BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014457
(424 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 28/174 (16%)
Query: 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTE 279
G + V I C DRP L + A+ + + + A I +S +A + + + DG L +
Sbjct: 697 GGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTELDGSLLKFD 756
Query: 280 SQR-------QKLTQCLIAAIERRVSHGLR--------------------LEICTQNRMG 312
+R L + ++ +H L+ +E+ T ++ G
Sbjct: 757 RRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEMELFTLDKAG 816
Query: 313 LLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366
LL+DV+ F E LS+ A+I T GEKA F + +A G +++R + L +++
Sbjct: 817 LLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTNAKGEALSERERQSLSEKL 870
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 11 VISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC--ASRRGGGASNEVQKCL 68
+I ++ GW +D + V D +G +E + I+QA+ + RG ++ L
Sbjct: 754 IIDARIHTTRNGWAIDNYLVQDPVGQPFAEERQLARIEQAIADAIANRGELVPKLAKRPL 813
Query: 69 KR------DVRPR-----HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
K+ DVRPR S T +EV DR L++ + L+E V +A +
Sbjct: 814 KQTRAGAFDVRPRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAY 873
Query: 118 KTRAACIFYIEDGLEGRPIT 137
RAA FY+ D L G IT
Sbjct: 874 GERAADTFYVTD-LTGAKIT 892
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 66/170 (38%), Gaps = 33/170 (19%)
Query: 218 KEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTL 276
+E+G ++V + D P L + + + A I +++ +A Y ++ G
Sbjct: 722 EERGATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPF 781
Query: 277 DTESQRQKLTQCLIAAIERR-------VSHGLR-------------------------LE 304
E Q ++ Q + AI R L+ +E
Sbjct: 782 AEERQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIE 841
Query: 305 ICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDV 354
+ ++R LL+ + RA EN + V A I GE+A +FYV D +G +
Sbjct: 842 VNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDLTGAKI 891
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 3 QVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC 52
+ L + ++++ ++I++ G D F+VTD G K+TDE+ + I+QAL
Sbjct: 856 RALFENQVIVQSAHITAYGERAADTFYVTDLTGAKITDESRMDTIRQALL 905
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
S +T +EV+G+DRPGL+ +++A + +L ++ +A T RA +FY+ D L R IT
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-IT 904
Query: 138 APEMLAHVEEQL 149
AP A ++ L
Sbjct: 905 APTRQAAIKRAL 916
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
+ ++ L L I+ +++++ G DVF+VTD LG ++T T I++AL GGA
Sbjct: 866 LTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRALIHLLANGGA 925
Query: 61 SNE 63
+ +
Sbjct: 926 AEQ 928
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL +T A + L+++ A + T GE+A FYV D G + T
Sbjct: 852 IEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPT 907
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEKGY---SVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ + + + I D+ T+ A+ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
+ DG ++ QR K LT+ L A I+RRV L+
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + R F E +S+ A+I T GE+ F++ DA ++
Sbjct: 811 QRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADNQPLS 869
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 2 VQVLTDLELVISKSYISSDGGWF-MDVFHVTDQLGNKLTDETL-ILYIQQALC-ASRRGG 58
V + L L I + I + F +D + V D G + D + I+ L A R
Sbjct: 722 VAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPE 781
Query: 59 GASNEVQKCLKRDVR----PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
+Q+ + R ++ P V+ N T LE+T DRPGL++ I + E
Sbjct: 782 DYPAIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDIS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
+ A T R +F+I D + +P++ P++ + ++E +
Sbjct: 842 LQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQEAI 881
>sp|Q5WVX6|GLND_LEGPL [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Lens) GN=glnD PE=3 SV=1
Length = 861
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
I I+ +H +L + T +R GLL+ ++R F + + A+I T GE+ FY+ +
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835
Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
+G+ +N +LK+++ +L ++KS
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEV-QKCLKRDVRPR 75
I+ D + +D + + D+ +E IQ++LC G V ++ L R +
Sbjct: 711 ITCDNQFDLDTYIILDENNQAFLNEQRARDIQKSLCDHLANTGRLPAVSRRRLSRALTHF 770
Query: 76 HVSTE----------NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIF 125
+V T+ T L + DRPGL++ IS V L H+ A T R +F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 126 YIED 129
YI +
Sbjct: 831 YISN 834
>sp|A5ICM0|GLND_LEGPC [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Corby) GN=glnD PE=3 SV=1
Length = 861
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
I I+ +H +L + T +R GLL+ ++R F + + A+I T GE+ FY+ +
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835
Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
+G+ +N +LK+++ +L ++KS
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEV-QKCLKRDVRPR 75
I+ D + +D + + D+ +E IQ+ LC G V ++ L R +
Sbjct: 711 ITCDNQFDLDTYIILDENNQAFLNEQRARDIQKNLCDHLANTGRLPAVSRRRLSRALTHF 770
Query: 76 HVSTE----------NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIF 125
+V T+ T L + DRPGL++ IS V L H+ A T R +F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 126 YIED 129
YI +
Sbjct: 831 YISN 834
>sp|Q5X4J1|GLND_LEGPA [Protein-PII] uridylyltransferase OS=Legionella pneumophila (strain
Paris) GN=glnD PE=3 SV=1
Length = 861
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
I I+ +H +L + T +R GLL+ ++R F + + A+I T GE+ FY+ +
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835
Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
+G+ +N +LK+++ +L ++KS
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEV-QKCLKRDVRPR 75
I+ D + +D + + D+ +E IQ++LC G V ++ L R +
Sbjct: 711 ITCDNQFDLDTYIILDENNQAFLNEQRARDIQKSLCDHLANTGRLPAVSRRRLSRALTHF 770
Query: 76 HVSTE----------NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIF 125
+V T+ T L + DRPGL++ IS V L H+ A T R +F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 126 YIED 129
YI +
Sbjct: 831 YISN 834
>sp|Q5ZUS2|GLND_LEGPH [Protein-PII] uridylyltransferase OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=glnD PE=3 SV=1
Length = 861
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 290 IAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349
I I+ +H +L + T +R GLL+ ++R F + + A+I T GE+ FY+ +
Sbjct: 776 INFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMFYISNQ 835
Query: 350 SGHDVNQRTVELLKQEIGGSVLVVNKSS 377
+G+ +N +LK+++ +L ++KS
Sbjct: 836 TGYSLNHEEKTILKEKL---ILEISKSK 860
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEV-QKCLKRDVRPR 75
I+ D + +D + + D+ +E IQ++LC G V ++ L R +
Sbjct: 711 ITCDNQFDLDTYIILDENNQAFLNEQRARDIQKSLCDHLANTGRLPAVSRRRLSRALTHF 770
Query: 76 HVSTE----------NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIF 125
+V T+ T L + DRPGL++ IS V L H+ A T R +F
Sbjct: 771 NVKTQINFIDDNTNHQTQLFLVTNDRPGLLATISRVFLTLNIHLHNAKIATAGERVEDMF 830
Query: 126 YIED 129
YI +
Sbjct: 831 YISN 834
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
S +T +EV+G+DRPGL+ +++ + +L ++ +A T RA +FY+ D L R IT
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAR-IT 902
Query: 138 APEMLAHVEEQL 149
AP A ++ L
Sbjct: 903 APTRQAAIKRAL 914
Score = 36.2 bits (82), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL +T A + L+++ A + T GE+A FYV D G + T
Sbjct: 850 IEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPT 905
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC 52
+ ++ L L I+ +++++ G DVF+VTD LG ++T T I++AL
Sbjct: 864 LTTAISKLNLNIASAHVATFGERARDVFYVTDLLGARITAPTRQAAIKRALV 915
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A++ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
+ DG ++ QR K LT+ L I+RRV L+
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + R F E LS+ A+I T GE+ F++ DA ++
Sbjct: 811 QRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 2 VQVLTDLELVISKSYISSDGGWF-MDVFHVTDQLGNKLTDETL-ILYIQQALC-ASRRGG 58
V ++ L L I + I + F +D + V D G + D + I+ L A R
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 59 GASNEVQKCLKRDVR----PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
+Q+ + R ++ P V+ N T LE+T DRPGL++ I + E
Sbjct: 782 DYPTIIQRRVPRQLKHFNFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
+ A T R +F+I D + +P++ P++ + ++E +
Sbjct: 842 LQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQEAI 881
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 20/156 (12%)
Query: 11 VISKSYISSDGGWFMDVFHVTD-------QLGNKLTDETLILYIQQALCA---------S 54
++ + G +DVF V D + G+KL L + I++ L
Sbjct: 772 IVDARIFTMTNGMALDVFTVQDAAGGGAFESGDKLA--KLSVMIEKVLSGQLKPLHDLTK 829
Query: 55 RRGGGAS-NEVQKCLKRDVRPRHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAV 113
R+ AS V R + + ST +T +EV G DRPGL+ +++ L L + +A
Sbjct: 830 RKAPHASRTRVFHVPPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAK 889
Query: 114 AWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
T+ +A +FY++D G +T LA + E+L
Sbjct: 890 ISTYGEKAIDVFYVKDVF-GLKVTHENKLAQIRERL 924
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ 356
+E+ ++R GLL D+TRA L +S A+I T GEKA FYV D G V
Sbjct: 860 IEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKVTH 913
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 212 VLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT 271
VLID+ ++V+ + DRP LL+D ALT+L + A IS+ G A ++++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDV 906
Query: 272 DGCTLDTESQRQKLTQCLIAAI 293
G + E++ ++ + L+ A+
Sbjct: 907 FGLKVTHENKLAQIRERLLHAL 928
Score = 36.2 bits (82), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC 52
+ + LT+L L IS + IS+ G +DVF+V D G K+T E + I++ L
Sbjct: 874 LTRALTNLTLQISSAKISTYGEKAIDVFYVKDVFGLKVTHENKLAQIRERLL 925
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DR GL+SE++AVL +L + +A T + FY+ D L G I
Sbjct: 839 LSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKI 897
Query: 137 TAPEMLAHVEEQLEIVVGAHHGEGETR---SVRLTTPMPGRTH 176
T+ ++ +L+ V+ E R + TP+P +H
Sbjct: 898 TSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTPVPRASH 940
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVEL- 361
+E+ +R GLLS+VT + L ++ A I T GEK +FYV D G + ++
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMN 905
Query: 362 ----LKQEIGGSV 370
LK + G V
Sbjct: 906 IAARLKAVLAGEV 918
Score = 38.5 bits (88), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNE 63
VL+DL L I+ ++I++ G +D F+VTD +G+K+T E +Q A+R + E
Sbjct: 863 VLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSEN-----RQMNIAARLKAVLAGE 917
Query: 64 VQKCLKR 70
V + +R
Sbjct: 918 VDEARER 924
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A++ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
+ DG ++ QR K LT+ L I+RRV L+
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + R F E LS+ A+I T GE+ F++ DA ++
Sbjct: 811 QRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 2 VQVLTDLELVISKSYISSDGGWF-MDVFHVTDQLGNKLTDETL-ILYIQQALC-ASRRGG 58
V ++ L L I + I + F +D + V D G + D + I+ L A R
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 59 GASNEVQKCLKRDVR----PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
+Q+ + R ++ P V+ N T LE+T DRPGL++ + + E
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG-ETRSVRL 167
+ A T R +F+I D + +P++ P++ + ++E IV G+G +T R+
Sbjct: 842 LQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQE--AIVQQLQAGQGSDTSPTRV 898
Query: 168 T 168
T
Sbjct: 899 T 899
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 72 VRPRHV-----STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFY 126
V PR V S +T +EV G DRPGL+ ++++ L + +A T+ RA +FY
Sbjct: 854 VPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFY 913
Query: 127 IEDGLEGRPITAPEMLAHVEEQL 149
+ D L G IT P LA + E L
Sbjct: 914 VRD-LLGMKITDPVRLARLRETL 935
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 66/174 (37%), Gaps = 37/174 (21%)
Query: 218 KEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS--SKGCFADQEYFIRQTDGCT 275
E+G + + + C D P L AL + A I S G D ++++ +GC+
Sbjct: 751 PERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDT-FWVQDGEGCS 809
Query: 276 LDTESQRQKLTQCLIAAIERRV--------------SHGLR------------------- 302
+ Q +L + A+ R+ S +R
Sbjct: 810 FEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNTASDRHT 869
Query: 303 -LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
+E+ ++R GLL DVT A L +S A I T G +A FYV D G +
Sbjct: 870 VIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGMKIT 923
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 80/213 (37%), Gaps = 30/213 (14%)
Query: 82 TALEVTGVDRPGLMSEISAVLYELGCH-VPAAVAWTHKTRAACIFYIEDGLEGRPITAPE 140
T L V D PGL S+I+ L G V A + A F+++DG EG P
Sbjct: 756 TELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQDG-EGCSFEEPH 814
Query: 141 MLAHVEEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGG 200
L + +E + +R T RR+ + R
Sbjct: 815 QLGRLNHLVEQALSGR------LDIRKGIEDASHHSTSRRMRAIHVPPR----------- 857
Query: 201 AGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC 260
V+ID+ ++V+ + DRP LL D AL+ + A I++ G
Sbjct: 858 -----------VVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGM 906
Query: 261 FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293
A +++R G + + +L + L+A++
Sbjct: 907 RAVDVFYVRDLLGMKITDPVRLARLRETLLASL 939
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCAS 54
+ L+ L IS ++I++ G +DVF+V D LG K+TD + +++ L AS
Sbjct: 885 VTSALSSASLQISSAHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLAS 938
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A++ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
+ DG ++ QR K LT+ L I+RRV L+
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + R F E LS+ A+I T GE+ F++ DA ++
Sbjct: 811 QRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 2 VQVLTDLELVISKSYISSDGGWF-MDVFHVTDQLGNKLTDETL-ILYIQQALC-ASRRGG 58
V ++ L L I + I + F +D + V D G + D + I+ L A R
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 59 GASNEVQKCLKRDVR----PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
+Q+ + R ++ P V+ N T LE+T DRPGL++ + + E
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG-ETRSVRL 167
+ A T R +F+I D + +P++ P++ + ++E IV G+G +T R+
Sbjct: 842 LQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQE--AIVQQLQAGQGSDTSQTRV 898
Query: 168 T 168
T
Sbjct: 899 T 899
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A++ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQRQK-----LTQCL------IAAIERRVSHGLR-------------- 302
+ DG ++ QR K LT+ L I+RRV L+
Sbjct: 751 VLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + R F E LS+ A+I T GE+ F++ DA ++
Sbjct: 811 QRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLS 869
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 17/181 (9%)
Query: 2 VQVLTDLELVISKSYISSDGGWF-MDVFHVTDQLGNKLTDETL-ILYIQQALC-ASRRGG 58
V ++ L L I + I + F +D + V D G + D + I+ L A R
Sbjct: 722 VAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPE 781
Query: 59 GASNEVQKCLKRDVR----PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
+Q+ + R ++ P V+ N T LE+T DRPGL++ + + E
Sbjct: 782 DYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG-ETRSVRL 167
+ A T R +F+I D + +P++ P++ + ++E IV G+G +T R+
Sbjct: 842 LQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQE--AIVQQLQAGQGSDTSQTRV 898
Query: 168 T 168
T
Sbjct: 899 T 899
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 40/212 (18%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A++ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYV 750
Query: 268 IRQTDGCTL-DTESQRQKLTQCLIAA----------IERRVSHGLR-------------- 302
+ DG ++ D ++ +++ + LI A I+RRV L+
Sbjct: 751 VLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIHNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ 356
LE+ +R GLL+ + R F E LS+ A+I T GE+ F+V DA+ ++
Sbjct: 811 QRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANNQPLSD 870
Query: 357 RTVELLKQEIGGSVLVVNKSSNRTSQASSVSL 388
+ QE +V + S ++Q S+ +
Sbjct: 871 PELCARLQET-----IVRRLSEPSAQPQSLQI 897
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 14/161 (8%)
Query: 2 VQVLTDLELVISKS-YISSDGGWFMDVFHVTDQLGNKLTDETL-ILYIQQALCASRRGGG 59
V ++ L L I + I+S + +D + V D G + D I I++ L + +
Sbjct: 722 VAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGDNPARIKQIREGLIEALKNPD 781
Query: 60 A-----SNEVQKCLKRDVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCH 108
V + LK V+ N T LE+T DRPGL++ I + E
Sbjct: 782 EYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLS 841
Query: 109 VPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
+ A T R +F++ D +P++ PE+ A ++E +
Sbjct: 842 LQNAKIATLGERVEDVFFVTDA-NNQPLSDPELCARLQETI 881
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEKGY---SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYF 267
VLI ++ + + + I D+ T+ A+ L + A I +S F Y
Sbjct: 691 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQR-QKLTQCLIAA----------IERRVSHGLR-------------- 302
+ + DG + +R +++ LIAA I+RRV L+
Sbjct: 751 VLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHNDT 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ V + F + LSV A+I T GE+ F+V DA ++
Sbjct: 811 QRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPLS 869
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 64 VQKCLKRDVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
V + LK P V+ N T LE+ DRPGL++ + + + V A T
Sbjct: 791 VPRQLKHFAFPPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATL 850
Query: 118 KTRAACIFYIEDGLEGRPITAPEM 141
R +F++ D + +P++ P++
Sbjct: 851 GERVEDVFFVTDA-DNQPLSDPQL 873
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 3 QVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC 52
Q+ D +L + + I++ G DVF VTD L+D L L +QQA+
Sbjct: 833 QLFLDFDLSVQNAKIATLGERVEDVFFVTDADNQPLSDPQLCLRLQQAII 882
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
S T +EV+G+DRPGL+ +++ + +L ++ +A T RA +FY+ D L G IT
Sbjct: 844 SDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLL-GAQIT 902
Query: 138 APEMLAHVEEQL 149
AP A ++ L
Sbjct: 903 APTRQAAIKRAL 914
Score = 36.6 bits (83), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL +T A + L+++ A + T GE+A FYV D G + T
Sbjct: 850 IEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPT 905
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGA 60
+ ++ L L I+ +++++ G DVF+VTD LG ++T T I++AL G A
Sbjct: 864 LTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDA 923
Query: 61 SNE 63
+ +
Sbjct: 924 AEK 926
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV +DRPGL+SEI+AVL +L + +A T + FY+ D L G+ I
Sbjct: 834 LSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD-LVGQKI 892
Query: 137 TAPEMLAHVEEQLEIVVGAHHGEGETR 163
+ A++ +L+ V+ E R
Sbjct: 893 SNENRRAYITARLKAVMAGEEDEMRER 919
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 212 VLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT 271
V+I + ++V+ ++C+DRP LL + L+DL + A I++ G +++
Sbjct: 828 VIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADL 887
Query: 272 DGCTLDTESQRQKLTQCLIAAI 293
G + E++R +T L A +
Sbjct: 888 VGQKISNENRRAYITARLKAVM 909
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ 356
+E+ +R GLLS++T + L + A I T GEK +FYV D G ++
Sbjct: 841 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKISN 894
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRG 57
+ VL+DL L I + I++ G +D F+V D +G K+++E YI L A G
Sbjct: 855 ITAVLSDLSLDIQSARITTFGEKVIDTFYVADLVGQKISNENRRAYITARLKAVMAG 911
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 86/214 (40%), Gaps = 43/214 (20%)
Query: 90 DRPGLMSEISAVLYELGCHVPAAVAWTHKT-RAACIFYIEDGLEGRPITA---PEMLAHV 145
D PG+ S ++ L +G +V A +T K A +F+I+D EG P P + + +
Sbjct: 749 DHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQDS-EGSPYEISRLPRLTSMI 807
Query: 146 EEQLEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWN 205
++ L+ GE R + R ++R Q +
Sbjct: 808 DKTLK-------GEVVAREA-----LKDRDKLKKREAQFRFP------------------ 837
Query: 206 GCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQE 265
TH+ D+ Y+++ + DRP LL+D L + A I++ G
Sbjct: 838 ----THIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDS 893
Query: 266 YFIRQTDGCTLDTESQRQ----KLTQCLIAAIER 295
++++ G L +++++ KL Q ++ ER
Sbjct: 894 FYVKDMFGLKLHQKNRQETLEKKLRQAIVEGAER 927
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ T++R GLL D+TR N + ++ A I T G + SFYV D G ++Q+
Sbjct: 853 IEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDMFGLKLHQKN 908
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 10 LVISKSYISSDGGWFMDVFHVTDQLGNKLTD---ETLILYIQQALCASRRGGGASNEVQK 66
+V +++Y + DG + VF + D G+ L I + L A + K
Sbjct: 768 VVDARTYTTKDG-YATAVFWIQDSEGSPYEISRLPRLTSMIDKTLKGEVVAREALKDRDK 826
Query: 67 CLKRDVR---PRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
KR+ + P H++ +N T +EV DRPGL+ +++ L ++ +AV T+
Sbjct: 827 LKKREAQFRFPTHIAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATY 886
Query: 118 KTRAACIFYIED 129
+ FY++D
Sbjct: 887 GAQVVDSFYVKD 898
>sp|A3M4Q8|GLND_ACIBT [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=glnD PE=3 SV=2
Length = 887
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNHEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRRGGGASNEVQKCLKRDV 72
I++ + +D + V D+ G LTD ET+ + +AL + G +Q+ + R +
Sbjct: 732 ITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGL---MQRRIPRQL 788
Query: 73 RPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
R H ENT +E++ +D PGL++ + + G + +A T R
Sbjct: 789 R--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGER 846
Query: 121 AACIFYIEDGLEGRPITAPEM 141
A IF++ +G+P+ E+
Sbjct: 847 AEDIFFVTKK-DGKPLNHEEV 866
>sp|B0VC63|GLND_ACIBY [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AYE) GN=glnD PE=3 SV=1
Length = 887
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNNEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRRGGGASNEVQKCLKRDV 72
I++ + +D + V D+ G LTD ET+ + +AL + G +Q+ + R +
Sbjct: 732 ITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGL---MQRRIPRQL 788
Query: 73 RPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
R H ENT +E++ +D PGL++ + + G + +A T R
Sbjct: 789 R--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGER 846
Query: 121 AACIFYIEDGLEGRPITAPEM 141
A IF++ +G+P+ E+
Sbjct: 847 AEDIFFVTKK-DGKPLNNEEV 866
>sp|B7I420|GLND_ACIB5 [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AB0057) GN=glnD PE=3 SV=1
Length = 887
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNNEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRRGGGASNEVQKCLKRDV 72
I++ + +D + V D+ G LTD ET+ + +AL + G +Q+ + R +
Sbjct: 732 ITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGL---MQRRIPRQL 788
Query: 73 RPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
R H ENT +E++ +D PGL++ + + G + +A T R
Sbjct: 789 R--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGER 846
Query: 121 AACIFYIEDGLEGRPITAPEM 141
A IF++ +G+P+ E+
Sbjct: 847 AEDIFFVTKK-DGKPLNNEEV 866
>sp|B7H3W7|GLND_ACIB3 [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain AB307-0294) GN=glnD PE=3 SV=1
Length = 887
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNNEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRRGGGASNEVQKCLKRDV 72
I++ + +D + V D+ G LTD ET+ + +AL + G +Q+ + R +
Sbjct: 732 ITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGL---MQRRIPRQL 788
Query: 73 RPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
R H ENT +E++ +D PGL++ + + G + +A T R
Sbjct: 789 R--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGER 846
Query: 121 AACIFYIEDGLEGRPITAPEM 141
A IF++ +G+P+ E+
Sbjct: 847 AEDIFFVTKK-DGKPLNNEEV 866
>sp|B0VR80|GLND_ACIBS [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain SDF) GN=glnD PE=3 SV=1
Length = 887
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNNEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 23/157 (14%)
Query: 2 VQVLTDLEL-VISKSYISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRR 56
V VL + L V I++ + +D + V D+ G LTD ET+ + +AL +
Sbjct: 716 VAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQ 775
Query: 57 GGGASNEVQKCLKRDVRPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYE 104
G +Q+ + R +R H ENT +E++ +D PGL++ + +
Sbjct: 776 YPGL---MQRRIPRQLR--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMM 830
Query: 105 LGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
G + +A T RA IF++ +G+P+ E+
Sbjct: 831 QGLDIHSARIATLGERAEDIFFVTKK-DGKPLNNEEV 866
>sp|B2HYT7|GLND_ACIBC [Protein-PII] uridylyltransferase OS=Acinetobacter baumannii
(strain ACICU) GN=glnD PE=3 SV=1
Length = 887
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 34/189 (17%)
Query: 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAI-SSKGCFADQEYFIRQTDGCTLDTESQRQ 283
+ I D+P L T+ L + V A I ++ F+ Y + G L + +
Sbjct: 701 IFIYTRDQPNLFATTVAVLDRMNLDVQDAKIITASTAFSLDTYVVLDRFGTLLTDPEREE 760
Query: 284 KLTQCLIAAI----------ERRVSHGLR--------------------LEICTQNRMGL 313
+ L+ A+ +RR+ LR +EI T + GL
Sbjct: 761 TVKNALVKALSQPDQYPGLMQRRIPRQLRHFDIENTVDVTLNEALQQNMVEISTLDHPGL 820
Query: 314 LSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373
L+ V F GL + A I T GE+A F+V G +N V+L +++ + +
Sbjct: 821 LARVGGLFMMQGLDIHSARIATLGERAEDIFFVTKKDGKPLNNEEVKLFSEKLKAA---L 877
Query: 374 NKSSNRTSQ 382
+++SN+ Q
Sbjct: 878 DEASNQICQ 886
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTD----ETLILYIQQALCASRRGGGASNEVQKCLKRDV 72
I++ + +D + V D+ G LTD ET+ + +AL + G +Q+ + R +
Sbjct: 732 ITASTAFSLDTYVVLDRFGTLLTDPEREETVKNALVKALSQPDQYPGL---MQRRIPRQL 788
Query: 73 RPRHVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR 120
R H ENT +E++ +D PGL++ + + G + +A T R
Sbjct: 789 R--HFDIENTVDVTLNEALQQNMVEISTLDHPGLLARVGGLFMMQGLDIHSARIATLGER 846
Query: 121 AACIFYIEDGLEGRPITAPEM 141
A IF++ +G+P+ E+
Sbjct: 847 AEDIFFVTKK-DGKPLNNEEV 866
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
T +EV+G+DRPGL+ E++ + +L ++ +A T RA +FY+ D L G I AP
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTR 908
Query: 142 LAHVEEQL 149
A ++ L
Sbjct: 909 QAAIKSAL 916
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL ++T A + L+++ A + T GE+A FYV D G +N T
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPT 907
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEM 141
T +EV+G+DRPGL+ E++ + +L ++ +A T RA +FY+ D L G I AP
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTR 908
Query: 142 LAHVEEQL 149
A ++ L
Sbjct: 909 QAAIKSAL 916
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL ++T A + L+++ A + T GE+A FYV D G +N T
Sbjct: 852 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPT 907
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A+ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQR-QKLTQCLIAA----------IERRVSHGLR-------------- 302
+ DG ++ R Q++ Q L+ A I+RRV L+
Sbjct: 751 VLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + + F + LS+ A+I T GE+ F+V DA ++
Sbjct: 811 LRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLS 869
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKL-TDETLILYIQQALCASRRGGG-----ASNEVQKCLKR 70
I+S + +D + V D G + + I I+Q L + R V + LK
Sbjct: 738 ITSTSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKH 797
Query: 71 DVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACI 124
V+ +N T LE+ DRPGL++ I + + + A T R +
Sbjct: 798 FAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDV 857
Query: 125 FYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGET 162
F++ D +P++ PE+ A +L++ + +G++
Sbjct: 858 FFVTDA-HNQPLSDPELCA----RLQLAIAEQLADGDS 890
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 73/179 (40%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A+ L + A I+S F Y
Sbjct: 691 VLIKETTQREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYI 750
Query: 268 IRQTDGCTLDTESQR-QKLTQCLIAA----------IERRVSHGLR-------------- 302
+ DG ++ R Q++ Q L+ A I+RRV L+
Sbjct: 751 VLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDA 810
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LEI +R GLL+ + + F + LS+ A+I T GE+ F+V DA ++
Sbjct: 811 LRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHNQPLS 869
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKL-TDETLILYIQQALCASRRGGG-----ASNEVQKCLKR 70
I+S + +D + V D G + + I I+Q L + R V + LK
Sbjct: 738 ITSTSQFTLDTYIVLDADGGSIGNNPARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKH 797
Query: 71 DVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACI 124
V+ +N T LE+ DRPGL++ I + + + A T R +
Sbjct: 798 FAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDV 857
Query: 125 FYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGET 162
F++ D +P++ PE+ A +L++ + +G++
Sbjct: 858 FFVTDA-HNQPLSDPELCA----RLQLAIAEQLADGDS 890
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + +EV G+DRPGL+SEI+ L +L + +A T + FY+ D L G+ I
Sbjct: 842 LSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKI 900
Query: 137 TAPEMLAHVEEQL 149
+P +A + +L
Sbjct: 901 DSPARIATIRNRL 913
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
+E+ +R GLLS++T + L ++ A I T GEK +FYV D +G ++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKID 901
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 5 LTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRG 57
L+DL L I+ ++I++ G +D F+VTD G K+ I I+ L A+ G
Sbjct: 867 LSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPARIATIRNRLMATLEG 919
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQ 281
+SV+ ++ +DRP LL + L+DL + A I++ G +++ G +D+ ++
Sbjct: 846 FSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDLTGQKIDSPAR 905
Query: 282 RQKLTQCLIAAIE 294
+ L+A +E
Sbjct: 906 IATIRNRLMATLE 918
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPIT 137
S T +EV+G+DRPGL+ E++ + +L ++ +A T RA +FY+ D L G I
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903
Query: 138 AP 139
AP
Sbjct: 904 AP 905
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLL ++T A + L+++ A + T GE+A FYV D G +N T
Sbjct: 851 IEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDLLGAQINAPT 906
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV +DRPGL+SEI+AVL +L + +A T + FY+ D L G+ I
Sbjct: 833 LSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTD-LVGQKI 891
Query: 137 TAPEMLAHVEEQLEIVVGAHHGEGETR 163
+ A++ +++ V+ E R
Sbjct: 892 SGDSKRANITARMKAVMAEEEDELRER 918
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
+E+ +R GLLS++T + L + A I T GEK +FYV D G ++
Sbjct: 840 IEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKIS 892
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%)
Query: 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQ 281
++V+ ++C+DRP LL + L+DL + A I++ G +++ G + +S+
Sbjct: 837 FTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGDSK 896
Query: 282 RQKLTQCLIAAI 293
R +T + A +
Sbjct: 897 RANITARMKAVM 908
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 1 MVQVLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDET 42
+ VL+DL L I + I++ G +D F+VTD +G K++ ++
Sbjct: 854 ITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGDS 895
>sp|Q8EGH8|GLND_SHEON [Protein-PII] uridylyltransferase OS=Shewanella oneidensis (strain
MR-1) GN=glnD PE=3 SV=1
Length = 861
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 85/197 (43%), Gaps = 32/197 (16%)
Query: 212 VLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAA--ISSKGCFADQEYFIR 269
VL+ +G + + + C DRPKL F T+ A+ D + + H A ++SK +A + I
Sbjct: 664 VLVSKHTTRGGTELFVYCQDRPKL-FATVMAVLDNKNINVHDANIMTSKDNYALDTFVIL 722
Query: 270 QTDGCTLDTESQRQKLTQCLIAAIE---------RRVSHGLR------------------ 302
+ DG + S+ Q + + L A+ R++S ++
Sbjct: 723 EQDGEPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFNVPTQVSFLESNRHGT 782
Query: 303 --LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVE 360
+E+ + GLL+ V F ++ A+I T GE+A F + G +N+
Sbjct: 783 SMMELIALDTPGLLAKVGDIFYRCNTTLLSAKITTIGERAEDFFILQTNDGLQLNETQEH 842
Query: 361 LLKQEIGGSVLVVNKSS 377
LK+ + ++ +N S
Sbjct: 843 TLKEALISALSAINTES 859
Score = 37.7 bits (86), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 12/128 (9%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNEVQKCLKRDVRPRH 76
++S + +D F + +Q G ++ + I I++AL + + L R ++P +
Sbjct: 708 MTSKDNYALDTFVILEQDGEPVSQLSRIQSIRKALEKALASDNPKLPRFRKLSRKMKPFN 767
Query: 77 VSTE----------NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFY 126
V T+ + +E+ +D PGL++++ + Y + +A T RA F
Sbjct: 768 VPTQVSFLESNRHGTSMMELIALDTPGLLAKVGDIFYRCNTTLLSAKITTIGERAEDFFI 827
Query: 127 IE--DGLE 132
++ DGL+
Sbjct: 828 LQTNDGLQ 835
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ +++ +L ++GA +G
Sbjct: 901 SNATRQGNIKRKLLALLGAENG 922
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 34/50 (68%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCA 53
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T I++ L A
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGNIKRKLLA 915
>sp|Q5LWE5|GLND_RUEPO [Protein-PII] uridylyltransferase OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=glnD PE=3 SV=1
Length = 908
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASG----HDVNQRT 358
+E+ T++R GLL D+ RA + ++ A I T GE+ SFYV D G + QRT
Sbjct: 830 IEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYVKDMFGLKYHSEAKQRT 889
Query: 359 VE 360
+E
Sbjct: 890 LE 891
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 90 DRPGLMSEISAVLYELGCHVPAAVAWTHKT-RAACIFYIEDGLEGRPITAPEMLAHVEEQ 148
D PG+ S ++ L +G +V A ++T K F+I+D EG P A A +
Sbjct: 726 DHPGIFSRMAGALALVGANVVDARSYTTKDGYVTDAFWIQDA-EGHPYEA----ARLPRL 780
Query: 149 LEIVVGAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCT 208
++++ GE R + R ++R ++ + +
Sbjct: 781 SQMILKTLKGEVVARDA-----LKSRDKIKKR-------EKAFNVP-------------- 814
Query: 209 RTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFI 268
TH+ D+ Y+++ + DRP LL+D AL + +A I++ G +++
Sbjct: 815 -THITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATYGEQVVDSFYV 873
Query: 269 RQTDGCTLDTESQRQKLTQCLIAAI 293
+ G +E++++ L L AI
Sbjct: 874 KDMFGLKYHSEAKQRTLETKLRKAI 898
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 10 LVISKSYISSDGGWFMDVFHVTDQLGNKLTDETL------ILYIQQALCASRRGGGASNE 63
+V ++SY + DG + D F + D G+ L IL + +R + ++
Sbjct: 745 VVDARSYTTKDG-YVTDAFWIQDAEGHPYEAARLPRLSQMILKTLKGEVVARDALKSRDK 803
Query: 64 VQKCLKRDVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
++K K P H++ +N T +EV DRPGL+ +++ L ++ AV T+
Sbjct: 804 IKKREKAFNVPTHITFDNEGSDIYTIIEVDTRDRPGLLYDLARALAAANVYIANAVIATY 863
Query: 118 KTRAACIFYIED 129
+ FY++D
Sbjct: 864 GEQVVDSFYVKD 875
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DR GL+SE++AVL +L + +A T + FY+ D L G I
Sbjct: 839 LSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKI 897
Query: 137 TAPEMLAHVEEQLEIVVGAHHGEGETRSVR-LTTPMP 172
T+ ++ +L+ V+ E R + P P
Sbjct: 898 TSENRQMNIAARLKAVLAGEVDEARERMPSGIIAPTP 934
Score = 40.0 bits (92), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVEL- 361
+E+ +R GLLS+VT + L ++ A I T GEK +FYV D G + ++
Sbjct: 846 IEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSENRQMN 905
Query: 362 ----LKQEIGGSV 370
LK + G V
Sbjct: 906 IAARLKAVLAGEV 918
Score = 38.9 bits (89), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALCASRRGGGASNE 63
VL+DL L I+ ++I++ G +D F+VTD +G+K+T E +Q A+R + E
Sbjct: 863 VLSDLSLDIASAHITTFGEKVIDTFYVTDLVGSKITSEN-----RQMNIAARLKAVLAGE 917
Query: 64 VQKCLKR 70
V + +R
Sbjct: 918 VDEARER 924
>sp|Q6FAM5|GLND_ACIAD [Protein-PII] uridylyltransferase OS=Acinetobacter sp. (strain
ADP1) GN=glnD PE=3 SV=1
Length = 888
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC-ASRRGGGASNEVQKCLKRDVRPR 75
I++ + +D + V D+ G LTD +++AL A + +Q+ + R +R
Sbjct: 732 ITATKAFSLDTYVVLDRFGTLLTDPEREHTVKEALIKALSQSDKYPGLMQRRIPRQLR-- 789
Query: 76 HVSTENTA------------LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAAC 123
H ENT +E++ +D+PGL++ + + G + +A T RA
Sbjct: 790 HFDIENTVDITLNPVLQQNMVEISTLDQPGLLARVGGLFMMQGLDIHSAKIATLGERAED 849
Query: 124 IFYIEDGLEGRPITAPEMLAHV 145
IF++ +G+P+T E AH+
Sbjct: 850 IFFVTKK-DGQPMTTDE--AHI 868
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 36/201 (17%)
Query: 212 VLIDSCKEKGYSVVNIKCI--DRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYFI 268
VL+ + ++ V I D+P L T+ L + V A I++ F+ Y +
Sbjct: 686 VLLRAHRQSAQDAVQIFIYTQDKPNLFATTVAVLDRMNLDVQDARIITATKAFSLDTYVV 745
Query: 269 RQTDGCTLDTESQRQKLTQCLIAAI----------ERRVSHGLR---------------- 302
G L + + + LI A+ +RR+ LR
Sbjct: 746 LDRFGTLLTDPEREHTVKEALIKALSQSDKYPGLMQRRIPRQLRHFDIENTVDITLNPVL 805
Query: 303 ----LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT 358
+EI T ++ GLL+ V F GL + A+I T GE+A F+V G +
Sbjct: 806 QQNMVEISTLDQPGLLARVGGLFMMQGLDIHSAKIATLGERAEDIFFVTKKDGQPMTTDE 865
Query: 359 VELLKQEIGGSVLVVNKSSNR 379
+ ++ L ++++SN+
Sbjct: 866 AHIFSAQLK---LALDEASNQ 883
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVE-L 361
+E+ +R GLLS++T + L ++ A I T GEK SFYV D GH ++ T +
Sbjct: 849 IEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNATRQGN 908
Query: 362 LKQEIGGSVLVVN--KSSNRTSQASS 385
+++++ G + N K++ R+SQA++
Sbjct: 909 IRRKLLGVLSGENGSKTNGRSSQAAA 934
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136
+S + T +EV G+DRPGL+SE++ ++ +L + +A T + FY+ D L G I
Sbjct: 842 LSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKI 900
Query: 137 TAPEMLAHVEEQLEIVVGAHHG 158
+ ++ +L V+ +G
Sbjct: 901 SNATRQGNIRRKLLGVLSGENG 922
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 4 VLTDLELVISKSYISSDGGWFMDVFHVTDQLGNKLTDET 42
+++DL L I+ ++I++ G +D F+VTD +G+K+++ T
Sbjct: 866 LISDLSLDIASAHITTFGEKVIDSFYVTDLVGHKISNAT 904
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A+ L + A I+S F Y
Sbjct: 690 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYI 749
Query: 268 IRQTDGCTLDTESQR-QKLTQCLIAA----------IERRVSHGLR-------------- 302
+ +G ++ +R Q++ L A I+RRV L+
Sbjct: 750 VLDNEGGSIGDNPERVQEIRNGLTEALRNPDDYPTIIKRRVPRQLKHFAFAPQVTIHNDA 809
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LE+ +R GLL+ + + F E LS+ A+I T GE+ F++ DA+ H ++
Sbjct: 810 QRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLS 868
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKLTDET-LILYIQQALCASRRGGG-----ASNEVQKCLKR 70
I+S + +D + V D G + D + I+ L + R V + LK
Sbjct: 737 ITSSSKFTLDTYIVLDNEGGSIGDNPERVQEIRNGLTEALRNPDDYPTIIKRRVPRQLKH 796
Query: 71 DVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACI 124
V+ N T LE+ DRPGL++ I + E + A T R +
Sbjct: 797 FAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDV 856
Query: 125 FYIEDGLEGRPITAPEMLAHVEEQL 149
F+I D P++ P++ + +++ +
Sbjct: 857 FFITDA-NNHPLSDPQLCSQLQDAI 880
>sp|Q4ZWT0|GLND_PSEU2 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=glnD PE=3 SV=1
Length = 898
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 212 VLIDSCKEK---GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHA-AISSKGCFADQEYF 267
VLI ++ G + + I D+ T+ A+ L + A I+S F Y
Sbjct: 690 VLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYI 749
Query: 268 IRQTDGCTLDTESQR-----QKLTQCL------IAAIERRVSHGLR-------------- 302
+ +G ++ +R + LT+ L I+RRV L+
Sbjct: 750 VLDHEGGSIGNNPERIQDIREGLTEALRNPDDYPTIIKRRVPRQLKHFAFAPQVTIHNDA 809
Query: 303 ------LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
LE+ +R GLL+ + + F E LS+ A+I T GE+ F++ DA+ H ++
Sbjct: 810 QRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLS 868
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 13/137 (9%)
Query: 17 ISSDGGWFMDVFHVTDQLGNKL-TDETLILYIQQALCASRRGGG-----ASNEVQKCLKR 70
I+S + +D + V D G + + I I++ L + R V + LK
Sbjct: 737 ITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPDDYPTIIKRRVPRQLKH 796
Query: 71 DVRPRHVSTEN------TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACI 124
V+ N T LE+ DRPGL++ I + E + A T R +
Sbjct: 797 FAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDV 856
Query: 125 FYIEDGLEGRPITAPEM 141
F+I D P++ P++
Sbjct: 857 FFITDA-NNHPLSDPQL 872
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 11 VISKSYISSDGGWFMDVFHVTDQLGNKLTDETLILYIQQALC--ASRRGGGASNEVQKCL 68
+I ++ G +D F V D LG L + + I ++ A+ + R + L
Sbjct: 749 IIDARIHTARNGTAVDNFLVQDPLGRPLNEASQIERLKNAIADALANRVKLVPQLAARPL 808
Query: 69 KR------DVRP-----RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117
R DVRP S T +EV DRP L++ ++ L+E V +A T+
Sbjct: 809 ARPRADAFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATY 868
Query: 118 KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149
RA FY+ D L G + + + VE++L
Sbjct: 869 GERAVDTFYVTDVL-GEKVDSEARMKAVEKRL 899
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVN 355
+E+ ++R LL+ + RA E L V A I T GE+A +FYV D G V+
Sbjct: 835 IEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVTDVLGEKVD 887
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,655,559
Number of Sequences: 539616
Number of extensions: 6402338
Number of successful extensions: 16114
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 15793
Number of HSP's gapped (non-prelim): 337
length of query: 424
length of database: 191,569,459
effective HSP length: 120
effective length of query: 304
effective length of database: 126,815,539
effective search space: 38551923856
effective search space used: 38551923856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)