Query 014455
Match_columns 424
No_of_seqs 365 out of 1472
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:53:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 4.9E-47 1.7E-51 371.5 22.3 253 107-423 6-260 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 6.6E-44 2.3E-48 354.1 24.2 253 109-423 24-278 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 5.6E-42 1.9E-46 339.5 19.1 250 108-423 28-279 (332)
4 2an1_A Putative kinase; struct 99.2 4E-12 1.4E-16 123.0 4.6 113 109-238 5-122 (292)
5 1yt5_A Inorganic polyphosphate 99.2 3.2E-11 1.1E-15 114.6 9.3 99 110-238 1-99 (258)
6 1u0t_A Inorganic polyphosphate 99.1 7E-11 2.4E-15 115.1 8.2 114 109-239 4-135 (307)
7 2i2c_A Probable inorganic poly 99.1 3.4E-10 1.2E-14 108.3 9.2 95 110-238 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 98.3 4.7E-07 1.6E-11 90.4 4.7 114 107-238 39-174 (388)
9 1z0s_A Probable inorganic poly 97.3 0.0006 2E-08 64.8 8.4 95 108-234 28-122 (278)
10 3pfn_A NAD kinase; structural 96.4 0.012 4E-07 58.0 9.5 117 103-237 32-166 (365)
11 1o2d_A Alcohol dehydrogenase, 94.0 0.34 1.2E-05 47.7 11.3 102 99-206 32-149 (371)
12 3ce9_A Glycerol dehydrogenase; 93.6 0.2 6.8E-06 48.9 8.8 86 110-208 35-123 (354)
13 1sg6_A Pentafunctional AROM po 92.7 0.5 1.7E-05 46.8 10.2 94 109-212 36-148 (393)
14 1jq5_A Glycerol dehydrogenase; 92.5 0.16 5.4E-06 50.0 6.1 84 110-205 32-118 (370)
15 3okf_A 3-dehydroquinate syntha 92.5 0.65 2.2E-05 46.0 10.5 88 108-205 61-157 (390)
16 3bfj_A 1,3-propanediol oxidore 92.1 0.72 2.5E-05 45.5 10.4 92 110-205 34-142 (387)
17 3uhj_A Probable glycerol dehyd 91.9 0.22 7.5E-06 49.4 6.3 84 110-206 53-139 (387)
18 3ox4_A Alcohol dehydrogenase 2 90.8 0.71 2.4E-05 45.5 8.8 93 109-206 31-139 (383)
19 1ta9_A Glycerol dehydrogenase; 90.8 0.39 1.3E-05 48.5 6.9 83 110-205 92-177 (450)
20 1vlj_A NADH-dependent butanol 90.5 0.72 2.5E-05 45.9 8.6 92 110-205 44-151 (407)
21 3ors_A N5-carboxyaminoimidazol 90.3 2.4 8.3E-05 36.4 10.4 73 111-188 5-81 (163)
22 4grd_A N5-CAIR mutase, phospho 89.2 2.8 9.7E-05 36.3 10.0 74 110-188 13-90 (173)
23 1rrm_A Lactaldehyde reductase; 89.2 0.47 1.6E-05 46.8 6.0 92 109-205 31-140 (386)
24 3hl0_A Maleylacetate reductase 88.5 0.45 1.6E-05 46.5 5.2 82 109-205 34-119 (353)
25 3qbe_A 3-dehydroquinate syntha 88.4 2.9 0.0001 40.9 11.0 85 110-205 44-137 (368)
26 1oj7_A Hypothetical oxidoreduc 88.4 0.87 3E-05 45.2 7.3 90 110-205 51-159 (408)
27 3lp6_A Phosphoribosylaminoimid 88.1 3.4 0.00012 35.9 9.8 73 111-188 9-85 (174)
28 3oow_A Phosphoribosylaminoimid 88.0 4.3 0.00015 35.0 10.3 73 111-188 7-83 (166)
29 3kuu_A Phosphoribosylaminoimid 87.7 4.5 0.00015 35.1 10.3 74 110-188 13-90 (174)
30 3jzd_A Iron-containing alcohol 87.7 0.44 1.5E-05 46.6 4.5 82 109-205 36-121 (358)
31 1kq3_A Glycerol dehydrogenase; 87.0 0.37 1.2E-05 47.5 3.5 84 110-205 42-126 (376)
32 3trh_A Phosphoribosylaminoimid 86.5 4 0.00014 35.2 9.3 73 111-188 8-84 (169)
33 2gru_A 2-deoxy-scyllo-inosose 83.5 5.3 0.00018 39.0 10.0 86 109-205 34-128 (368)
34 1o4v_A Phosphoribosylaminoimid 83.1 7.9 0.00027 33.8 9.7 73 111-188 15-91 (183)
35 1xmp_A PURE, phosphoribosylami 82.8 6.9 0.00023 33.8 9.1 73 111-188 13-89 (170)
36 1u11_A PURE (N5-carboxyaminoim 81.7 9.1 0.00031 33.4 9.6 73 111-188 23-99 (182)
37 1xah_A Sadhqs, 3-dehydroquinat 81.7 3.6 0.00012 39.8 8.0 85 110-206 32-125 (354)
38 4b4k_A N5-carboxyaminoimidazol 81.3 9.6 0.00033 33.2 9.5 72 112-188 25-100 (181)
39 3clh_A 3-dehydroquinate syntha 80.8 1.6 5.4E-05 42.3 5.0 87 109-205 26-119 (343)
40 3jy6_A Transcriptional regulat 80.5 14 0.00047 33.4 11.2 88 107-205 5-93 (276)
41 3iv7_A Alcohol dehydrogenase I 80.2 0.77 2.6E-05 45.0 2.5 79 110-205 38-120 (364)
42 3f6r_A Flavodoxin; FMN binding 79.1 5.2 0.00018 33.0 7.2 88 109-206 1-94 (148)
43 3l49_A ABC sugar (ribose) tran 76.4 15 0.00051 33.3 10.2 90 108-206 4-95 (291)
44 3rg8_A Phosphoribosylaminoimid 75.5 17 0.00059 31.0 9.3 73 111-188 4-81 (159)
45 3o74_A Fructose transport syst 75.4 8 0.00027 34.7 7.9 87 109-204 2-89 (272)
46 3m9w_A D-xylose-binding peripl 75.3 21 0.0007 32.9 11.0 87 110-205 3-91 (313)
47 3l6u_A ABC-type sugar transpor 75.1 14 0.00047 33.6 9.6 90 107-205 6-97 (293)
48 2fep_A Catabolite control prot 74.5 16 0.00056 33.3 9.9 88 107-204 14-102 (289)
49 3g1w_A Sugar ABC transporter; 73.9 13 0.00045 34.0 9.2 90 108-206 3-95 (305)
50 1pfk_A Phosphofructokinase; tr 73.7 5.4 0.00019 38.2 6.4 52 154-213 82-133 (320)
51 3tb6_A Arabinose metabolism tr 73.1 22 0.00076 32.1 10.5 86 110-204 16-106 (298)
52 2h31_A Multifunctional protein 72.0 34 0.0012 33.9 11.8 74 110-188 266-344 (425)
53 2fqx_A Membrane lipoprotein TM 71.7 33 0.0011 32.0 11.6 88 109-204 4-93 (318)
54 3egc_A Putative ribose operon 71.7 13 0.00046 33.8 8.5 90 107-206 6-96 (291)
55 3h75_A Periplasmic sugar-bindi 71.7 24 0.00081 33.2 10.6 89 110-207 4-96 (350)
56 3lft_A Uncharacterized protein 71.4 19 0.00066 33.0 9.6 77 107-188 131-207 (295)
57 2rgy_A Transcriptional regulat 71.1 12 0.00041 34.2 8.1 88 107-204 6-97 (290)
58 2fvy_A D-galactose-binding per 71.1 25 0.00087 32.0 10.4 87 110-205 3-92 (309)
59 8abp_A L-arabinose-binding pro 70.9 22 0.00075 32.4 9.9 86 110-204 3-89 (306)
60 3rf7_A Iron-containing alcohol 70.8 11 0.00037 36.9 8.0 87 110-205 54-159 (375)
61 3gbv_A Putative LACI-family tr 70.5 15 0.00053 33.3 8.7 91 107-205 6-102 (304)
62 1pyo_A Caspase-2; apoptosis, c 70.5 21 0.00073 30.6 8.9 63 101-163 24-93 (167)
63 2lnd_A De novo designed protei 70.2 19 0.00064 27.0 7.2 58 99-162 40-98 (112)
64 2iks_A DNA-binding transcripti 70.0 17 0.00059 33.1 8.9 89 107-204 18-107 (293)
65 3brq_A HTH-type transcriptiona 69.4 28 0.00095 31.4 10.2 88 107-204 17-108 (296)
66 2fn9_A Ribose ABC transporter, 69.1 20 0.00068 32.4 9.2 86 110-204 3-90 (290)
67 3d8u_A PURR transcriptional re 68.5 17 0.00059 32.5 8.5 86 108-203 2-88 (275)
68 3k9c_A Transcriptional regulat 68.3 26 0.00088 31.9 9.7 86 107-204 10-95 (289)
69 2iuf_A Catalase; oxidoreductas 68.0 2.4 8.1E-05 44.9 2.6 89 110-208 530-643 (688)
70 2ywx_A Phosphoribosylaminoimid 67.9 40 0.0014 28.6 9.7 60 126-188 12-74 (157)
71 4h1h_A LMO1638 protein; MCCF-l 67.9 6 0.00021 37.9 5.3 67 112-179 14-92 (327)
72 1ujn_A Dehydroquinate synthase 67.9 11 0.00038 36.3 7.3 84 109-205 28-118 (348)
73 3k4h_A Putative transcriptiona 67.9 16 0.00053 33.2 8.1 89 107-204 6-99 (292)
74 3n7t_A Macrophage binding prot 67.6 28 0.00097 31.7 9.7 95 109-207 9-148 (247)
75 2x7x_A Sensor protein; transfe 67.5 27 0.00092 32.4 9.9 87 108-204 5-94 (325)
76 3qk7_A Transcriptional regulat 67.5 13 0.00043 34.2 7.4 89 107-204 4-95 (294)
77 1zxx_A 6-phosphofructokinase; 67.3 6.1 0.00021 37.8 5.2 53 153-213 80-132 (319)
78 3c3k_A Alanine racemase; struc 67.1 30 0.001 31.3 9.9 86 107-203 6-92 (285)
79 3o1i_D Periplasmic protein TOR 66.4 13 0.00043 34.0 7.1 87 107-203 3-93 (304)
80 3kjx_A Transcriptional regulat 66.0 46 0.0016 31.0 11.3 86 108-203 67-153 (344)
81 2qh8_A Uncharacterized protein 65.7 23 0.00078 32.6 8.9 76 107-187 138-213 (302)
82 3l7n_A Putative uncharacterize 65.4 9.8 0.00034 34.4 6.0 57 110-178 1-57 (236)
83 3snr_A Extracellular ligand-bi 65.3 24 0.00082 32.8 9.1 79 108-190 134-214 (362)
84 3rpe_A MDAB, modulator of drug 65.0 10 0.00035 34.2 5.9 45 106-151 22-70 (218)
85 3dbi_A Sugar-binding transcrip 64.9 40 0.0014 31.4 10.5 89 107-204 59-150 (338)
86 3lkb_A Probable branched-chain 64.3 53 0.0018 31.1 11.5 100 82-189 120-221 (392)
87 3uug_A Multiple sugar-binding 63.7 33 0.0011 31.6 9.7 88 109-205 3-92 (330)
88 2hig_A 6-phospho-1-fructokinas 63.6 6 0.0002 40.1 4.5 95 110-212 130-233 (487)
89 3p45_A Caspase-6; protease, hu 63.4 22 0.00074 31.0 7.5 69 103-171 37-115 (179)
90 2hsg_A Glucose-resistance amyl 63.2 37 0.0013 31.5 9.9 88 107-204 58-146 (332)
91 3h5o_A Transcriptional regulat 63.2 43 0.0015 31.2 10.4 87 107-203 60-147 (339)
92 1dbq_A Purine repressor; trans 62.7 42 0.0015 30.1 10.0 88 108-204 6-94 (289)
93 3fni_A Putative diflavin flavo 62.2 22 0.00076 29.8 7.3 61 109-174 4-64 (159)
94 3e3m_A Transcriptional regulat 61.9 43 0.0015 31.5 10.2 87 107-203 68-155 (355)
95 3clk_A Transcription regulator 61.6 21 0.00072 32.4 7.7 89 107-205 6-96 (290)
96 3loq_A Universal stress protei 61.4 95 0.0032 28.1 12.4 70 131-207 217-292 (294)
97 1vhq_A Enhancing lycopene bios 61.3 30 0.001 30.9 8.5 101 108-215 5-150 (232)
98 4eys_A MCCC family protein; MC 61.1 12 0.00041 36.2 6.0 73 112-186 7-93 (346)
99 3lkv_A Uncharacterized conserv 60.8 36 0.0012 31.5 9.3 85 95-187 129-213 (302)
100 3td9_A Branched chain amino ac 60.7 36 0.0012 31.9 9.4 79 108-189 148-227 (366)
101 4evq_A Putative ABC transporte 60.6 45 0.0015 31.2 10.1 78 108-189 150-229 (375)
102 1jx6_A LUXP protein; protein-l 60.3 82 0.0028 29.1 11.9 76 110-188 44-126 (342)
103 3dfz_A SIRC, precorrin-2 dehyd 60.3 63 0.0021 29.0 10.3 99 109-216 31-158 (223)
104 1qtn_A Caspase-8; apoptosis, d 60.1 36 0.0012 29.0 8.3 66 106-171 19-101 (164)
105 2vk2_A YTFQ, ABC transporter p 60.0 26 0.00089 32.1 8.1 87 109-204 2-90 (306)
106 3ej6_A Catalase-3; heme, hydro 59.9 8.6 0.00029 40.6 5.0 85 110-206 538-639 (688)
107 4a3s_A 6-phosphofructokinase; 59.1 11 0.00038 36.0 5.3 50 156-213 83-132 (319)
108 3bil_A Probable LACI-family tr 59.0 34 0.0011 32.2 8.9 87 108-204 65-152 (348)
109 3rot_A ABC sugar transporter, 58.8 26 0.00089 31.9 7.8 67 131-204 23-93 (297)
110 3e61_A Putative transcriptiona 58.7 33 0.0011 30.7 8.4 88 107-206 6-95 (277)
111 1mkz_A Molybdenum cofactor bio 58.7 51 0.0017 28.1 9.1 77 109-188 10-96 (172)
112 1rw7_A YDR533CP; alpha-beta sa 58.4 34 0.0012 30.8 8.4 46 165-214 97-147 (243)
113 3kkl_A Probable chaperone prot 58.4 45 0.0015 30.2 9.2 40 165-207 97-141 (244)
114 1oi4_A Hypothetical protein YH 58.3 11 0.00039 32.7 4.9 95 107-214 21-134 (193)
115 2rjo_A Twin-arginine transloca 58.1 29 0.001 32.2 8.2 89 107-204 3-95 (332)
116 3eaf_A ABC transporter, substr 57.8 64 0.0022 30.5 10.8 79 108-189 140-222 (391)
117 2o20_A Catabolite control prot 57.4 43 0.0015 31.1 9.2 88 107-204 61-149 (332)
118 2h54_A Caspase-1; allosteric s 57.1 20 0.00068 31.1 6.2 69 110-178 43-120 (178)
119 3e4c_A Caspase-1; zymogen, inf 57.0 36 0.0012 32.1 8.5 119 94-212 42-189 (302)
120 3opy_A 6-phosphofructo-1-kinas 56.9 12 0.00042 41.0 5.7 60 154-214 676-735 (989)
121 3brs_A Periplasmic binding pro 56.7 28 0.00096 31.3 7.6 88 108-204 4-97 (289)
122 3gv0_A Transcriptional regulat 56.7 38 0.0013 30.6 8.5 89 107-204 6-96 (288)
123 2dko_A Caspase-3; low barrier 56.3 31 0.0011 28.8 7.1 57 107-163 13-76 (146)
124 2q5c_A NTRC family transcripti 56.2 58 0.002 28.4 9.3 65 110-186 95-159 (196)
125 1tjy_A Sugar transport protein 56.0 30 0.001 32.0 7.9 86 110-204 4-92 (316)
126 2h3h_A Sugar ABC transporter, 54.6 44 0.0015 30.6 8.7 84 111-204 3-89 (313)
127 3kke_A LACI family transcripti 54.6 59 0.002 29.6 9.6 88 107-204 13-101 (303)
128 2a9v_A GMP synthase; structura 54.4 18 0.00063 32.0 5.7 58 108-181 12-70 (212)
129 1f4p_A Flavodoxin; electron tr 54.1 18 0.00062 29.4 5.3 85 110-208 1-95 (147)
130 3opy_B 6-phosphofructo-1-kinas 53.7 16 0.00054 40.0 5.9 59 155-214 651-709 (941)
131 2amj_A Modulator of drug activ 53.5 28 0.00094 30.6 6.7 60 110-172 13-76 (204)
132 3bbl_A Regulatory protein of L 53.2 30 0.001 31.3 7.2 65 131-203 28-93 (287)
133 3hcw_A Maltose operon transcri 52.3 23 0.0008 32.3 6.3 89 107-204 5-98 (295)
134 3hno_A Pyrophosphate-dependent 52.3 19 0.00065 35.7 5.9 60 152-213 90-149 (419)
135 3lop_A Substrate binding perip 51.6 56 0.0019 30.5 9.1 77 109-189 141-219 (364)
136 3o8l_A 6-phosphofructokinase, 51.5 15 0.0005 39.4 5.2 58 156-213 99-171 (762)
137 2ql9_A Caspase-7; cysteine pro 51.1 45 0.0016 28.7 7.4 58 106-163 40-104 (173)
138 4ehd_A Caspase-3; caspase, apo 50.5 26 0.00088 32.7 6.2 111 105-215 39-172 (277)
139 2lqo_A Putative glutaredoxin R 50.5 18 0.00062 27.6 4.3 35 129-163 16-50 (92)
140 3ksm_A ABC-type sugar transpor 50.5 43 0.0015 29.7 7.7 68 131-205 20-92 (276)
141 4e08_A DJ-1 beta; flavodoxin-l 50.2 20 0.0007 30.8 5.2 94 107-213 3-115 (190)
142 1qpz_A PURA, protein (purine n 50.1 95 0.0032 28.7 10.4 88 107-203 56-144 (340)
143 3o8l_A 6-phosphofructokinase, 50.0 16 0.00053 39.2 5.1 60 154-214 477-536 (762)
144 3huu_A Transcription regulator 50.0 32 0.0011 31.4 6.9 67 131-205 47-114 (305)
145 3hut_A Putative branched-chain 49.8 1.1E+02 0.0038 28.2 10.9 96 84-189 119-217 (358)
146 4dzz_A Plasmid partitioning pr 49.7 72 0.0025 27.0 8.8 47 110-158 1-47 (206)
147 3sg0_A Extracellular ligand-bi 49.4 88 0.003 29.2 10.1 78 108-189 158-237 (386)
148 1i1q_B Anthranilate synthase c 49.2 28 0.00096 30.0 6.0 61 111-181 2-62 (192)
149 2cof_A Protein KIAA1914; PH do 49.2 15 0.00052 28.3 3.8 28 79-106 76-103 (107)
150 3d02_A Putative LACI-type tran 49.2 68 0.0023 28.9 9.0 85 110-203 5-92 (303)
151 2qip_A Protein of unknown func 49.1 48 0.0016 27.9 7.3 56 132-189 65-131 (165)
152 1y5e_A Molybdenum cofactor bio 48.8 86 0.0029 26.5 8.9 77 108-187 12-98 (169)
153 3miz_A Putative transcriptiona 48.8 51 0.0017 29.9 8.1 71 107-178 11-82 (301)
154 3od5_A Caspase-6; caspase doma 48.5 41 0.0014 31.3 7.3 110 106-215 17-149 (278)
155 1t35_A Hypothetical protein YV 48.4 19 0.00066 31.5 4.7 47 153-206 20-67 (191)
156 3o8o_B 6-phosphofructokinase s 48.3 16 0.00053 39.3 4.7 58 155-213 473-530 (766)
157 3sbx_A Putative uncharacterize 48.3 16 0.00056 32.0 4.2 46 154-206 32-78 (189)
158 2pjk_A 178AA long hypothetical 48.3 70 0.0024 27.4 8.3 80 107-188 13-108 (178)
159 3ipc_A ABC transporter, substr 48.0 75 0.0026 29.4 9.3 77 109-189 138-216 (356)
160 2dri_A D-ribose-binding protei 47.7 73 0.0025 28.3 8.8 66 131-203 21-88 (271)
161 3o8o_A 6-phosphofructokinase s 47.7 21 0.00071 38.4 5.6 59 154-213 471-529 (787)
162 4eyg_A Twin-arginine transloca 47.5 81 0.0028 29.3 9.5 78 108-189 138-217 (368)
163 1wjm_A Beta-spectrin III; PH d 47.3 17 0.0006 28.6 4.0 27 80-106 93-119 (123)
164 2ab0_A YAJL; DJ-1/THIJ superfa 47.2 20 0.00067 31.5 4.6 98 109-214 2-116 (205)
165 1byk_A Protein (trehalose oper 47.1 63 0.0022 28.3 8.2 67 109-177 2-69 (255)
166 2c4w_A 3-dehydroquinate dehydr 46.9 73 0.0025 27.5 7.8 65 110-174 10-86 (176)
167 3lwz_A 3-dehydroquinate dehydr 46.6 80 0.0027 26.6 7.9 63 109-173 7-80 (153)
168 2iz6_A Molybdenum cofactor car 46.5 27 0.00094 30.2 5.3 46 154-206 33-79 (176)
169 1u5d_A SKAP55, SRC kinase-asso 46.5 14 0.00049 27.9 3.3 26 80-105 81-106 (108)
170 1usg_A Leucine-specific bindin 46.2 60 0.0021 29.8 8.2 98 84-189 117-216 (346)
171 1fy2_A Aspartyl dipeptidase; s 46.2 75 0.0025 28.4 8.5 69 108-188 30-99 (229)
172 2ejb_A Probable aromatic acid 46.0 57 0.0019 28.4 7.4 41 110-155 2-42 (189)
173 2q9u_A A-type flavoprotein; fl 45.9 1.1E+02 0.0036 29.5 10.3 74 108-187 255-334 (414)
174 3hly_A Flavodoxin-like domain; 45.8 43 0.0015 27.9 6.5 59 110-174 1-59 (161)
175 1jye_A Lactose operon represso 45.6 1.4E+02 0.0046 27.8 10.7 66 108-175 60-127 (349)
176 1mjh_A Protein (ATP-binding do 45.5 35 0.0012 27.8 5.8 68 132-206 87-160 (162)
177 2hqb_A Transcriptional activat 45.4 35 0.0012 31.4 6.4 88 108-203 4-93 (296)
178 3h11_B Caspase-8; cell death, 45.1 53 0.0018 30.3 7.4 113 103-215 10-153 (271)
179 1tq8_A Hypothetical protein RV 45.1 83 0.0028 25.9 8.2 69 131-206 84-159 (163)
180 1nw9_B Caspase 9, apoptosis-re 45.0 75 0.0026 29.3 8.5 109 106-214 17-156 (277)
181 3tla_A MCCF; serine protease, 44.8 28 0.00096 33.9 5.7 67 111-178 44-122 (371)
182 2p0d_A RHO GTPase-activating p 44.6 10 0.00036 30.7 2.2 27 80-106 100-126 (129)
183 1zl0_A Hypothetical protein PA 43.7 26 0.0009 33.2 5.2 65 112-179 19-94 (311)
184 3hs3_A Ribose operon repressor 43.6 45 0.0015 29.9 6.7 66 107-174 8-75 (277)
185 2zfz_A Arginine repressor; DNA 43.6 26 0.00087 26.0 4.0 47 133-179 6-58 (79)
186 3o8o_A 6-phosphofructokinase s 43.2 21 0.00071 38.4 4.7 57 157-213 90-161 (787)
187 1m72_A Caspase-1; caspase, cys 43.2 72 0.0025 29.4 8.1 108 106-213 28-157 (272)
188 3cxb_B Pleckstrin homology dom 43.1 17 0.00058 28.5 3.2 27 80-106 77-103 (112)
189 3jvd_A Transcriptional regulat 42.9 45 0.0015 31.1 6.8 67 107-175 62-128 (333)
190 2ioy_A Periplasmic sugar-bindi 42.8 98 0.0033 27.6 8.9 84 111-203 3-88 (283)
191 3o8o_B 6-phosphofructokinase s 42.7 33 0.0011 36.7 6.2 58 157-214 89-161 (766)
192 1jmv_A USPA, universal stress 42.6 42 0.0014 26.5 5.7 69 131-206 67-139 (141)
193 2rk3_A Protein DJ-1; parkinson 42.1 40 0.0014 29.1 5.8 97 109-214 3-115 (197)
194 2vvr_A Ribose-5-phosphate isom 41.6 67 0.0023 27.0 6.8 69 113-217 4-78 (149)
195 1uqr_A 3-dehydroquinate dehydr 41.6 1.5E+02 0.0052 24.9 8.8 45 130-175 32-76 (154)
196 1wl8_A GMP synthase [glutamine 41.4 1.2E+02 0.004 25.8 8.8 39 132-176 15-53 (189)
197 3opy_A 6-phosphofructo-1-kinas 41.3 17 0.00059 39.8 3.8 58 156-213 294-366 (989)
198 1czn_A Flavodoxin; FMN binding 41.2 54 0.0018 27.2 6.4 86 110-206 1-89 (169)
199 2j32_A Caspase-3; Pro-caspase3 41.2 84 0.0029 28.5 8.1 108 107-214 13-143 (250)
200 3s5p_A Ribose 5-phosphate isom 41.2 55 0.0019 28.0 6.2 70 110-216 22-97 (166)
201 3g85_A Transcriptional regulat 41.1 43 0.0015 30.1 6.1 89 107-204 9-98 (289)
202 2d9y_A Pleckstrin homology dom 41.0 20 0.00069 27.7 3.3 26 80-105 85-110 (117)
203 3gyb_A Transcriptional regulat 41.0 42 0.0014 30.0 6.0 68 108-178 4-71 (280)
204 2fp3_A Caspase NC; apoptosis, 40.9 63 0.0022 30.6 7.4 113 103-215 53-193 (316)
205 3n8k_A 3-dehydroquinate dehydr 40.7 68 0.0023 27.5 6.7 62 110-173 29-101 (172)
206 1ydh_A AT5G11950; structural g 40.7 27 0.00093 31.3 4.5 44 154-204 29-73 (216)
207 1ykg_A SIR-FP, sulfite reducta 40.5 18 0.00062 30.5 3.2 87 109-206 9-102 (167)
208 3rfq_A Pterin-4-alpha-carbinol 40.5 41 0.0014 29.3 5.5 58 131-188 52-116 (185)
209 1e5d_A Rubredoxin\:oxygen oxid 40.2 1.7E+02 0.0057 27.8 10.6 76 92-174 236-311 (402)
210 3hbm_A UDP-sugar hydrolase; PS 39.9 1E+02 0.0034 28.6 8.5 28 166-205 225-252 (282)
211 1fgy_A GRP1; PH domain, signal 39.7 24 0.0008 27.7 3.6 27 80-106 96-122 (127)
212 2uyg_A 3-dehydroquinate dehydr 39.5 94 0.0032 26.1 7.2 45 129-173 29-73 (149)
213 3u80_A 3-dehydroquinate dehydr 39.3 75 0.0026 26.7 6.6 64 109-173 4-77 (151)
214 3rcp_A Pleckstrin homology dom 39.3 22 0.00077 26.8 3.3 27 80-106 69-95 (103)
215 3op6_A Uncharacterized protein 39.2 25 0.00087 29.3 3.9 51 131-181 5-68 (152)
216 3m3p_A Glutamine amido transfe 39.1 40 0.0014 30.8 5.5 60 109-180 3-62 (250)
217 3kip_A 3-dehydroquinase, type 39.0 1.2E+02 0.0042 25.8 8.0 67 108-174 13-91 (167)
218 1qdl_B Protein (anthranilate s 39.0 48 0.0016 28.6 5.8 56 112-180 4-59 (195)
219 1eaz_A Tandem PH domain contai 38.9 26 0.00087 27.4 3.7 27 80-106 87-113 (125)
220 3pzy_A MOG; ssgcid, seattle st 38.6 44 0.0015 28.4 5.3 58 131-189 30-94 (164)
221 2f48_A Diphosphate--fructose-6 38.5 32 0.0011 35.4 5.1 102 109-213 104-211 (555)
222 2rlo_A Centaurin-gamma 1; spli 38.4 20 0.00067 28.7 2.9 25 80-104 100-124 (128)
223 4gi5_A Quinone reductase; prot 38.3 79 0.0027 29.3 7.5 39 108-148 21-60 (280)
224 2da0_A 130-kDa phosphatidylino 38.1 26 0.00089 27.2 3.6 26 80-105 77-102 (114)
225 1v5u_A SBF1, SET binding facto 38.1 21 0.0007 27.6 3.0 26 80-105 87-112 (117)
226 2qu7_A Putative transcriptiona 38.1 66 0.0023 28.8 6.9 68 108-178 7-75 (288)
227 2is8_A Molybdopterin biosynthe 37.9 43 0.0015 28.3 5.2 58 131-188 24-89 (164)
228 3en0_A Cyanophycinase; serine 37.8 35 0.0012 32.0 5.0 63 110-178 57-122 (291)
229 1u9c_A APC35852; structural ge 37.8 86 0.003 27.4 7.5 79 132-214 33-138 (224)
230 1pea_A Amidase operon; gene re 37.7 1.6E+02 0.0056 27.5 10.0 77 109-189 140-220 (385)
231 2ppw_A Conserved domain protei 37.5 74 0.0025 28.4 6.7 91 110-233 4-107 (216)
232 4e5s_A MCCFLIKE protein (BA_56 37.4 38 0.0013 32.3 5.2 67 111-178 13-91 (331)
233 2nn3_C Caspase-1; cysteine pro 37.4 75 0.0026 30.0 7.2 108 106-213 56-185 (310)
234 1v89_A Hypothetical protein KI 37.3 25 0.00086 27.1 3.4 27 79-105 87-113 (118)
235 1pls_A Pleckstrin homology dom 37.3 31 0.0011 26.5 3.9 26 80-105 77-102 (113)
236 2vzf_A NADH-dependent FMN redu 37.1 78 0.0027 27.1 6.9 94 109-206 2-111 (197)
237 1fao_A Dual adaptor of phospho 37.0 30 0.001 27.2 3.8 27 80-106 88-114 (126)
238 3sir_A Caspase; hydrolase; 2.6 36.8 56 0.0019 30.0 6.1 109 106-214 16-146 (259)
239 2vvp_A Ribose-5-phosphate isom 36.7 43 0.0015 28.6 4.9 84 114-233 7-101 (162)
240 3c5y_A Ribose/galactose isomer 36.6 42 0.0014 30.3 5.0 92 109-233 19-123 (231)
241 1gud_A ALBP, D-allose-binding 36.6 1.1E+02 0.0038 27.4 8.2 66 131-203 21-90 (288)
242 3r7f_A Aspartate carbamoyltran 36.5 1.5E+02 0.005 27.9 9.1 86 114-215 66-165 (304)
243 2d9x_A Oxysterol binding prote 36.5 28 0.00095 27.3 3.5 25 80-104 80-104 (120)
244 3h5l_A Putative branched-chain 36.4 1.5E+02 0.0052 28.1 9.7 103 83-189 135-243 (419)
245 3mt0_A Uncharacterized protein 36.4 1.5E+02 0.005 26.8 9.1 105 90-208 21-131 (290)
246 3sr3_A Microcin immunity prote 36.3 34 0.0012 32.8 4.7 66 112-178 15-92 (336)
247 2i5f_A Pleckstrin; PH domain, 36.3 24 0.00082 26.8 3.0 24 80-103 85-108 (109)
248 3he8_A Ribose-5-phosphate isom 36.1 56 0.0019 27.4 5.4 74 129-233 14-97 (149)
249 1rcu_A Conserved hypothetical 36.0 35 0.0012 30.0 4.4 46 153-205 45-90 (195)
250 3l4e_A Uncharacterized peptida 36.0 34 0.0012 30.2 4.4 71 110-187 28-98 (206)
251 1wgq_A FYVE, rhogef and PH dom 36.0 34 0.0012 26.1 3.9 26 79-104 78-103 (109)
252 3iwt_A 178AA long hypothetical 35.9 61 0.0021 27.5 5.9 57 131-187 43-107 (178)
253 4evm_A Thioredoxin family prot 35.9 1.4E+02 0.0048 22.5 9.4 91 80-178 25-116 (138)
254 1v95_A Nuclear receptor coacti 35.8 51 0.0017 27.0 5.0 70 107-185 6-75 (130)
255 2a33_A Hypothetical protein; s 35.8 33 0.0011 30.7 4.2 45 155-206 34-79 (215)
256 2lul_A Tyrosine-protein kinase 35.6 33 0.0011 28.9 4.1 27 80-106 97-123 (164)
257 3l18_A Intracellular protease 35.5 30 0.001 29.0 3.8 92 109-213 2-110 (168)
258 2p5m_A Arginine repressor; alp 35.4 22 0.00076 26.6 2.6 48 132-179 9-62 (83)
259 2pju_A Propionate catabolism o 35.1 63 0.0022 29.0 6.1 83 109-215 106-188 (225)
260 2i0f_A 6,7-dimethyl-8-ribityll 35.1 79 0.0027 26.8 6.3 96 110-208 13-123 (157)
261 2rsg_A Collagen type IV alpha- 35.1 14 0.00047 27.7 1.4 23 80-102 70-92 (94)
262 3opy_B 6-phosphofructo-1-kinas 34.9 19 0.00065 39.4 2.9 56 157-213 267-338 (941)
263 3ph3_A Ribose-5-phosphate isom 34.6 60 0.002 27.9 5.4 88 108-232 19-116 (169)
264 2dn6_A KIAA0640 protein; PH do 34.5 31 0.001 26.5 3.4 26 80-105 79-104 (115)
265 2q5c_A NTRC family transcripti 34.4 58 0.002 28.4 5.6 69 132-215 19-87 (196)
266 2g2c_A Putative molybdenum cof 34.3 44 0.0015 28.3 4.7 56 132-187 29-95 (167)
267 3zyw_A Glutaredoxin-3; metal b 34.2 69 0.0024 24.9 5.5 29 129-157 33-61 (111)
268 3lor_A Thiol-disulfide isomera 34.1 1.6E+02 0.0055 23.3 8.2 96 81-178 34-132 (160)
269 1t5b_A Acyl carrier protein ph 34.0 89 0.0031 26.4 6.8 39 110-149 2-43 (201)
270 3aj4_A Pleckstrin homology dom 33.9 29 0.001 26.6 3.2 24 80-103 87-110 (112)
271 3tem_A Ribosyldihydronicotinam 33.7 97 0.0033 27.6 7.1 38 110-149 2-40 (228)
272 3cwq_A Para family chromosome 33.6 1.2E+02 0.0041 26.1 7.7 72 112-187 2-89 (209)
273 3pp2_A RHO GTPase-activating p 33.4 30 0.001 27.6 3.3 25 80-104 99-123 (124)
274 3s3t_A Nucleotide-binding prot 33.1 1.7E+02 0.0059 22.8 9.4 66 132-204 73-146 (146)
275 4a6h_A Phosphatidylinositol 4, 32.5 32 0.0011 27.6 3.2 24 80-103 94-117 (120)
276 3lxy_A 4-hydroxythreonine-4-ph 32.4 71 0.0024 30.6 6.2 75 93-173 186-268 (334)
277 3cs3_A Sugar-binding transcrip 32.3 2.2E+02 0.0074 25.1 9.5 78 109-189 118-199 (277)
278 2y7b_A Actin-binding protein a 32.2 42 0.0014 26.6 4.0 27 79-105 103-129 (134)
279 2gm3_A Unknown protein; AT3G01 32.1 96 0.0033 25.5 6.5 68 132-206 91-164 (175)
280 4a26_A Putative C-1-tetrahydro 32.0 3.2E+02 0.011 25.5 10.5 80 90-172 13-101 (300)
281 1unq_A RAC-alpha serine/threon 31.9 46 0.0016 26.0 4.2 27 79-105 85-111 (125)
282 1di6_A MOGA, molybdenum cofact 31.8 1.3E+02 0.0046 26.1 7.5 59 131-189 26-94 (195)
283 2cod_A Centaurin-delta 1; ARF 31.8 32 0.0011 26.5 3.2 26 80-105 75-100 (115)
284 1dro_A Beta-spectrin; cytoskel 31.7 30 0.001 27.2 3.0 26 80-105 95-120 (122)
285 3erw_A Sporulation thiol-disul 31.6 1.8E+02 0.006 22.4 8.1 90 81-179 38-127 (145)
286 3i45_A Twin-arginine transloca 31.5 1.9E+02 0.0067 26.9 9.4 78 108-189 141-222 (387)
287 1o1x_A Ribose-5-phosphate isom 31.5 71 0.0024 27.0 5.3 83 114-232 16-108 (155)
288 1weh_A Conserved hypothetical 31.3 32 0.0011 29.5 3.2 46 153-205 20-65 (171)
289 1v5p_A Pleckstrin homology dom 31.3 35 0.0012 27.4 3.4 25 80-104 96-120 (126)
290 2vrn_A Protease I, DR1199; cys 31.1 48 0.0017 28.2 4.5 98 108-214 8-124 (190)
291 2dhk_A TBC1 domain family memb 31.1 33 0.0011 26.8 3.2 26 79-104 79-104 (119)
292 1x05_A Pleckstrin; PH domain, 31.0 32 0.0011 27.1 3.1 27 80-106 96-122 (129)
293 1s3a_A NADH-ubiquinone oxidore 31.0 25 0.00087 27.4 2.3 45 109-153 19-63 (102)
294 3hcw_A Maltose operon transcri 31.0 1.7E+02 0.0059 26.2 8.6 90 109-206 131-228 (295)
295 2d9v_A Pleckstrin homology dom 31.0 42 0.0014 26.8 3.8 25 80-104 90-114 (130)
296 1btn_A Beta-spectrin; signal t 31.0 31 0.0011 26.0 2.9 22 80-101 84-105 (106)
297 1gqo_A Dehydroquinase; dehydra 30.9 1.1E+02 0.0038 25.4 6.3 43 130-173 31-73 (143)
298 3q0i_A Methionyl-tRNA formyltr 30.7 64 0.0022 30.6 5.6 69 109-180 31-99 (318)
299 3ctp_A Periplasmic binding pro 30.7 1.4E+02 0.0047 27.5 8.0 69 107-178 58-127 (330)
300 2hpv_A FMN-dependent NADH-azor 30.6 1.1E+02 0.0038 26.1 6.9 40 110-150 2-45 (208)
301 3i09_A Periplasmic branched-ch 30.6 2E+02 0.007 26.6 9.3 78 108-189 139-218 (375)
302 1x1g_A Pleckstrin 2; PH domain 30.5 30 0.001 27.3 2.8 25 80-104 100-124 (129)
303 1tvm_A PTS system, galactitol- 30.4 75 0.0026 25.0 5.1 57 107-172 19-75 (113)
304 2h0a_A TTHA0807, transcription 30.3 59 0.002 28.8 5.2 67 131-205 19-86 (276)
305 4hjh_A Phosphomannomutase; str 30.2 1.5E+02 0.0051 29.6 8.5 80 91-177 158-249 (481)
306 3ttv_A Catalase HPII; heme ori 30.2 39 0.0013 36.1 4.2 85 110-207 601-702 (753)
307 3cs3_A Sugar-binding transcrip 30.1 1.2E+02 0.0041 26.9 7.3 81 107-203 6-86 (277)
308 2dum_A Hypothetical protein PH 29.9 76 0.0026 26.0 5.5 72 132-210 82-161 (170)
309 1obo_A Flavodoxin; electron tr 29.7 1E+02 0.0035 25.4 6.2 85 110-206 2-89 (169)
310 1sqs_A Conserved hypothetical 29.7 1.1E+02 0.0037 27.2 6.8 61 110-174 2-87 (242)
311 1fmt_A Methionyl-tRNA FMet for 29.6 89 0.003 29.5 6.4 69 109-180 27-95 (314)
312 1byk_A Protein (trehalose oper 29.5 94 0.0032 27.1 6.3 80 109-190 115-195 (255)
313 2yry_A Pleckstrin homology dom 29.5 38 0.0013 26.3 3.2 24 80-103 96-119 (122)
314 3pdk_A Phosphoglucosamine muta 29.4 93 0.0032 31.1 6.8 50 90-147 175-224 (469)
315 3d54_D Phosphoribosylformylgly 29.4 61 0.0021 28.0 4.9 52 109-178 2-53 (213)
316 1b4b_A Arginine repressor; cor 29.3 22 0.00075 25.8 1.5 32 148-179 18-50 (71)
317 4hcj_A THIJ/PFPI domain protei 29.1 25 0.00084 30.3 2.1 74 132-213 26-116 (177)
318 1hyq_A MIND, cell division inh 28.9 2.7E+02 0.0094 24.4 9.5 37 111-149 3-39 (263)
319 1e2b_A Enzyme IIB-cellobiose; 28.8 81 0.0028 24.5 5.0 54 109-172 3-56 (106)
320 3raz_A Thioredoxin-related pro 28.8 2.1E+02 0.0073 22.5 8.9 89 81-179 28-118 (151)
321 3kbq_A Protein TA0487; structu 28.8 81 0.0028 27.0 5.4 46 131-177 26-73 (172)
322 3tqq_A Methionyl-tRNA formyltr 28.6 57 0.0019 30.9 4.8 69 109-180 26-94 (314)
323 3uw2_A Phosphoglucomutase/phos 28.1 99 0.0034 31.1 6.8 47 92-147 178-224 (485)
324 3k7p_A Ribose 5-phosphate isom 27.9 79 0.0027 27.4 5.1 85 113-233 25-121 (179)
325 2klx_A Glutaredoxin; thioredox 27.8 1.6E+02 0.0055 21.1 6.5 55 109-171 5-60 (89)
326 1v88_A Oxysterol binding prote 27.7 38 0.0013 27.4 3.0 25 80-104 100-124 (130)
327 1xxa_A ARGR, arginine represso 27.6 43 0.0015 24.7 3.0 33 147-179 19-53 (78)
328 3l3b_A ES1 family protein; ssg 27.5 90 0.0031 28.2 5.8 69 109-178 23-119 (242)
329 1wg7_A Dedicator of cytokinesi 27.2 46 0.0016 27.1 3.4 25 80-104 100-124 (150)
330 1mai_A Phospholipase C delta-1 27.2 52 0.0018 26.6 3.7 83 20-105 31-122 (131)
331 3rht_A (gatase1)-like protein; 27.1 38 0.0013 31.2 3.2 55 108-173 3-57 (259)
332 3ot1_A 4-methyl-5(B-hydroxyeth 27.0 66 0.0023 28.0 4.7 95 107-213 7-120 (208)
333 3o21_A Glutamate receptor 3; p 26.8 2.1E+02 0.0071 27.1 8.7 75 109-188 130-207 (389)
334 2gek_A Phosphatidylinositol ma 26.6 1.4E+02 0.005 27.8 7.5 44 107-151 18-62 (406)
335 2b99_A Riboflavin synthase; lu 26.5 1.9E+02 0.0066 24.3 7.2 74 110-188 3-86 (156)
336 2dtc_A RAL guanine nucleotide 26.5 54 0.0019 26.6 3.7 27 80-106 88-114 (126)
337 2coc_A FYVE, rhogef and PH dom 26.5 47 0.0016 26.2 3.2 25 80-104 82-106 (112)
338 3eyt_A Uncharacterized protein 26.4 2.1E+02 0.0072 22.6 7.6 96 81-178 32-129 (158)
339 3r75_A Anthranilate/para-amino 26.3 1.4E+02 0.0048 31.2 7.7 42 130-180 459-500 (645)
340 1ka9_H Imidazole glycerol phos 26.3 1.5E+02 0.005 25.4 6.8 38 132-181 17-54 (200)
341 3ono_A Ribose/galactose isomer 26.3 1.1E+02 0.0038 27.2 5.9 88 114-233 7-106 (214)
342 3lap_A Arginine repressor; arg 26.2 59 0.002 27.9 4.0 49 131-179 95-149 (170)
343 3g23_A Peptidase U61, LD-carbo 26.1 98 0.0033 28.6 5.9 72 111-186 4-88 (274)
344 2ark_A Flavodoxin; FMN, struct 26.1 1.1E+02 0.0039 25.8 6.0 56 109-174 4-60 (188)
345 1n57_A Chaperone HSP31, protei 25.9 1.2E+02 0.0042 28.0 6.6 42 164-208 143-189 (291)
346 4fe7_A Xylose operon regulator 25.8 1.4E+02 0.0049 28.5 7.4 82 107-204 23-104 (412)
347 2h0a_A TTHA0807, transcription 25.7 3.3E+02 0.011 23.6 9.6 80 109-190 114-203 (276)
348 3s99_A Basic membrane lipoprot 25.7 2.5E+02 0.0085 26.7 8.9 89 107-204 24-117 (356)
349 2dkp_A Pleckstrin homology dom 25.6 47 0.0016 26.0 3.2 25 80-104 95-119 (128)
350 3fw2_A Thiol-disulfide oxidore 25.6 2E+02 0.0068 22.6 7.2 90 81-179 37-129 (150)
351 3i3w_A Phosphoglucosamine muta 25.6 1.4E+02 0.0049 29.4 7.4 48 92-146 154-201 (443)
352 3ipz_A Monothiol glutaredoxin- 25.6 1.9E+02 0.0065 22.0 6.8 29 129-157 35-63 (109)
353 2ywj_A Glutamine amidotransfer 25.5 1.2E+02 0.0042 25.5 6.1 51 110-180 1-51 (186)
354 1u5f_A SRC-associated adaptor 25.4 42 0.0014 27.3 2.9 26 80-105 95-120 (148)
355 4fo5_A Thioredoxin-like protei 25.4 1.7E+02 0.0057 22.9 6.6 92 80-179 35-126 (143)
356 3qua_A Putative uncharacterize 25.2 53 0.0018 28.9 3.6 46 154-206 41-87 (199)
357 1f1j_A Caspase-7 protease; cas 25.2 1.4E+02 0.005 27.9 6.9 112 103-214 62-196 (305)
358 1upq_A PEPP1; PH domain, phosp 25.1 49 0.0017 25.6 3.2 25 80-104 85-109 (123)
359 3uk7_A Class I glutamine amido 24.8 42 0.0014 32.5 3.2 99 107-214 10-137 (396)
360 2nv0_A Glutamine amidotransfer 24.8 1.1E+02 0.0038 26.1 5.7 52 110-181 2-53 (196)
361 2q62_A ARSH; alpha/beta, flavo 24.7 1.6E+02 0.0054 26.6 6.9 95 108-206 33-145 (247)
362 2ohh_A Type A flavoprotein FPR 24.6 3.7E+02 0.013 25.3 10.1 61 108-174 255-315 (404)
363 2hna_A Protein MIOC, flavodoxi 24.5 85 0.0029 25.3 4.6 53 110-174 2-54 (147)
364 1t1v_A SH3BGRL3, SH3 domain-bi 24.4 2.1E+02 0.0071 20.9 7.1 47 110-157 2-48 (93)
365 1uuy_A CNX1, molybdopterin bio 24.4 1.1E+02 0.0039 25.6 5.6 58 132-189 29-99 (167)
366 2fzv_A Putative arsenical resi 24.4 1.5E+02 0.0053 27.3 6.8 96 107-206 56-170 (279)
367 1h05_A 3-dehydroquinate dehydr 24.3 1.2E+02 0.0041 25.3 5.3 43 130-173 33-75 (146)
368 1wi1_A Calcium-dependent activ 24.2 67 0.0023 26.1 3.8 26 81-106 87-112 (126)
369 2ct6_A SH3 domain-binding glut 24.0 2.4E+02 0.0081 21.6 7.0 49 108-157 6-54 (111)
370 3hh1_A Tetrapyrrole methylase 24.0 2.1E+02 0.0073 22.2 6.8 43 155-205 69-116 (117)
371 4em8_A Ribose 5-phosphate isom 23.8 1E+02 0.0035 25.8 4.9 66 113-216 10-82 (148)
372 2iss_D Glutamine amidotransfer 23.8 2.3E+02 0.0078 24.3 7.7 55 107-181 18-72 (208)
373 1nbw_B Glycerol dehydratase re 23.7 2E+02 0.0069 23.0 6.4 64 111-178 7-71 (117)
374 3ic4_A Glutaredoxin (GRX-1); s 23.6 1.5E+02 0.0052 21.3 5.6 36 108-150 10-45 (92)
375 2x9a_A Attachment protein G3P; 23.6 24 0.00081 25.0 0.8 12 168-179 39-50 (65)
376 3fg9_A Protein of universal st 23.3 2.8E+02 0.0095 21.9 7.9 43 132-174 83-127 (156)
377 1rtt_A Conserved hypothetical 23.2 77 0.0026 26.9 4.3 60 109-173 6-79 (193)
378 1gtz_A 3-dehydroquinate dehydr 23.2 1.3E+02 0.0046 25.3 5.5 65 110-175 7-81 (156)
379 1tuo_A Putative phosphomannomu 23.2 1.2E+02 0.004 30.2 6.2 80 92-177 157-252 (464)
380 3l07_A Bifunctional protein fo 23.2 4.3E+02 0.015 24.5 9.6 96 90-189 11-118 (285)
381 3rfo_A Methionyl-tRNA formyltr 23.0 91 0.0031 29.5 5.0 69 109-180 28-96 (317)
382 3r6w_A FMN-dependent NADH-azor 22.9 1.9E+02 0.0064 24.9 6.9 39 110-149 2-43 (212)
383 2fex_A Conserved hypothetical 22.9 52 0.0018 28.1 3.1 92 110-214 2-110 (188)
384 2pbq_A Molybdenum cofactor bio 22.9 1.4E+02 0.0049 25.3 6.0 57 132-188 29-95 (178)
385 1r7h_A NRDH-redoxin; thioredox 22.8 1.8E+02 0.0062 19.6 6.7 35 111-152 2-36 (75)
386 2c92_A 6,7-dimethyl-8-ribityll 22.7 1.4E+02 0.0048 25.3 5.6 95 108-206 16-120 (160)
387 2qh8_A Uncharacterized protein 22.6 2E+02 0.0068 25.9 7.4 67 107-176 6-79 (302)
388 2w2x_D 1-phosphatidylinositol- 22.6 41 0.0014 26.7 2.2 26 80-105 95-120 (124)
389 2fz5_A Flavodoxin; alpha/beta 22.5 1.5E+02 0.0051 23.1 5.7 53 112-174 2-54 (137)
390 2bmv_A Flavodoxin; electron tr 22.4 1.6E+02 0.0055 24.1 6.1 83 110-206 2-87 (164)
391 2yxb_A Coenzyme B12-dependent 22.3 2.7E+02 0.0092 23.1 7.5 56 131-188 36-95 (161)
392 2fep_A Catabolite control prot 22.2 4.1E+02 0.014 23.4 9.7 79 109-189 133-217 (289)
393 1u5e_A SRC-associated adaptor 22.2 66 0.0023 28.3 3.7 26 80-105 184-209 (211)
394 3f2v_A General stress protein 22.1 1.1E+02 0.0036 26.6 5.0 35 110-148 2-37 (192)
395 1t0i_A YLR011WP; FMN binding p 22.1 1.9E+02 0.0065 24.2 6.7 36 111-148 2-44 (191)
396 1ydg_A Trp repressor binding p 22.0 80 0.0027 27.2 4.2 40 108-150 5-44 (211)
397 3hdc_A Thioredoxin family prot 21.9 2.2E+02 0.0075 22.7 6.8 85 80-179 44-128 (158)
398 3olq_A Universal stress protei 21.9 1.3E+02 0.0046 27.3 6.0 72 132-209 77-154 (319)
399 4fle_A Esterase; structural ge 21.8 1E+02 0.0035 25.6 4.8 49 110-160 2-50 (202)
400 2ywi_A Hypothetical conserved 21.8 2.7E+02 0.0092 22.9 7.6 94 80-178 49-142 (196)
401 3la6_A Tyrosine-protein kinase 21.4 4.6E+02 0.016 23.8 10.6 100 95-208 75-178 (286)
402 2a5l_A Trp repressor binding p 21.2 1.6E+02 0.0056 24.7 6.1 38 109-149 5-42 (200)
403 2zki_A 199AA long hypothetical 21.2 89 0.003 26.5 4.3 37 109-149 4-40 (199)
404 2vdj_A Homoserine O-succinyltr 21.1 1.1E+02 0.0036 28.8 5.0 65 107-176 33-109 (301)
405 2cvb_A Probable thiol-disulfid 21.1 3E+02 0.01 22.5 7.8 93 81-179 37-129 (188)
406 3h11_A CAsp8 and FADD-like apo 21.0 3.5E+02 0.012 24.8 8.5 93 106-205 39-151 (272)
407 2j59_M RHO-GTPase activating p 21.0 59 0.002 27.0 3.0 25 80-104 87-111 (168)
408 3b6i_A Flavoprotein WRBA; flav 21.0 1.8E+02 0.0061 24.4 6.3 38 110-150 2-40 (198)
409 4a5o_A Bifunctional protein fo 20.9 5E+02 0.017 24.0 10.6 79 90-172 12-99 (286)
410 1btk_A Bruton'S tyrosine kinas 20.9 58 0.002 27.6 2.9 27 80-106 108-134 (169)
411 2l5o_A Putative thioredoxin; s 20.8 3E+02 0.01 21.4 8.8 84 84-178 35-118 (153)
412 3h5t_A Transcriptional regulat 20.8 3.3E+02 0.011 25.2 8.7 87 108-204 67-158 (366)
413 3ndc_A Precorrin-4 C(11)-methy 20.6 1.8E+02 0.0061 26.4 6.4 48 165-223 75-127 (264)
414 2wte_A CSA3; antiviral protein 20.6 2.8E+02 0.0096 24.9 7.7 70 107-179 32-107 (244)
415 3pzs_A PM kinase, pyridoxamine 20.4 11 0.00039 35.0 -1.9 27 204-230 221-247 (289)
416 3qmx_A Glutaredoxin A, glutare 20.1 2.3E+02 0.0079 21.2 6.1 41 109-156 15-55 (99)
417 1p5d_X PMM, phosphomannomutase 20.1 1.8E+02 0.0061 28.8 6.8 47 92-147 156-202 (463)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=4.9e-47 Score=371.47 Aligned_cols=253 Identities=21% Similarity=0.311 Sum_probs=204.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++|++||+||.||++++.+.+ +++++.|++++++++++.|++++|+.++++++. +++|.||++|||||+|||+|+|
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l 83 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL 83 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence 35789999999999999988878 589999999999999999999999999999986 4899999999999999999999
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecc
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv 266 (424)
+.++ .++|||+||+||+|+||++| |+|.++.+|+..|.+|+.+++|+++++ .++|.+ ++++||+|++
T Consensus 84 ~~~~-----~~~~l~iiP~Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~---~~~F~~-~~~~G~da~v 150 (304)
T 3s40_A 84 APLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKAN---GQHFLN-FWGIGLVSEV 150 (304)
T ss_dssp TTCS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEET---TEEESS-EEEEC-----
T ss_pred hhCC-----CCCcEEEecCCcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEEC---CEEEEE-EEeehHHHHH
Confidence 9853 37999999999999999999 889999999999999999999999996 367765 6999999999
Q ss_pred cccc--cccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 014455 267 DIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (424)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (424)
.... +.++++|+++|.+++++.+++.+.|+.++.+ +|
T Consensus 151 ~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg--- 189 (304)
T 3s40_A 151 SNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITY--------------------------------------DG--- 189 (304)
T ss_dssp -------------CHHHHTTTC------CCEEEEEEE--------------------------------------TT---
T ss_pred HHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEE--------------------------------------CC---
Confidence 8864 3567899999999999988887777666542 11
Q ss_pred cCCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 345 ~~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
+.+++++.+++++|++|+|+++.++|+|+++||+|||+++++.++..++.++..+..|+ ...|.|++++++
T Consensus 190 -------~~~~~~~~~v~v~N~~~~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~ 260 (304)
T 3s40_A 190 -------QVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFHVKAK 260 (304)
T ss_dssp -------EEEEEEEEEEEEECSSEETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEEEEES
T ss_pred -------EEEEeEEEEEEEECCCcCCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEEEEcc
Confidence 12456788899999999999999999999999999999999999877766666666666 788999999986
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=6.6e-44 Score=354.11 Aligned_cols=253 Identities=26% Similarity=0.371 Sum_probs=216.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+++++||+||.||++++.+.+ +++.+.|+++++++++..|++++|+.++++++..+++|.||++|||||++||+|+|+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~ 102 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE 102 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHh
Confidence 568999999999999888777 6899999999999999999999999999988877789999999999999999999975
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeecccc
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~~ 268 (424)
.+ .++|||+||+||+|+||++| |+|.++.+|+..|.+|+.+++|+++++ .++|.+ ++++||+|++..
T Consensus 103 ~~-----~~~pl~iIP~GT~N~lAr~L----g~~~~~~~al~~i~~g~~~~iD~g~v~---~r~fl~-~~~~G~~a~v~~ 169 (337)
T 2qv7_A 103 KP-----NRPKLGVIPMGTVNDFGRAL----HIPNDIMGALDVIIEGHSTKVDIGKMN---NRYFIN-LAAGGQLTQVSY 169 (337)
T ss_dssp CS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHHHTCEEEEEEEEET---TEEESS-EEEEECBCC---
T ss_pred CC-----CCCcEEEecCCcHhHHHHHc----CCCCCHHHHHHHHHcCCcEEEEEEEEC---CEEEEE-EeeecccHHHHH
Confidence 42 37999999999999999999 888899999999999999999999996 367765 699999999987
Q ss_pred ccc--ccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccC
Q 014455 269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (424)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (424)
..+ .++++|.++|.+++++.++..+.|+.++.+ +|
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg----- 206 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEY--------------------------------------DG----- 206 (337)
T ss_dssp ----------CGGGSCCCTTTTGGGBCCEEEEEEE--------------------------------------TT-----
T ss_pred HhhHHHHhccChHHHHHHHHHHHHhCCCccEEEEE--------------------------------------CC-----
Confidence 654 456789999999998888877777666542 11
Q ss_pred CCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 347 ~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
+.++++++++.++|++++|+++.++|+|+++||.||++++++.+++++++++..+..|+|.+.|.|++++++
T Consensus 207 -----~~~~~~~~~v~v~n~~~~gGg~~i~P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~ 278 (337)
T 2qv7_A 207 -----NVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAK 278 (337)
T ss_dssp -----EEEEEEEEEEEEESSCCCSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEES
T ss_pred -----EEEEeeEEEEEEECCCCCCCCCccCCCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEee
Confidence 124567788999999999999999999999999999999999999999999999999999999999998875
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=5.6e-42 Score=339.55 Aligned_cols=250 Identities=21% Similarity=0.226 Sum_probs=205.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+++|++||+||.||++ +.+ +++.+.|+++++++.+..|++++|+.++++++..+++|.||++|||||++||+|+|.
T Consensus 28 ~~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~ 103 (332)
T 2bon_A 28 EFPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALI 103 (332)
T ss_dssp --CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHH
T ss_pred hcceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHh
Confidence 3578999999999987 346 478999999999999999999999999988876678999999999999999999999
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeeeeeeEEEEeCCeeEEEEEeeeeeeeeccc
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADID 267 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~lDl~~v~~g~~~~f~~~~~~~G~~Adv~ 267 (424)
.+++ ..++|||+||+||+|+||+++ ++|.++.+++..|.+|+.+++|+++++. .++|.+ ++++||+|++.
T Consensus 104 ~~~~---~~~~plgiiP~Gt~N~fa~~l----~i~~~~~~al~~i~~g~~~~iDlg~v~~--r~~fl~-~~~~G~da~v~ 173 (332)
T 2bon_A 104 QCEG---DDIPALGILPLGTANDFATSV----GIPEALDKALKLAIAGDAIAIDMAQVNK--QTCFIN-MATGGFGTRIT 173 (332)
T ss_dssp HCCS---SCCCEEEEEECSSSCHHHHHT----TCCSSHHHHHHHHHHSEEEEEEEEEETT--SCEESS-EEEEEEEEEC-
T ss_pred hccc---CCCCeEEEecCcCHHHHHHhc----CCCCCHHHHHHHHHcCCeEEeeEEEECC--ceEEEE-EEeECccHHHH
Confidence 6421 137899999999999999999 8888999999999999999999999963 227765 69999999998
Q ss_pred cc--ccccccccchhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccc
Q 014455 268 IE--SEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVD 345 (424)
Q Consensus 268 ~~--sek~R~~G~~ry~~~~l~~l~~~r~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 345 (424)
.+ .+.++++|.++|.+.+++.++..+.|+.++.+ +|
T Consensus 174 ~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg---- 211 (332)
T 2bon_A 174 TETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRG--------------------------------------EN---- 211 (332)
T ss_dssp ---------CCHHHHHHHHHTSCEEEEECEEEEEEE--------------------------------------TT----
T ss_pred HHhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------CC----
Confidence 64 34567899999998887766666655555432 11
Q ss_pred CCCCceEEEeeceEEEEeeecccCCCCCccCcCCccCCCcEEEEEEcCCChHHHHHHHHhccCCCcccCCCeEEEEee
Q 014455 346 LKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVS 423 (424)
Q Consensus 346 ~~~~~w~~i~g~~~~v~v~N~~~~g~~~~~aP~A~~~DG~ldliiv~~~s~~~ll~~l~~~~~G~h~~~p~V~~~k~k 423 (424)
. .+++++.++.++|++|+|+++.++|+|+++||.||++++++. ++ +++++..+..| |.+ |.|.+++++
T Consensus 212 ---~---~~~~~~~~v~v~N~~~~ggg~~i~P~a~~~DG~Ldv~iv~~~-~~-~l~~~~~~~~g-~~~-~~v~~~~~~ 279 (332)
T 2bon_A 212 ---F---HWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGD-EI-LPALVSTLKSD-EDN-PNIIEGASS 279 (332)
T ss_dssp ---E---EEEEEESEEEEESSSCBTTTBCSCTTCCTTSSCEEEEEECCS-SC-CHHHHHHHHTT-CCC-TTEEEEEES
T ss_pred ---E---EEEEEEEEEEEECCCccCCCcccCCCCCCCCCeEEEEEECCH-HH-HHHHHHHHHcC-CCC-CcEEEEEee
Confidence 1 234667778899999999999999999999999999999998 77 88888899999 876 999998875
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.23 E-value=4e-12 Score=122.96 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=77.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH----HHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA----KEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a----~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
++++++|+||.++. +.+.+ +++...|+++|+++.+..|...... ..++.+....++|.||++|||||++++++
T Consensus 5 mkki~ii~np~~~~--~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHH
Confidence 58899999998643 33334 5889999999998877655322100 00001111246899999999999999999
Q ss_pred HhhcCcCcccccCCc-EEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 185 GLLEREDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 185 gL~~~~~~~~~~~~p-lgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
++... ++| ||| |+||.|.|+. + + |.++.+++..|.+|+.+
T Consensus 82 ~~~~~-------~~P~lGI-~~Gt~gfla~-~----~-~~~~~~al~~i~~g~~~ 122 (292)
T 2an1_A 82 TLARY-------DINVIGI-NRGNLGFLTD-L----D-PDNALQQLSDVLEGRYI 122 (292)
T ss_dssp HHTTS-------SCEEEEB-CSSSCCSSCC-B----C-TTSHHHHHHHHHTTCEE
T ss_pred HhhcC-------CCCEEEE-ECCCcccCCc-C----C-HHHHHHHHHHHHcCCCE
Confidence 99865 345 676 8999666664 4 5 77899999999999863
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.20 E-value=3.2e-11 Score=114.59 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=72.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+|+++|+||.+|++ +.+.. +++...|+ ++++ . + . | +....++|.||++|||||++++++++..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~~--~-~-~--~------~~~~~~~D~vv~~GGDGTll~~a~~~~~- 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIEF--G-E-A--N------APGRVTADLIVVVGGDGTVLKAAKKAAD- 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEEE--E-E-S--S------SCSCBCCSEEEEEECHHHHHHHHTTBCT-
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCce--e-c-c--c------ccccCCCCEEEEEeCcHHHHHHHHHhCC-
Confidence 47999999999986 65443 45666655 4332 2 2 1 2 2223579999999999999999999975
Q ss_pred cCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 190 ~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
. .+.||| ++||.|.++ .+ . |.++.+++..+.+|+.+
T Consensus 64 ~------~PilGI-n~G~~Gfl~-~~----~-~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 G------TPMVGF-KAGRLGFLT-SY----T-LDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp T------CEEEEE-ESSSCCSSC-CB----C-GGGHHHHHHHHHTTCCE
T ss_pred C------CCEEEE-ECCCCCccC-cC----C-HHHHHHHHHHHHcCCce
Confidence 2 334777 599995555 56 4 78999999999999764
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.13 E-value=7e-11 Score=115.09 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=77.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh----------------HHHHHHH-hccCCCceEE
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH----------------AKEIVKV-LDLSKYDGIV 171 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~----------------a~~l~~~-~~~~~~d~vV 171 (424)
++++++|+||.++. +.+.+ +++...|+++|+++.+..+..... ...+.+. ...+++|.||
T Consensus 4 m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCEE
T ss_pred CCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEE
Confidence 68899999998864 33344 589999999999988776664321 2222121 2335789999
Q ss_pred EEcCCchHHHHHHHhhcCcCcccccCCc-EEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCeee
Q 014455 172 CVSGDGILVEVVNGLLEREDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRL 239 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~~~~~~~~~~p-lgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~~ 239 (424)
++|||||++++++.+... .+| || |+.||.|.|+. + .|.++.+++..+.+|+.+.
T Consensus 81 ~~GGDGT~l~a~~~~~~~-------~~pvlg-i~~G~~gfl~~-~-----~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNA-------SIPVLG-VNLGRIGFLAE-A-----EAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEECHHHHHHHHHHHHHH-------TCCEEE-EECSSCCSSCS-E-----EGGGHHHHHHHHHHTCCEE
T ss_pred EEeCCHHHHHHHHHhccC-------CCCEEE-EeCCCCccCcc-c-----CHHHHHHHHHHHHcCCcEE
Confidence 999999999999999764 355 66 58999988874 4 2668899999999997643
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.06 E-value=3.4e-10 Score=108.32 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=74.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+++.+|+||. .++.+.+ +++...|+++|++++ ..++|.||++|||||+.++++.+...
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~------------------~~~~D~vv~lGGDGT~l~aa~~~~~~ 58 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD------------------DVEPEIVISIGGDGTFLSAFHQYEER 58 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC------------------SSSCSEEEEEESHHHHHHHHHHTGGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC------------------CCCCCEEEEEcCcHHHHHHHHHHhhc
Confidence 4789999973 3445444 588899999998761 25789999999999999999999753
Q ss_pred cCcccccCCc-EEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 190 EDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 190 ~~~~~~~~~p-lgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
. .++| ||| |.|| |+|+..+ . |.++++++..+.+|+.+
T Consensus 59 ~-----~~~PilGI-n~G~-lgfl~~~----~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 59 L-----DEIAFIGI-HTGH-LGFYADW----R-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp T-----TTCEEEEE-ESSS-CCSSCCB----C-GGGHHHHHHHHHTTCCE
T ss_pred C-----CCCCEEEE-eCCC-CCcCCcC----C-HHHHHHHHHHHHcCCCE
Confidence 1 1467 666 9999 6688877 4 77899999999999654
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=98.27 E-value=4.7e-07 Score=90.38 Aligned_cols=114 Identities=17% Similarity=0.209 Sum_probs=75.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh---------------------ccC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL---------------------DLS 165 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~---------------------~~~ 165 (424)
..+++++||.||.. ..+.+.. +++...|.+.+..++++..+...+ ++..++ ...
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~a~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAM-VEFITHLHESYPEVNVIVQPDVAE--EISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHH-HHHHHHHHHHCTTCEEECCHHHHH--HHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHH-HHHHHHHHHhCCCeEEEEeCchhh--hhhhhccccccccccccccccccchhhccc
Confidence 45789999999974 4444444 578888988833344444433222 221110 113
Q ss_pred CCceEEEEcCCchHHHHHHHhhcCcCcccccCC-cEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCee
Q 014455 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKV-PLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (424)
Q Consensus 166 ~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~-plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~~ 238 (424)
++|.||++|||||+..++..+... .+ |+-=|+.||-+-++ .+ . +.++.+++..+.+|+..
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~G~lGFLt-~~----~-~~~~~~al~~il~g~~~ 174 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFALGTLGFLS-PF----D-FKEHKKVFQEVISSRAK 174 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEECSSCCSSC-CE----E-GGGHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEECCCcccCC-cC----C-hHHHHHHHHHHhcCCce
Confidence 589999999999999999988654 34 44444999885444 45 2 45788899999998653
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=97.29 E-value=0.0006 Score=64.82 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=65.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+.+++.++.||..- .+++...|+++|+++.+.... .. . ..+.|.||++|||||+-.++..+.
T Consensus 28 ~~mki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~-~~-------~--~~~~DlvIvlGGDGT~L~aa~~~~ 89 (278)
T 1z0s_A 28 GGMRAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQP-SE-------E--LENFDFIVSVGGDGTILRILQKLK 89 (278)
T ss_dssp --CEEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSC-CG-------G--GGGSSEEEEEECHHHHHHHHTTCS
T ss_pred cceEEEEEeCCcHH--------HHHHHHHHHHCCCEEEEcccc-cc-------c--cCCCCEEEEECCCHHHHHHHHHhC
Confidence 34579999998653 257889999999887553221 11 1 136899999999999988887664
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHh
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIR 234 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~ 234 (424)
. . +|+-=|..|+-+-++. + .|.++.+++..+.+
T Consensus 90 ~-------~-~PilGIN~G~lGFLt~-~-----~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 90 R-------C-PPIFGINTGRVGLLTH-A-----SPENFEVELKKAVE 122 (278)
T ss_dssp S-------C-CCEEEEECSSSCTTCC-B-----BTTBCHHHHHHHHH
T ss_pred C-------C-CcEEEECCCCCccccc-c-----CHHHHHHHHHHHHh
Confidence 3 2 6777778887665553 3 24567777777774
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=96.38 E-value=0.012 Score=58.03 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=72.5
Q ss_pred hhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH---------H-------hc--c
Q 014455 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------V-------LD--L 164 (424)
Q Consensus 103 ~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~---------~-------~~--~ 164 (424)
|.+...+++++||--|..- ...... +++...|...|+++-+... ...+. .+.. . .+ .
T Consensus 32 l~w~~~~k~I~iv~K~~~~--~~~~~~-~~l~~~L~~~~~~V~ve~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (365)
T 3pfn_A 32 LTWNKSPKSVLVIKKMRDA--SLLQPF-KELCTHLMEENMIVYVEKK-VLEDP-AIASDESFGAVKKKFCTFREDYDDIS 106 (365)
T ss_dssp EEESSCCCEEEEEECTTCG--GGHHHH-HHHHHHHHHTSCEEEEEHH-HHHSH-HHHHCSTTHHHHHHCEEECTTTCCCT
T ss_pred cccCCCCCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEehH-Hhhhh-ccccccccccccccccccccChhhcc
Confidence 3344678999999887653 333334 5788888888876543221 11110 1110 0 00 1
Q ss_pred CCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCCCCCHHHHHHHHHhCCe
Q 014455 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~p~~~~~a~~~i~~g~~ 237 (424)
+.+|.||++|||||+-.++.-+... .+|+-=|-.|+- +|-..+ .+.+..+++..+.+|..
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~G~L-GFLt~~-----~~~~~~~~l~~vl~g~~ 166 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQGS-------VPPVMAFHLGSL-GFLTPF-----SFENFQSQVTQVIEGNA 166 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCSSS-------CCCEEEEESSSC-TTTCCE-----ESTTHHHHHHHHHHSCC
T ss_pred cCCCEEEEEcChHHHHHHHHHhccC-------CCCEEEEcCCCC-ccceee-----cHHHHHHHHHHHHcCCC
Confidence 4789999999999999999877543 567655555632 222232 24578899999999864
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=94.04 E-value=0.34 Score=47.66 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=63.8
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cC--ChhhHHHHHHHhccCCCceEEEEc
Q 014455 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 99 ~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+.+.+...+ +|++||..+.+-...+ +.+++...|+++|+++.++. .. ......++++.+...+.|.||++|
T Consensus 32 l~~~l~~~g--~~~liVtd~~~~~~~g---~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 32 RGNIIDLLG--KRALVVTGKSSSKKNG---SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HGGGGGGTC--SEEEEEEESSGGGTSS---HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHcC--CEEEEEECchHHhhcc---HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334444433 7899999875533221 23688899999999876543 11 334556666666666899999999
Q ss_pred CCchHHHHHHHhhcC------cCccc------ccCCcEEEecCC
Q 014455 175 GDGILVEVVNGLLER------EDWND------AIKVPLGVVPAG 206 (424)
Q Consensus 175 GDGTl~evvngL~~~------~~~~~------~~~~plgiiP~G 206 (424)
| |++.++.-.+... +.++- ...+|+..||.=
T Consensus 107 G-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 107 G-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp S-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred C-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 8 6666665554321 00000 036899999974
No 12
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=93.64 E-value=0.2 Score=48.89 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=61.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cCCh--hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~~~--~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++||..+..-+ .+.+++...|+++|+++.++. ...+ ....++ +.+...+.|.||++|| |++.++.-.+
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHH
Confidence 5899999876543 134688999999999887654 3322 334455 5555568899999998 7888887776
Q ss_pred hcCcCcccccCCcEEEecCCCh
Q 014455 187 LEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTg 208 (424)
.-. ..+|+..||.=.+
T Consensus 108 A~~------~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 108 AFL------RKLPFISVPTSTS 123 (354)
T ss_dssp HHH------HTCCEEEEESCCS
T ss_pred Hhh------cCCCEEEecCccc
Confidence 532 2689999997443
No 13
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=92.75 E-value=0.5 Score=46.82 Aligned_cols=94 Identities=9% Similarity=0.103 Sum_probs=61.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhc------CCeEEE-EEcC-----ChhhHHHHHHHhccCC--C---ceEE
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA------NIQFTV-QETT-----QQLHAKEIVKVLDLSK--Y---DGIV 171 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a------g~~~~v-~~T~-----~~~~a~~l~~~~~~~~--~---d~vV 171 (424)
.+|++||.++... +.+.+++...|+.+ ++++.+ .... ......++.+.+...+ . |.||
T Consensus 36 ~~k~liVtd~~v~-----~~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 36 STTYVLVTDTNIG-----SIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp CSEEEEEEEHHHH-----HHHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CCeEEEEECCcHH-----HHHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 4789999986432 22446888888877 777652 2222 2244455555554445 6 9999
Q ss_pred EEcCCchHHHHHHHhhcCcCcccccCCcEEEecC--CChhhhh
Q 014455 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA--GTGNGMI 212 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~--GTgN~~A 212 (424)
++|| |++.++.-.....- ...+|+..||. ||+.+-+
T Consensus 111 alGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 111 ALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 9998 77777766554210 02689999999 7777763
No 14
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=92.48 E-value=0.16 Score=49.97 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=58.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-Ec-CCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ET-TQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T-~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++||.++..-+ .+.+++...|+.+++++.+. .. +.. ....++++.+...+.|.||++|| |++.++.-.+
T Consensus 32 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 105 (370)
T 1jq5_A 32 NKTVVIADEIVWK-----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAV 105 (370)
T ss_dssp SEEEEEECHHHHH-----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEEChHHHH-----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 7899999875532 13468999999999887422 22 211 23445555555567999999998 8888887776
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
.-. ..+|+..||.
T Consensus 106 A~~------~~~p~i~IPT 118 (370)
T 1jq5_A 106 ADE------LDAYIVIVPT 118 (370)
T ss_dssp HHH------HTCEEEEEES
T ss_pred HHh------cCCCEEEecc
Confidence 532 2689999997
No 15
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=92.46 E-value=0.65 Score=46.01 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC-----ChhhHHHHHHHhccCCC---ceEEEEcCCch
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-----QQLHAKEIVKVLDLSKY---DGIVCVSGDGI 178 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~-----~~~~a~~l~~~~~~~~~---d~vV~vGGDGT 178 (424)
..+|++||.++...+ .+.+++...|+.+|+++.++. .. ......++.+.+...+. |.||++|| |+
T Consensus 61 ~~~rvlIVtd~~v~~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gs 134 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP-----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GV 134 (390)
T ss_dssp TTCEEEEEEETTTHH-----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cH
Confidence 357899999987642 245789999999999887543 22 23344555555443344 79999998 88
Q ss_pred HHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 179 l~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++.-.+...- ...+|+..||.
T Consensus 135 v~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 135 IGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HhhHHHHHHHHh----cCCCCEEEeCC
Confidence 888777653110 12689999997
No 16
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=92.10 E-value=0.72 Score=45.48 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCCCcc-hhhchHHHHHHHHHhcCCeEEEEE--cC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 110 KRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~-a~~~~~~~v~~~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
+|++|+..+...+.. + +.+++...|+.+|+++.++. .. ......++++.+...++|.||++|| |++.++.-
T Consensus 34 ~~~livtd~~~~~~~~g---~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 109 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDG---AVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGK 109 (387)
T ss_dssp SEEEEECCTTTC--CCS---SHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHH
T ss_pred CEEEEEECcchhhccch---HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHH
Confidence 789999987664321 1 23688999999999886542 11 2334456666665578999999998 77777655
Q ss_pred HhhcC---c--Ccc-------cccCCcEEEecC
Q 014455 185 GLLER---E--DWN-------DAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~~---~--~~~-------~~~~~plgiiP~ 205 (424)
.+... + -|+ ....+|+..||.
T Consensus 110 ~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 110 GIGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 54321 0 000 013689999997
No 17
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=91.91 E-value=0.22 Score=49.39 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=52.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++||..|..-+. +.+++...|++ ++++.+... .......++++.+...+.|.||++|| |++.++.-.+
T Consensus 53 ~r~liVtd~~~~~~-----~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~i 125 (387)
T 3uhj_A 53 KRALVLIDRVLFDA-----LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIV 125 (387)
T ss_dssp SEEEEEECTTTHHH-----HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHH
T ss_pred CEEEEEECchHHHH-----HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 78999998876431 34688889998 988722221 12233445555554467999999999 8888888877
Q ss_pred hcCcCcccccCCcEEEecCC
Q 014455 187 LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~G 206 (424)
.-. ..+|+..||.=
T Consensus 126 A~~------~~~p~i~IPTT 139 (387)
T 3uhj_A 126 AID------TGARIVIAPTI 139 (387)
T ss_dssp HHH------TTCEEEECCSS
T ss_pred HHh------cCCCEEEecCc
Confidence 532 26899999983
No 18
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=90.81 E-value=0.71 Score=45.53 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=58.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--c--CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..+.- .+ .. +.+++...|+++|+++.++. . .......++++.+...+.|.||++|| |++.++.-
T Consensus 31 ~~~~liVtd~~~--~~-~g-~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gsv~D~aK 105 (383)
T 3ox4_A 31 FKNALIVSDAFM--NK-SG-VVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG-GSPHDCAK 105 (383)
T ss_dssp CCEEEEEEEHHH--HH-TT-HHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECCch--hh-Cc-hHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHH
Confidence 478999987632 11 11 34689999999999886652 1 22334455555555568999999999 88777765
Q ss_pred Hhhc---CcC--cc-------cccCCcEEEecCC
Q 014455 185 GLLE---RED--WN-------DAIKVPLGVVPAG 206 (424)
Q Consensus 185 gL~~---~~~--~~-------~~~~~plgiiP~G 206 (424)
.+.. .+. |+ ....+|+..||.=
T Consensus 106 ~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 106 AIALVATNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp HHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred HHHHHHhCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 5422 110 10 0136899999973
No 19
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=90.76 E-value=0.39 Score=48.54 Aligned_cols=83 Identities=13% Similarity=0.154 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE--EEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~--v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|++||..+..-+ . +.+++...|+.+|+++. ++.-+.. ....++++.+.. +.|.||++|| |++.++.-.+
T Consensus 92 ~rvlIVtd~~~~~----~-~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~i 164 (450)
T 1ta9_A 92 KSAVVLADQNVWN----I-CANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYI 164 (450)
T ss_dssp SEEEEEEEHHHHH----H-THHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECccHHH----H-HHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHH
Confidence 4899998865533 1 34688999999998873 2222222 234455555555 8999999998 7888887776
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
.-. ..+|+..||.
T Consensus 165 A~~------~giP~I~IPT 177 (450)
T 1ta9_A 165 AHS------MNLPSIICPT 177 (450)
T ss_dssp HHH------TTCCEEEEES
T ss_pred HHh------cCCCEEEEeC
Confidence 532 2689999997
No 20
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=90.51 E-value=0.72 Score=45.86 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+.+-... . +.+++...|+++|+++.++.- .......++++.+...++|.||++|| |++-++.-.
T Consensus 44 ~r~liVtd~~~~~~~--g-~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 119 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN--G-VYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKA 119 (407)
T ss_dssp CEEEEEECSSHHHHS--S-HHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECchHHhhc--c-HHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHH
Confidence 689999874432111 1 336889999999998865532 12244556666665578999999998 777776655
Q ss_pred hhcC---c--Ccc-------cccCCcEEEecC
Q 014455 186 LLER---E--DWN-------DAIKVPLGVVPA 205 (424)
Q Consensus 186 L~~~---~--~~~-------~~~~~plgiiP~ 205 (424)
+... + -|+ ....+|+..||.
T Consensus 120 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 120 VAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 4321 0 010 013689999997
No 21
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=90.34 E-value=2.4 Score=36.44 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+..-..+. ++....|+..|++|++.+. ..+....++++++...+.++|| ++|+.+-|--++.++
T Consensus 5 ~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 79 (163)
T 3ors_A 5 KVAVIM----GSSSDWKIM-QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASL 79 (163)
T ss_dssp CEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 455554 333333344 5788899999999998775 4456777888887766777654 789999999999999
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 80 t~ 81 (163)
T 3ors_A 80 TT 81 (163)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 22
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=89.24 E-value=2.8 Score=36.29 Aligned_cols=74 Identities=7% Similarity=0.109 Sum_probs=55.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvng 185 (424)
.++.||. |+.....+. ++....|+..|++|++.+. ..++...++++++...++++|| ++||.|-|--|+.+
T Consensus 13 P~V~Iim----GS~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 13 PLVGVLM----GSSSDWDVM-KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp CSEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CeEEEEe----CcHhHHHHH-HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 3566665 433334444 5788899999999998765 3456677888888767787654 78999999999999
Q ss_pred hhc
Q 014455 186 LLE 188 (424)
Q Consensus 186 L~~ 188 (424)
+..
T Consensus 88 ~t~ 90 (173)
T 4grd_A 88 KTT 90 (173)
T ss_dssp HCC
T ss_pred cCC
Confidence 964
No 23
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=89.23 E-value=0.47 Score=46.77 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=57.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--C--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--T--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..+...+ . . +.+++...|+.+++++.++.- . ......++++.+...++|.||++|| |++.++.-
T Consensus 31 ~~~~livtd~~~~~--~-g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 105 (386)
T 1rrm_A 31 YQKALIVTDKTLVQ--C-G-VVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCK 105 (386)
T ss_dssp CCEEEEECBHHHHH--T-T-HHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchhh--c-h-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 36899988654321 1 1 336889999999998765431 1 2234556666655568899999998 77777655
Q ss_pred Hhhc---CcC----cc-------cccCCcEEEecC
Q 014455 185 GLLE---RED----WN-------DAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~---~~~----~~-------~~~~~plgiiP~ 205 (424)
.+.. .+. |+ ....+|+..||.
T Consensus 106 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 106 AIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp HHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred HHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 5422 110 00 023689999997
No 24
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=88.51 E-value=0.45 Score=46.46 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=55.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..|.. . ... +++...|+..+ +.++.- .......++++.+...+.|.||++|| |++.++.-
T Consensus 34 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 104 (353)
T 3hl0_A 34 LSRALVLSTPQQ----K-GDA-EALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGK 104 (353)
T ss_dssp CCCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecCch----h-hHH-HHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHH
Confidence 367898887642 1 223 67888888754 333321 12234455555555568999999999 99998888
Q ss_pred HhhcCcCcccccCCcEEEecC
Q 014455 185 GLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~ 205 (424)
.+... ..+|+..||.
T Consensus 105 ~iA~~------~~~p~i~IPT 119 (353)
T 3hl0_A 105 AIALR------TDAAQIVIPT 119 (353)
T ss_dssp HHHHH------HCCEEEEEEC
T ss_pred HHHhc------cCCCEEEEeC
Confidence 77543 2689999997
No 25
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=88.42 E-value=2.9 Score=40.93 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC------hhhHHHHHHHhc---cCCCceEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~------~~~a~~l~~~~~---~~~~d~vV~vGGDGTl~ 180 (424)
+|++||.++...+ .+ +++...|+.+|+++.++.-.. .....++.+.+. .++.|.||++|| |++.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 7999999986532 24 579999999999876543211 123344444332 346799999999 7887
Q ss_pred HHHHHhhcCcCcccccCCcEEEecC
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
++.-.+...- ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 8776654211 12689999997
No 26
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=88.42 E-value=0.87 Score=45.24 Aligned_cols=90 Identities=20% Similarity=0.234 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++||..+.+-...+ +.+++...|+ ++++.++.- .......++++.+...++|.||++|| |++-++.-.
T Consensus 51 ~r~liVtd~~~~~~~g---~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 124 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTG---VLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKF 124 (408)
T ss_dssp CEEEEEECSSHHHHHS---HHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCchhhhcc---HHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 7899998765322111 2357888886 787765532 12234445555555568899999998 777776655
Q ss_pred hhc---CcC----cc--------cccCCcEEEecC
Q 014455 186 LLE---RED----WN--------DAIKVPLGVVPA 205 (424)
Q Consensus 186 L~~---~~~----~~--------~~~~~plgiiP~ 205 (424)
+.. .+. |+ ....+|+..||.
T Consensus 125 iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPT 159 (408)
T 1oj7_A 125 IAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLT 159 (408)
T ss_dssp HHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEES
T ss_pred HHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeC
Confidence 533 111 00 014689999997
No 27
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=88.08 E-value=3.4 Score=35.89 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+..-..+. ++....|+..|++|++.+. ..+....++++++...+.++|| ++|+.+-|--|+.++
T Consensus 9 ~V~Iim----gS~SD~~v~-~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 9 RVGVIM----GSDSDWPVM-ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp SEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 466664 333333344 5788899999999998775 4456777888877666677644 789999999999999
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 84 t~ 85 (174)
T 3lp6_A 84 TP 85 (174)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 28
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=88.05 E-value=4.3 Score=34.98 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=53.6
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+..-..+. ++....|+..|+.|++.+. ..++...++++++...+.++|| ++|+.+-|--++.++
T Consensus 7 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIM----GSKSDWSTM-KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAK 81 (166)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHT
T ss_pred eEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhc
Confidence 566664 333333344 5788899999999998775 3456677888888666677655 789999999999998
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 82 t~ 83 (166)
T 3oow_A 82 TT 83 (166)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 29
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=87.67 E-value=4.5 Score=35.11 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvng 185 (424)
.++.||. |+..-..+. ++....|+..|++|++.+. ..+++..++++++...+.++|| ++|+.+-|--++.+
T Consensus 13 ~~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 87 (174)
T 3kuu_A 13 VKIAIVM----GSKSDWATM-QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAA 87 (174)
T ss_dssp CCEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CcEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHh
Confidence 3577765 333333344 5788899999999998775 4556777888887766777654 78999999999999
Q ss_pred hhc
Q 014455 186 LLE 188 (424)
Q Consensus 186 L~~ 188 (424)
+..
T Consensus 88 ~t~ 90 (174)
T 3kuu_A 88 KTL 90 (174)
T ss_dssp TCS
T ss_pred ccC
Confidence 864
No 30
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=87.66 E-value=0.44 Score=46.62 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|++||..|.. . ... +++...|+.++ +.++.-. ......+.++.+...+.|.||++|| |++.++.-
T Consensus 36 ~~r~liVtd~~~----~-~~~-~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK 106 (358)
T 3jzd_A 36 AKRALVLCTPNQ----Q-AEA-ERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGK 106 (358)
T ss_dssp CSCEEEECCGGG----H-HHH-HHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCeEEEEeCCcH----H-HHH-HHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHH
Confidence 367999887642 1 233 67888888764 3333211 2234445555555568999999999 99998888
Q ss_pred HhhcCcCcccccCCcEEEecC
Q 014455 185 GLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~ 205 (424)
.+... ..+|+..||.
T Consensus 107 ~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 107 AIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEeC
Confidence 77543 2689999997
No 31
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=87.03 E-value=0.37 Score=47.45 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=55.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
+|++||..+..-+ ..+.+++...|+.+++.+.++.-+... ...++++.+.. +.|.||++|| |++.++.-.+.-
T Consensus 42 ~~~liVtd~~~~~----~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGG-Gsv~D~aK~iA~ 115 (376)
T 1kq3_A 42 ERAFVVIDDFVDK----NVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGG-GKTLDTAKAVAY 115 (376)
T ss_dssp SEEEEEECHHHHH----HTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEECccHHh----hccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHHH
Confidence 7899998764321 111256777787777655444333222 44455555555 8999999998 788888777753
Q ss_pred CcCcccccCCcEEEecC
Q 014455 189 REDWNDAIKVPLGVVPA 205 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~ 205 (424)
. ..+|+..||.
T Consensus 116 ~------~~~p~i~IPT 126 (376)
T 1kq3_A 116 K------LKKPVVIVPT 126 (376)
T ss_dssp H------TTCCEEEEES
T ss_pred h------cCCCEEEecC
Confidence 2 2689999997
No 32
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=86.48 E-value=4 Score=35.24 Aligned_cols=73 Identities=12% Similarity=0.075 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+.....+. ++....|+..|++|++.+. ..+++..++++++...+.++|| ++|+.+-|--++.++
T Consensus 8 ~V~Iim----gS~SD~~v~-~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 82 (169)
T 3trh_A 8 FVAILM----GSDSDLSTM-ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAH 82 (169)
T ss_dssp EEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHT
T ss_pred cEEEEE----CcHHhHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 466664 333333344 5788899999999998775 4456777888887766777654 789999999999998
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 83 t~ 84 (169)
T 3trh_A 83 TL 84 (169)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 33
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=83.50 E-value=5.3 Score=38.95 Aligned_cols=86 Identities=10% Similarity=0.045 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC-----ChhhHHHHHHHhcc---CCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-----QQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~-----~~~~a~~l~~~~~~---~~~d~vV~vGGDGTl 179 (424)
.+|++||.++...+. +.+++...|+.+ +++.++. .. .-....++.+.+.. ++.|.||++|| |++
T Consensus 34 ~~k~liVtd~~v~~~-----~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gsv 106 (368)
T 2gru_A 34 FDQYIMISDSGVPDS-----IVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GLT 106 (368)
T ss_dssp CSEEEEEEETTSCHH-----HHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HHH
T ss_pred CCEEEEEECCcHHHH-----HHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hHH
Confidence 579999999876432 446888889877 6664322 21 22233344433332 45799999998 888
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecC
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.++.-.....- ...+|+..||.
T Consensus 107 ~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 107 GNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHh----cCCCCEEEECC
Confidence 88776654210 02689999997
No 34
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=83.12 E-value=7.9 Score=33.83 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=53.8
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
.+.||. |+..-..+. ++....|+..|+++++.+. ..++...++++++...+.++|| ++||.+-|--|+.++
T Consensus 15 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 89 (183)
T 1o4v_A 15 RVGIIM----GSDSDLPVM-KQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASI 89 (183)
T ss_dssp EEEEEE----SCGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEe----ccHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhc
Confidence 445554 433334444 5788899999999998775 4556778888888766677654 789999999999999
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 90 t~ 91 (183)
T 1o4v_A 90 TH 91 (183)
T ss_dssp CS
T ss_pred cC
Confidence 54
No 35
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=82.77 E-value=6.9 Score=33.80 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=53.4
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+.....+. ++....|+..|++|++.+. ..++...++++++...+.++|| ++||.+-|--|+.++
T Consensus 13 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 87 (170)
T 1xmp_A 13 LVGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAK 87 (170)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTT
T ss_pred cEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 355554 433334444 5788899999999998775 4556777888887666677654 789999999999998
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 88 t~ 89 (170)
T 1xmp_A 88 TN 89 (170)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 36
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=81.74 E-value=9.1 Score=33.40 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=54.5
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGL 186 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL 186 (424)
++.||. |+..-..+. ++....|+..|++|++.+. ..+++..++++++...+.++|| ++||.+-|--|+.++
T Consensus 23 ~V~Iim----GS~SD~~v~-~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 97 (182)
T 1u11_A 23 VVGIIM----GSQSDWETM-RHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAAW 97 (182)
T ss_dssp SEEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHH
T ss_pred EEEEEE----CcHHHHHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHhc
Confidence 577765 333334344 5788899999999998775 4566777888887666677654 789999999999999
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 98 t~ 99 (182)
T 1u11_A 98 TR 99 (182)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 37
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=81.70 E-value=3.6 Score=39.84 Aligned_cols=85 Identities=12% Similarity=0.165 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcC-----ChhhHHHHHHHhccCCC---ceEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETT-----QQLHAKEIVKVLDLSKY---DGIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~-----~~~~a~~l~~~~~~~~~---d~vV~vGGDGTl~ 180 (424)
+|++||.++... . .+.+++...| .+| +++++ ... ......++.+.+...+. |.||++|| |++.
T Consensus 32 ~~~liVtd~~~~----~-~~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~ 103 (354)
T 1xah_A 32 DQSFLLIDEYVN----Q-YFANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATG 103 (354)
T ss_dssp SCEEEEEEHHHH----H-HHHHHHC--------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHH
T ss_pred CeEEEEECCcHH----H-HHHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHH
Confidence 689999886432 1 2446788888 777 44322 211 22344455555544455 89999998 7777
Q ss_pred HHHHHhhcCcCcccccCCcEEEecCC
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
++.-.+...- ...+|+..||.=
T Consensus 104 D~ak~vA~~~----~rgip~i~IPTT 125 (354)
T 1xah_A 104 DFAGFVAATL----LRGVHFIQVPTT 125 (354)
T ss_dssp HHHHHHHHHB----TTCCEEEEEECS
T ss_pred HHHHHHHHHh----ccCCCEEEECCc
Confidence 7766654210 126899999983
No 38
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=81.25 E-value=9.6 Score=33.20 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEE-EEcCCchHHHHHHHhh
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIV-CVSGDGILVEVVNGLL 187 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl~evvngL~ 187 (424)
+.||. |+.....+. ++....|++.|++|++.+. ..++...++++++...++++|| ++||.+-|--++.++-
T Consensus 25 V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 25 VGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp EEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred EEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 55665 444444444 5788999999999998764 4456677888888777787655 7899999999999875
Q ss_pred c
Q 014455 188 E 188 (424)
Q Consensus 188 ~ 188 (424)
.
T Consensus 100 ~ 100 (181)
T 4b4k_A 100 N 100 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 39
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=80.83 E-value=1.6 Score=42.31 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC----ChhhHHHHHHHhccCCC---ceEEEEcCCchHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKY---DGIVCVSGDGILVE 181 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~---d~vV~vGGDGTl~e 181 (424)
.+|++|+.++...+ .+.+++...|+.+++.+.++..- .-....++.+.+...+. |.||++|| |++.+
T Consensus 26 ~~~~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D 99 (343)
T 3clh_A 26 KQKALIISDSIVAG-----LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISD 99 (343)
T ss_dssp SSCEEEEEEHHHHT-----TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH-----HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHH
Confidence 46899998865432 23467788887665544333221 22344455555544455 99999998 77777
Q ss_pred HHHHhhcCcCcccccCCcEEEecC
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.-.+...- ...+|+..||.
T Consensus 100 ~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 100 MVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEeCC
Confidence 766554110 02689999995
No 40
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=80.45 E-value=14 Score=33.40 Aligned_cols=88 Identities=15% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
++.+.+.||+...+ ..--..++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+. .+.++.
T Consensus 5 ~~s~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 5 QSSKLIAVIVANID-DYFSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCCEEEEEESCTT-SHHHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCcEEEEEeCCCC-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 45567777764332 22222333 57888889999998887766432 234566666667999999999998 777877
Q ss_pred hhcCcCcccccCCcEEEecC
Q 014455 186 LLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~ 205 (424)
+... .+|+-.+-.
T Consensus 81 l~~~-------~iPvV~i~~ 93 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVDR 93 (276)
T ss_dssp HHTT-------SSCEEEESC
T ss_pred HHHC-------CCCEEEEec
Confidence 7654 677766643
No 41
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=80.21 E-value=0.77 Score=45.02 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|++|+..|.. . ..+ +++...|+. +.++.- .......+.++.+...+.|.||++|| |++.++.-.
T Consensus 38 ~rvliVtd~~~----~-~~~-~~v~~~L~~----~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~ 106 (364)
T 3iv7_A 38 AKVMVIAGERE----M-SIA-HKVASEIEV----AIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKA 106 (364)
T ss_dssp SSEEEECCGGG----H-HHH-HHHTTTSCC----SEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCCH----H-HHH-HHHHHHcCC----CEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 57888877642 1 223 456655652 222211 12344555555555578999999999 888888887
Q ss_pred hhcCcCcccccCCcEEEecC
Q 014455 186 LLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~ 205 (424)
+... ..+|+..||.
T Consensus 107 iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 107 IAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHH------HCCCEEEEEC
T ss_pred HHhc------cCCCEEEEcC
Confidence 7543 2689999997
No 42
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=79.13 E-value=5.2 Score=32.98 Aligned_cols=88 Identities=15% Similarity=0.187 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccC-CCceEEEEc---CC--chHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVS---GD--GILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~-~~d~vV~vG---GD--GTl~ev 182 (424)
+++++|++=...| .+.++ .+.+...+...|++++++...... .-+.. .+|.||++. |+ |.+...
T Consensus 1 M~ki~I~y~S~tG--nT~~~-A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~g~pty~~~~G~~p~~ 70 (148)
T 3f6r_A 1 MSKVLIVFGSSTG--NTESI-AQKLEELIAAGGHEVTLLNAADAS-------AENLADGYDAVLFGCSAWGMEDLEMQDD 70 (148)
T ss_dssp -CEEEEEEECSSS--HHHHH-HHHHHHHHHTTTCEEEEEETTTBC-------CTTTTTTCSEEEEEECEECSSSCEECHH
T ss_pred CCeEEEEEECCCc--hHHHH-HHHHHHHHHhCCCeEEEEehhhCC-------HhHhcccCCEEEEEecccCCCCCCCcHH
Confidence 3578888865544 45543 468888899899888877654321 01234 788877766 45 776655
Q ss_pred HHHhhcCcCcccccCCcEEEecCC
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~G 206 (424)
+..++.+-........+++++-.|
T Consensus 71 ~~~fl~~l~~~~l~~k~~~vfg~G 94 (148)
T 3f6r_A 71 FLSLFEEFDRIGLAGRKVAAFASG 94 (148)
T ss_dssp HHHHHTTGGGTCCTTCEEEEEEEE
T ss_pred HHHHHHHhhccCCCCCEEEEEEeC
Confidence 555554311111235677777443
No 43
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=76.36 E-value=15 Score=33.28 Aligned_cols=90 Identities=14% Similarity=0.075 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCc-hHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDG-Tl~evvng 185 (424)
+.+++.|++...+. .--..++ +.++..+++.|+++.+..+... ....++.+.+...++|+||+.+.|. ...+.++.
T Consensus 4 ~~~~Ig~i~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 4 EGKTIGITAIGTDH-DWDLKAY-QAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TTCEEEEEESCCSS-HHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCC-hHHHHHH-HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 45667777653332 2222233 5788889999999888766543 2234555666567899999999985 45566776
Q ss_pred hhcCcCcccccCCcEEEecCC
Q 014455 186 LLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~G 206 (424)
+... ++|+-.+-..
T Consensus 82 ~~~~-------~iPvV~~~~~ 95 (291)
T 3l49_A 82 INDA-------GIPLFTVDTA 95 (291)
T ss_dssp HHHT-------TCCEEEESCC
T ss_pred HHHC-------CCcEEEecCC
Confidence 6654 6777666443
No 44
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=75.45 E-value=17 Score=30.97 Aligned_cols=73 Identities=12% Similarity=0.212 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccC-CCceEE-EEcCCchHHHHHHH
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLS-KYDGIV-CVSGDGILVEVVNG 185 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~-~~d~vV-~vGGDGTl~evvng 185 (424)
++.||. |+.....+. ++....|+..|++|++.+. ..++...++++++... +.++|| ++|+.+-|--++.+
T Consensus 4 ~V~Iim----gs~SD~~v~-~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~ 78 (159)
T 3rg8_A 4 LVIILM----GSSSDMGHA-EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDG 78 (159)
T ss_dssp EEEEEE----SSGGGHHHH-HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHH
T ss_pred eEEEEE----CcHHHHHHH-HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHh
Confidence 455553 333333344 5788899999999998775 4456677888877643 477655 77999999999999
Q ss_pred hhc
Q 014455 186 LLE 188 (424)
Q Consensus 186 L~~ 188 (424)
+..
T Consensus 79 ~t~ 81 (159)
T 3rg8_A 79 FVK 81 (159)
T ss_dssp HSS
T ss_pred ccC
Confidence 964
No 45
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=75.38 E-value=8 Score=34.74 Aligned_cols=87 Identities=9% Similarity=0.142 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
.+.+.|++...+..- -..++ +.++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+..-.+.++.+.
T Consensus 2 s~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 2 TRTLGFILPDLENPS-YARIA-KQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CCEEEEEESCTTCHH-HHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred ceEEEEEeCCCcChh-HHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 456777765433222 22233 5788888999999888776642 33345566666678999999998854356666665
Q ss_pred cCcCcccccCCcEEEec
Q 014455 188 EREDWNDAIKVPLGVVP 204 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP 204 (424)
.. .+|+-.+-
T Consensus 80 ~~-------~iPvV~~~ 89 (272)
T 3o74_A 80 DK-------GLPVIAID 89 (272)
T ss_dssp HT-------TCCEEEES
T ss_pred Hc-------CCCEEEEc
Confidence 44 57776653
No 46
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=75.27 E-value=21 Score=32.90 Aligned_cols=87 Identities=13% Similarity=0.050 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~ 187 (424)
+++.|++...+...- ..++ +.++..+++.|+++.+..+... ....++.+.+...++|+||+.+-|.. +.+.+..+.
T Consensus 3 ~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW-QKDR-DIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTT-HHHH-HHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHH-HHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 456666643333222 2233 5788889999999888776533 22335566666678999999998875 367777776
Q ss_pred cCcCcccccCCcEEEecC
Q 014455 188 EREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~ 205 (424)
.. .+|+-.+-.
T Consensus 81 ~~-------~iPvV~~~~ 91 (313)
T 3m9w_A 81 QE-------GIKVLAYDR 91 (313)
T ss_dssp TT-------TCEEEEESS
T ss_pred HC-------CCeEEEECC
Confidence 54 577766644
No 47
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=75.13 E-value=14 Score=33.56 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=57.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchH-HHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVN 184 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl-~evvn 184 (424)
++.+++.|++...+.. --..++ +.++..+++.|+++.+..+.... ...+..+.+...++|+||+.+.|... .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHE-FAQRLI-NAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ---CEEEEEESCSCSH-HHHHHH-HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCcEEEEEEecCCcH-HHHHHH-HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 4556777777543322 222233 57888889999998887776432 33355666666789999999887653 46777
Q ss_pred HhhcCcCcccccCCcEEEecC
Q 014455 185 GLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~ 205 (424)
.+... ++|+-.+-.
T Consensus 84 ~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 84 EAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHc-------CCCEEEecC
Confidence 77654 677776643
No 48
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=74.47 E-value=16 Score=33.27 Aligned_cols=88 Identities=13% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.||+... ...-...+. +-++..+++.|+.+.+..+... ....++.+.+...+.|+||+.+.+.+ .+.+..
T Consensus 14 ~~s~~Igvi~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 14 KKTTTVGVIIPDI-SSIFYSELA-RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp --CCEEEEEESCT-TSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCeEEEEeCCC-CCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 4566788887432 221122233 5677888889998877766432 22345566666678999999987755 455666
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
+... .+|+-.+-
T Consensus 91 l~~~-------~iPvV~~~ 102 (289)
T 2fep_A 91 FKRS-------PVPIVLAA 102 (289)
T ss_dssp HHHS-------SSCEEEES
T ss_pred HHhc-------CCCEEEEc
Confidence 6433 57776663
No 49
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=73.88 E-value=13 Score=33.99 Aligned_cols=90 Identities=10% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvn 184 (424)
+.+++.+|+... ...--..++ +.++..+++.|+.+.+.. +. ......+..+.+...++|+||+.+.|.. +.+.+.
T Consensus 3 ~~~~I~~i~~~~-~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 3 LNETYMMITFQS-GMDYWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp --CEEEEEESST-TSTHHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred CCceEEEEEccC-CChHHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 345666666443 332223333 578888899999887743 32 2223334555655578999999998875 456777
Q ss_pred HhhcCcCcccccCCcEEEecCC
Q 014455 185 GLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~G 206 (424)
.+... .+|+-.+-..
T Consensus 81 ~~~~~-------~iPvV~~~~~ 95 (305)
T 3g1w_A 81 KAVDA-------GIPIVLFDSG 95 (305)
T ss_dssp HHHHT-------TCCEEEESSC
T ss_pred HHHHC-------CCcEEEECCC
Confidence 77654 5777766443
No 50
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=73.73 E-value=5.4 Score=38.23 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=40.3
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.-.++++.+...+.|.+|++|||||+.-+ +-|.+. .+|+--||.==-||+.-
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~ 133 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMGA-MRLTEM-------GFPCIGLPGTIDNDIKG 133 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEBCTTCCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHHH-HHHHhh-------CCCEEEEeccccCCCCC
Confidence 34556666766789999999999998654 555543 68999999988899874
No 51
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=73.05 E-value=22 Score=32.09 Aligned_cols=86 Identities=10% Similarity=0.176 Sum_probs=56.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch----HHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT----l~evvn 184 (424)
+.+.||+...+... -..++ +.++..+++.|+++.+..+... ....++.+.+...++|+||+.+.|.. ..+.+.
T Consensus 16 ~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYI-FPSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTT-HHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 66777765433322 22233 5788889999999888776543 33345666666679999999998863 346666
Q ss_pred HhhcCcCcccccCCcEEEec
Q 014455 185 GLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP 204 (424)
.+... .+|+-.+-
T Consensus 94 ~~~~~-------~iPvV~~~ 106 (298)
T 3tb6_A 94 NLEKN-------GIPFAMIN 106 (298)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHHhc-------CCCEEEEe
Confidence 66554 57776663
No 52
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=72.02 E-value=34 Score=33.94 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCC-c-eEEEEcCCchHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKY-D-GIVCVSGDGILVEVVN 184 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~-d-~vV~vGGDGTl~evvn 184 (424)
.++.||. |+..-..+. +++...|+..|+++++.+. ..+.+..++++++...+. + .|+++||.|.|--|+.
T Consensus 266 ~~V~Ii~----gs~SD~~~~-~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva 340 (425)
T 2h31_A 266 CRVVVLM----GSTSDLGHC-EKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340 (425)
T ss_dssp CEEEEEE----SCGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHH
T ss_pred CeEEEEe----cCcccHHHH-HHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHh
Confidence 4677765 333333344 5788899999999998775 445677788888876677 3 4557899999999999
Q ss_pred Hhhc
Q 014455 185 GLLE 188 (424)
Q Consensus 185 gL~~ 188 (424)
++..
T Consensus 341 ~~t~ 344 (425)
T 2h31_A 341 GNTA 344 (425)
T ss_dssp HHCS
T ss_pred ccCC
Confidence 9964
No 53
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=71.73 E-value=33 Score=32.01 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=53.8
Q ss_pred CcEEEEEEc--CCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVN--PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivN--P~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
..++.+|+. +...+.--...+ +-++..+++.|+++.+..+....+..+..+.+...++|+||++|..- .+.+..+
T Consensus 4 ~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~~--~~~~~~~ 80 (318)
T 2fqx_A 4 DFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFL--VEAVIET 80 (318)
T ss_dssp CCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTT--HHHHHHH
T ss_pred CcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChhH--HHHHHHH
Confidence 457888885 443321122234 46777888889988877776555555666777667899999998542 2333333
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... ..++|+.++-
T Consensus 81 a~~-----~p~~p~v~id 93 (318)
T 2fqx_A 81 SAR-----FPKQKFLVID 93 (318)
T ss_dssp HHH-----CTTSCEEEES
T ss_pred HHH-----CCCCEEEEEc
Confidence 321 0156777764
No 54
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=71.69 E-value=13 Score=33.76 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=57.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
++.+++.|++...+ ..-...++ +.++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+. ..+.+..
T Consensus 6 ~~~~~Igvv~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIE-NVFFAEVA-SGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCCcEEEEEECCCc-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 45667777774332 22222233 5788889999999888777543 3344566666667899999999887 4456665
Q ss_pred hhcCcCcccccCCcEEEecCC
Q 014455 186 LLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~G 206 (424)
+... .+|+-++-..
T Consensus 83 ~~~~-------~iPvV~~~~~ 96 (291)
T 3egc_A 83 ELPK-------TFPIVAVNRE 96 (291)
T ss_dssp SSCT-------TSCEEEESSC
T ss_pred hhcc-------CCCEEEEecc
Confidence 5443 6777766443
No 55
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=71.69 E-value=24 Score=33.15 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCCC-cchhhchHHHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhcc--CCCceEEEEcCCchHHHHHHH
Q 014455 110 KRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDL--SKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 110 ~~~~vivNP~sG~-~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~--~~~d~vV~vGGDGTl~evvng 185 (424)
+++. ++.|.... .-... +.+-++..+++.|+++.+..+..... ..+.++++.. .++|+||+++.+....+++..
T Consensus 4 ~~Ig-~i~p~~~~~~f~~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~ 81 (350)
T 3h75_A 4 TSVV-FLNPGNSTETFWVS-YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL 81 (350)
T ss_dssp CEEE-EEECSCTTCHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH
T ss_pred CEEE-EECCCCCCChHHHH-HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH
Confidence 3444 44555433 22222 33577888888999988876654322 2344555544 489999999744566677776
Q ss_pred hhcCcCcccccCCcEEEecCCC
Q 014455 186 LLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~GT 207 (424)
+... .+|+-.+-...
T Consensus 82 ~~~~-------giPvV~~~~~~ 96 (350)
T 3h75_A 82 SQGS-------GIKLFIVNSPL 96 (350)
T ss_dssp HTTS-------CCEEEEEESCC
T ss_pred HHhC-------CCcEEEEcCCC
Confidence 6554 57776664443
No 56
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=71.40 E-value=19 Score=32.98 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+..+|+.+|.+|... .+.... +.++..++++|+++.........+..+.++++. .+.|+|++ +.|.+.-.++..+
T Consensus 131 pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 205 (295)
T 3lft_A 131 PNVKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT-SKVDAIWV-PIDNTIASGFPTV 205 (295)
T ss_dssp TTCCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT-TTCSEEEE-CSCHHHHHTHHHH
T ss_pred CCCcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH-hcCCEEEE-CCchhHHHHHHHH
Confidence 456899999998542 233223 467888899999876554445566677777764 47887766 5788877666666
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
..
T Consensus 206 ~~ 207 (295)
T 3lft_A 206 VS 207 (295)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=71.12 E-value=12 Score=34.18 Aligned_cols=88 Identities=17% Similarity=0.111 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHH---HHHHhccCCCceEEEEcCCchHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKE---IVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~---l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
.+.+++.+++ |.....-...+. +-++..+++.|+++.+..+... ....+ +.+.+...++|+||+++.|.+ .+.
T Consensus 6 ~~~~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 6 QQLGIIGLFV-PTFFGSYYGTIL-KQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp --CCEEEEEC-SCSCSHHHHHHH-HHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCCeEEEEe-CCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 3455666665 433322222233 5677788889998877665432 22334 566666678999999998876 556
Q ss_pred HHHhhcCcCcccccCCcEEEec
Q 014455 183 VNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP 204 (424)
+..+... ++|+-.+-
T Consensus 83 ~~~l~~~-------~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLN 97 (290)
T ss_dssp HHHHHHH-------CSSEEEES
T ss_pred HHHHhhc-------CCCEEEEc
Confidence 6655432 57776663
No 58
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=71.10 E-value=25 Score=31.95 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=54.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
+++.||+. .....-...++ +-++..+++.|+ ++.+..+.. .....++.+.+...++|+||+.+.|.+ ..+.+..+
T Consensus 3 ~~Igvi~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 80 (309)
T 2fvy_A 3 TRIGVTIY-KYDDNFMSVVR-KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 80 (309)
T ss_dssp EEEEEEES-CTTSHHHHHHH-HHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHH
T ss_pred cEEEEEec-cCCcHHHHHHH-HHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHH
Confidence 45666653 32222222233 567788888897 777766543 233345566666678999999998876 45677766
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
... .+|+-.+-.
T Consensus 81 ~~~-------~iPvV~~~~ 92 (309)
T 2fvy_A 81 RGQ-------NVPVVFFNK 92 (309)
T ss_dssp HTT-------TCCEEEESS
T ss_pred HHC-------CCcEEEecC
Confidence 543 578776644
No 59
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=70.91 E-value=22 Score=32.41 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=54.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~ 188 (424)
.++.+++.-.+ ..--..+. +-++..+++.|+++.+..+.......+..+.+...++|+||+.+-|.. ..+.+..+..
T Consensus 3 ~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (306)
T 8abp_A 3 LKLGFLVKQPE-EPWFQTEW-KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306)
T ss_dssp EEEEEEESCTT-SHHHHHHH-HHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred eEEEEEeCCCC-chHHHHHH-HHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 45666664322 21122233 567788888898887776654444455666666678999999998875 3445666655
Q ss_pred CcCcccccCCcEEEec
Q 014455 189 REDWNDAIKVPLGVVP 204 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP 204 (424)
. .+|+-.+-
T Consensus 81 ~-------~iPvV~~~ 89 (306)
T 8abp_A 81 Y-------DMKVIAVD 89 (306)
T ss_dssp T-------TCEEEEES
T ss_pred C-------CCcEEEeC
Confidence 4 67776664
No 60
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=70.80 E-value=11 Score=36.88 Aligned_cols=87 Identities=9% Similarity=0.189 Sum_probs=49.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CC--hhhHHHHHHHhcc---CCCceEEEEcCCchHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDL---SKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~--~~~a~~l~~~~~~---~~~d~vV~vGGDGTl~ev 182 (424)
++++||..|.--+ ..+...|+.+++++.++.- .. .....++++.+.. .+.|.||++|| |++-++
T Consensus 54 ~~~liVtd~~~~~--------~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD~ 124 (375)
T 3rf7_A 54 DFVVFLVDDVHQH--------KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMDL 124 (375)
T ss_dssp CCEEEEEEGGGTT--------SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHHH
T ss_pred CeEEEEECchhhh--------hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHHH
Confidence 6788888754211 1355667777888765431 11 1233334433332 34999999999 777777
Q ss_pred HHHhhc---CcC-------cc--cccCCcEEEecC
Q 014455 183 VNGLLE---RED-------WN--DAIKVPLGVVPA 205 (424)
Q Consensus 183 vngL~~---~~~-------~~--~~~~~plgiiP~ 205 (424)
.-.+.. .+. |+ ....+|+..||.
T Consensus 125 AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 125 AKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 665532 110 00 112589999996
No 61
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=70.55 E-value=15 Score=33.35 Aligned_cols=91 Identities=7% Similarity=0.032 Sum_probs=57.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcC----ChhhHHHHHHHhccCCCceEEEEcCCch-HH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LV 180 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~----~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~ 180 (424)
.+.+++.||+.......--..++ +.++..+++. |+.+.+..+. .+....++.+.+...++|+||+.+-|.. ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQ-KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHH-HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CCcceEEEEecCCCCchHHHHHH-HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 45567777765541222222233 5778888888 8888876652 2333345566666679999999998874 45
Q ss_pred HHHHHhhcCcCcccccCCcEEEecC
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.+..+... ++|+-.+-.
T Consensus 85 ~~~~~~~~~-------~iPvV~~~~ 102 (304)
T 3gbv_A 85 GFTDALNEL-------GIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHH-------TCCEEEESS
T ss_pred HHHHHHHHC-------CCeEEEEeC
Confidence 667766553 577766644
No 62
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=70.45 E-value=21 Score=30.61 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=41.3
Q ss_pred HhhhhcCCCcEEEEEEcCCCC-------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc
Q 014455 101 DFIDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (424)
Q Consensus 101 ~~~~~~~r~~~~~vivNP~sG-------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (424)
+.|.-..+++.+.+|||-..= .+.+...=.+.++..|+..|++++++.--...+..+..+++.
T Consensus 24 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 93 (167)
T 1pyo_A 24 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFA 93 (167)
T ss_dssp GBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHH
T ss_pred ccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhh
Confidence 445545667888888875521 122322334689999999999988887666666666666554
No 63
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=70.16 E-value=19 Score=26.95 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=39.0
Q ss_pred HHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh
Q 014455 99 LRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (424)
Q Consensus 99 ~~~~~~~~-~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~ 162 (424)
|++.+.+. ...+.+.||+|-.|-+ . . .+.+..-+..|+.|++..++.+.+..+-++++
T Consensus 40 irdiiksmkdngkplvvfvngasqn--d---v-nefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQN--D---V-NEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHH--H---H-HHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcccc--c---H-HHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 34444433 3346699999965532 1 2 34556667789999999999999887766664
No 64
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=70.02 E-value=17 Score=33.05 Aligned_cols=89 Identities=9% Similarity=0.078 Sum_probs=54.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+++.|++.- ....-...+. +-++..+++.|+++.+..+.. .....++.+.+...++|+||+++.+.+-.+++..
T Consensus 18 ~~~~~Ig~i~~~-~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 18 GRTRSIGLVIPD-LENTSYTRIA-NYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCCEEEEEESC-SCSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCCcEEEEEeCC-CcCcHHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 455677777743 2221122233 567788888999888776653 2333455666666789999999987653335554
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
+... ++|+-.+-
T Consensus 96 ~~~~-------~iPvV~~~ 107 (293)
T 2iks_A 96 WAND-------PFPIVALD 107 (293)
T ss_dssp TTTS-------SSCEEEEE
T ss_pred HHhC-------CCCEEEEC
Confidence 4332 57776663
No 65
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=69.37 E-value=28 Score=31.38 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcC--CCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 107 ~r~~~~~vivNP--~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
.+.+++.+++.- .+.. -...++ +.++..+++.|+++.+..+.. +....++.+.+...++|+||+.+.|.+ .+.+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGI-YFSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHHHH-HHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred CCCceEEEEeCCcccCCc-hHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 345677777632 2221 112233 567778888898887765543 233345566665678999999998755 3455
Q ss_pred HHhhc-CcCcccccCCcEEEec
Q 014455 184 NGLLE-REDWNDAIKVPLGVVP 204 (424)
Q Consensus 184 ngL~~-~~~~~~~~~~plgiiP 204 (424)
..+.. . ++|+-.+-
T Consensus 94 ~~l~~~~-------~iPvV~~~ 108 (296)
T 3brq_A 94 DDIIDAH-------SQPIMVLN 108 (296)
T ss_dssp HHHHHTC-------SSCEEEES
T ss_pred HHHHhcC-------CCCEEEEc
Confidence 55544 2 57776663
No 66
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=69.13 E-value=20 Score=32.44 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~ 187 (424)
+++.+++ |.....-...++ +-++..+++.|+++.+..+.. +....+..+.+...++|+||+.+.+.. +.+.+..+.
T Consensus 3 ~~Ig~i~-~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 3 GKMAIVI-STLNNPWFVVLA-ETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp CEEEEEE-SCSSSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHH
T ss_pred eEEEEEe-CCCCChHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHH
Confidence 4566665 333222222233 567788888999887776643 233345566665678999999987754 345666654
Q ss_pred cCcCcccccCCcEEEec
Q 014455 188 EREDWNDAIKVPLGVVP 204 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP 204 (424)
.. ++|+-.+-
T Consensus 81 ~~-------~iPvV~~~ 90 (290)
T 2fn9_A 81 EA-------GIPVFCVD 90 (290)
T ss_dssp HT-------TCCEEEES
T ss_pred HC-------CCeEEEEe
Confidence 43 57776653
No 67
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=68.55 E-value=17 Score=32.52 Aligned_cols=86 Identities=10% Similarity=0.131 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+++.+++.-.+ ..-...++ +.++..+++.|+++.+..+.. +....++.+.+...+.|+||+.+.|.+ .+.+..+
T Consensus 2 ~s~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 78 (275)
T 3d8u_A 2 NAYSIALIIPSLF-EKACAHFL-PSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLL 78 (275)
T ss_dssp --CEEEEEESCSS-CHHHHHHH-HHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHH
T ss_pred CceEEEEEeCCCc-cccHHHHH-HHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHH
Confidence 3456777764322 21112233 567788888998887766543 233345566666678999999998765 3556555
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... ++|+-.+
T Consensus 79 ~~~-------~iPvV~~ 88 (275)
T 3d8u_A 79 EAS-------NTPVLEI 88 (275)
T ss_dssp HHH-------TCCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 432 5777666
No 68
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=68.33 E-value=26 Score=31.88 Aligned_cols=86 Identities=10% Similarity=0.117 Sum_probs=56.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+.+.+.||+ ..+..- -..++ +.++..+++.|+.+.+..+....+..+..+.+...+.|+||+++.|..- +.+..+
T Consensus 10 ~~~~~Igvi~-~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPF-HGDLV-EQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp ---CEEEEEE-ETTCHH-HHHHH-HHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCCEEEEEE-ecCCch-HHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 4567788888 433221 22233 5788889999999888877765445566677766789999999988764 556555
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
.. .+|+-.+-
T Consensus 86 ~~--------~iPvV~i~ 95 (289)
T 3k9c_A 86 AD--------RVPALVVA 95 (289)
T ss_dssp HT--------TSCEEEES
T ss_pred Hc--------CCCEEEEc
Confidence 32 46766653
No 69
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=67.97 E-value=2.4 Score=44.93 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC-c-----------
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD-G----------- 177 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD-G----------- 177 (424)
+|+.|++.+..|-.... + ..+...|+++|+++.++-.+....+-....+.+...||+||+.||- |
T Consensus 530 ~kVaIL~a~~dGfe~~E--~-~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQ--G-AKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CEEEEECCTTCHHHHHH--H-HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CEEEEEecCCCCCcHHH--H-HHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 57888876433322221 2 3688899999999998876543211111122233579999999993 3
Q ss_pred -------------hHHHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 178 -------------ILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 178 -------------Tl~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
.+-+++...+.. .-|||.|-.|..
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~-------gKpIaAIc~ap~ 643 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRF-------GKTVGALGSGSD 643 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHH-------TCEEEEEGGGHH
T ss_pred ccccchhhcccChHHHHHHHHHHHc-------CCEEEEECchHH
Confidence 244555555443 568888877653
No 70
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=67.92 E-value=40 Score=28.64 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=44.3
Q ss_pred hhchHHHHHHHHHhcCCeEEEEEc---CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 126 SKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 126 ~~~~~~~v~~~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
..+. ++....|+..|++|++.+. ..+++..++++++.. -=.|.++||.+-|--++.++..
T Consensus 12 ~~v~-~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~--~ViIa~AG~aa~Lpgvva~~t~ 74 (157)
T 2ywx_A 12 LKIA-EKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA--DVFIAIAGLAAHLPGVVASLTT 74 (157)
T ss_dssp HHHH-HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC--SEEEEEEESSCCHHHHHHTTCS
T ss_pred HHHH-HHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC--CEEEEEcCchhhhHHHHHhccC
Confidence 3344 5788899999999998775 345666677776542 2256688999999999999964
No 71
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=67.88 E-value=6 Score=37.92 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=43.1
Q ss_pred EEEEEcCCCCCcc-hhhchHHHHHHHHHhcCCeEEEEEcCC----------hhhHHHHHHHhccCCCceEEEE-cCCchH
Q 014455 112 LYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (424)
Q Consensus 112 ~~vivNP~sG~~~-a~~~~~~~v~~~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~vV~v-GGDGTl 179 (424)
-.-||-|.|+-+. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....++|+++ ||+|+.
T Consensus 14 ~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 92 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQV-EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSN 92 (327)
T ss_dssp EEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCGG
T ss_pred EEEEEeCCCCcCccCHHHH-HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhHH
Confidence 3457889887532 23334 456778999998876543322 2245566666666678888865 999973
No 72
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=67.88 E-value=11 Score=36.34 Aligned_cols=84 Identities=13% Similarity=0.079 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc-C---ChhhHHHHHHHhc---cCCCceEEEEcCCchHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T---QQLHAKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T-~---~~~~a~~l~~~~~---~~~~d~vV~vGGDGTl~e 181 (424)
.+|++|+.++... + +.+++...|+ .++. .++.- + .-....++.+.+. .++.|.||++|| |++.+
T Consensus 28 ~~kvliVtd~~v~-----~-~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRVE-----G-FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGGH-----H-HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHH-----H-HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 4689999886442 2 4467888887 5555 22221 1 2233444444333 245699999998 78888
Q ss_pred HHHHhhcCcCcccccCCcEEEecC
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.-.....- ...+|+..||.
T Consensus 99 ~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 99 LGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEecC
Confidence 776665210 12689999996
No 73
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=67.86 E-value=16 Score=33.20 Aligned_cols=89 Identities=10% Similarity=0.142 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCC----CCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 107 GRPKRLYIFVNPF----GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 107 ~r~~~~~vivNP~----sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.+.+++.||+... ....-...++ +.++..+++.|+.+.+..+....+ ..++.+.+...++|+||+++.+.+ .+
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~~ 83 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVI-RGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-DR 83 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHH-HHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-CH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hH
Confidence 4556677666440 2222222233 577888889998887766654333 234556666678999999988765 36
Q ss_pred HHHHhhcCcCcccccCCcEEEec
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP 204 (424)
.+..+... .+|+-.+-
T Consensus 84 ~~~~l~~~-------~iPvV~~~ 99 (292)
T 3k4h_A 84 IIQYLHEQ-------NFPFVLIG 99 (292)
T ss_dssp HHHHHHHT-------TCCEEEES
T ss_pred HHHHHHHC-------CCCEEEEC
Confidence 66666544 57776653
No 74
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=67.55 E-value=28 Score=31.72 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=51.2
Q ss_pred CcEEEEEEcCCC------CCcchhhchHHH--HHHHHHhcCCeEEEEEcCChh--------------------------h
Q 014455 109 PKRLYIFVNPFG------GKKIASKIFLDD--VKPLLEDANIQFTVQETTQQL--------------------------H 154 (424)
Q Consensus 109 ~~~~~vivNP~s------G~~~a~~~~~~~--v~~~l~~ag~~~~v~~T~~~~--------------------------~ 154 (424)
++|++|++-... |+..+-.. .+. ....|+++|+++++.-.+... +
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~-~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFF-SEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCH-HHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccH-HHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 578988886532 22222211 122 344688999999886543210 1
Q ss_pred HHHHHH------HhccCCCceEEEEcCCchHH-----HHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 155 AKEIVK------VLDLSKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 155 a~~l~~------~~~~~~~d~vV~vGGDGTl~-----evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
-..+.. +++.+.||+|++.||-|+.. +-+..++++- .....+++-|=.|.
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~---~~~gk~iaaIC~Gp 148 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDI---YKRGGVIGAVCHGP 148 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGGGCHHHHHHHHHH---HHTTCEEEEETTGG
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchhhhcccCHHHHHHHHHH---HHcCCEEEEEChHH
Confidence 112222 22335799999999999842 2222222211 01257888887776
No 75
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=67.53 E-value=27 Score=32.43 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvn 184 (424)
+..++.|++.. ...-...++ +-++..+++. |+++.+..+.. +....+..+.+...++|+||+.+.+.. +.+.+.
T Consensus 5 ~~~~Igvi~~~--~~~~~~~~~-~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 81 (325)
T 2x7x_A 5 PHFRIGVAQCS--DDSWRHKMN-DEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVE 81 (325)
T ss_dssp -CCEEEEEESC--CSHHHHHHH-HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEEecC--CCHHHHHHH-HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 45667776643 211111222 4566777777 88887766543 233345566665678999999988864 346666
Q ss_pred HhhcCcCcccccCCcEEEec
Q 014455 185 GLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP 204 (424)
.+... .+|+-.+-
T Consensus 82 ~~~~~-------~iPvV~~~ 94 (325)
T 2x7x_A 82 EAYQK-------GIPVILVD 94 (325)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHHHC-------CCeEEEeC
Confidence 66443 57776663
No 76
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=67.52 E-value=13 Score=34.15 Aligned_cols=89 Identities=7% Similarity=0.073 Sum_probs=56.5
Q ss_pred CCCcEEEEEEcCC---CCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 107 GRPKRLYIFVNPF---GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 107 ~r~~~~~vivNP~---sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
++.+.+.|++... ....--..++ +.++..+++.|+.+.+..+.......++.+.+...+.|+||+++.+.+- +.+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMI-SWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred CccceEEEEecCCCccccChhHHHHH-HHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 4556777777421 1111112233 5678888889999888887654445566666666789999999887543 566
Q ss_pred HHhhcCcCcccccCCcEEEec
Q 014455 184 NGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP 204 (424)
..+... .+|+-.+-
T Consensus 82 ~~l~~~-------~iPvV~~~ 95 (294)
T 3qk7_A 82 QYLQKQ-------NFPFLALG 95 (294)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHhC-------CCCEEEEC
Confidence 666543 57776653
No 77
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=67.30 E-value=6.1 Score=37.84 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=40.4
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
+.-.++++.+...+.|.+|++|||||+.- ++-|.+. .+|+--||.==-||+.-
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~-------~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHG-ALQLTRH-------GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHH-HHHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHH-HHHHHHh-------CCCEEEEeecccCCCCC
Confidence 34556666676678999999999999865 4455543 68888999988899874
No 78
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=67.11 E-value=30 Score=31.26 Aligned_cols=86 Identities=9% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+++.|++. .....-...++ +-++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+.+ .+.+..
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 6 AKTGMLLVMVS-NIANPFCAAVV-KGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp -CCCEEEEEES-CTTSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCCEEEEEeC-CCCCchHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 45567777764 32222222233 5677888889998877766432 22344556666678999999987755 355555
Q ss_pred hhcCcCcccccCCcEEEe
Q 014455 186 LLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 186 L~~~~~~~~~~~~plgii 203 (424)
|. . ++|+-.+
T Consensus 83 l~-~-------~iPvV~~ 92 (285)
T 3c3k_A 83 II-G-------AFPWVQC 92 (285)
T ss_dssp HH-T-------TSSEEEE
T ss_pred Hh-c-------CCCEEEE
Confidence 54 3 5676665
No 79
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=66.35 E-value=13 Score=34.01 Aligned_cols=87 Identities=8% Similarity=0.058 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC---hhhHHHHHHHhccCCCceEEEEcCCch-HHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~ev 182 (424)
++.+++.|++.-.+..-- ..+ .+-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.|.. +.+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~-~~~-~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYW-LSV-NYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHN 80 (304)
T ss_dssp --CCEEEEEESCSCSHHH-HHH-HHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTT
T ss_pred CCCcEEEEEeCCCCCcHH-HHH-HHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHH
Confidence 456778877754332211 222 3567788888999998888774 233445566665578999999988764 2344
Q ss_pred HHHhhcCcCcccccCCcEEEe
Q 014455 183 VNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgii 203 (424)
++.+. . .+|+-.+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55554 3 5777666
No 80
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=65.97 E-value=46 Score=31.04 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.+|+.-.+.. --..++ +.++..+++.|+.+.+..+... ....++.+.+...+.|+||+++-+.+- +.+..|
T Consensus 67 ~~~~Ig~i~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l 143 (344)
T 3kjx_A 67 RVNLVAVIIPSLSNM-VFPEVL-TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAML 143 (344)
T ss_dssp CCSEEEEEESCSSSS-SHHHHH-HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHH
T ss_pred CCCEEEEEeCCCCcH-HHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 345677776433322 222233 5788888889998887776543 333455666666789999999887654 555555
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-.+
T Consensus 144 ~~~-------~iPvV~i 153 (344)
T 3kjx_A 144 DAA-------GIPVVEI 153 (344)
T ss_dssp HHC-------SSCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 543 5777766
No 81
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=65.70 E-value=23 Score=32.63 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=50.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+..+|+.+|.+|... .+.... +.++..++++|+++.........+..+.++++. .+.|+|++ ..|.+.-.++..+
T Consensus 138 Pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 138 PNVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG-GGCSEEEE-CSCHHHHTTHHHH
T ss_pred CCCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh-ccCCEEEE-CCcHhHHHHHHHH
Confidence 456899999998642 233233 467888899999887655555566777777765 47887765 5787765544444
Q ss_pred h
Q 014455 187 L 187 (424)
Q Consensus 187 ~ 187 (424)
.
T Consensus 213 ~ 213 (302)
T 2qh8_A 213 I 213 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=65.36 E-value=9.8 Score=34.35 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=38.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
+|+++|.++..-. . ..+.+.|++.|++++++.....+. +-. +.+++|+||+.||-++
T Consensus 1 m~i~vi~h~~~e~------~-g~~~~~l~~~g~~~~~~~~~~~~~---~p~--~~~~~d~lii~GGp~~ 57 (236)
T 3l7n_A 1 MRIHFILHETFEA------P-GAYLAWAALRGHDVSMTKVYRYEK---LPK--DIDDFDMLILMGGPQS 57 (236)
T ss_dssp CEEEEEECCTTSC------C-HHHHHHHHHTTCEEEEEEGGGTCC---CCS--CGGGCSEEEECCCSSC
T ss_pred CeEEEEeCCCCCC------c-hHHHHHHHHCCCeEEEEeeeCCCC---CCC--CccccCEEEECCCCCC
Confidence 4788888765532 2 256678889999988776533211 111 1357999999999887
No 83
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=65.28 E-value=24 Score=32.83 Aligned_cols=79 Identities=14% Similarity=0.021 Sum_probs=48.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+|+.+|.. ... .+.... +.++..|+++|+++.. .......+....++++...+.|+|++++-|.....++..
T Consensus 134 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 134 NVKTVGYIGY-SDS--YGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3578887743 222 222223 5678889999987532 222222333344455544578999998878888888888
Q ss_pred hhcCc
Q 014455 186 LLERE 190 (424)
Q Consensus 186 L~~~~ 190 (424)
+.+..
T Consensus 210 ~~~~g 214 (362)
T 3snr_A 210 LRERG 214 (362)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 87653
No 84
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=65.02 E-value=10 Score=34.16 Aligned_cols=45 Identities=9% Similarity=0.026 Sum_probs=27.8
Q ss_pred cCCCcEEEEEE-cCCCC---CcchhhchHHHHHHHHHhcCCeEEEEEcCC
Q 014455 106 FGRPKRLYIFV-NPFGG---KKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (424)
Q Consensus 106 ~~r~~~~~viv-NP~sG---~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~ 151 (424)
...+++++||. .|.-+ +..... +.+.+...+++.|.++++..-..
T Consensus 22 ~~~M~kiLiI~gsp~~~~s~~s~n~~-L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 22 SNAMSNVLIINAMKEFAHSKGALNLT-LTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp --CCCCEEEEECCCCBTTBCSHHHHH-HHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cccCcceEEEEeCCCcccCCChHHHH-HHHHHHHHHhhCCCEEEEEECCC
Confidence 34567777777 77632 222233 44678888888899888776543
No 85
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.89 E-value=40 Score=31.37 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcC--CCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 107 ~r~~~~~vivNP--~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
.+.+.+.|++.. .+..- ...++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+..-.++.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIY-FSELL-FHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp -CCSEEEEEECTTTTSTTH-HHHHH-HHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCCEEEEEecCCcccChh-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 455677777754 22221 12233 57788889999988877765432 333456666667899999999887754454
Q ss_pred HHhhcCcCcccccCCcEEEec
Q 014455 184 NGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP 204 (424)
.-+... .+|+-++-
T Consensus 137 ~~~~~~-------~iPvV~~~ 150 (338)
T 3dbi_A 137 DIIDAH-------SQPIMVLN 150 (338)
T ss_dssp HHHHHC-------SSCEEEES
T ss_pred HHHHcC-------CCCEEEEc
Confidence 444332 56766654
No 86
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=64.33 E-value=53 Score=31.07 Aligned_cols=100 Identities=10% Similarity=0.132 Sum_probs=60.7
Q ss_pred EEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHH
Q 014455 82 FVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIV 159 (424)
Q Consensus 82 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~ 159 (424)
+.+...+...+....+.+.+.+ ..+|+.+|..... .+.... +.++..|+++|+++.... .....+....+
T Consensus 120 f~~~~~~~~~~~~~~~~l~~~~----g~~~iaii~~~~~---~g~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~ 191 (392)
T 3lkb_A 120 FLPTTSYSEQVVALLEYIAREK----KGAKVALVVHPSP---FGRAPV-EDARKAARELGLQIVDVQEVGSGNLDNTALL 191 (392)
T ss_dssp CEEECCHHHHHHHHHHHHHHHC----TTCEEEEEECSSH---HHHTTH-HHHHHHHHHHTCEEEEEEECCTTCCCCHHHH
T ss_pred EecCCChHHHHHHHHHHHHHhC----CCCEEEEEEeCCc---hhhhHH-HHHHHHHHHcCCeEEEEEeeCCCCcCHHHHH
Confidence 3344444455544444443322 2478888875322 122223 567888999998764332 22223444555
Q ss_pred HHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 160 KVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 160 ~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+++...++|+|++++.|.....++..+.+.
T Consensus 192 ~~l~~~~~dav~~~~~~~~a~~~~~~~~~~ 221 (392)
T 3lkb_A 192 KRFEQAGVEYVVHQNVAGPVANILKDAKRL 221 (392)
T ss_dssp HHHHHTTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 566556899999999888888888888765
No 87
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=63.68 E-value=33 Score=31.58 Aligned_cols=88 Identities=13% Similarity=0.051 Sum_probs=56.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
.+++.|++...+.. --..+. +-++..+++.|+++.+..+.... ...+..+.+...++|+||+.+-|.. ..+.+..+
T Consensus 3 ~~~Igvi~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSA-RWIDDG-NNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSST-HHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcch-HHHHHH-HHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 34566666543332 222233 57888899999988877765432 2234555555568999999999864 46677777
Q ss_pred hcCcCcccccCCcEEEecC
Q 014455 187 LEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~ 205 (424)
... .+|+-.+-.
T Consensus 81 ~~~-------giPvV~~~~ 92 (330)
T 3uug_A 81 GEQ-------GIKVIAYDR 92 (330)
T ss_dssp HHT-------TCEEEEESS
T ss_pred HHC-------CCCEEEECC
Confidence 654 577766643
No 88
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=63.62 E-value=6 Score=40.13 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCCcc-----hhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 110 KRLYIFVNPFGGKKI-----ASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~-----a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
.+++-|.|-..|=-+ -...-.+.+..++..-| ++.-|.+ ..+..++++.+...+.|.+|++|||||+.-+.
T Consensus 130 ~~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GG---TiLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~ 206 (487)
T 2hig_A 130 KRVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGG---TILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGAL 206 (487)
T ss_dssp SEEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSS---CSSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHH
T ss_pred cEEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCC---CeeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHH
Confidence 378888887777521 11111134555555444 1212221 11233566666666899999999999987432
Q ss_pred ---HHhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 184 ---NGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 184 ---ngL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
+.+.++ ..++++--||.==-||+.
T Consensus 207 ~L~e~~~~~-----g~~i~vVGIPkTIDNDl~ 233 (487)
T 2hig_A 207 VISQEAKRR-----GVDISVFGVPKTIDNDLS 233 (487)
T ss_dssp HHHHHHHHH-----TCCCEEEEEECCTTSSCC
T ss_pred HHHHHHHHh-----CCCceEEeccccccCCCC
Confidence 222222 136899999998889986
No 89
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=63.38 E-value=22 Score=31.01 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=43.2
Q ss_pred hhhcCCCcEEEEEEcCCC-------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE
Q 014455 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV 171 (424)
Q Consensus 103 ~~~~~r~~~~~vivNP~s-------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV 171 (424)
|.-..+|+.+.+|+|-.. ..+.+...=.+.++..|+..|++++++.--...+..+..+++.. ..+|.+|
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 333356677777776532 12222222336899999999999998877666676666666543 2456544
No 90
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=63.24 E-value=37 Score=31.50 Aligned_cols=88 Identities=13% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+++.+++.-.+ ..-...++ +.++..+++.|+.+.+..+.... ...++.+.+...++|+||+.+.+.+- +.+..
T Consensus 58 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 58 KKTTTVGVIIPDIS-NIFYAELA-RGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp C-CCEEEEEEC--C-CSHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHHH-HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 34556777764322 22222233 57788888899988777665432 23456667666789999999887653 56666
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
+... ++|+-.+-
T Consensus 135 l~~~-------~iPvV~~~ 146 (332)
T 2hsg_A 135 LKKS-------PVPVVLAA 146 (332)
T ss_dssp HTTS-------SSCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 5432 57776663
No 91
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=63.18 E-value=43 Score=31.17 Aligned_cols=87 Identities=8% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.||+...+..-- ..++ +.++..+++.|+.+.+..+... ....++.+.+...+.|+||+++-+.+- +.+..
T Consensus 60 ~~~~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVF-LETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp ---CEEEEEESCSTTCTT-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCCEEEEEeCCCCCHHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 345567777744333222 2233 5788889999998887776543 334456666666799999999876543 44555
Q ss_pred hhcCcCcccccCCcEEEe
Q 014455 186 LLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 186 L~~~~~~~~~~~~plgii 203 (424)
+... .+|+-++
T Consensus 137 l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 137 LSQH-------ALPVVYM 147 (339)
T ss_dssp HHHT-------TCCEEEE
T ss_pred HhcC-------CCCEEEE
Confidence 5443 5777666
No 92
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=62.67 E-value=42 Score=30.08 Aligned_cols=88 Identities=9% Similarity=0.142 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+++.+++ |.....-... +.+.++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+.+ .+++..|
T Consensus 6 ~~~~Ig~i~-~~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 82 (289)
T 1dbq_A 6 HTKSIGLLA-TSSEAAYFAE-IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAML 82 (289)
T ss_dssp --CEEEEEE-SCTTSHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHHH
T ss_pred CCCEEEEEe-CCCCChHHHH-HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHHH
Confidence 445676666 3332222222 23567778888899887766543 233345566666678999999998864 2344444
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... .++|+-.+-
T Consensus 83 ~~~------~~iPvV~~~ 94 (289)
T 1dbq_A 83 EEY------RHIPMVVMD 94 (289)
T ss_dssp HHT------TTSCEEEEE
T ss_pred Hhc------cCCCEEEEc
Confidence 321 156766653
No 93
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=62.23 E-value=22 Score=29.83 Aligned_cols=61 Identities=8% Similarity=0.144 Sum_probs=40.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
.++++||+-... |...++. +.|..-|...|++++++......+..++..++. ++|.||+..
T Consensus 4 ~~kv~IvY~S~~--GnT~~iA-~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gs 64 (159)
T 3fni_A 4 ETSIGVFYVSEY--GYSDRLA-QAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGM 64 (159)
T ss_dssp CCEEEEEECTTS--TTHHHHH-HHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEEC
T ss_pred CCEEEEEEECCC--hHHHHHH-HHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEc
Confidence 357888886554 4445444 678888988999888776554324455555543 688887664
No 94
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=61.89 E-value=43 Score=31.48 Aligned_cols=87 Identities=10% Similarity=0.147 Sum_probs=54.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.|++...+ ..--..++ +.++..+++.|+.+.+..+.. .....++.+.+...+.|+||+++.+.+- +.+..
T Consensus 68 ~~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~ 144 (355)
T 3e3m_A 68 KRSGFVGLLLPSLN-NLHFAQTA-QSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QTIRL 144 (355)
T ss_dssp ---CEEEEEESCSB-CHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HHHHH
T ss_pred CCCCEEEEEeCCCC-chHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHH
Confidence 34456776664332 22222233 578888899999988877754 3334456666666789999999987763 55666
Q ss_pred hhcCcCcccccCCcEEEe
Q 014455 186 LLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 186 L~~~~~~~~~~~~plgii 203 (424)
|... .+|+-.+
T Consensus 145 l~~~-------~iPvV~i 155 (355)
T 3e3m_A 145 LQRA-------SIPIVEI 155 (355)
T ss_dssp HHHC-------CSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 6543 6787776
No 95
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=61.55 E-value=21 Score=32.41 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=45.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+.+++.+++ |.....-...+. +.++..+++.|+++.+. .+.. .....++.+.+...+.|+||+.+.+.+ .+.+.
T Consensus 6 ~~~~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 6 KSSNVIAAVV-SSVRTNFAQQIL-DGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp --CCEEEEEC-CCCSSSHHHHHH-HHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred ccCCEEEEEe-CCCCChHHHHHH-HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 3455666666 332222222233 56778888899887766 4432 222234556666678999999998765 34555
Q ss_pred HhhcCcCcccccCCcEEEecC
Q 014455 185 GLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~ 205 (424)
.+... ++|+-.+-.
T Consensus 83 ~l~~~-------~iPvV~~~~ 96 (290)
T 3clk_A 83 LLQSS-------DVPYCFLSM 96 (290)
T ss_dssp HHHCC---------CEEEESC
T ss_pred HHHhC-------CCCEEEEcC
Confidence 55432 577766643
No 96
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=61.37 E-value=95 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc-CCchHHHHH-----HHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDGTl~evv-----ngL~~~~~~~~~~~~plgiiP 204 (424)
+.+...|+..+++++...... .-+..|.+.+...++|.||+.. |-+.+.+.+ ..++.+ ..+|+-++|
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pvLvv~ 289 (294)
T 3loq_A 217 RVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRR------SPVPVFVCK 289 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHH------CSSCEEEEC
T ss_pred HHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhc------CCCCEEEEC
Confidence 578888988998877655443 4455666666556788766543 556565543 444443 378999998
Q ss_pred CCC
Q 014455 205 AGT 207 (424)
Q Consensus 205 ~GT 207 (424)
-+.
T Consensus 290 ~~~ 292 (294)
T 3loq_A 290 RGD 292 (294)
T ss_dssp SCT
T ss_pred CCC
Confidence 753
No 97
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=61.25 E-value=30 Score=30.93 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=54.2
Q ss_pred CCcEEEEEEcCCC---CCcchhhchHHHHHHHHHhcCCeEEEEEcCCh---------------hhHHHH-H---------
Q 014455 108 RPKRLYIFVNPFG---GKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---------------LHAKEI-V--------- 159 (424)
Q Consensus 108 r~~~~~vivNP~s---G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~---------------~~a~~l-~--------- 159 (424)
.+++++|++-..+ |- .... + -.....|+.+|+++++.-.+.. .+...+ +
T Consensus 5 ~m~kv~ill~~~~~~~g~-~~~E-~-~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~ 81 (232)
T 1vhq_A 5 TMKKIGVILSGCGVYDGS-EIHE-A-VLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIR 81 (232)
T ss_dssp -CCEEEEECCSBSTTTSB-CHHH-H-HHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCE
T ss_pred cCCeEEEEEccCCCCCCe-eHHH-H-HHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCC
Confidence 3578888776111 21 1111 1 1334678899998887654321 111111 1
Q ss_pred --HHhccCCCceEEEEcCCchH---------------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 160 --KVLDLSKYDGIVCVSGDGIL---------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 160 --~~~~~~~~d~vV~vGGDGTl---------------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.+++.+.||.|++.||-|.. ++-+..++++- .....+++-|=.|+. .+|+.|
T Consensus 82 ~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~gk~vaaIC~G~~-~La~aL 150 (232)
T 1vhq_A 82 PLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAM---HQAGKPLGFMCIAPA-MLPKIF 150 (232)
T ss_dssp EGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHH---HHTTCCEEEETTGGG-GHHHHC
T ss_pred CHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHH---HHcCCEEEEECHHHH-HHHHHh
Confidence 12223479999999998862 23222222211 012678998888876 566665
No 98
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=61.15 E-value=12 Score=36.16 Aligned_cols=73 Identities=16% Similarity=0.157 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCcc---hhhchHHHHHHHHHhcCCeEEEEEcCCh----------hhHHHHHHHhccCCCceEEEE-cCCc
Q 014455 112 LYIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCV-SGDG 177 (424)
Q Consensus 112 ~~vivNP~sG~~~---a~~~~~~~v~~~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~vV~v-GGDG 177 (424)
-.-|+-|.|+-.. ....+ +.....|+..|+++.+..+-.. ..|.++.+.+.....++|+|+ ||+|
T Consensus 7 ~I~ivaPSs~~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 85 (346)
T 4eys_A 7 TIGIVSLSSGIIGEDFVKHEV-DLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGDD 85 (346)
T ss_dssp EEEEECSSCCGGGSGGGHHHH-HHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCSC
T ss_pred EEEEEeCCCcccccccCHHHH-HHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccC
Confidence 3457899987531 12234 4667789999988876544332 234455555555678888765 9999
Q ss_pred hHHHHHHHh
Q 014455 178 ILVEVVNGL 186 (424)
Q Consensus 178 Tl~evvngL 186 (424)
+. +++..|
T Consensus 86 ~~-rlLp~L 93 (346)
T 4eys_A 86 TY-RLLPYL 93 (346)
T ss_dssp GG-GGHHHH
T ss_pred HH-HHHHHh
Confidence 74 455555
No 99
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=60.78 E-value=36 Score=31.52 Aligned_cols=85 Identities=13% Similarity=0.233 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 95 WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 95 w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
..+.+++. .+..+++.||+||...+... ..+.++..++..|+++.........+..+..+.+. .+.|+|+ +.
T Consensus 129 ~l~l~~~l---~P~~k~vgvi~~~~~~~s~~---~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~-~~~d~i~-~~ 200 (302)
T 3lkv_A 129 HVELIKEI---LPNVKSIGVVYNPGEANAVS---LMELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIY-AL 200 (302)
T ss_dssp HHHHHHHH---STTCCEEEEEECTTCHHHHH---HHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH-TTCSEEE-EC
T ss_pred HHHHHHHh---CCCCCEEEEEeCCCcccHHH---HHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc-CCeeEEE-Ee
Confidence 34444444 35678999999986543222 23578888889999887666666777777666664 5677765 56
Q ss_pred CCchHHHHHHHhh
Q 014455 175 GDGILVEVVNGLL 187 (424)
Q Consensus 175 GDGTl~evvngL~ 187 (424)
.|+++......+.
T Consensus 201 ~d~~~~~~~~~i~ 213 (302)
T 3lkv_A 201 IDNTVASAIEGMI 213 (302)
T ss_dssp SCHHHHHTHHHHH
T ss_pred CCcchhhHHHHHH
Confidence 7888876666554
No 100
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=60.66 E-value=36 Score=31.92 Aligned_cols=79 Identities=9% Similarity=-0.058 Sum_probs=51.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE-EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~-~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
..+++.+|+.+....+. .. .+.++..|++.|+++... ......+....++++...+.|+|++.+-|.....++..+
T Consensus 148 g~~~iaii~~~~~~~~~--~~-~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSV--GL-SNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHH--HH-HHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHH--HH-HHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 35789988754332222 22 256788899999876432 332333444556666557899999988888888888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 225 ~~~ 227 (366)
T 3td9_A 225 RQL 227 (366)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 101
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=60.62 E-value=45 Score=31.22 Aligned_cols=78 Identities=6% Similarity=0.002 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|... . ..+.... +.++..|+++|+++... ......+....++++...+.|+|++.+-|...-.++..
T Consensus 150 g~~~ia~i~~~-~--~~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~ 225 (375)
T 4evq_A 150 GLKKAVTVTWK-Y--AAGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKD 225 (375)
T ss_dssp TCCEEEEEEES-S--HHHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHH
T ss_pred CCcEEEEEecC-c--hHHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 45788888632 2 1222223 57788899999876322 22222333444555544578999998999888888888
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 226 ~~~~ 229 (375)
T 4evq_A 226 YAAA 229 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 102
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=60.32 E-value=82 Score=29.06 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.0
Q ss_pred cEEEEEEcCC-CCCcchhhchHHHHHHHHHhcCCeEEEEE--cC---ChhhHHHHHHHhccCCCceEEEEcCCch-HHHH
Q 014455 110 KRLYIFVNPF-GGKKIASKIFLDDVKPLLEDANIQFTVQE--TT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (424)
Q Consensus 110 ~~~~vivNP~-sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~ev 182 (424)
+++.|++ |. ....-...+. +.++..+++.|+.+.+.. +. ......+..+.+...++|+||+ .+|.. ..+.
T Consensus 44 ~~Igvi~-~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~ 120 (342)
T 1jx6_A 44 IKISVVY-PGQQVSDYWVRNI-ASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKF 120 (342)
T ss_dssp EEEEEEE-CCCSSCCHHHHHH-HHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHH
T ss_pred eEEEEEe-cCCcccHHHHHHH-HHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHH
Confidence 4565555 43 2222222233 577888888998877663 44 3333345566666678999999 66654 3566
Q ss_pred HHHhhc
Q 014455 183 VNGLLE 188 (424)
Q Consensus 183 vngL~~ 188 (424)
+..+..
T Consensus 121 ~~~~~~ 126 (342)
T 1jx6_A 121 VEHVLD 126 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 103
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=60.26 E-value=63 Score=28.96 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=64.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHH------------hccCCCceEEEEcCC
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGD 176 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~vV~vGGD 176 (424)
.++++|| |.|+.. ..++ ..|.++|..+.++..+......+++++ -+++++|.||++-||
T Consensus 31 gk~VLVV-----GgG~va---~~ka-~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d 101 (223)
T 3dfz_A 31 GRSVLVV-----GGGTIA---TRRI-KGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND 101 (223)
T ss_dssp TCCEEEE-----CCSHHH---HHHH-HHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC
T ss_pred CCEEEEE-----CCCHHH---HHHH-HHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC
Confidence 3556665 555432 1234 445567888888766655555566543 134578999999999
Q ss_pred chHHHHHHHhhcCcCccc-----------------ccCCcEEEecCCChhhhhhhhc
Q 014455 177 GILVEVVNGLLEREDWND-----------------AIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 177 GTl~evvngL~~~~~~~~-----------------~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
-.+|+.+-.+.++.-+-. ...+.+||--.|.+=.+|+.+.
T Consensus 102 ~~~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR 158 (223)
T 3dfz_A 102 QAVNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIK 158 (223)
T ss_dssp THHHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHH
Confidence 999999998866421100 1146688888888888888773
No 104
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=60.13 E-value=36 Score=29.02 Aligned_cols=66 Identities=14% Similarity=0.261 Sum_probs=41.2
Q ss_pred cCCCcEEEEEEcCC--------------CCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCc
Q 014455 106 FGRPKRLYIFVNPF--------------GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYD 168 (424)
Q Consensus 106 ~~r~~~~~vivNP~--------------sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d 168 (424)
..+|+.+.+|||-. =..+.+...=.+.+...|+..|++++++.--...+..+..+++.. ..+|
T Consensus 19 ~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~~~d 98 (164)
T 1qtn_A 19 KSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHSNMD 98 (164)
T ss_dssp CCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTCS
T ss_pred CCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhccCCC
Confidence 34567787787742 012222222336899999999999988876666666666665532 3466
Q ss_pred eEE
Q 014455 169 GIV 171 (424)
Q Consensus 169 ~vV 171 (424)
.+|
T Consensus 99 c~v 101 (164)
T 1qtn_A 99 CFI 101 (164)
T ss_dssp CEE
T ss_pred EEE
Confidence 544
No 105
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=59.99 E-value=26 Score=32.10 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
+.++.|++ |..+..-...++ +-++..+++.|+++.+..+.. +....++.+.+...+.|+||+.+.|.. +.+.+..+
T Consensus 2 ~~~Ig~i~-~~~~~~~~~~~~-~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 2 PLTVGFSQ-VGSESGWRAAET-NVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CCEEEEEE-CCCCSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred CeEEEEEe-CCCCCHHHHHHH-HHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 34555554 443332222223 467778888999887776643 223344556665568999999988764 35666666
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... .+|+-.+-
T Consensus 80 ~~~-------~iPvV~~~ 90 (306)
T 2vk2_A 80 KDA-------EIPVFLLD 90 (306)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCCEEEec
Confidence 543 57776653
No 106
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=59.86 E-value=8.6 Score=40.64 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH-HHHHHHhccCCCceEEEEcCC-c----------
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGD-G---------- 177 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a-~~l~~~~~~~~~d~vV~vGGD-G---------- 177 (424)
||+.||+.. |...... + ..+...|+++|+.++++-++.. +. .....++....||+||+.||- |
T Consensus 538 rKVaILvad--G~fE~~E-l-~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~ 612 (688)
T 3ej6_A 538 LRVGVLSTT--KGGSLDK-A-KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSP 612 (688)
T ss_dssp CEEEEECCS--SSSHHHH-H-HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCT
T ss_pred CEEEEEccC--CCccHHH-H-HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCChhcCcEEEECCCcccccccccchhh
Confidence 678888764 2122222 2 3678889999999998876543 22 111112223469999999993 3
Q ss_pred -----hHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 178 -----ILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 178 -----Tl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
-+-++|...+.+ ..|||.|-.|
T Consensus 613 Lr~~~~a~~fV~e~~~h-------gKpIAAIchg 639 (688)
T 3ej6_A 613 LFPAGRPSQILTDGYRW-------GKPVAAVGSA 639 (688)
T ss_dssp TSCTTHHHHHHHHHHHT-------TCCEEEEGGG
T ss_pred hccCHHHHHHHHHHHHc-------CCEEEEeCcc
Confidence 344555555554 5788888665
No 107
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=59.10 E-value=11 Score=35.99 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=37.5
Q ss_pred HHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 156 ~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.++++.+...+.|.++++|||||+..+ +.|.+. .+|+--||.==-||+.-
T Consensus 83 ~~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~~-------~i~vigiPkTIDNDl~~ 132 (319)
T 4a3s_A 83 EKGIANLKKLGIEGLVVIGGDGSYMGA-KKLTEH-------GFPCVGVPGTIDNDIPG 132 (319)
T ss_dssp HHHHHHHHHHTCCEEEEEECTTHHHHH-HHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhcc-------CCcEEEeeccccCCCCC
Confidence 345555555689999999999998754 455543 68888999888888864
No 108
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=58.98 E-value=34 Score=32.22 Aligned_cols=87 Identities=14% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+.+.+.||+. .....-...++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+.+ .+.+..|
T Consensus 65 ~s~~Igvi~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 65 RSNTIGVIVP-SLINHYFAAMV-TEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp ---CEEEEES-CSSSHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCCEEEEEeC-CCCCcHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 3456777763 32221122233 5677888889998887766542 23345566666678999999998766 4566666
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... .+|+-.+-
T Consensus 142 ~~~-------~iPvV~i~ 152 (348)
T 3bil_A 142 QKQ-------GMPVVLVD 152 (348)
T ss_dssp HHC--------CCEEEES
T ss_pred HhC-------CCCEEEEc
Confidence 443 57776663
No 109
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=58.78 E-value=26 Score=31.93 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEec
Q 014455 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgiiP 204 (424)
+-++..+++.|+++.+..+. .+....+..+.+...++|+||+.+-|.. +.+.+..+... .+|+-.+-
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~~ 93 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKL-------NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHH-------TCCEEEES
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHC-------CCCEEEEc
Confidence 57788888899998877765 4444445666666678999999888765 35556666543 56766653
No 110
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=58.72 E-value=33 Score=30.68 Aligned_cols=88 Identities=9% Similarity=0.172 Sum_probs=52.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHH-
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN- 184 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn- 184 (424)
.+.+++.|++...+ ..-...++ +.++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.| .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 6 RKSKLIGLLLPDMS-NPFFTLIA-RGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ----CEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CCCCEEEEEECCCC-CHHHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 34456776664332 22222333 5778888899999888776543 233456666666789999999844 45566
Q ss_pred HhhcCcCcccccCCcEEEecCC
Q 014455 185 GLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~G 206 (424)
.+... .+|+-.+-..
T Consensus 81 ~l~~~-------~iPvV~~~~~ 95 (277)
T 3e61_A 81 TLTDH-------HIPFVFIDRI 95 (277)
T ss_dssp HHHHC--------CCEEEGGGC
T ss_pred HHHcC-------CCCEEEEecc
Confidence 66543 5777666443
No 111
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=58.67 E-value=51 Score=28.12 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=44.0
Q ss_pred CcEEEEEE--cCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccC-CCceEEEEcCCch-----
Q 014455 109 PKRLYIFV--NPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGI----- 178 (424)
Q Consensus 109 ~~~~~viv--NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~vV~vGGDGT----- 178 (424)
+.++.||. |. .|.... .-...+...|++.|+++.. +.....+...+..+++..+ ++|.||+.||=|.
T Consensus 10 ~~~v~Ii~tGdE-~g~i~D--~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~ 86 (172)
T 1mkz_A 10 PTRIAILTVSNR-RGEEDD--TSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQ 86 (172)
T ss_dssp CCEEEEEEECSS-CCGGGC--HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCC
T ss_pred CCEEEEEEEeCC-CCcccC--ccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCC
Confidence 34666555 44 333221 1224688899999987643 3344444444444554333 5999999999763
Q ss_pred HHHHHHHhhc
Q 014455 179 LVEVVNGLLE 188 (424)
Q Consensus 179 l~evvngL~~ 188 (424)
..|++..++.
T Consensus 87 t~ea~~~~~~ 96 (172)
T 1mkz_A 87 APEALLPLFD 96 (172)
T ss_dssp HHHHHGGGCS
T ss_pred HHHHHHHHhc
Confidence 3445444433
No 112
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=58.43 E-value=34 Score=30.80 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCchHH-----HHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~-----evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
+.||+|++.||-|... +-+..++++- .....+++-|=.|+. .+|..
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~---~~~gk~vaaIC~G~~-~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEI---YANGGVVAAVCHGPA-IFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHH---HHTTCEEEEETTGGG-GGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHH---HHcCCEEEEECCCHH-HHHhc
Confidence 4699999999988642 2222222211 112678888888876 55554
No 113
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=58.39 E-value=45 Score=30.23 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=24.4
Q ss_pred CCCceEEEEcCCchHH-----HHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 165 ~~~d~vV~vGGDGTl~-----evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.||+|++.||-|... +-+..++++- .....+++-|=.|.
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~---~~~gk~iaaIC~G~ 141 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKI---YANGGVIAAICHGP 141 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHH---HHTTCEEEEETTGG
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHH---HHcCCEEEEECHHH
Confidence 5799999999999742 2222222211 01257888887775
No 114
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=58.25 E-value=11 Score=32.69 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=52.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-----hHH-HH-----HHHhccCCCceEEEEcC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----HAK-EI-----VKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-----~a~-~l-----~~~~~~~~~d~vV~vGG 175 (424)
.+++++.|++-|..- ... + ......|+.+++++++.-.+... +.. .+ ..++....||.||+.||
T Consensus 21 ~~~~kV~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 21 GLSKKIAVLITDEFE---DSE-F-TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TCCCEEEEECCTTBC---THH-H-HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred ccCCEEEEEECCCCC---HHH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 457789988886322 111 2 24567788999888776543311 000 00 01222247999999999
Q ss_pred CchH--------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 176 DGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 176 DGTl--------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.|.- .+.+..... ...+++-|=.|.. .+|+.
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aIC~G~~-lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVN-------SGKPVFAICHGPQ-LLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHH-------TTCCEEEETTTHH-HHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHH-------cCCEEEEECHHHH-HHHHC
Confidence 7642 112222222 2578888888864 45543
No 115
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=58.10 E-value=29 Score=32.23 Aligned_cols=89 Identities=7% Similarity=-0.023 Sum_probs=53.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCC--CceEEEEcCCch-HHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSK--YDGIVCVSGDGI-LVEV 182 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~--~d~vV~vGGDGT-l~ev 182 (424)
.+.+++.+++.-.+ ..-... +.+.++..+++.|+++.+..+... ....++.+.+...+ +|+||+.+.|.. +.+.
T Consensus 3 ~~s~~Igvi~~~~~-~~~~~~-~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 3 LGQTTLACSFRSLT-NPYYTA-FNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCCEEEEEESCTT-SHHHHH-HHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred CCccEEEEEecCCC-cHHHHH-HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 34566777764322 211122 235677888889998887766532 22334556655567 999999988764 3355
Q ss_pred HHHhhcCcCcccccCCcEEEec
Q 014455 183 VNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP 204 (424)
+..+... .+|+-.+-
T Consensus 81 ~~~~~~~-------~iPvV~~~ 95 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIW 95 (332)
T ss_dssp HHHHHHH-------TCEEEEES
T ss_pred HHHHHHC-------CCeEEEEC
Confidence 6655432 57766653
No 116
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=57.80 E-value=64 Score=30.55 Aligned_cols=79 Identities=8% Similarity=-0.040 Sum_probs=46.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHH--hccCCCceEEEEcCCchHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKV--LDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~--~~~~~~d~vV~vGGDGTl~evv 183 (424)
..+++.+|..+... .+.... +.++..|+++|+++.... .....+....+.+ +...+.|+|++.+-......++
T Consensus 140 g~~~iaii~~~~~~--~g~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~ 216 (391)
T 3eaf_A 140 GQGKLALAYDSKVA--YSRSPI-GAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLG 216 (391)
T ss_dssp CSEEEEEEECTTCH--HHHTTH-HHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEEEecCCh--hHHHHH-HHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH
Confidence 35789988875222 222223 577888999998764322 2223355556666 6667888887654334555566
Q ss_pred HHhhcC
Q 014455 184 NGLLER 189 (424)
Q Consensus 184 ngL~~~ 189 (424)
..+.+.
T Consensus 217 ~~~~~~ 222 (391)
T 3eaf_A 217 RAMAKV 222 (391)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 666543
No 117
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=57.45 E-value=43 Score=31.08 Aligned_cols=88 Identities=11% Similarity=0.152 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.+|+.- ....-...++ +.++..+++.|+.+.+..+... ....++.+.+...+.|+||+.+.+.+ .+.+..
T Consensus 61 ~~~~~Ig~i~~~-~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 61 KRTTTVGVILPT-ITSTYFAAIT-RGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp -CCCEEEEEESC-TTCHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCCEEEEEeCC-CCCcHHHHHH-HHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 345677777743 2221122233 5677888889998877766543 22344566665678999999987654 345555
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
|... .+|+-.+-
T Consensus 138 l~~~-------~iPvV~~~ 149 (332)
T 2o20_A 138 LKNS-------RTPVVLVG 149 (332)
T ss_dssp HHHH-------CCCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 5432 57776663
No 118
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=57.11 E-value=20 Score=31.14 Aligned_cols=69 Identities=12% Similarity=0.209 Sum_probs=40.1
Q ss_pred cEEEEEEcCCC----CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc----cCCCce-EEEEcCCch
Q 014455 110 KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDG-IVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~s----G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~----~~~~d~-vV~vGGDGT 178 (424)
+++.+|||-.. ....+...=.+.++..|+..|++++++.--...+..+..+++. ...+|. |++.=|-|.
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~ 120 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGI 120 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBC
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCC
Confidence 55555555432 1222222233689999999999998877666666666666643 234553 334445553
No 119
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=56.97 E-value=36 Score=32.07 Aligned_cols=119 Identities=12% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHHHHHHHhhhhcCCC--cEEEEEEcCCC----CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc----
Q 014455 94 LWCEKLRDFIDSFGRP--KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---- 163 (424)
Q Consensus 94 ~w~~~~~~~~~~~~r~--~~~~vivNP~s----G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~---- 163 (424)
.|.+.-.+.+.-..++ +|+.+|||-.. ....+...=.+.+...|+..|++++++.=-...+..+..+++.
T Consensus 42 ~~~~~~~e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~d 121 (302)
T 3e4c_A 42 IWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPE 121 (302)
T ss_dssp HHHHHGGGBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGG
T ss_pred HHHhccccccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhhhc
Confidence 3444434445433333 45555555442 1122222223689999999999998887666666666666653
Q ss_pred cCCCceEEE-----------EcCCc--------hHHHHHHHhhcCcCcccccCCcEEEecCCChhhhh
Q 014455 164 LSKYDGIVC-----------VSGDG--------ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (424)
Q Consensus 164 ~~~~d~vV~-----------vGGDG--------Tl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~A 212 (424)
...+|.+|+ .|=|| -+.++++-+-...-..-..++-|-||-+=-||.+.
T Consensus 122 h~~~d~~vv~~lsHG~~~~i~g~D~~~~~~~~v~l~~I~~~F~~~~CpsL~gKPKlffIQACRG~~~~ 189 (302)
T 3e4c_A 122 HKTSDSTFLVFMSHGIREGICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQAARGDSPG 189 (302)
T ss_dssp GGGCSCEEEEEEEEEETTEEECTTCCSSSCCEECHHHHHHHTSTTTCGGGTTSCEEEEEEEECSSSCC
T ss_pred cCCCCEEEEEEeccCcCCeEEeecccccCCcEEEHHHHHHHHhhhcchhhcCCccEEEEECCCCCCCC
Confidence 234565442 34444 25566655543211111224556777665555553
No 120
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=56.88 E-value=12 Score=40.96 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.4
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
+..++++.+...+.|.+|++|||||+.- ++-|.+....-....+|+--||.==-||+.-+
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gT 735 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVPGT 735 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCCCC
Confidence 4556666666678999999999999854 44554321100113689999999888998643
No 121
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=56.68 E-value=28 Score=31.34 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=51.2
Q ss_pred CCcEEEEEEcCCCC--CcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEEEEcCCch-HHH
Q 014455 108 RPKRLYIFVNPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVE 181 (424)
Q Consensus 108 r~~~~~vivNP~sG--~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~e 181 (424)
+.+++.+++ |..+ ..-...++ +.++..+++.|+++.+..+. ......++.+.+...++|+||+.+.|.. +.+
T Consensus 4 ~~~~Ig~v~-~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~ 81 (289)
T 3brs_A 4 KQYYMICIP-KVLDDSSDFWSVLV-EGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD 81 (289)
T ss_dssp -CCEEEEEC-SCCCSSSHHHHHHH-HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH
T ss_pred CCcEEEEEe-CCCCCCchHHHHHH-HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH
Confidence 445666655 4333 22222223 56777888889888776552 2233345566666678999999988764 234
Q ss_pred HHHHhhcCcCcccccCCcEEEec
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP 204 (424)
.+..+.. .++|+-.+-
T Consensus 82 ~~~~~~~-------~~iPvV~~~ 97 (289)
T 3brs_A 82 AAKEIKD-------AGIKLIVID 97 (289)
T ss_dssp HHTTTGG-------GTCEEEEES
T ss_pred HHHHHHH-------CCCcEEEEC
Confidence 5544433 257776653
No 122
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=56.66 E-value=38 Score=30.64 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCCCC-cchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~-~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+.+.+.|++...... .--..++ +.++..+++.|+.+.+..+.... ...++.+.+...+.|+||+++.+.. .+.+.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 83 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMV-FGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-DPRVR 83 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHH-HHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHH
T ss_pred CCCCEEEEEecCCccccHHHHHHH-HHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHHH
Confidence 4566777777543321 1122233 57778888889888777665432 2334444454578999999987644 25566
Q ss_pred HhhcCcCcccccCCcEEEec
Q 014455 185 GLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP 204 (424)
.+... .+|+-.+-
T Consensus 84 ~l~~~-------~iPvV~i~ 96 (288)
T 3gv0_A 84 FMTER-------NMPFVTHG 96 (288)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHhhC-------CCCEEEEC
Confidence 66543 57766553
No 123
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=56.32 E-value=31 Score=28.84 Aligned_cols=57 Identities=7% Similarity=0.113 Sum_probs=37.7
Q ss_pred CCCcEEEEEEcCCC-------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc
Q 014455 107 GRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (424)
Q Consensus 107 ~r~~~~~vivNP~s-------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (424)
.+|+.+.+|+|-.. ..+.+...=.+.++..|+..|++++++.--...+..+..+++.
T Consensus 13 ~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 76 (146)
T 2dko_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVS 76 (146)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 45677888887531 1122222233689999999999998887766677666666553
No 124
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=56.20 E-value=58 Score=28.37 Aligned_cols=65 Identities=5% Similarity=0.056 Sum_probs=47.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+++.++-.|.--.+ . +.+..+| +++++.+.-..+.++.+..+++..+++++|| ||++..+.+..+
T Consensus 95 ~kIavvg~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 95 NELALIAYKHSIVD-----K-HEIEAML---GVKIKEFLFSSEDEITTLISKVKTENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp SEEEEEEESSCSSC-----H-HHHHHHH---TCEEEEEEECSGGGHHHHHHHHHHTTCCEEE---ECHHHHHHHHHT
T ss_pred CcEEEEeCcchhhH-----H-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCeEEE---CCHHHHHHHHHc
Confidence 47777765443221 2 3566666 4678888888899999999999888999876 588877777644
No 125
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=55.95 E-value=30 Score=31.97 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=51.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
+++.|++ |..+..-.... .+-++..+++.|+++.+.. ++ .+....+..+.+...+.|+||+++-|.+ +.+++..+
T Consensus 4 ~~Igvi~-~~~~~~~~~~~-~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIP-KLVGVGFFTSG-GNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEEC-SSSSSHHHHHH-HHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEe-CCCCChHHHHH-HHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 4555554 54443222222 3466777888898776542 32 2223334556665678999999998875 35666666
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... .+|+-.+-
T Consensus 82 ~~~-------gipvV~~d 92 (316)
T 1tjy_A 82 MQR-------GVKILTWD 92 (316)
T ss_dssp HHT-------TCEEEEES
T ss_pred HHC-------cCEEEEec
Confidence 543 57766653
No 126
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=54.58 E-value=44 Score=30.58 Aligned_cols=84 Identities=11% Similarity=0.088 Sum_probs=50.7
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC--ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~ 187 (424)
++.+| -|..+. -... +.+-++..+++.|+++.+..+. .+....+..+.+...++|+||+.+.|.. +.+.+..+.
T Consensus 3 ~Ig~i-~~~~~~-~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (313)
T 2h3h_A 3 TIGVI-GKSVHP-YWSQ-VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKAL 79 (313)
T ss_dssp EEEEE-CSCSSH-HHHH-HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHH
T ss_pred EEEEE-eCCCcH-HHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHH
Confidence 34444 455544 2233 3356778888889887766432 2233345566665678999999988764 345666664
Q ss_pred cCcCcccccCCcEEEec
Q 014455 188 EREDWNDAIKVPLGVVP 204 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP 204 (424)
.. .+|+-.+-
T Consensus 80 ~~-------~iPvV~~~ 89 (313)
T 2h3h_A 80 EM-------GIPVVTLD 89 (313)
T ss_dssp HT-------TCCEEEES
T ss_pred HC-------CCeEEEeC
Confidence 43 57776653
No 127
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=54.55 E-value=59 Score=29.57 Aligned_cols=88 Identities=11% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.||+...+..- -..++ +.++..+++.|+.+.+..+... ....++.+.+...+.|+||+++.+.+-.+.+..
T Consensus 13 ~~s~~Igvi~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAV-FADMF-SGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ----CEEEEESCTTSTT-HHHHH-HHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCcChH-HHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 34556777775433222 22233 5788889999999888777653 334456677766799999999988763225665
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
+.. .+|+-.+-
T Consensus 91 l~~--------~iPvV~i~ 101 (303)
T 3kke_A 91 VLE--------GVPAVTIN 101 (303)
T ss_dssp HHT--------TSCEEEES
T ss_pred HhC--------CCCEEEEC
Confidence 543 36665553
No 128
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=54.38 E-value=18 Score=31.97 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=37.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC-CchHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGILVE 181 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG-DGTl~e 181 (424)
.+.|+++|-|..+- ...+...|+++|.++.++..... ..++ .++|+||+-|| .|++.+
T Consensus 12 ~~~~i~~id~~~~~--------~~~~~~~l~~~G~~~~vv~~~~~------~~~l--~~~DglIl~GG~p~~~~~ 70 (212)
T 2a9v_A 12 HMLKIYVVDNGGQW--------THREWRVLRELGVDTKIVPNDID------SSEL--DGLDGLVLSGGAPNIDEE 70 (212)
T ss_dssp CCCBEEEEEESCCT--------TCHHHHHHHHTTCBCCEEETTSC------GGGG--TTCSEEEEEEECSCGGGT
T ss_pred ccceEEEEeCCCcc--------HHHHHHHHHHCCCEEEEEeCCCC------HHHH--hCCCEEEECCCCCCCCcc
Confidence 45578887775332 13466778888988777654321 1222 35999999999 788755
No 129
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=54.07 E-value=18 Score=29.43 Aligned_cols=85 Identities=12% Similarity=0.116 Sum_probs=48.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCC-CceEEEEc-----CC----chH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK-YDGIVCVS-----GD----GIL 179 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~-~d~vV~vG-----GD----GTl 179 (424)
++++||+=.. .|...++ .+.+...+...+++++++.-.... ..+... +|.||++. |+ +.+
T Consensus 1 mki~iiy~S~--~Gnt~~~-a~~i~~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~~~p~y~~g~~~~p~~~ 70 (147)
T 1f4p_A 1 PKALIVYGST--TGNTEYT-AETIARELADAGYEVDSRDAASVE-------AGGLFEGFDLVLLGCSTWGDDSIELQDDF 70 (147)
T ss_dssp CEEEEEEECS--SSHHHHH-HHHHHHHHHHHTCEEEEEEGGGCC-------STTTTTTCSEEEEEECEECSSSCEECTTT
T ss_pred CeEEEEEECC--cCHHHHH-HHHHHHHHHhcCCeeEEEehhhCC-------HHHhcCcCCEEEEEeCCCCCCCcCCChhH
Confidence 3677777443 4455544 468888888889888776533211 012346 88888752 33 345
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
...+.-|.... ....+++++-.|.+
T Consensus 71 ~~fl~~l~~~~----l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 71 IPLFDSLEETG----AQGRKVACFGCGDS 95 (147)
T ss_dssp HHHHHTGGGSC----CTTCEEEEEEEECT
T ss_pred HHHHHHHHhcc----cCCCEEEEEeecCC
Confidence 55555543211 12466777766544
No 130
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=53.74 E-value=16 Score=40.00 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=40.7
Q ss_pred HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
..++++.+...+.|.+|++|||||+.- ++.|.+....-....+|+--||.==-||+.-+
T Consensus 651 ~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gT 709 (941)
T 3opy_B 651 IGMIAYFFEKYGFDGLILVGGFEAFIS-LHQLERARINYPSLRIPLVLIPATISNNVPGT 709 (941)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHH-HHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeeccccCCCCCC
Confidence 445667777778999999999999865 33443311100113689999999989998743
No 131
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=53.54 E-value=28 Score=30.57 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=32.4
Q ss_pred cEEEEEE-cCCCCC---cchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 110 KRLYIFV-NPFGGK---KIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 110 ~~~~viv-NP~sG~---~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
.+++||. +|+-.. +...+ +.+.+...++++|.+++++......+..++.+++. ..|.||+
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~-l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~ 76 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDT-LTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIW 76 (204)
T ss_dssp CEEEEEECCC------CHHHHH-HHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHH-HHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEE
Confidence 3555554 888322 22232 34577777888888888877655444444444443 3555554
No 132
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=53.25 E-value=30 Score=31.33 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.|.+ .+.+..+... ++|+-.+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~~ 93 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQFLLKQ-------KFPFVAF 93 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cHHHHHHHhc-------CCCEEEE
Confidence 567788888998877655432 222345566666678999999987654 2555555443 5776665
No 133
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=52.34 E-value=23 Score=32.29 Aligned_cols=89 Identities=8% Similarity=0.124 Sum_probs=54.0
Q ss_pred CCCcEEEEEEc----CCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 107 GRPKRLYIFVN----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 107 ~r~~~~~vivN----P~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.+.+.+.||+. |.....--..++ +.++..+++.|+.+.+..+.... ...++.+.+...+.|+||+++.+.+ .+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVL-LGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHH-HHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CCCcEEEEEeecCCcccccChHHHHHH-HHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 45667777772 211111112233 57788888899888766655432 2334566666678999999987754 35
Q ss_pred HHHHhhcCcCcccccCCcEEEec
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP 204 (424)
.+..|... .+|+-.+-
T Consensus 83 ~~~~l~~~-------~iPvV~i~ 98 (295)
T 3hcw_A 83 IKQMLIDE-------SMPFIVIG 98 (295)
T ss_dssp HHHHHHHT-------TCCEEEES
T ss_pred HHHHHHhC-------CCCEEEEC
Confidence 55555443 57776663
No 134
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=52.34 E-value=19 Score=35.74 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 152 ~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
+..-.++++.+...+.|.+|++|||||+..+ +-|.+.- .+....+++--||.==-||+.-
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A-~~L~~~~-~~~g~~i~vIGiPkTIDNDl~~ 149 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTC-LKVSQLS-GTLGYPIQAIHVPKTVDNDLPI 149 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHH-HHHHHHH-HHTTCCCEEEEEECCTTCCCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHH-HHhCCCccEEEecccccCCCcC
Confidence 4455566677777789999999999998654 3343210 0011358888899888899864
No 135
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=51.64 E-value=56 Score=30.54 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=50.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE--EEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|..... .+.... +.++..|+++|+++. ........+....++++...+.|+|++++-|.....++..+
T Consensus 141 ~~~iaii~~~~~---~g~~~~-~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 216 (364)
T 3lop_A 141 VTRIGVLYQEDA---LGKEAI-TGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQY 216 (364)
T ss_dssp CCCEEEEEETTH---HHHHHH-HHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHH
T ss_pred CceEEEEEeCch---hhHHHH-HHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH
Confidence 467888875422 122223 567888999888653 22333333445556666557899999988887788888888
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 217 ~~~ 219 (364)
T 3lop_A 217 RAR 219 (364)
T ss_dssp HHT
T ss_pred HHc
Confidence 765
No 136
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=51.54 E-value=15 Score=39.45 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=38.4
Q ss_pred HHHHHHhccCCCceEEEEcCCchHHHHH----------HHhhcC-----cCcccccCCcEEEecCCChhhhhh
Q 014455 156 KEIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 156 ~~l~~~~~~~~~d~vV~vGGDGTl~evv----------ngL~~~-----~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.++++.+...+.|.+|++|||||+.-+. ..|.+. ........+++--||.==-||+.-
T Consensus 99 ~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~g 171 (762)
T 3o8l_A 99 LRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCG 171 (762)
T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSS
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCC
Confidence 4555666667899999999999987643 223221 111112368888899877899874
No 137
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=51.15 E-value=45 Score=28.72 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=38.0
Q ss_pred cCCCcEEEEEEcCCC-------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc
Q 014455 106 FGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (424)
Q Consensus 106 ~~r~~~~~vivNP~s-------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (424)
..+++.+.+|||-.. ..+.+...=.+.+...|+..|++++++.--...+..+..+++.
T Consensus 40 ~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s 104 (173)
T 2ql9_A 40 NFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKAS 104 (173)
T ss_dssp CSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 345677888887541 1122222233689999999999998887666666666666654
No 138
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=50.52 E-value=26 Score=32.68 Aligned_cols=111 Identities=13% Similarity=0.078 Sum_probs=64.2
Q ss_pred hcCCCcEEEEEEcCCCC-------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE-E-
Q 014455 105 SFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-C- 172 (424)
Q Consensus 105 ~~~r~~~~~vivNP~sG-------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV-~- 172 (424)
-..+++++.+|||-..= ...+...=.+.+...|+..|++++++.=-...+..+..+++.. ..+|.+| +
T Consensus 39 m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv~i 118 (277)
T 4ehd_A 39 MDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVL 118 (277)
T ss_dssp CCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEE
T ss_pred CCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 34567888888863221 1112212235799999999999988876666666666665542 3455433 2
Q ss_pred ---------EcCCch--HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 173 ---------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 173 ---------vGGDGT--l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.|=||. +.++++-+-...-..-..++-|-||-+=-||.+...+
T Consensus 119 lSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~ 172 (277)
T 4ehd_A 119 LSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGI 172 (277)
T ss_dssp ESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCC
T ss_pred EcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccCCc
Confidence 344443 4455554432211112235678888887788766543
No 139
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=50.50 E-value=18 Score=27.60 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (424)
|-.+++.+|++.|++|+.+..+....+.+.+.++.
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 34578899999999998877766666666665553
No 140
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=50.45 E-value=43 Score=29.69 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCeEEEEEcCChh---hHHHHHHHhccCC-CceEEEEcCCc-hHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQL---HAKEIVKVLDLSK-YDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~---~a~~l~~~~~~~~-~d~vV~vGGDG-Tl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++..+++.|+++.+..+.... ...+..+.+...+ +|+||+.+-|. ...+.+..+... .+|+-.+-.
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~-------~ipvV~~~~ 92 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRAR-------NIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHC-------CCcEEEEec
Confidence 57888888999988777643222 2334555655567 99999999764 456677777654 677777643
No 141
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=50.24 E-value=20 Score=30.82 Aligned_cols=94 Identities=18% Similarity=0.137 Sum_probs=51.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHH-----HH-----HHHhccCCCceEEEEcCC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK-----EI-----VKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~-----~l-----~~~~~~~~~d~vV~vGGD 176 (424)
+++||+.|++-|.. .... + ......|+.+++++++.-.+..+... .+ ..++....||.|++.||.
T Consensus 3 ~m~kkv~ill~~g~---~~~e-~-~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~ 77 (190)
T 4e08_A 3 HMSKSALVILAPGA---EEME-F-IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGL 77 (190)
T ss_dssp -CCCEEEEEECTTC---CHHH-H-HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCH
T ss_pred CCCcEEEEEECCCc---hHHH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCC
Confidence 35678888887533 1121 2 24567888999888877654311100 00 122223469999999995
Q ss_pred -chH--------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 177 -GIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 177 -GTl--------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
|.- .+.+..... ...+++-|=.|+. .+|+
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~-------~~k~i~aiC~G~~-~La~ 115 (190)
T 4e08_A 78 GGSNAMGESSLVGDLLRSQES-------GGGLIAAICAAPT-VLAK 115 (190)
T ss_dssp HHHHHHHHCHHHHHHHHHHHH-------TTCEEEEETTTHH-HHHH
T ss_pred hHHHHhhhCHHHHHHHHHHHH-------CCCEEEEECHHHH-HHHH
Confidence 432 122222222 2578888877764 4444
No 142
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.13 E-value=95 Score=28.72 Aligned_cols=88 Identities=10% Similarity=0.173 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.+|+.- ....-...++ +-++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+.+ .+.+..
T Consensus 56 ~~~~~Igvi~~~-~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 132 (340)
T 1qpz_A 56 NHTKSIGLLATS-SEAAYFAEII-EAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 132 (340)
T ss_dssp TCCSEEEEEESC-SCSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCEEEEEeCC-CCChHHHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHH
Confidence 455677777743 2222222233 5678888889998877666432 23334556665678999999988754 233444
Q ss_pred hhcCcCcccccCCcEEEe
Q 014455 186 LLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 186 L~~~~~~~~~~~~plgii 203 (424)
|... .++|+-.+
T Consensus 133 l~~~------~~iPvV~~ 144 (340)
T 1qpz_A 133 LEEY------RHIPMVVM 144 (340)
T ss_dssp HHTT------TTSCEEEE
T ss_pred HHhh------CCCCEEEE
Confidence 4321 25676655
No 143
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=50.04 E-value=16 Score=39.24 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=40.9
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.-.++++.+...+.|.+|++|||||+.-+. -|.+.........+|+--||.==-||+.-+
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vvgiPkTIDNDl~gT 536 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGL-ELMEGRKQFDELCIPFVVIPATVSNNVPGS 536 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHH-HHHHHHHHCSTTCSCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHHhccccCCCEEeeccccCCCCCCC
Confidence 445666777777899999999999987653 232110000013689999999889999753
No 144
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=49.99 E-value=32 Score=31.42 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhh-HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++..+++.|+.+.+..+..... ..++.+.+...+.|+||+++.+.+ .+.+..+... .+|+-.+-.
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHc-------CCCEEEECC
Confidence 567788888998887766654332 245566666678999999987754 3566666543 577766643
No 145
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=49.80 E-value=1.1e+02 Score=28.17 Aligned_cols=96 Identities=5% Similarity=-0.139 Sum_probs=54.9
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHH
Q 014455 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKV 161 (424)
Q Consensus 84 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~ 161 (424)
+...+...+....+.+.+ . ..+++.+|. +... .+.... +.++..|+++|+++... ......+....+++
T Consensus 119 ~~~~~~~~~~~~~~~l~~----~-g~~~ia~i~-~~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~ 189 (358)
T 3hut_A 119 AITTPAFEGPNNAAWMIG----D-GFTSVAVIG-VTTD--WGLSSA-QAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDE 189 (358)
T ss_dssp SSCCGGGHHHHHHHHHHH----T-TCCEEEEEE-ESSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHH
T ss_pred ecCChHHHHHHHHHHHHH----c-CCCEEEEEe-cCcH--HHHHHH-HHHHHHHHHcCCEEEEEEecCCCCccHHHHHHH
Confidence 344445555444444332 2 457888886 3222 222223 56788899999876432 22223334445555
Q ss_pred hccCCCceEEEEcCCc-hHHHHHHHhhcC
Q 014455 162 LDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (424)
Q Consensus 162 ~~~~~~d~vV~vGGDG-Tl~evvngL~~~ 189 (424)
+...+.|+|+++ +|+ ....++..+.+.
T Consensus 190 l~~~~~d~i~~~-~~~~~a~~~~~~~~~~ 217 (358)
T 3hut_A 190 IEDEAPQAIYLA-MAYEDAAPFLRALRAR 217 (358)
T ss_dssp HHHHCCSEEEEE-SCHHHHHHHHHHHHHT
T ss_pred HHhcCCCEEEEc-cCchHHHHHHHHHHHc
Confidence 544578887776 455 777888888765
No 146
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=49.68 E-value=72 Score=26.96 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=35.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEI 158 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l 158 (424)
+++..|.|+++|-|+.. ..-.+...|...|.++-++.....+....+
T Consensus 1 M~vi~v~s~kgG~GKTt--~a~~la~~la~~g~~vlliD~D~~~~~~~~ 47 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTT--AVINIATALSRSGYNIAVVDTDPQMSLTNW 47 (206)
T ss_dssp CEEEEECCSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred CeEEEEEeCCCCccHHH--HHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 46788999999999875 234678888888888888877666665544
No 147
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=49.38 E-value=88 Score=29.16 Aligned_cols=78 Identities=13% Similarity=0.027 Sum_probs=47.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE--EEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+|+.+|.. ... .+.... +.++..|+++|+++. ........+.....+++...+.|+|++++-+.....++..
T Consensus 158 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 GAKKVGYIGF-SDA--YGEGYY-KVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3578887753 222 222223 567888888998763 2222223344444555555688998887765666778888
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 234 ~~~~ 237 (386)
T 3sg0_A 234 LRER 237 (386)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7665
No 148
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=49.21 E-value=28 Score=30.01 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=37.4
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
+++||=|..| +...+...|++.|.++.++..... ..++.+.+.....+.+|+.||-|+..+
T Consensus 2 ~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~~--~~~i~~~l~~~~~~~iil~gGpg~~~~ 62 (192)
T 1i1q_B 2 DILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHIP--AQTLIDRLATMKNPVLMLSPGPGVPSE 62 (192)
T ss_dssp EEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTSC--SHHHHHHHTTCSSEEEEECCCSSCGGG
T ss_pred cEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCCC--HHHHHHHhhhccCCeEEECCCCcCchh
Confidence 5677776544 224567788888988877655422 233433333223556999999988653
No 149
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=49.18 E-value=15 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=23.8
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
.+.+.|...++++.+.|+++|++...+.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~~~ 103 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESGSG 103 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 4568999999999999999999887543
No 150
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=49.17 E-value=68 Score=28.92 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=48.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-cC-ChhhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL 186 (424)
+++.+++ |..+..-...+. +-++..+++.|+++.+.. +. .+....+..+.+...++|+||+.+.|.. +.+.+..+
T Consensus 5 ~~Ig~i~-~~~~~~~~~~~~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNIS-KVDGMPWFNRMG-EGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEEC-SCSSCHHHHHHH-HHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEe-ccCCChHHHHHH-HHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 4455444 544432222233 567778888887765443 32 2233344556665578999999988754 33455555
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... ++|+-.+
T Consensus 83 ~~~-------~ipvV~~ 92 (303)
T 3d02_A 83 RDA-------GIVVLTN 92 (303)
T ss_dssp HHT-------TCEEEEE
T ss_pred HHC-------CCeEEEE
Confidence 443 5676655
No 151
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=49.08 E-value=48 Score=27.91 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCeEEEEEc--------CChhh---HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 132 DVKPLLEDANIQFTVQET--------TQQLH---AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T--------~~~~~---a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
.....|...|+++..... +..-+ +.+++..+ ..+|.+|+++|||=+-.+++.|.++
T Consensus 65 ~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 65 QFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA--PDVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp HHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG--GGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh--ccCCEEEEEECChhHHHHHHHHHHH
Confidence 455677788887643221 11111 22333322 5799999999999999999999763
No 152
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=48.80 E-value=86 Score=26.48 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=44.0
Q ss_pred CCcEEEEEE--cCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhcc-CCCceEEEEcCCch----
Q 014455 108 RPKRLYIFV--NPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI---- 178 (424)
Q Consensus 108 r~~~~~viv--NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDGT---- 178 (424)
++.++.||. |.- |.-.. .-...+...|++.|+++.. +.........+..+++.. .++|.||+.||=|.
T Consensus 12 ~~~rv~Ii~tGdEl-g~i~D--sn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D 88 (169)
T 1y5e_A 12 KEVRCKIVTISDTR-TEETD--KSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRD 88 (169)
T ss_dssp CCCEEEEEEECSSC-CTTTC--HHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTC
T ss_pred cCCEEEEEEEcCcc-Ceecc--ChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence 445666665 444 32221 1224678889999987643 334444444444444432 27999999999763
Q ss_pred -HHHHHHHhh
Q 014455 179 -LVEVVNGLL 187 (424)
Q Consensus 179 -l~evvngL~ 187 (424)
..|++..++
T Consensus 89 ~t~ea~~~~~ 98 (169)
T 1y5e_A 89 VTIEAVSALL 98 (169)
T ss_dssp CHHHHHHTTC
T ss_pred CcHHHHHHHc
Confidence 345554443
No 153
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=48.79 E-value=51 Score=29.91 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=47.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
.+.+.+.||+...+...-...++ +.++..+++.|+.+.+..+... ....++.+.+...+.|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 45667888875544333221344 5788999999999888777543 33445666666678999999987753
No 154
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=48.55 E-value=41 Score=31.26 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=63.7
Q ss_pred cCCCcEEEEEEcCCC-------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE-E--
Q 014455 106 FGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-C-- 172 (424)
Q Consensus 106 ~~r~~~~~vivNP~s-------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV-~-- 172 (424)
..+|+++.+|||-.. ....+...=.+.++..|+..|++++++.=-...+..+..+++.. ..+|.+| +
T Consensus 17 ~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~il 96 (278)
T 3od5_A 17 DHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFL 96 (278)
T ss_dssp CSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEEEEE
T ss_pred CCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEEE
Confidence 356777777776532 11222222336899999999999988876666666665555532 3456433 2
Q ss_pred --------EcCCch--HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 173 --------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 173 --------vGGDGT--l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.|=||. +.++.+-+-...-..-..++-|-||-+=-||.+...+
T Consensus 97 SHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~ 149 (278)
T 3od5_A 97 SHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPV 149 (278)
T ss_dssp SCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCEE
T ss_pred CCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCCe
Confidence 344553 4455554433211111235668888887777776654
No 155
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=48.41 E-value=19 Score=31.52 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=33.1
Q ss_pred hhHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
..|+++++.+...++ .||..||. |..-.+..|.+... ...+|++|.+
T Consensus 20 ~~A~~lg~~La~~g~-~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~~ 67 (191)
T 1t35_A 20 RKAAELGVYMAEQGI-GLVYGGSRVGLMGTIADAIMENG------GTAIGVMPSG 67 (191)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCCCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHHCCC-EEEECCCcccHHHHHHHHHHHcC------CeEEEEeCch
Confidence 346677777765443 34555566 99999999988763 6789999986
No 156
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=48.33 E-value=16 Score=39.26 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=40.0
Q ss_pred HHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
..++++.+...+.|.+|++|||||+.- ++.|.+....-....+|+--||.==-||+.-
T Consensus 473 ~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~g 530 (766)
T 3o8o_B 473 LGMIAYYFQKYEFDGLIIVGGFEAFES-LHQLERARESYPAFRIPMVLIPATLSNNVPG 530 (766)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHTTTTTCGGGCSCCCEEEBCTTCCCSS
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeccccccCCCC
Confidence 345666666668999999999999865 4445432111011368888899988899864
No 157
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=48.27 E-value=16 Score=32.04 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.5
Q ss_pred hHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
.|+++.+.+...++ .||..||. |....+..|..... ...+||+|--
T Consensus 32 ~A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~~ 78 (189)
T 3sbx_A 32 LAGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEcCch
Confidence 35566666664443 45555567 99999999988763 6789999974
No 158
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=48.26 E-value=70 Score=27.44 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=46.3
Q ss_pred CCCcEEEEEEcCC-------C-CCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccC-CCceEEEEcC
Q 014455 107 GRPKRLYIFVNPF-------G-GKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSG 175 (424)
Q Consensus 107 ~r~~~~~vivNP~-------s-G~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~vV~vGG 175 (424)
.++.|+.||.--. . |+-... -...+...|++.|+++.. +.....+...+..+++..+ ++|.||+.||
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Ds--n~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDE--SGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCH--HHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeeh--HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4556676666321 2 332222 123688899999987653 3344444444444444322 4999999999
Q ss_pred Cc-----hHHHHHHHhhc
Q 014455 176 DG-----ILVEVVNGLLE 188 (424)
Q Consensus 176 DG-----Tl~evvngL~~ 188 (424)
=| ...|++..++.
T Consensus 91 ~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 91 TGYSPTDITVETIRKLFD 108 (178)
T ss_dssp CSSSTTCCHHHHHGGGCS
T ss_pred CCCCCCcchHHHHHHHhc
Confidence 55 35566655543
No 159
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=47.99 E-value=75 Score=29.39 Aligned_cols=77 Identities=6% Similarity=0.002 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+++.+|... . ..+.... +.++..|+++|+++.. .......+....++++...+.|+|++++-|.....++..+
T Consensus 138 ~~~iaii~~~-~--~~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 213 (356)
T 3ipc_A 138 DAKVAIIHDK-T--PYGQGLA-DETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQA 213 (356)
T ss_dssp TCCEEEEECS-S--HHHHHHH-HHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEeCC-C--hHHHHHH-HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHH
Confidence 4678888652 2 1222223 5678888999887522 2222233444555666556899999998888877888887
Q ss_pred hcC
Q 014455 187 LER 189 (424)
Q Consensus 187 ~~~ 189 (424)
.+.
T Consensus 214 ~~~ 216 (356)
T 3ipc_A 214 ADQ 216 (356)
T ss_dssp HHH
T ss_pred HHC
Confidence 654
No 160
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=47.72 E-value=73 Score=28.33 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+.++..+++.|+++.+..+... ....+..+.+...+.|+||+.+.|.. +.+.+..+... .+|+-++
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~i 88 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA-------NIPVITL 88 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEe
Confidence 5677888889988877655432 22234456665678999999887643 23455555443 5777666
No 161
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=47.70 E-value=21 Score=38.40 Aligned_cols=59 Identities=17% Similarity=0.291 Sum_probs=40.5
Q ss_pred hHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
+..++++.+...+.|.+|++|||||+.-+ +-|.+.........+|+--||.==-||+.-
T Consensus 471 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vIgiPkTIDNDl~g 529 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLDGLIILGGFEGFRSL-KQLRDGRTQHPIFNIPMCLIPATVSNNVPG 529 (787)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHH-HHHHHHTTTCGGGGSCEEEEEBCTTCCCTT
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCceeecccccccCCCC
Confidence 34456666666789999999999998754 344321110011368999999988999974
No 162
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=47.49 E-value=81 Score=29.26 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|.. ... .+.... +.++..|++.|+++.... .....+....++++...+.|+|++.+.|.....+++.
T Consensus 138 g~~~ia~i~~-~~~--~g~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 213 (368)
T 4eyg_A 138 GIKKVATLTS-DYA--PGNDAL-AFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQ 213 (368)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEec-Cch--HhHHHH-HHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHH
Confidence 3578888873 222 222222 567888899998764322 2222344455555555679999998888888889998
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 214 ~~~~ 217 (368)
T 4eyg_A 214 FAER 217 (368)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 163
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=47.34 E-value=17 Score=28.65 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.|.|...++++.+.|+++|+..+...
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999987654
No 164
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=47.21 E-value=20 Score=31.47 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-------h-----HHHHHHHhccCCCceEEEEcCC
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-------H-----AKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-------~-----a~~l~~~~~~~~~d~vV~vGGD 176 (424)
++++.|++-|..- ... + ......|+.+|+++++.-.+... + +..-..++....||.|++.||.
T Consensus 2 ~~kV~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~ 76 (205)
T 2ab0_A 2 SASALVCLAPGSE---ETE-A-VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76 (205)
T ss_dssp CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCH
T ss_pred CcEEEEEEcCCCc---HHH-H-HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCc
Confidence 5688888886431 121 2 23456788999988876544320 0 0001123333579999999997
Q ss_pred chHHH-----HHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 177 GILVE-----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 177 GTl~e-----vvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
+.... -+..++++- .....+++-|=.|.+--+|..
T Consensus 77 ~~~~~l~~~~~l~~~l~~~---~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 77 KGAECFRDSTLLVETVKQF---HRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp HHHHHHHHCHHHHHHHHHH---HHTTCEEEEETHHHHHHTTTT
T ss_pred ccHHHhccCHHHHHHHHHH---HHcCCEEEEECHhHHHHHHHC
Confidence 53221 111222110 012568888877764455543
No 165
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=47.08 E-value=63 Score=28.35 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=41.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+.|++.-.+ ..--..++ +.++..+++.|+.+.+..+.. .....++.+.+...+.|+||+.+.+.
T Consensus 2 s~~Igvi~~~~~-~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVTRLD-SLSENLAV-QTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEESCTT-CHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCC-CccHHHHH-HHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 456677764322 21112233 567788888999887776653 23334556666667899999998753
No 166
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=46.92 E-value=73 Score=27.46 Aligned_cols=65 Identities=9% Similarity=0.171 Sum_probs=43.0
Q ss_pred cEEEEEEcCCCC---Ccch-------hhchHHHHHHHHH--hcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 110 KRLYIFVNPFGG---KKIA-------SKIFLDDVKPLLE--DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG---~~~a-------~~~~~~~v~~~l~--~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++++||-=|.-+ ++.. ...+.+.++.... ..|++++.+.+.+.++..+...++..+++|.||+--
T Consensus 10 M~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINp 86 (176)
T 2c4w_A 10 MKILVIQGPNLNMLGHRDPRLYGMVTLDQIHEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINP 86 (176)
T ss_dssp EEEEEEECTTGGGBTTTBCGGGTSCCHHHHHHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEEC
T ss_pred cEEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECc
Confidence 467777767653 2211 1123345555556 678899999999999998888887644588887543
No 167
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=46.58 E-value=80 Score=26.61 Aligned_cols=63 Identities=5% Similarity=0.091 Sum_probs=43.4
Q ss_pred CcEEEEEEcCCCC---Ccchhhch--------HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 109 PKRLYIFVNPFGG---KKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 109 ~~~~~vivNP~sG---~~~a~~~~--------~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
+++++||-=|.-. ++. ..+| ++.++....+.|++++.+.+.+.++..+...++. +++|+||+-
T Consensus 7 m~~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiIN 80 (153)
T 3lwz_A 7 KFHILLLNGPNLNLLGTRE-PEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR-GNTDFILIN 80 (153)
T ss_dssp CEEEEEEECTTGGGTTTSS-HHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT-TTCSEEEEE
T ss_pred cCeEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCceEEEc
Confidence 4578888777642 222 1122 3455555666899999999999999888888764 568887754
No 168
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=46.55 E-value=27 Score=30.17 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=32.7
Q ss_pred hHHHHHHHhccCCCceEEEEcC-CchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGG-DGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
.|.++++.+...+ -.||..|| -|....+..+.++.. ...+||||..
T Consensus 33 ~A~~lg~~La~~g-~~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~~ 79 (176)
T 2iz6_A 33 MANELGKQIATHG-WILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHHTT-CEEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC-
T ss_pred HHHHHHHHHHHCC-CEEEECCCccCHhHHHHHHHHHcC------CEEEEEeCch
Confidence 3455666665433 36667777 899999999988763 5789999976
No 169
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=46.53 E-value=14 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.462 Sum_probs=22.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999988764
No 170
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=46.25 E-value=60 Score=29.84 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=55.4
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHH
Q 014455 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKV 161 (424)
Q Consensus 84 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~ 161 (424)
+...+...+....+.+.+.+ ..+++.+|..+.. .+.... +.++..|++.|+++... ......+....+++
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~----g~~~i~~i~~~~~---~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~ 188 (346)
T 1usg_A 117 TAGLDSSQGPTAAKYILETV----KPQRIAIIHDKQQ---YGEGLA-RSVQDGLKAANANVVFFDGITAGEKDFSALIAR 188 (346)
T ss_dssp CSCCGGGHHHHHHHHHHHTT----CCSSEEEEECSSH---HHHHHH-HHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHhc----CCCeEEEEECCCc---hHHHHH-HHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHH
Confidence 33444444444444332221 3467888875421 122222 46778888899876432 22222333455556
Q ss_pred hccCCCceEEEEcCCchHHHHHHHhhcC
Q 014455 162 LDLSKYDGIVCVSGDGILVEVVNGLLER 189 (424)
Q Consensus 162 ~~~~~~d~vV~vGGDGTl~evvngL~~~ 189 (424)
+...+.|+|++++-|.....++..+.+.
T Consensus 189 l~~~~~d~i~~~~~~~~a~~~~~~~~~~ 216 (346)
T 1usg_A 189 LKKENIDFVYYGGYYPEMGQMLRQARSV 216 (346)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred HHhcCCCEEEEcCcchHHHHHHHHHHHc
Confidence 5556789999887666666788877654
No 171
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=46.22 E-value=75 Score=28.35 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=36.5
Q ss_pred CCcEEEEEEcCCCC-CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 108 RPKRLYIFVNPFGG-KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 108 r~~~~~vivNP~sG-~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
..+++.|| |.+. ..... -+...+...|+..|+++. .+....+.. +.+ .+.|+|++-||+ ....+..|
T Consensus 30 ~~~~i~iI--~~a~~~~~~~-~~~~~~~~al~~lG~~~~--~v~~~~d~~---~~l--~~ad~I~lpGG~--~~~~~~~l 97 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTWD-EYTDKTAEVLAPLGVNVT--GIHRVADPL---AAI--EKAEIIIVGGGN--TFQLLKES 97 (229)
T ss_dssp TCCEEEEE--CTTCCSSCHH-HHHHHHHHHHGGGTCEEE--ETTSSSCHH---HHH--HHCSEEEECCSC--HHHHHHHH
T ss_pred CCCeEEEE--ECCCCCCCHH-HHHHHHHHHHHHCCCEEE--EEeccccHH---HHH--hcCCEEEECCCc--HHHHHHHH
Confidence 34566666 5553 22222 234578889999997544 443222222 222 246777777755 34444444
Q ss_pred hc
Q 014455 187 LE 188 (424)
Q Consensus 187 ~~ 188 (424)
.+
T Consensus 98 ~~ 99 (229)
T 1fy2_A 98 RE 99 (229)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 172
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=45.95 E-value=57 Score=28.43 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=27.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA 155 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a 155 (424)
||++|.+--.+| +.+. -.+...|.+.|+++.++.|+.+.+.
T Consensus 2 k~IllgvTGs~a---a~k~--~~l~~~L~~~g~~V~vv~T~~A~~~ 42 (189)
T 2ejb_A 2 QKIALCITGASG---VIYG--IKLLQVLEELDFSVDLVISRNAKVV 42 (189)
T ss_dssp CEEEEEECSSTT---HHHH--HHHHHHHHHTTCEEEEEECHHHHHH
T ss_pred CEEEEEEECHHH---HHHH--HHHHHHHHHCCCEEEEEEChhHHHH
Confidence 678887764444 3322 2455667777999999999875543
No 173
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=45.93 E-value=1.1e+02 Score=29.53 Aligned_cols=74 Identities=7% Similarity=-0.009 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC------CchHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG------DGILVE 181 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG------DGTl~e 181 (424)
+++++++++-- ..|...++. +.+...+.+.+++++++..... +..++..++. .+|.||++.- -+.+-.
T Consensus 255 ~~~kv~iiy~S--~~GnT~~la-~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 255 CQKKVTVVLDS--MYGTTHRMA-LALLDGARSTGCETVLLEMTSS-DITKVALHTY--DSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CCSEEEEEECC--SSSHHHHHH-HHHHHHHHHTTCEEEEEEGGGC-CHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHH
T ss_pred cCCeEEEEEEC--CCchHHHHH-HHHHHHHHhCCCeEEEEEcCcC-CHHHHHHHHH--hCCEEEEEcCccCcCchHHHHH
Confidence 46788888754 345566544 5788888888888877665432 2334444543 6898887742 234555
Q ss_pred HHHHhh
Q 014455 182 VVNGLL 187 (424)
Q Consensus 182 vvngL~ 187 (424)
.+..+.
T Consensus 329 fld~l~ 334 (414)
T 2q9u_A 329 ALNYVR 334 (414)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 174
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.85 E-value=43 Score=27.92 Aligned_cols=59 Identities=10% Similarity=0.094 Sum_probs=36.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++++||+=... |...++. +.+...|...|++++++..... +..++..++. ++|.||++.
T Consensus 1 Mkv~IvY~S~t--GnT~~~A-~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~~--~~d~ii~Gs 59 (161)
T 3hly_A 1 MSVLIGYLSDY--GYSDRLS-QAIGRGLVKTGVAVEMVDLRAV-DPQELIEAVS--SARGIVLGT 59 (161)
T ss_dssp -CEEEEECTTS--TTHHHHH-HHHHHHHHHTTCCEEEEETTTC-CHHHHHHHHH--HCSEEEEEC
T ss_pred CEEEEEEECCC--hHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH--hCCEEEEEc
Confidence 35777775444 4555444 6788888888998887765443 3344554443 578877653
No 175
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=45.61 E-value=1.4e+02 Score=27.82 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=40.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh--hhHHHHHHHhccCCCceEEEEcC
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
+.+.+.||+. .-...-...++ +.++..+++.|+.+.+..+... ....+..+.+...++|+||+++.
T Consensus 60 ~~~~Igvi~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 60 QSLLIGVATS-SLALHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp --CEEEEEES-CTTSHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCEEEEEeC-CCCcccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 4456766663 32221122233 5677888889998887776543 33344566666678999999864
No 176
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=45.50 E-value=35 Score=27.83 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=41.0
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc-CCch-----HHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDGT-----l~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.+...+...|++++..... ..-+..|.+.+...++|.||+.. |-|. +..+.+.++.+ .++|+-++|.
T Consensus 87 ~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~------~~~pVlvv~~ 159 (162)
T 1mjh_A 87 NIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKK------SNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHH------CCSCEEEECC
T ss_pred HHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHh------CCCCEEEEeC
Confidence 4445566678887655433 23455666666556788777652 3332 34466666654 2689999986
Q ss_pred C
Q 014455 206 G 206 (424)
Q Consensus 206 G 206 (424)
.
T Consensus 160 ~ 160 (162)
T 1mjh_A 160 K 160 (162)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=45.39 E-value=35 Score=31.42 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=48.5
Q ss_pred CCcEEEEEEc-CCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVN-PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivN-P~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+..++.+|+. +...+.--...+ +-++..+++.|+++.+..+... ....+..+.+...++|+||++|.. ..+.+..
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~--~~~~~~~ 80 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAY-EGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA--FAEYFST 80 (296)
T ss_dssp --CEEEEECCCC----CCTHHHH-HHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTH--HHHHHHT
T ss_pred CCcEEEEEECCCCCCCcHHHHHH-HHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh--HHHHHHH
Confidence 4567777774 232211122234 4677888888988776655432 344455666666789999998642 2333333
Q ss_pred hhcCcCcccccCCcEEEe
Q 014455 186 LLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 186 L~~~~~~~~~~~~plgii 203 (424)
+... ..++|+.++
T Consensus 81 ~~~~-----~p~~p~v~i 93 (296)
T 2hqb_A 81 IHNQ-----YPDVHFVSF 93 (296)
T ss_dssp TTTS-----CTTSEEEEE
T ss_pred HHHH-----CCCCEEEEE
Confidence 3321 125677776
No 178
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=45.12 E-value=53 Score=30.34 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=65.5
Q ss_pred hhhcCCCcEEEEEEcCCC--------------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---C
Q 014455 103 IDSFGRPKRLYIFVNPFG--------------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (424)
Q Consensus 103 ~~~~~r~~~~~vivNP~s--------------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~ 165 (424)
+.-..+|+.+.+|||-.. ..+.+...=.+.++..|+..|++++++.=-...+..+..+++.. .
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 333456777877777521 11122222236899999999999988876666666665555432 3
Q ss_pred CCceEEE-----------EcCCch---HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 166 KYDGIVC-----------VSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 166 ~~d~vV~-----------vGGDGT---l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.+|.+|+ .|=||. +.++.+-+-...-..-..++-|-+|-+=-||.+.+.+
T Consensus 90 ~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~gv 153 (271)
T 3h11_B 90 NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGI 153 (271)
T ss_dssp TCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC---
T ss_pred CCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccCCc
Confidence 5665432 456663 6666665543221112235678888887777776543
No 179
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=45.10 E-value=83 Score=25.89 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCe-EEEEEcCChhhHHHHHHHhccCCCceEEEEc-CCchHHHH-----HHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEV-----VNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~-~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDGTl~ev-----vngL~~~~~~~~~~~~plgii 203 (424)
+.+...+...+++ ++...... .-+.+|.+.+...++|.||+.. |-+.+.+. .+.++.+ ..+|+-++
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~------a~~PVlvV 156 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRR------AKVDVLIV 156 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHH------TTCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHh------CCCCEEEE
Confidence 3555666777887 76655433 3456676666556788777653 45556553 3444443 36899998
Q ss_pred cCC
Q 014455 204 PAG 206 (424)
Q Consensus 204 P~G 206 (424)
|..
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 854
No 180
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=44.96 E-value=75 Score=29.29 Aligned_cols=109 Identities=16% Similarity=0.052 Sum_probs=56.5
Q ss_pred cCCCcEEEEEEcCCCC-------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEEEE--
Q 014455 106 FGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIVCV-- 173 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG-------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV~v-- 173 (424)
..+|+++.+|||-..= ...+...=.+.++..|+..|++++++.=-...+..+..+++.. ..+|.+|++
T Consensus 17 ~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~~vv~il 96 (277)
T 1nw9_B 17 SMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDCCVVVIL 96 (277)
T ss_dssp CCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSEEEEEEE
T ss_pred CCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCeEEEEEe
Confidence 4567788888865531 1222222336899999999999888776666666665555432 345643321
Q ss_pred --cC--------------Cc---hHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 174 --SG--------------DG---ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 174 --GG--------------DG---Tl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
|. || .+.++++-+-...-..-..++-|-+|-+=-||.+.+.
T Consensus 97 SHG~~~~~~~~~g~iy~~D~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g 156 (277)
T 1nw9_B 97 SHGCQASHLQFPGAVYGTDGCPVSVEKIVNIFNGTSCPSLGGKPKLFFIQACGGEQKDHG 156 (277)
T ss_dssp EEEECCCCSSSCCEEECTTSCEEEHHHHHHTTCTTTCGGGTTSCEEEEEEEEC-------
T ss_pred CCCCccccccCCCcEEecCCceeeHHHHHHHhcccCChhHcCCCcEEEEeccCCCcccCC
Confidence 22 33 2455555443221111123566777777777776544
No 181
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=44.78 E-value=28 Score=33.89 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=42.6
Q ss_pred EEEEEEcCCCCCcc-hhhchHHHHHHHHHhcCCeEEEEEcCC----------hhhHHHHHHHhccCCCceEEE-EcCCch
Q 014455 111 RLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGDGI 178 (424)
Q Consensus 111 ~~~vivNP~sG~~~-a~~~~~~~v~~~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~vV~-vGGDGT 178 (424)
.-.-||.|.|+-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....++|+| .||+|+
T Consensus 44 D~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGyga 122 (371)
T 3tla_A 44 DTIGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGDNS 122 (371)
T ss_dssp CEEEEECSSCCHHHHTHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCSCG
T ss_pred CEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccccH
Confidence 34568899987532 23335 466778999998877654322 123455555555566777775 799996
No 182
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=44.63 E-value=10 Score=30.65 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
++|.|...++++.+.|+++|+..+...
T Consensus 100 ~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 100 HEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 568899999999999999999987654
No 183
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=43.71 E-value=26 Score=33.22 Aligned_cols=65 Identities=11% Similarity=0.217 Sum_probs=42.1
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc----------CChhhHHHHHHHhccCCCceEE-EEcCCchH
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----------TQQLHAKEIVKVLDLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T----------~~~~~a~~l~~~~~~~~~d~vV-~vGGDGTl 179 (424)
-.-||.|.|+-. ...+ +.....|+..|+++.+-.+ +....|.++.+.+.....++|+ +.||+|+.
T Consensus 19 ~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga~ 94 (311)
T 1zl0_A 19 RVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGCG 94 (311)
T ss_dssp EEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCGG
T ss_pred EEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCHH
Confidence 356889988764 2334 5778889999988775332 2223345565555556677776 56999963
No 184
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=43.59 E-value=45 Score=29.92 Aligned_cols=66 Identities=12% Similarity=0.300 Sum_probs=42.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCe-EEEEEcCChh-hHHHHHHHhccCCCceEEEEc
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQL-HAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~-~~v~~T~~~~-~a~~l~~~~~~~~~d~vV~vG 174 (424)
++.+.+.|++...+.. --..++ +.++..+++.|+. +.+..+.... ...++.+.+...++|+||+.+
T Consensus 8 ~~~~~Igvi~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNR-FYAQII-DGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSH-HHHHHH-HHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCCh-hHHHHH-HHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4566777777543322 222233 5788888899998 7766655432 233455666667899999998
No 185
>2zfz_A Arginine repressor; DNA binding protein, core, oligomeriza domain, alpha/beta topology, structural genomics; HET: ARG; 1.85A {Mycobacterium tuberculosis} PDB: 3bue_A 3cag_A*
Probab=43.56 E-value=26 Score=26.03 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=30.7
Q ss_pred HHHHHHhcCCeEE-----EEEcCChhhHHHHHHHhccCC-CceEEEEcCCchH
Q 014455 133 VKPLLEDANIQFT-----VQETTQQLHAKEIVKVLDLSK-YDGIVCVSGDGIL 179 (424)
Q Consensus 133 v~~~l~~ag~~~~-----v~~T~~~~~a~~l~~~~~~~~-~d~vV~vGGDGTl 179 (424)
+...++..-+.++ ++.-+.||.|.-++..++... .+.+=++.||-|+
T Consensus 6 l~~~~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTI 58 (79)
T 2zfz_A 6 MARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTI 58 (79)
T ss_dssp HHHHHHHHCCEEEEETTEEEEECSTTCHHHHHHHHHHHCCTTEEEEEECSSEE
T ss_pred HHHHHHHHEEEEeecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 4555555444432 345567899999998887544 4455588888874
No 186
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=43.22 E-value=21 Score=38.38 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHhccCCCceEEEEcCCchHHHHH----------HHhhcC-----cCcccccCCcEEEecCCChhhhhh
Q 014455 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 157 ~l~~~~~~~~~d~vV~vGGDGTl~evv----------ngL~~~-----~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
++++.+...+.|.+|++|||||+.-+- +.|.+. ........+++--||.==-||+.-
T Consensus 90 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 90 QAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp HHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 445556556899999999999987652 233321 111122368899999877898875
No 187
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=43.20 E-value=72 Score=29.42 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=58.9
Q ss_pred cCCCcEEEEEEcCCCC------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE-EE--
Q 014455 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-CV-- 173 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV-~v-- 173 (424)
..+++++.+|||-..= ...+...=.+.+...|+..|++++++.=-...+..+..+++.. ..+|.+| +.
T Consensus 28 ~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~~ls 107 (272)
T 1m72_A 28 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLT 107 (272)
T ss_dssp CSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEEEcC
Confidence 3456778777764311 1222222336899999999999988876666666666666542 3455432 22
Q ss_pred -cC-------Cch--HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 174 -SG-------DGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 174 -GG-------DGT--l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
|. ||. +.++++-+-...-..-..++-|-+|-+=-||.+.+
T Consensus 108 HG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~~~ 157 (272)
T 1m72_A 108 HGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 157 (272)
T ss_dssp CEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBC
T ss_pred CCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcccC
Confidence 22 332 33344333221111112355677777776776654
No 188
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=43.05 E-value=17 Score=28.50 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.|.|...|+++++.|+++|+..+...
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999887653
No 189
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=42.94 E-value=45 Score=31.07 Aligned_cols=67 Identities=18% Similarity=0.184 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
.+.+.+.||+...+. .--..++ +.++..+++.|+.+.+..+.......++.+.+...+.|+||+++.
T Consensus 62 ~~~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSN-EYYSESL-QTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSS-HHHHHHH-HHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcC-hHHHHHH-HHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 345667777644332 1122233 578888889999998888776444445666666678999999886
No 190
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.84 E-value=98 Score=27.65 Aligned_cols=84 Identities=10% Similarity=0.112 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~ 188 (424)
.+.|++ |...+.-...+. +.++..+++.|+.+.+..+... ....+..+.+...+.|+||+.+.|.. +.+.+..+..
T Consensus 3 ~Igvi~-~~~~~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (283)
T 2ioy_A 3 TIGLVI-STLNNPFFVTLK-NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANS 80 (283)
T ss_dssp EEEEEE-SCSSSHHHHHHH-HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEe-cCCCCHHHHHHH-HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHH
Confidence 455555 333322122233 4677788888988877665432 22234555555578999999887654 3455665544
Q ss_pred CcCcccccCCcEEEe
Q 014455 189 REDWNDAIKVPLGVV 203 (424)
Q Consensus 189 ~~~~~~~~~~plgii 203 (424)
. .+|+-.+
T Consensus 81 ~-------~iPvV~~ 88 (283)
T 2ioy_A 81 K-------NIPVITI 88 (283)
T ss_dssp T-------TCCEEEE
T ss_pred C-------CCeEEEe
Confidence 3 5776655
No 191
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=42.69 E-value=33 Score=36.71 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=38.3
Q ss_pred HHHHHhccCCCceEEEEcCCchHHHHH----------HHhhcCc-----CcccccCCcEEEecCCChhhhhhh
Q 014455 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLERE-----DWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 157 ~l~~~~~~~~~d~vV~vGGDGTl~evv----------ngL~~~~-----~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.+++.+...+.|.+|++|||||+.-+. +.|.+.. .......+++--||.==-||+.-+
T Consensus 89 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gT 161 (766)
T 3o8o_B 89 LGAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTT 161 (766)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCC
Confidence 345556556899999999999987542 3343320 001113688999998778998753
No 192
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=42.56 E-value=42 Score=26.53 Aligned_cols=69 Identities=13% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCeE-EEEEcCChhhHHHHHHHhccCCCceEEEEcCCchH---HHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 131 DDVKPLLEDANIQF-TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL---VEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 131 ~~v~~~l~~ag~~~-~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl---~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
+.+..+.+..++++ +.... ...-+..+.+.+...++|.||+..--|.+ ..+.+.++.+ .+.|+-++|.+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~------~~~pVlvv~~~ 139 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNT------IKIDMLVVPLR 139 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTT------CCSEEEEEECC
T ss_pred HHHHHHHHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhc------CCCCEEEeeCC
Confidence 34556666667764 22222 22334556666655678988876443333 3456666665 36899999864
No 193
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=42.07 E-value=40 Score=29.06 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-----h-----HHHHHHHh-ccCCCceEEEEcCCc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----H-----AKEIVKVL-DLSKYDGIVCVSGDG 177 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-----~-----a~~l~~~~-~~~~~d~vV~vGGDG 177 (424)
++++.|++-|.. .... + ......|+.+++++++.-.+... + +..-..++ +...||.|++.||.+
T Consensus 3 ~~~v~ill~~g~---~~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAKGA---EEME-T-VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECTTC---CHHH-H-HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECCCC---cHHH-H-HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 568888887632 1121 2 24566788999888776543210 0 00001222 335799999999975
Q ss_pred hHHH-----HHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 178 ILVE-----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 178 Tl~e-----vvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.... -+..++++- .....+++-|=.|+. .+|+.
T Consensus 78 ~~~~l~~~~~~~~~l~~~---~~~gk~i~aiC~G~~-~La~a 115 (197)
T 2rk3_A 78 GAQNLSESAAVKEILKEQ---ENRKGLIATICAGPT-ALLAH 115 (197)
T ss_dssp HHHHHHHCHHHHHHHHHH---HHTTCEEEEETTTHH-HHHHT
T ss_pred hHHHhhhCHHHHHHHHHH---HHcCCEEEEECHHHH-HHHHC
Confidence 3321 111122110 112568888888864 55554
No 194
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=41.63 E-value=67 Score=26.98 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=44.9
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+|-+-++|-. +++.++..|++.|+++.-+=| .+|.-+..+++.+...
T Consensus 4 IaigsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g--------------------- 57 (149)
T 2vvr_A 4 IAFGCDHVGFI-----LKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGG--------------------- 57 (149)
T ss_dssp EEEEECTTGGG-----GHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT---------------------
T ss_pred EEEEeCchhHH-----HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcC---------------------
Confidence 35677777642 346789999999987754422 3555555555554321
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhcc
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLD 217 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~ 217 (424)
....||+=||||++++-+.+.
T Consensus 58 ----------~~d~GIliCGTGiG~siaANK 78 (149)
T 2vvr_A 58 ----------EVDGGILICGTGVGISIAANK 78 (149)
T ss_dssp ----------SSSEEEEEESSSHHHHHHHHT
T ss_pred ----------CCceEEEEeCCcHHHHHHHhc
Confidence 346788888888888877653
No 195
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=41.60 E-value=1.5e+02 Score=24.93 Aligned_cols=45 Identities=7% Similarity=0.008 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
.+.++....+.|++++.+.+.+.++..+...++. +++|.||+--|
T Consensus 32 ~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~-~~~dgiIINpg 76 (154)
T 1uqr_A 32 EQHLQQSAQAQGYELDYFQANGEESLINRIHQAF-QNTDFIIINPG 76 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT-TTCCEEEEECT
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEECcc
Confidence 3455666667899999999999999888888774 45787775433
No 196
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=41.39 E-value=1.2e+02 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
.+...|+++|.++.++.... ... ++....+|+||+-||.
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~--~~~----~~~~~~~dglil~Gg~ 53 (189)
T 1wl8_A 15 RIWRTLRYLGVETKIIPNTT--PLE----EIKAMNPKGIIFSGGP 53 (189)
T ss_dssp HHHHHHHHTTCEEEEEETTC--CHH----HHHHTCCSEEEECCCS
T ss_pred HHHHHHHHCCCeEEEEECCC--ChH----HhcccCCCEEEECCCC
Confidence 56788888999887765433 222 2222469999999995
No 197
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=41.33 E-value=17 Score=39.79 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHhccCCCceEEEEcCCchHHHHHH----------HhhcCc-----CcccccCCcEEEecCCChhhhhh
Q 014455 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVN----------GLLERE-----DWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 156 ~~l~~~~~~~~~d~vV~vGGDGTl~evvn----------gL~~~~-----~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.++++.+...+.|.+|++|||||+.-+.- .|.++. .......+++--||.==-||+.-
T Consensus 294 ~~~~~~L~~~gId~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 294 LQACYNMVSNGIDALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 34556666678999999999999875432 111110 00011368888899888899884
No 198
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=41.25 E-value=54 Score=27.22 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=45.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL 186 (424)
++++||+=... |...++. +.+...+... +.++++...... .. +...+|.||++. |+|.+...+..+
T Consensus 1 ~kilIvY~S~t--GnT~~vA-~~ia~~l~~~-~~v~~~~~~~~~-----~~--~l~~~d~ii~g~pty~~g~~p~~~~~f 69 (169)
T 1czn_A 1 AKIGLFYGTQT--GVTQTIA-ESIQQEFGGE-SIVDLNDIANAD-----AS--DLNAYDYLIIGCPTWNVGELQSDWEGI 69 (169)
T ss_dssp CCEEEEECCSS--SHHHHHH-HHHHHHHTST-TTEEEEEGGGCC-----GG--GGGGCSEEEEECCEETTTEECHHHHHH
T ss_pred CeEEEEEECCC--cHHHHHH-HHHHHHhCcc-cceEEEEhhhCC-----Hh--HHhhCCEEEEEecccCCCcCCHHHHHH
Confidence 36777875444 4555443 5777777654 556665433211 11 234789888765 667666655444
Q ss_pred hcCcCcccccCCcEEEecCC
Q 014455 187 LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~G 206 (424)
+..-........+++++-.|
T Consensus 70 ~~~l~~~~l~gk~~~~f~t~ 89 (169)
T 1czn_A 70 YDDLDSVNFQGKKVAYFGAG 89 (169)
T ss_dssp GGGGGGSCCTTCEEEEEEEC
T ss_pred HHHhhhhccCCCEEEEEEEC
Confidence 43211011234566666554
No 199
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=41.21 E-value=84 Score=28.51 Aligned_cols=108 Identities=13% Similarity=0.088 Sum_probs=62.5
Q ss_pred CCCcEEEEEEcCCCC-------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE-EEcC
Q 014455 107 GRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-CVSG 175 (424)
Q Consensus 107 ~r~~~~~vivNP~sG-------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV-~vGG 175 (424)
..++++.+|||-..= ...+...=.+.+...|+..|++++++.=-...+..+..+++.. ..+|.+| +.=|
T Consensus 13 ~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~ls 92 (250)
T 2j32_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 92 (250)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECC
Confidence 456777777764211 1122222236899999999999988876666666666665542 2355432 3222
Q ss_pred ----------Cc--hHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 176 ----------DG--ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 176 ----------DG--Tl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
|| .+.++++-+-...-.....++-|-+|-+=-||.+...
T Consensus 93 HG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~g 143 (250)
T 2j32_A 93 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCG 143 (250)
T ss_dssp CEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBCC
T ss_pred CCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccCC
Confidence 33 3555555553321111223677888988888887553
No 200
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=41.19 E-value=55 Score=28.03 Aligned_cols=70 Identities=13% Similarity=0.080 Sum_probs=43.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
+| .+|-+-++|- .+++.|+..|++.|+++.-+= +.||.-+..+++.+...
T Consensus 22 Mk-IaIgsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g------------------ 77 (166)
T 3s5p_A 22 MK-VAFASDHGGR-----DLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSG------------------ 77 (166)
T ss_dssp CE-EEEEECGGGH-----HHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTT------------------
T ss_pred eE-EEEEECchHH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC------------------
Confidence 44 4455666653 244689999999998875442 23555555555554321
Q ss_pred HHhhcCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 184 ngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
....||+=||||++++-+.+
T Consensus 78 -------------~~d~GIliCGTGiG~sIaAN 97 (166)
T 3s5p_A 78 -------------RADCCILVCGTGIGISIAAN 97 (166)
T ss_dssp -------------SCSEEEEEESSSHHHHHHHH
T ss_pred -------------CCcEEEEEcCCcHHHHHHhh
Confidence 35678888888888887765
No 201
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=41.12 E-value=43 Score=30.11 Aligned_cols=89 Identities=10% Similarity=0.101 Sum_probs=52.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+.+.+.|++.......--..++ +.++..+++.|+.+.+..+.. .....++.+.+...+.|+||+.+-|.+-.++..
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~- 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFL-RGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYLN- 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHH-HHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHHH-
T ss_pred CCCceEEEEeccccchHHHHHHH-HHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCcccHHHHH-
Confidence 45677888886222222222333 577888888999887765532 222334555665678999999988765433332
Q ss_pred hhcCcCcccccCCcEEEec
Q 014455 186 LLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP 204 (424)
+.. .++|+-.+-
T Consensus 87 ~~~-------~~iPvV~~~ 98 (289)
T 3g85_A 87 KAS-------LTLPIILFN 98 (289)
T ss_dssp HCC-------CSSCEEEES
T ss_pred hcc-------CCCCEEEEC
Confidence 322 257776654
No 202
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.02 E-value=20 Score=27.69 Aligned_cols=26 Identities=12% Similarity=0.417 Sum_probs=22.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999988653
No 203
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=40.98 E-value=42 Score=30.00 Aligned_cols=68 Identities=10% Similarity=0.223 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
+.+++.|++.-.+. .--..++ +.++..+++.|+.+.+..+.......++.+.+...++|+|| ++.+..
T Consensus 4 ~~~~Igvi~~~~~~-~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSN-PWFIDLI-QSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTS-GGGHHHH-HHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCC-hHHHHHH-HHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 45667777643322 2222333 57888899999998888776333344566666667899999 888766
No 204
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=40.95 E-value=63 Score=30.60 Aligned_cols=113 Identities=12% Similarity=0.087 Sum_probs=59.5
Q ss_pred hhhcCC-CcEEEEEEcCCC-----CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---C-CCceEEE
Q 014455 103 IDSFGR-PKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S-KYDGIVC 172 (424)
Q Consensus 103 ~~~~~r-~~~~~vivNP~s-----G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~-~~d~vV~ 172 (424)
+.-..+ ++++.+|||-.. ....+...=.+.++..|+..|++++++.=-...+..+..+++.. . .+|.+|+
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 433345 778887877542 22223223346899999999998887765555565555555432 2 4553322
Q ss_pred ---------------EcCCch---HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 173 ---------------VSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 173 ---------------vGGDGT---l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.|=||. +.++++-+-...-..-..++-|-+|-+=-||.+.+..
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g~ 193 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDLGH 193 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC---------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccCCc
Confidence 122553 6666665543221112236779999998888876543
No 205
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=40.75 E-value=68 Score=27.51 Aligned_cols=62 Identities=5% Similarity=0.144 Sum_probs=42.3
Q ss_pred cEEEEEEcCCCC---Ccchhhch--------HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 110 KRLYIFVNPFGG---KKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 110 ~~~~vivNP~sG---~~~a~~~~--------~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
++++||-=|.-. ++. ..+| ++.++....+.|++++.+.+.+.++..+...++. +++|.||+-
T Consensus 29 M~IlVLNGPNLNlLG~RE-P~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~-~~~dgIIIN 101 (172)
T 3n8k_A 29 LIVNVINGPNLGRLGRRE-PAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVILN 101 (172)
T ss_dssp CEEEEEECTTGGGTTTSC-HHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred CEEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 578888877743 222 1222 3455556666899999999999999888877764 457776643
No 206
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=40.68 E-value=27 Score=31.25 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=30.4
Q ss_pred hHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEec
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP 204 (424)
.|+++.+.+...++ .||..||. |..-.+..|.+... ...+||+|
T Consensus 29 ~A~~lg~~LA~~g~-~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p 73 (216)
T 1ydh_A 29 AAIELGNELVKRKI-DLVYGGGSVGLMGLISRRVYEGG------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHhHHHHHHHHHcC------CcEEEEec
Confidence 34556666654443 45666676 88888888887653 57899998
No 207
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=40.50 E-value=18 Score=30.50 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchH----HH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGIL----VE 181 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl----~e 181 (424)
+++++|+|=-.. |.+.++ .+.|...|...+++++++...... ..+ ...+|.||++. |+|.+ .+
T Consensus 9 ~~ki~I~Y~S~t--GnT~~~-A~~ia~~l~~~g~~v~~~~~~~~~-----~~~--l~~~d~ii~g~pt~g~G~~p~~~~~ 78 (167)
T 1ykg_A 9 MPGITIISASQT--GNARRV-AEALRDDLLAAKLNVKLVNAGDYK-----FKQ--IASEKLLIVVTSTQGEGEPPEEAVA 78 (167)
T ss_dssp ---CEEEEECSS--SHHHHH-HHHHHHHHHHHTCCCEEEEGGGCC-----GGG--GGGCSEEEEEEECBGGGBCCGGGHH
T ss_pred CCeEEEEEECCc--hHHHHH-HHHHHHHHHHCCCceEEeehhhCC-----HHH--hccCCeEEEEEcccCCCcCChhHHH
Confidence 457888886555 455543 468888888888877766443211 012 24678777654 56654 44
Q ss_pred HHHHhhcCcCcccccCCcEEEecCC
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP~G 206 (424)
.++.|..... ......+++++-+|
T Consensus 79 f~~~l~~~~~-~~l~~k~~avfg~G 102 (167)
T 1ykg_A 79 LHKFLFSKKA-PKLENTAFAVFSLG 102 (167)
T ss_dssp HHHHHTSTTC-CCCTTCEEEEEEEC
T ss_pred HHHHHHhccc-cccCCCEEEEEeec
Confidence 5555532100 01124567766554
No 208
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=40.47 E-value=41 Score=29.27 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCc-----hHHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-----Tl~evvngL~~ 188 (424)
..+..+|++.|+++.. +.....+...+..+++...++|.||+.||=| -..|++..+.+
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t~eal~~l~~ 116 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILD 116 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccHHHHHHHHhc
Confidence 4788999999987643 3344555455544554335799999999976 35566655544
No 209
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=40.21 E-value=1.7e+02 Score=27.80 Aligned_cols=76 Identities=12% Similarity=0.176 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV 171 (424)
.+.+.+...+.+.. ...++++|++-.. .|...++. +.+...+...|++++++..... +..++..++ .++|.||
T Consensus 236 ~~~~~~~~~~~~~~-~~~~kv~i~y~S~--~Gnt~~lA-~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~--~~~d~ii 308 (402)
T 1e5d_A 236 CTFAVQKYVEYAEQ-KPTNKVVIFYDSM--WHSTEKMA-RVLAESFRDEGCTVKLMWCKAC-HHSQIMSEI--SDAGAVI 308 (402)
T ss_dssp HHHHHHHHHHHHHC-CCCSEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEETTTS-CHHHHHHHH--HTCSEEE
T ss_pred HHHHHHHHHHHhcC-CCCCcEEEEEECC--ChhHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH--HHCCEEE
Confidence 44444444343322 2346788887544 44444433 5677788888888877665432 344555544 3688888
Q ss_pred EEc
Q 014455 172 CVS 174 (424)
Q Consensus 172 ~vG 174 (424)
++.
T Consensus 309 ~gs 311 (402)
T 1e5d_A 309 VGS 311 (402)
T ss_dssp EEC
T ss_pred EEC
Confidence 775
No 210
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=39.88 E-value=1e+02 Score=28.55 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=22.7
Q ss_pred CCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 166 ~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
..|.+|+.|| +|+.|++. ..+|.-+||.
T Consensus 225 ~aDlvI~~gG-~T~~E~~~-----------~g~P~i~ip~ 252 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEALL-----------LKANFKAICY 252 (282)
T ss_dssp TEEEEEEESS-HHHHHHHH-----------TTCCEEEECC
T ss_pred HCCEEEECCc-HHHHHHHH-----------cCCCEEEEeC
Confidence 5689999999 99999874 3678888885
No 211
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=39.66 E-value=24 Score=27.69 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 578899999999999999999987653
No 212
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=39.46 E-value=94 Score=26.06 Aligned_cols=45 Identities=11% Similarity=0.018 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.++.++....+.|++++.+.+.+.++..+...++..+++|.||+-
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiIIN 73 (149)
T 2uyg_A 29 LEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVLN 73 (149)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEEc
Confidence 345666667778999999999999999888888754448887753
No 213
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=39.30 E-value=75 Score=26.72 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=39.6
Q ss_pred CcEEEEEEcCCCCC--cchhhch--------HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 109 PKRLYIFVNPFGGK--KIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 109 ~~~~~vivNP~sG~--~~a~~~~--------~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
+++++||-=|.-.- .+-..+| ++.++....+.|++++.+.+.+.++..+...++. +++|+||+-
T Consensus 4 m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~-~~~dgiiIN 77 (151)
T 3u80_A 4 MTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAA-DEKTPVVMN 77 (151)
T ss_dssp CEEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred CCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 34677777676432 1111222 3455555666899999999999999888777764 456776643
No 214
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=39.28 E-value=22 Score=26.81 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|...++++.+.|+++|+......
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 578899999999999999999886543
No 215
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=39.16 E-value=25 Score=29.26 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCC-------------CceEEEEcCCchHHH
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK-------------YDGIVCVSGDGILVE 181 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~-------------~d~vV~vGGDGTl~e 181 (424)
+.+..+|++++++++++.+.....+.+.++.+.... --.++++-||--+++
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld~ 68 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDGRLAMVVLPASDHITF 68 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEETTEEEEEEEETTCCCCH
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEECCeEEEEEECCCCeECH
Confidence 478899999999999988876666666665443211 114566777776653
No 216
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=39.14 E-value=40 Score=30.76 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=38.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
.|+++||-|..... . ..+.+.|++.|++++++.....+. +.. +..++|+||+-||-++..
T Consensus 3 ~~~vliiqh~~~e~------~-~~i~~~l~~~G~~v~v~~~~~~~~---~p~--~~~~~d~lIl~GGp~~~~ 62 (250)
T 3m3p_A 3 LKPVMIIQFSASEG------P-GHFGDFLAGEHIPFQVLRMDRSDP---LPA--EIRDCSGLAMMGGPMSAN 62 (250)
T ss_dssp CCCEEEEESSSSCC------C-HHHHHHHHHTTCCEEEEEGGGTCC---CCS--CGGGSSEEEECCCSSCTT
T ss_pred CCeEEEEECCCCCC------H-HHHHHHHHHCCCeEEEEeccCCCc---CcC--ccccCCEEEECCCCCccc
Confidence 46788888754321 1 356778999999988776432110 001 235799999999987643
No 217
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=39.04 E-value=1.2e+02 Score=25.81 Aligned_cols=67 Identities=6% Similarity=-0.026 Sum_probs=42.8
Q ss_pred CCcEEEEEEcCCCC---Ccc-------hhhchHHHHHHHH--HhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 108 RPKRLYIFVNPFGG---KKI-------ASKIFLDDVKPLL--EDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 108 r~~~~~vivNP~sG---~~~-------a~~~~~~~v~~~l--~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
-+++++||-=|.-. ++. .....++.++... .+.|++++.+.+.+.++..+...++..+++|+||+--
T Consensus 13 ~~~~IlVlNGPNLNlLG~REP~iYG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIIINp 91 (167)
T 3kip_A 13 LVKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVINA 91 (167)
T ss_dssp CCCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEEcc
Confidence 35678888777642 221 1111233444444 4567999999999999988888876435678777543
No 218
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=38.96 E-value=48 Score=28.61 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=35.2
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
++||=|..|- ...+...|+++|.++.++.... ....++ ...++|+||+.||-|+..
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~-~~~~~~----~~~~~dglil~gG~~~~~ 59 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDE-ISIKGI----ERIDPDRLIISPGPGTPE 59 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTT-SCHHHH----HHHCCSEEEECCCSSCTT
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCC-CCHHHH----hhCCCCEEEECCCCCChh
Confidence 7777765442 1356778888999888776542 122222 212689999988866543
No 219
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=38.85 E-value=26 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|...++++.+.|+++|+..+...
T Consensus 87 r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 87 RTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999987643
No 220
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=38.63 E-value=44 Score=28.37 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCc-----hHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-----Tl~evvngL~~~ 189 (424)
..+..+|++.|+++.. +.... +...+..+++...++|.||+.||=| -..|++..++.+
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~~~~ 94 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVDY 94 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCSE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHHhcc
Confidence 3678899999987642 23333 4444444444324799999999966 356666666543
No 221
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=38.54 E-value=32 Score=35.44 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=59.0
Q ss_pred CcEEEEEEcCCCCCcc--hhhchHHHHHHHHHhcCCe-E---EEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 109 PKRLYIFVNPFGGKKI--ASKIFLDDVKPLLEDANIQ-F---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~--a~~~~~~~v~~~l~~ag~~-~---~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
-.+++-|.|-..|=-+ -...-.+.+..++..-|.. . .... .....-.++++.+...+.|.+|++|||||+..+
T Consensus 104 ~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~-~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A 182 (555)
T 2f48_A 104 NSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKI-ETEEHYNKALFVAKENNLNAIIIIGGDDSNTNA 182 (555)
T ss_dssp TCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCC-CSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHH
T ss_pred CCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHH
Confidence 3578888776655322 1222124567666655521 0 0000 123344566666766789999999999997654
Q ss_pred HHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
. -|.+.- ......+++--||.==-||+.-
T Consensus 183 ~-~L~e~~-~~~~~~i~vIGiPkTIDNDl~~ 211 (555)
T 2f48_A 183 A-ILAEYF-KKNGENIQVIGVPKTIDADLRN 211 (555)
T ss_dssp H-HHHHHH-HHTTCCCEEEEEEEETTCCCCC
T ss_pred H-HHHHHH-HHhCCCCcEEEeccccCCCCCC
Confidence 3 232210 0012368999999888899964
No 222
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=38.35 E-value=20 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|..+++++.+.|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999988764
No 223
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=38.29 E-value=79 Score=29.33 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=25.2
Q ss_pred CCcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 108 RPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 108 r~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
+++|++||+ +|...+-.. .+ .+.+...|+++|.+++++.
T Consensus 21 ~~MKiLII~aHP~~~S~n~-aL-~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNG-AL-KNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTSHHH-HH-HHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCccHHH-HH-HHHHHHHHHHCCCeEEEEE
Confidence 456777666 776543322 23 3577778899999888764
No 224
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.10 E-value=26 Score=27.24 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++...|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999987654
No 225
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=38.07 E-value=21 Score=27.63 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 56889999999999999999888643
No 226
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=38.07 E-value=66 Score=28.82 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=42.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
+.+++.|++ |. ...-... +.+.++..+++.|+++.+..+... ....++.+.+...++|+||+.+.|.+
T Consensus 7 ~~~~Igvi~-~~-~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 7 RSNIIAFIV-PD-QNPFFTE-VLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp CEEEEEEEE-SS-CCHHHHH-HHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCEEEEEE-CC-CCchHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 445666666 43 2211222 235677788888998877666432 23345566666678999999988764
No 227
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=37.89 E-value=43 Score=28.30 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccC-CCceEEEEcCCc-----hHHHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDG-----ILVEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~vV~vGGDG-----Tl~evvngL~~ 188 (424)
..+...|++.|+++.. +.........+..+++... ++|.||+.||=| ...|++..+..
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~~ 89 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRELLD 89 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHHhC
Confidence 3678889999987643 3344444444544544332 799999999966 24556655543
No 228
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.82 E-value=35 Score=32.01 Aligned_cols=63 Identities=13% Similarity=0.305 Sum_probs=38.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCChhhH--HHHHHHhccCCCceEEEEcCCch
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~~~~a--~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
.+++|| |.+... .. .+.+.....|+..|+ ++++.......++ .++.+.+. +.|+|++.|||=+
T Consensus 57 ~~I~~I--ptAs~~-~~-~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~ 122 (291)
T 3en0_A 57 AIIGII--PSASRE-PL-LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQL 122 (291)
T ss_dssp CEEEEE--CTTCSS-HH-HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHH
T ss_pred CeEEEE--eCCCCC-hH-HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHH
Confidence 455554 555432 22 244577889999999 6776665443322 23444443 5899999999974
No 229
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=37.80 E-value=86 Score=27.39 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCeEEEEEcCChh------h------H-----HHHHH-----HhccCCCceEEEEcCCchHH-----HHHH
Q 014455 132 DVKPLLEDANIQFTVQETTQQL------H------A-----KEIVK-----VLDLSKYDGIVCVSGDGILV-----EVVN 184 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~------~------a-----~~l~~-----~~~~~~~d~vV~vGGDGTl~-----evvn 184 (424)
.....|+.+|+++++.-.+... . . ..+.. ++....||+|++.||.|... +-+.
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 4556788899988876543210 0 1 12211 12224799999999988642 1111
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.++++- .....+|+-|=.|+. .+|+.
T Consensus 113 ~~l~~~---~~~~k~iaaiC~G~~-~La~a 138 (224)
T 1u9c_A 113 YVLQQF---AEDGRIIAAVCHGPS-GLVNA 138 (224)
T ss_dssp HHHHHH---HHTTCEEEEETTGGG-GGTTC
T ss_pred HHHHHH---HHCCCEEEEEChHHH-HHHHc
Confidence 222110 012567888877764 44443
No 230
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=37.71 E-value=1.6e+02 Score=27.52 Aligned_cols=77 Identities=8% Similarity=-0.006 Sum_probs=46.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcC--ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~--~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+++.+|..+.. .+.... +.++..|+++|+++.. .... ...+...+++++...+.|+|++.+-|...-.++.
T Consensus 140 ~~~ia~i~~~~~---~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~ 215 (385)
T 1pea_A 140 GERVVFIGSDYI---YPRESN-HVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYR 215 (385)
T ss_dssp CSEEEEEEESSH---HHHHHH-HHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHH
T ss_pred CcEEEEEeCCCh---HHHHHH-HHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHH
Confidence 378888875321 122222 4677888889987643 2222 3344555666654457899888765556667777
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.+.+.
T Consensus 216 ~~~~~ 220 (385)
T 1pea_A 216 AIARR 220 (385)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77543
No 231
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=37.47 E-value=74 Score=28.43 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---------CChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
+|+ .|.+-++..-+ ..+..+.++..|+..|+++.=+=| .+|.-+..+++.+...
T Consensus 4 MkI-aIgsDha~~lK-n~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g--------------- 66 (216)
T 2ppw_A 4 MKI-ALINENSQASK-NHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTK--------------- 66 (216)
T ss_dssp CEE-EECCCTTTGGG-HHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTT---------------
T ss_pred cEE-EEEcCChHhhh-hhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcC---------------
Confidence 454 56677772211 123446899999999988754422 2455555555544321
Q ss_pred HHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 181 evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
....||+=||||++++-+.+.--|+ -.++..|-++-.
T Consensus 67 ----------------~~d~GIliCGTGiG~sIAANKv~GIRAAlc~d~~sA~laR~ 107 (216)
T 2ppw_A 67 ----------------AVDFVVTGCGTGVGAMLALNSFPGVVCGLAVDPTDAYLYSQ 107 (216)
T ss_dssp ----------------SCSEEEEEESSSHHHHHHHTTSTTCCEEECSSHHHHHHHHH
T ss_pred ----------------CCCeEEEEcCCcHHHHHHhhcCCCeEEEEeCCHHHHHHHHH
Confidence 3567888888888888776532232 225555554433
No 232
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=37.41 E-value=38 Score=32.34 Aligned_cols=67 Identities=9% Similarity=0.096 Sum_probs=42.3
Q ss_pred EEEEEEcCCCCCcc-hhhchHHHHHHHHHhcCCeEEEEEcCC----------hhhHHHHHHHhccCCCceEEE-EcCCch
Q 014455 111 RLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGDGI 178 (424)
Q Consensus 111 ~~~vivNP~sG~~~-a~~~~~~~v~~~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~vV~-vGGDGT 178 (424)
.-.-||.|.|+-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....++|+| .||+|+
T Consensus 13 D~I~ivaPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 91 (331)
T 4e5s_A 13 DEIRVISPSCSLSIVSTENR-RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGYNS 91 (331)
T ss_dssp CEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred CEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccccH
Confidence 34558899887541 12235 466778999998877644322 223455555555567787764 799996
No 233
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=37.35 E-value=75 Score=30.01 Aligned_cols=108 Identities=13% Similarity=0.052 Sum_probs=61.0
Q ss_pred cCCCcEEEEEEcCCC------CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEE-E---
Q 014455 106 FGRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-C--- 172 (424)
Q Consensus 106 ~~r~~~~~vivNP~s------G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV-~--- 172 (424)
..+++++.+|||-.. ....+...=.+.+...|+..|++++++.=-...+..+..+++.. ..+|.+| +
T Consensus 56 ~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ilS 135 (310)
T 2nn3_C 56 NHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVAVLT 135 (310)
T ss_dssp CSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEEEEE
T ss_pred CCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEEEeC
Confidence 345677777776431 11222222336899999999999988876666666666666542 2355422 2
Q ss_pred -------EcCCch--HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 173 -------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 173 -------vGGDGT--l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
.|=||. +.++++-+-...-.....++-|-||-+=-||.+.+
T Consensus 136 HG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 185 (310)
T 2nn3_C 136 AGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 185 (310)
T ss_dssp EEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCC
T ss_pred CCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCcccc
Confidence 233442 44555544322111112356688888877777654
No 234
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=37.32 E-value=25 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.5
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
.+.+.|...++++...|+++|+..+..
T Consensus 87 ~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 87 QDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 467889999999999999999998754
No 235
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=37.29 E-value=31 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 57889999999999999999998754
No 236
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=37.11 E-value=78 Score=27.13 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=50.8
Q ss_pred CcEEEEEE-cCCCCCcchhhchHHHHHHH-HHhcCCeEEEEEcCCh------------hhHHHHHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPL-LEDANIQFTVQETTQQ------------LHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~viv-NP~sG~~~a~~~~~~~v~~~-l~~ag~~~~v~~T~~~------------~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++++++|+ .|+. .+...++. +.+... +.+.|.+++++..... .+..++.+++. .+|+||++.
T Consensus 2 Mmkilii~gS~r~-~g~t~~la-~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~~s 77 (197)
T 2vzf_A 2 TYSIVAISGSPSR-NSTTAKLA-EYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIVAT 77 (197)
T ss_dssp CEEEEEEECCSST-TCHHHHHH-HHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEEEE
T ss_pred CceEEEEECCCCC-CChHHHHH-HHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEEEe
Confidence 45676665 3332 23444433 577777 8878888877664321 24455555553 588888764
Q ss_pred C--CchHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 175 G--DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 175 G--DGTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
- .|.+...+..++.+-........|++++-.|
T Consensus 78 P~y~~~~p~~lK~~ld~l~~~~~~gK~~~~~~tg 111 (197)
T 2vzf_A 78 PIYKASYTGLLKAFLDILPQFALAGKAALPLATG 111 (197)
T ss_dssp ECBTTBCCHHHHHHHTTSCTTTTTTCEEEEEEEE
T ss_pred CccCCCCCHHHHHHHHhccccccCCCEEEEEEEC
Confidence 2 2445555555555421111234566666554
No 237
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=36.99 E-value=30 Score=27.21 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|...++++...|+++|+..+...
T Consensus 88 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 88 RTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999988653
No 238
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=36.80 E-value=56 Score=29.95 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=56.9
Q ss_pred cCCCcEEEEEEcCCCC------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCceEEE-E--
Q 014455 106 FGRPKRLYIFVNPFGG------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIVC-V-- 173 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~vV~-v-- 173 (424)
..+++++.+|||-..= ...+...=.+.+...|+..|++++++.=-...+..+..+++.. ..+|.+|+ .
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~v~~~ls 95 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDCILVAILS 95 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEEEEEEEEE
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEEec
Confidence 3456777777754321 1112112235899999999999988876666666666665542 34554332 2
Q ss_pred --------cCCch--HHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 174 --------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 174 --------GGDGT--l~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
|=||. +.++++-+-...-..-..++-|-||-+=-||.+...
T Consensus 96 HG~~g~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlf~iQACRG~~~~~g 146 (259)
T 3sir_A 96 HGEMGYIYAKDTQYKLDNIWSFFTANHCPSLAGKPKLFFIQACQGDRLDGG 146 (259)
T ss_dssp CTTCCCCCCTTHHHHHHHTTGGGSTTTCGGGSSSCEEEEEEEETTSCEEC-
T ss_pred CCCCCeEEeCCCcEEHHHHHHHhhhccCccccCCCCEEEEecCCCCcccCC
Confidence 33443 223332222111111123566888877666666543
No 239
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=36.65 E-value=43 Score=28.58 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=49.7
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc-------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T-------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
+|-+-++|- .+++.|+..|++.|+++.-+=| .|+.-+..+++.+...
T Consensus 7 aigsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g--------------------- 60 (162)
T 2vvp_A 7 YLGADHAGY-----ELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVAD--------------------- 60 (162)
T ss_dssp EEEECHHHH-----HHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHS---------------------
T ss_pred EEEeCchhH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcC---------------------
Confidence 455666653 2446799999999987754422 3445455555544321
Q ss_pred hcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
...+||+=||||++++-+.+.--|+ -.++..|-++-.
T Consensus 61 ----------~~d~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~ 101 (162)
T 2vvp_A 61 ----------PGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALARE 101 (162)
T ss_dssp ----------TTCEEEEEESSSHHHHHHHHTSTTCCEEECCSHHHHHHHHH
T ss_pred ----------CCceEEEEeCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 3457888888888888776532232 225555544433
No 240
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=36.60 E-value=42 Score=30.34 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc---------CChhhHHHHHHHhccCCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---------TQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T---------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
.+++. ++|..|-.++-. ...+.++..|+..|+++.=+=| .+|.-+..+++.+...
T Consensus 19 ~mkia-li~~~sqa~kN~-~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g-------------- 82 (231)
T 3c5y_A 19 GMKIA-LIIENSQAAKNA-VVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSG-------------- 82 (231)
T ss_dssp CCEEE-ECCCGGGGGGHH-HHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHT--------------
T ss_pred cceEE-EEecCCHhhhHH-HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcC--------------
Confidence 35555 445444333322 3447899999999988754422 2444455555544321
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
....||+=||||++++-+.+.--|+ -.++..|-++-.
T Consensus 83 -----------------~~d~GIliCGTGiG~sIAANKv~GIRAAlc~d~~sA~laR~ 123 (231)
T 3c5y_A 83 -----------------AADFVVTGCGTGMGSMLAANAMPGVFCGLVIDPTDAFLFGQ 123 (231)
T ss_dssp -----------------SCSEEEEEESSSHHHHHHHHTSTTCCEEECCSHHHHHHHHH
T ss_pred -----------------CCCeEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 3457888888888887776532232 225555544433
No 241
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=36.56 E-value=1.1e+02 Score=27.42 Aligned_cols=66 Identities=12% Similarity=0.165 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCeEEEEE--cCCh-hhHHHHHHHhccCCCceEEEEcCCch-HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 131 DDVKPLLEDANIQFTVQE--TTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~--T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT-l~evvngL~~~~~~~~~~~~plgii 203 (424)
+-++..+++.|+.+.+.. +... ....++.+.+...+.|+||+++.|.. +.+.+..+... .+|+-.+
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~ 90 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK-------GIYLVNL 90 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHT-------TCEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEE
Confidence 466778888898887766 4332 22234455555568999999887754 34556666543 5777666
No 242
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=36.51 E-value=1.5e+02 Score=27.94 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=57.1
Q ss_pred EEEcCCC-CCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCc-------------hH
Q 014455 114 IFVNPFG-GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-------------IL 179 (424)
Q Consensus 114 vivNP~s-G~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG-------------Tl 179 (424)
+.+||.. .-+++.. . +.....|...+.+.-++.+...+.+.++++.. .+=|+-|||| |+
T Consensus 66 i~l~~~~ss~~kgEs-l-~DTarvLs~~~~D~iviR~~~~~~~~~la~~~-----~vPVINagdg~~~HPtQaLaDl~Ti 138 (304)
T 3r7f_A 66 LNLDGTSTSVQKGET-L-YDTIRTLESIGVDVCVIRHSEDEYYEELVSQV-----NIPILNAGDGCGQHPTQSLLDLMTI 138 (304)
T ss_dssp EEEETTSTTSCSSSC-H-HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHC-----SSCEEESCCTTSCCHHHHHHHHHHH
T ss_pred EEECcccccCCCCCC-H-HHHHHHHHHhcCCEEEEecCChhHHHHHHHhC-----CCCEEeCCCCCCcCcHHHHHHHHHH
Confidence 3448853 3344443 3 35667888887788888888888888887653 2448888888 34
Q ss_pred HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhhh
Q 014455 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 180 ~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.|-... ...+.++++--|.-|..|+|+
T Consensus 139 ~e~~g~---------l~glkva~vGD~~~~rva~Sl 165 (304)
T 3r7f_A 139 YEEFNT---------FKGLTVSIHGDIKHSRVARSN 165 (304)
T ss_dssp HHHHSC---------CTTCEEEEESCCTTCHHHHHH
T ss_pred HHHhCC---------CCCCEEEEEcCCCCcchHHHH
Confidence 443221 236789999877767788886
No 243
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.49 E-value=28 Score=27.31 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=22.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|...++++.+.|+++|+..+.
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQICTQ 104 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999998765
No 244
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=36.40 E-value=1.5e+02 Score=28.11 Aligned_cols=103 Identities=13% Similarity=0.062 Sum_probs=59.9
Q ss_pred EeCCCCHHHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--CChhhHHH
Q 014455 83 VFEPLSEDSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKE 157 (424)
Q Consensus 83 ~~~~~~~~~~~~w~~~~~~~~~~~---~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--~~~~~a~~ 157 (424)
.+...+...+....+.+....... ...+++.+|+.. .. -+.. ..+.++..+++.|+++....+ ....+...
T Consensus 135 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~-~~--~g~~-~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~ 210 (419)
T 3h5l_A 135 QYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGP-GI--YSVN-IANAIRDGAGEYGYDVSLFETVAIPVSDWGP 210 (419)
T ss_dssp ESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECS-SH--HHHH-HHHHHHHHGGGGTCEEEEEEECCSSCSCCHH
T ss_pred EeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcC-cc--hhHH-HHHHHHHHHHHcCCeEEEEecCCCCCccHHH
Confidence 334445555555555554433221 145788888742 21 1222 335788889999988754332 22234556
Q ss_pred HHHHhccCCCceEEEEcCCc-hHHHHHHHhhcC
Q 014455 158 IVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (424)
Q Consensus 158 l~~~~~~~~~d~vV~vGGDG-Tl~evvngL~~~ 189 (424)
++.++...+.|+|++++-.+ ....++..+...
T Consensus 211 ~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 211 TLAKLRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp HHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 66677667899988876554 466677777554
No 245
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=36.35 E-value=1.5e+02 Score=26.76 Aligned_cols=105 Identities=11% Similarity=0.062 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCce
Q 014455 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~ 169 (424)
+.+-.|...+-...+ .+=.++-++.| ..+.+.. +++...+...+++++........-+..+.+.+...++|.
T Consensus 21 ~~al~~A~~la~~~~---a~l~ll~v~~~----~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dl 92 (290)
T 3mt0_A 21 GLALKRAQLIAGVTQ---SHLHLLVCEKR----RDHSAAL-NDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGL 92 (290)
T ss_dssp CHHHHHHHHHHHHHC---CEEEEEEECSS----SCCHHHH-HHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSE
T ss_pred hHHHHHHHHHHHhcC---CeEEEEEeeCc----HHHHHHH-HHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCE
Confidence 345567666544432 22222222333 3333334 467777778899888766533334556666655567887
Q ss_pred EEEEc-CCc-----hHHHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 170 IVCVS-GDG-----ILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 170 vV~vG-GDG-----Tl~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
||+.. |.+ .+..+...++.+ ...|+-++|.+..
T Consensus 93 iV~G~~~~~~~~~~~~gs~~~~vl~~------~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 93 IIKQHFPDNPLKKAILTPDDWKLLRF------APCPVLMTKTARP 131 (290)
T ss_dssp EEEECCCSCTTSTTSCCHHHHHHHHH------CSSCEEEECCCSC
T ss_pred EEEecccCCchhhcccCHHHHHHHhc------CCCCEEEecCCCC
Confidence 77542 222 234556666654 3789999995543
No 246
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=36.32 E-value=34 Score=32.76 Aligned_cols=66 Identities=17% Similarity=0.157 Sum_probs=41.1
Q ss_pred EEEEEcCCCCCcc-hhhchHHHHHHHHHhcCCeEEEEEcCC------h----hhHHHHHHHhccCCCceEE-EEcCCch
Q 014455 112 LYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ------Q----LHAKEIVKVLDLSKYDGIV-CVSGDGI 178 (424)
Q Consensus 112 ~~vivNP~sG~~~-a~~~~~~~v~~~l~~ag~~~~v~~T~~------~----~~a~~l~~~~~~~~~d~vV-~vGGDGT 178 (424)
-.-|+-|.|+-.. ....+ +.....|+..|+++.+-.+.. . ..|.++.+.+.....++|+ +.||+|+
T Consensus 15 ~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 92 (336)
T 3sr3_A 15 TIGIYSPSSPVTYTSPKRF-ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMNS 92 (336)
T ss_dssp EEEEECSSSCHHHHCHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSCG
T ss_pred EEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccccccH
Confidence 4568899887532 22335 466778999998877643321 1 2344555555556777776 5699996
No 247
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=36.26 E-value=24 Score=26.83 Aligned_cols=24 Identities=4% Similarity=0.268 Sum_probs=21.0
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
+.+.|...++++.+.|+++|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 468899999999999999998764
No 248
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=36.08 E-value=56 Score=27.45 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEE
Q 014455 129 FLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgi 202 (424)
+++.++..|++.|+++.-+= +.+|.-+..+++.+... ....||
T Consensus 14 lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g-------------------------------~~d~GI 62 (149)
T 3he8_A 14 LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSG-------------------------------ECDRGI 62 (149)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT-------------------------------SSSEEE
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC-------------------------------CCCEEE
Confidence 44689999999998775432 23455555555554321 345788
Q ss_pred ecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 203 VPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 203 iP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
+=||||++++-+.+.--|+ -.++..|-.+-.
T Consensus 63 liCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~ 97 (149)
T 3he8_A 63 VICGTGLGISIAANKVPGIRAAVCTNSYMARMSRE 97 (149)
T ss_dssp EEESSSHHHHHHHHTSTTCCEEECSSHHHHHHHHH
T ss_pred EEcCCcHHHHHHhhcCCCeEEEEeCCHHHHHHHHH
Confidence 8888888888776532232 225555544433
No 249
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=36.04 E-value=35 Score=30.01 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=32.2
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
..|+++++.+...++. ||..|+-|..-.+..|.+... ...+||||.
T Consensus 45 ~~A~~lg~~LA~~G~~-vVsGg~~GiM~aa~~gAl~~G------G~~iGVlP~ 90 (195)
T 1rcu_A 45 DICLELGRTLAKKGYL-VFNGGRDGVMELVSQGVREAG------GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHHTTCE-EEECCSSHHHHHHHHHHHHTT------CCEEEEEST
T ss_pred HHHHHHHHHHHHCCCE-EEeCCHHHHHHHHHHHHHHcC------CcEEEEeCC
Confidence 3456677777655554 445677788777888887653 578999997
No 250
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.97 E-value=34 Score=30.23 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=37.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
+++.+| |.+........+.+.+...|+..|+++++..... .+..++.+.+. +.|+|++-||+=+ ..+..|.
T Consensus 28 ~~i~~I--p~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~--~ad~I~l~GG~~~--~l~~~L~ 98 (206)
T 3l4e_A 28 KTVTFI--PTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLR--KNDFIYVTGGNTF--FLLQELK 98 (206)
T ss_dssp CEEEEE--CGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHH--HSSEEEECCSCHH--HHHHHHH
T ss_pred CEEEEE--CCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHH--hCCEEEECCCCHH--HHHHHHH
Confidence 566655 4433211111244678899999998766543222 12333333432 4788887665533 3444443
No 251
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=35.97 E-value=34 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.5
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
.+.+.|..++++++..|+++|+....
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 45788999999999999999998753
No 252
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=35.95 E-value=61 Score=27.55 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEEE--cCChhhHHHHHHH-hccCCCceEEEEcCCc-----hHHHHHHHhh
Q 014455 131 DDVKPLLEDANIQFTVQE--TTQQLHAKEIVKV-LDLSKYDGIVCVSGDG-----ILVEVVNGLL 187 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~--T~~~~~a~~l~~~-~~~~~~d~vV~vGGDG-----Tl~evvngL~ 187 (424)
..+...|++.|+++..+. ........+..++ .+..++|.|++.||=| -..|++..++
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~~~~~ 107 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLF 107 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGC
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHHHHhh
Confidence 368889999999875433 3333333333333 3446799999999977 2445554443
No 253
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=35.89 E-value=1.4e+02 Score=22.54 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=51.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCChhhHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEI 158 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~~~~a~~l 158 (424)
.-+.|....|..|......+.+.....+..-.++.|..+........ +.++..++..++ .+.+..... .++
T Consensus 25 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~----~~~ 96 (138)
T 4evm_A 25 VYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSE----ADFKNWYKGLDYKNLPVLVDPS----GKL 96 (138)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCH----HHHHHHHTTCCCTTCCEEECTT----CHH
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhH----HHHHHHHhhcCCCCeeEEECcc----hHH
Confidence 34456666677787777777776655333333333333332222222 467777877776 555443322 246
Q ss_pred HHHhccCCCceEEEEcCCch
Q 014455 159 VKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDGT 178 (424)
++......+-.++++.-||.
T Consensus 97 ~~~~~v~~~P~~~lid~~G~ 116 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDKEGK 116 (138)
T ss_dssp HHHTTCCSSSEEEEECTTCC
T ss_pred HHHcCcccCCeEEEECCCCc
Confidence 66666566777777777774
No 254
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=35.81 E-value=51 Score=27.03 Aligned_cols=70 Identities=6% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+|..+.|| |.+-. ..-|.+.|...|..+|+.+++.........-.-.+++...++-.++++|- .|+-++
T Consensus 6 ~~P~Qv~Il--pVs~~---~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~----kE~e~~ 75 (130)
T 1v95_A 6 SGPVDCSVI--VVNKQ---TKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ----QHQIHR 75 (130)
T ss_dssp CCCCTEEEE--ESSSG---GGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH----HHHHHT
T ss_pred CCCCeEEEE--EeCcc---hHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec----hHHhcC
Confidence 456555544 22222 22477899999999999999876521233334445555678888888874 355554
No 255
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=35.80 E-value=33 Score=30.71 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 155 AKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
|+++++.+...++ .||..||. |..-.+..|.+... ...+||||..
T Consensus 34 A~~lg~~LA~~G~-~vVsGGg~~GiM~aa~~gAl~~G------G~tiGVlP~~ 79 (215)
T 2a33_A 34 AVDLGNELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------RHVIGIIPKT 79 (215)
T ss_dssp HHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEESS
T ss_pred HHHHHHHHHHCCC-EEEECCChhhHhHHHHHHHHHcC------CcEEEEcchH
Confidence 4556666654333 44555665 88888888887653 5789999864
No 256
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=35.60 E-value=33 Score=28.91 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|..+++++.+.|+++|++.+...
T Consensus 97 rt~~l~A~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 97 NTLYIFAPSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence 468888999999999999999998654
No 257
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=35.52 E-value=30 Score=28.95 Aligned_cols=92 Identities=10% Similarity=0.069 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh------hhHH---HHHHHhccCCCceEEEEcCCchH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LHAK---EIVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~------~~a~---~l~~~~~~~~~d~vV~vGGDGTl 179 (424)
.+|+.|++-|.. .... + ......|+.+++++++.-.+.. +... ....++....||.|++.||.|.-
T Consensus 2 ~~ki~il~~~g~---~~~e-~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 76 (168)
T 3l18_A 2 SMKVLFLSADGF---EDLE-L-IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPE 76 (168)
T ss_dssp CCEEEEECCTTB---CHHH-H-HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHH
T ss_pred CcEEEEEeCCCc---cHHH-H-HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHH
Confidence 467888777633 1122 2 2456678888888776644321 1000 00112222369999999998863
Q ss_pred H--------HHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 180 V--------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 180 ~--------evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
. +.+..... ...+++-|=.|+. .+|+
T Consensus 77 ~~~~~~~l~~~l~~~~~-------~~k~i~aiC~G~~-~La~ 110 (168)
T 3l18_A 77 IVRLNEKAVMITRRMFE-------DDKPVASICHGPQ-ILIS 110 (168)
T ss_dssp HHTTCHHHHHHHHHHHH-------TTCCEEEETTTHH-HHHH
T ss_pred HhccCHHHHHHHHHHHH-------CCCEEEEECHhHH-HHHH
Confidence 2 12222222 2578888877753 3444
No 258
>2p5m_A Arginine repressor; alpha-beta, L-arginine binding domain, DNA binding protein; HET: ARG; 1.95A {Bacillus subtilis} SCOP: d.74.2.1
Probab=35.42 E-value=22 Score=26.65 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCeEE-----EEEcCChhhHHHHHHHhccCCC-ceEEEEcCCchH
Q 014455 132 DVKPLLEDANIQFT-----VQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGIL 179 (424)
Q Consensus 132 ~v~~~l~~ag~~~~-----v~~T~~~~~a~~l~~~~~~~~~-d~vV~vGGDGTl 179 (424)
++...++..-+.++ ++.-+.||.|.-++..++..+. +.+-++.||-|+
T Consensus 9 ~l~~~~~~~v~si~~~~n~vVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTI 62 (83)
T 2p5m_A 9 KLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMGTICGDDTI 62 (83)
T ss_dssp HHHHHHHHHEEEEEEETTEEEEEESTTCHHHHHHHHHTTTCTTCCEEEECSSEE
T ss_pred HHHHHHHHHEEEEEecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 45566665433332 3444568999999998876444 455578888774
No 259
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=35.15 E-value=63 Score=28.99 Aligned_cols=83 Identities=7% Similarity=0.125 Sum_probs=55.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~ 188 (424)
.+++.|+-.+.-- .-+ +.+..+| +++++.+.-..++++.+..+++..+++++|| |||+..+.+..+
T Consensus 106 ~~kIavVg~~~~~-----~~~-~~i~~ll---~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV---G~~~~~~~A~~~-- 171 (225)
T 2pju_A 106 TSSIGVVTYQETI-----PAL-VAFQKTF---NLRLDQRSYITEEDARGQINELKANGTEAVV---GAGLITDLAEEA-- 171 (225)
T ss_dssp TSCEEEEEESSCC-----HHH-HHHHHHH---TCCEEEEEESSHHHHHHHHHHHHHTTCCEEE---ESHHHHHHHHHT--
T ss_pred CCcEEEEeCchhh-----hHH-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCCEEE---CCHHHHHHHHHc--
Confidence 3577777554331 112 3455555 5778888888899999999999888999876 588877777654
Q ss_pred CcCcccccCCcEEEecCCChhhhhhhh
Q 014455 189 REDWNDAIKVPLGVVPAGTGNGMIKSL 215 (424)
Q Consensus 189 ~~~~~~~~~~plgiiP~GTgN~~Ar~l 215 (424)
.++--.|- |...+-..+
T Consensus 172 --------Gl~~vlI~--s~eSI~~Ai 188 (225)
T 2pju_A 172 --------GMTGIFIY--SAATVRQAF 188 (225)
T ss_dssp --------TSEEEESS--CHHHHHHHH
T ss_pred --------CCcEEEEC--CHHHHHHHH
Confidence 45544454 356666665
No 260
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=35.09 E-value=79 Score=26.76 Aligned_cols=96 Identities=20% Similarity=0.324 Sum_probs=55.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc------CCCceEEEEc----CCch-
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL------SKYDGIVCVS----GDGI- 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~------~~~d~vV~vG----GDGT- 178 (424)
.|+.|+.-..--. -..+.. +-....|.++|.+++++.....-+.--.++.+.. .+||+||+.| |+=.
T Consensus 13 ~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~H 90 (157)
T 2i0f_A 13 PHLLIVEARFYDD-LADALL-DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYH 90 (157)
T ss_dssp CEEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSST
T ss_pred cEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchH
Confidence 4677666433221 112233 3556677788877887777666665555555442 5799999988 4432
Q ss_pred ----HHHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 179 ----l~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
-+++..||++-.- +....+-.|+|...|-
T Consensus 91 fd~Va~~v~~gl~~vsl-~~~vPV~~GVLT~~~~ 123 (157)
T 2i0f_A 91 FDIVSNESCRALTDLSV-EESIAIGNGILTVENE 123 (157)
T ss_dssp THHHHHHHHHHHHHHHH-HTTCCEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCH
Confidence 4577778875421 1123445677766543
No 261
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=35.07 E-value=14 Score=27.65 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=19.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~ 102 (424)
+.+.|..+++++.+.|+++|+++
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhh
Confidence 46889999999999999999765
No 262
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=34.85 E-value=19 Score=39.39 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHhccCCCceEEEEcCCchHHHHHHHh-----------hcC-----cCcccccCCcEEEecCCChhhhhh
Q 014455 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGL-----------LER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 157 ~l~~~~~~~~~d~vV~vGGDGTl~evvngL-----------~~~-----~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
++++.+...+.|.+|++|||||+.-+. -| .+. ........+++--||.==-||+.-
T Consensus 267 ~~~~~L~~~gId~LvvIGGDGS~~gA~-~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~g 338 (941)
T 3opy_B 267 KACKNMIDMGIDALIVCGGDGSLTGAD-RFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSS 338 (941)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHH-HHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSS
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHH-HHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCC
Confidence 345556566899999999999998653 22 110 000111368888899877788875
No 263
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=34.64 E-value=60 Score=27.89 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.++| .+|-+-++|-. +++.|+..|++.|+++.-+= +.+|.-+..+++.+...
T Consensus 19 ~~Mk-IaIgsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g---------------- 76 (169)
T 3ph3_A 19 SHMK-IGIGSDHGGYN-----LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSG---------------- 76 (169)
T ss_dssp --CE-EEEEECGGGHH-----HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT----------------
T ss_pred CCCE-EEEEeCchHHH-----HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC----------------
Confidence 3445 44667777632 44689999999998775432 23455555555544321
Q ss_pred HHHHhhcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHH
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAV 232 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i 232 (424)
....||+=||||++++-+.+.--|+ -.++..|-++-
T Consensus 77 ---------------~~d~GIliCGTGiG~sIaANKv~GIRAAlc~d~~sA~~aR 116 (169)
T 3ph3_A 77 ---------------ECDRGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSR 116 (169)
T ss_dssp ---------------SSSEEEEEESSSHHHHHHHTTSTTCCEEECSSHHHHHHHH
T ss_pred ---------------CCCEEEEEcCCcHHHHHHhhcCCCeEEEEeCCHHHHHHHH
Confidence 3457888888888888776532232 22555554443
No 264
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.49 E-value=31 Score=26.47 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999988653
No 265
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=34.41 E-value=58 Score=28.38 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecCCChhhh
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGM 211 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~ 211 (424)
.+++++.+.+.++++.... -+++.++++++ ..++|+||.-||=+.+ |-+. .++|+--||. |+.|+
T Consensus 19 ~~~~i~~e~~~~i~i~~~~-l~~~v~~a~~~-~~~~dVIISRGgta~~------lr~~------~~iPVV~I~~-s~~Di 83 (196)
T 2q5c_A 19 LFPKLALEKNFIPITKTAS-LTRASKIAFGL-QDEVDAIISRGATSDY------IKKS------VSIPSISIKV-TRFDT 83 (196)
T ss_dssp HHHHHHHHHTCEEEEEECC-HHHHHHHHHHH-TTTCSEEEEEHHHHHH------HHTT------CSSCEEEECC-CHHHH
T ss_pred HHHHHHhhhCCceEEEECC-HHHHHHHHHHh-cCCCeEEEECChHHHH------HHHh------CCCCEEEEcC-CHhHH
Confidence 4555555556677765544 57788999998 7899999999986532 2222 3688888887 56666
Q ss_pred hhhh
Q 014455 212 IKSL 215 (424)
Q Consensus 212 Ar~l 215 (424)
-++|
T Consensus 84 l~al 87 (196)
T 2q5c_A 84 MRAV 87 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 266
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=34.32 E-value=44 Score=28.30 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=32.6
Q ss_pred HHHHH----HHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEcCCch-----HHHHHHHhh
Q 014455 132 DVKPL----LEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLL 187 (424)
Q Consensus 132 ~v~~~----l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT-----l~evvngL~ 187 (424)
.+... |++.|+++.. +.....+...+..+++...++|.||+.||=|- ..|++..+.
T Consensus 29 ~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~D~t~ea~~~~~ 95 (167)
T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRAKNQTPEATASFI 95 (167)
T ss_dssp HHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcChHHHHHHHh
Confidence 57777 8888876542 33444445555555544335999999999772 455555543
No 267
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=34.24 E-value=69 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
+-.+++.+|+..|++++.+.......+.+
T Consensus 33 ~C~~ak~~L~~~gi~y~~~di~~d~~~~~ 61 (111)
T 3zyw_A 33 FSKQMVEILHKHNIQFSSFDIFSDEEVRQ 61 (111)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGGCHHHHH
T ss_pred hHHHHHHHHHHcCCCeEEEECcCCHHHHH
Confidence 34678999999999988765543334433
No 268
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=34.13 E-value=1.6e+02 Score=23.31 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=51.9
Q ss_pred eEEeCCCCHHHHHH-HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh--hHHH
Q 014455 81 DFVFEPLSEDSKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKE 157 (424)
Q Consensus 81 ~~~~~~~~~~~~~~-w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~--~a~~ 157 (424)
-+.|....|..|.. ....+.+.........-.+|-+|...+..... .- +.++.+++..++.+.+..-.... ....
T Consensus 34 lv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 111 (160)
T 3lor_A 34 VVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVM-TP-EALKVFIDEFGIKFPVAVDMPREGQRIPS 111 (160)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS-CH-HHHHHHHHHTTCCSCEEEECCCTTCSSCH
T ss_pred EEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccC-CH-HHHHHHHHHcCCCCcEEECCccccchhhh
Confidence 34455556666766 35666666555443333444555432221111 12 46778888888776554433222 2223
Q ss_pred HHHHhccCCCceEEEEcCCch
Q 014455 158 IVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 158 l~~~~~~~~~d~vV~vGGDGT 178 (424)
+++.......-.++++..||.
T Consensus 112 ~~~~~~v~~~P~~~lid~~G~ 132 (160)
T 3lor_A 112 TMKKYRLEGTPSIILADRKGR 132 (160)
T ss_dssp HHHHTTCCSSSEEEEECTTSB
T ss_pred HHHhcccCccceEEEECCCCc
Confidence 566665556667777877774
No 269
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=34.00 E-value=89 Score=26.41 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=23.1
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhcC--CeEEEEEc
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQET 149 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag--~~~~v~~T 149 (424)
+++++|+ .|+..++...++. +.+...++++| .+++++..
T Consensus 2 mkilii~~S~~~~~s~t~~la-~~~~~~l~~~g~~~~v~~~dl 43 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLT-DYFIEQWREKHVADEITVRDL 43 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHH-HHHHHHHHHHCTTCEEEEEET
T ss_pred CeEEEEEeCCCCCCChHHHHH-HHHHHHHHHhCCCCeEEEEec
Confidence 4666555 5553234444444 57777788776 77776654
No 270
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=33.88 E-value=29 Score=26.58 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
+.+.|..+++++.+.|+++|++..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 568899999999999999998764
No 271
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=33.74 E-value=97 Score=27.56 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.9
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T 149 (424)
||+++|. +|..++ ....+ .+.+...++++|.+++++.-
T Consensus 2 mkiLiI~gspr~~S-~t~~l-~~~~~~~l~~~g~ev~~~dL 40 (228)
T 3tem_A 2 KKVLIVYAHQEPKS-FNGSL-KNVAVDELSRQGCTVTVSDL 40 (228)
T ss_dssp CEEEEEECCSCTTS-HHHHH-HHHHHHHHHHHTCEEEEEET
T ss_pred CEEEEEEeCCCCCC-HHHHH-HHHHHHHHHHCCCEEEEEEh
Confidence 4566555 666543 23333 35777888888988887654
No 272
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=33.62 E-value=1.2e+02 Score=26.14 Aligned_cols=72 Identities=11% Similarity=-0.030 Sum_probs=46.2
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHH---------------HHhccCCCceEEEEcCC
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV---------------KVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~---------------~~~~~~~~d~vV~vGGD 176 (424)
+..|.|+++|-|+.. ..-.+...|.+.| ++-++.....+.+..+. +++ .+.||.||+=.+-
T Consensus 2 vI~v~s~KGGvGKTT--~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l-~~~yD~viiD~p~ 77 (209)
T 3cwq_A 2 IITVASFKGGVGKTT--TAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKY-APKYQNIVIDTQA 77 (209)
T ss_dssp EEEEEESSTTSSHHH--HHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHH-GGGCSEEEEEEEC
T ss_pred EEEEEcCCCCCcHHH--HHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHh-hhcCCEEEEeCCC
Confidence 567889999999875 2346788888889 88887777666655433 223 2468887765444
Q ss_pred c-hHHHHHHHhh
Q 014455 177 G-ILVEVVNGLL 187 (424)
Q Consensus 177 G-Tl~evvngL~ 187 (424)
| .-..+.+.+.
T Consensus 78 ~~~~~~~~~~l~ 89 (209)
T 3cwq_A 78 RPEDEDLEALAD 89 (209)
T ss_dssp CCSSSHHHHHHH
T ss_pred CcCcHHHHHHHH
Confidence 4 2233344443
No 273
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=33.43 E-value=30 Score=27.58 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=22.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
++|.|...++++...|+++|++.+.
T Consensus 99 ~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 99 SEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5788999999999999999998764
No 274
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=33.09 E-value=1.7e+02 Score=22.78 Aligned_cols=66 Identities=9% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHHhcCC-eEEEEEcCChhhHHHHHH-HhccCCCceEEEEc-CCch-----HHHHHHHhhcCcCcccccCCcEEEe
Q 014455 132 DVKPLLEDANI-QFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 132 ~v~~~l~~ag~-~~~v~~T~~~~~a~~l~~-~~~~~~~d~vV~vG-GDGT-----l~evvngL~~~~~~~~~~~~plgii 203 (424)
.+...+...|+ +++...... .-+.++.+ .+...++|.||+.. |-+. +..+.+.++.+ .+.|+-++
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g-~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pVlvV 145 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYG-IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDH------APCNVIVI 145 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEE-CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHH------CSSEEEEE
T ss_pred HHHHHHHhcCCcceEEEEecC-ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhcc------CCCCEEEe
Confidence 44555666677 666544332 34566777 56556788877652 3332 23445555544 25777776
Q ss_pred c
Q 014455 204 P 204 (424)
Q Consensus 204 P 204 (424)
|
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 5
No 275
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=32.45 E-value=32 Score=27.56 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
+.+.|..++.++.+.|+++|+...
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 276
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=32.44 E-value=71 Score=30.55 Aligned_cols=75 Identities=19% Similarity=0.267 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhh-c--CCCcEEEEEEcCCCCCcch--hhchHHHHHHH---HHhcCCeEEEEEcCChhhHHHHHHHhcc
Q 014455 93 RLWCEKLRDFIDS-F--GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDL 164 (424)
Q Consensus 93 ~~w~~~~~~~~~~-~--~r~~~~~vivNP~sG~~~a--~~~~~~~v~~~---l~~ag~~~~v~~T~~~~~a~~l~~~~~~ 164 (424)
..-...+.+.+.. + .+||=...=+|||||.+-. .... +.+.|. +++.|+++. .|-.|-.+......
T Consensus 186 ~~~i~~~~~~l~~~fGi~~PrIAV~gLNPHAGE~G~~G~EE~-~iI~PAi~~lr~~Gi~~~-----GP~paDt~F~~~~~ 259 (334)
T 3lxy_A 186 HEVITILDNDLKTKFGITQPQIYVCGLNPHAGEGGHMGHEEI-DTIIPALNTLRQQGINLI-----GPLPADTLFQPKYL 259 (334)
T ss_dssp HHHHHHHHHHHHHTSCCSSCCEEEECSSGGGGGGGTTCSHHH-HTHHHHHHHHHHTTCCEE-----EEECHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEecCCCCCCCCCCCchhH-HHHHHHHHHHHHCCCcee-----CCCChHHhcChhhh
Confidence 3333333344443 3 3555444447999985432 1111 234444 445677653 33334333333334
Q ss_pred CCCceEEEE
Q 014455 165 SKYDGIVCV 173 (424)
Q Consensus 165 ~~~d~vV~v 173 (424)
.+||+||+.
T Consensus 260 ~~~D~vlaM 268 (334)
T 3lxy_A 260 QHADAVLAM 268 (334)
T ss_dssp TTCSEEEES
T ss_pred ccCCEEEEc
Confidence 689999976
No 277
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=32.29 E-value=2.2e+02 Score=25.07 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-ChhhHHHHHHHhccC---CCceEEEEcCCchHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLS---KYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~---~~d~vV~vGGDGTl~evvn 184 (424)
.+++.+|..|..- ......+ +-+...|+++++++.+.... ....+.+.++++-.. +.++|+ +..|.+...+++
T Consensus 118 ~~~i~~i~~~~~~-~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~ 194 (277)
T 3cs3_A 118 SKKVLLLSGPEKG-YDSQERL-AVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYK 194 (277)
T ss_dssp CSCEEEEECCTTS-HHHHHHH-HHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHH
T ss_pred CceEEEEeCCccC-ccHHHHH-HHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHH
Confidence 4678777766432 2222223 45677788889887644433 234455666655332 456655 577888888999
Q ss_pred HhhcC
Q 014455 185 GLLER 189 (424)
Q Consensus 185 gL~~~ 189 (424)
.|.+.
T Consensus 195 al~~~ 199 (277)
T 3cs3_A 195 YVAET 199 (277)
T ss_dssp HHTTS
T ss_pred HHHHc
Confidence 98765
No 278
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=32.21 E-value=42 Score=26.57 Aligned_cols=27 Identities=15% Similarity=0.339 Sum_probs=23.3
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
.+.+.|...++++...|+++|+..+..
T Consensus 103 ~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 103 VTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999988753
No 279
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=32.08 E-value=96 Score=25.51 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE-cCCchHHH-----HHHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV-SGDGILVE-----VVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v-GGDGTl~e-----vvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.+...+...|++++...... .-+..|.+.+...++|.||+. -|-+.+.+ +.+.++.+ ..+|+-++|.
T Consensus 91 ~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~------a~~pVlvv~~ 163 (175)
T 2gm3_A 91 FFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKH------AECPVMTIKR 163 (175)
T ss_dssp HHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHH------CSSCEEEEEC
T ss_pred HHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhC------CCCCEEEEcC
Confidence 34445566788876554432 335566666555578877765 34555443 44555554 3689999996
Q ss_pred C
Q 014455 206 G 206 (424)
Q Consensus 206 G 206 (424)
.
T Consensus 164 ~ 164 (175)
T 2gm3_A 164 N 164 (175)
T ss_dssp C
T ss_pred C
Confidence 5
No 280
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=31.96 E-value=3.2e+02 Score=25.54 Aligned_cols=80 Identities=18% Similarity=0.198 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (424)
+.++...+.+++.+..+ + +...+.+|.= |...+.+.|.+.-....++.|++++.+. +..+.+..+..++
T Consensus 13 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv---g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 89 (300)
T 4a26_A 13 AIAAAIRSELKDKVAALRELYGGRVPGLASIIV---GQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEK 89 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEE---SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEe---CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35556666666554322 3 3344444432 3444556787777888999999887665 3445566666777
Q ss_pred hccC-CCceEEE
Q 014455 162 LDLS-KYDGIVC 172 (424)
Q Consensus 162 ~~~~-~~d~vV~ 172 (424)
+..+ ..|+|++
T Consensus 90 lN~d~~v~GIlV 101 (300)
T 4a26_A 90 LNNDPNCHGIIV 101 (300)
T ss_dssp HHTCTTCCEEEE
T ss_pred hcCCCCCCEEEE
Confidence 7543 5556553
No 281
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=31.89 E-value=46 Score=26.02 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=23.0
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
.+.+.|...++++...|+++|+..+..
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999988653
No 282
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=31.81 E-value=1.3e+02 Score=26.09 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCe--E--EEEEcCChhhHHHHHHHhcc-CCCceEEEEcCCc-----hHHHHHHHhhcC
Q 014455 131 DDVKPLLEDANIQ--F--TVQETTQQLHAKEIVKVLDL-SKYDGIVCVSGDG-----ILVEVVNGLLER 189 (424)
Q Consensus 131 ~~v~~~l~~ag~~--~--~v~~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDG-----Tl~evvngL~~~ 189 (424)
..+..+|++.|++ + ..+.........+..+++.. .++|.||+.||=| ...|++..+..+
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~~~~~~ 94 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADR 94 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHTCSE
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHHHHhcc
Confidence 3678889988876 2 22334444444444444433 3799999999976 245666655443
No 283
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=31.81 E-value=32 Score=26.54 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++.+.|+++|+..+..
T Consensus 75 r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 75 RTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999998743
No 284
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=31.72 E-value=30 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
++|.|...++++.+.|+++|+..+..
T Consensus 95 ~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999988653
No 285
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=31.61 E-value=1.8e+02 Score=22.39 Aligned_cols=90 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (424)
-+.|....|..|......+.+.........-.++.+|....... .+.++.+++..++.+.+..-... ++++
T Consensus 38 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~-----~~~~~~~~~~~~~~~~~~~d~~~----~~~~ 108 (145)
T 3erw_A 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQN-----QQVVEDFIKANKLTFPIVLDSKG----ELMK 108 (145)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSC-----HHHHHHHHHHTTCCSCEEECSSS----HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCC-----HHHHHHHHHHcCCceeEEEcCch----hHHH
Confidence 34455666777887777777766655433344555665443221 13567777778887765543332 4566
Q ss_pred HhccCCCceEEEEcCCchH
Q 014455 161 VLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGTl 179 (424)
.+....+-.++++..||.+
T Consensus 109 ~~~v~~~P~~~lid~~G~i 127 (145)
T 3erw_A 109 EYHIITIPTSFLLNEKGEI 127 (145)
T ss_dssp HTTCCEESEEEEECTTCCE
T ss_pred hcCcCccCeEEEEcCCCcE
Confidence 6665667778888888864
No 286
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=31.54 E-value=1.9e+02 Score=26.94 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=48.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhc--CCeEEEEE--cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~a--g~~~~v~~--T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evv 183 (424)
..+++.+|+ +...-+ .... +.++..|++. |+++.... .....+....++++...+.|+|++++-+.....++
T Consensus 141 g~~~vaii~-~~~~~g--~~~~-~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~ 216 (387)
T 3i45_A 141 PITRWATIA-PNYEYG--QSAV-ARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFV 216 (387)
T ss_dssp SCCEEEEEC-CSSHHH--HHHH-HHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHH
T ss_pred CCCeEEEEe-CCchHh--HHHH-HHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHH
Confidence 347888776 322222 2223 5677888888 77653322 22234556666666667899999888777777777
Q ss_pred HHhhcC
Q 014455 184 NGLLER 189 (424)
Q Consensus 184 ngL~~~ 189 (424)
..+.+.
T Consensus 217 ~~~~~~ 222 (387)
T 3i45_A 217 REGRVR 222 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777554
No 287
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=31.53 E-value=71 Score=27.00 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=49.7
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
.|-+-++|- .+++.++..|++.|+++.-+=| .+|.-+..+++.+...
T Consensus 16 ~igsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g---------------------- 68 (155)
T 1o1x_A 16 AIASDHAAF-----ELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSN---------------------- 68 (155)
T ss_dssp EEEECSTTH-----HHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT----------------------
T ss_pred EEeeCchHH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcC----------------------
Confidence 344566653 2446899999999987754422 3455555555544321
Q ss_pred cCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHH
Q 014455 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAV 232 (424)
Q Consensus 188 ~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i 232 (424)
....||+=||||++++-+.+.--|+ -.++..|-++-
T Consensus 69 ---------~~d~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar 108 (155)
T 1o1x_A 69 ---------EADFGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLAR 108 (155)
T ss_dssp ---------SCSEEEEEESSSHHHHHHHTTSTTCCEEECSSHHHHHHHH
T ss_pred ---------CCceEEEEcCCcHHHHHHhhcCCCeEEEEeCCHHHHHHHH
Confidence 3567888899999888877532232 12555554443
No 288
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=31.34 E-value=32 Score=29.51 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=34.1
Q ss_pred hhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 153 ~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
..|+++++.+...+ -.||..||.|....+..|.++.. ...+|++|.
T Consensus 20 ~~A~~lg~~La~~g-~~lV~Ggg~GiM~aa~~gAl~~g------G~tiGV~~~ 65 (171)
T 1weh_A 20 ARWVRYGEVLAEEG-FGLACGGYQGGMEALARGVKAKG------GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHHTT-EEEEECCSSTHHHHHHHHHHHTT------CCEEECCCG
T ss_pred HHHHHHHHHHHHCC-CEEEeCChhhHHHHHHHHHHHcC------CcEEEEecc
Confidence 35667777776544 46777788899999999987753 578999885
No 289
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=31.31 E-value=35 Score=27.43 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.|.|..+++++.+.|+++|+....
T Consensus 96 r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 96 QRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5699999999999999999988754
No 290
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=31.09 E-value=48 Score=28.20 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh---------hHHH-----HHHHhccCCCceEEEE
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---------HAKE-----IVKVLDLSKYDGIVCV 173 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~---------~a~~-----l~~~~~~~~~d~vV~v 173 (424)
.++++.|++.|..- ... + ......|+.+++++++.-.+... +... -..++....||.||+.
T Consensus 8 ~~~~v~il~~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livp 82 (190)
T 2vrn_A 8 TGKKIAILAADGVE---EIE-L-TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLP 82 (190)
T ss_dssp TTCEEEEECCTTCB---HHH-H-HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEEC
T ss_pred CCCEEEEEeCCCCC---HHH-H-HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEEC
Confidence 45788888765332 111 2 24566788888888766443210 0000 0112222479999999
Q ss_pred cCCchHHHH-----HHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 174 SGDGILVEV-----VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 174 GGDGTl~ev-----vngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
||.+..... +..++++- .....+++-|=.|.. .+|+.
T Consensus 83 GG~~~~~~~~~~~~l~~~l~~~---~~~gk~i~aiC~G~~-~La~a 124 (190)
T 2vrn_A 83 GGTVNPDKLRLEEGAMKFVRDM---YDAGKPIAAICHGPW-SLSET 124 (190)
T ss_dssp CCTHHHHHHTTCHHHHHHHHHH---HHTTCCEEEC-CTTH-HHHHT
T ss_pred CCchhHHHHhhCHHHHHHHHHH---HHcCCEEEEECHhHH-HHHhC
Confidence 997433221 11121110 012578888888874 45543
No 291
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.08 E-value=33 Score=26.85 Aligned_cols=26 Identities=8% Similarity=0.149 Sum_probs=22.4
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
.+.+.|...++++++.|+++|+....
T Consensus 79 ~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 79 SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 36788999999999999999988754
No 292
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=31.05 E-value=32 Score=27.11 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=23.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 568899999999999999999987643
No 293
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=30.97 E-value=25 Score=27.37 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=33.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~ 153 (424)
-+++.|.++|.+|..++.+.|-+.--+-|+..+-.+.+...+..+
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~ 63 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSD 63 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCS
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCC
Confidence 478999999999987776666556677788887777766655543
No 294
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=30.97 E-value=1.7e+02 Score=26.17 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhcc-----CCCceEEEEcCCchHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDL-----SKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~-----~~~d~vV~vGGDGTl~ev 182 (424)
.+++.+|..|..- ......+ +-.+..|+++|+++.+..+.. ...+.+.++++.. ..+++|+ +..|.+--.+
T Consensus 131 ~~~I~~i~~~~~~-~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~ 207 (295)
T 3hcw_A 131 VDELIFITEKGNF-EVSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAI 207 (295)
T ss_dssp CSEEEEEEESSCC-HHHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHH
T ss_pred CccEEEEcCCccc-hhHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHH
Confidence 4678877765432 2222233 467788899999887665543 3344455554421 2567665 5888888888
Q ss_pred HHHhhcCcCcccccCCc--EEEecCC
Q 014455 183 VNGLLEREDWNDAIKVP--LGVVPAG 206 (424)
Q Consensus 183 vngL~~~~~~~~~~~~p--lgiiP~G 206 (424)
++.|.+.. .++| ++|+-.+
T Consensus 208 ~~al~~~g-----~~vP~di~vig~D 228 (295)
T 3hcw_A 208 LSVLYELN-----IEIPKDVMTATFN 228 (295)
T ss_dssp HHHHHHTT-----CCTTTTEEEEEEC
T ss_pred HHHHHHcC-----CCCCCceEEEEeC
Confidence 99887663 2333 6666544
No 295
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.96 E-value=42 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|..+++++++.|+++|+....
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 3688999999999999999998864
No 296
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=30.95 E-value=31 Score=25.95 Aligned_cols=22 Identities=9% Similarity=0.584 Sum_probs=19.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRD 101 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~ 101 (424)
+.+.|...++++...|+++|+.
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5788999999999999999875
No 297
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=30.95 E-value=1.1e+02 Score=25.45 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
++.++....+.|++++.+.+.+.++..+...++. +++|.||+-
T Consensus 31 ~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~-~~~dgiiiN 73 (143)
T 1gqo_A 31 ETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAE-EQYSGIVLN 73 (143)
T ss_dssp HHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHT-TTCSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEEc
Confidence 3456666667899999999999999888888774 458887753
No 298
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=30.71 E-value=64 Score=30.56 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=38.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..-+.|+-||-.-.+++.+.....++.+-+++|+.+. ..+.-.+ .++.+.+...++|.||++|=--.|.
T Consensus 31 ~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ilp 99 (318)
T 3q0i_A 31 HEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY--QPENFKS-DESKQQLAALNADLMVVVAYGLLLP 99 (318)
T ss_dssp SEEEEEECCCC---------CCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHTTCCSEEEESSCCSCCC
T ss_pred CcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEE--ccCcCCC-HHHHHHHHhcCCCEEEEeCccccCC
Confidence 3456788888655555544444578888888999862 2322222 2445555556899999887654443
No 299
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=30.69 E-value=1.4e+02 Score=27.46 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=42.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCch
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
.+.+++.+++. .....-...++ +.++..+++.|+.+.+..+... ....++.+.+...++|+|| .+.+.+
T Consensus 58 ~~~~~Igvi~~-~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 58 KNSKTIGLMVP-NISNPFFNQMA-SVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp --CCEEEEEES-CTTSHHHHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCCEEEEEeC-CCCCcHHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 34556777763 33222222233 5678888889998887766532 2334556666667899999 887755
No 300
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=30.63 E-value=1.1e+02 Score=26.14 Aligned_cols=40 Identities=8% Similarity=0.232 Sum_probs=23.7
Q ss_pred cEEEEEE-cCCC-CCcchhhchHHHHHHHHHhcC--CeEEEEEcC
Q 014455 110 KRLYIFV-NPFG-GKKIASKIFLDDVKPLLEDAN--IQFTVQETT 150 (424)
Q Consensus 110 ~~~~viv-NP~s-G~~~a~~~~~~~v~~~l~~ag--~~~~v~~T~ 150 (424)
+++++|+ .|+. .++...++. +.+...++++| .+++++.-.
T Consensus 2 ~kilii~gS~r~~~~s~t~~la-~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 2 SKLLVVKAHPLTKEESRSVRAL-ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp CEEEEEECCSSCTTTCHHHHHH-HHHHHHHHHHCTTSEEEEEETT
T ss_pred CeEEEEEecCCCCCCCHHHHHH-HHHHHHHHHhCCCCeEEEeeCC
Confidence 4565555 5663 234444433 57777788876 788776543
No 301
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=30.56 E-value=2e+02 Score=26.60 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
..+++.+|... ...+ .. ..+.++..|+++|+++... ......+....+.++...+.|+|++.+-......++..
T Consensus 139 g~~~vaii~~~-~~~g--~~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~ 214 (375)
T 3i09_A 139 GGKTWFFLTAD-YAFG--KA-LEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKA 214 (375)
T ss_dssp TCCEEEEEEES-SHHH--HH-HHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHH
T ss_pred CCceEEEEecc-cHHH--HH-HHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHH
Confidence 35788877532 2112 22 2357788899999876422 22223344455566655688988876544466667777
Q ss_pred hhcC
Q 014455 186 LLER 189 (424)
Q Consensus 186 L~~~ 189 (424)
+.+.
T Consensus 215 ~~~~ 218 (375)
T 3i09_A 215 AKEF 218 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6554
No 302
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.53 E-value=30 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.430 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 100 THYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999998864
No 303
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=30.42 E-value=75 Score=24.98 Aligned_cols=57 Identities=12% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
.++++++++.. +|-+.+. ....+++..|.+.|+++++...... ++.. . ..++|.|+.
T Consensus 19 ~~~kkIlvvC~--sG~gTS~-ll~~kl~~~~~~~gi~~~V~~~~~~-~~~~---~--~~~~DlIis 75 (113)
T 1tvm_A 19 GSKRKIIVACG--GAVATST-MAAEEIKELCQSHNIPVELIQCRVN-EIET---Y--MDGVHLICT 75 (113)
T ss_dssp CSSEEEEEESC--SCSSHHH-HHHHHHHHHHHHTTCCEEEEEECTT-TTTT---S--TTSCSEEEE
T ss_pred ccccEEEEECC--CCHHHHH-HHHHHHHHHHHHcCCeEEEEEecHH-HHhh---c--cCCCCEEEE
Confidence 45677777764 3444433 3457899999999998765544322 2211 1 246886663
No 304
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.32 E-value=59 Score=28.84 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCeEEEEEcCC-hhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+.+ .+.+..+.. .++|+-.+-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~~~-------~~iPvV~~~~ 86 (276)
T 2h0a_A 19 EGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT-ERFEEGRLP-------TERPVVLVDA 86 (276)
T ss_dssp HHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------CCS-------CSSCEEEESS
T ss_pred HHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHhh-------cCCCEEEEec
Confidence 567788888898876654432 222334555665578999999998765 244444322 2678776643
No 305
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=30.20 E-value=1.5e+02 Score=29.59 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred HHHH-HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-----------ChhhHHHH
Q 014455 91 SKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKEI 158 (424)
Q Consensus 91 ~~~~-w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-----------~~~~a~~l 158 (424)
.... +.+.+.+.+... ..+.+-|++.+..|.+ . ..+.++|++.|+++..+..+ .+.+...+
T Consensus 158 ~~~~~Yi~~~~~~~~~~-~~~~lkivvd~~~Ga~--~----~~~~~~l~~lG~~v~~l~~~~~f~~~~~~p~~~e~l~~l 230 (481)
T 4hjh_A 158 AALQAYADRYAGFLGKG-SLNGLRVGVYQHSSVA--R----DLLMYLLTTLGVEPVALGRSDIFVPVDTEALRPEDIALL 230 (481)
T ss_dssp HHHHHHHHHHHHHHCTT-TTTTCEEEEEEETCTT--H----HHHHHHHHHTTCEEEEEEECSSCCCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHhcCcc-cccCCEEEEECCCChH--H----HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCHHHHHHH
Confidence 3455 778777766432 1234667777754443 3 24567888999887655311 22334444
Q ss_pred HHHhccCCCceEEEEcCCc
Q 014455 159 VKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDG 177 (424)
.+.+...++|..++.=|||
T Consensus 231 ~~~v~~~~aDlgia~DgDa 249 (481)
T 4hjh_A 231 AQWGKSDRLDAIVSTDGDA 249 (481)
T ss_dssp HHHHTSTTCSEEEEECTTS
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 4444445566655555554
No 306
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=30.16 E-value=39 Score=36.06 Aligned_cols=85 Identities=8% Similarity=0.074 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh----hHHHH-----HHHhccCCCceEEEEcCCch--
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIVCVSGDGI-- 178 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~----~a~~l-----~~~~~~~~~d~vV~vGGDGT-- 178 (424)
+++.|++-+ |- .... + ..+...|+++|++++++-.+... +...+ ..++....||+||+.|| |+
T Consensus 601 rKVaILlaD--Gf-Ee~E-l-~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~ 674 (753)
T 3ttv_A 601 RVVAILLND--EV-RSAD-L-LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIAD 674 (753)
T ss_dssp CEEEEECCT--TC-CHHH-H-HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGG
T ss_pred CEEEEEecC--CC-CHHH-H-HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHH
Confidence 678888765 22 2222 2 35778899999998887654321 11111 11222235999999999 74
Q ss_pred ------HHHHHHHhhcCcCcccccCCcEEEecCCC
Q 014455 179 ------LVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (424)
Q Consensus 179 ------l~evvngL~~~~~~~~~~~~plgiiP~GT 207 (424)
+.+.|.....+ ..+||.|-.|.
T Consensus 675 Lr~d~~vl~~Vre~~~~-------gKpIAAIC~Gp 702 (753)
T 3ttv_A 675 IADNGDANYYLMEAYKH-------LKPIALAGDAR 702 (753)
T ss_dssp TTTCHHHHHHHHHHHHT-------TCCEEEEGGGG
T ss_pred hhhCHHHHHHHHHHHhc-------CCeEEEECchH
Confidence 33344444433 57899988775
No 307
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=30.09 E-value=1.2e+02 Score=26.86 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=47.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+.+++.|++. .....--..++ +.++..+++.|+.+.+..+..... .+... ++|+||+.+.|-+ .+.+..+
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~-----~~~~~-~vdgiI~~~~~~~-~~~~~~l 76 (277)
T 3cs3_A 6 RQTNIIGVYLA-DYGGSFYGELL-EGIKKGLALFDYEMIVCSGKKSHL-----FIPEK-MVDGAIILDWTFP-TKEIEKF 76 (277)
T ss_dssp CCCCEEEEEEC-SSCTTTHHHHH-HHHHHHHHTTTCEEEEEESTTTTT-----CCCTT-TCSEEEEECTTSC-HHHHHHH
T ss_pred cCCcEEEEEec-CCCChhHHHHH-HHHHHHHHHCCCeEEEEeCCCCHH-----HHhhc-cccEEEEecCCCC-HHHHHHH
Confidence 45566777763 32222222233 567788888999887776653221 11111 7999999998765 3556655
Q ss_pred hcCcCcccccCCcEEEe
Q 014455 187 LEREDWNDAIKVPLGVV 203 (424)
Q Consensus 187 ~~~~~~~~~~~~plgii 203 (424)
... .+|+-.+
T Consensus 77 ~~~-------~iPvV~~ 86 (277)
T 3cs3_A 77 AER-------GHSIVVL 86 (277)
T ss_dssp HHT-------TCEEEES
T ss_pred Hhc-------CCCEEEE
Confidence 443 5776665
No 308
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=29.90 E-value=76 Score=25.97 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhccCCCceEEEEc-CCchH-----HHHHHHhhcCcCcccccCCcEEEe
Q 014455 132 DVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGIL-----VEVVNGLLEREDWNDAIKVPLGVV 203 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDGTl-----~evvngL~~~~~~~~~~~~plgii 203 (424)
.+...+...|++++. .... ..-+..|.+.+...++|.||+.. |-+.+ ..+.+.++.+ ...|+-++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~-g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~------~~~PVlvv 154 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRF-GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRK------TKKPVLII 154 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHHcCCceeeeeEEec-CChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHh------CCCCEEEE
Confidence 344455556777664 3322 23445666666556788777653 23333 3455666654 36899999
Q ss_pred cCCChhh
Q 014455 204 PAGTGNG 210 (424)
Q Consensus 204 P~GTgN~ 210 (424)
|....+.
T Consensus 155 ~~~~~~~ 161 (170)
T 2dum_A 155 KEVDENE 161 (170)
T ss_dssp CCCCCC-
T ss_pred ccCCccc
Confidence 9765554
No 309
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=29.69 E-value=1e+02 Score=25.41 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=44.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL 186 (424)
++++||+=..+ |...++- +.+...+... .++++...... .. +...||.||++. |+|.+...+..+
T Consensus 2 mkilIiY~S~t--GnT~~vA-~~ia~~l~~~--~v~~~~~~~~~-----~~--~l~~~d~ii~g~p~y~~g~~p~~~~~f 69 (169)
T 1obo_A 2 KKIGLFYGTQT--GKTESVA-EIIRDEFGND--VVTLHDVSQAE-----VT--DLNDYQYLIIGCPTLNIGELQSDWEGL 69 (169)
T ss_dssp CSEEEEECCSS--SHHHHHH-HHHHHHHCTT--TEEEEETTTCC-----GG--GGGGCSEEEEEEEEETTTEECHHHHHH
T ss_pred CeEEEEEECCC--chHHHHH-HHHHHHhCcC--CcEEEEcccCC-----HH--HHhhCCEEEEEEeeCCCCcCCHHHHHH
Confidence 46788885544 4555433 5777777654 45555433211 01 234688888765 667665555544
Q ss_pred hcCcCcccccCCcEEEecCC
Q 014455 187 LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~G 206 (424)
+..-........+++++-.|
T Consensus 70 l~~l~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 70 YSELDDVDFNGKLVAYFGTG 89 (169)
T ss_dssp HTTGGGCCCTTCEEEEEEEC
T ss_pred HHHhhhcCcCCCEEEEEEEC
Confidence 43211001124566665444
No 310
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=29.69 E-value=1.1e+02 Score=27.18 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=35.3
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhc-CCeEEEEEcCC---------------------h--hhHHHHHHHhcc
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ---------------------Q--LHAKEIVKVLDL 164 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~a-g~~~~v~~T~~---------------------~--~~a~~l~~~~~~ 164 (424)
+++++|+ .|+. .+...++. +.+...++++ |.+++++.... . .+..++.+++.
T Consensus 2 mkIliI~gS~r~-~s~T~~la-~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~- 78 (242)
T 1sqs_A 2 NKIFIYAGVRNH-NSKTLEYT-KRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELL- 78 (242)
T ss_dssp CEEEEEECCCCT-TCHHHHHH-HHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHH-
T ss_pred CeEEEEECCCCC-CChHHHHH-HHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHH-
Confidence 4666665 4442 23444433 5677777777 88887764321 1 34455555553
Q ss_pred CCCceEEEEc
Q 014455 165 SKYDGIVCVS 174 (424)
Q Consensus 165 ~~~d~vV~vG 174 (424)
.+|+||++.
T Consensus 79 -~AD~iI~~s 87 (242)
T 1sqs_A 79 -ESDIIIISS 87 (242)
T ss_dssp -HCSEEEEEE
T ss_pred -HCCEEEEEc
Confidence 578888765
No 311
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=29.62 E-value=89 Score=29.47 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=38.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..-+.|+-||-.-.+++.+.....++..-+++|+.+ +..+...+ .++.+.+...++|.||++|=--.|.
T Consensus 27 ~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ilp 95 (314)
T 1fmt_A 27 HNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPV--FQPVSLRP-QENQQLVAELQADVMVVVAYGLILP 95 (314)
T ss_dssp CEEEEEECCCCBC------CBCCHHHHHHHHTTCCE--ECCSCSCS-HHHHHHHHHTTCSEEEEESCCSCCC
T ss_pred CcEEEEEeCCCCccccccccCcCHHHHHHHHcCCcE--EecCCCCC-HHHHHHHHhcCCCEEEEeeccccCC
Confidence 345667779865555555544456888888899886 23332222 2344444445799999998644443
No 312
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=29.54 E-value=94 Score=27.15 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=47.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHhh
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL~ 187 (424)
.+++.+|..+..+.......+ +-.+..++++|+++++.... ....+.+.++++-..++++|+ |..|.+--.+++.|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~-~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~-~~~d~~A~g~~~al~ 192 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRH-EAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALL-CATDTLALGASKYLQ 192 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHH-HHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTCCEEE-ESSHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcccHHHHH-HHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCCCEEE-EeChHHHHHHHHHHH
Confidence 467777765422222222223 45677788888876544333 234455555555434567665 577888888888887
Q ss_pred cCc
Q 014455 188 ERE 190 (424)
Q Consensus 188 ~~~ 190 (424)
+..
T Consensus 193 ~~g 195 (255)
T 1byk_A 193 EQR 195 (255)
T ss_dssp HTT
T ss_pred HcC
Confidence 653
No 313
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.49 E-value=38 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.469 Sum_probs=21.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~ 103 (424)
+.+.|...++++.+.|+++|+..+
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 96 RTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHH
Confidence 578899999999999999998875
No 314
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=29.37 E-value=93 Score=31.10 Aligned_cols=50 Identities=10% Similarity=0.132 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
+....+.+.+.+.+.. +.+.+-|++.|..|.+.. .+.++|++.|+++...
T Consensus 175 d~~~~Y~~~l~~~~~~--~~~~lkivvD~~nG~~~~------~~~~ll~~lG~~v~~l 224 (469)
T 3pdk_A 175 EGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATSS------LAPYLFADLEADISTM 224 (469)
T ss_dssp HHHHHHHHHHHTTCSS--CCTTCEEEEECTTSTTTT------HHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHhcCc--ccCCCEEEEECCCchHHH------HHHHHHHHcCCEEEEE
Confidence 4556788877776642 345688999998886542 3567788889877654
No 315
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=29.36 E-value=61 Score=28.03 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=34.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCch
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGT 178 (424)
++++.||.++.+-. . + .+...|+.+|.++.++... + +...+|+||+.||-++
T Consensus 2 ~~~i~il~~~~~~~---~--~--~~~~~l~~~g~~~~~~~~~----------~-~~~~~d~lil~Gg~~~ 53 (213)
T 3d54_D 2 KPRACVVVYPGSNC---D--R--DAYHALEINGFEPSYVGLD----------D-KLDDYELIILPGGFSY 53 (213)
T ss_dssp CCEEEEECCTTEEE---H--H--HHHHHHHTTTCEEEEECTT----------C-CCSSCSEEEECEECGG
T ss_pred CcEEEEEEcCCCCc---c--H--HHHHHHHHCCCEEEEEecC----------C-CcccCCEEEECCCCch
Confidence 46888888764321 0 1 3567888889877665432 1 2457999999998654
No 316
>1b4b_A Arginine repressor; core, oligomerization domain, helix TUR; HET: ARG; 2.20A {Geobacillus stearothermophilus} SCOP: d.74.2.1
Probab=29.26 E-value=22 Score=25.84 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=22.0
Q ss_pred EcCChhhHHHHHHHhccCC-CceEEEEcCCchH
Q 014455 148 ETTQQLHAKEIVKVLDLSK-YDGIVCVSGDGIL 179 (424)
Q Consensus 148 ~T~~~~~a~~l~~~~~~~~-~d~vV~vGGDGTl 179 (424)
.-+.||.|.-++..++..+ .+.+-.+.||-|+
T Consensus 18 ikT~pG~A~~va~~iD~~~~~eI~GTIAGDDTI 50 (71)
T 1b4b_A 18 LRTLPGNAHAIGVLLDNLDWDEIVGTICGDDTC 50 (71)
T ss_dssp EEESTTCHHHHHHHHHHHCCTTEEEEEECSSEE
T ss_pred EEeCCCcHHHHHHHHHhCCCCCeEEEEeeCCEE
Confidence 3446888888888877544 3455578888774
No 317
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=29.13 E-value=25 Score=30.31 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCeEEEEEcCChh----hHH-----HHHHHhccCCCceEEEEcCCchH--------HHHHHHhhcCcCccc
Q 014455 132 DVKPLLEDANIQFTVQETTQQL----HAK-----EIVKVLDLSKYDGIVCVSGDGIL--------VEVVNGLLEREDWND 194 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~----~a~-----~l~~~~~~~~~d~vV~vGGDGTl--------~evvngL~~~~~~~~ 194 (424)
....+|+++|+++++.-++... +.. ....+++...||.|++.||-|+- .+.+.....+
T Consensus 26 ~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~----- 100 (177)
T 4hcj_A 26 ESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDN----- 100 (177)
T ss_dssp HHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHh-----
Confidence 3455688888888776543210 000 11233344679999999998863 3333333332
Q ss_pred ccCCcEEEecCCChhhhhh
Q 014455 195 AIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 195 ~~~~plgiiP~GTgN~~Ar 213 (424)
..+++-|=.|. -.+++
T Consensus 101 --~k~iaaIC~g~-~~La~ 116 (177)
T 4hcj_A 101 --QKIVAGIGSGV-VIMAN 116 (177)
T ss_dssp --TCEEEEETTHH-HHHHH
T ss_pred --CCEEEEecccH-HHHHH
Confidence 56787775554 34444
No 318
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=28.90 E-value=2.7e+02 Score=24.35 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T 149 (424)
++..|+|+++|-|+.. ..-.+...|.+.|.++-++..
T Consensus 3 ~~I~v~s~kgGvGKTt--~a~~LA~~la~~g~~VlliD~ 39 (263)
T 1hyq_A 3 RTITVASGKGGTGKTT--ITANLGVALAQLGHDVTIVDA 39 (263)
T ss_dssp EEEEEEESSSCSCHHH--HHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCCHHH--HHHHHHHHHHhCCCcEEEEEC
Confidence 4556666666666654 223455556655655555443
No 319
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.81 E-value=81 Score=24.54 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=33.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEE
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~ 172 (424)
+++++++.. +|-+ .....++++..+++.|+++++..+.... +.+.. +++|.|++
T Consensus 3 mkkIll~Cg--~G~s--TS~l~~k~~~~~~~~gi~~~i~a~~~~~-~~~~~-----~~~Dvil~ 56 (106)
T 1e2b_A 3 KKHIYLFSS--AGMS--TSLLVSKMRAQAEKYEVPVIIEAFPETL-AGEKG-----QNADVVLL 56 (106)
T ss_dssp CEEEEEECS--SSTT--THHHHHHHHHHHHHSCCSEEEEEECSSS-TTHHH-----HHCSEEEE
T ss_pred CcEEEEECC--Cchh--HHHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhc-----cCCCEEEE
Confidence 456777654 2333 3356679999999999999887665543 22222 24775553
No 320
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=28.80 E-value=2.1e+02 Score=22.47 Aligned_cols=89 Identities=7% Similarity=-0.018 Sum_probs=53.5
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (424)
-+.|....|..|......+.+.........-.++.||.-. . +.++..++..++.+.+.. .......++++
T Consensus 28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~-----~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 97 (151)
T 3raz_A 28 IVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDT-----S----DNIGNFLKQTPVSYPIWR-YTGANSRNFMK 97 (151)
T ss_dssp EEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSC-----H----HHHHHHHHHSCCSSCEEE-ECCSCHHHHHH
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-----h----HHHHHHHHHcCCCCceEe-cCccchHHHHH
Confidence 3445556677777777777776655544444556667621 1 356777888887765443 23344556677
Q ss_pred Hhc--cCCCceEEEEcCCchH
Q 014455 161 VLD--LSKYDGIVCVSGDGIL 179 (424)
Q Consensus 161 ~~~--~~~~d~vV~vGGDGTl 179 (424)
... ...+-.++++..||.+
T Consensus 98 ~~~~~v~~~P~~~lid~~G~i 118 (151)
T 3raz_A 98 TYGNTVGVLPFTVVEAPKCGY 118 (151)
T ss_dssp TTTCCSCCSSEEEEEETTTTE
T ss_pred HhCCccCCCCEEEEECCCCcE
Confidence 665 4456667777777753
No 321
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=28.76 E-value=81 Score=27.02 Aligned_cols=46 Identities=15% Similarity=-0.018 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCeEEEE--EcCChhhHHHHHHHhccCCCceEEEEcCCc
Q 014455 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~vV~vGGDG 177 (424)
..+...|++.|+++..+ .........+..+++. +++|.||+.||=|
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~-~~~DlVittGG~g 73 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL-EVSDLVVSSGGLG 73 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH-HHCSEEEEESCCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hcCCEEEEcCCCc
Confidence 36888999999986533 3444454444444443 3599999999977
No 322
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=28.62 E-value=57 Score=30.87 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=37.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..-+.|+-+|-.-.+++.+....-++.+-.++|+.+ +..+.-.+ .++.+.+..-++|.||++|=--.|.
T Consensus 26 ~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~~~~ilp 94 (314)
T 3tqq_A 26 HRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPI--IQPFSLRD-EVEQEKLIAMNADVMVVVAYGLILP 94 (314)
T ss_dssp SEEEEEECCCC----------CCHHHHHHHHTTCCE--ECCSCSSS-HHHHHHHHTTCCSEEEEESCCSCCC
T ss_pred CeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCE--ECcccCCC-HHHHHHHHhcCCCEEEEcCcccccC
Confidence 345677778876555555544457888888899885 33333222 2444555556899999998654443
No 323
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=28.07 E-value=99 Score=31.06 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
...+++.+.+.+.. .+.+-|++.|..|.+. ..+.++|++.|+++...
T Consensus 178 ~~~Yi~~l~~~i~~---~~~lkIvvD~~~Ga~~------~~~~~il~~lG~~v~~~ 224 (485)
T 3uw2_A 178 ADQYVERIVGDIKL---TRPLKLVVDAGNGVAG------PLATRLFKALGCELVEL 224 (485)
T ss_dssp HHHHHHHHHTTCCC---SSCCCEEEECTTSTHH------HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhcCc---ccCCEEEEEcCCCcHH------HHHHHHHHHcCCeEEEe
Confidence 34677777666532 2457899999887653 23567788888876544
No 324
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=27.86 E-value=79 Score=27.37 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=50.6
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHh--cCCeEEEEE------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHH
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQE------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~--ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvn 184 (424)
.+|-+-++|-. +++.|+..|++ .|+++.-+= +.||.-+..+++.+...
T Consensus 25 IaIgsDhaG~~-----lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g------------------- 80 (179)
T 3k7p_A 25 VAIGTDHPAFA-----IHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARK------------------- 80 (179)
T ss_dssp EEEEECTGGGG-----GHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTT-------------------
T ss_pred EEEEECchHHH-----HHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcC-------------------
Confidence 45667777642 34688999999 887664332 23455555555554321
Q ss_pred HhhcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 185 gL~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
....||+=||||++++-+.+.--|+ -.++..|-++-.
T Consensus 81 ------------~~d~GIliCGTGiG~sIaANKv~GIRAAlc~d~~sA~laR~ 121 (179)
T 3k7p_A 81 ------------EVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRI 121 (179)
T ss_dssp ------------SSSEEEEEESSSHHHHHHHHTSTTCCEEECCSHHHHHHHHH
T ss_pred ------------CCCEEEEEccCcHHHhhHhhcCCCeEEEEeCCHHHHHHHHH
Confidence 3457888888888887776532232 225555544433
No 325
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=27.76 E-value=1.6e+02 Score=21.06 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=34.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHh-ccCCCceEE
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIV 171 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~-~~~~~d~vV 171 (424)
+.++.++..|..+.- +.++++|++.+++++.+... +....++.+.. .....-.|+
T Consensus 5 m~~v~~y~~~~C~~C-------~~~~~~L~~~~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 5 MKEIILYTRPNCPYC-------KRARDLLDKKGVKYTDIDAS-TSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp CCCEEEESCSCCTTT-------HHHHHHHHHHTCCEEEECSC-HHHHHHHHHHHHSSCCSCEEE
T ss_pred cceEEEEECCCChhH-------HHHHHHHHHcCCCcEEEECC-HHHHHHHHHHhCCCCCcCEEE
Confidence 446777777766533 35778888889998877666 44445555544 333444554
No 326
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.74 E-value=38 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|..+++++.+.|+++|+..+.
T Consensus 100 ~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 100 SYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp SCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998875
No 327
>1xxa_A ARGR, arginine repressor; complex (DNA binding protein/peptide); HET: ARG; 2.20A {Escherichia coli K12} SCOP: d.74.2.1 PDB: 1xxb_A* 1xxc_A
Probab=27.57 E-value=43 Score=24.72 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=24.8
Q ss_pred EEcCChhhHHHHHHHhccC-CCc-eEEEEcCCchH
Q 014455 147 QETTQQLHAKEIVKVLDLS-KYD-GIVCVSGDGIL 179 (424)
Q Consensus 147 ~~T~~~~~a~~l~~~~~~~-~~d-~vV~vGGDGTl 179 (424)
+.-+.||.|.-++..++.. ..+ .+-++.||-|+
T Consensus 19 VikT~PG~A~~va~~iD~~~~~~~I~GTIAGDDTI 53 (78)
T 1xxa_A 19 VIHTSPGAAQLIARLLDSLGKAEGILGTIAGDDTI 53 (78)
T ss_dssp EEEESTTTHHHHHHHHTTTTTTTTEEEEEECSSEE
T ss_pred EEEeCCCcHHHHHHHHHhcCCCCCeEEEEecCCEE
Confidence 3445689999999998854 555 77788999874
No 328
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=27.54 E-value=90 Score=28.18 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCCCcchhhchH-HHHHHHHHhcCCeEEEEEcCCh-----------------hhHHHHH----------H
Q 014455 109 PKRLYIFVNPFGGKKIASKIFL-DDVKPLLEDANIQFTVQETTQQ-----------------LHAKEIV----------K 160 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~-~~v~~~l~~ag~~~~v~~T~~~-----------------~~a~~l~----------~ 160 (424)
++|++|++-. .|.-.+-..++ -.....|+++|+++++.-.+.. +-..+-. .
T Consensus 23 ~kkV~ill~~-~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~ 101 (242)
T 3l3b_A 23 ALNSAVILAG-CGHMDGSEIREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIE 101 (242)
T ss_dssp -CEEEEECCC-SSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGG
T ss_pred cCEEEEEEec-CCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChH
Confidence 3788888741 11111111121 1334568889998887654321 1111111 1
Q ss_pred HhccCCCceEEEEcCCch
Q 014455 161 VLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGT 178 (424)
+++.+.||+||+.||.|.
T Consensus 102 dv~~~~~D~livPGG~~~ 119 (242)
T 3l3b_A 102 QIRVEEFDMLVIPGGYGV 119 (242)
T ss_dssp GCCGGGCSEEEECCCHHH
T ss_pred HCCcccCCEEEEcCCcch
Confidence 222357999999999885
No 329
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.21 E-value=46 Score=27.09 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|...++++...|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 100 SSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998865
No 330
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=27.20 E-value=52 Score=26.61 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=45.2
Q ss_pred EEEEEcCCCeEEEec------C-CccceeeeeeeeEEEEcCceEEEEEeecCCCcccccC--CCCceEEeeEEeCCCCHH
Q 014455 20 TAMTLTGDGRLRWTD------G-HQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGG--RAGSVVRKDFVFEPLSED 90 (424)
Q Consensus 20 ~~~~l~~~~~l~~~~------~-~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 90 (424)
.-..|+.++...|.. + ...++.+. +|-.++.....-..+.+.+......|++ .+.. .+...|-+.+++
T Consensus 31 r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~-~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~--~k~LdlvA~s~~ 107 (131)
T 1mai_A 31 RFYKLQEDCKTIWQESRKVMRSPESQLFSIE-DIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQ--RNTLDLIAPSPA 107 (131)
T ss_dssp EEEEECTTSSEEEECCCCTTCCTTTTEEEGG-GEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSS--CCCEEEECSSHH
T ss_pred EEEEECCCCCEEEeCCcCCCCCCcCcEEEHh-hhHHHHCCCCCHHHHhhhhcCCccceEEEEECCC--CceEEEEeCCHH
Confidence 344676777777873 1 23445664 7777764321100001111111223332 1121 467788888999
Q ss_pred HHHHHHHHHHHhhhh
Q 014455 91 SKRLWCEKLRDFIDS 105 (424)
Q Consensus 91 ~~~~w~~~~~~~~~~ 105 (424)
+++.|++.|+..+..
T Consensus 108 e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 108 DAQHWVQGLRKIIHH 122 (131)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 331
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=27.10 E-value=38 Score=31.18 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=32.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
.|+|+|++ .|..-. .-...+.+.|+..++++++..+..... ...++++||+||..
T Consensus 3 ~m~~vLiV----~g~~~~--~~a~~l~~aL~~~g~~V~~i~~~~~~~-----~~~~L~~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYC----GDTSLE--TAAGYLAGLMTSWQWEFDYIPSHVGLD-----VGELLAKQDLVILS 57 (259)
T ss_dssp ---CEEEE----ESSCTT--TTHHHHHHHHHHTTCCCEEECTTSCBC-----SSHHHHTCSEEEEE
T ss_pred CCceEEEE----CCCCch--hHHHHHHHHHHhCCceEEEeccccccc-----ChhHHhcCCEEEEc
Confidence 36778877 233111 122467889999999998876654321 01123589999987
No 332
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=27.01 E-value=66 Score=28.01 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH-----HHH-----HHHhccCCCceEEEEcCC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-----KEI-----VKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a-----~~l-----~~~~~~~~~d~vV~vGGD 176 (424)
.+++|+.|++-|.. .... + ......|+.+|+++++.-.+..+.. ..+ ..++....||.|++.||.
T Consensus 7 ~m~~~v~ill~~g~---~~~e-~-~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~ 81 (208)
T 3ot1_A 7 GMSKRILVPVAHGS---EEME-T-VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGV 81 (208)
T ss_dssp --CCEEEEEECTTC---CHHH-H-HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCH
T ss_pred ccCCeEEEEECCCC---cHHH-H-HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCc
Confidence 35678998887632 1222 2 2456788999998887765431110 000 122222479999999997
Q ss_pred chHH---------HHHHHhhcCcCcccccCCcEEEecCCChhhhhh
Q 014455 177 GILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (424)
Q Consensus 177 GTl~---------evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar 213 (424)
+... +.+..... ...+++-|=.|++=-+|+
T Consensus 82 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 82 GGAQAFADSTALLALIDAFSQ-------QGKLVAAICATPALVFAK 120 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-------TTCEEEEETTHHHHTTTT
T ss_pred hHHHHHhhCHHHHHHHHHHHH-------cCCEEEEEChhHHHHHHH
Confidence 5322 22222222 256788777775334444
No 333
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=26.80 E-value=2.1e+02 Score=27.10 Aligned_cols=75 Identities=8% Similarity=0.079 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC---ChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
-+++.+|++-.-|.+ .. +.+...+++.|+.+...... ...+...+..++...+.|+||+.+-......++..
T Consensus 130 w~~vaii~d~~~g~~----~~-~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~q 204 (389)
T 3o21_A 130 WEKFVYLYDTERGFS----VL-QAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQ 204 (389)
T ss_dssp CCEEEEEECSTTCSH----HH-HHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHH----HH-HHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 478998885433322 12 45667788889877655433 22256667777776788888887766566666665
Q ss_pred hhc
Q 014455 186 LLE 188 (424)
Q Consensus 186 L~~ 188 (424)
+.+
T Consensus 205 a~~ 207 (389)
T 3o21_A 205 VVI 207 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 334
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=26.58 E-value=1.4e+02 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.050 Sum_probs=23.9
Q ss_pred CCCcEEEEEEcCCCCC-cchhhchHHHHHHHHHhcCCeEEEEEcCC
Q 014455 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~-~~a~~~~~~~v~~~l~~ag~~~~v~~T~~ 151 (424)
.+++|+++|.+-.... |-+. .+...+...|.+.|+++.++....
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~-~~~~~l~~~L~~~G~~V~v~~~~~ 62 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQ-SHVLQLAEVLRDAGHEVSVLAPAS 62 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHH-HHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCcceEEEEeccCCCCCCcHH-HHHHHHHHHHHHCCCeEEEEecCC
Confidence 4567887776311111 2222 233467788888899888776543
No 335
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=26.54 E-value=1.9e+02 Score=24.30 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=40.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE--EEcCChhhHHHHHHHhc-cCCCceEEEEc--CCchH-----
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLD-LSKYDGIVCVS--GDGIL----- 179 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v--~~T~~~~~a~~l~~~~~-~~~~d~vV~vG--GDGTl----- 179 (424)
.|+.|++-.... .+.. +-....|.++|.+.++ +.....-+.--.++.+. ..+||+||+.| |+-.-
T Consensus 3 ~ri~IV~arfn~----~~Ll-~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va 77 (156)
T 2b99_A 3 KKVGIVDTTFAR----VDMA-SIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCA 77 (156)
T ss_dssp CEEEEEEESSCS----SCCH-HHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHH
T ss_pred cEEEEEEEecch----HHHH-HHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHH
Confidence 367777644443 2234 4566778888865443 33444444434444443 36899999776 44332
Q ss_pred HHHHHHhhc
Q 014455 180 VEVVNGLLE 188 (424)
Q Consensus 180 ~evvngL~~ 188 (424)
+++..||++
T Consensus 78 ~~vs~Gl~~ 86 (156)
T 2b99_A 78 HEASLGLML 86 (156)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345556654
No 336
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=26.50 E-value=54 Score=26.63 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
..|.|...+.+++..|+++|+..+.+.
T Consensus 88 ~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 88 NVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 569999999999999999999998654
No 337
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=26.45 E-value=47 Score=26.18 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=22.0
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.|.|..+++++++.|.++|+.+..
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4699999999999999999988754
No 338
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=26.43 E-value=2.1e+02 Score=22.58 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=52.7
Q ss_pred eEEeCCCCHHHHHHH-HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHH
Q 014455 81 DFVFEPLSEDSKRLW-CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEI 158 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w-~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l 158 (424)
-+.|....|..|..- ...+.+.........-.+|-+|......... . .+.++.+++..++.+.+....... ...++
T Consensus 32 lv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (158)
T 3eyt_A 32 VIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAM-T-PISLKAFLHEYRIKFPVGVDQPGDGAMPRT 109 (158)
T ss_dssp EEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS-C-HHHHHHHHHHTTCCSCEEEECCCSSSSCHH
T ss_pred EEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccC-C-HHHHHHHHHHcCCCceEEEcCccchhhHHH
Confidence 344555667777764 6666666555543333344455332111111 1 246788888888877654433321 11146
Q ss_pred HHHhccCCCceEEEEcCCch
Q 014455 159 VKVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 159 ~~~~~~~~~d~vV~vGGDGT 178 (424)
++.......-.++++..||.
T Consensus 110 ~~~~~v~~~P~~~lid~~G~ 129 (158)
T 3eyt_A 110 MAAYQMRGTPSLLLIDKAGD 129 (158)
T ss_dssp HHHTTCCSSSEEEEECTTSE
T ss_pred HHHcCCCCCCEEEEECCCCC
Confidence 66665566777778877775
No 339
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=26.30 E-value=1.4e+02 Score=31.17 Aligned_cols=42 Identities=21% Similarity=0.261 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
...+...|.+.|..++++....+ ....++|+||+.||-|...
T Consensus 459 ~~~l~~~l~~~G~~v~Vv~~d~~---------~~~~~~DgIIlsGGPg~p~ 500 (645)
T 3r75_A 459 TAMIAQQLSSLGLATEVCGVHDA---------VDLARYDVVVMGPGPGDPS 500 (645)
T ss_dssp HHHHHHHHHHTTCEEEEEETTCC---------CCGGGCSEEEECCCSSCTT
T ss_pred HHHHHHHHHHCCCEEEEEECCCc---------ccccCCCEEEECCCCCChh
Confidence 34678889999999888766543 1234799999999988754
No 340
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=26.27 E-value=1.5e+02 Score=25.39 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.+...|+++|.++.++.. + . +...+|+||+-| =|....
T Consensus 17 ~~~~~l~~~G~~~~~~~~--~-------~--~l~~~d~lil~G-~g~~~~ 54 (200)
T 1ka9_H 17 SAAKALEAAGFSVAVAQD--P-------K--AHEEADLLVLPG-QGHFGQ 54 (200)
T ss_dssp HHHHHHHHTTCEEEEESS--T-------T--SCSSCSEEEECC-CSCHHH
T ss_pred HHHHHHHHCCCeEEEecC--h-------H--HcccCCEEEECC-CCcHHH
Confidence 456778889988776532 1 1 235799999955 344433
No 341
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=26.27 E-value=1.1e+02 Score=27.22 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=48.3
Q ss_pred EEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc--------CChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 114 vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T--------~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
+|.|-++ ..-...+..+.++..|+..|+++.-+=| .+|.-+..+++.+...
T Consensus 7 aigsDha-~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g-------------------- 65 (214)
T 3ono_A 7 ALMMENS-QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSK-------------------- 65 (214)
T ss_dssp EECCCGG-GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTT--------------------
T ss_pred EEECCCc-HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcC--------------------
Confidence 4556666 2111112224899999999987754321 2344444444443321
Q ss_pred hhcCcCcccccCCcEEEecCCChhhhhhhhccccCC----CCCHHHHHHHHH
Q 014455 186 LLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGE----PCKASNAILAVI 233 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~~~~g~----p~~~~~a~~~i~ 233 (424)
...+||+=||||++++-+.+.--|+ -.++..|-.+-.
T Consensus 66 -----------~~d~GIliCGTGiG~siaANKv~GIRAAlc~d~~sA~laR~ 106 (214)
T 3ono_A 66 -----------AVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQ 106 (214)
T ss_dssp -----------SCSEEEEEESSSHHHHHHHHTSTTCCEEECSSHHHHHHHHH
T ss_pred -----------CCCEEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 3567888888888887776532232 225555554443
No 342
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=26.24 E-value=59 Score=27.91 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCeEE-----EEEcCChhhHHHHHHHhccCCC-ceEEEEcCCchH
Q 014455 131 DDVKPLLEDANIQFT-----VQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGIL 179 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~-----v~~T~~~~~a~~l~~~~~~~~~-d~vV~vGGDGTl 179 (424)
+++..+|...-+.++ ++.-+.||.|.-++..++..++ +++-++.||-|+
T Consensus 95 ~~l~~~l~~~v~sv~~~~nlvVikT~PG~A~~vA~~iD~~~~~eIlGTIAGDDTI 149 (170)
T 3lap_A 95 DRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTI 149 (170)
T ss_dssp HHHHHHHHHHCCEEEEETTEEEEECSTTCHHHHHHHHHHHTCTTEEEEEECSSEE
T ss_pred HHHHHHHHHheeEEeecCCEEEEEeCCCcHHHHHHHHHhCCCCCeEEEEecCCEE
Confidence 466777776555543 3455678999999998875444 456688888875
No 343
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=26.15 E-value=98 Score=28.56 Aligned_cols=72 Identities=11% Similarity=0.141 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhc--CCeEEEEEcC----------ChhhHHHHHHHhccCCCceEEE-EcCCc
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGDG 177 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~a--g~~~~v~~T~----------~~~~a~~l~~~~~~~~~d~vV~-vGGDG 177 (424)
+-.-|+.|.|+-.. . .+ +.....++.. |+++.+..+- ....|.++.+.+.....++|+| .||+|
T Consensus 4 ~~I~ivaPSs~~~~-~-~~-~~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 80 (274)
T 3g23_A 4 RRIAICAPSTPFTR-E-DS-ARVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYG 80 (274)
T ss_dssp EEEEEECSSSCCCH-H-HH-HHHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSC
T ss_pred CEEEEEeCCCCCCH-H-HH-HHHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeecccc
Confidence 44558899987543 2 24 3566677764 7666553321 1223455655555567787775 69999
Q ss_pred hHHHHHHHh
Q 014455 178 ILVEVVNGL 186 (424)
Q Consensus 178 Tl~evvngL 186 (424)
+. +++..|
T Consensus 81 a~-rlL~~l 88 (274)
T 3g23_A 81 AN-RIAEDA 88 (274)
T ss_dssp TH-HHHHHH
T ss_pred HH-HHHHhh
Confidence 74 556655
No 344
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=26.14 E-value=1.1e+02 Score=25.77 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=35.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHh-cCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~-ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+++++||+=. ..|...++. +.+...++. .|++++++...... ..++ ..+|.||++.
T Consensus 4 M~kiliiy~S--~~GnT~~~a-~~i~~~l~~~~g~~v~~~~l~~~~-----~~~l--~~aD~ii~gs 60 (188)
T 2ark_A 4 MGKVLVIYDT--RTGNTKKMA-ELVAEGARSLEGTEVRLKHVDEAT-----KEDV--LWADGLAVGS 60 (188)
T ss_dssp CEEEEEEECC--SSSHHHHHH-HHHHHHHHTSTTEEEEEEETTTCC-----HHHH--HHCSEEEEEE
T ss_pred CCEEEEEEEC--CCcHHHHHH-HHHHHHHhhcCCCeEEEEEhhhCC-----HHHH--HhCCEEEEEe
Confidence 5678888754 345555444 678888888 88888877654322 1222 2578877764
No 345
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=25.95 E-value=1.2e+02 Score=28.00 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=24.5
Q ss_pred cCCCceEEEEcCCchH-----HHHHHHhhcCcCcccccCCcEEEecCCCh
Q 014455 164 LSKYDGIVCVSGDGIL-----VEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (424)
Q Consensus 164 ~~~~d~vV~vGGDGTl-----~evvngL~~~~~~~~~~~~plgiiP~GTg 208 (424)
...||+||+.||-|+. ++-+..++++- .....+++-|=.|..
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~---~~~gk~VaaIC~Gp~ 189 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWA---IKNDRFVISLCHGPA 189 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHH---HHTTCEEEEETTGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHH---HHcCCEEEEECccHH
Confidence 3579999999998875 22222222211 012567777766653
No 346
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=25.79 E-value=1.4e+02 Score=28.50 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=45.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHHh
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvngL 186 (424)
.+.+.+.|++ |... .-...++ +.++..+++.|+.+.+..++.... ..+.+...+.|+||+...+ .+++..+
T Consensus 23 ~~s~~Igvv~-~~~~-~f~~~l~-~gi~~~a~~~g~~~~i~~~~~~~~---~i~~l~~~~vDGiIi~~~~---~~~~~~l 93 (412)
T 4fe7_A 23 TKRHRITLLF-NANK-AYDRQVV-EGVGEYLQASQSEWDIFIEEDFRA---RIDKIKDWLGDGVIADFDD---KQIEQAL 93 (412)
T ss_dssp CCCEEEEEEC-CTTS-HHHHHHH-HHHHHHHHHHTCCEEEEECC-CC-----------CCCSEEEEETTC---HHHHHHH
T ss_pred CCCceEEEEe-CCcc-hhhHHHH-HHHHHHHHhcCCCeEEEecCCccc---hhhhHhcCCCCEEEEecCC---hHHHHHH
Confidence 4556788888 5222 1122233 577888888899888877654432 2444555689999984332 3556655
Q ss_pred hcCcCcccccCCcEEEec
Q 014455 187 LEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP 204 (424)
... ++|+-.+-
T Consensus 94 ~~~-------~iPvV~i~ 104 (412)
T 4fe7_A 94 ADV-------DVPIVGVG 104 (412)
T ss_dssp TTC-------CSCEEEEE
T ss_pred hhC-------CCCEEEec
Confidence 443 57776663
No 347
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=25.70 E-value=3.3e+02 Score=23.64 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=47.5
Q ss_pred CcEEEEEEcCC-CC--Ccchh-hchHHHHHHHHHhcCCeEE---EEEcC-ChhhHHHHHHHhcc--CCCceEEEEcCCch
Q 014455 109 PKRLYIFVNPF-GG--KKIAS-KIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL--SKYDGIVCVSGDGI 178 (424)
Q Consensus 109 ~~~~~vivNP~-sG--~~~a~-~~~~~~v~~~l~~ag~~~~---v~~T~-~~~~a~~l~~~~~~--~~~d~vV~vGGDGT 178 (424)
.+++.+|..+. .- ..... ..+ +-.+..++++|+++. +.... ....+.+.++++-. ...|+|+ +..|.+
T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~ 191 (276)
T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERM-AGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQV 191 (276)
T ss_dssp SCEEEEEECCSCCC---CCHHHHHH-HHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHH
T ss_pred CCeEEEEecCcccccccchhHHHHH-HHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHH
Confidence 46888877664 20 12222 223 456777888887643 33332 33445566665532 2467766 678988
Q ss_pred HHHHHHHhhcCc
Q 014455 179 LVEVVNGLLERE 190 (424)
Q Consensus 179 l~evvngL~~~~ 190 (424)
...+++.|.+..
T Consensus 192 a~g~~~al~~~g 203 (276)
T 2h0a_A 192 ALGVLEEAVRLG 203 (276)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHcC
Confidence 889999987663
No 348
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=25.67 E-value=2.5e+02 Score=26.68 Aligned_cols=89 Identities=12% Similarity=0.020 Sum_probs=47.2
Q ss_pred CCCcEEEEEEcCC--CCCcchhhchHHHHHHHHHhcC--CeEEEEEcCCh-hhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 107 GRPKRLYIFVNPF--GGKKIASKIFLDDVKPLLEDAN--IQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 107 ~r~~~~~vivNP~--sG~~~a~~~~~~~v~~~l~~ag--~~~~v~~T~~~-~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
.+..++.+|+ |. .-++=....+ +-++.+.++.| +++.+..+... .+..+..+++..+++|.||+.|.. +.+
T Consensus 24 ~~~~kIglv~-~g~i~D~~f~~~~~-~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~--~~~ 99 (356)
T 3s99_A 24 EEKLKVGFIY-IGPPGDFGWTYQHD-QARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFG--YMD 99 (356)
T ss_dssp --CEEEEEEC-SSCGGGSSHHHHHH-HHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGG--GHH
T ss_pred CCCCEEEEEE-ccCCCchhHHHHHH-HHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHH--HHH
Confidence 3456788777 42 1111112234 35666666677 66555555433 345566777777889988777532 334
Q ss_pred HHHHhhcCcCcccccCCcEEEec
Q 014455 182 VVNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 182 vvngL~~~~~~~~~~~~plgiiP 204 (424)
.+..+...- .++++.++-
T Consensus 100 ~~~~vA~~~-----Pdv~fv~id 117 (356)
T 3s99_A 100 PTVKVAKKF-----PDVKFEHAT 117 (356)
T ss_dssp HHHHHHTTC-----TTSEEEEES
T ss_pred HHHHHHHHC-----CCCEEEEEe
Confidence 444443321 256777663
No 349
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=25.64 E-value=47 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|...++++.+.|+++|++...
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 95 RTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999999988753
No 350
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=25.64 E-value=2e+02 Score=22.62 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=52.9
Q ss_pred eEEeCCCCHHH--HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 81 DFVFEPLSEDS--KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 81 ~~~~~~~~~~~--~~~w~~~~~~~~~~~-~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
-+.|....|.. |..-...+.+..... ....-.+|.||.... . +.++..++..++.+.+. +...+...+
T Consensus 37 ll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~----~----~~~~~~~~~~~~~~~~~-~d~~~~~~~ 107 (150)
T 3fw2_A 37 LINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD----K----QQWKDAIKRDTLDWEQV-CDFGGLNSE 107 (150)
T ss_dssp EEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC----H----HHHHHHHHHTTCCSEEE-CCSCGGGCH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC----H----HHHHHHHHHhCCCceEE-EcCcccchH
Confidence 34455555555 666666666665554 333334555665421 1 35677778888877654 333333346
Q ss_pred HHHHhccCCCceEEEEcCCchH
Q 014455 158 IVKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 158 l~~~~~~~~~d~vV~vGGDGTl 179 (424)
+++.+.....-.++++..||.+
T Consensus 108 ~~~~~~v~~~P~~~lid~~G~i 129 (150)
T 3fw2_A 108 VAKQYSIYKIPANILLSSDGKI 129 (150)
T ss_dssp HHHHTTCCSSSEEEEECTTSBE
T ss_pred HHHHcCCCccCeEEEECCCCEE
Confidence 7777766677788888888863
No 351
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=25.60 E-value=1.4e+02 Score=29.39 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV 146 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v 146 (424)
...+.+.+.+.+...-+.+. -|+++|..|.+.. .+.++|++.|+++..
T Consensus 154 ~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG~~~~------~~~~ll~~lG~~v~~ 201 (443)
T 3i3w_A 154 IDEYIESIYSRFAKFVNYKG-KVVVDCAHGAASH------NFEALLDKFGINYVS 201 (443)
T ss_dssp THHHHHHHHHHHTTTCCCCS-EEEEECTTSTTTT------HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCchhhccCC-eEEEECCCChHHH------HHHHHHHHcCCEEEE
Confidence 35577777777653213345 7899998876532 356678888887654
No 352
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=25.59 E-value=1.9e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 129 FLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 129 ~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
|-++++.+|++.|++++.+.......+.+
T Consensus 35 ~C~~ak~~L~~~gi~~~~~dI~~~~~~~~ 63 (109)
T 3ipz_A 35 FSNTVVQILKNLNVPFEDVNILENEMLRQ 63 (109)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGGCHHHHH
T ss_pred hHHHHHHHHHHcCCCcEEEECCCCHHHHH
Confidence 44688999999999998776543334433
No 353
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=25.54 E-value=1.2e+02 Score=25.52 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=33.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
++++||-|+ | .+. .+...|+++|.++.++. .+ . ....+|+||+-||-++..
T Consensus 1 m~i~vl~~~--g------~~~-~~~~~l~~~G~~~~~~~--~~-------~--~~~~~dglil~GG~~~~~ 51 (186)
T 2ywj_A 1 MIIGVLAIQ--G------DVE-EHEEAIKKAGYEAKKVK--RV-------E--DLEGIDALIIPGGESTAI 51 (186)
T ss_dssp CEEEEECSS--S------CCH-HHHHHHHHTTSEEEEEC--SG-------G--GGTTCSEEEECCSCHHHH
T ss_pred CEEEEEecC--c------chH-HHHHHHHHCCCEEEEEC--Ch-------H--HhccCCEEEECCCCchhh
Confidence 367777663 2 132 34578888898776653 21 1 235789999999987654
No 354
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=25.44 E-value=42 Score=27.32 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=22.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++++.|+++|+..+..
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 95 RIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998753
No 355
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=25.40 E-value=1.7e+02 Score=22.88 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=52.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~ 159 (424)
.-+.|....|..|..-...+.+.........-.+|-||.... . +.++..++..++.+........+...+++
T Consensus 35 vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~----~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 106 (143)
T 4fo5_A 35 TLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEK----E----SIFTETVKIDKLDLSTQFHEGLGKESELY 106 (143)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSC----H----HHHHHHHHHHTCCGGGEEECTTGGGSHHH
T ss_pred EEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCC----H----HHHHHHHHHhCCCCceeeecccccchHHH
Confidence 345566666777777777777766555433334455565321 1 35566677777765222233333334566
Q ss_pred HHhccCCCceEEEEcCCchH
Q 014455 160 KVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 160 ~~~~~~~~d~vV~vGGDGTl 179 (424)
+.......-..+++.-||.+
T Consensus 107 ~~~~v~~~P~~~lid~~G~i 126 (143)
T 4fo5_A 107 KKYDLRKGFKNFLINDEGVI 126 (143)
T ss_dssp HHTTGGGCCCEEEECTTSBE
T ss_pred HHcCCCCCCcEEEECCCCEE
Confidence 66655556677777788864
No 356
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=25.21 E-value=53 Score=28.94 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=32.1
Q ss_pred hHHHHHHHhccCCCceEEEEcCC-chHHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 154 ~a~~l~~~~~~~~~d~vV~vGGD-GTl~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
.|+++++.+...++ .||..||. |....+..|.+... ...+||+|..
T Consensus 41 ~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G------G~viGv~p~~ 87 (199)
T 3qua_A 41 LAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG------GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT------CCEEEEEEGG
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEeCch
Confidence 34566666654443 45556676 99999999988753 5789999974
No 357
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=25.19 E-value=1.4e+02 Score=27.90 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=62.1
Q ss_pred hhhcCCCcEEEEEEcCCCC-------CcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc---CCCce-EE
Q 014455 103 IDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IV 171 (424)
Q Consensus 103 ~~~~~r~~~~~vivNP~sG-------~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~-vV 171 (424)
+.-..+++++.+|||-..= ...+...=.+.+...|+..|+++.++.=-...+..+..+++.. ..+|. |+
T Consensus 62 Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 141 (305)
T 1f1j_A 62 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFAC 141 (305)
T ss_dssp CCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEEE
T ss_pred cccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 4334556778777765411 1122222236899999999999888776666666665555432 24564 33
Q ss_pred EE----------cCCc--hHHHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 172 CV----------SGDG--ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 172 ~v----------GGDG--Tl~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
+. |=|| -+.++.+-+-...-..-..++-|-+|-+=-||.+.+.
T Consensus 142 ~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 196 (305)
T 1f1j_A 142 ILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDG 196 (305)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCC
T ss_pred EEecCCCCCeEEecCCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcccCC
Confidence 33 2344 2445554332211111123566888888777777553
No 358
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=25.13 E-value=49 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.+.|...++++...|+++|+..+.
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 85 RTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5688999999999999999998864
No 359
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=24.78 E-value=42 Score=32.53 Aligned_cols=99 Identities=16% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh-hh---------------------HH---HHHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LH---------------------AK---EIVKV 161 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~-~~---------------------a~---~l~~~ 161 (424)
..++|+.|++-|.. .... + ......|+++|+++++.-.+.. .+ .. .-..+
T Consensus 10 ~~~~kv~ill~dg~---e~~E-~-~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~ 84 (396)
T 3uk7_A 10 ANSRTVLILCGDYM---EDYE-V-MVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDE 84 (396)
T ss_dssp -CCCEEEEECCTTE---EHHH-H-HHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGG
T ss_pred hcCCeEEEEeCCCc---cHHH-H-HHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhh
Confidence 34578888885421 1121 2 2456678899988877654321 00 00 00112
Q ss_pred hccCCCceEEEEcCCchHH----HHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 162 LDLSKYDGIVCVSGDGILV----EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 162 ~~~~~~d~vV~vGGDGTl~----evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
++...||.|++.||.|+-+ +-+..++++- .....+++-|=.|+. .+|+.
T Consensus 85 ~~~~~~D~livpGG~~~~~~~~~~~~~~~l~~~---~~~~~~i~aiC~G~~-~La~a 137 (396)
T 3uk7_A 85 VDLSKYDGLVIPGGRAPEYLALTASVVELVKEF---SRSGKPIASICHGQL-ILAAA 137 (396)
T ss_dssp CCGGGCSEEEECCBSHHHHHTTCHHHHHHHHHH---HHTTCCEEEETTTHH-HHHHT
T ss_pred cCcccCCEEEECCCcchhhcccCHHHHHHHHHH---HHcCCEEEEECchHH-HHHhc
Confidence 2235799999999988642 1111121110 113578888877763 44443
No 360
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=24.77 E-value=1.1e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
+|+.||-+ .+. |. .....|+++|+++.++.. .. + ...+|+||+-||-++..+
T Consensus 2 m~I~il~~--~~~------~~-~~~~~l~~~g~~~~~~~~--~~-------~--l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLGL--QGA------VR-EHIHAIEACGAAGLVVKR--PE-------Q--LNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEECS--SSC------CH-HHHHHHHHTTCEEEEECS--GG-------G--GGGCSEEEECCSCHHHHH
T ss_pred cEEEEEEc--cCC------cH-HHHHHHHHCCCEEEEeCC--hH-------H--HhhCCEEEECCCChhhHH
Confidence 57777765 221 32 334778888987665532 21 2 246999999999877653
No 361
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=24.66 E-value=1.6e+02 Score=26.56 Aligned_cols=95 Identities=15% Similarity=0.169 Sum_probs=51.2
Q ss_pred CCcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC----------hhhHHHHHHHhccCCCceEEEEcC-
Q 014455 108 RPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCVSG- 175 (424)
Q Consensus 108 r~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~vV~vGG- 175 (424)
.++++++|+ .|+.+ +...++. +.+...+++.|++++++.-.. +.+..++.+++. ..|+||++.=
T Consensus 33 ~~mkIliI~GS~r~~-s~t~~La-~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~ 108 (247)
T 2q62_A 33 HRPRILILYGSLRTV-SYSRLLA-EEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPE 108 (247)
T ss_dssp SCCEEEEEECCCCSS-CHHHHHH-HHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEEC
T ss_pred CCCeEEEEEccCCCC-CHHHHHH-HHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCC
Confidence 346777666 44432 3334333 567777888888887654321 233556666654 5788887652
Q ss_pred -CchHHHHHHHhhcCcCc-----ccccCCcEEEecCC
Q 014455 176 -DGILVEVVNGLLEREDW-----NDAIKVPLGVVPAG 206 (424)
Q Consensus 176 -DGTl~evvngL~~~~~~-----~~~~~~plgiiP~G 206 (424)
-|++.-.+..++.+-.. ......|.+++-.+
T Consensus 109 Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 109 RHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp SSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred CCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 34444555444443211 01234566666553
No 362
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=24.60 E-value=3.7e+02 Score=25.26 Aligned_cols=61 Identities=13% Similarity=0.099 Sum_probs=33.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
+.+++++++-. ..|...++. +.+...+.+.+++++++.-... +..++..++ ..+|.||++.
T Consensus 255 ~~~k~~i~~~S--~~gnT~~la-~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~l--~~~d~iiigs 315 (404)
T 2ohh_A 255 VDERVTVIYDT--MHGSTRKMA-HAIAEGAMSEGVDVRVYCLHED-DRSEIVKDI--LESGAIALGA 315 (404)
T ss_dssp CCSEEEEEECC--SSSHHHHHH-HHHHHHHHTTTCEEEEEETTTS-CHHHHHHHH--HTCSEEEEEC
T ss_pred CCCcEEEEEEC--CChHHHHHH-HHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH--HHCCEEEEEC
Confidence 34566666633 344445433 5677777777777766654332 233444444 3577777663
No 363
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=24.51 E-value=85 Score=25.35 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=31.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++++|++=-. .|.+.++ .+.+...|...+++++++... ...+...+|.||++.
T Consensus 2 ~ki~I~Y~S~--tGnT~~~-A~~ia~~l~~~g~~v~~~~~~---------~~~~l~~~d~vi~g~ 54 (147)
T 2hna_A 2 ADITLISGST--LGGAEYV-AEHLAEKLEEAGFTTETLHGP---------LLEDLPASGIWLVIS 54 (147)
T ss_dssp CSEEEECCTT--SCCCHHH-HHHHHHHHHHTTCCEEEECCT---------TSCSSCSEEEEEEEC
T ss_pred CeEEEEEECC--chHHHHH-HHHHHHHHHHCCCceEEecCC---------CHHHcccCCeEEEEE
Confidence 4678888544 4555543 368888888888877665321 011234677777654
No 364
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=24.41 E-value=2.1e+02 Score=20.88 Aligned_cols=47 Identities=15% Similarity=0.321 Sum_probs=28.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
+++.|+.-|..+..+..+.- ++++.+|+..+++++.+.......+.+
T Consensus 2 ~~v~ly~~~~C~~c~~~~~~-~~ak~~L~~~~i~~~~~di~~~~~~~~ 48 (93)
T 1t1v_A 2 SGLRVYSTSVTGSREIKSQQ-SEVTRILDGKRIQYQLVDISQDNALRD 48 (93)
T ss_dssp CCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCCEEEETTSCHHHHH
T ss_pred CCEEEEEcCCCCCchhhHHH-HHHHHHHHHCCCceEEEECCCCHHHHH
Confidence 35666666666544222111 477889999999998776554334443
No 365
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.40 E-value=1.1e+02 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHhc-----CCeEEE--EEcCChhhHHHHHHHhcc-CCCceEEEEcCCc-----hHHHHHHHhhcC
Q 014455 132 DVKPLLEDA-----NIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDG-----ILVEVVNGLLER 189 (424)
Q Consensus 132 ~v~~~l~~a-----g~~~~v--~~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDG-----Tl~evvngL~~~ 189 (424)
.+..+|+.. |+++.. +.....+...+..+++.. .++|.||+.||=| -..|++..++++
T Consensus 29 ~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~~a~~~~~~~ 99 (167)
T 1uuy_A 29 RAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGFTPRDVTPEATKKVIER 99 (167)
T ss_dssp HHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCSE
T ss_pred HHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHHhcC
Confidence 456677766 776542 334444444454444432 4799999999976 356777777643
No 366
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=24.37 E-value=1.5e+02 Score=27.34 Aligned_cols=96 Identities=14% Similarity=0.206 Sum_probs=51.3
Q ss_pred CCCcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC-----------ChhhHHHHHHHhccCCCceEEEEc
Q 014455 107 GRPKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----------QQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 107 ~r~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~-----------~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
..++|+++|+ .|+. .+...++. +.+...+++.|++++++.-. .+.+..++.+++. ..|+||++.
T Consensus 56 ~~~mKILiI~GS~R~-~S~T~~La-~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aS 131 (279)
T 2fzv_A 56 APPVRILLLYGSLRA-RSFSRLAV-EEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCS 131 (279)
T ss_dssp CSCCEEEEEESCCSS-SCHHHHHH-HHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEE
T ss_pred CCCCEEEEEEeCCCC-CCHHHHHH-HHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEc
Confidence 3467887777 4443 23344333 56777788888888765432 1233556666654 578888765
Q ss_pred C--CchHHHHHHHhhcCcCc-----ccccCCcEEEecCC
Q 014455 175 G--DGILVEVVNGLLEREDW-----NDAIKVPLGVVPAG 206 (424)
Q Consensus 175 G--DGTl~evvngL~~~~~~-----~~~~~~plgiiP~G 206 (424)
= -|++.-++..++.+-.. ......|.+++-.+
T Consensus 132 P~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 132 PERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp EEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred CccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 2 33344444443332110 01134566666653
No 367
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=24.33 E-value=1.2e+02 Score=25.32 Aligned_cols=43 Identities=2% Similarity=0.084 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEE
Q 014455 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 130 ~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~v 173 (424)
++.++....+.|++++.+.+.+.++..+...++. +++|.||+-
T Consensus 33 ~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiIN 75 (146)
T 1h05_A 33 VALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVILN 75 (146)
T ss_dssp HHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 3556666677899999999999999888877764 347777643
No 368
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=24.24 E-value=67 Score=26.14 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=22.6
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
.|.|...++++.+.|+++|.......
T Consensus 87 ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 87 TVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred eEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 48899999999999999999887644
No 369
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.97 E-value=2.4e+02 Score=21.60 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~ 157 (424)
+.+++.|+.-|..+..+..+.- ++++.+|+..+++|+.+.-.....+.+
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~-~~ak~~L~~~gi~y~~vdI~~~~~~~~ 54 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQ-QDVVRFLEANKIEFEEVDITMSEEQRQ 54 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCEEEEETTTCHHHHH
T ss_pred CccEEEEEEcCCCCCcccchhH-HHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 3456778877777654432222 378899999999998776544333333
No 370
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=23.96 E-value=2.1e+02 Score=22.17 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=27.4
Q ss_pred HHHHHHHhccCCCceEEEE-cCC----chHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 155 AKEIVKVLDLSKYDGIVCV-SGD----GILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 155 a~~l~~~~~~~~~d~vV~v-GGD----GTl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
+.++.+.+ .++-+++++. +|| |+..+++..+.+. .+++=+||+
T Consensus 69 ~~~i~~~~-~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~-------gi~v~viPG 116 (117)
T 3hh1_A 69 VRQVIELL-EEGSDVALVTDAGTPAISDPGYTMASAAHAA-------GLPVVPVPG 116 (117)
T ss_dssp HHHHHHHH-HTTCCEEEEEETTSCGGGSTTHHHHHHHHHT-------TCCEEEEC-
T ss_pred HHHHHHHH-HCCCeEEEEecCCcCeEeccHHHHHHHHHHC-------CCcEEEeCC
Confidence 34444444 3567888888 899 4556666665443 578888885
No 371
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=23.84 E-value=1e+02 Score=25.83 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=41.7
Q ss_pred EEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE-------cCChhhHHHHHHHhccCCCceEEEEcCCchHHHHHHH
Q 014455 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-------TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (424)
Q Consensus 113 ~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~-------T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~evvng 185 (424)
.+|-+-++|- .+++.++..|++.|+++.-+= +.+|.-+..+++.+.
T Consensus 10 I~igsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~---------------------- 62 (148)
T 4em8_A 10 VFLSSDHAGV-----ELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS---------------------- 62 (148)
T ss_dssp EEEEECGGGH-----HHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB----------------------
T ss_pred EEEEECchhH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH----------------------
Confidence 4455666653 244689999999998775432 234555555544432
Q ss_pred hhcCcCcccccCCcEEEecCCChhhhhhhhc
Q 014455 186 LLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (424)
Q Consensus 186 L~~~~~~~~~~~~plgiiP~GTgN~~Ar~l~ 216 (424)
....||+=||||++++-+.+
T Consensus 63 -----------~~d~GIliCGTGiG~siaAN 82 (148)
T 4em8_A 63 -----------DTSFGVLICGTGIGMSIAAN 82 (148)
T ss_dssp -----------TTBEEEEEESSSHHHHHHHT
T ss_pred -----------HhCeEEEEccCcHHHHHHHh
Confidence 23468888888888877764
No 372
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=23.83 E-value=2.3e+02 Score=24.34 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=32.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHHH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~e 181 (424)
..+.++.||- .+| .+. .+...|+.+|+++.++. ... ++ ..+|+||+-||..+..+
T Consensus 18 ~~~~~I~ii~--~~~------~~~-~~~~~l~~~g~~~~~~~--~~~-------~l--~~~d~iil~GG~~~~~~ 72 (208)
T 2iss_D 18 GSHMKIGVLG--VQG------DVR-EHVEALHKLGVETLIVK--LPE-------QL--DMVDGLILPGGESTTMI 72 (208)
T ss_dssp --CCEEEEEC--SSS------CHH-HHHHHHHHTTCEEEEEC--SGG-------GG--GGCSEEEECSSCHHHHH
T ss_pred CCCcEEEEEE--CCC------chH-HHHHHHHHCCCEEEEeC--ChH-------HH--hhCCEEEECCCcHHHHH
Confidence 3456777772 333 242 45566777888766543 221 22 46999999999766553
No 373
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=23.67 E-value=2e+02 Score=22.96 Aligned_cols=64 Identities=14% Similarity=0.100 Sum_probs=45.0
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhcc-CCCceEEEEcCCch
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI 178 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDGT 178 (424)
-+.|+++|..-.. ..+ ++|..=+++.|+.+.+......+++.+++.+++. ++-.+=|.+..+||
T Consensus 7 aI~i~~~~~~~~~---~~l-~~vl~GIEEEGip~~v~~~~~~~d~~~lA~~AA~~S~lgVGIGi~~~G~ 71 (117)
T 1nbw_B 7 GVRLFYDPRGHHA---GAI-NELCWGLEEQGVPCQTITYDGGGDAAALGALAARSSPLRVGIGLSASGE 71 (117)
T ss_dssp CEEEEECTTSCCH---HHH-HHHHHHHHHTTCCEEEEECTTCCCHHHHHHHHHHHCTTSEEEEECTTSE
T ss_pred EEEEEeCCCCCCH---HHH-HHHHhhhhhcCCCeEEEEeCCCCCHHHHHHHHHHhCCCceEEEECCCCC
Confidence 4677776555322 245 5788888999999999776655788888877653 45556677888876
No 374
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=23.64 E-value=1.5e+02 Score=21.31 Aligned_cols=36 Identities=8% Similarity=0.056 Sum_probs=25.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT 150 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~ 150 (424)
.++++.|+..|..+. -++++++|++.+++++.+...
T Consensus 10 ~M~~v~ly~~~~Cp~-------C~~~~~~L~~~gi~~~~~~v~ 45 (92)
T 3ic4_A 10 GMAEVLMYGLSTCPH-------CKRTLEFLKREGVDFEVIWID 45 (92)
T ss_dssp TCSSSEEEECTTCHH-------HHHHHHHHHHHTCCCEEEEGG
T ss_pred CCceEEEEECCCChH-------HHHHHHHHHHcCCCcEEEEee
Confidence 345678887886653 246788899999998877655
No 375
>2x9a_A Attachment protein G3P; transmembrane, phage infection, phage recognition, HOST-VIRU interaction, virion; 2.47A {Enterobacteria phage IF1} PDB: 2x9b_A
Probab=23.57 E-value=24 Score=25.04 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=10.4
Q ss_pred ceEEEEcCCchH
Q 014455 168 DGIVCVSGDGIL 179 (424)
Q Consensus 168 d~vV~vGGDGTl 179 (424)
.+|++++||||+
T Consensus 39 tGViVg~~dgtv 50 (65)
T 2x9a_A 39 SGIGIGYDNDTS 50 (65)
T ss_dssp EEEEEEETTTTE
T ss_pred eeEEEECCCCCE
Confidence 479999999985
No 376
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=23.31 E-value=2.8e+02 Score=21.93 Aligned_cols=43 Identities=16% Similarity=0.014 Sum_probs=25.2
Q ss_pred HHHHHHHhcCC-eEEEEEcCChhhHHHHHHH-hccCCCceEEEEc
Q 014455 132 DVKPLLEDANI-QFTVQETTQQLHAKEIVKV-LDLSKYDGIVCVS 174 (424)
Q Consensus 132 ~v~~~l~~ag~-~~~v~~T~~~~~a~~l~~~-~~~~~~d~vV~vG 174 (424)
.+...++..|+ .++........-+.++.+. +...++|.||+..
T Consensus 83 ~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~ 127 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGA 127 (156)
T ss_dssp HHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEET
T ss_pred HHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECC
Confidence 44555667787 3665544423445566666 5555788877653
No 377
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=23.25 E-value=77 Score=26.93 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=29.9
Q ss_pred CcEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCC-------------hhhHHHHHHHhccCCCceEEEE
Q 014455 109 PKRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-------------QLHAKEIVKVLDLSKYDGIVCV 173 (424)
Q Consensus 109 ~~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~-------------~~~a~~l~~~~~~~~~d~vV~v 173 (424)
++++++|+ .|+.+ +...++. +.+...++ .|.+++++.... +.+..++.+++. .+|+||++
T Consensus 6 ~Mkilii~gS~r~~-g~t~~la-~~i~~~l~-~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~--~aD~ii~~ 79 (193)
T 1rtt_A 6 DIKVLGISGSLRSG-SYNSAAL-QEAIGLVP-PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIR--AADALLFA 79 (193)
T ss_dssp -CEEEEEESCCSTT-CHHHHHH-HHHHTTCC-TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHH--HCSEEEEE
T ss_pred CceEEEEECCCCCC-ChHHHHH-HHHHHhcc-CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHH--hCCEEEEE
Confidence 35676666 45433 3444333 45555555 567777654322 133444444443 46776654
No 378
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=23.17 E-value=1.3e+02 Score=25.32 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=42.5
Q ss_pred cEEEEEEcCCCC---Ccch-------hhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcC
Q 014455 110 KRLYIFVNPFGG---KKIA-------SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (424)
Q Consensus 110 ~~~~vivNP~sG---~~~a-------~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGG 175 (424)
++++||-=|.-+ ++.. ....++.++....+.|++++.+.+.+.++..+...++. +++|+||+--|
T Consensus 7 m~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~-~~~dgiIINpg 81 (156)
T 1gtz_A 7 APIMILNGPNLNLLGQAQPEIYGSDTLADVEALCVKAAAAHGGTVDFRQSNHEGELVDWIHEAR-LNHCGIVINPA 81 (156)
T ss_dssp SCEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHH-HHCSEEEEECT
T ss_pred ceEEEEeCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEECch
Confidence 357777767653 2221 11233455556666789999999999999888887764 35777775443
No 379
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=23.16 E-value=1.2e+02 Score=30.21 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC--eEEEEEcCC------------hhhHH
Q 014455 92 KRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI--QFTVQETTQ------------QLHAK 156 (424)
Q Consensus 92 ~~~w~~~~~~~~~~-~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~--~~~v~~T~~------------~~~a~ 156 (424)
...+.+.+.+.+.. .-+.+.+-|++.|..|.+.. .+.++|++.|. ++.....+. +.++.
T Consensus 157 ~~~Y~~~l~~~~~~~~i~~~~lkivvd~~nG~~~~------~~~~~l~~lG~~~~v~~~~~~pDg~Fp~~~p~p~~~~~~ 230 (464)
T 1tuo_A 157 REAYFEALKAHLDLKALSGFSGVLYHDSMGGAGAG------FLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLG 230 (464)
T ss_dssp HHHHHHHHHTTSCHHHHTTCCSCEEEECTTSTTTT------HHHHHHHHTTCCCCEEEESCSCCTTGGGSCSCCSGGGCH
T ss_pred HHHHHHHHhhhcChhhccccCCEEEEECCCCcHHH------HHHHHHHHCCCCceEEEEecccCCCCCCCCcCCCchhHH
Confidence 45677777766532 11224677899998876642 34567888888 655443221 13456
Q ss_pred HHHHHhc-cCCCceEEEEcCCc
Q 014455 157 EIVKVLD-LSKYDGIVCVSGDG 177 (424)
Q Consensus 157 ~l~~~~~-~~~~d~vV~vGGDG 177 (424)
++++... ..+.|..++.=|||
T Consensus 231 ~l~~~v~~~~~adlgia~DgDa 252 (464)
T 1tuo_A 231 VTLAVLGPETPPSFAVATDGDA 252 (464)
T ss_dssp HHHHHHTTCCTTCEEEEECTTS
T ss_pred HHHHHHHhccCCCEEEEECCCC
Confidence 6666665 45555555555544
No 380
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=23.16 E-value=4.3e+02 Score=24.45 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~-r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (424)
+.++...+.+++.+... . +|.-..|++ |...+.+.|.+.-....++.|+.+..+. +..+.+..+..++
T Consensus 11 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 86 (285)
T 3l07_A 11 SLSKDLKERLATQVQEYKHHTAITPKLVAIIV----GNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQ 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555556665544322 2 344344444 4444556777777888999999887665 3345566666677
Q ss_pred hccC-CCceEEEEc---CCchHHHHHHHhhcC
Q 014455 162 LDLS-KYDGIVCVS---GDGILVEVVNGLLER 189 (424)
Q Consensus 162 ~~~~-~~d~vV~vG---GDGTl~evvngL~~~ 189 (424)
+..+ ..++|++== +-=--..+++.+--.
T Consensus 87 lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~ 118 (285)
T 3l07_A 87 LNNDSSVHAILVQLPLPAHINKNNVIYSIKPE 118 (285)
T ss_dssp HHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG
T ss_pred HhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc
Confidence 6543 455555321 111115566666443
No 381
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=22.97 E-value=91 Score=29.48 Aligned_cols=69 Identities=13% Similarity=-0.039 Sum_probs=41.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl~ 180 (424)
..-+.|+-+|-.-.|++.+....-++.+-.++|+.+. ..+...+. +..+.+...++|.||++|=--.|.
T Consensus 28 ~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~--~~~~~~~~-~~~~~l~~~~~Dliv~~~y~~ilp 96 (317)
T 3rfo_A 28 YDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVL--QPLRIREK-DEYEKVLALEPDLIVTAAFGQIVP 96 (317)
T ss_dssp CEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEE--CCSCTTSH-HHHHHHHHHCCSEEEESSCCSCCC
T ss_pred CcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEE--ccccCCCH-HHHHHHHhcCCCEEEEcCchhhCC
Confidence 4557788899775555555554578888888998853 33322221 223334334789999887444443
No 382
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=22.93 E-value=1.9e+02 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=23.9
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhc--CCeEEEEEc
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQET 149 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~a--g~~~~v~~T 149 (424)
+++++|. .|+..++...++. +.+...++++ |.+++++.-
T Consensus 2 mkiLii~gSpr~~~s~t~~l~-~~~~~~~~~~~~g~~v~~~dL 43 (212)
T 3r6w_A 2 SRILAVHASPRGERSQSRRLA-EVFLAAYREAHPQARVARREV 43 (212)
T ss_dssp CCEEEEECCSCSTTCHHHHHH-HHHHHHHHHHCTTCCEEEEES
T ss_pred CEEEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCCCeEEEEEC
Confidence 4566555 6665334444443 5777778777 788876654
No 383
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=22.89 E-value=52 Score=28.07 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=47.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHh-cCCeEEEEEcCChh----hHHHH-----HHHhccCCCceEEEEcCCchH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQL----HAKEI-----VKVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~-ag~~~~v~~T~~~~----~a~~l-----~~~~~~~~~d~vV~vGGDGTl 179 (424)
+++.|++-|..- ... + ......|+. .++++++.-.+... +...+ ..++....||.|++.||.|.-
T Consensus 2 ~~i~ill~~g~~---~~e-~-~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~ 76 (188)
T 2fex_A 2 TRIAIALAQDFA---DWE-P-ALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE 76 (188)
T ss_dssp CEEEEECCTTBC---TTS-S-HHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH
T ss_pred cEEEEEeCCCch---HHH-H-HHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc
Confidence 577777765322 111 2 134566777 78887766543210 00000 112222379999999998642
Q ss_pred -------HHHHHHhhcCcCcccccCCcEEEecCCChhhhhhh
Q 014455 180 -------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (424)
Q Consensus 180 -------~evvngL~~~~~~~~~~~~plgiiP~GTgN~~Ar~ 214 (424)
.+.+..... ...+++-|=.|+. .+|+.
T Consensus 77 ~~~~~~l~~~l~~~~~-------~~k~i~aiC~G~~-~La~a 110 (188)
T 2fex_A 77 KGTAADLGGLVKRFRD-------RDRLVAGICAAAS-ALGGT 110 (188)
T ss_dssp HTCCCCCHHHHHHHHH-------TTCEEEEETHHHH-HHHHT
T ss_pred ccccHHHHHHHHHHHH-------CCCEEEEECHHHH-HHHHC
Confidence 122222222 2567777777764 45543
No 384
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.85 E-value=1.4e+02 Score=25.32 Aligned_cols=57 Identities=12% Similarity=0.101 Sum_probs=34.0
Q ss_pred HHHHHHH---hcCCeEEE-EEcCChhhHHHHHHHhcc-CCCceEEEEcCCc-----hHHHHHHHhhc
Q 014455 132 DVKPLLE---DANIQFTV-QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDG-----ILVEVVNGLLE 188 (424)
Q Consensus 132 ~v~~~l~---~ag~~~~v-~~T~~~~~a~~l~~~~~~-~~~d~vV~vGGDG-----Tl~evvngL~~ 188 (424)
.+..+|+ +.|+++.. +.....+...+..+++.. .++|.||+.||=| ...|++..+..
T Consensus 29 ~l~~~l~~l~~~G~~v~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~~ 95 (178)
T 2pbq_A 29 AIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAPRDVTPEATEAVCE 95 (178)
T ss_dssp HHHHHHHHHBCSCCEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCchHHHHHHHhC
Confidence 5677777 78987732 223333344444444432 2799999999965 24555555544
No 385
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=22.76 E-value=1.8e+02 Score=19.60 Aligned_cols=35 Identities=11% Similarity=0.281 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCCh
Q 014455 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (424)
Q Consensus 111 ~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~ 152 (424)
++.++..|..+. -+.++++|++.+++++.+.....
T Consensus 2 ~i~~y~~~~C~~-------C~~~~~~l~~~~i~~~~~di~~~ 36 (75)
T 1r7h_A 2 SITLYTKPACVQ-------CTATKKALDRAGLAYNTVDISLD 36 (75)
T ss_dssp CEEEEECTTCHH-------HHHHHHHHHHTTCCCEEEETTTC
T ss_pred eEEEEeCCCChH-------HHHHHHHHHHcCCCcEEEECCCC
Confidence 355666665542 24677888888998887765543
No 386
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=22.70 E-value=1.4e+02 Score=25.30 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=53.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC-eEEEEEcCChhhHHHHHHHhccCCCceEEEEc----CCch----
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS----GDGI---- 178 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~-~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG----GDGT---- 178 (424)
.+.|+.|+.-..--. -..+.. +-....|.++|. +++++.....-+.--.++.+.. +||+||+.| |+=.
T Consensus 16 ~~~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~-~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 16 SGVRLAIVASSWHGK-ICDALL-DGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR-NHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp TTCCEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT-SCSEEEEEEEEECCSSTHHHH
T ss_pred CCCEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh-cCCEEEEEeeeecCCchHHHH
Confidence 345677776443321 112233 345667777887 6677766666666666666653 699999888 5443
Q ss_pred -HHHHHHHhhcCcCcccccCCcEEEecCC
Q 014455 179 -LVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 179 -l~evvngL~~~~~~~~~~~~plgiiP~G 206 (424)
-+++..||++-.- +....+-.|+|-..
T Consensus 93 Va~~vs~Gl~~v~L-~~~vPV~~GVLT~~ 120 (160)
T 2c92_A 93 VCDAVTQGLTRVSL-DSSTPIANGVLTTN 120 (160)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHh-hcCCCEEEEEcCCC
Confidence 3456677765321 11123344555554
No 387
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=22.59 E-value=2e+02 Score=25.94 Aligned_cols=67 Identities=7% Similarity=0.015 Sum_probs=39.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCC----eEEE--EEcCC-hhhHHHHHHHhccCCCceEEEEcCC
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI----QFTV--QETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~----~~~v--~~T~~-~~~a~~l~~~~~~~~~d~vV~vGGD 176 (424)
.+.+.+.||. ..++.. -..+ .+-++..+++.|+ ++.+ .-|++ +....++++.+...++|+||+.|.+
T Consensus 6 ~~t~~IGvi~-~~~~p~-~~~~-~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~ 79 (302)
T 2qh8_A 6 AKTAKVAVSQ-IVEHPA-LDAT-RQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATP 79 (302)
T ss_dssp -CCEEEEEEE-SSCCHH-HHHH-HHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESHH
T ss_pred cCCcEEEEEE-eccChh-HHHH-HHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECChH
Confidence 3556777763 222211 1223 3578888999998 5444 44443 3344566777766789999988643
No 388
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=22.59 E-value=41 Score=26.70 Aligned_cols=26 Identities=12% Similarity=0.178 Sum_probs=21.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...+.++++.|+++|++....
T Consensus 95 ~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 95 PPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred ceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45788889999999999999988643
No 389
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=22.48 E-value=1.5e+02 Score=23.08 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=32.1
Q ss_pred EEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc
Q 014455 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (424)
Q Consensus 112 ~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG 174 (424)
++|++- |..|+..++. +.+...+...|++++++...... . .++ ..+|.||++.
T Consensus 2 i~iiy~--S~tGnT~~~a-~~i~~~l~~~g~~v~~~~~~~~~-~----~~l--~~~d~vi~g~ 54 (137)
T 2fz5_A 2 VEIVYW--SGTGNTEAMA-NEIEAAVKAAGADVESVRFEDTN-V----DDV--ASKDVILLGC 54 (137)
T ss_dssp EEEEEC--CSSSHHHHHH-HHHHHHHHHTTCCEEEEETTSCC-H----HHH--HTCSEEEEEC
T ss_pred EEEEEE--CCCChHHHHH-HHHHHHHHhCCCeEEEEEcccCC-H----HHH--hcCCEEEEEc
Confidence 455654 3445555544 68888888888888877544321 1 122 3678877764
No 390
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=22.45 E-value=1.6e+02 Score=24.08 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=41.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc---CCchHHHHHHHh
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG---GDGTl~evvngL 186 (424)
++++|++--.. |.+.++- +.|...| |. ++++.-.... . .+ ...+|.||++. |+|.+...+..+
T Consensus 2 ~k~~I~Y~S~t--GnT~~~A-~~ia~~l---g~-~~~~~~~~~~-~----~~--l~~~d~ii~g~pt~~~g~~p~~~~~f 67 (164)
T 2bmv_A 2 GKIGIFFGTDS--GNAEAIA-EKISKAI---GN-AEVVDVAKAS-K----EQ--FNSFTKVILVAPTAGAGDLQTDWEDF 67 (164)
T ss_dssp CCEEEEECCSS--SHHHHHH-HHHHHHH---CS-EEEEEGGGCC-H----HH--HTTCSEEEEEEEEETTTEECHHHHHH
T ss_pred CeEEEEEECCC--chHHHHH-HHHHHHc---CC-cEEEecccCC-H----hH--HhhCCEEEEEECCcCCCcCcHHHHHH
Confidence 56888886544 4555433 4666655 44 5555433211 1 12 24688877654 677655544444
Q ss_pred hcCcCcccccCCcEEEecCC
Q 014455 187 LEREDWNDAIKVPLGVVPAG 206 (424)
Q Consensus 187 ~~~~~~~~~~~~plgiiP~G 206 (424)
+..-........+++++-.|
T Consensus 68 ~~~l~~~~l~~k~~avf~~G 87 (164)
T 2bmv_A 68 LGTLEASDFANKTIGLVGLG 87 (164)
T ss_dssp HTTCCTHHHHTSEEEEEEEC
T ss_pred HHHHhhhhcCCCEEEEEEeC
Confidence 43211001124566655444
No 391
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=22.26 E-value=2.7e+02 Score=23.09 Aligned_cols=56 Identities=18% Similarity=0.098 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEcCCchH----HHHHHHhhc
Q 014455 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL----VEVVNGLLE 188 (424)
Q Consensus 131 ~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vGGDGTl----~evvngL~~ 188 (424)
..+..+|+.+|+++. .....-...++++.+...++|.|.+..=+++- .+++..|-+
T Consensus 36 ~~va~~l~~~G~eVi--~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 36 KVVARALRDAGFEVV--YTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp HHHHHHHHHTTCEEE--CCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEE--ECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 467888999997654 33322334456666555689999888877653 344444433
No 392
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.21 E-value=4.1e+02 Score=23.44 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEE---EEEcC-ChhhHHHHHHHhcc--CCCceEEEEcCCchHHHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDL--SKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~---v~~T~-~~~~a~~l~~~~~~--~~~d~vV~vGGDGTl~ev 182 (424)
.+++.+|..|..+.......+ +-.+..|+++|+++. +.... ....+.+.++++-. ..+|+|+ +..|.+.-.+
T Consensus 133 ~~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~ 210 (289)
T 2fep_A 133 HTDIAFVSGPMAEPINRSKKL-QGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAIL-SATDEMALGI 210 (289)
T ss_dssp CSSEEEEESCTTSHHHHTTHH-HHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHH
T ss_pred CCeEEEEeCCccccccHHHHH-HHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEE-ECCHHHHHHH
Confidence 467888776641222222223 456777888887653 33333 34455666666533 2466666 5678888888
Q ss_pred HHHhhcC
Q 014455 183 VNGLLER 189 (424)
Q Consensus 183 vngL~~~ 189 (424)
++.|.+.
T Consensus 211 ~~al~~~ 217 (289)
T 2fep_A 211 IHAAQDQ 217 (289)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888765
No 393
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=22.17 E-value=66 Score=28.31 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=23.0
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~ 105 (424)
+.+.|...++++++.|+++|+..+..
T Consensus 184 r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 184 RIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999998764
No 394
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=22.11 E-value=1.1e+02 Score=26.62 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=21.6
Q ss_pred cEEEEEE-cCCCCCcchhhchHHHHHHHHHhcCCeEEEEE
Q 014455 110 KRLYIFV-NPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (424)
Q Consensus 110 ~~~~viv-NP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~ 148 (424)
++++||. .|..++. .+.+.+...+++.+.+++++.
T Consensus 2 mkiLiI~gsp~~~~s----~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 2 PKTLIILAHPNISQS----TVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp CCEEEEECCTTGGGC----SHHHHHHHHHTTCTTTEEEEE
T ss_pred CEEEEEEeCCCccHH----HHHHHHHHHHHhCCCeEEEEE
Confidence 4566555 6665431 244566677777787777654
No 395
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=22.09 E-value=1.9e+02 Score=24.20 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEEE-cCCCCCcchhhchHHHHHHHHHhc------CCeEEEEE
Q 014455 111 RLYIFV-NPFGGKKIASKIFLDDVKPLLEDA------NIQFTVQE 148 (424)
Q Consensus 111 ~~~viv-NP~sG~~~a~~~~~~~v~~~l~~a------g~~~~v~~ 148 (424)
++++|+ .|+.+ +...++. +.+...++++ |.+++++.
T Consensus 2 kilii~gS~r~~-~~t~~la-~~~~~~l~~~~~~~~~g~~v~~~d 44 (191)
T 1t0i_A 2 KVGIIMGSVRAK-RVCPEIA-AYVKRTIENSEELIDQKLKIQVVD 44 (191)
T ss_dssp EEEEEECCCCSS-CSHHHHH-HHHHHHHHTCTTTTTTTCEEEEEC
T ss_pred eEEEEeCCCCCC-CchHHHH-HHHHHHHHHhhccCCCCceEEEEe
Confidence 555555 45533 3444443 5677777765 67777653
No 396
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.02 E-value=80 Score=27.19 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=26.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcC
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT 150 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~ 150 (424)
++++++||+=.. .+...++. +.+...+++.|.+++++...
T Consensus 5 ~mmkilii~~S~--~g~T~~la-~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 5 APVKLAIVFYSS--TGTGYAMA-QEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp CCCEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEECC
T ss_pred CCCeEEEEEECC--CChHHHHH-HHHHHHHhcCCCEEEEEecc
Confidence 467888777433 34455444 57888888888888876543
No 397
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=21.94 E-value=2.2e+02 Score=22.67 Aligned_cols=85 Identities=13% Similarity=0.072 Sum_probs=48.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~ 159 (424)
.-+.|....|..|......+.+.........-.++-+|... . ++..++..++.+.+..... .+++
T Consensus 44 vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~---~--------~~~~~~~~~~~~~~~~d~~----~~~~ 108 (158)
T 3hdc_A 44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK---R--------FPEKYRRAPVSFNFLSDAT----GQVQ 108 (158)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS---S--------CCGGGGGCCCSCEEEECTT----SHHH
T ss_pred EEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH---H--------HHHHHHHcCCCceEEECch----HHHH
Confidence 34455566677788777777777666553344455556544 1 1122344566665544332 2455
Q ss_pred HHhccCCCceEEEEcCCchH
Q 014455 160 KVLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 160 ~~~~~~~~d~vV~vGGDGTl 179 (424)
+......+-.++++..||.+
T Consensus 109 ~~~~v~~~P~~~lid~~G~i 128 (158)
T 3hdc_A 109 QRYGANRLPDTFIVDRKGII 128 (158)
T ss_dssp HHTTCCSSSEEEEECTTSBE
T ss_pred HHhCCCCcceEEEEcCCCCE
Confidence 66655566677777777753
No 398
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=21.88 E-value=1.3e+02 Score=27.29 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCeEEEEEcCChhhHHHHHHHhccCCCceEEEEc-CCc-----hHHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDG-----ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 132 ~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~vV~vG-GDG-----Tl~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
++...+...+++++........-+..+.+.+...++|.||+.. |.+ .+..+...++.+ ...|+-++|.
T Consensus 77 ~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~------~~~PVlvv~~ 150 (319)
T 3olq_A 77 QQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRK------CPAPVWMVKD 150 (319)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHH------CSSCEEEEES
T ss_pred HHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhc------CCCCEEEecC
Confidence 3344455678887765542223445566655445688776542 222 144555666654 3789999998
Q ss_pred CChh
Q 014455 206 GTGN 209 (424)
Q Consensus 206 GTgN 209 (424)
+...
T Consensus 151 ~~~~ 154 (319)
T 3olq_A 151 KEWP 154 (319)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7644
No 399
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=21.84 E-value=1e+02 Score=25.63 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=29.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (424)
++..|++.-..++..+.+ ...+...|+..+..+++..-+.++|..+.++
T Consensus 2 mptIl~lHGf~ss~~s~k--~~~l~~~~~~~~~~~~v~~pdl~~~g~~~~~ 50 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAK--ATTFKSWLQQHHPHIEMQIPQLPPYPAEAAE 50 (202)
T ss_dssp -CEEEEECCTTCCTTCHH--HHHHHHHHHHHCTTSEEECCCCCSSHHHHHH
T ss_pred CcEEEEeCCCCCCCCccH--HHHHHHHHHHcCCCcEEEEeCCCCCHHHHHH
Confidence 344566655444433332 1357788888887777777777777655443
No 400
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=21.82 E-value=2.7e+02 Score=22.95 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=48.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHH
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~ 159 (424)
.-+.|....|..|......+.+.........-.++.+|...........- +.++.+++..++.+.+...... +++
T Consensus 49 vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~-~~~~~~~~~~~~~~~~~~d~~~----~~~ 123 (196)
T 2ywi_A 49 TVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSP-ENMKKVAEELGYPFPYLYDETQ----EVA 123 (196)
T ss_dssp EEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSH-HHHHHHHHHHTCCSCEEECSSC----HHH
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCH-HHHHHHHHHcCCCceEEECCch----HHH
Confidence 34455566677777666666665544322112334444433221111112 4567777777777665543322 344
Q ss_pred HHhccCCCceEEEEcCCch
Q 014455 160 KVLDLSKYDGIVCVSGDGI 178 (424)
Q Consensus 160 ~~~~~~~~d~vV~vGGDGT 178 (424)
+.+.....-.++++..||.
T Consensus 124 ~~~~v~~~P~~~lid~~G~ 142 (196)
T 2ywi_A 124 KAYDAACTPDFYIFDRDLK 142 (196)
T ss_dssp HHHTCCEESEEEEEETTCB
T ss_pred HHhCCCCCCeEEEEcCCCe
Confidence 5544444556677777774
No 401
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=21.36 E-value=4.6e+02 Score=23.78 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHhhhh--cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChh-hHHHHHHHhccCCCceEE
Q 014455 95 WCEKLRDFIDS--FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIV 171 (424)
Q Consensus 95 w~~~~~~~~~~--~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~vV 171 (424)
-...|+..+.. ..++.++++|.+++.|-|+.. ....+...|.+.|.++-++...-.. .... .+...
T Consensus 75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt--va~nLA~~lA~~G~rVLLID~D~~~~~l~~---~~~~~------ 143 (286)
T 3la6_A 75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTF--VCANLAAVISQTNKRVLLIDCDMRKGYTHE---LLGTN------ 143 (286)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHH--HHHHHHHHHHTTTCCEEEEECCTTTCCHHH---HHTCC------
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHH--HHHHHHHHHHhCCCCEEEEeccCCCCCHHH---HhCCC------
Confidence 34455555432 345668999999999999875 3346888898889888777765542 2222 22211
Q ss_pred EEcCCchHHHHHHHhhcCcCcccc-cCCcEEEecCCCh
Q 014455 172 CVSGDGILVEVVNGLLEREDWNDA-IKVPLGVVPAGTG 208 (424)
Q Consensus 172 ~vGGDGTl~evvngL~~~~~~~~~-~~~plgiiP~GTg 208 (424)
.+-.+.+++.+-..-.+.... ...-+-+||+|..
T Consensus 144 ---~~~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~ 178 (286)
T 3la6_A 144 ---NVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQV 178 (286)
T ss_dssp ---CTTCHHHHHHTSSCTTTTCEECSSTTEEEECCCSC
T ss_pred ---CCCCHHHHccCCCCHHHheeccCCCCEEEEeCCCC
Confidence 134566776653221111000 1245899999975
No 402
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=21.23 E-value=1.6e+02 Score=24.69 Aligned_cols=38 Identities=5% Similarity=0.113 Sum_probs=25.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T 149 (424)
+++++||+=.. .+...++. +.+...+.+.|++++++..
T Consensus 5 M~kilii~~S~--~g~T~~la-~~i~~~l~~~g~~v~~~~l 42 (200)
T 2a5l_A 5 SPYILVLYYSR--HGATAEMA-RQIARGVEQGGFEARVRTV 42 (200)
T ss_dssp CCEEEEEECCS--SSHHHHHH-HHHHHHHHHTTCEEEEEBC
T ss_pred cceEEEEEeCC--CChHHHHH-HHHHHHHhhCCCEEEEEEh
Confidence 45788777543 34555444 5788888888888876644
No 403
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=21.16 E-value=89 Score=26.51 Aligned_cols=37 Identities=5% Similarity=0.121 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEc
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T 149 (424)
+++++||+-. .+...++. +.+...+++.|++++++..
T Consensus 4 mmkilii~~S---~g~T~~la-~~i~~~l~~~g~~v~~~~l 40 (199)
T 2zki_A 4 KPNILVLFYG---YGSIVELA-KEIGKGAEEAGAEVKIRRV 40 (199)
T ss_dssp CCEEEEEECC---SSHHHHHH-HHHHHHHHHHSCEEEEEEC
T ss_pred CcEEEEEEeC---ccHHHHHH-HHHHHHHHhCCCEEEEEeh
Confidence 4678877755 44555444 6788888888888877654
No 404
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=21.10 E-value=1.1e+02 Score=28.85 Aligned_cols=65 Identities=17% Similarity=0.266 Sum_probs=35.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhH-H----HH-------HHHhccCCCceEEEEc
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-K----EI-------VKVLDLSKYDGIVCVS 174 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a-~----~l-------~~~~~~~~~d~vV~vG 174 (424)
-||.|+. |+|=.-.++ .++.++..+|.....++++..-.-..|. . +. ..+...++||++|+-|
T Consensus 33 irplkI~-ILnlmp~k~----~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG 107 (301)
T 2vdj_A 33 IRALKIA-ILNLMPTKQ----ETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITG 107 (301)
T ss_dssp SCCEEEE-EECCCSSHH----HHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECC
T ss_pred CCCceEE-EEeCCCCcC----chHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECC
Confidence 4677776 556433322 3556788888877766655322211121 1 11 1222346899999999
Q ss_pred CC
Q 014455 175 GD 176 (424)
Q Consensus 175 GD 176 (424)
|=
T Consensus 108 ap 109 (301)
T 2vdj_A 108 AP 109 (301)
T ss_dssp CT
T ss_pred CC
Confidence 85
No 405
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=21.09 E-value=3e+02 Score=22.52 Aligned_cols=93 Identities=12% Similarity=0.094 Sum_probs=49.0
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHH
Q 014455 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (424)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (424)
-+.|....|..|......+.+........ -.+|.+|............ +.++.+++..++.+.+..-.. .++++
T Consensus 37 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~-~~~~~~~~~~~~~~~~~~d~~----~~~~~ 110 (188)
T 2cvb_A 37 AVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAP-EKMAAFAEEHGIFFPYLLDET----QEVAK 110 (188)
T ss_dssp EEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSH-HHHHHHHHHHTCCSCEEECSS----SHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCH-HHHHHHHHHhCCCceEEECCc----chHHH
Confidence 34455555666666556666655544332 3344455433221111112 467777888887766554322 23555
Q ss_pred HhccCCCceEEEEcCCchH
Q 014455 161 VLDLSKYDGIVCVSGDGIL 179 (424)
Q Consensus 161 ~~~~~~~d~vV~vGGDGTl 179 (424)
.+.....-.++++..||.+
T Consensus 111 ~~~v~~~P~~~lid~~G~i 129 (188)
T 2cvb_A 111 AYRALRTPEVFLFDERRLL 129 (188)
T ss_dssp HTTCCEESEEEEECTTCBE
T ss_pred HcCCCCCCeEEEECCCCcE
Confidence 5544455567778888753
No 406
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=21.03 E-value=3.5e+02 Score=24.76 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=58.9
Q ss_pred cCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc----cCCCceEEE---------
Q 014455 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDGIVC--------- 172 (424)
Q Consensus 106 ~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~----~~~~d~vV~--------- 172 (424)
..+|+.+.+|+|-.. .. . +.+...|+..|+++.++.--...+..+..+++. ...+|.+||
T Consensus 39 ~~~~rG~~LIinn~~--~D----~-~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~g 111 (272)
T 3h11_A 39 KSKPLGICLIIDCIG--NE----T-ELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGSQ 111 (272)
T ss_dssp CCSSSEEEEEEESSC--CC----C-SHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEETT
T ss_pred CCCcceEEEEECCch--HH----H-HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCCC
Confidence 356778888888542 11 2 468899999999988877666666666665543 235665543
Q ss_pred --EcCCch-----HHHHHHHhhcCcCcccccCCcEEEecC
Q 014455 173 --VSGDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (424)
Q Consensus 173 --vGGDGT-----l~evvngL~~~~~~~~~~~~plgiiP~ 205 (424)
.|=||. +.++.+-+-...-..-..++-|=+|-+
T Consensus 112 ~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQA 151 (272)
T 3h11_A 112 SVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQN 151 (272)
T ss_dssp EECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEE
T ss_pred eEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEEC
Confidence 455885 888888775532111223556777776
No 407
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=21.01 E-value=59 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=21.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~ 104 (424)
+.|.|...++++...|+++|+..+.
T Consensus 87 r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 87 CECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4699999999999999999988753
No 408
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=20.97 E-value=1.8e+02 Score=24.39 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=25.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHHHHHHHHh-cCCeEEEEEcC
Q 014455 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETT 150 (424)
Q Consensus 110 ~~~~vivNP~sG~~~a~~~~~~~v~~~l~~-ag~~~~v~~T~ 150 (424)
++++||+-.. .+...++. +.+...+++ .|++++++.-.
T Consensus 2 mkilii~~S~--~g~t~~la-~~i~~~l~~~~g~~v~~~~l~ 40 (198)
T 3b6i_A 2 AKVLVLYYSM--YGHIETMA-RAVAEGASKVDGAEVVVKRVP 40 (198)
T ss_dssp CEEEEEECCS--SSHHHHHH-HHHHHHHHTSTTCEEEEEECC
T ss_pred CeEEEEEeCC--CcHHHHHH-HHHHHHHhhcCCCEEEEEEcc
Confidence 5777777543 44555444 678888887 88888876543
No 409
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=20.92 E-value=5e+02 Score=24.00 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhc----CC-CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEE---cCChhhHHHHHHH
Q 014455 90 DSKRLWCEKLRDFIDSF----GR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (424)
Q Consensus 90 ~~~~~w~~~~~~~~~~~----~r-~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (424)
+.++...+.+++.+... .+ |.-..|++ |...+.+.|.+.-....++.|++++.+. +....+..+..++
T Consensus 12 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 87 (286)
T 4a5o_A 12 AIAANLRQQIAQRVTERRQQGLRVPGLAVILV----GTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDR 87 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34555556665544322 34 44444444 3444556677777888999999887654 3445566666677
Q ss_pred hccC-CCceEEE
Q 014455 162 LDLS-KYDGIVC 172 (424)
Q Consensus 162 ~~~~-~~d~vV~ 172 (424)
+..+ ..|+|++
T Consensus 88 lN~d~~v~GIlV 99 (286)
T 4a5o_A 88 LNDDPAIDGILV 99 (286)
T ss_dssp HHTCTTCCEEEE
T ss_pred HhCCCCCCEEEE
Confidence 7643 5666664
No 410
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=20.88 E-value=58 Score=27.57 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 014455 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (424)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~~~~~~~~~ 106 (424)
+.+.|..+++++.+.|+++|+..+...
T Consensus 108 rt~yl~A~s~~E~~eWi~aI~~~i~~n 134 (169)
T 1btk_A 108 GPLYVFSPTEELRKRWIHQLKNVIRYN 134 (169)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHHHC
Confidence 467788889999999999999998643
No 411
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=20.80 E-value=3e+02 Score=21.38 Aligned_cols=84 Identities=14% Similarity=0.088 Sum_probs=44.1
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHHHHHHHhc
Q 014455 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (424)
Q Consensus 84 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (424)
|....|..|......+.+.........-.++.++..... . +.++.+++..++.+.+...... ++++.+.
T Consensus 35 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~---~----~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~ 103 (153)
T 2l5o_A 35 FWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDP---I----ESVRQYVKDYGLPFTVMYDADK----AVGQAFG 103 (153)
T ss_dssp EECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSC---H----HHHHHHHHHTTCCSEEEECSSC----HHHHHHT
T ss_pred EECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCC---H----HHHHHHHHHcCCCceEEcCchH----HHHHHcC
Confidence 333444445555555555443332222233444432111 1 3566777778887766554332 4555555
Q ss_pred cCCCceEEEEcCCch
Q 014455 164 LSKYDGIVCVSGDGI 178 (424)
Q Consensus 164 ~~~~d~vV~vGGDGT 178 (424)
...+-.++++..||.
T Consensus 104 i~~~P~~~lid~~G~ 118 (153)
T 2l5o_A 104 TQVYPTSVLIGKKGE 118 (153)
T ss_dssp CCSSSEEEEECSSSC
T ss_pred CCccCeEEEECCCCc
Confidence 556677778777774
No 412
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=20.78 E-value=3.3e+02 Score=25.16 Aligned_cols=87 Identities=11% Similarity=0.088 Sum_probs=47.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchH---HHHHHHHHhcCCeEEEEEcCChh--hHHHHHHHhccCCCceEEEEcCCchHHHH
Q 014455 108 RPKRLYIFVNPFGGKKIASKIFL---DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (424)
Q Consensus 108 r~~~~~vivNP~sG~~~a~~~~~---~~v~~~l~~ag~~~~v~~T~~~~--~a~~l~~~~~~~~~d~vV~vGGDGTl~ev 182 (424)
+.+.+.||+.......-....|. +.++..++ |+.+.++.+.... ...++.+.+...+.|+||+++-+.. .+.
T Consensus 67 ~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~--g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~ 143 (366)
T 3h5t_A 67 RAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG--DTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG-DPH 143 (366)
T ss_dssp -CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS--SCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT-CHH
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHh--hCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC-hHH
Confidence 44567777754322111111222 23444443 7777777665433 2455666666678999999976433 245
Q ss_pred HHHhhcCcCcccccCCcEEEec
Q 014455 183 VNGLLEREDWNDAIKVPLGVVP 204 (424)
Q Consensus 183 vngL~~~~~~~~~~~~plgiiP 204 (424)
+..|... .+|+-++-
T Consensus 144 ~~~l~~~-------~iPvV~i~ 158 (366)
T 3h5t_A 144 IDAIRAR-------GLPAVIAD 158 (366)
T ss_dssp HHHHHHH-------TCCEEEES
T ss_pred HHHHHHC-------CCCEEEEC
Confidence 5555433 57776663
No 413
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=20.60 E-value=1.8e+02 Score=26.43 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=34.4
Q ss_pred CCCceEEEEcCC----chHHHHHHHhhcCcCcccccCCcEEEecCCCh-hhhhhhhccccCCCC
Q 014455 165 SKYDGIVCVSGD----GILVEVVNGLLEREDWNDAIKVPLGVVPAGTG-NGMIKSLLDLVGEPC 223 (424)
Q Consensus 165 ~~~d~vV~vGGD----GTl~evvngL~~~~~~~~~~~~plgiiP~GTg-N~~Ar~l~~~~g~p~ 223 (424)
++-+++++.+|| |+..+++..|... .+++=+||+=|. ...+..+ |+|.
T Consensus 75 ~G~~Va~L~~GDP~iyg~~~~l~~~l~~~-------gi~veviPGiSs~~aaaA~l----G~pl 127 (264)
T 3ndc_A 75 AGQDVARLHSGDLSIWSAMGEQLRRLRAL-------NIPYDVTPGVPSFAAAAATL----GAEL 127 (264)
T ss_dssp HTCCEEEEESBCTTSSCSHHHHHHHHHHT-------TCCEEEECCCCHHHHHHHHH----TCCS
T ss_pred CCCeEEEEeCCCCccccHHHHHHHHHHhC-------CCCEEEeCCHHHHHHHHHHh----CCCc
Confidence 467889999999 6677777777543 689999998776 4444444 5554
No 414
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=20.59 E-value=2.8e+02 Score=24.85 Aligned_cols=70 Identities=11% Similarity=0.021 Sum_probs=41.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcC-CeEEEEEcCChhhHHHHH----HHhccCCCceEE-EEcCCchH
Q 014455 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQQLHAKEIV----KVLDLSKYDGIV-CVSGDGIL 179 (424)
Q Consensus 107 ~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag-~~~~v~~T~~~~~a~~l~----~~~~~~~~d~vV-~vGGDGTl 179 (424)
.+..++++ ++|.....++.+.+ +.++.++...+ ++++++..+. .+..+.+ +.+.....+.+| +.||-.++
T Consensus 32 ~~~d~ViL-v~~~~~~~~~~~A~-~~i~~~l~~~~~i~~e~~~vd~-~df~~~v~~i~~~i~~~~~~iivnlsGG~Ril 107 (244)
T 2wte_A 32 QKEDSLVI-VVPSPIVSGTRAAI-ESLRAQISRLNYPPPRIYEIEI-TDFNLALSKILDIILTLPEPIISDLTMGMRMI 107 (244)
T ss_dssp CTTSEEEE-EEESSCCHHHHHHH-HHHHHHHHHHTCCCEEEEEECC-CSHHHHHHHHHHHHTTSCSSEEEECSSSCHHH
T ss_pred CCCCEEEE-EeCCCcchhHHHHH-HHHHHHHHHcCCCceEEEEECC-ccHHHHHHHHHHHHhhcCCcEEEEecCCchHH
Confidence 34556655 44554445566555 58899998886 4788777654 3333333 333222226666 77888875
No 415
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=20.36 E-value=11 Score=34.96 Aligned_cols=27 Identities=22% Similarity=0.139 Sum_probs=15.9
Q ss_pred cCCChhhhhhhhccccCCCCCHHHHHH
Q 014455 204 PAGTGNGMIKSLLDLVGEPCKASNAIL 230 (424)
Q Consensus 204 P~GTgN~~Ar~l~~~~g~p~~~~~a~~ 230 (424)
+.|+|..|+-.+........++.+|+.
T Consensus 221 t~GaGD~f~a~~~~~l~~g~~~~~A~~ 247 (289)
T 3pzs_A 221 PVGVGDLTSGLLLVNLLKGEPLDKALE 247 (289)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 689999998876432212224555443
No 416
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=20.09 E-value=2.3e+02 Score=21.16 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEEEcCChhhHH
Q 014455 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK 156 (424)
Q Consensus 109 ~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~~T~~~~~a~ 156 (424)
+.++.|+.-|.-+ +-++++++|++.+++++.+.......+.
T Consensus 15 ~~~v~vy~~~~Cp-------~C~~ak~~L~~~~i~y~~idI~~~~~~~ 55 (99)
T 3qmx_A 15 SAKIEIYTWSTCP-------FCMRALALLKRKGVEFQEYCIDGDNEAR 55 (99)
T ss_dssp CCCEEEEECTTCH-------HHHHHHHHHHHHTCCCEEEECTTCHHHH
T ss_pred CCCEEEEEcCCCh-------hHHHHHHHHHHCCCCCEEEEcCCCHHHH
Confidence 4567777666553 3357788889899988876654433333
No 417
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=20.06 E-value=1.8e+02 Score=28.78 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHHHHHHHHhcCCeEEEE
Q 014455 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (424)
Q Consensus 92 ~~~w~~~~~~~~~~~~r~~~~~vivNP~sG~~~a~~~~~~~v~~~l~~ag~~~~v~ 147 (424)
...+.+.+.+.+.. .+.+-|++.|..|.+.. .+.++|++.|+++...
T Consensus 156 ~~~Y~~~l~~~~~~---~~~lkivvD~~nG~~~~------~~~~ll~~lG~~v~~~ 202 (463)
T 1p5d_X 156 LPRYFKQIRDDIAM---AKPMKVVVDCGNGVAGV------IAPQLIEALGCSVIPL 202 (463)
T ss_dssp HHHHHHHHHTTCCC---SSCEEEEEECTTSGGGG------THHHHHHHHHEEEEEE
T ss_pred HHHHHHHHHhhhcc---cCCCEEEEECCCCcHHH------HHHHHHHHcCCeEEEE
Confidence 34566666665421 15688999998876642 2455666667665443
Done!