BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014457
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 42/181 (23%)
Query: 80 ENTALEVTGVDRPGLMSEISAVLYEL------GCHVPAAVAWTHKTRAACIFYIEDG--- 130
++ A E GVDR SEI+ LY+L H A+ + + + G
Sbjct: 95 QDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ 154
Query: 131 --------LEGRPIT-------APEMLAHVEEQLEIVVGAHHGEGETRSVRLTTP----- 170
++ RP+ +PE +A + EI AH TR++ P
Sbjct: 155 NLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAH-----TRAMEKCRPGMFEY 209
Query: 171 -MPGRTHTERRLHQLMYADRDYELCRGCDGGAGHW--NGCTRTH----VLIDS-CKEKGY 222
+ G H E H Y + + G +G H+ N C VLID+ C+ KGY
Sbjct: 210 HLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGY 269
Query: 223 S 223
+
Sbjct: 270 A 270
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 308 QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELL 362
++ G L ++ F G+++S E G+ F+ +DA GH + R + L
Sbjct: 210 EDHPGALXEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGHATDSRVADAL 264
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 41/180 (22%)
Query: 80 ENTALEVTGVDRPGLMSEISAVLYEL------GCHVPAAVAWTHKTRAACIFYIEDG--- 130
++ A E GVDR SEI+ LY+L H A+ + + + G
Sbjct: 95 QDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ 154
Query: 131 --------LEGRPIT-------APEMLAHVEEQLEIVVGAHHGEGETRSVRLTTP----- 170
++ RP+ +PE +A + EI AH TR++ P
Sbjct: 155 NLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAH-----TRAMEKCRPGMFEY 209
Query: 171 -MPGRTHTERRLHQLMYADRDYELCRGCDGGAGHW--NGCTRTH---VLIDS-CKEKGYS 223
+ G H E H Y + + G +G H+ N C VLID+ C+ KGY+
Sbjct: 210 HLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYA 269
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 41/180 (22%)
Query: 80 ENTALEVTGVDRPGLMSEISAVLYEL------GCHVPAAVAWTHKTRAACIFYIEDG--- 130
++ A E GVDR SEI+ LY+L H A+ + + + G
Sbjct: 95 QDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQ 154
Query: 131 --------LEGRPIT-------APEMLAHVEEQLEIVVGAHHGEGETRSVRLTTP----- 170
++ RP+ +PE +A + EI AH TR++ P
Sbjct: 155 NLTAPATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAH-----TRAMEKCRPGMFEY 209
Query: 171 -MPGRTHTERRLHQLMYADRDYELCRGCDGGAGHW--NGCTRTH---VLIDS-CKEKGYS 223
+ G H E H Y + + G +G H+ N C VLID+ C+ KGY+
Sbjct: 210 HLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYA 269
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,897,087
Number of Sequences: 62578
Number of extensions: 469416
Number of successful extensions: 970
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 9
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)