 197 ~~~~~~~~~~~~~~~~ 212 (332)
T cd06344 197 LFPDTDTLDKALEVAK 212 (332)
T ss_pred EeCChhHHHHHHHHHH
Confidence 6553334444444443
No 472
>COG1647 Esterase/lipase [General function prediction only]
Probab=26.34 E-value=1.8e+02 Score=27.51 Aligned_cols=85 Identities=20% Similarity=0.197 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH---H---------------HHHhccCCCceEE
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE---I---------------VKVLDLSKYDGIV 171 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~---l---------------~~~~~~~~~d~vV 171 (424)
.+..+++.-+.|+.+-. +.+...|+++| ++++...++||... + -+.+...+||-|.
T Consensus 15 ~~AVLllHGFTGt~~Dv----r~Lgr~L~e~G--yTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~ 88 (243)
T COG1647 15 NRAVLLLHGFTGTPRDV----RMLGRYLNENG--YTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIA 88 (243)
T ss_pred CEEEEEEeccCCCcHHH----HHHHHHHHHCC--ceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 47888889888876543 47889999997 56677888887631 1 1233446899988
Q ss_pred EEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
++|= ++.-|+...+.. .-+|-+|+|+-+.
T Consensus 89 v~Gl--SmGGv~alkla~------~~p~K~iv~m~a~ 117 (243)
T COG1647 89 VVGL--SMGGVFALKLAY------HYPPKKIVPMCAP 117 (243)
T ss_pred EEee--cchhHHHHHHHh------hCCccceeeecCC
Confidence 8862 233455555554 2457788887543
No 473
>PRK11249 katE hydroperoxidase II; Provisional
Probab=26.28 E-value=1.5e+02 Score=33.10 Aligned_cols=63 Identities=10% Similarity=0.127 Sum_probs=35.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh----hHHHHH--HHh---ccCCCceEEEEcCCc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEIV--KVL---DLSKYDGIVCVSGDG 177 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~----~a~~l~--~~~---~~~~~d~vV~vGGDG 177 (424)
+++.||+.+-. .... + ..+..+|+.+|+.+.++-.+... +...+. ..+ ....||+|++.||..
T Consensus 598 RKIaILVaDG~---d~~e-v-~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 598 RKVAILLNDGV---DAAD-L-LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKA 669 (752)
T ss_pred cEEEEEecCCC---CHHH-H-HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCch
Confidence 46667765532 2222 3 36788899999988876543210 001111 111 112599999999954
No 474
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=26.27 E-value=1.3e+02 Score=28.56 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=15.8
Q ss_pred cCCChhhhhhhhccccCCCCCHHHHHH
Q 014455 204 PAGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 204 P~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
..|||..|+-.+....-...++.+|+.
T Consensus 210 ~~GaGD~f~a~l~~~l~~g~~l~~A~~ 236 (266)
T PRK06427 210 THGTGCTLSAAIAAELAKGASLLDAVQ 236 (266)
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence 369999998887532212234555443
No 475
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=26.13 E-value=1.5e+02 Score=23.54 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHHHhhh-h-cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----C-------h--hhHHHH
Q 014455 94 LWCEKLRDFID-S-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----Q-------Q--LHAKEI 158 (424)
Q Consensus 94 ~w~~~~~~~~~-~-~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~-------~--~~a~~l 158 (424)
.|++.|.+.+. . .-+.+++.|++.+..|.+. ..+..+|+..|.++...... . + .....+
T Consensus 2 ~Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~------~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~ 75 (104)
T PF02879_consen 2 AYIESLLSFIDILEAIKKSGLKIVVDCMNGAGS------DILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRL 75 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTH------HHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHH
T ss_pred hHHHHHhhhccchhhcccCCCEEEEECCCCHHH------HHHHHHHHHcCCcEEEEecccccccccccccccccchhHHH
Confidence 35556655554 1 1123456789999888664 24567788888765443221 1 1 112334
Q ss_pred HHHhccCCCceEEEEcCCc
Q 014455 159 VKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+...++|..++.=|||
T Consensus 76 ~~~v~~~~ad~g~~~DgDa 94 (104)
T PF02879_consen 76 IKIVRESGADLGIAFDGDA 94 (104)
T ss_dssp HHHHHHSTTSEEEEE-TTS
T ss_pred HHHhhccCceEEEEECCcC
Confidence 4444445778888888887
No 476
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=25.87 E-value=2.7e+02 Score=24.51 Aligned_cols=67 Identities=18% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-------EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-------ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-------~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.|-+-++|-. ..+.|...|+..|+++.-+ .+.++.-+..++.++.. +
T Consensus 4 aig~Dhag~~-----lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~--------------------~- 57 (151)
T COG0698 4 AIGSDHAGYE-----LKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLN--------------------G- 57 (151)
T ss_pred EEEcCcccHH-----HHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHc--------------------C-
Confidence 3556666643 2357889999999876532 12333334444433321 1
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
...+||+=||||.+..-+.+
T Consensus 58 ----------~~d~GIliCGTGiG~~iaAN 77 (151)
T COG0698 58 ----------EADLGILICGTGIGMSIAAN 77 (151)
T ss_pred ----------CCCeeEEEecCChhHHHHhh
Confidence 35678888888888877764
No 477
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=25.81 E-value=3.2e+02 Score=28.30 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE
Q 014455 92 KRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (424)
Q Consensus 92 ~~~w~~~~~~~~~~-~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v 146 (424)
...+.+.+.+.++. .-+.+.+-|++.+..|.+. ..+.++|+..|+++..
T Consensus 153 ~~~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~------~~~~~il~~lg~~v~~ 202 (461)
T cd05800 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGA------GYLEELLRGAGVDVEE 202 (461)
T ss_pred HHHHHHHHHHHhChhhhhcCCceEEEeCCCCCcH------HHHHHHHHHcCCCEEE
Confidence 35577777766532 1123467889998887653 2456788888887643
No 478
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=25.66 E-value=2.6e+02 Score=27.65 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCch-----HHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-----l~evvngL~~ 188 (424)
..+..+|++.|+++.... ...+....+..+++..+++|.||..||=|. ..|++..+.+
T Consensus 178 ~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~lg~ 242 (312)
T PRK03604 178 KLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPLLE 242 (312)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHhcC
Confidence 478899999998765432 344444444444443357999999999663 4555555543
No 479
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=25.61 E-value=1.9e+02 Score=27.15 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=36.1
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (424)
++..|.|.++|-||..- .-.+.-.|.+.|..+-++-+...+++..+..
T Consensus 2 ~iI~v~n~KGGvGKTT~--a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTA--LMGLCAALASDGKRVALFEADENRPLTRWKE 49 (231)
T ss_pred eEEEEECCCCCccHHHH--HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHH
Confidence 57788999999998752 2467788888888888888877777665553
No 480
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=25.59 E-value=6.4e+02 Score=24.82 Aligned_cols=99 Identities=11% Similarity=0.127 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (424)
+.++...+.+++.+..+ + +|+=..|.++. ..+...|.+......++.|+.++.+.- ....+..+..++
T Consensus 16 ~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~ 91 (299)
T PLN02516 16 AIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGS----RKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHE 91 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666666654432 2 34333444543 334456777778889999999876643 234555566666
Q ss_pred hcc-CCCceEEEE---cCCchHHHHHHHhhcCcCc
Q 014455 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLEREDW 192 (424)
Q Consensus 162 ~~~-~~~d~vV~v---GGDGTl~evvngL~~~~~~ 192 (424)
+.. ...++|++- -..-.-+++++.+--..|-
T Consensus 92 lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDV 126 (299)
T PLN02516 92 LNANPDVHGILVQLPLPKHINEEKILNEISLEKDV 126 (299)
T ss_pred HhCCCCCCeEEEecCCCCCcCHHHHHhccCccccc
Confidence 643 345677653 2344456677777555443
No 481
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=25.54 E-value=2.1e+02 Score=23.88 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
.+.++.||..++. ++....|+++|++++++
T Consensus 2 ~itiy~~p~C~t~-------rka~~~L~~~gi~~~~~ 31 (117)
T COG1393 2 MITIYGNPNCSTC-------RKALAWLEEHGIEYTFI 31 (117)
T ss_pred eEEEEeCCCChHH-------HHHHHHHHHcCCCcEEE
Confidence 3678889998753 35678899999999765
No 482
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=25.53 E-value=3.3e+02 Score=21.25 Aligned_cols=68 Identities=12% Similarity=0.065 Sum_probs=40.5
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 99 ~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
+++++..+..|-.+.+|+.|..+.-+... ..+..+.+.. ++++.++... +..+++++......-.+++
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~---~~~~~l~~~~~~i~~~~vd~~---~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVV---QALNLMAVLNPNIEHEMIDGA---LFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHH---HHHHHHHHHCCCceEEEEEhH---hCHHHHHHcCCccCCEEEE
Confidence 45666677889999999999988765432 2233333333 4666555432 3345666665545555554
No 483
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=25.52 E-value=1e+02 Score=26.80 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=25.8
Q ss_pred CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 150 TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 150 ~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
.+..+..++.+. .|.||.-||=||+.|++. ...|+-+||.-.
T Consensus 61 ~~~~~m~~~m~~-----aDlvIs~aG~~Ti~E~l~-----------~g~P~I~ip~~~ 102 (167)
T PF04101_consen 61 GFVDNMAELMAA-----ADLVISHAGAGTIAEALA-----------LGKPAIVIPLPG 102 (167)
T ss_dssp CSSSSHHHHHHH-----HSEEEECS-CHHHHHHHH-----------CT--EEEE--TT
T ss_pred echhhHHHHHHH-----cCEEEeCCCccHHHHHHH-----------cCCCeeccCCCC
Confidence 344444555554 478999999999999875 267887888765
No 484
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.52 E-value=2.7e+02 Score=25.04 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=28.7
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
+|+|--+|.- ..+...|++.|++++++.. .. + .+++|.||+-||
T Consensus 2 ~i~d~g~~~~-------~~~~~~l~~~g~~v~v~~~--~~-------~--l~~~d~iiipG~ 45 (198)
T cd01748 2 AIIDYGMGNL-------RSVANALERLGAEVIITSD--PE-------E--ILSADKLILPGV 45 (198)
T ss_pred EEEeCCCChH-------HHHHHHHHHCCCeEEEEcC--hH-------H--hccCCEEEECCC
Confidence 5677655532 3577889999988776542 11 2 246999999665
No 485
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.43 E-value=3e+02 Score=25.30 Aligned_cols=48 Identities=8% Similarity=0.167 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCc
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+...+++.|+++.+..+.+..+ ..++.+.+...+.|+||+.+-+-
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (263)
T cd06280 18 SRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTRA 66 (263)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3577888899999887765554322 22344566666899999988653
No 486
>PRK04280 arginine repressor; Provisional
Probab=25.32 E-value=1.1e+02 Score=26.73 Aligned_cols=48 Identities=19% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCe-----EEEEEcCChhhHHHHHHHhccCC-CceEEEEcCCchH
Q 014455 132 DVKPLLEDANIQ-----FTVQETTQQLHAKEIVKVLDLSK-YDGIVCVSGDGIL 179 (424)
Q Consensus 132 ~v~~~l~~ag~~-----~~v~~T~~~~~a~~l~~~~~~~~-~d~vV~vGGDGTl 179 (424)
++..+|...-.+ .-++.-+.||.|.-++..++..+ .+.+-.++||-|+
T Consensus 74 ~l~~~~~~~v~sv~~~~~~vvikT~pG~A~~va~~iD~~~~~eI~GTIAGdDTi 127 (148)
T PRK04280 74 KLKRALMDSFVKIDGAGNLLVLKTLPGNANSIGALIDNLDWDEILGTICGDDTC 127 (148)
T ss_pred HHHHHHHHHEEEEeeeCCEEEEEcCCChHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 555555544332 23455667899999998887644 4566688899875
No 487
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=25.18 E-value=3.5e+02 Score=28.11 Aligned_cols=80 Identities=20% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-c--------C--ChhhHHHHH
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T--------T--QQLHAKEIV 159 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T--------~--~~~~a~~l~ 159 (424)
....|.+.+.+.++. .+-+.+-|++.|..|.+. ..+.++|++.|+++.... . + .+....++.
T Consensus 146 ~~~~Y~~~l~~~i~~-~~~~~lkIvvD~~~G~~~------~~~~~ll~~lG~~v~~l~~~~~~~~~~~~~~~~~~l~~l~ 218 (459)
T cd03088 146 AADAYIARYTDFFGA-GALKGLRIGVYQHSSVGR------DLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAA 218 (459)
T ss_pred HHHHHHHHHHHHhCc-cccCCCEEEEECCCCCHH------HHHHHHHHHcCCeEEEeCCCCCCCCCCCCcCCHHHHHHHH
Confidence 345677777666542 122468899999887653 246778888888765432 0 1 112223333
Q ss_pred HHhccCCCceEEEEcCCc
Q 014455 160 KVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 160 ~~~~~~~~d~vV~vGGDG 177 (424)
+.+...+.|..++.-|||
T Consensus 219 ~~v~~~~adlGia~D~Dg 236 (459)
T cd03088 219 AWAAEHGLDAIVSTDGDG 236 (459)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 333334567777777776
No 488
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=25.16 E-value=76 Score=32.56 Aligned_cols=32 Identities=34% Similarity=0.602 Sum_probs=27.8
Q ss_pred cCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 164 LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 164 ~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
..+.|++|+-||=||+.|.+. ..+|+-++|.+
T Consensus 298 l~~ad~vI~hGG~gtt~eaL~-----------~gvP~vv~P~~ 329 (406)
T COG1819 298 LPRADAVIHHGGAGTTSEALY-----------AGVPLVVIPDG 329 (406)
T ss_pred hhhcCEEEecCCcchHHHHHH-----------cCCCEEEecCC
Confidence 357899999999999999875 37999999997
No 489
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.03 E-value=6.3e+02 Score=24.71 Aligned_cols=97 Identities=9% Similarity=0.127 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhhcCCCcEE-EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhcc-C
Q 014455 91 SKRLWCEKLRDFIDSFGRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-S 165 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~~r~~~~-~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~-~ 165 (424)
.|+.-.+.+++.+...++..++ .|.++ ...+...|.+.-....++.|+.++.+.-. ...+..+..+++.. .
T Consensus 8 iA~~i~~~~k~~v~~l~~~P~LaiI~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~ 83 (287)
T PRK14181 8 AAEHILATIKENISASSTAPGLAVVLIG----NDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDP 83 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455556666666554443444 44444 33455567777788899999999876542 33455566666653 3
Q ss_pred CCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 166 KYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 166 ~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
..|+|++- -+.=.-+++++.+--..|
T Consensus 84 ~V~GIlvqlPlP~~i~~~~i~~~I~p~KD 112 (287)
T PRK14181 84 NIHGILVQLPLPKHLDAQAILQAISPDKD 112 (287)
T ss_pred CCCeEEEcCCCCCCcCHHHHHhccCcccC
Confidence 46676653 233344556666654443
No 490
>PRK00170 azoreductase; Reviewed
Probab=24.65 E-value=3.1e+02 Score=24.47 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=22.4
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhc--CCeEEEEE
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQE 148 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~a--g~~~~v~~ 148 (424)
+|+++|. .|....+...++. +.+...++++ +.+++++.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~-~~~~~~l~~~~~~~~v~~~d 42 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLG-DAFIEAYKEAHPDDEVTVRD 42 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHH-HHHHHHHHHhCCCCeEEEEE
Confidence 4565555 6665434444433 5677777777 77776553
No 491
>PRK03946 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=24.54 E-value=1.2e+02 Score=29.94 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=33.3
Q ss_pred cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHh----cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED----ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~----ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
+..||=...=+|||+|.+----.=+..|.|.+++ .|+++. . .|--|-.+-......+||+||++
T Consensus 175 l~~PrIaV~gLNPHAGE~G~~G~EE~iI~PAi~~~~~~~g~~~~--~--GP~paDt~F~~~~~~~~D~vlaM 242 (307)
T PRK03946 175 TKFKKIGVLGLNPHAGDNGVIGGEEEEIKKAIKKANQFLGFEIF--F--GPLVPDSAFTPNKRKKFNYYVAM 242 (307)
T ss_pred hcCCCEEEEeeCCCCCCCCCCCcchHHHHHHHHHHHHhcCCCcc--c--CCcCchhhcccccccCCCEEEEC
Confidence 3346544555799999743210011145565554 255432 1 33333344444445689999974
No 492
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=24.50 E-value=4e+02 Score=23.66 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhhcC--CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEE
Q 014455 94 LWCEKLRDFIDSFG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 94 ~w~~~~~~~~~~~~--r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV 171 (424)
...+.+.+.+.... +| -.++++-.+++.+..... +++...|++.| ++++..+ .....+.++.+ .+.+.||
T Consensus 86 ~~~~~~~~~~~~~~~~~p--~i~~i~R~~~~~R~i~Ne-~el~~~l~~~~--~~~v~~~-~~s~~eqv~~~--~~a~vii 157 (206)
T PF04577_consen 86 ALRDRIRRKLNLPPPKRP--RILYISRRKSGSRRILNE-DELLEILKKYG--FEVVDPE-DLSFEEQVKLF--ASAKVII 157 (206)
T ss_pred HHHHHHHHHhCCcccCCC--eEEEEecCCCCCCcCcCH-HHHHHHHhhCC--eEEEeCC-CCCHHHHHHHh--cCCCEEE
Confidence 44555656554433 34 445666633333332223 57788888777 4444444 34466666655 3789999
Q ss_pred EEcCCchHHHHHHHhhcCc
Q 014455 172 CVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~~ 190 (424)
..-|-|. .|.++..+
T Consensus 158 g~hGs~l----~n~~F~~~ 172 (206)
T PF04577_consen 158 GPHGSAL----TNLLFMPP 172 (206)
T ss_pred ecCchHh----heeeecCC
Confidence 8888775 55566553
No 493
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=24.40 E-value=2.6e+02 Score=24.34 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=42.2
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCc
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~ 190 (424)
+|-+-++|- .+++.++..|++.|+++.=+- +.+++-+..+++.+. ..
T Consensus 4 ~igsDhaG~-----~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~------------------------~~- 53 (141)
T PRK12613 4 ILGADAHGN-----ALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVN------------------------EA- 53 (141)
T ss_pred EEEeCcchH-----HHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHH------------------------cC-
Confidence 344555553 244688999999998764322 344554555444432 21
Q ss_pred CcccccCCcEEEecCCChhhhhhhhc
Q 014455 191 DWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 191 ~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
....||+=+|||.+++-..+
T Consensus 54 ------e~~~GIliCGtGiG~siaAN 73 (141)
T PRK12613 54 ------EGRLGIMVDAYGAGPFMVAT 73 (141)
T ss_pred ------CCceEEEEcCCCHhHhhhhh
Confidence 35678999999998887765
No 494
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=24.36 E-value=3.5e+02 Score=28.07 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v 146 (424)
...+.+.+.+.++. .+-+.+-|+++|..|.+.. .+ ..+.++|++.|+++++
T Consensus 152 ~~~Yi~~l~~~id~-~~~~~lkVvvD~~~G~~~~--~~-~~l~~~l~~lG~~v~v 202 (456)
T PRK15414 152 RDAYVDHLFGYINV-KNLTPLKLVINSGNGAAGP--VV-DAIEARFKALGAPVEL 202 (456)
T ss_pred HHHHHHHHHHhccc-ccCCCCEEEEECCCCcchh--hH-HHHHHHHHhcCCCeEE
Confidence 45677777666532 1225788999998887643 23 3454568888875544
No 495
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.30 E-value=4.6e+02 Score=24.23 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCeEEEEEc---C--ChhhHHHHHHHhccCCCceEEEEcCCchH-HHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQET---T--QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T---~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvngL~~~~~~~~~~~~plgii 203 (424)
+.+...+++.|...-+..+ . .+....++.+.+.. +.|+|++++.+++. .+.++.+.+. .+|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~-------~ipvV~~ 89 (275)
T cd06307 19 AALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAAA-------GVPVVTL 89 (275)
T ss_pred HHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHC-------CCcEEEE
Confidence 4566667766643333222 1 22323345555555 89999999988764 4677777654 5666554
No 496
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=24.25 E-value=1.4e+02 Score=28.09 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=36.4
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.+.++++++...+.|+|++.|=||.=.|-+..++.+=. ...+|+-+.| |+.+.+..
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik---~~~lPvilfp-~~~~~i~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALR---RYGLPIILFP-SNPTNVSR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHh---ccCCCEEEeC-CCccccCc
Confidence 34456777777899999999999875554444433210 1259999999 44444433
No 497
>PRK06455 riboflavin synthase; Provisional
Probab=24.14 E-value=3.8e+02 Score=23.73 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=34.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhc--CCeEEEEEcCChhhHHHHHHHhc-cCCCceEEEEc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQLHAKEIVKVLD-LSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a--g~~~~v~~T~~~~~a~~l~~~~~-~~~~d~vV~vG 174 (424)
+|+.|+.-.++-. ... +-....|++. +.+++++.....-+.--.++.+. ..+||+||+.|
T Consensus 2 ~kigIV~s~fn~~----~L~-~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG 64 (155)
T PRK06455 2 MKIGIADTTFARV----DMG-SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALG 64 (155)
T ss_pred cEEEEEEEecchH----HHH-HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4666666444432 122 3455666663 45666665555556555555554 35799999776
No 498
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.14 E-value=6.1e+02 Score=24.75 Aligned_cols=98 Identities=14% Similarity=0.160 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhcc
Q 014455 91 SKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL 164 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~~---~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~ 164 (424)
.++...+.+++.+... ++..++.+|.= |...+...|.+......++.|++++.+.-. ...+..+..+++..
T Consensus 9 va~~i~~~l~~~v~~l~~~g~~P~Laii~v---g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 9 VSKKILADLKQTVAKLAQQDVTPTLAVVLV---GSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEe---CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555565554432 23334544431 334455578778888899999998876432 23344555555543
Q ss_pred -CCCceEEEE---cCCchHHHHHHHhhcCcC
Q 014455 165 -SKYDGIVCV---SGDGILVEVVNGLLERED 191 (424)
Q Consensus 165 -~~~d~vV~v---GGDGTl~evvngL~~~~~ 191 (424)
...|+|++- -..=.-.++++.+--..|
T Consensus 86 D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KD 116 (282)
T PRK14169 86 DPDVDAILVQLPLPAGLDEQAVIDAIDPDKD 116 (282)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHhhcCcccC
Confidence 346777653 233444556666654443
No 499
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.90 E-value=1.8e+02 Score=23.21 Aligned_cols=73 Identities=10% Similarity=0.212 Sum_probs=42.0
Q ss_pred CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcE
Q 014455 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (424)
Q Consensus 121 G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~pl 200 (424)
|.|-+...+.++++..+++.|+++++..+.... + ... ..++|.|++.-= +..-.+.+.+.- ...++|+
T Consensus 7 g~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~-~---~~~--~~~~Diil~~Pq---v~~~~~~i~~~~---~~~~~pv 74 (96)
T cd05564 7 SAGMSTSILVKKMKKAAEKRGIDAEIEAVPESE-L---EEY--IDDADVVLLGPQ---VRYMLDEVKKKA---AEYGIPV 74 (96)
T ss_pred CCCchHHHHHHHHHHHHHHCCCceEEEEecHHH-H---HHh--cCCCCEEEEChh---HHHHHHHHHHHh---ccCCCcE
Confidence 334444456679999999999998887665432 2 122 247887665421 112222222110 0137899
Q ss_pred EEecC
Q 014455 201 GVVPA 205 (424)
Q Consensus 201 giiP~ 205 (424)
.+||.
T Consensus 75 ~~I~~ 79 (96)
T cd05564 75 AVIDM 79 (96)
T ss_pred EEcCh
Confidence 99996
No 500
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=23.90 E-value=3.7e+02 Score=25.74 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=40.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCC
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
+.+.+.+|+ |.-...-...+. +.+...+.+.|+.+.+..+.. +....+..+.+...+.|++|+.+.+
T Consensus 58 ~~~~Ig~i~-~~~~~~~~~~~~-~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~~~~ 125 (311)
T TIGR02405 58 SDKVVAVIV-SRLDSPSENLAV-SGMLPVFYTAGYDPIIMESQFSPQLTNEHLSVLQKRNVDGVILFGFT 125 (311)
T ss_pred CCCEEEEEe-CCcccccHHHHH-HHHHHHHHHCCCeEEEecCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 445677777 322111112233 578888999998877665543 2233344555555679999998765
Done!