Query 014457
Match_columns 424
No_of_seqs 410 out of 2087
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:18:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05007 PII uridylyl-transfer 100.0 7.6E-28 1.7E-32 267.6 23.6 162 208-370 687-878 (884)
2 PRK01759 glnD PII uridylyl-tra 100.0 1.4E-27 3.1E-32 264.7 23.3 163 207-370 662-853 (854)
3 PRK01759 glnD PII uridylyl-tra 100.0 6.4E-27 1.4E-31 259.5 24.4 182 75-293 671-853 (854)
4 PRK05007 PII uridylyl-transfer 99.9 3.8E-26 8.3E-31 254.1 25.3 184 75-294 695-879 (884)
5 PRK00275 glnD PII uridylyl-tra 99.9 1.2E-25 2.5E-30 250.3 25.5 184 79-295 702-887 (895)
6 TIGR01693 UTase_glnD [Protein- 99.9 4.2E-25 9.1E-30 246.0 24.9 186 75-293 662-849 (850)
7 PRK00275 glnD PII uridylyl-tra 99.9 6E-25 1.3E-29 244.6 24.4 169 208-376 687-891 (895)
8 TIGR01693 UTase_glnD [Protein- 99.9 1.2E-24 2.5E-29 242.5 23.5 163 208-370 654-849 (850)
9 PRK05092 PII uridylyl-transfer 99.9 2.6E-24 5.7E-29 241.2 25.9 188 76-295 727-916 (931)
10 PRK04374 PII uridylyl-transfer 99.9 4.7E-24 1E-28 236.2 25.2 182 76-294 685-867 (869)
11 PRK03059 PII uridylyl-transfer 99.9 1.2E-23 2.5E-28 233.4 24.9 182 76-294 673-855 (856)
12 COG2844 GlnD UTP:GlnB (protein 99.9 4.8E-24 1E-28 226.0 20.1 166 207-373 669-864 (867)
13 PRK03381 PII uridylyl-transfer 99.9 1.1E-23 2.3E-28 231.7 23.3 179 76-290 595-773 (774)
14 PRK04374 PII uridylyl-transfer 99.9 2.3E-23 5.1E-28 230.7 23.7 160 209-371 676-867 (869)
15 PRK03381 PII uridylyl-transfer 99.9 5.6E-23 1.2E-27 226.0 22.2 154 208-367 586-773 (774)
16 PRK05092 PII uridylyl-transfer 99.9 1.2E-22 2.5E-27 228.0 24.1 163 208-370 718-914 (931)
17 PRK03059 PII uridylyl-transfer 99.9 3.2E-22 7E-27 222.0 22.8 159 208-370 664-854 (856)
18 COG2844 GlnD UTP:GlnB (protein 99.9 2.3E-21 5.1E-26 205.8 20.3 181 77-293 680-861 (867)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.4E-20 5.3E-25 146.0 11.1 75 222-296 1-75 (75)
20 cd04897 ACT_ACR_3 ACT domain-c 99.8 1.8E-19 3.8E-24 141.2 11.2 74 81-155 1-74 (75)
21 cd04895 ACT_ACR_1 ACT domain-c 99.8 1.6E-19 3.4E-24 140.4 9.9 69 300-368 1-70 (72)
22 cd04895 ACT_ACR_1 ACT domain-c 99.8 5.4E-19 1.2E-23 137.4 10.5 69 81-150 1-69 (72)
23 cd04896 ACT_ACR-like_3 ACT dom 99.8 5.4E-18 1.2E-22 132.8 9.6 70 301-371 1-73 (75)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 1E-17 2.2E-22 131.2 10.7 71 82-154 1-73 (75)
25 cd04925 ACT_ACR_2 ACT domain-c 99.7 1.1E-16 2.3E-21 125.9 10.4 73 82-155 1-74 (74)
26 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.4E-15 3.1E-20 119.1 10.3 72 81-153 1-73 (73)
27 cd04927 ACT_ACR-like_2 Second 99.6 8.3E-15 1.8E-19 115.8 10.9 71 83-155 2-73 (76)
28 PRK11589 gcvR glycine cleavage 99.6 2.8E-14 6.1E-19 131.7 14.2 142 219-368 5-164 (190)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 3.3E-14 7.2E-19 111.3 10.5 72 222-293 1-73 (73)
30 cd04925 ACT_ACR_2 ACT domain-c 99.6 4.5E-14 9.7E-19 111.0 10.9 72 223-294 1-73 (74)
31 cd04927 ACT_ACR-like_2 Second 99.5 1.1E-13 2.3E-18 109.5 10.5 69 302-370 2-71 (76)
32 PRK11589 gcvR glycine cleavage 99.5 1.1E-12 2.3E-17 121.3 16.3 155 78-292 5-165 (190)
33 cd04926 ACT_ACR_4 C-terminal 99.4 5.1E-12 1.1E-16 98.7 10.4 67 82-150 2-68 (72)
34 cd04926 ACT_ACR_4 C-terminal 99.4 5.8E-12 1.3E-16 98.4 9.8 70 300-369 1-70 (72)
35 cd04928 ACT_TyrKc Uncharacteri 99.3 1E-11 2.3E-16 95.4 9.7 65 223-293 2-67 (68)
36 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 1.6E-11 3.4E-16 94.7 10.2 70 82-153 1-70 (70)
37 COG2716 GcvR Glycine cleavage 99.3 9.6E-12 2.1E-16 110.6 9.7 141 220-368 3-161 (176)
38 cd04928 ACT_TyrKc Uncharacteri 99.3 5.2E-11 1.1E-15 91.6 9.8 65 82-153 2-67 (68)
39 COG2716 GcvR Glycine cleavage 99.2 1.3E-10 2.9E-15 103.4 12.2 159 78-292 2-162 (176)
40 PRK00227 glnD PII uridylyl-tra 99.2 1.2E-10 2.7E-15 126.3 14.2 116 223-347 547-674 (693)
41 PRK00227 glnD PII uridylyl-tra 99.2 2E-10 4.3E-15 124.7 15.6 143 82-293 547-690 (693)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.2E-10 2.6E-15 89.7 10.1 69 301-369 1-69 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 5E-09 1.1E-13 80.1 10.2 69 82-152 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 2.2E-08 4.8E-13 76.5 10.2 69 223-292 1-69 (70)
45 PF13740 ACT_6: ACT domain; PD 98.8 3.5E-08 7.7E-13 77.8 8.7 66 81-154 2-67 (76)
46 PF13740 ACT_6: ACT domain; PD 98.5 1.9E-06 4.2E-11 67.8 10.8 65 222-293 2-66 (76)
47 cd04893 ACT_GcvR_1 ACT domains 98.4 1.7E-06 3.6E-11 68.4 8.2 63 81-151 1-63 (77)
48 PF01842 ACT: ACT domain; Int 98.4 7.1E-07 1.5E-11 67.3 5.8 39 301-339 1-39 (66)
49 cd04870 ACT_PSP_1 CT domains f 98.4 1.2E-06 2.7E-11 68.7 7.1 64 83-153 1-64 (75)
50 PF01842 ACT: ACT domain; Int 98.4 3.3E-06 7.1E-11 63.6 9.1 61 82-151 1-63 (66)
51 cd04870 ACT_PSP_1 CT domains f 98.2 6.5E-06 1.4E-10 64.5 8.3 64 224-293 1-64 (75)
52 cd04894 ACT_ACR-like_1 ACT dom 98.2 5.8E-06 1.3E-10 61.5 6.8 67 82-152 1-67 (69)
53 COG4747 ACT domain-containing 98.2 4.1E-05 8.8E-10 64.4 12.5 112 224-348 5-118 (142)
54 cd04893 ACT_GcvR_1 ACT domains 98.2 1.4E-05 3.1E-10 63.0 8.9 62 223-291 2-63 (77)
55 cd04872 ACT_1ZPV ACT domain pr 98.1 1.1E-05 2.4E-10 65.2 7.0 66 82-153 2-67 (88)
56 cd04875 ACT_F4HF-DF N-terminal 98.0 1.9E-05 4.1E-10 61.6 6.3 65 302-368 1-65 (74)
57 cd04869 ACT_GcvR_2 ACT domains 97.9 4.6E-05 1E-09 60.1 8.2 63 83-152 1-69 (81)
58 PRK00194 hypothetical protein; 97.9 3.1E-05 6.7E-10 62.7 7.3 65 81-151 3-67 (90)
59 cd04872 ACT_1ZPV ACT domain pr 97.9 3.6E-05 7.9E-10 62.2 6.9 64 223-292 2-66 (88)
60 cd04875 ACT_F4HF-DF N-terminal 97.9 6.3E-05 1.4E-09 58.6 7.6 64 83-152 1-66 (74)
61 cd04869 ACT_GcvR_2 ACT domains 97.8 0.00012 2.6E-09 57.8 8.8 36 224-259 1-36 (81)
62 PRK00194 hypothetical protein; 97.8 7.4E-05 1.6E-09 60.5 7.5 65 222-291 3-67 (90)
63 cd04894 ACT_ACR-like_1 ACT dom 97.8 7E-05 1.5E-09 55.9 6.5 67 223-292 1-67 (69)
64 PF13291 ACT_4: ACT domain; PD 97.7 0.0002 4.4E-09 56.5 7.4 61 82-149 7-69 (80)
65 PF13291 ACT_4: ACT domain; PD 97.6 0.00036 7.8E-09 55.1 8.3 63 222-290 6-70 (80)
66 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.00096 2.1E-08 51.5 8.8 59 84-149 2-61 (74)
67 PRK06027 purU formyltetrahydro 97.4 0.00089 1.9E-08 66.1 9.9 67 80-152 5-73 (286)
68 PRK13010 purU formyltetrahydro 97.4 0.0033 7.1E-08 62.1 13.7 104 222-330 9-123 (289)
69 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0014 3E-08 50.6 8.9 61 225-291 2-63 (74)
70 COG3830 ACT domain-containing 97.3 0.00027 5.8E-09 57.0 4.4 68 81-154 3-70 (90)
71 PRK13011 formyltetrahydrofolat 97.3 0.0059 1.3E-07 60.3 14.5 106 222-333 7-122 (286)
72 PRK06027 purU formyltetrahydro 97.3 0.0071 1.5E-07 59.7 14.6 102 221-327 5-116 (286)
73 cd04905 ACT_CM-PDT C-terminal 97.3 0.0022 4.8E-08 50.6 8.9 66 301-368 2-68 (80)
74 COG4747 ACT domain-containing 97.2 0.019 4E-07 48.7 14.4 124 83-292 5-129 (142)
75 TIGR00655 PurU formyltetrahydr 97.2 0.0081 1.8E-07 59.1 14.5 102 224-330 2-114 (280)
76 CHL00100 ilvH acetohydroxyacid 97.2 0.0019 4.2E-08 58.9 8.8 66 301-370 3-68 (174)
77 COG3830 ACT domain-containing 97.2 0.00056 1.2E-08 55.1 4.5 67 222-293 3-69 (90)
78 cd04908 ACT_Bt0572_1 N-termina 97.2 0.003 6.5E-08 48.0 8.2 46 301-348 2-47 (66)
79 PRK13010 purU formyltetrahydro 97.1 0.0016 3.5E-08 64.3 8.5 67 81-152 9-77 (289)
80 cd04877 ACT_TyrR N-terminal AC 97.1 0.0033 7.2E-08 48.9 7.9 35 83-117 2-36 (74)
81 cd04886 ACT_ThrD-II-like C-ter 97.1 0.0049 1.1E-07 46.5 8.7 59 84-149 1-64 (73)
82 PRK13011 formyltetrahydrofolat 97.0 0.0015 3.2E-08 64.5 7.0 66 300-368 7-72 (286)
83 TIGR00655 PurU formyltetrahydr 97.0 0.004 8.7E-08 61.3 9.4 67 83-155 2-70 (280)
84 cd04879 ACT_3PGDH-like ACT_3PG 97.0 0.0042 9E-08 46.5 7.5 44 303-346 2-47 (71)
85 TIGR00119 acolac_sm acetolacta 96.9 0.0048 1E-07 55.5 8.9 66 301-370 2-67 (157)
86 cd04889 ACT_PDH-BS-like C-term 96.9 0.0026 5.7E-08 46.4 6.0 46 84-129 1-47 (56)
87 PRK07431 aspartate kinase; Pro 96.9 0.34 7.3E-06 52.7 24.6 217 79-366 346-580 (587)
88 cd04886 ACT_ThrD-II-like C-ter 96.9 0.0068 1.5E-07 45.7 8.2 61 225-291 1-66 (73)
89 PRK06737 acetolactate synthase 96.9 0.0061 1.3E-07 48.0 8.0 65 301-369 3-67 (76)
90 cd04889 ACT_PDH-BS-like C-term 96.9 0.0032 7E-08 45.9 6.0 46 303-348 1-47 (56)
91 cd04878 ACT_AHAS N-terminal AC 96.8 0.0049 1.1E-07 46.4 7.0 62 302-368 2-64 (72)
92 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.0084 1.8E-07 45.9 8.3 47 83-129 2-49 (79)
93 PRK08178 acetolactate synthase 96.8 0.018 3.9E-07 47.3 10.4 65 221-293 7-73 (96)
94 cd04888 ACT_PheB-BS C-terminal 96.8 0.0098 2.1E-07 45.9 8.5 47 83-129 2-49 (76)
95 cd04880 ACT_AAAH-PDT-like ACT 96.7 0.011 2.4E-07 45.9 8.4 63 304-368 3-66 (75)
96 cd04877 ACT_TyrR N-terminal AC 96.7 0.0077 1.7E-07 46.8 7.5 58 224-290 2-59 (74)
97 PRK13562 acetolactate synthase 96.7 0.0073 1.6E-07 48.4 7.4 67 301-370 3-69 (84)
98 PRK13562 acetolactate synthase 96.7 0.0096 2.1E-07 47.7 8.0 64 224-293 4-69 (84)
99 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.6 0.017 3.6E-07 44.2 8.8 63 302-368 2-65 (79)
100 PRK08178 acetolactate synthase 96.6 0.01 2.3E-07 48.7 7.8 66 300-370 8-73 (96)
101 cd04878 ACT_AHAS N-terminal AC 96.6 0.017 3.7E-07 43.3 8.6 47 83-129 2-49 (72)
102 PRK11895 ilvH acetolactate syn 96.6 0.013 2.8E-07 52.9 8.9 66 301-370 3-68 (161)
103 cd04909 ACT_PDH-BS C-terminal 96.6 0.02 4.3E-07 43.5 8.7 47 301-347 2-50 (69)
104 PRK06737 acetolactate synthase 96.6 0.013 2.9E-07 46.1 7.7 63 223-292 3-67 (76)
105 cd04903 ACT_LSD C-terminal ACT 96.6 0.013 2.9E-07 43.9 7.6 33 303-335 2-34 (71)
106 cd04908 ACT_Bt0572_1 N-termina 96.6 0.0094 2E-07 45.2 6.7 44 82-127 2-45 (66)
107 cd04888 ACT_PheB-BS C-terminal 96.5 0.016 3.5E-07 44.6 8.1 63 224-291 2-65 (76)
108 PRK11152 ilvM acetolactate syn 96.5 0.016 3.4E-07 45.7 7.9 61 301-368 4-66 (76)
109 cd04879 ACT_3PGDH-like ACT_3PG 96.5 0.0086 1.9E-07 44.8 6.3 46 84-129 2-49 (71)
110 COG0788 PurU Formyltetrahydrof 96.5 0.015 3.2E-07 56.1 8.9 66 80-151 6-73 (287)
111 cd04882 ACT_Bt0572_2 C-termina 96.5 0.01 2.2E-07 44.2 6.4 45 303-347 2-46 (65)
112 cd04904 ACT_AAAH ACT domain of 96.4 0.019 4.1E-07 44.8 7.7 49 302-351 2-51 (74)
113 CHL00100 ilvH acetohydroxyacid 96.4 0.016 3.5E-07 52.9 8.4 65 223-294 3-69 (174)
114 cd04902 ACT_3PGDH-xct C-termin 96.3 0.014 3E-07 44.5 6.6 57 303-363 2-60 (73)
115 cd04901 ACT_3PGDH C-terminal A 96.2 0.0046 1E-07 46.8 3.2 44 303-346 2-45 (69)
116 TIGR00119 acolac_sm acetolacta 96.2 0.031 6.7E-07 50.3 8.9 63 83-153 3-67 (157)
117 cd04909 ACT_PDH-BS C-terminal 96.2 0.042 9.1E-07 41.7 8.5 47 82-128 2-50 (69)
118 COG0788 PurU Formyltetrahydrof 96.2 0.013 2.8E-07 56.5 6.6 65 299-368 6-73 (287)
119 cd04874 ACT_Af1403 N-terminal 96.2 0.033 7.2E-07 41.8 7.9 35 302-336 2-36 (72)
120 PRK11895 ilvH acetolactate syn 96.1 0.038 8.2E-07 49.9 9.2 64 82-153 3-68 (161)
121 cd04874 ACT_Af1403 N-terminal 96.1 0.026 5.6E-07 42.4 7.1 46 83-128 2-48 (72)
122 cd04883 ACT_AcuB C-terminal AC 96.1 0.045 9.8E-07 41.7 8.3 35 300-334 1-35 (72)
123 cd04905 ACT_CM-PDT C-terminal 96.1 0.06 1.3E-06 42.3 9.2 48 82-129 2-50 (80)
124 PRK08577 hypothetical protein; 96.0 0.1 2.2E-06 45.6 11.4 67 219-290 53-121 (136)
125 cd04902 ACT_3PGDH-xct C-termin 96.0 0.033 7.2E-07 42.4 7.2 46 84-129 2-49 (73)
126 cd04903 ACT_LSD C-terminal ACT 96.0 0.026 5.7E-07 42.2 6.5 45 84-128 2-48 (71)
127 PRK08577 hypothetical protein; 96.0 0.049 1.1E-06 47.7 9.0 52 76-127 51-104 (136)
128 cd04931 ACT_PAH ACT domain of 95.9 0.066 1.4E-06 43.6 8.7 51 301-352 15-66 (90)
129 PRK11899 prephenate dehydratas 95.9 0.037 8.1E-07 54.4 8.6 58 300-358 194-252 (279)
130 cd04882 ACT_Bt0572_2 C-termina 95.8 0.023 4.9E-07 42.3 5.5 35 84-118 2-36 (65)
131 PRK04435 hypothetical protein; 95.8 0.07 1.5E-06 47.4 9.4 54 76-129 64-118 (147)
132 cd02116 ACT ACT domains are co 95.8 0.065 1.4E-06 36.9 7.6 37 303-339 1-37 (60)
133 cd04884 ACT_CBS C-terminal ACT 95.8 0.057 1.2E-06 41.5 7.7 34 303-336 2-35 (72)
134 cd04901 ACT_3PGDH C-terminal A 95.8 0.018 3.8E-07 43.5 4.7 45 84-128 2-46 (69)
135 cd04876 ACT_RelA-SpoT ACT dom 95.7 0.074 1.6E-06 38.6 8.0 45 84-128 1-46 (71)
136 cd04898 ACT_ACR-like_4 ACT dom 95.7 0.015 3.3E-07 45.2 4.0 65 302-367 2-71 (77)
137 PRK04435 hypothetical protein; 95.6 0.1 2.2E-06 46.5 9.6 69 217-290 64-133 (147)
138 cd04876 ACT_RelA-SpoT ACT dom 95.5 0.11 2.4E-06 37.6 8.3 61 303-368 1-62 (71)
139 PRK07431 aspartate kinase; Pro 95.5 3 6.6E-05 45.3 22.6 98 221-331 347-471 (587)
140 cd04884 ACT_CBS C-terminal ACT 95.4 0.085 1.8E-06 40.5 7.5 33 225-257 2-34 (72)
141 PRK11152 ilvM acetolactate syn 95.4 0.11 2.4E-06 41.0 8.0 62 223-292 4-67 (76)
142 cd02116 ACT ACT domains are co 95.3 0.11 2.5E-06 35.6 7.3 35 225-259 1-35 (60)
143 cd04929 ACT_TPH ACT domain of 95.3 0.076 1.7E-06 41.6 6.7 50 303-353 3-53 (74)
144 PRK07334 threonine dehydratase 95.2 0.093 2E-06 54.3 9.2 64 81-151 326-394 (403)
145 COG0077 PheA Prephenate dehydr 95.1 0.084 1.8E-06 51.7 8.1 75 300-376 194-269 (279)
146 PF13710 ACT_5: ACT domain; PD 95.1 0.065 1.4E-06 40.6 5.7 57 309-369 1-57 (63)
147 TIGR00656 asp_kin_monofn aspar 95.0 0.75 1.6E-05 47.4 15.1 127 221-366 259-398 (401)
148 PRK06635 aspartate kinase; Rev 94.7 0.69 1.5E-05 47.7 14.0 102 221-331 261-374 (404)
149 PRK10622 pheA bifunctional cho 94.6 0.13 2.9E-06 52.9 8.5 73 300-374 297-370 (386)
150 PRK07334 threonine dehydratase 94.5 0.18 4E-06 52.1 9.4 63 223-291 327-394 (403)
151 cd04931 ACT_PAH ACT domain of 94.4 0.45 9.8E-06 38.7 9.4 72 219-294 11-83 (90)
152 PF13710 ACT_5: ACT domain; PD 94.3 0.15 3.2E-06 38.6 6.0 54 90-151 1-56 (63)
153 cd04930 ACT_TH ACT domain of t 94.2 0.22 4.7E-06 42.5 7.5 53 300-353 41-94 (115)
154 PRK10872 relA (p)ppGpp synthet 94.0 0.28 6E-06 54.5 9.7 74 212-291 655-731 (743)
155 cd04883 ACT_AcuB C-terminal AC 93.9 0.29 6.3E-06 37.1 7.1 47 82-128 2-50 (72)
156 cd04871 ACT_PSP_2 ACT domains 93.6 0.065 1.4E-06 42.9 3.1 61 83-151 1-71 (84)
157 cd04898 ACT_ACR-like_4 ACT dom 93.3 0.18 3.9E-06 39.3 4.8 69 84-154 3-75 (77)
158 cd04880 ACT_AAAH-PDT-like ACT 93.3 0.71 1.5E-05 35.6 8.5 64 225-291 2-66 (75)
159 PRK08210 aspartate kinase I; R 93.2 2.5 5.3E-05 43.7 14.7 96 221-330 270-372 (403)
160 cd04885 ACT_ThrD-I Tandem C-te 93.1 0.46 1E-05 36.1 7.0 60 226-291 2-61 (68)
161 PRK11092 bifunctional (p)ppGpp 93.1 0.32 7E-06 53.8 8.5 62 81-149 626-688 (702)
162 PRK11092 bifunctional (p)ppGpp 93.1 0.47 1E-05 52.6 9.7 73 212-290 615-689 (702)
163 PRK10872 relA (p)ppGpp synthet 93.1 0.39 8.5E-06 53.3 9.0 62 81-149 666-729 (743)
164 TIGR00719 sda_beta L-serine de 93.0 0.48 1E-05 44.5 8.3 60 298-361 146-207 (208)
165 TIGR00691 spoT_relA (p)ppGpp s 92.4 0.68 1.5E-05 51.3 9.8 63 222-290 610-673 (683)
166 PF13840 ACT_7: ACT domain ; P 92.4 0.68 1.5E-05 35.0 7.0 35 220-254 4-42 (65)
167 PRK06291 aspartate kinase; Pro 92.3 3.2 6.9E-05 43.8 14.4 130 220-366 319-461 (465)
168 PRK14630 hypothetical protein; 92.3 1.5 3.2E-05 38.9 10.0 92 231-325 6-97 (143)
169 COG1707 ACT domain-containing 92.3 0.59 1.3E-05 42.2 7.3 46 83-128 4-51 (218)
170 PRK06635 aspartate kinase; Rev 92.1 8.7 0.00019 39.6 17.1 33 221-253 339-374 (404)
171 COG0527 LysC Aspartokinases [A 92.0 7.3 0.00016 41.0 16.4 128 220-367 305-445 (447)
172 PRK11790 D-3-phosphoglycerate 92.0 0.29 6.2E-06 50.9 5.9 60 300-363 338-397 (409)
173 COG0317 SpoT Guanosine polypho 92.0 0.54 1.2E-05 51.7 8.2 65 79-149 625-689 (701)
174 TIGR00691 spoT_relA (p)ppGpp s 91.8 0.61 1.3E-05 51.6 8.5 62 81-149 610-672 (683)
175 PLN02317 arogenate dehydratase 91.8 0.71 1.5E-05 47.4 8.3 67 300-368 283-364 (382)
176 PF13840 ACT_7: ACT domain ; P 91.7 0.7 1.5E-05 35.0 6.3 46 79-129 4-53 (65)
177 cd04904 ACT_AAAH ACT domain of 91.6 1.1 2.3E-05 34.8 7.4 48 225-273 3-51 (74)
178 cd04885 ACT_ThrD-I Tandem C-te 91.1 0.65 1.4E-05 35.3 5.6 60 304-368 2-61 (68)
179 PRK09034 aspartate kinase; Rev 90.9 6.3 0.00014 41.5 14.7 104 221-332 307-420 (454)
180 cd04929 ACT_TPH ACT domain of 90.7 1.6 3.5E-05 34.0 7.6 49 225-274 3-52 (74)
181 PRK06349 homoserine dehydrogen 90.6 1.2 2.6E-05 46.5 8.9 65 300-368 348-412 (426)
182 PRK09436 thrA bifunctional asp 90.6 6.6 0.00014 44.6 15.3 101 220-331 313-430 (819)
183 TIGR00719 sda_beta L-serine de 90.4 1.1 2.3E-05 42.3 7.6 54 76-129 143-198 (208)
184 PRK14646 hypothetical protein; 90.4 3.4 7.3E-05 37.1 10.4 95 233-328 7-103 (155)
185 PRK08818 prephenate dehydrogen 90.3 0.62 1.3E-05 47.8 6.3 49 300-349 295-344 (370)
186 PLN02551 aspartokinase 90.3 4.8 0.0001 43.2 13.2 132 220-367 364-508 (521)
187 cd04906 ACT_ThrD-I_1 First of 90.2 2.2 4.7E-05 34.0 8.2 61 224-291 3-64 (85)
188 COG0317 SpoT Guanosine polypho 90.1 1.4 3E-05 48.5 9.1 74 211-290 615-690 (701)
189 PRK14634 hypothetical protein; 89.8 3.5 7.6E-05 37.0 10.0 94 232-326 6-101 (155)
190 PRK14636 hypothetical protein; 89.8 3.6 7.8E-05 37.7 10.3 95 231-326 3-99 (176)
191 PRK14645 hypothetical protein; 89.4 4.9 0.00011 36.0 10.6 94 232-326 8-103 (154)
192 PRK06382 threonine dehydratase 89.2 2.1 4.5E-05 44.4 9.3 67 77-150 326-397 (406)
193 PRK06382 threonine dehydratase 89.0 0.97 2.1E-05 46.8 6.7 51 283-334 314-364 (406)
194 PRK09181 aspartate kinase; Val 88.8 8.5 0.00018 40.8 13.7 114 221-348 328-449 (475)
195 PRK06545 prephenate dehydrogen 88.7 1.7 3.7E-05 44.2 8.2 51 299-349 289-339 (359)
196 cd04871 ACT_PSP_2 ACT domains 88.7 0.31 6.7E-06 39.0 2.2 61 224-291 1-71 (84)
197 COG1707 ACT domain-containing 88.0 1.6 3.4E-05 39.5 6.3 44 303-346 5-48 (218)
198 PRK11790 D-3-phosphoglycerate 87.8 0.98 2.1E-05 46.9 5.8 51 221-274 337-387 (409)
199 TIGR01268 Phe4hydrox_tetr phen 87.7 2.1 4.5E-05 44.7 7.9 52 301-353 17-69 (436)
200 PRK14637 hypothetical protein; 87.3 6.4 0.00014 35.2 9.9 92 232-326 7-99 (151)
201 PRK14640 hypothetical protein; 87.1 6.8 0.00015 35.0 10.1 92 234-328 7-100 (152)
202 PRK14647 hypothetical protein; 87.0 7.4 0.00016 35.0 10.3 91 235-328 10-102 (159)
203 cd04932 ACT_AKiii-LysC-EC_1 AC 87.0 5.7 0.00012 30.9 8.4 56 307-368 11-67 (75)
204 cd04906 ACT_ThrD-I_1 First of 86.7 4.7 0.0001 32.0 8.0 30 83-114 3-32 (85)
205 PRK06545 prephenate dehydrogen 86.4 1.9 4.2E-05 43.8 7.0 37 221-257 289-325 (359)
206 cd04935 ACT_AKiii-DAPDC_1 ACT 86.2 4.4 9.4E-05 31.6 7.4 57 307-368 11-67 (75)
207 PRK11898 prephenate dehydratas 86.2 3.2 7E-05 40.9 8.2 66 301-368 197-264 (283)
208 KOG2663 Acetolactate synthase, 86.0 2.3 5E-05 40.9 6.6 65 299-368 76-141 (309)
209 PRK09224 threonine dehydratase 85.8 33 0.00072 36.7 16.2 108 220-334 326-456 (504)
210 TIGR01270 Trp_5_monoox tryptop 85.8 1.6 3.5E-05 45.7 6.1 53 300-353 31-85 (464)
211 PRK10820 DNA-binding transcrip 85.7 2.3 5E-05 45.6 7.4 43 302-349 2-44 (520)
212 PRK12483 threonine dehydratase 85.5 36 0.00078 36.6 16.3 134 220-368 343-502 (521)
213 PRK00092 ribosome maturation p 85.1 10 0.00022 33.8 10.2 90 234-326 8-99 (154)
214 PRK14638 hypothetical protein; 85.0 11 0.00023 33.7 10.2 99 234-337 9-109 (150)
215 KOG2663 Acetolactate synthase, 84.9 1.8 3.9E-05 41.6 5.3 64 222-292 77-142 (309)
216 TIGR00656 asp_kin_monofn aspar 84.8 51 0.0011 33.9 17.9 32 221-252 336-370 (401)
217 PRK14639 hypothetical protein; 84.8 8.7 0.00019 33.9 9.4 87 239-328 3-91 (140)
218 PRK14633 hypothetical protein; 84.6 12 0.00025 33.5 10.2 89 235-327 6-96 (150)
219 PRK08198 threonine dehydratase 84.2 7.2 0.00016 40.3 10.1 38 78-115 324-361 (404)
220 TIGR00657 asp_kinases aspartat 84.2 26 0.00056 36.7 14.3 101 221-332 301-413 (441)
221 PRK13581 D-3-phosphoglycerate 83.9 2.5 5.4E-05 45.4 6.7 61 300-364 452-514 (526)
222 PRK11899 prephenate dehydratas 83.2 7.6 0.00016 38.3 9.2 56 81-139 194-250 (279)
223 PRK06349 homoserine dehydrogen 83.1 12 0.00027 39.0 11.3 50 80-129 347-396 (426)
224 TIGR01127 ilvA_1Cterm threonin 83.0 3.8 8.1E-05 41.9 7.4 35 300-334 305-339 (380)
225 PRK09084 aspartate kinase III; 82.8 20 0.00043 37.8 12.7 131 220-366 304-445 (448)
226 PRK14631 hypothetical protein; 82.7 15 0.00032 33.6 10.3 94 234-328 9-120 (174)
227 cd04930 ACT_TH ACT domain of t 82.5 6.3 0.00014 33.5 7.3 51 223-274 42-93 (115)
228 COG0440 IlvH Acetolactate synt 82.5 4.2 9.2E-05 36.7 6.5 65 301-370 5-70 (163)
229 PRK08818 prephenate dehydrogen 82.4 2.9 6.3E-05 42.9 6.2 49 80-129 294-343 (370)
230 PRK08210 aspartate kinase I; R 82.1 66 0.0014 33.2 17.4 36 79-114 269-305 (403)
231 TIGR01127 ilvA_1Cterm threonin 81.6 10 0.00022 38.8 9.9 65 79-150 303-372 (380)
232 PRK14643 hypothetical protein; 81.6 16 0.00035 33.1 10.0 93 234-328 10-107 (164)
233 COG0077 PheA Prephenate dehydr 81.5 6.2 0.00014 38.8 7.8 56 80-138 193-249 (279)
234 TIGR01327 PGDH D-3-phosphoglyc 81.5 2.8 6E-05 45.0 5.9 61 300-364 451-513 (525)
235 COG0440 IlvH Acetolactate synt 81.4 4.9 0.00011 36.3 6.5 65 223-294 5-71 (163)
236 PRK06291 aspartate kinase; Pro 81.3 77 0.0017 33.5 18.3 109 79-254 319-433 (465)
237 COG0779 Uncharacterized protei 81.3 17 0.00036 32.6 9.8 89 233-327 8-101 (153)
238 PRK14632 hypothetical protein; 81.0 17 0.00037 33.2 10.0 88 235-326 10-99 (172)
239 cd04922 ACT_AKi-HSDH-ThrA_2 AC 80.7 18 0.00039 26.3 8.6 35 82-116 2-39 (66)
240 cd04919 ACT_AK-Hom3_2 ACT doma 80.7 18 0.00039 26.5 8.6 35 82-116 2-39 (66)
241 PRK09034 aspartate kinase; Rev 80.7 80 0.0017 33.3 17.8 37 221-257 384-423 (454)
242 PRK08961 bifunctional aspartat 80.2 27 0.00058 40.0 13.5 135 220-368 320-461 (861)
243 PLN02550 threonine dehydratase 79.8 62 0.0013 35.4 15.4 134 221-368 416-572 (591)
244 PRK08198 threonine dehydratase 79.7 11 0.00025 38.8 9.6 37 220-256 325-361 (404)
245 cd04890 ACT_AK-like_1 ACT doma 79.3 13 0.00028 27.1 7.4 52 307-366 10-61 (62)
246 COG2150 Predicted regulator of 78.7 9.6 0.00021 34.3 7.3 60 301-363 94-156 (167)
247 cd04912 ACT_AKiii-LysC-EC-like 78.3 16 0.00036 28.0 7.9 62 302-368 3-67 (75)
248 PF02576 DUF150: Uncharacteris 77.6 12 0.00026 32.8 7.7 84 239-325 2-87 (141)
249 cd04937 ACT_AKi-DapG-BS_2 ACT 76.2 26 0.00057 25.8 8.3 29 82-110 2-33 (64)
250 PLN02551 aspartokinase 75.0 1.3E+02 0.0027 32.5 17.6 140 78-293 363-507 (521)
251 COG3283 TyrR Transcriptional r 75.0 7.3 0.00016 39.8 6.2 59 302-368 2-60 (511)
252 cd04937 ACT_AKi-DapG-BS_2 ACT 74.9 11 0.00024 28.0 5.9 40 302-346 3-46 (64)
253 COG2150 Predicted regulator of 74.2 6 0.00013 35.6 4.8 37 80-116 92-130 (167)
254 PRK13581 D-3-phosphoglycerate 74.1 7.4 0.00016 41.8 6.5 51 77-127 448-500 (526)
255 COG3978 Acetolactate synthase 73.0 28 0.00062 27.6 7.7 65 81-154 3-69 (86)
256 cd04922 ACT_AKi-HSDH-ThrA_2 AC 72.1 35 0.00075 24.8 8.4 33 223-255 2-37 (66)
257 TIGR01327 PGDH D-3-phosphoglyc 72.1 7.6 0.00017 41.7 6.0 51 78-128 448-500 (525)
258 PRK10622 pheA bifunctional cho 71.3 22 0.00048 36.7 9.0 57 80-139 296-353 (386)
259 TIGR01124 ilvA_2Cterm threonin 70.3 1.5E+02 0.0033 31.6 15.3 110 220-337 323-455 (499)
260 PRK09436 thrA bifunctional asp 70.0 2E+02 0.0044 32.8 22.4 182 78-334 312-504 (819)
261 cd04934 ACT_AK-Hom3_1 CT domai 69.3 24 0.00053 27.2 6.8 54 308-368 12-65 (73)
262 cd04891 ACT_AK-LysC-DapG-like_ 69.2 16 0.00036 25.6 5.6 42 88-129 8-50 (61)
263 cd04933 ACT_AK1-AT_1 ACT domai 68.6 22 0.00048 28.0 6.5 38 307-348 11-48 (78)
264 cd04868 ACT_AK-like ACT domain 68.4 24 0.00052 24.4 6.3 29 303-331 3-34 (60)
265 PRK14644 hypothetical protein; 68.3 47 0.001 29.1 9.1 77 241-326 6-86 (136)
266 COG4492 PheB ACT domain-contai 68.0 20 0.00043 31.3 6.4 53 77-129 68-121 (150)
267 cd04924 ACT_AK-Arch_2 ACT doma 67.4 44 0.00096 24.1 8.6 35 82-116 2-39 (66)
268 PF05088 Bac_GDH: Bacterial NA 66.9 3.1E+02 0.0067 33.7 21.5 161 208-373 327-564 (1528)
269 COG3978 Acetolactate synthase 66.9 48 0.001 26.4 7.8 61 301-368 4-66 (86)
270 PRK09181 aspartate kinase; Val 66.7 85 0.0018 33.4 12.4 32 79-110 327-361 (475)
271 PRK14635 hypothetical protein; 65.6 55 0.0012 29.5 9.3 96 231-329 4-103 (162)
272 PRK09466 metL bifunctional asp 65.4 1.2E+02 0.0026 34.6 13.9 100 220-330 315-424 (810)
273 cd04868 ACT_AK-like ACT domain 65.3 11 0.00023 26.2 3.9 31 83-113 2-35 (60)
274 PRK14641 hypothetical protein; 64.5 62 0.0013 29.6 9.5 82 244-328 20-107 (173)
275 TIGR02079 THD1 threonine dehyd 63.7 44 0.00096 34.7 9.5 77 220-309 323-401 (409)
276 cd04913 ACT_AKii-LysC-BS-like_ 63.7 21 0.00045 26.4 5.4 42 88-129 9-51 (75)
277 PF05088 Bac_GDH: Bacterial NA 63.3 49 0.0011 40.2 10.7 166 209-374 474-659 (1528)
278 cd04891 ACT_AK-LysC-DapG-like_ 63.3 27 0.00059 24.4 5.8 27 307-333 8-34 (61)
279 cd04912 ACT_AKiii-LysC-EC-like 62.8 53 0.0012 25.1 7.6 62 224-291 3-67 (75)
280 cd04932 ACT_AKiii-LysC-EC_1 AC 61.8 12 0.00026 29.1 3.7 44 82-129 2-48 (75)
281 COG4492 PheB ACT domain-contai 60.4 34 0.00074 29.9 6.5 65 300-368 72-137 (150)
282 PRK12483 threonine dehydratase 60.4 97 0.0021 33.4 11.5 88 271-369 321-409 (521)
283 cd04916 ACT_AKiii-YclM-BS_2 AC 60.2 62 0.0014 23.3 8.7 35 82-116 2-39 (66)
284 PRK08526 threonine dehydratase 59.7 1.5E+02 0.0032 30.8 12.4 82 283-369 310-395 (403)
285 cd04913 ACT_AKii-LysC-BS-like_ 59.6 26 0.00056 25.8 5.3 27 307-333 9-35 (75)
286 cd04892 ACT_AK-like_2 ACT doma 58.3 28 0.00062 24.6 5.2 31 302-332 2-35 (65)
287 PRK08841 aspartate kinase; Val 57.9 77 0.0017 32.8 10.0 105 221-348 257-361 (392)
288 PRK11898 prephenate dehydratas 57.3 55 0.0012 32.2 8.5 66 222-290 196-263 (283)
289 PF04083 Abhydro_lipase: Parti 56.9 15 0.00033 27.7 3.4 33 2-34 2-34 (63)
290 PRK08526 threonine dehydratase 56.6 65 0.0014 33.4 9.2 40 77-116 322-361 (403)
291 cd04892 ACT_AK-like_2 ACT doma 56.2 68 0.0015 22.5 8.4 32 83-114 2-36 (65)
292 cd04915 ACT_AK-Ectoine_2 ACT d 55.6 35 0.00077 25.5 5.4 41 303-346 5-48 (66)
293 TIGR02079 THD1 threonine dehyd 55.4 2.1E+02 0.0046 29.6 12.8 81 283-368 309-390 (409)
294 TIGR01270 Trp_5_monoox tryptop 55.0 41 0.00089 35.5 7.3 53 221-274 30-84 (464)
295 PRK02001 hypothetical protein; 54.3 76 0.0017 28.4 8.0 81 241-328 13-93 (152)
296 PRK14642 hypothetical protein; 53.1 1.2E+02 0.0027 28.3 9.5 89 235-327 3-102 (197)
297 TIGR01268 Phe4hydrox_tetr phen 52.4 70 0.0015 33.6 8.5 66 222-291 16-82 (436)
298 cd04919 ACT_AK-Hom3_2 ACT doma 52.0 89 0.0019 22.6 8.4 35 223-257 2-39 (66)
299 cd04935 ACT_AKiii-DAPDC_1 ACT 51.6 95 0.0021 23.9 7.3 57 229-291 11-67 (75)
300 PRK08639 threonine dehydratase 51.5 97 0.0021 32.2 9.6 37 220-256 334-370 (420)
301 cd04890 ACT_AK-like_1 ACT doma 50.4 25 0.00055 25.5 3.8 37 89-129 11-47 (62)
302 PRK10820 DNA-binding transcrip 50.3 20 0.00043 38.5 4.4 36 83-118 2-37 (520)
303 cd04921 ACT_AKi-HSDH-ThrA-like 49.7 1.1E+02 0.0024 23.1 8.8 37 82-118 2-41 (80)
304 COG2061 ACT-domain-containing 49.6 1.1E+02 0.0023 27.6 8.0 31 222-252 5-35 (170)
305 cd04921 ACT_AKi-HSDH-ThrA-like 46.9 85 0.0019 23.8 6.5 33 302-334 3-38 (80)
306 COG3603 Uncharacterized conser 46.2 30 0.00065 29.6 3.8 28 308-337 74-101 (128)
307 PRK08639 threonine dehydratase 46.0 1.2E+02 0.0026 31.5 9.3 69 77-151 332-401 (420)
308 cd04911 ACT_AKiii-YclM-BS_1 AC 45.6 67 0.0015 25.3 5.6 54 308-368 12-65 (76)
309 cd04936 ACT_AKii-LysC-BS-like_ 44.9 1.1E+02 0.0024 21.6 8.0 31 83-113 2-35 (63)
310 cd04923 ACT_AK-LysC-DapG-like_ 43.7 1.1E+02 0.0025 21.5 7.7 31 83-113 2-35 (63)
311 cd04920 ACT_AKiii-DAPDC_2 ACT 43.6 1.3E+02 0.0028 22.1 7.6 27 83-109 2-31 (63)
312 cd04933 ACT_AK1-AT_1 ACT domai 43.0 22 0.00048 28.0 2.5 37 89-129 12-48 (78)
313 cd04918 ACT_AK1-AT_2 ACT domai 42.0 1.1E+02 0.0024 22.6 6.2 35 83-117 3-39 (65)
314 PLN02317 arogenate dehydratase 40.1 1.7E+02 0.0036 30.3 9.0 52 81-134 283-349 (382)
315 PLN02550 threonine dehydratase 38.9 3.8E+02 0.0082 29.4 11.9 136 227-373 341-484 (591)
316 TIGR00657 asp_kinases aspartat 38.8 4.7E+02 0.01 27.2 17.9 34 221-254 377-413 (441)
317 TIGR01124 ilvA_2Cterm threonin 38.4 1.7E+02 0.0038 31.2 9.2 66 78-151 322-387 (499)
318 KOG2797 Prephenate dehydratase 38.2 85 0.0018 31.4 6.1 104 229-335 189-316 (377)
319 PRK00907 hypothetical protein; 38.1 1.8E+02 0.0039 23.7 7.1 49 81-129 17-69 (92)
320 cd04924 ACT_AK-Arch_2 ACT doma 37.9 1.5E+02 0.0032 21.2 8.5 33 224-256 3-38 (66)
321 cd07247 SgaA_N_like N-terminal 36.4 1.2E+02 0.0026 24.2 6.1 50 221-276 61-110 (114)
322 PRK09224 threonine dehydratase 36.1 3.8E+02 0.0081 28.7 11.3 80 283-369 312-392 (504)
323 KOG0456 Aspartate kinase [Amin 34.8 1.4E+02 0.0031 30.9 7.3 132 221-368 392-536 (559)
324 cd04923 ACT_AK-LysC-DapG-like_ 32.9 95 0.0021 21.9 4.5 30 303-332 3-35 (63)
325 PTZ00324 glutamate dehydrogena 32.7 3.1E+02 0.0066 32.1 10.3 66 209-274 216-286 (1002)
326 cd04914 ACT_AKi-DapG-BS_1 ACT 32.6 71 0.0015 24.0 3.8 30 83-112 3-33 (67)
327 PRK00907 hypothetical protein; 31.4 1.6E+02 0.0034 24.1 5.8 64 222-291 17-84 (92)
328 PF04083 Abhydro_lipase: Parti 31.3 1.3E+02 0.0028 22.6 5.0 33 240-272 2-34 (63)
329 COG0527 LysC Aspartokinases [A 31.2 6.5E+02 0.014 26.6 17.7 33 222-254 383-418 (447)
330 cd04916 ACT_AKiii-YclM-BS_2 AC 30.6 2E+02 0.0044 20.5 8.5 33 224-256 3-38 (66)
331 PRK05925 aspartate kinase; Pro 30.5 6.6E+02 0.014 26.4 13.3 111 221-347 299-417 (440)
332 cd04920 ACT_AKiii-DAPDC_2 ACT 29.2 2.3E+02 0.005 20.7 7.9 27 224-250 2-31 (63)
333 PRK14040 oxaloacetate decarbox 28.5 7.3E+02 0.016 27.3 12.1 88 231-341 152-239 (593)
334 cd04914 ACT_AKi-DapG-BS_1 ACT 28.1 58 0.0013 24.5 2.6 29 303-331 4-33 (67)
335 cd04934 ACT_AK-Hom3_1 CT domai 27.9 50 0.0011 25.4 2.3 53 90-151 13-65 (73)
336 cd04910 ACT_AK-Ectoine_1 ACT d 27.5 1.1E+02 0.0025 23.6 4.2 31 82-112 2-35 (71)
337 PTZ00324 glutamate dehydrogena 27.0 5.4E+02 0.012 30.1 11.0 46 88-134 240-286 (1002)
338 cd07261 Glo_EDI_BRP_like_11 Th 26.3 1.6E+02 0.0034 23.5 5.2 52 221-276 59-110 (114)
339 cd04918 ACT_AK1-AT_2 ACT domai 25.6 2.7E+02 0.0059 20.4 8.3 34 224-257 3-38 (65)
340 PRK14646 hypothetical protein; 25.2 4.9E+02 0.011 23.2 8.8 61 313-374 9-69 (155)
341 cd07253 Glo_EDI_BRP_like_2 Thi 24.7 1.6E+02 0.0034 23.5 5.0 50 302-354 70-120 (125)
342 cd04936 ACT_AKii-LysC-BS-like_ 24.6 2.5E+02 0.0054 19.6 7.8 30 225-254 3-35 (63)
343 cd07247 SgaA_N_like N-terminal 24.6 1.9E+02 0.0042 22.9 5.5 49 300-354 62-110 (114)
344 cd07245 Glo_EDI_BRP_like_9 Thi 24.4 1.4E+02 0.003 23.2 4.4 46 302-354 67-112 (114)
345 PRK12331 oxaloacetate decarbox 23.6 8.8E+02 0.019 25.6 12.0 85 234-341 154-238 (448)
346 PRK14042 pyruvate carboxylase 23.6 7.2E+02 0.016 27.3 10.9 87 231-340 151-237 (596)
347 TIGR01269 Tyr_3_monoox tyrosin 22.6 2.3E+02 0.005 29.8 6.5 62 302-365 41-107 (457)
348 cd04917 ACT_AKiii-LysC-EC_2 AC 22.0 3.1E+02 0.0068 19.8 8.0 27 82-108 2-31 (64)
349 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.9 7.3E+02 0.016 24.0 10.1 69 264-340 164-232 (275)
350 PRK14645 hypothetical protein; 21.9 5.6E+02 0.012 22.8 8.1 61 313-374 11-71 (154)
351 cd07261 Glo_EDI_BRP_like_11 Th 21.6 2.6E+02 0.0056 22.2 5.6 53 79-136 58-110 (114)
352 PRK02047 hypothetical protein; 21.2 4.4E+02 0.0096 21.2 6.7 64 222-291 16-83 (91)
353 PF00903 Glyoxalase: Glyoxalas 21.1 1.9E+02 0.004 23.0 4.7 50 303-354 77-126 (128)
354 COG2061 ACT-domain-containing 20.9 2.4E+02 0.0053 25.4 5.4 32 301-332 6-37 (170)
355 cd07253 Glo_EDI_BRP_like_2 Thi 20.9 2.1E+02 0.0045 22.8 5.0 53 221-276 67-120 (125)
356 PRK14636 hypothetical protein; 20.7 5.2E+02 0.011 23.6 7.8 62 312-374 6-67 (176)
No 1
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=7.6e-28 Score=267.63 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=148.9
Q ss_pred CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT 286 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~ 286 (424)
.+|.|.+++.++.++++|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|||++.+|.++. ++++++|+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~~I~ 765 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQVIR 765 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHHHHH
Confidence 57889999999999999999999999999999999999999999999998 56799999999999999884 56889999
Q ss_pred HHHHHHHhhc---------C--------------------CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457 287 QCLIAAIERR---------V--------------------SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG 337 (424)
Q Consensus 287 ~~L~~al~rr---------~--------------------~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g 337 (424)
++|+++|..+ . +.+|+|||.|.|||||||+|+++|.++|++|++|+|+|.|
T Consensus 766 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~g 845 (884)
T PRK05007 766 KALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIG 845 (884)
T ss_pred HHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccC
Confidence 9999998422 0 1268999999999999999999999999999999999999
Q ss_pred CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 338 EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 338 ~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
++|+|+|||++.+|.|++++.++.|+++|.+++
T Consensus 846 era~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 846 ERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred ceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999778899999999876
No 2
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=1.4e-27 Score=264.66 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=148.4
Q ss_pred CCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHH
Q 014457 207 CTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKL 285 (424)
Q Consensus 207 ~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l 285 (424)
..+|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||.+|+|.| .+|+++|+|||++.+|.++. ++++++|
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~~l 740 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRRQL 740 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHHHH
Confidence 357889999999999999999999999999999999999999999999998 89999999999999999885 5688999
Q ss_pred HHHHHHHHhhc-----------------CC-----------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457 286 TQCLIAAIERR-----------------VS-----------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG 337 (424)
Q Consensus 286 ~~~L~~al~rr-----------------~~-----------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g 337 (424)
++.|.+++..+ .| +.|+|||.|.|||||||+|+++|.++|++|+.|+|+|.|
T Consensus 741 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~g 820 (854)
T PRK01759 741 EQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIG 820 (854)
T ss_pred HHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccC
Confidence 99999988411 01 269999999999999999999999999999999999999
Q ss_pred CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 338 EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 338 ~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
++|+|+|||+|.+|.|++++..++|+++|.+++
T Consensus 821 erv~D~Fyv~~~~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 821 EKAEDFFILTNQQGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred ceEEEEEEEECCCCCcCChHHHHHHHHHHHHHh
Confidence 999999999999999999876699999888754
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6.4e-27 Score=259.46 Aligned_cols=182 Identities=16% Similarity=0.208 Sum_probs=157.4
Q ss_pred CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
++++.++|.|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++ .+|.++. ++++++|++.|.++|
T Consensus 671 ~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~aL 748 (854)
T PRK01759 671 NRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTKAL 748 (854)
T ss_pred ecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHHHH
Confidence 477788999999999999999999999999999999999988 9999999999999 5899884 679999999999999
Q ss_pred ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457 154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp 233 (424)
.+.... . . + +|.. +.. ..+..+|.|.|+|..+..+|+|+|.++|||
T Consensus 749 ~~~~~~-----~----~-----~--~~~~------~~~------------~~~~~~~~V~~dn~~s~~~T~iev~a~Drp 794 (854)
T PRK01759 749 NTNKLK-----K----L-----N--LEEN------HKL------------QHFHVKTEVRFLNEEKQEQTEMELFALDRA 794 (854)
T ss_pred cCCCCc-----c----h-----h--cccc------ccc------------cCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence 875421 0 0 0 0100 000 134567999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
|||++|+++|.++|++|+.|+|+|.|+++.|+|||++.+|.+++++. .+.|++.|.++|
T Consensus 795 GLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~-~~~l~~~L~~~l 853 (854)
T PRK01759 795 GLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEE-RKALKSRLLSNL 853 (854)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHH-HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998754 499999988775
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=3.8e-26 Score=254.06 Aligned_cols=184 Identities=21% Similarity=0.249 Sum_probs=158.4
Q ss_pred CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
++++.++|.|+|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||++ .+|.++. ++++++|++.|.++|
T Consensus 695 ~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~aL 772 (884)
T PRK05007 695 KQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQAL 772 (884)
T ss_pred ecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHHHH
Confidence 367778999999999999999999999999999999999998 6779999999999 5888884 679999999999999
Q ss_pred ccCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457 154 GAHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP 233 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp 233 (424)
.+.... .. .. +|.. +. ..++..+|.|.|+|..+..+|+|+|.++|||
T Consensus 773 ~~~~~~--~~-~~------------~~~~------~~------------~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRp 819 (884)
T PRK05007 773 TQSSPQ--PP-KP------------RRLP------AK------------LRHFNVPTEVSFLPTHTDRRSYMELIALDQP 819 (884)
T ss_pred cCCCCC--cc-cc------------cccc------cc------------cCCCCCCCEEEEccCCCCCeEEEEEEeCCch
Confidence 876422 00 10 1110 00 0134567999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
|||++|+++|.++|++|..|+|+|.|+++.|+|||++.+|.+++ +++++.|++.|.+++.
T Consensus 820 GLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~~L~~~l~ 879 (884)
T PRK05007 820 GLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQRLTEALN 879 (884)
T ss_pred HHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998 5678999999988874
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.2e-25 Score=250.27 Aligned_cols=184 Identities=18% Similarity=0.244 Sum_probs=158.4
Q ss_pred CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCC-cHHHHHHHHHHHHHHHccC
Q 014457 79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPIT-APEMLAHVEEQLEIVVGAH 156 (424)
Q Consensus 79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~-d~~~~~~i~~~L~~~L~~~ 156 (424)
.+.|.|.|+++||||||++|+++|+.+|+||++|+|.| .+|.+.|+|+|++ .+|.++. +++++++|++.|.++|.+.
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999977 8999999999999 4888854 4689999999999999986
Q ss_pred CCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHH
Q 014457 157 HGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLL 236 (424)
Q Consensus 157 ~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL 236 (424)
... ...++ .|+.++. ..+..+|.|.+++..+.++|+|+|+++||||||
T Consensus 781 ~~~--~~~~~--------~~~~~~~----------------------~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLL 828 (895)
T PRK00275 781 DDY--PTIIQ--------RRVPRQL----------------------KHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLL 828 (895)
T ss_pred Ccc--chhhh--------hhhhhhc----------------------cCCCCCCEEEEEECCCCCeEEEEEEECCCCCHH
Confidence 532 11111 0111111 133457999999999999999999999999999
Q ss_pred HHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457 237 FDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER 295 (424)
Q Consensus 237 ~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r 295 (424)
++|+++|+.+|+||++|+|+|.|++++|+|||++.+|.++.++.++++|++.|.++|..
T Consensus 829 a~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~ 887 (895)
T PRK00275 829 ARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDA 887 (895)
T ss_pred HHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998877899999999998853
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=4.2e-25 Score=245.97 Aligned_cols=186 Identities=22% Similarity=0.305 Sum_probs=159.3
Q ss_pred CCCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE-cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 75 RHVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW-THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 75 ~~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~-T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
+....++|.|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||++ .+|.++.+++++++|++.|.++|
T Consensus 662 ~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L 740 (850)
T TIGR01693 662 GTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVL 740 (850)
T ss_pred ccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999 58999999999999 58999988888999999999999
Q ss_pred ccCCCCCccceeeccCCCCCCcchhhh-hhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCC
Q 014457 154 GAHHGEGETRSVRLTTPMPGRTHTERR-LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDR 232 (424)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~g~~h~err-l~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DR 232 (424)
.+...... .+. . ++ .. +. ..++..+|.|.|+|..++.+|+|+|.++||
T Consensus 741 ~~~~~~~~--~~~---~--------~~~~~------~~------------~~~~~~~~~V~~d~~~s~~~t~~~v~~~Dr 789 (850)
T TIGR01693 741 AGLAKDPD--TIS---A--------RRARR------RR------------LQHFAVPPRVTILNTASRKATIMEVRALDR 789 (850)
T ss_pred cCCCcccc--ccc---c--------ccCCc------cc------------ccCCCCCCeEEEccCCCCCeEEEEEEECCc
Confidence 88643211 111 0 10 10 00 013456799999999999999999999999
Q ss_pred hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
||||++|+++|+++|++|.+|+|.|.++.+.|.|||++..|.++.+ .+++.|++.|.+++
T Consensus 790 pGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 790 PGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred cHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987 68899999998775
No 7
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.93 E-value=6e-25 Score=244.61 Aligned_cols=169 Identities=24% Similarity=0.353 Sum_probs=147.6
Q ss_pred CccEEEEeecCC---CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCC-CHHHH
Q 014457 208 TRTHVLIDSCKE---KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLD-TESQR 282 (424)
Q Consensus 208 ~~p~V~v~~~~~---~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~-~~~~~ 282 (424)
..|.|.+.+.++ .+++.|.|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++. ++.++
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 357777877765 58999999999999999999999999999999999987 77899999999999999854 44688
Q ss_pred HHHHHHHHHHHhhc----------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEE
Q 014457 283 QKLTQCLIAAIERR----------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 283 ~~l~~~L~~al~rr----------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
++|++.|.++|..+ .+ ..|.|+|++.||||||++|+++|.++|++|+.|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 99999999887311 00 2689999999999999999999999999999999
Q ss_pred EeecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHhhhhhhccC
Q 014457 333 IGTNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGGSVLVVNKS 376 (424)
Q Consensus 333 i~T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~~~~~~~~~ 376 (424)
|.|.|++++|+|||+|.+|.|+.+ +.++.|+++|.+.+....++
T Consensus 847 I~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 891 (895)
T PRK00275 847 IATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEK 891 (895)
T ss_pred EEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999976 47889999998877555443
No 8
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.93 E-value=1.2e-24 Score=242.46 Aligned_cols=163 Identities=29% Similarity=0.352 Sum_probs=148.6
Q ss_pred CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKGCFADQEYFIRQTDGCTLDTESQRQKLT 286 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~ 286 (424)
..|.|.+.+....++++|+|+++||||||++|+++|+.+|+||.+|+|+ |.+|+++|+|||++.+|.++.+++++++|+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 4688888887778999999999999999999999999999999999999 589999999999999999988877899999
Q ss_pred HHHHHHHhhc------------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 287 QCLIAAIERR------------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 287 ~~L~~al~rr------------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
+.|.++|..+ .+ +.|.|+|.+.||||||++|+++|.++|++|++|+|+
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 9999988421 00 269999999999999999999999999999999999
Q ss_pred ecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 335 TNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 335 T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
|.|++++|+|||++..|.|++++.++.|+++|.+++
T Consensus 814 t~~~~~~d~F~v~~~~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 TFGEKAEDVFYVTDLFGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred ecCccceeEEEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999888899999988764
No 9
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=2.6e-24 Score=241.23 Aligned_cols=188 Identities=24% Similarity=0.361 Sum_probs=161.6
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
++..+.|.|+|+++||||||++|+++|+.+||||++|+|+| .+|.+.|+|+|++ .+|.++.+++++++|++.|..++.
T Consensus 727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l~ 805 (931)
T PRK05092 727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALS 805 (931)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHc
Confidence 55667999999999999999999999999999999999998 8999999999999 488887788999999999999998
Q ss_pred cCCCCCccceeeccCCCCCCcchhhh-hhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCCh
Q 014457 155 AHHGEGETRSVRLTTPMPGRTHTERR-LHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRP 233 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~h~err-l~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRp 233 (424)
+.... ...+. +| ... + . ..++..+|.|.|+|..+.++++|.|+++|||
T Consensus 806 ~~~~~--~~~~~------------~r~~~~-----~---~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~Drp 854 (931)
T PRK05092 806 GEVRL--PEALA------------KRTKPK-----K---R---------ARAFHVPPRVTIDNEASNRFTVIEVNGRDRP 854 (931)
T ss_pred CCCCC--ccccc------------cccCcc-----c---c---------ccCCCCCCEEEEeeCCCCCeEEEEEEECCcC
Confidence 76432 11111 11 000 0 0 0134567999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER 295 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r 295 (424)
|||++|+++|+++|+||.+|+|.|.++++.|+|||++.+|.++.+++.++.|++.|.++|..
T Consensus 855 GLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 855 GLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred cHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998887899999999999853
No 10
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=4.7e-24 Score=236.24 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=153.4
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
.+..+.+.|.|+++||||||++||++|+.+|+||++|+|.| .+|.+.|+|+|.++ .|.+ ++++.+|++.|.++|.
T Consensus 685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~-~~~~---~~~~~~i~~~l~~~l~ 760 (869)
T PRK04374 685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQ-DTYA---DGDPQRLAAALRQVLA 760 (869)
T ss_pred ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCC-CCCC---hHHHHHHHHHHHHHHc
Confidence 45667899999999999999999999999999999999998 89999999999994 6654 3578889999999999
Q ss_pred cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChh
Q 014457 155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPK 234 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpg 234 (424)
++... .. +. . ++.. +. ...+..+|.|.+++..+.++|+|+|.++||||
T Consensus 761 ~~~~~--~~-~~---~--------~~~~------~~------------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG 808 (869)
T PRK04374 761 GDLQK--VR-PA---R--------RAVP------RQ------------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPG 808 (869)
T ss_pred CCCCc--cc-cc---c--------ccCc------cc------------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence 86422 10 11 0 1110 00 01445679999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
||++|+++|+.+|++|+.|+|+|.|++++|+|||++.+|.++.++++ +.|++.|.++|.
T Consensus 809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998776544 999999988763
No 11
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=233.42 Aligned_cols=182 Identities=20% Similarity=0.249 Sum_probs=151.7
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
++..+.+.|.|+++||||||+.|+++|+.+|+||++|+|.| .+|.+.|+|+|.++ +|. ..+++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCC-CChHHHHHHHHHHHHHHHc
Confidence 55668899999999999999999999999999999999976 89999999999994 666 5567899999999999999
Q ss_pred cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChh
Q 014457 155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPK 234 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpg 234 (424)
++..... ... +|.. +.. ..+..+|.|.+++..+.++|+|+|+++||||
T Consensus 751 ~~~~~~~--~~~------------~~~~------~~~------------~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpG 798 (856)
T PRK03059 751 EQAPLPE--PSK------------GRLS------RQV------------KHFPITPRVDLRPDERGQYYILSVSANDRPG 798 (856)
T ss_pred CCCCcch--hhc------------cccc------ccc------------cCCCCCceEEEEEcCCCCEEEEEEEeCCcch
Confidence 8653211 010 1111 000 1345678999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
||++|+++|+.+|+||+.|+|+|.|++++|+|||.+ .++.+++++++|++.|.++|.
T Consensus 799 LLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~---~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 799 LLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG---SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred HHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC---CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999943 334566789999999988763
No 12
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.8e-24 Score=226.05 Aligned_cols=166 Identities=29% Similarity=0.393 Sum_probs=149.2
Q ss_pred CCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHH
Q 014457 207 CTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKL 285 (424)
Q Consensus 207 ~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l 285 (424)
..+|.|.+...+..+.+.|+|+++|+|.||+.+|.++...|+||++|+|+| .+|++.|+|+|.+++|.++. +++...+
T Consensus 669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~~~ 747 (867)
T COG2844 669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRAAL 747 (867)
T ss_pred ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHHHH
Confidence 457888888888889999999999999999999999999999999999988 78999999999999999887 5688888
Q ss_pred HHHHHHHHh---------hcC----------C----------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457 286 TQCLIAAIE---------RRV----------S----------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN 336 (424)
Q Consensus 286 ~~~L~~al~---------rr~----------~----------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~ 336 (424)
+..|.+++. +|. | +.+.|||.+.||||||++|+++|.+++++|++|+|+|.
T Consensus 748 ~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~ 827 (867)
T COG2844 748 RGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTF 827 (867)
T ss_pred HHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccc
Confidence 888888873 111 1 26899999999999999999999999999999999999
Q ss_pred CCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhh
Q 014457 337 GEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373 (424)
Q Consensus 337 g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~ 373 (424)
|++|+|+|||++..|.+++++..+.+.+.+.++++..
T Consensus 828 GErveD~F~vt~~~~~~l~~~~~q~l~~~ll~al~~~ 864 (867)
T COG2844 828 GERVEDVFIVTDADGQALNAELRQSLLQRLLEALLPN 864 (867)
T ss_pred cccceeEEEEeccccccCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999998888888888888876543
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.92 E-value=1.1e-23 Score=231.67 Aligned_cols=179 Identities=20% Similarity=0.201 Sum_probs=145.8
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
++ .+.+.|.|+|+||||||++|+++|+.+||||++|+|+|.+|.+.|+|+|+++ .|.+. .++++++.|.++|.+
T Consensus 595 ~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~----~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 595 AD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPP----DAALLRQDLRRALDG 668 (774)
T ss_pred CC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcc----hHHHHHHHHHHHHcC
Confidence 45 6889999999999999999999999999999999999999999999999994 77643 358899999999998
Q ss_pred CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhH
Q 014457 156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKL 235 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgL 235 (424)
.... ...+. +++.. +.+ + . ...+..+|.|.+++..+.++++|+|+++|||||
T Consensus 669 ~~~~--~~~~~-----------~~~~~--~~~-~--~----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGL 720 (774)
T PRK03381 669 DLDV--LARLA-----------AREAA--AAA-V--P----------VRRPAAPPRVLWLDGASPDATVLEVRAADRPGL 720 (774)
T ss_pred CCch--hhhhh-----------ccccc--ccc-c--c----------cccCCCCcEEEEEECCCCCeEEEEEEeCCchhH
Confidence 5321 00110 01000 000 0 0 013446789999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 236 LFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 236 L~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
|++|+++|+++|+||.+|+|+|.|++++|+|||++.+|.++.++ ++.|++.|.
T Consensus 721 la~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 721 LARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred HHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHHHhh
Confidence 99999999999999999999999999999999999999998764 677766653
No 14
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=2.3e-23 Score=230.70 Aligned_cols=160 Identities=21% Similarity=0.265 Sum_probs=140.7
Q ss_pred ccEEEEee-cCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457 209 RTHVLIDS-CKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT 286 (424)
Q Consensus 209 ~p~V~v~~-~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~ 286 (424)
.|.|.+.. .+..+.+.|.|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|.+++|.+ +.++++|+
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~~i~ 752 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQRLA 752 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHHHHH
Confidence 45565544 77789999999999999999999999999999999999998 789999999999998874 25688899
Q ss_pred HHHHHHHhhc----------CC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457 287 QCLIAAIERR----------VS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN 336 (424)
Q Consensus 287 ~~L~~al~rr----------~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~ 336 (424)
+.|+++|..+ .+ ..|.|+|.+.||||||++|+++|.++|++|+.|+|+|.
T Consensus 753 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~ 832 (869)
T PRK04374 753 AALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATF 832 (869)
T ss_pred HHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEec
Confidence 9999887421 01 15899999999999999999999999999999999999
Q ss_pred CCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhh
Q 014457 337 GEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVL 371 (424)
Q Consensus 337 g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~ 371 (424)
|++++|+|||+|.+|.+++++..+.|+++|.+++-
T Consensus 833 g~~a~D~F~V~d~~g~~~~~~~~~~l~~~L~~~l~ 867 (869)
T PRK04374 833 GERAEDQFQITDEHDRPLSESARQALRDALCACLD 867 (869)
T ss_pred CCEEEEEEEEECCCCCcCChHHHHHHHHHHHHHhc
Confidence 99999999999999999877655999999988663
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.91 E-value=5.6e-23 Score=226.00 Aligned_cols=154 Identities=25% Similarity=0.302 Sum_probs=135.6
Q ss_pred CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQ 287 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~ 287 (424)
..|.|.+.+.+ .+.+.|+|+++||||||++||++|+.+|+||.+|+|+|.+|++.|+|+|.+++|.+. .+++|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~----~~~~l~~ 660 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPP----DAALLRQ 660 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcc----hHHHHHH
Confidence 45788888888 899999999999999999999999999999999999998899999999999988754 2477777
Q ss_pred HHHHHHhh----------c--C--C--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457 288 CLIAAIER----------R--V--S--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEI 333 (424)
Q Consensus 288 ~L~~al~r----------r--~--~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i 333 (424)
.|++++.. + . | ..++|+|.+.||||||++|+++|.++|+||+.|+|
T Consensus 661 ~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI 740 (774)
T PRK03381 661 DLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARV 740 (774)
T ss_pred HHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEE
Confidence 77766521 1 0 0 14899999999999999999999999999999999
Q ss_pred eecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457 334 GTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG 367 (424)
Q Consensus 334 ~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~ 367 (424)
.|.|++++|+|||+|.+|.+++++ ++.|+++|.
T Consensus 741 ~T~g~~a~D~F~V~d~~g~~~~~~-~~~l~~~L~ 773 (774)
T PRK03381 741 ATLGADVVDVFYVTGAAGGPLADA-RAAVEQAVL 773 (774)
T ss_pred eecCCeEEEEEEEECCCCCcCchH-HHHHHHHhh
Confidence 999999999999999999999877 777777764
No 16
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.90 E-value=1.2e-22 Score=227.99 Aligned_cols=163 Identities=22% Similarity=0.301 Sum_probs=147.5
Q ss_pred CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT 286 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~ 286 (424)
.++.|.+.+.++.+++.|+|+++||||||++|+++|+.+|+||.+|+|+| .+|+++|+|+|.+.+|.+..+++++++|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 45788899988889999999999999999999999999999999999998 78899999999999998877778999999
Q ss_pred HHHHHHHhh----------c-CC---------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 287 QCLIAAIER----------R-VS---------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 287 ~~L~~al~r----------r-~~---------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
+.|++++.. + .+ ..+.|+|.+.||||||++|+++|.++|++|..|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 999888721 1 11 258999999999999999999999999999999999
Q ss_pred ecCCceeeEEEEEeCCCCCCChH-HHHHHHHHHHhhh
Q 014457 335 TNGEKATGSFYVMDASGHDVNQR-TVELLKQEIGGSV 370 (424)
Q Consensus 335 T~g~~a~d~Fyv~d~~g~~v~~~-~~~~lr~~l~~~~ 370 (424)
|.|+++.|+|||++.+|.++.++ .++.|+++|.+.+
T Consensus 878 T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~~L~~~L 914 (931)
T PRK05092 878 TYGERAVDVFYVTDLFGLKITNEARQAAIRRALLAAL 914 (931)
T ss_pred EcCCEEEEEEEEeCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999765 7788999988865
No 17
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.89 E-value=3.2e-22 Score=221.97 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=138.3
Q ss_pred CccEEEEeecCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLT 286 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~ 286 (424)
..|.|.+.+.+..+.+.|+|+++||||||++||++|+.+|+||.+|+|+| .+|+++|+|+|.+++|. ...++++++|+
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 35777788888889999999999999999999999999999999999987 78999999999998887 44567899999
Q ss_pred HHHHHHHhh----------cCC--------------------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457 287 QCLIAAIER----------RVS--------------------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN 336 (424)
Q Consensus 287 ~~L~~al~r----------r~~--------------------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~ 336 (424)
+.|.+++.. +.| ..|.|+|.+.||||||++|+++|.++|++|+.|+|.|.
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 999998732 101 25899999999999999999999999999999999999
Q ss_pred CCceeeEEEEEeCCCCCC-ChHHHHHHHHHHHhhh
Q 014457 337 GEKATGSFYVMDASGHDV-NQRTVELLKQEIGGSV 370 (424)
Q Consensus 337 g~~a~d~Fyv~d~~g~~v-~~~~~~~lr~~l~~~~ 370 (424)
|++++|+|||++. +. +++.+++|++.|.+++
T Consensus 823 ~~~v~DvF~V~~~---~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 823 GERVEDTFLIDGS---GLSDNRLQIQLETELLDAL 854 (856)
T ss_pred CCEEEEEEEEcCC---CCCCHHHHHHHHHHHHHHh
Confidence 9999999999543 33 3457889999887743
No 18
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-21 Score=205.75 Aligned_cols=181 Identities=24% Similarity=0.319 Sum_probs=149.9
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
+..+.|.|.|+++|+|.||+.+++.+...|+||++|+|.| .+|++.|+|+|+++ +|.++. +.|...++..|.+++..
T Consensus 680 ~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~-~dr~~~~~~~l~~~l~s 757 (867)
T COG2844 680 PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVE-EDRRAALRGELIEALLS 757 (867)
T ss_pred ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccc-hhHHHHHHHHHHHHHhc
Confidence 4447899999999999999999999999999999999998 89999999999995 888886 77878888888887765
Q ss_pred CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhH
Q 014457 156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKL 235 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgL 235 (424)
.... + ..+ +.. .|++ ..+..+|.|.|.+.....+++++|.+.|||||
T Consensus 758 ~~~~--~-~~~------~r~--~r~~----------------------~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGL 804 (867)
T COG2844 758 GKAQ--P-PRR------RRI--PRKL----------------------RHFPIPPRVTILPTASNDKTVLEVRALDRPGL 804 (867)
T ss_pred CCCC--C-ccc------ccc--Cccc----------------------ceeccCCceeeccccCCCceEEEEEeCCcccH
Confidence 4321 0 010 000 0111 24567899999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 236 LFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 236 L~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
|++++++|++++++|++|+|.|.|+.+.|+|||++..|.+++++ ..+.+.+.|.+++
T Consensus 805 La~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~~ll~al 861 (867)
T COG2844 805 LAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQRLLEAL 861 (867)
T ss_pred HHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998654 5566666665544
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.84 E-value=2.4e-20 Score=146.02 Aligned_cols=75 Identities=63% Similarity=1.063 Sum_probs=72.8
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR 296 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr 296 (424)
||+|+|.|+|||||||+|+++|+++|++|++|+|.|.|+++.|+|||++.+|.++.++.+.++|+++|.++|+||
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~~ 75 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIERR 75 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999999999999989999999999999875
No 20
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=1.8e-19 Score=141.16 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=70.8
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
+|+|||.|+||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.|+.+++++++|++.|.++|..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 6999999999999999999988763
No 21
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=1.6e-19 Score=140.43 Aligned_cols=69 Identities=16% Similarity=0.327 Sum_probs=64.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGG 368 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~ 368 (424)
.|+|||.+.||||||++|+++|+++|++|++|+|+|.|++++|+|||+|.+|+|+.+ +.++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999999999999999999999975 588999988764
No 22
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.79 E-value=5.4e-19 Score=137.42 Aligned_cols=69 Identities=23% Similarity=0.333 Sum_probs=65.8
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE 150 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~ 150 (424)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|++++|+|||++ .+|.|+.|+++++.|+++|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999999999999999 59999999999999998874
No 23
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=5.4e-18 Score=132.79 Aligned_cols=70 Identities=19% Similarity=0.352 Sum_probs=65.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe--ecCCceeeEEEEEeCCCCCCCh-HHHHHHHHHHHhhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG--TNGEKATGSFYVMDASGHDVNQ-RTVELLKQEIGGSVL 371 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~--T~g~~a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~~~~~ 371 (424)
|+|||.+.|||||||+|+++|.++|++|++|+|+ |.|++++|+||| +.+|.|+.+ +.++.|+++|.++++
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 888999866 578999999988764
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.75 E-value=1e-17 Score=131.19 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=67.3
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE--cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW--THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~--T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
|+|+|.++||||||++|+++|+++|++|+.|+|. |.|++++|+||| + .+|.++.|+++++.|++.|.++|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 999999999999 6 478899999999999999998875
No 25
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=1.1e-16 Score=125.89 Aligned_cols=73 Identities=52% Similarity=0.902 Sum_probs=68.6
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCC-CCCCCcHHHHHHHHHHHHHHHcc
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLE-GRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~-g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
|+|+|+++||||||++|+++|+.+||||++|+|+|.++++.|+|||+++ + |.++.+++++++|++.|.++|.|
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~-~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE-ETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC-cCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999999999994 6 78888889999999999998864
No 26
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.64 E-value=1.4e-15 Score=119.05 Aligned_cols=72 Identities=33% Similarity=0.459 Sum_probs=65.9
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
.+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|++.|+|||++ .+|.++.++++++++++.|.++|
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999996 799999999999 48888878899999999997764
No 27
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.60 E-value=8.3e-15 Score=115.77 Aligned_cols=71 Identities=25% Similarity=0.393 Sum_probs=64.8
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
.++|+++||||||++|+++|+.+|+||++|+|.| .+|++.|+|||+++ .+. ..++++++++++.|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA-REL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 99999999999994 665 55678999999999988864
No 28
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.58 E-value=2.8e-14 Score=131.70 Aligned_cols=142 Identities=10% Similarity=0.102 Sum_probs=110.3
Q ss_pred CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh----
Q 014457 219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE---- 294 (424)
Q Consensus 219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~---- 294 (424)
...+.+|++.|+|||||+++++.+|+++|+||.+.+....+|+..-.+.| .+.+ ...++|+..|...-+
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv---s~~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL---SGSW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE---eCCh----hHHHHHHHHHHhhhhhcCe
Confidence 34689999999999999999999999999999999999988866556666 3322 356777777765431
Q ss_pred ----hcC-----C---CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC--ceeeEEEEEeCCCCCCChHHHH
Q 014457 295 ----RRV-----S---HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE--KATGSFYVMDASGHDVNQRTVE 360 (424)
Q Consensus 295 ----rr~-----~---~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~--~a~d~Fyv~d~~g~~v~~~~~~ 360 (424)
++. + ..+.++|.+.||||++++||++|+++|+||...+..|++. ...+.|...-.-..|.+ ..++
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~-~~~~ 156 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS-QDAA 156 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC-CCHH
Confidence 121 1 1489999999999999999999999999999999999985 68888888766566643 2345
Q ss_pred HHHHHHHh
Q 014457 361 LLKQEIGG 368 (424)
Q Consensus 361 ~lr~~l~~ 368 (424)
.|+++|.+
T Consensus 157 ~L~~~l~~ 164 (190)
T PRK11589 157 NIEQAFKA 164 (190)
T ss_pred HHHHHHHH
Confidence 55555554
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=3.3e-14 Score=111.30 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=65.8
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
++.|.|+++||||||++++++|+.+|+||.+|+|.|. +|+++|+|||++.+|.++.+++++++|++.|.+++
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence 3689999999999999999999999999999999986 68999999999999998877788999999987753
No 30
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=4.5e-14 Score=110.98 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=67.3
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC-CCCCCCHHHHHHHHHHHHHHHh
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD-GCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~al~ 294 (424)
|+|+|+++||||||++|+++|+++|+||.+|+++|.++++.|+|||.+++ |.++.+++++++|++.|.+++.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999988 8888787889999999988764
No 31
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=1.1e-13 Score=109.45 Aligned_cols=69 Identities=22% Similarity=0.301 Sum_probs=59.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
.+||.+.||||||++|+++|.++|++|..|+|.| .++++.|+|||+|..|...+++.+++++++|.+.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L 71 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVL 71 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999996 89999999999999877444456677777766543
No 32
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.49 E-value=1.1e-12 Score=121.27 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=108.5
Q ss_pred CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCC
Q 014457 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH 157 (424)
Q Consensus 78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~ 157 (424)
...+.+|+++|+||||+.+.|+++|+++||||.+.+.+..++.++-++.|+.+ +..++.++..|... ....
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~--------~~~~~~le~~L~~l-~~~~ 75 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGS--------WNAITLIESTLPLK-GAEL 75 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCC--------hhHHHHHHHHHHhh-hhhc
Confidence 45689999999999999999999999999999999999999999999999652 23557777776443 2221
Q ss_pred CCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHH
Q 014457 158 GEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLF 237 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~ 237 (424)
++ . + +. +|.. + .. .+ .....+.|+|++.|||||++
T Consensus 76 ~L--~--i----------~v-~~~~----~-----------------~~--~~-------~~~~~~~v~v~G~DrPGIV~ 110 (190)
T PRK11589 76 DL--L--I----------VM-KRTT----A-----------------RP--RP-------AMPATVWVQVEVADSPHLIE 110 (190)
T ss_pred Ce--E--E----------EE-Eecc----c-----------------cc--cc-------cCCceEEEEEEECCCCCHHH
Confidence 11 1 1 11 1110 0 00 00 00113689999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEeeCC------eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 238 DTLCALTDLQYVVFHAAISSKGC------FADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 238 ~i~~~L~~~gl~I~~A~I~T~~~------~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
+++.+|+++|+||.+.+-.+.+. ...-.|.|.-+.+.. .+.|+..|++.
T Consensus 111 ~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~------~~~L~~~l~~l 165 (190)
T PRK11589 111 RFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQD------AANIEQAFKAL 165 (190)
T ss_pred HHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCC------HHHHHHHHHHH
Confidence 99999999999999999887542 333445555555543 34555555543
No 33
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=5.1e-12 Score=98.71 Aligned_cols=67 Identities=31% Similarity=0.535 Sum_probs=61.0
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE 150 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~ 150 (424)
|.|+|.++||||+|++|+++|+.+|+||++|+++|.++++.|+|+|++ .++.++ ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999998889999999999 478877 6788888888763
No 34
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=5.8e-12 Score=98.38 Aligned_cols=70 Identities=57% Similarity=0.921 Sum_probs=64.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS 369 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~ 369 (424)
++.++|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.|+|||.|.+|.+++++.++++++.|+.+
T Consensus 1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~~~~~~~~l~~~l~~~ 70 (72)
T cd04926 1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPVDPKTIEAVRQEIGPA 70 (72)
T ss_pred CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcCCHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999999889999999999999988656888899988853
No 35
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1e-11 Score=95.44 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=56.7
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
..|.|+++||||||++++++|+.+|+||.+|+|.| .+|+++|+|+|.+.+|. +.+.|++.|++++
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~------~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG------ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence 58999999999999999999999999999999997 78999999999998876 2355666666654
No 36
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.32 E-value=1.6e-11 Score=94.65 Aligned_cols=70 Identities=37% Similarity=0.637 Sum_probs=63.4
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
|.|+|.++||||+|++|+++|+++|+||.++++.|.++.+.|+|++++ ..|.+. +.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999998889999999999 478874 6689999999987653
No 37
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.31 E-value=9.6e-12 Score=110.64 Aligned_cols=141 Identities=16% Similarity=0.158 Sum_probs=112.3
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-----H-
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-----I- 293 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-----l- 293 (424)
.+|.+|+++++||||++..+++...+.||||.++++...|+...-+..| .|. ++...+|+..|... |
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~li---sgs----~dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLI---SGS----WDAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEE---eeC----HHHHHHHHHHhhcccccCCeE
Confidence 4689999999999999999999999999999999999988765444444 443 35677777777542 1
Q ss_pred ---hhcC-------CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEEEeCCCCCCChHHHHH
Q 014457 294 ---ERRV-------SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYVMDASGHDVNQRTVEL 361 (424)
Q Consensus 294 ---~rr~-------~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv~d~~g~~v~~~~~~~ 361 (424)
.|.- +..+.++|.+.||||++.++|++|.++|++|+.....|+. ......|++.-.-+.|++ -.+..
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~-~~i~~ 154 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN-LSISA 154 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc-CcHHH
Confidence 1111 1268999999999999999999999999999999998886 447789999777788875 45577
Q ss_pred HHHHHHh
Q 014457 362 LKQEIGG 368 (424)
Q Consensus 362 lr~~l~~ 368 (424)
|+++|.+
T Consensus 155 l~~~f~a 161 (176)
T COG2716 155 LRDAFEA 161 (176)
T ss_pred HHHHHHH
Confidence 7777776
No 38
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.25 E-value=5.2e-11 Score=91.58 Aligned_cols=65 Identities=23% Similarity=0.353 Sum_probs=54.8
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
..|.|+++||||||++|+++|+.+|+||++|+|.| .+|.+.|+|+|.++ +|. ++ +.+++.|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~-~~~---~~---~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW-KRG---ET---AALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC-Ccc---ch---HHHHHHHHHhh
Confidence 47899999999999999999999999999999997 79999999999994 664 22 45566665554
No 39
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.22 E-value=1.3e-10 Score=103.41 Aligned_cols=159 Identities=16% Similarity=0.168 Sum_probs=109.6
Q ss_pred CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCC
Q 014457 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHH 157 (424)
Q Consensus 78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~ 157 (424)
.+++.+|+++|.||||+...|+++..++|||+.++++.++|+.++-+..|+.+ ++...++++.| ..+..+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs--------~dav~~le~~l-~~l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGS--------WDAVTLLEATL-PLLGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeC--------HHHHHHHHHHh-hcccccC
Confidence 35579999999999999999999999999999999999999999999999773 35567788877 3344333
Q ss_pred CCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHH
Q 014457 158 GEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLF 237 (424)
Q Consensus 158 ~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~ 237 (424)
+. .+.++|. + .| .+ + ...-.+.|.|.+.|||||++
T Consensus 73 ~L----~v~m~rt--~-~~----~~---------------------------~-------a~~~~v~v~v~a~DrpgIv~ 107 (176)
T COG2716 73 DL----LVVMKRT--G-AH----PT---------------------------P-------ANPAPVWVYVDANDRPGIVE 107 (176)
T ss_pred Ce----EEEEeec--C-CC----cc---------------------------C-------CCCceEEEEEEecCCccHHH
Confidence 32 1222121 0 00 00 0 01124689999999999999
Q ss_pred HHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 238 DTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 238 ~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
++|..|..+|+||.+....|. .+.-.--|.+.-.-+-|.+- ....|++.+++.
T Consensus 108 ~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~--~i~~l~~~f~al 162 (176)
T COG2716 108 EFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANL--SISALRDAFEAL 162 (176)
T ss_pred HHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcC--cHHHHHHHHHHH
Confidence 999999999999999888772 22222234443333333322 345566666654
No 40
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.21 E-value=1.2e-10 Score=126.27 Aligned_cols=116 Identities=17% Similarity=0.217 Sum_probs=102.1
Q ss_pred EEEEEEe-cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCC---
Q 014457 223 SVVNIKC-IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS--- 298 (424)
Q Consensus 223 tvV~V~~-~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~--- 298 (424)
..++|.. +|+||+|.+++++|+.++++|.+|++.+ +|.+..+|.|....|.+.++ ..+++.+..++....|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 621 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDP----QEFLQAYKSGVYSELPDPA 621 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCCh----HHHHHHHHHhhcCCCCccc
Confidence 4777777 9999999999999999999999999999 88888999999988887644 5677777777654422
Q ss_pred --------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457 299 --------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM 347 (424)
Q Consensus 299 --------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~ 347 (424)
.++++||++.||+|+|+.|+++|- .|..|+++|.|..++|.||++
T Consensus 622 ~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 622 PGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred CCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 268999999999999999999999 899999999999999999997
No 41
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.21 E-value=2e-10 Score=124.66 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=114.7
Q ss_pred EEEEEEe-CCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCC
Q 014457 82 TALEVTG-VDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEG 160 (424)
Q Consensus 82 t~iev~~-~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~ 160 (424)
-.++|.. +|+||+|++++++|+.++++|++|++.+ +|.+...|.|.. ..|.+. || ..+++++...+.++...
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~~- 619 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELPD- 619 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCCc-
Confidence 4777777 9999999999999999999999999999 999999999998 477754 45 56777887777665322
Q ss_pred ccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHH
Q 014457 161 ETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTL 240 (424)
Q Consensus 161 ~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~ 240 (424)
+. ..+|.|.|.. ++++|++.||||+|+.++
T Consensus 620 ----~~----------------------------------------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~ 649 (693)
T PRK00227 620 ----PA----------------------------------------PGITATFWHG------NILEVRTEDRRGALGALL 649 (693)
T ss_pred ----cc----------------------------------------CCCCceEeeC------cEEEEEeCccccHHHHHH
Confidence 00 1236666653 799999999999999999
Q ss_pred HHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 241 ~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
++|. +|.+|++.|.|..++|.||+.. | ..+.++++.+.+++
T Consensus 650 ~~l~----~~~~~~~~~~g~~~~~~~~~~~--~------~~r~~~~~~~~~~~ 690 (693)
T PRK00227 650 GVLP----DLLWITASTPGATMIVQAALKP--G------FDRATVERDVTRVL 690 (693)
T ss_pred HHhh----hhhhHhhcCCCcceEEEEEecC--c------ccHHHHHHHHHHHH
Confidence 9999 8999999999999999999971 1 13566766666654
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.21 E-value=1.2e-10 Score=89.70 Aligned_cols=69 Identities=41% Similarity=0.636 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS 369 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~ 369 (424)
|.++|.+.||||+|++|+++|.++|++|.++++.|.++.+.|+||+.+.+|.|.+.+..+.|++.|.+.
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPLDPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999999889999999999999997666778888887653
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.98 E-value=5e-09 Score=80.13 Aligned_cols=69 Identities=43% Similarity=0.682 Sum_probs=60.4
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
+.|.|.++|+||+|++|+++|+++|++|.++.+.|.+++..++|+|.++ ++.+ .+++++++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~-~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS-DGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC-CCCc-CCHHHHHHHHHHHHhh
Confidence 4688999999999999999999999999999999977799999999984 6665 4567889999988664
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.87 E-value=2.2e-08 Score=76.52 Aligned_cols=69 Identities=30% Similarity=0.401 Sum_probs=60.9
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
+.|.|.++|+||+|++++++|+.+|++|.++.+.+.+++..+.|+|..+++.. .+++++++|++.|..+
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhh
Confidence 36889999999999999999999999999999999766999999999988776 4557889999988764
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.78 E-value=3.5e-08 Score=77.76 Aligned_cols=66 Identities=26% Similarity=0.436 Sum_probs=55.3
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
+.+|+++|+||||+++.++++|+++||||.+.+.++.++++.-++.|+-+ ++..++++++|.+...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--------~~~~~~l~~~L~~l~~ 67 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--------EDSLERLESALEELAE 67 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--------cccHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999873 3466888888866543
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.48 E-value=1.9e-06 Score=67.79 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
+.+|+|.|+||||++++++.+|+++|+||.+.+..+.++...-.+.|.-+ ++..++|+..|.+..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999877777777443 346788888887653
No 47
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.38 E-value=1.7e-06 Score=68.37 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=51.8
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
+.+|.+.|+||||+.++|+++|+++||||.+.+.++.++++.-.+.+.-+ . . ..+.+++.|..
T Consensus 1 ~~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-~---~----~~~~l~~~l~~ 63 (77)
T cd04893 1 HLVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS-W---D----AIAKLEAALPG 63 (77)
T ss_pred CEEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec-c---c----cHHHHHHHHHH
Confidence 36789999999999999999999999999999999999988777766642 1 1 23677777755
No 48
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.38 E-value=7.1e-07 Score=67.27 Aligned_cols=39 Identities=21% Similarity=0.495 Sum_probs=36.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK 339 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~ 339 (424)
|.+.+.++||||+|++|+++|.++|+||..+...+.++.
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~ 39 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDG 39 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESST
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCC
Confidence 578999999999999999999999999999999998876
No 49
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=1.2e-06 Score=68.65 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=52.5
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
+|++.|+||||++++++++|+++||||.+.+..+.++++...|.|.-| .+. ..+.+++.|....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p-~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP-DSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC-CCC------CHHHHHHHHHHHH
Confidence 378999999999999999999999999999988888999999988764 321 2366777775543
No 50
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.36 E-value=3.3e-06 Score=63.57 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=46.8
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCc--eEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKT--RAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~--r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
+.|.+.++||||+|++|+.+|+++|+||..+.+.+.++ ....++.+.+ ....+++.+.|.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999655 4444444444 2344556666654
No 51
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.23 E-value=6.5e-06 Score=64.52 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=50.8
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
+|+|.++||||++++++++|+++|+||.+.+..+.+++..-.|.+.-+.+. ..+.|++.|++..
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA------DSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence 478999999999999999999999999999988877766667777655442 2466777776543
No 52
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=5.8e-06 Score=61.54 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=59.0
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
++|+|.++|+.||=.+|++++.+.|++|..+.+.|.|....-+|+|... . ..+ +-+|+.++++|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~-~-~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR-P-PSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC-C-CCC--cccHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999999999999873 3 223 45899999998654
No 53
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.19 E-value=4.1e-05 Score=64.41 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=83.8
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-HhhcCCCceE
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-IERRVSHGLR 302 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l~rr~~~~~~ 302 (424)
.|+|...++||-|..++.+|...|+||..-+|.-.+++-+-.+.|.. + +.-.+.|+++ +. +...-+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~--------~---d~A~~~Lee~gF~--Vr~~dV 71 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR--------P---DEAHSVLEEAGFT--VRETDV 71 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC--------h---HHHHHHHHHCCcE--EEeeeE
Confidence 68899999999999999999999999999999877777666665522 1 1222344432 10 112457
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEe
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMD 348 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d 348 (424)
+-|..+|+||=|+.|..+|-+.++|+.++..-+ ..++|.=.|.+.|
T Consensus 72 laVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 72 LAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred EEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 888999999999999999999999999877643 3466666665533
No 54
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.16 E-value=1.4e-05 Score=63.01 Aligned_cols=62 Identities=16% Similarity=0.171 Sum_probs=47.1
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.+|++.|+||||++++|+..|+++|+||.+.+.+..++...-...+.. .. ...+.|++.|++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~---~~----~~~~~l~~~l~~ 63 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG---SW----DAIAKLEAALPG 63 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe---cc----ccHHHHHHHHHH
Confidence 689999999999999999999999999999999997775533333322 11 134566666655
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=1.1e-05 Score=65.19 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=52.9
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
..|++.|+||||++++|+++|+++||||.+.+..+.++++...+.+.-+ . ... ..+.+++.|....
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~-~-~~~----~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS-E-SNL----DFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC-C-CCC----CHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999988888888888753 2 011 2366777775543
No 56
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=1.9e-05 Score=61.60 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=46.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+|.+.++||||++++||++|+++|+||...+..+.. ....|++.-.-..|-.+..++.|+++|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDP--DSGRFFMRVEFELEGFDLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecC--CCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 378999999999999999999999999998887732 33468885443333211135566655544
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.95 E-value=4.6e-05 Score=60.12 Aligned_cols=63 Identities=24% Similarity=0.291 Sum_probs=48.1
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC------ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK------TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~------~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
.|++.|+|+||++++|+++|+++||||.+.+..|.+ +++.-.+.+.-+ .+ + ..+.+++.|...
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p-~~--~----~~~~l~~~l~~l 69 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP-AG--T----DLDALREELEEL 69 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC-CC--C----CHHHHHHHHHHH
Confidence 378999999999999999999999999999999966 556666666553 21 1 136677777553
No 58
>PRK00194 hypothetical protein; Validated
Probab=97.94 E-value=3.1e-05 Score=62.72 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=51.0
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
...|++.|+||||++++|+++|+++||||.+.+-.+.++++...+.+.-+ +.+. + .+.+++.|..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~--~~~~-~---~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS--ESKK-D---FAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec--CCCC-C---HHHHHHHHHH
Confidence 57899999999999999999999999999999998888887776666542 2122 1 2566666654
No 59
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.90 E-value=3.6e-05 Score=62.15 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=48.8
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC-CCCCCCHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD-GCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~-g~~~~~~~~~~~l~~~L~~a 292 (424)
.+|++.|+||||++++++++|+++|+||.+.+..+.++...-.+.+..+. +. ..+.|++.|+..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~------~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNL------DFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCC------CHHHHHHHHHHH
Confidence 48999999999999999999999999999999988777655555554432 11 245666666553
No 60
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=6.3e-05 Score=58.62 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=44.3
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
+|++.|+||||++++|+++|+++||||.+.+.++ .++...-.+.+.-+ .+ ++ ..+.+++.|...
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~-~~-~~----~~~~l~~~l~~l 66 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE-GF-DL----SREALEAAFAPV 66 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC-CC-CC----CHHHHHHHHHHH
Confidence 4789999999999999999999999999999987 33333333333221 11 01 246777777553
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.84 E-value=0.00012 Score=57.77 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=33.8
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG 259 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~ 259 (424)
+|+|.|+|+||++++|+..|+++|+||.+.+..+.+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 478999999999999999999999999999998865
No 62
>PRK00194 hypothetical protein; Validated
Probab=97.82 E-value=7.4e-05 Score=60.47 Aligned_cols=65 Identities=8% Similarity=0.125 Sum_probs=48.2
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+++|+|.|+||||++++++..|+++|+||.+.+-.+.++...-.+.+.-+. .+. ..+.|++.|.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~----~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKK----DFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCC----CHHHHHHHHHH
Confidence 579999999999999999999999999999999888777655544443321 111 23556665554
No 63
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=7e-05 Score=55.85 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=57.1
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
++|+|.|||+.||=.|+++++.+.|++|..+.++|.|...+-+|+|...... + .-++..|++.|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999754322 2 13788888888754
No 64
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.65 E-value=0.0002 Score=56.51 Aligned_cols=61 Identities=28% Similarity=0.427 Sum_probs=46.5
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
+.|.|.+.||||+|++|+.++++.|+||.+..+.+. ++.+.-.|.|.- .|.+.+..+-+.|
T Consensus 7 ~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L 69 (80)
T PF13291_consen 7 VRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKL 69 (80)
T ss_dssp EEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 679999999999999999999999999999999994 677777777654 2345555555444
No 65
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.61 E-value=0.00036 Score=55.05 Aligned_cols=63 Identities=14% Similarity=0.107 Sum_probs=48.6
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
.+.+.|.+.||||+|++|+.+++++|+||.+..+.+ .++.+.-.|.|.-. +.+.++.|.+.|+
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHH
Confidence 458899999999999999999999999999999998 36777777777432 3346677766664
No 66
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.00096 Score=51.51 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=45.4
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
|.+.+.||||+|++|+.++++.|+||.+....+. ++.+...|.+.- .+.+.++.+...|
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L 61 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAV 61 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHH
Confidence 6899999999999999999999999998887764 466665565543 2345666666665
No 67
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.40 E-value=0.00089 Score=66.07 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=51.9
Q ss_pred CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
.+..|++.|+||||+.++|+++|+++||||.+.+.++ .++.+.-.+.+.- +..+. .++.|++.|.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~~----~~~~L~~~L~~l 73 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLIF----NLETLRADFAAL 73 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCCC----CHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999 7776666555543 11222 257777777543
No 68
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.40 E-value=0.0033 Score=62.14 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=63.3
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCC-eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGC-FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--- 295 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~-~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--- 295 (424)
..+|+|.|+|||||.+.|+..|+++|+||.+.+-.+ ..+ +.. .+.+.......+ ..+.|++.|.+.-++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm-~i~~~~~~~~~~----~~~~l~~~l~~l~~~l~l 83 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFM-RVSFHAQSAEAA----SVDTFRQEFQPVAEKFDM 83 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEE-EEEEEcCCCCCC----CHHHHHHHHHHHHHHhCC
Confidence 469999999999999999999999999999999873 222 221 111211111112 245666666554321
Q ss_pred -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEE
Q 014457 296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSM 330 (424)
Q Consensus 296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~ 330 (424)
...+..+|-|..--+.--|.++.....+..++.+=
T Consensus 84 ~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i 123 (289)
T PRK13010 84 QWAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDI 123 (289)
T ss_pred eEEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEE
Confidence 11223344444444555677777777766665443
No 69
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.39 E-value=0.0014 Score=50.59 Aligned_cols=61 Identities=10% Similarity=0.147 Sum_probs=46.8
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+.|.+.||||+|++|+.++++.|.||.+....+. .+.+.-.|.+.- .+...++.+.+.|++
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev------~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA------PSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc------CCHHHHHHHHHHHhc
Confidence 6789999999999999999999999999888764 466666666632 223466777777653
No 70
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.35 E-value=0.00027 Score=56.97 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=53.1
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
..+|+|+|.||||+.+.|+++|+++|+||++-.-+-..|++.-.+.|.-+ . . ......+++.|....+
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~-~-~----~~d~~~lr~~l~~~~~ 70 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS-K-E----VVDFAALRDELAAEGK 70 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC-h-H----hccHHHHHHHHHHHHH
Confidence 46899999999999999999999999999998877788998888888542 1 1 1123566666655544
No 71
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.32 E-value=0.0059 Score=60.27 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=67.2
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh----
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER---- 295 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r---- 295 (424)
..+|+|.|+|||||+++++..|+++|+||.+.+..+. +++..-.+.+..+.+. ..+.|++.|++.-+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~~~l~l~ 80 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIAARFGMQ 80 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHHHHhCcE
Confidence 4689999999999999999999999999999999863 2333334444334332 245666666654321
Q ss_pred ----cCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457 296 ----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEI 333 (424)
Q Consensus 296 ----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i 333 (424)
...+..+|-|.+--+---|..+...+....++.+=+-+
T Consensus 81 i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~v 122 (286)
T PRK13011 81 WELHDPAARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGV 122 (286)
T ss_pred EEEeecccCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEE
Confidence 11123345554444555677777777766655443333
No 72
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.28 E-value=0.0071 Score=59.74 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=62.7
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh---
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--- 295 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--- 295 (424)
...+|+|.|+|||||+++|+.+|+++|+||.+.+..+ .+|...-.+.+.. +..+. ..+.|++.|++.-+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~-~~~~~----~~~~L~~~L~~l~~~l~l 79 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG-DGLIF----NLETLRADFAALAEEFEM 79 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe-CCCCC----CHHHHHHHHHHHHHHhCC
Confidence 3579999999999999999999999999999999998 6664322333321 11121 256677777654321
Q ss_pred -----cCCCceEEEEEeCCCCchHHHHHHHHHHCCce
Q 014457 296 -----RVSHGLRLEICTQNRMGLLSDVTRAFRENGLS 327 (424)
Q Consensus 296 -----r~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~ 327 (424)
..++..+|-|.+--+---|..+-.......++
T Consensus 80 ~i~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~~~~~ 116 (286)
T PRK06027 80 DWRLLDSAERKRVVILVSKEDHCLGDLLWRWRSGELP 116 (286)
T ss_pred EEEEcccccCcEEEEEEcCCCCCHHHHHHHHHcCCCC
Confidence 11123334444443444455555555554443
No 73
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.27 E-value=0.0022 Score=50.62 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=46.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+.+.+..+|+||.|++|...|+++|+||.+......++ ...=.|||.- +|. .+.+.++.+-+.|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~-~~~-~~~~~~~~~l~~l~~ 68 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF-EGH-IEDPNVAEALEELKR 68 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE-ECC-CCCHHHHHHHHHHHH
Confidence 45778889999999999999999999999987766543 4556788843 354 333333333344444
No 74
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.25 E-value=0.019 Score=48.67 Aligned_cols=124 Identities=16% Similarity=0.082 Sum_probs=84.5
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHccCCCCCcc
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGAHHGEGET 162 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~~~~~~~~ 162 (424)
.|.+...++||=|+.++.+|.+.|+||..-.|.-.++--.--+.|.+ |+.. ..+|...
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d~A-------~~~Lee~------ 62 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PDEA-------HSVLEEA------ 62 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hHHH-------HHHHHHC------
Confidence 57889999999999999999999999988777655543333333332 1110 1111110
Q ss_pred ceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEecCChhHHHHHHHH
Q 014457 163 RSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCIDRPKLLFDTLCA 242 (424)
Q Consensus 163 ~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~DRpgLL~~i~~~ 242 (424)
| -.|.+ ..++-|..+|+||=|..|+.+
T Consensus 63 ----------g------------------------------------F~Vr~-------~dVlaVEmeD~PG~l~~I~~v 89 (142)
T COG4747 63 ----------G------------------------------------FTVRE-------TDVLAVEMEDVPGGLSRIAEV 89 (142)
T ss_pred ----------C------------------------------------cEEEe-------eeEEEEEecCCCCcHHHHHHH
Confidence 0 01111 348888999999999999999
Q ss_pred HHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 243 LTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 243 L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
|.+.++|+...-.++ ....|+-.|-+ +..++.++.|+.+
T Consensus 90 l~d~diNldYiYAFv~ek~KAlli~r~-----------ed~d~~~~aLed~ 129 (142)
T COG4747 90 LGDADINLDYIYAFVTEKQKALLIVRV-----------EDIDRAIKALEDA 129 (142)
T ss_pred HhhcCcCceeeeeeeecCceEEEEEEh-----------hHHHHHHHHHHHc
Confidence 999999999998887 44566655444 3455666666654
No 75
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.24 E-value=0.0081 Score=59.10 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=67.6
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc-----
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR----- 296 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr----- 296 (424)
+|+|.|+|||||++.|++.|+++|+||.+.+.+.. +++..-.+.+..+ +..+ ..+.|++.|.+++..+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~----~~~~l~~~l~~~~~~~~~l~i 76 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRL----EESSLLAAFKSALAEKFEMTW 76 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCC----CHHHHHHHHHHHHHHHhCCEE
Confidence 68999999999999999999999999999998874 3544444444322 2122 2456777776633211
Q ss_pred ----CCCceEEEEEeCCCCchHHHHHHHHHHCCceEEE
Q 014457 297 ----VSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSM 330 (424)
Q Consensus 297 ----~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~ 330 (424)
..+..+|-|..--+---|.+|.....+..++..=
T Consensus 77 ~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i 114 (280)
T TIGR00655 77 ELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAEI 114 (280)
T ss_pred EEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEE
Confidence 1123445555555556778888888777665443
No 76
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.18 E-value=0.0019 Score=58.93 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=50.2
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..+.|.+.|+||+|++|+.+|+.+|+||.+..+..........+.+.-. -++..+++|+++|.+.+
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~----~~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP----GDDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE----CCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999998886644444445555432 22334788888888744
No 77
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.18 E-value=0.00056 Score=55.10 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=46.8
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
..+|+|.++||||+.++++++|+++|+||.+-.-.-..++.--.+.|..+... .....+++.|.+..
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~-----~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEV-----VDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHh-----ccHHHHHHHHHHHH
Confidence 46899999999999999999999999999986544455655444555222111 23456666666544
No 78
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.003 Score=47.95 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=38.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD 348 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d 348 (424)
.++.|..+|+||.|++|+.+|.++|+||.+..+...+++ ..|.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 368889999999999999999999999999988766553 5666533
No 79
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.15 E-value=0.0016 Score=64.34 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=47.4
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE--cCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW--THKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIV 152 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~--T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~ 152 (424)
+.+|++.|+||||+.+.|+++|+++||||.+..-. +..+...-.+.+.+. ....+ ..+.+++.|.++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~-~~~~~----~~~~l~~~l~~l 77 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ-SAEAA----SVDTFRQEFQPV 77 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcC-CCCCC----CHHHHHHHHHHH
Confidence 56899999999999999999999999999999987 444554444334431 11122 235667776553
No 80
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.06 E-value=0.0033 Score=48.86 Aligned_cols=35 Identities=26% Similarity=0.274 Sum_probs=32.9
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH 117 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~ 117 (424)
.|+|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999876
No 81
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.05 E-value=0.0049 Score=46.49 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=40.8
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-----CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-----KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-----~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
+.|..+|+||+|++|+.+|+++|+||.+...... .+.+...|.+.. .+.+.++.+.+.|
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l 64 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAAL 64 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHH
Confidence 4578899999999999999999999997776543 344444444433 1234555555554
No 82
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.03 E-value=0.0015 Score=64.50 Aligned_cols=66 Identities=14% Similarity=0.227 Sum_probs=46.1
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.+.+.|.++||||++++||++|+++|+||....-. .+...+.|+..-.-..|-. ...+.|+++|..
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~--~~~~~~~F~m~~~~~~p~~-~~~~~L~~~L~~ 72 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSF--DDRLSGRFFMRVEFHSEEG-LDEDALRAGFAP 72 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeee--ecCCCCeEEEEEEEecCCC-CCHHHHHHHHHH
Confidence 56899999999999999999999999999996554 4446667776433222211 124555555444
No 83
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.97 E-value=0.004 Score=61.26 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=50.5
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
+|++.|+||||+.+.|+++|+++||||.+...++. ++++.-.+.+.-+ +.++ ..+.+++.|.+++..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~--~~~~----~~~~l~~~l~~~~~~ 70 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE--GFRL----EESSLLAAFKSALAE 70 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC--CCCC----CHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998884 4777766666542 2123 136677777663443
No 84
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.96 E-value=0.0042 Score=46.53 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=37.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEE
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYV 346 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv 346 (424)
+.+.+.|++|+|++|+++|+++|++|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67899999999999999999999999999987764 445555655
No 85
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.95 E-value=0.0048 Score=55.47 Aligned_cols=66 Identities=18% Similarity=0.386 Sum_probs=50.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..|.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-. | ++..+++|.++|.+.+
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~-~---d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV-G---DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhcCc
Confidence 4689999999999999999999999999998887665444433433221 3 3568899999998843
No 86
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.94 E-value=0.0026 Score=46.43 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=39.6
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEec
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIED 129 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~d 129 (424)
|.+...|+||.|++++.+|.++|+||.+..+...+ +++.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999988855 77777777655
No 87
>PRK07431 aspartate kinase; Provisional
Probab=96.92 E-value=0.34 Score=52.69 Aligned_cols=217 Identities=16% Similarity=0.228 Sum_probs=124.5
Q ss_pred CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
.+...|.++|. ++||+++++..+|++.|++|.... |. + ..-.|.|.. +..++.-+.|++.+.-
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS-e-~~Is~vv~~----------~d~~~av~~Lh~~f~~ 411 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS-E-VKVSCVIDA----------EDGDKALRAVCEAFEL 411 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC-C-CEEEEEEcH----------HHHHHHHHHHHHHhcc
Confidence 45778999986 799999999999999999997655 32 2 222233432 1223444556665543
Q ss_pred CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEE-ecCChh
Q 014457 156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIK-CIDRPK 234 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~-~~DRpg 234 (424)
.... ..+. + + +.. .+. ..-+.|.. .++...|++. .++.||
T Consensus 412 ~~~~---~~~~---~----~----~~~--------~~~-------------~~v~gIa~----~~~~~~i~l~~~~~~~g 452 (587)
T PRK07431 412 EDSQ---IEIN---P----T----ASG--------QDE-------------PEVRGVAL----DRNQAQLAIRNVPDRPG 452 (587)
T ss_pred CCcc---cccC---c----c----ccC--------CCC-------------CcEEEEEc----cCCEEEEEECCCCCCcc
Confidence 2111 0010 0 0 000 000 01122222 2345666664 678899
Q ss_pred HHHHHHHHHHhCCceEEEEEEEe-eC--CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCC--------CceEE
Q 014457 235 LLFDTLCALTDLQYVVFHAAISS-KG--CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS--------HGLRL 303 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T-~~--~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~--------~~~~l 303 (424)
+++++...|+++|++|..-.... .+ |..--.|.+.. ....++.+.+++ +.++.+ .-..+
T Consensus 453 ~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~---------~~~~~~~~~l~~-l~~~~~~~~i~~~~~va~V 522 (587)
T PRK07431 453 MAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK---------EDREAAQKVLRE-LAKQLPGAEVEDGPAIAKV 522 (587)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH---------HHHHHHHHHHHH-HHHhcCCceEEEeCCeEEE
Confidence 99999999999999999875532 22 22223355522 222333333333 222221 24568
Q ss_pred EEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 304 EICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 304 ev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
.+.+. .+||+++++.++|.++|++|.... | ...+..++.+... .++.+..|.++|
T Consensus 523 SvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~---S~~~Is~vV~~~~---~~~av~~Lh~~f 580 (587)
T PRK07431 523 SIVGAGMPGTPGVAARMFRALADAGINIEMIA--T---SEIRTSCVVAEDD---GVKALQAVHQAF 580 (587)
T ss_pred EEECCCccCCcCHHHHHHHHHHHCCCcEEEee--c---cceEEEEEEeHHH---HHHHHHHHHHHh
Confidence 88776 889999999999999999997733 3 5556544444310 012455555554
No 88
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.89 E-value=0.0068 Score=45.68 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=41.7
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-----GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-----~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+.|.++|+||+|++++.+|++.|+||.+...... .+++.-.|.+.. .+...++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~------~~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET------RGAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence 3578899999999999999999999998776543 244433333322 122456666666654
No 89
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.89 E-value=0.0061 Score=48.04 Aligned_cols=65 Identities=11% Similarity=0.201 Sum_probs=47.8
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS 369 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~ 369 (424)
+.|.+...|+||+|++|+.+|+..|.||.+..+.-..+...-.+-++-. | ++..+++|.++|.+-
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~---~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C---TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C---CHHHHHHHHHHHhCC
Confidence 4688999999999999999999999999998876433433333333211 1 245778888888773
No 90
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.88 E-value=0.0032 Score=45.95 Aligned_cols=46 Identities=24% Similarity=0.372 Sum_probs=38.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEe
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMD 348 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d 348 (424)
+.+...|+||.|.+++..|.++|+||.+..+...+ +.+.-.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 46788999999999999999999999999887665 56666666643
No 91
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.84 E-value=0.0049 Score=46.38 Aligned_cols=62 Identities=16% Similarity=0.387 Sum_probs=44.2
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec-CCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN-GEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~-g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.|.+.+.|+||+|.+|+++|+++|++|.+....+. ++.....++..+. + + ..++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~-~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG---D-D-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC---C-H-HHHHHHHHHHhC
Confidence 47889999999999999999999999999988765 3333333333333 1 2 455666666554
No 92
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.0084 Score=45.94 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=36.4
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED 129 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d 129 (424)
.|.+.+.|+||+|++|+.+|+++|+||......+. ++..+.+.+++.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 47889999999999999999999999999887664 323344444444
No 93
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.81 E-value=0.018 Score=47.28 Aligned_cols=65 Identities=3% Similarity=0.021 Sum_probs=47.4
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
+...+.+...|+||+|.+|++.|+..||||.+..+.- .. +...-++.+ . + +...+.|.+.|++.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~--~-----~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N--D-----DQRLEQMISQIEKLE 73 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c--C-----chHHHHHHHHHhCCc
Confidence 3457999999999999999999999999999998864 33 333323323 1 1 146777888777654
No 94
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.79 E-value=0.0098 Score=45.88 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=38.4
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED 129 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d 129 (424)
.|.+.+.||||+|++|+.+|+++|+||......+ .++.+.-.|.+.-
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 5789999999999999999999999999987655 3455556666643
No 95
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=96.74 E-value=0.011 Score=45.93 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=43.7
Q ss_pred EEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 304 EICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 304 ev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
-+..+|+||-|++|..+|+++|+||.+.+-.... ....-.||| +..|.+ ++..++.+-+.|.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~i-d~~~~~-~~~~~~~~l~~l~~ 66 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFV-DFEGHI-DDPDVKEALEELKR 66 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE-EEECCC-CCHHHHHHHHHHHH
Confidence 4556899999999999999999999997655433 356678888 444542 23344444455544
No 96
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.73 E-value=0.0077 Score=46.79 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=42.5
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
.+.|.+.||+|+|++|+.++++.|+||.+..+.+. +...-.+.+ .+...++.+.+.|.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v--------~~~~~L~~li~~L~ 59 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPT--------IEFEKLQTLMPEIR 59 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEe--------cCHHHHHHHHHHHh
Confidence 47899999999999999999999999999998775 442222222 12245666666664
No 97
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.73 E-value=0.0073 Score=48.37 Aligned_cols=67 Identities=9% Similarity=0.197 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..|.+...|+||+|++|+..|...|+||.+..++...+...-.+-++-..| ++..++++.++|.+.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~---d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQ---DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCC---CHHHHHHHHHHHhCCc
Confidence 368889999999999999999999999999998866566555554433212 3457889999988854
No 98
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.73 E-value=0.0096 Score=47.67 Aligned_cols=64 Identities=16% Similarity=0.196 Sum_probs=47.4
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
.+.+...|+||.|+++++.|+..||||.+..+.. .. +...-++.+ ..| ++...+.|.+.|.+.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv--~~~----d~~~ieqI~kQL~Kli 69 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV--DIQ----DDTSLHILIKKLKQQI 69 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE--eCC----CHHHHHHHHHHHhCCc
Confidence 6889999999999999999999999999999965 33 333333333 112 3456778888877654
No 99
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.64 E-value=0.017 Score=44.23 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=42.8
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.|.+.+.|+||+|.+|+++|.++|++|......+..+ ......++++ ..+...++.+-+.|..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~----~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH----ETSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc----cCCHHHHHHHHHHHHc
Confidence 4788999999999999999999999999987765432 2222233333 2233455555555554
No 100
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.64 E-value=0.01 Score=48.67 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=52.6
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
...|.+-..|+||+|++|+-.|+..|.||.+..+.-.++...-.+.+.-. ++..++++.++|.+.+
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-----~~~~i~Qi~kQL~KLi 73 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-----DDQRLEQMISQIEKLE 73 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-----CchHHHHHHHHHhCCc
Confidence 46799999999999999999999999999998887666655555555332 2357899999988854
No 101
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.61 E-value=0.017 Score=43.33 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=36.7
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED 129 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d 129 (424)
.|.+.+.|+||+|++|+.+|+++|++|.+....+. ++....+.+..+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 47789999999999999999999999999988775 333333333333
No 102
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.58 E-value=0.013 Score=52.91 Aligned_cols=66 Identities=17% Similarity=0.414 Sum_probs=49.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..|.|...|+||.|++|+..|+++|+||.+..+....+...-.+.++-. | ++..++++.++|.+-+
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~-~---~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS-G---DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE-C---CHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999998776554333333333221 2 3567889999988843
No 103
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.02 Score=43.48 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=36.9
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC--CceeeEEEEE
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG--EKATGSFYVM 347 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g--~~a~d~Fyv~ 347 (424)
+.+.+..+|+||.|+++++.|+++|++|......... ....-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 4578899999999999999999999999988766552 2344455554
No 104
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.56 E-value=0.013 Score=46.10 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=46.4
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
..+.+...|+||+|+++++.|+..|+||.+..+. |.. +...-++.+ . | ++...+.|.+.|.+.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~-~--~----~~~~i~qi~kQL~KL 67 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA-V--C----TENEATLLVSQLKKL 67 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE-E--C----CHHHHHHHHHHHhCC
Confidence 3689999999999999999999999999999986 433 333333333 1 2 235677787777654
No 105
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.56 E-value=0.013 Score=43.89 Aligned_cols=33 Identities=12% Similarity=0.412 Sum_probs=30.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEee
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT 335 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T 335 (424)
|.+.+.|+||.|.+|++.|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 678899999999999999999999999987765
No 106
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.0094 Score=45.17 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=37.1
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEE
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYI 127 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V 127 (424)
..|.|..+|+||.|++|+.+|+++|+||.+..+...++. .++.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 357889999999999999999999999999998776654 44444
No 107
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.016 Score=44.62 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=45.1
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.+.|.++|+||++++|+.+|+++|+||......+. ++++.-.|.+...+. +..+++|.+.|++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhc
Confidence 57899999999999999999999999999877553 455555565533211 1255666666653
No 108
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.52 E-value=0.016 Score=45.71 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=46.1
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc--eeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK--ATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~--a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+.|.+...|+||.|++|+++|+..|.||.+..+.-..+. ..=++-+ . ++..+++|.++|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~------~~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A------SERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C------CCchHHHHHHHHhc
Confidence 578999999999999999999999999999888753322 2223333 2 23467788888777
No 109
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.51 E-value=0.0086 Score=44.77 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=39.1
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC--ceEEEEEEEec
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK--TRAACIFYIED 129 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~--~r~~dvf~V~d 129 (424)
+.+.+.|+||+|++|+.+|+++|+||.+......+ +...-.|.+.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 67899999999999999999999999999988854 66666676633
No 110
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.015 Score=56.09 Aligned_cols=66 Identities=24% Similarity=0.388 Sum_probs=47.2
Q ss_pred CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
...++++.|+|+||+.+.|++.|+++||||..+.-+|. .+++.--..... .+.+. ..+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence 45799999999999999999999999999999999873 445432222222 23332 23666666655
No 111
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.01 Score=44.19 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=34.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM 347 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~ 347 (424)
+.+..+||||-|++++.+|+++|+||.+.............+++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ 46 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFR 46 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEE
Confidence 678889999999999999999999999877644432233444443
No 112
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=96.40 E-value=0.019 Score=44.80 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=38.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCC-ceeeEEEEEeCCC
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGE-KATGSFYVMDASG 351 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~-~a~d~Fyv~d~~g 351 (424)
.|-+...|+||-|+++...|+++|+|+++.+-..... ...-.||| |-+|
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 3455668999999999999999999999977654443 35668888 5556
No 113
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.39 E-value=0.016 Score=52.93 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=48.1
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
..+.|.+.|+||+|+++++.|+.+|+||.+..+.. ..+... +.+.-+.+ +...+.|++.|++.+.
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr--~TIvv~~~-----~~~ieqL~kQL~KLid 69 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISR--ITMVVPGD-----DRTIEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccE--EEEEEECC-----HHHHHHHHHHHHHHhH
Confidence 37899999999999999999999999999999965 334442 33332221 2236788888877653
No 114
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.33 E-value=0.014 Score=44.52 Aligned_cols=57 Identities=23% Similarity=0.402 Sum_probs=39.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHH
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLK 363 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr 363 (424)
+-+...|+||.+++|+..|+++|++|.+...... ++.+.-.|.+ ++ +...+.++.|+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v---~~-~~~~~~~~~l~ 60 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV---DE-PVPDEVLEELR 60 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe---CC-CCCHHHHHHHH
Confidence 3468899999999999999999999998776543 3444444444 33 44334555554
No 115
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.20 E-value=0.0046 Score=46.80 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=34.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV 346 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv 346 (424)
+-+.+.|+||+|.+|+.+|.++|+||.+....+.++.+.-.|.+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 45689999999999999999999999887665544444444443
No 116
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.19 E-value=0.031 Score=50.29 Aligned_cols=63 Identities=16% Similarity=0.296 Sum_probs=46.6
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC--ceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK--TRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~--~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
.|.+...|+||.|++|+++|+..|+||.+--+...+ +...-+|.|.. ++...++|..+|.+.+
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence 688999999999999999999999999988777643 44444444432 2356677777775543
No 117
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.17 E-value=0.042 Score=41.65 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=36.5
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-c-eEEEEEEEe
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-T-RAACIFYIE 128 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~-r~~dvf~V~ 128 (424)
..+.+..+|+||-|++|+..|+++|+||.+....... + ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 3578899999999999999999999999988766642 2 333455554
No 118
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.013 Score=56.46 Aligned_cols=65 Identities=15% Similarity=0.316 Sum_probs=50.9
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC---CCCCCChHHHHHHHHHHHh
Q 014457 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA---SGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~---~g~~v~~~~~~~lr~~l~~ 368 (424)
..++|.++|+|++|+++.|+..|+++|.||..+.=- ++.....|+.+-. .+.|. ..++|++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf--~D~~~g~FFmR~~f~~~~~~~---~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQF--DDPETGRFFMRVEFEGEGGPL---DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccc--cccccCeEEEEEEEecCCCcc---cHHHHHHHHHH
Confidence 357899999999999999999999999999997654 6677888988664 34443 35666666655
No 119
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.16 E-value=0.033 Score=41.85 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN 336 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~ 336 (424)
.+.+.+.|+||.|++|++.|.+++++|......+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 47889999999999999999999999998877655
No 120
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.13 E-value=0.038 Score=49.91 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=47.4
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHH
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVV 153 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L 153 (424)
..|.+...|+||.|++|+++|+..|+||.+--+... .+...-+|.|.. |+..+++|..+|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 468999999999999999999999999988777653 344444454432 2456677877776543
No 121
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.12 E-value=0.026 Score=42.44 Aligned_cols=46 Identities=22% Similarity=0.465 Sum_probs=36.7
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEe
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIE 128 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~ 128 (424)
.|.+.++|+||.|++|+..|+++++||.+....+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887765 34444344443
No 122
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.08 E-value=0.045 Score=41.67 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=31.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
++.+.+..+|+||.|.+++++|.++|++|.+....
T Consensus 1 g~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 1 SSQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 45788999999999999999999999999987543
No 123
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.07 E-value=0.06 Score=42.34 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=39.9
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEec
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIED 129 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d 129 (424)
+.+.+..+|+||-|++|..+|+++|+||.+-..... ++...-+|+|.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 567788899999999999999999999998876663 455667888865
No 124
>PRK08577 hypothetical protein; Provisional
Probab=96.04 E-value=0.1 Score=45.58 Aligned_cols=67 Identities=15% Similarity=0.178 Sum_probs=47.6
Q ss_pred CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
.+..+.+.|.+.|+||+|++++.+|++++++|.+....+. ++.+.-.|.+.-.+. +..++.+.+.|.
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~~~L~ 121 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELEEELK 121 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHHHHHH
Confidence 3457899999999999999999999999999999888763 344544444432222 123455555554
No 125
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.01 E-value=0.033 Score=42.38 Aligned_cols=46 Identities=22% Similarity=0.423 Sum_probs=37.7
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEec
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIED 129 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d 129 (424)
+.+...|+||.+++|+.+|+++|+||.+..... .++...-+|.+.+
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 456899999999999999999999998887755 4567776776644
No 126
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.98 E-value=0.026 Score=42.22 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=35.4
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEe
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIE 128 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~ 128 (424)
|.+.+.|+||.|++|+.+|+++|++|.+...... ++.+.-.|.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 6789999999999999999999999998887663 34444444443
No 127
>PRK08577 hypothetical protein; Provisional
Probab=95.97 E-value=0.049 Score=47.65 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.3
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEE
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYI 127 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V 127 (424)
.+....+.|.+.+.|+||+|++|+.+|+++++||.+....+. ++.+...|.+
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~v 104 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIV 104 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEE
Confidence 455567899999999999999999999999999998887763 3434444433
No 128
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.87 E-value=0.066 Score=43.59 Aligned_cols=51 Identities=20% Similarity=0.383 Sum_probs=40.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCC
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGH 352 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~ 352 (424)
+.|-+...|+||-|+++...|+++|||+++.+-.... ..-.-.||| |.+|.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~ 66 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK 66 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 5677777999999999999999999999997766543 335568888 55565
No 129
>PRK11899 prephenate dehydratase; Provisional
Probab=95.85 E-value=0.037 Score=54.42 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=45.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHH
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRT 358 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~ 358 (424)
.+.|-+..+|+||.|+++..+|+++|||+++.+-.-.+ ..-.-.||| |..|..-++..
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~i-d~eg~~~d~~v 252 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYA-DIEGHPEDRNV 252 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEE-EEECCCCCHHH
Confidence 35677777899999999999999999999998877554 446779999 66686544333
No 130
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.83 E-value=0.023 Score=42.25 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=31.2
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK 118 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~ 118 (424)
+.+.-+|+||-|++++.+|+++|+||.+...+...
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 67888999999999999999999999988876643
No 131
>PRK04435 hypothetical protein; Provisional
Probab=95.81 E-value=0.07 Score=47.44 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=44.1
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED 129 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d 129 (424)
...+....|.+...|+||+|++|+.+|+++|+||..-.... .++.+.-.|-|..
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 34566788999999999999999999999999999887766 4566666666644
No 132
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.81 E-value=0.065 Score=36.88 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=32.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK 339 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~ 339 (424)
|.+.+.|++|++++|+.+|.++|++|...........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~ 37 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDG 37 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCC
Confidence 4678899999999999999999999999988765433
No 133
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.78 E-value=0.057 Score=41.48 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=30.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN 336 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~ 336 (424)
+.+..+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998765543
No 134
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=95.77 E-value=0.018 Score=43.53 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=36.2
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEe
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIE 128 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~ 128 (424)
|.+.+.|+||+|++|+.+|++.|+||......+.++.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 567899999999999999999999998877666555555555543
No 135
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.75 E-value=0.074 Score=38.62 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=35.5
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEe
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIE 128 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~ 128 (424)
|.+.+.|+||.+++|+..|.+++++|....+...+ +...-.|.+.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 46789999999999999999999999999887755 3333344443
No 136
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.71 E-value=0.015 Score=45.22 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=45.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCc--eeeEEEEEeCCCCCCCh-HHHHHHHHHHH
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEK--ATGSFYVMDASGHDVNQ-RTVELLKQEIG 367 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~--a~d~Fyv~d~~g~~v~~-~~~~~lr~~l~ 367 (424)
-+|+++.-||-.+||||-+|..+|+.|.+|+|.-+ +++ .+-.|.+.+. +.++.. ....++.+.+.
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~-~~~~~~~~~r~~i~drv~ 71 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH-DRLKLGGRQRSKVVDRVT 71 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC-CccccchHHHHHHHHHHH
Confidence 37999999999999999999999999999999743 344 4455666554 444442 23334444333
No 137
>PRK04435 hypothetical protein; Provisional
Probab=95.60 E-value=0.1 Score=46.46 Aligned_cols=69 Identities=14% Similarity=0.030 Sum_probs=49.9
Q ss_pred cCCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 217 CKEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 217 ~~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
........+.+...|+||+|++|..+|+++|+||....... .+|.+.-.|.|...+. +..++.|.+.|+
T Consensus 64 ~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~ 133 (147)
T PRK04435 64 MVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLR 133 (147)
T ss_pred cCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHH
Confidence 34456789999999999999999999999999999887655 3466655566633221 125566666654
No 138
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.53 E-value=0.11 Score=37.62 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=41.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc-eeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK-ATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
|.+.+.|+||++.+|+..|.+++++|....+...++. +.-.|.+.-. +...++.+.++|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR-----DLEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC-----CHHHHHHHHHHHhC
Confidence 4678999999999999999999999999988766522 2222323222 22355666655543
No 139
>PRK07431 aspartate kinase; Provisional
Probab=95.53 E-value=3 Score=45.31 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=66.6
Q ss_pred CeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--
Q 014457 221 GYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-- 295 (424)
Q Consensus 221 ~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-- 295 (424)
+...|.|.+. +.||++.++..+|.+.+++|.... + .+.. -.|.|.. ...++..+.|.+.+.-
T Consensus 347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~---------~d~~~av~~Lh~~f~~~~ 413 (587)
T PRK07431 347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDA---------EDGDKALRAVCEAFELED 413 (587)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcH---------HHHHHHHHHHHHHhccCC
Confidence 4667777774 799999999999999999997655 2 1221 2244422 3445566666666521
Q ss_pred ---c-------CC-----------CceEEEEE-eCCCCchHHHHHHHHHHCCceEEEE
Q 014457 296 ---R-------VS-----------HGLRLEIC-TQNRMGLLSDVTRAFRENGLSVSMA 331 (424)
Q Consensus 296 ---r-------~~-----------~~~~lev~-~~DrpGLL~~Itr~l~e~gl~I~~A 331 (424)
. .+ +-..+.|. ..+.+|++++|...|.++|++|...
T Consensus 414 ~~~~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i 471 (587)
T PRK07431 414 SQIEINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMI 471 (587)
T ss_pred cccccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 0 00 11234443 4688999999999999999999995
No 140
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.41 E-value=0.085 Score=40.49 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=29.8
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS 257 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T 257 (424)
+.|..+|+||-|++++..|+++|.||.+.....
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~ 34 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAF 34 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEecc
Confidence 578899999999999999999999999887654
No 141
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=95.40 E-value=0.11 Score=40.95 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=47.2
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
..+.+...|+||.|.++++.+...||||.+..+.- .++...-++.+ . + +...+.|.+.|.+.
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~------~~~i~ql~kQL~KL 67 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-S------ERPIDLLSSQLNKL 67 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-C------CchHHHHHHHHhcC
Confidence 47899999999999999999999999999999965 33455444555 2 2 23567777777654
No 142
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.27 E-value=0.11 Score=35.57 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.5
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG 259 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~ 259 (424)
|.+.++|+||++.+++++|.+.+++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46889999999999999999999999999987643
No 143
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.076 Score=41.56 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=39.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCC
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHD 353 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~ 353 (424)
|-+..+|+||-|+++...|.++|+|+.+.+-.... ....-.||| |.+|..
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~~ 53 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECDQ 53 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcCH
Confidence 44566899999999999999999999997766543 445678888 545654
No 144
>PRK07334 threonine dehydratase; Provisional
Probab=95.19 E-value=0.093 Score=54.29 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=48.1
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-----CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-----KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-----~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
.+.|+|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.- .|.++++.+...|++
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999988764 455444444432 234566766666644
No 145
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=95.12 E-value=0.084 Score=51.71 Aligned_cols=75 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhccC
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVNKS 376 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~~~ 376 (424)
.|.|-+..+|+||-|+++-.+|+.+|||+++.+-.-.+ ....-.||| |-.|..=++...++| ++|...-..+|--
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~~~~~v~~AL-~el~~~t~~~kil 269 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHIDDPLVKEAL-EELKEITEFVKIL 269 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCcCcHhHHHHH-HHHHhheeEEEEE
Confidence 57788888899999999999999999999998877444 457778888 666776543333333 4555533345543
No 146
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.10 E-value=0.065 Score=40.57 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=39.9
Q ss_pred CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhh
Q 014457 309 NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGS 369 (424)
Q Consensus 309 DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~ 369 (424)
|+||.|.+|+.+|+..|+||.+..+....+...-.+.++-. |. +..++.|.++|.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~-~~---~~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS-GD---DREIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE-S----CCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe-eC---chhHHHHHHHHhcc
Confidence 78999999999999999999999998755444444444322 21 23567788887763
No 147
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.96 E-value=0.75 Score=47.42 Aligned_cols=127 Identities=15% Similarity=0.219 Sum_probs=78.7
Q ss_pred CeEEEEEE---ecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457 221 GYSVVNIK---CIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R 296 (424)
Q Consensus 221 ~~tvV~V~---~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r 296 (424)
+...|+|. ..++||++.++..+|.+.+++|....... .+ ..-.|+|.. +..+++.+.|.+.+.. .
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~---------~d~~~a~~~L~~~~~~~~ 327 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDE---------TDADEAVRALKDQSGAAG 327 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeH---------HHHHHHHHHHHHHHHhcC
Confidence 56788888 57889999999999999999997553321 11 112355522 2234444455544311 1
Q ss_pred -----C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 297 -----V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 297 -----~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
. .+...+.|.+. ++||+++++.++|.++|++|.. ++ ....+..++.+.+. .++.++.|.++|
T Consensus 328 ~~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~--i~---~s~~~is~vv~~~d---~~~av~~Lh~~f 398 (401)
T TIGR00656 328 LDRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM--IG---SSETNISFLVDEKD---AEKAVRKLHEVF 398 (401)
T ss_pred CceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE--EE---cCCCEEEEEEeHHH---HHHHHHHHHHHH
Confidence 1 12356667665 7899999999999999999986 43 23445433434310 013556666655
No 148
>PRK06635 aspartate kinase; Reviewed
Probab=94.66 E-value=0.69 Score=47.73 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=68.5
Q ss_pred CeEEEEEE-ecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH---Hh-
Q 014457 221 GYSVVNIK-CIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA---IE- 294 (424)
Q Consensus 221 ~~tvV~V~-~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a---l~- 294 (424)
+...|+|. ..++||.+.++..+|.+.|++|....... .+++..-.|.|.. +..++..+.|.+. +.
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~---------~~~~~a~~~L~~~~~~~~~ 331 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR---------DDLEKALELLEEVKDEIGA 331 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH---------HHHHHHHHHHHHHHHHcCc
Confidence 45566665 47899999999999999999999754432 2224444555522 2333444445442 11
Q ss_pred hcC---CCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEE
Q 014457 295 RRV---SHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMA 331 (424)
Q Consensus 295 rr~---~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A 331 (424)
+.. .+-..+.|.+ .|+||.+++|.++|.++|++|...
T Consensus 332 ~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 332 ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 001 1245678865 699999999999999999999884
No 149
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=94.64 E-value=0.13 Score=52.93 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=51.3
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEee-cCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT-NGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN 374 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T-~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 374 (424)
.+.|-+..+|+||.|+++...|+.+|||+++.+-.- .+..-.-.||| |..|..-++.. +..-++|......+|
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffi-d~eg~~~d~~~-~~aL~~l~~~~~~~k 370 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYL-DVQANLRSAEM-QKALKELGEITRSLK 370 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEE-EEeCCCCCHHH-HHHHHHHHHhcCcEE
Confidence 456667778999999999999999999999988774 44557889999 66676544333 333334444333344
No 150
>PRK07334 threonine dehydratase; Provisional
Probab=94.53 E-value=0.18 Score=52.10 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=48.6
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-----GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-----~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+.+.|.+.||||+|.+|+.+|++.++||.+....+. ++.+.-.|.|. +.+.+.++.|.+.|++
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998764 45554444442 2233567778777765
No 151
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.40 E-value=0.45 Score=38.69 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 219 EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 219 ~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
..+.+-+.+..+|+||-|+++-..|++.|+|+.+-...- .+..-.-.||| +.+|. . + ...+.+.+.|.+.|.
T Consensus 11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfV-Dieg~-~-~-~~~~~~l~~L~~~~~ 83 (90)
T cd04931 11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFI-NLDKK-S-A-PALDPIIKSLRNDIG 83 (90)
T ss_pred CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC-C-C-HHHHHHHHHHHHHhC
Confidence 334566667779999999999999999999999876643 22222335777 55664 2 3 345555566655543
No 152
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.31 E-value=0.15 Score=38.63 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=38.5
Q ss_pred CcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 90 DRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 90 DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
|+||.|.+|+++|...|+||.+-.+.. .++...-.+.+.. +. ...+.|..+|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence 789999999999999999999988887 4555555555544 22 244666666654
No 153
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.19 E-value=0.22 Score=42.46 Aligned_cols=53 Identities=13% Similarity=0.120 Sum_probs=41.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc-eeeEEEEEeCCCCC
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK-ATGSFYVMDASGHD 353 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~Fyv~d~~g~~ 353 (424)
.+.|-+..+|+||-|++|...|+++|||+++.+-...... -.-.||| |..|.+
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~~ 94 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVHR 94 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeCH
Confidence 3567777799999999999999999999999776655444 4557888 555643
No 154
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.98 E-value=0.28 Score=54.47 Aligned_cols=74 Identities=19% Similarity=0.068 Sum_probs=52.9
Q ss_pred EEEeecCC-CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEeecCCCCCCCHHHHHHHHHH
Q 014457 212 VLIDSCKE-KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK--GCFADQEYFIRQTDGCTLDTESQRQKLTQC 288 (424)
Q Consensus 212 V~v~~~~~-~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~--~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~ 288 (424)
|.|..... .-...|.|.+.||+|+|.+|+.+|+++++||....+.+. ++.+.-.|.|.- .+-..+.+|...
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~ 728 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGK 728 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence 45643212 233588899999999999999999999999999999874 466666666532 223466777666
Q ss_pred HHH
Q 014457 289 LIA 291 (424)
Q Consensus 289 L~~ 291 (424)
|.+
T Consensus 729 L~~ 731 (743)
T PRK10872 729 LNQ 731 (743)
T ss_pred Hhc
Confidence 653
No 155
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.92 E-value=0.29 Score=37.09 Aligned_cols=47 Identities=21% Similarity=0.526 Sum_probs=36.5
Q ss_pred EEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEe
Q 014457 82 TALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIE 128 (424)
Q Consensus 82 t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~ 128 (424)
+.+.+..+|+||.|++++.+|+++|+||.+....- .++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57888999999999999999999999999775443 234445555553
No 156
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.65 E-value=0.065 Score=42.92 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=42.3
Q ss_pred EEEEEeCC-cchHHHHHHHHHHHcCceEeeEEEEc---------CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 83 ALEVTGVD-RPGLMSEISAVLYELGCHVPAAVAWT---------HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 83 ~iev~~~D-RpGLLs~I~~vL~~~~~~I~~A~i~T---------~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
.|+|.|+| ++|.+++|+++|+++|+||.+-+--+ ...+..-.|.|+.+ + .+. +.++..|..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~----~-~~~---~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQ----P-ADL---EALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCC----C-CCH---HHHHHHHHH
Confidence 37899999 99999999999999999997544321 11345556667653 2 233 566677654
No 157
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.31 E-value=0.18 Score=39.33 Aligned_cols=69 Identities=19% Similarity=0.245 Sum_probs=49.8
Q ss_pred EEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEE--EEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 84 LEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACI--FYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 84 iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dv--f~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
+|+.|+-||-.|++++-+|..+++-|.+|+|.-| +++-.-+ |.+.+ .+..+..+....+|.+++.+.|.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e--~~~~~~~~~~r~~i~drv~~~lm 75 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE--HDRLKLGGRQRSKVVDRVTKTLM 75 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC--CCccccchHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999763 4443333 33444 34445544445677777666554
No 158
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.31 E-value=0.71 Score=35.56 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=41.7
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+.+..+|+||-|+++...|+++|+||.+-...- .+....-.|||. .+|.. .+ ...+.+.+.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id-~~~~~-~~-~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVD-FEGHI-DD-PDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEE-EECCC-CC-HHHHHHHHHHHH
Confidence 345568999999999999999999999985443 232333457774 34431 12 345555555554
No 159
>PRK08210 aspartate kinase I; Reviewed
Probab=93.19 E-value=2.5 Score=43.72 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=65.1
Q ss_pred CeEEEEEEecCC-hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cC
Q 014457 221 GYSVVNIKCIDR-PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RV 297 (424)
Q Consensus 221 ~~tvV~V~~~DR-pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~ 297 (424)
+-..|+|...+. ||.+++|...|++.|+||.....+. .. -.|++.. +..+++.+.|++. .. ..
T Consensus 270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~~--is~~v~~---------~~~~~a~~~l~~~-~~~v~~ 335 (403)
T PRK08210 270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--TE--VVFTVSD---------EDSEKAKEILENL-GLKPSV 335 (403)
T ss_pred CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--ce--EEEEEcH---------HHHHHHHHHHHHh-CCcEEE
Confidence 456777776555 9999999999999999999874442 11 2355521 2234444444432 11 11
Q ss_pred -CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEE
Q 014457 298 -SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSM 330 (424)
Q Consensus 298 -~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~ 330 (424)
.+...+.|.+. ++||+++++.++|.+.|++|..
T Consensus 336 ~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 336 RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 23456667665 8999999999999999999975
No 160
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.15 E-value=0.46 Score=36.10 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=38.2
Q ss_pred EEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 226 NIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 226 ~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.|.-+||||-|.+++..|+. |.||.+..-...+.....+++.....+ ++..+.+.+.|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHH
Confidence 57789999999999999999 999998655432211112222222222 2456666666654
No 161
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.14 E-value=0.32 Score=53.84 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=46.8
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC-ceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK-TRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~-~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
.+.|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.- .+.+.+..|-..|
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~L 688 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKI 688 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 36799999999999999999999999999999988754 45444444432 2345666655555
No 162
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.10 E-value=0.47 Score=52.57 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=51.5
Q ss_pred EEEeecCC-CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHH
Q 014457 212 VLIDSCKE-KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCL 289 (424)
Q Consensus 212 V~v~~~~~-~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L 289 (424)
|.|+.... .-.+.|.|.+.||+|+|.+|+.+++.+++||.+..+.+.+ +.+.-.|.|.- .+-..+++|...|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L 688 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI 688 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence 45643322 2345788999999999999999999999999999987754 56555555522 2224667776666
Q ss_pred H
Q 014457 290 I 290 (424)
Q Consensus 290 ~ 290 (424)
.
T Consensus 689 r 689 (702)
T PRK11092 689 R 689 (702)
T ss_pred h
Confidence 5
No 163
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=93.09 E-value=0.39 Score=53.33 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=47.8
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC--CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH--KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~--~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
...|.|.+.||+|||++|+.++++.++||.+..+.+. ++.+...|.|.- .|.+.+.+|-..|
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L 729 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKL 729 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 3579999999999999999999999999999998874 566555555532 2345666666555
No 164
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=92.98 E-value=0.48 Score=44.54 Aligned_cols=60 Identities=8% Similarity=0.197 Sum_probs=45.7
Q ss_pred CCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHH
Q 014457 298 SHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVEL 361 (424)
Q Consensus 298 ~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~ 361 (424)
+++..|-+.-.||||.+..|+.+|.++|+||....+.-. |+.|.-+.-| ..+++++.+++
T Consensus 146 ~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v----D~~v~~~vl~~ 207 (208)
T TIGR00719 146 GEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI----DKNIDDHIKDA 207 (208)
T ss_pred CCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe----CCCCCHHHHhh
Confidence 346678888999999999999999999999999999765 3445544444 33666666654
No 165
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.43 E-value=0.68 Score=51.28 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=47.5
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
.+.|.|.+.||+|+|++|+.+|+.+++||.+.++.+. ++.+.-.|.|.- .+-..+.+|...|.
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKIK 673 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHh
Confidence 4588899999999999999999999999999999875 455544454422 22246666666664
No 166
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=92.41 E-value=0.68 Score=35.03 Aligned_cols=35 Identities=14% Similarity=0.276 Sum_probs=30.5
Q ss_pred CCeEEEEEEec----CChhHHHHHHHHHHhCCceEEEEE
Q 014457 220 KGYSVVNIKCI----DRPKLLFDTLCALTDLQYVVFHAA 254 (424)
Q Consensus 220 ~~~tvV~V~~~----DRpgLL~~i~~~L~~~gl~I~~A~ 254 (424)
.+...|+|.++ |.||+++++...|++.|++|+...
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45778999888 799999999999999999998776
No 167
>PRK06291 aspartate kinase; Provisional
Probab=92.35 E-value=3.2 Score=43.85 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=81.6
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER- 295 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r- 295 (424)
++...|+|.+. +.||+++++..+|++.|++|......+.. .--.|.|.. +..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~---------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE---------ADLEKALKALRREFGEG 387 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH---------HHHHHHHHHHHHHHHHh
Confidence 35678888764 78999999999999999999875433322 112355522 1233334445444331
Q ss_pred ---c---CCCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 296 ---R---VSHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 296 ---r---~~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
. ..+...|.|.+. +++|+++++..+|.+.|++|...- +|....+..++.+... .++.++.|.++|
T Consensus 388 ~~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is---qgsSe~~Is~vV~~~d---~~~av~~Lh~~f 461 (465)
T PRK06291 388 LVRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS---QGSSEVNISFVVDEED---GERAVKVLHDEF 461 (465)
T ss_pred cCcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE---eccccCeEEEEEeHHH---HHHHHHHHHHHh
Confidence 1 123467888776 799999999999999999998632 3445555544444321 123455555554
No 168
>PRK14630 hypothetical protein; Provisional
Probab=92.34 E-value=1.5 Score=38.85 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=64.9
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 014457 231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNR 310 (424)
Q Consensus 231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~Dr 310 (424)
|.-.+-..+..++..+||.+.+......++..+-..||...+|-.+ +.++.+-+.+...++.-.+..|.|||+++.=
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gV~i---dDC~~vSr~i~~~ld~~i~~~Y~LEVSSPGl 82 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDSFGV---DTLCDLHKMILLILEAVLKYNFSLEISTPGI 82 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccCCCCeEEEEeCCCC
Confidence 4556667788899999999999998876654444566755555333 6799999999888876556789999998733
Q ss_pred CchHHHHHHHHHHCC
Q 014457 311 MGLLSDVTRAFRENG 325 (424)
Q Consensus 311 pGLL~~Itr~l~e~g 325 (424)
---|...-.+-+-.|
T Consensus 83 dRpL~~~~df~r~~G 97 (143)
T PRK14630 83 NRKIKSDREFKIFEG 97 (143)
T ss_pred CCcCCCHHHHHHhCC
Confidence 333555455555544
No 169
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.27 E-value=0.59 Score=42.16 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=37.4
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEe
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIE 128 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~ 128 (424)
.+.+.+.++||.|.+++++++++|.||..|+.+. +|+.+.--|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 5788899999999999999999999999999988 334444444443
No 170
>PRK06635 aspartate kinase; Reviewed
Probab=92.12 E-value=8.7 Score=39.60 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.3
Q ss_pred CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEE
Q 014457 221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHA 253 (424)
Q Consensus 221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A 253 (424)
+...+.|.+ ++.||.++++..+|++.|+||...
T Consensus 339 ~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 339 DIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 456777765 689999999999999999999874
No 171
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=92.04 E-value=7.3 Score=41.03 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=76.6
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER- 295 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r- 295 (424)
++.+.|+|... ..+|.++++...|.+.|++|..-........ -.|++... ...+..+.|.+.+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~---------~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPES---------DAPRALRALLEEKLEL 373 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchh---------hHHHHHHHHHHHHhhh
Confidence 46678888754 3459999999999999999987544321112 34666321 222333333333221
Q ss_pred --c--CCC-ceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEEEeecCCceee-EEEEEeCCCCCCChHHHHHHHHHH
Q 014457 296 --R--VSH-GLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATG-SFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 296 --r--~~~-~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d-~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
+ ..+ --.+.+.+ ...||+.+.+..+|++.++||.... ..... +|.|...+ ..+.++.|.++|
T Consensus 374 ~~~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is-----sSe~~Is~vV~~~~----~~~av~~LH~~~ 444 (447)
T COG0527 374 LAEVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS-----SSEISISFVVDEKD----AEKAVRALHEAF 444 (447)
T ss_pred cceEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE-----cCCceEEEEEccHH----HHHHHHHHHHHH
Confidence 1 111 23455554 4779999999999999999999944 33334 45452221 123566666655
Q ss_pred H
Q 014457 367 G 367 (424)
Q Consensus 367 ~ 367 (424)
.
T Consensus 445 ~ 445 (447)
T COG0527 445 F 445 (447)
T ss_pred h
Confidence 3
No 172
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=92.00 E-value=0.29 Score=50.88 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=48.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHH
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLK 363 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr 363 (424)
..+|-+.-.|+||.++.|+.+|.++|+||..-++...|+.|.-+|-+ ++ ++.++.+++|+
T Consensus 338 ~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~-~~~~~~~~~i~ 397 (409)
T PRK11790 338 GHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DA-DYAEEALDALK 397 (409)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CC-CCcHHHHHHHH
Confidence 47888899999999999999999999999999998888777666644 33 44555666665
No 173
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.99 E-value=0.54 Score=51.68 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=48.7
Q ss_pred CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
.-...|.|.+.||+|||++|+.+|+..++||.+...-+.+++.+.+.+--. +.+...+.+|-.+|
T Consensus 625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l 689 (701)
T COG0317 625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARL 689 (701)
T ss_pred ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHH
Confidence 445789999999999999999999999999999988886566555443221 33445666665555
No 174
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=91.76 E-value=0.61 Score=51.61 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=46.6
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcC-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTH-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQL 149 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L 149 (424)
.+.|.|.+.||+|+|++|+.+++..++||.+..+.+. ++.+.-.|.|.= .+.+.+..|-..|
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L 672 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKI 672 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence 4679999999999999999999999999999999885 455444444432 2345666655555
No 175
>PLN02317 arogenate dehydratase
Probab=91.75 E-value=0.71 Score=47.36 Aligned_cols=67 Identities=13% Similarity=0.165 Sum_probs=47.4
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc---------------eeeEEEEEeCCCCCCChHHHHHHHH
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK---------------ATGSFYVMDASGHDVNQRTVELLKQ 364 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~---------------a~d~Fyv~d~~g~~v~~~~~~~lr~ 364 (424)
.|.|-+.-+|+||.|+++..+|+.+|||+++.+-.-...+ -.-.||| |-+|..-++.. +..-+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyV-D~eg~~~d~~~-~~aL~ 360 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYV-DFEASMADPRA-QNALA 360 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEE-EEEcCcCCHHH-HHHHH
Confidence 3667777789999999999999999999999877654433 3458999 55676544333 33334
Q ss_pred HHHh
Q 014457 365 EIGG 368 (424)
Q Consensus 365 ~l~~ 368 (424)
+|.+
T Consensus 361 ~L~~ 364 (382)
T PLN02317 361 HLQE 364 (382)
T ss_pred HHHH
Confidence 4444
No 176
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.70 E-value=0.7 Score=34.98 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=36.5
Q ss_pred CCcEEEEEEeC----CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 79 TENTALEVTGV----DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 79 ~~~t~iev~~~----DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
.++..|.|.++ |.||++++++..|++.|+||.... |. ..+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence 45678888888 899999999999999999998776 33 356677765
No 177
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=91.57 E-value=1.1 Score=34.78 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=34.5
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCC
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDG 273 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g 273 (424)
+.+..+|+||-|+++-..|+..|+|+.+-...- .+....-.||| +.+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffv-d~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFV-DCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEE-EEEc
Confidence 444558999999999999999999999866543 22333345777 5455
No 178
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=0.65 Score=35.26 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=41.5
Q ss_pred EEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 304 EICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 304 ev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.|.-+||||=|.++++++.+ |.||....-.-.+.....++..-... +.+.++.+.++|.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP----DREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC----CHHHHHHHHHHHHH
Confidence 56789999999999999999 99999876655443344455443332 23466666666554
No 179
>PRK09034 aspartate kinase; Reviewed
Probab=90.87 E-value=6.3 Score=41.52 Aligned_cols=104 Identities=14% Similarity=0.231 Sum_probs=66.8
Q ss_pred CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457 221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R 296 (424)
Q Consensus 221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r 296 (424)
+.+.|++.+ .++||+++++...|++.|++|.... .+..--.|+|...+ +.. ..+..+.+.|+..+.- .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~----ss~~sis~~v~~~~---~~~-a~~~~l~~el~~~~~~~~ 378 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMP----SGIDDLSIIIRERQ---LTP-KKEDEILAEIKQELNPDE 378 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEc----CCCcEEEEEEeHHH---hhH-HHHHHHHHHHHHhhCCce
Confidence 456777774 6789999999999999999999852 22222346664321 100 0113333333322210 0
Q ss_pred --C-CCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEE
Q 014457 297 --V-SHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 297 --~-~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
. .+-..|.+.+ .++||+++++..+|.++|++|....
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIs 420 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMIN 420 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 1 1245677754 3889999999999999999999854
No 180
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.71 E-value=1.6 Score=34.03 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=35.8
Q ss_pred EEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCC
Q 014457 225 VNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGC 274 (424)
Q Consensus 225 V~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~ 274 (424)
+.+..+|+||-|+++-..|+..|+|+.+-...- .+....-.||| +.+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~i-d~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFV-DCECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEE-EEEcC
Confidence 344558999999999999999999999877654 23333345777 44554
No 181
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.61 E-value=1.2 Score=46.53 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=47.8
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.+.|.+...|+||.|++|+.+|.++|++|.+..-....+.....+++++.. +...++++.++|.+
T Consensus 348 ~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~~----~e~~l~~~i~~L~~ 412 (426)
T PRK06349 348 KYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHET----SEAALRAALAAIEA 412 (426)
T ss_pred eEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEeC----CHHHHHHHHHHHhc
Confidence 478888999999999999999999999999876544333456777787642 23445555555554
No 182
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.57 E-value=6.6 Score=44.56 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=68.6
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH---
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI--- 293 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al--- 293 (424)
++.+.|+|.+. ++||++.++..+|.+.|++|......+ .+. --.|.|.. ...++..+.|.+.+
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~-sIsf~V~~---------~d~~~av~~L~~~f~~e 381 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEY-SISFCVPQ---------SDAAKAKRALEEEFALE 381 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCc-eEEEEEeH---------HHHHHHHHHHHHHHHHH
Confidence 46778888764 789999999999999999997664433 121 12355533 12333334444433
Q ss_pred -hh-cC------CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEE
Q 014457 294 -ER-RV------SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMA 331 (424)
Q Consensus 294 -~r-r~------~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A 331 (424)
.. .. .+...|.|.+. ++||+++++..+|.+.|++|...
T Consensus 382 l~~~~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~I 430 (819)
T PRK09436 382 LKEGLLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAI 430 (819)
T ss_pred hccCCcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 11 11 23456777776 78999999999999999999874
No 183
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=90.45 E-value=1.1 Score=42.25 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=43.4
Q ss_pred CCCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEec
Q 014457 76 HVSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIED 129 (424)
Q Consensus 76 ~~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~d 129 (424)
+...+...+-+.-.||||.+..|+.+|.++++||...++.. .++.+.-++-|..
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~ 198 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK 198 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence 34455567777889999999999999999999999999987 4677666666543
No 184
>PRK14646 hypothetical protein; Provisional
Probab=90.42 E-value=3.4 Score=37.11 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCC
Q 014457 233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQNR 310 (424)
Q Consensus 233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~Dr 310 (424)
..+...+..++..+||.+.+..+...++..+-..||..++|..++- +.++.+-+.|.+.|.. -.+..|.|||+++.=
T Consensus 7 ~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtl-dDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl 85 (155)
T PRK14646 7 SKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISL-DDCALFNTPASEEIENSNLLNCSYVLEISSQGV 85 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccH-HHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC
Confidence 3566778889999999999999998776444466775554544433 5899999999998864 356789999998844
Q ss_pred CchHHHHHHHHHHCCceE
Q 014457 311 MGLLSDVTRAFRENGLSV 328 (424)
Q Consensus 311 pGLL~~Itr~l~e~gl~I 328 (424)
---|..--.+-+-.|=.|
T Consensus 86 dRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 86 SDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCcCCCHHHHHHhCCCEE
Confidence 444666666666666544
No 185
>PRK08818 prephenate dehydrogenase; Provisional
Probab=90.32 E-value=0.62 Score=47.76 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=38.8
Q ss_pred ceEEEEEeC-CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457 300 GLRLEICTQ-NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349 (424)
Q Consensus 300 ~~~lev~~~-DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~ 349 (424)
.+.|-+.-+ |+||.|++|+.+|.++||||++.++ .........|||.-.
T Consensus 295 ~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~ 344 (370)
T PRK08818 295 PLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFE 344 (370)
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEe
Confidence 456777776 9999999999999999999999998 444444444999554
No 186
>PLN02551 aspartokinase
Probab=90.26 E-value=4.8 Score=43.20 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH---HH
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA---AI 293 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~---al 293 (424)
++.+.|+|.+. +.||.++++...|.+.|++|.... +. + .--.|.|...+-. ..+.+++.|.+ .+
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~~~~~------~~~~i~~~l~~l~~el 433 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDPSKLW------SRELIQQELDHLVEEL 433 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEehhHhh------hhhhHHHHHHHHHHHh
Confidence 45678888765 689999999999999999999873 22 1 1123666432211 12223323322 22
Q ss_pred hh--cC---CCceEEEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 294 ER--RV---SHGLRLEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 294 ~r--r~---~~~~~lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
++ ++ .+..+|.|.+. .++|+++++-.+|.++|++|.... +|....+.-+|.+.... .+.++.|.++|
T Consensus 434 ~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV~~~d~---~~Av~aLH~~F 507 (521)
T PLN02551 434 EKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIVNDDEA---EQCVRALHSAF 507 (521)
T ss_pred hcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEEeHHHH---HHHHHHHHHHH
Confidence 21 11 12456666654 689999999999999999998843 34455665455454200 12455555555
Q ss_pred H
Q 014457 367 G 367 (424)
Q Consensus 367 ~ 367 (424)
.
T Consensus 508 f 508 (521)
T PLN02551 508 F 508 (521)
T ss_pred h
Confidence 3
No 187
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.19 E-value=2.2 Score=33.98 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=37.2
Q ss_pred EEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 224 VVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 224 vV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
++.|.-+|+||-|.+++.+|+ +.||.+..-... .+.+.-.+.+...+| .+..+.+.+.|++
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence 678899999999999999999 666664443321 133322233322221 2456666666654
No 188
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.12 E-value=1.4 Score=48.54 Aligned_cols=74 Identities=19% Similarity=0.139 Sum_probs=51.6
Q ss_pred EEEEeecC-CCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCCCCCCHHHHHHHHHH
Q 014457 211 HVLIDSCK-EKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGCTLDTESQRQKLTQC 288 (424)
Q Consensus 211 ~V~v~~~~-~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~ 288 (424)
.|.|+... ..-...|.|.+.||+|+|.+|+.+|+.++.||.+....+. ++.+.-.|-+.- .+-..+.+|...
T Consensus 615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~ 688 (701)
T COG0317 615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLAR 688 (701)
T ss_pred EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHH
Confidence 34555553 3344588899999999999999999999999999998874 445544444422 222456666666
Q ss_pred HH
Q 014457 289 LI 290 (424)
Q Consensus 289 L~ 290 (424)
|.
T Consensus 689 l~ 690 (701)
T COG0317 689 LK 690 (701)
T ss_pred Hh
Confidence 54
No 189
>PRK14634 hypothetical protein; Provisional
Probab=89.81 E-value=3.5 Score=36.99 Aligned_cols=94 Identities=15% Similarity=0.096 Sum_probs=65.7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCC
Q 014457 232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQN 309 (424)
Q Consensus 232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D 309 (424)
.+.+-..+..++..+|+.+.+..+...++..+-..||..++|..++- +.++.+-+.|.+.|... .+..|.|||+++.
T Consensus 6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 84 (155)
T PRK14634 6 LPDLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSL-DDCAGFSGPMGEALEASQLLTEAYVLEISSPG 84 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccH-HHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 34566677788999999999999988766444456776566743433 58999999999888643 4568999999873
Q ss_pred CCchHHHHHHHHHHCCc
Q 014457 310 RMGLLSDVTRAFRENGL 326 (424)
Q Consensus 310 rpGLL~~Itr~l~e~gl 326 (424)
=---|..--.+-+-.|=
T Consensus 85 ldRpL~~~~~f~r~~G~ 101 (155)
T PRK14634 85 IGDQLSSDRDFQTFRGF 101 (155)
T ss_pred CCCcCCCHHHHHHhCCC
Confidence 33335555555555553
No 190
>PRK14636 hypothetical protein; Provisional
Probab=89.77 E-value=3.6 Score=37.72 Aligned_cols=95 Identities=14% Similarity=0.044 Sum_probs=65.3
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeC
Q 014457 231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQ 308 (424)
Q Consensus 231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~ 308 (424)
|.+.+...+..++..+|+.+....+...++..+-..||..++|..++- +.++.+-+.|.+.|... .+..|.|||+++
T Consensus 3 ~~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~l-DDC~~vSr~Is~~LD~~d~i~~~Y~LEVSSP 81 (176)
T PRK14636 3 DIAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVI-EDCAALSRRLSDVFDELDPIEDAYRLEVSSP 81 (176)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhccCcCCCCCeEEEEeCC
Confidence 345566778889999999999999988765444456675554333432 58999999999988643 467899999988
Q ss_pred CCCchHHHHHHHHHHCCc
Q 014457 309 NRMGLLSDVTRAFRENGL 326 (424)
Q Consensus 309 DrpGLL~~Itr~l~e~gl 326 (424)
-=---|..--.+-+-.|=
T Consensus 82 GldRpL~~~~df~r~~G~ 99 (176)
T PRK14636 82 GIDRPLTRPKDFADWAGH 99 (176)
T ss_pred CCCCCCCCHHHHHHhCCC
Confidence 333335554455455443
No 191
>PRK14645 hypothetical protein; Provisional
Probab=89.42 E-value=4.9 Score=36.03 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCC
Q 014457 232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQN 309 (424)
Q Consensus 232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~D 309 (424)
...+-..+..++..+||.+.+..+...++..+-..||...+|..++- +.++.+-+.|.+.|... .+..|.|||+++.
T Consensus 8 ~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG 86 (154)
T PRK14645 8 NPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTV-EDLERASRALEAELDRLDPIEGEYRLEVESPG 86 (154)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCH-HHHHHHHHHHHHHhcccccCCCceEEEEeCCC
Confidence 34566777889999999999999988765444455664444544443 58999999999988643 4568899999884
Q ss_pred CCchHHHHHHHHHHCCc
Q 014457 310 RMGLLSDVTRAFRENGL 326 (424)
Q Consensus 310 rpGLL~~Itr~l~e~gl 326 (424)
----|...-.+-+-.|-
T Consensus 87 ldRpL~~~~df~r~~G~ 103 (154)
T PRK14645 87 PKRPLFTARHFERFAGL 103 (154)
T ss_pred CCCCCCCHHHHHHhCCC
Confidence 44446666666666663
No 192
>PRK06382 threonine dehydratase; Provisional
Probab=89.19 E-value=2.1 Score=44.43 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE----c-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW----T-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE 150 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~----T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~ 150 (424)
.....+.++|.-+|+||-|++|+.+|.++|+||.+-... . ..+...-+|.|... +++..+.|.+.|.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-------~~~~~~~v~~~L~ 397 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-------GQDHLDRILNALR 397 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 355678999999999999999999999999999877664 2 34556666666541 2334445555553
No 193
>PRK06382 threonine dehydratase; Provisional
Probab=89.02 E-value=0.97 Score=46.84 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 283 QKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 283 ~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
..+.+.+...+. ...+.+++.|.-+|+||-|.+|+++|.++|+||.+....
T Consensus 314 ~~~~~~~~~~~~-~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 314 LLMSKIIYKELE-NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred HHHHHHHHHHHH-hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 345555554432 112356899999999999999999999999999987663
No 194
>PRK09181 aspartate kinase; Validated
Probab=88.84 E-value=8.5 Score=40.85 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=74.5
Q ss_pred CeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-c
Q 014457 221 GYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER-R 296 (424)
Q Consensus 221 ~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r-r 296 (424)
+.+.|+|.+. +.||++.++...|.+.+++|.. +.+.. .--.|.|... ....+++.+.|++.+.. .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~--i~ss~--~sis~~v~~~-------~~~~~~~~~~L~~~~~~~~ 396 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYIS--KATNA--NTITHYLWGS-------LKTLKRVIAELEKRYPNAE 396 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEE--EEecC--cEEEEEEcCC-------hHHHHHHHHHHHHhcCCce
Confidence 5677888654 7899999999999999999983 33321 2234666331 12345555555543321 1
Q ss_pred --CCCceEEEEEeCC--CCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457 297 --VSHGLRLEICTQN--RMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD 348 (424)
Q Consensus 297 --~~~~~~lev~~~D--rpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d 348 (424)
..+-.+|.|.+.. +||+.+++..+|.+.|++|.... .|....+.-.+.+
T Consensus 397 i~~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~---qg~se~~Is~vV~ 449 (475)
T PRK09181 397 VTVRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH---QSMRQVNMQFVVD 449 (475)
T ss_pred EEECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE---ecCCcceEEEEEe
Confidence 2334677777764 89999999999999999998733 3444555544434
No 195
>PRK06545 prephenate dehydrogenase; Validated
Probab=88.72 E-value=1.7 Score=44.22 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=43.0
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349 (424)
Q Consensus 299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~ 349 (424)
..+.|.|.-+||||-|+.|+..|.+.|+||.+.+|.-..+....+..++-.
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~ 339 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFK 339 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeC
Confidence 358899999999999999999999999999999997666666666666443
No 196
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=88.69 E-value=0.31 Score=39.01 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=42.2
Q ss_pred EEEEEecC-ChhHHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 224 VVNIKCID-RPKLLFDTLCALTDLQYVVFHAAISSK---------GCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 224 vV~V~~~D-RpgLL~~i~~~L~~~gl~I~~A~I~T~---------~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
+|+|.++| ++|++++++.+|+++|+||.+-+-.+. .....-+|.|+. .+. ..+.++..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~----~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPA----DLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCC----CHHHHHHHHHH
Confidence 47899999 999999999999999999987554321 124455666653 222 23556666653
No 197
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=87.96 E-value=1.6 Score=39.50 Aligned_cols=44 Identities=25% Similarity=0.390 Sum_probs=36.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEE
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYV 346 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv 346 (424)
+.+.+.++||.|.++|-++++.|.||++|.--..++-.....|.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYm 48 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYM 48 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEE
Confidence 67889999999999999999999999998876655544445555
No 198
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.82 E-value=0.98 Score=46.91 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=43.6
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCC
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGC 274 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~ 274 (424)
+...+.+.-+|+||.++.|+..|+++|+||...++.+.+++++-+| +.|+.
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii---e~D~~ 387 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI---DVDAD 387 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE---EeCCC
Confidence 5568888999999999999999999999999999988888885554 54553
No 199
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=87.66 E-value=2.1 Score=44.69 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=40.4
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCC
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHD 353 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~ 353 (424)
+.|-+...|+||-|++|..+|.++|||+++.+-.... ....-.||| |.+|.+
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~ 69 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS 69 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc
Confidence 5677777999999999999999999999996665432 334568999 444654
No 200
>PRK14637 hypothetical protein; Provisional
Probab=87.26 E-value=6.4 Score=35.19 Aligned_cols=92 Identities=9% Similarity=0.050 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcC-CCceEEEEEeCCC
Q 014457 232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRV-SHGLRLEICTQNR 310 (424)
Q Consensus 232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~-~~~~~lev~~~Dr 310 (424)
--|....+..++..+|+.+.+..+...++.-.-..+|...+| ++- +.++.+-+.|.++|..-. +..+.|||+++.=
T Consensus 7 ~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g--V~i-ddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGl 83 (151)
T PRK14637 7 DLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG--VGL-DDCARVHRILVPRLEALGGVRDVFLEVSSPGI 83 (151)
T ss_pred cccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC--CCH-HHHHHHHHHHHHHhcccccccCcEEEEeCCCC
Confidence 357778889999999999999999986654333455644444 322 589999999888886432 3468999998733
Q ss_pred CchHHHHHHHHHHCCc
Q 014457 311 MGLLSDVTRAFRENGL 326 (424)
Q Consensus 311 pGLL~~Itr~l~e~gl 326 (424)
---|...-.+-+-.|=
T Consensus 84 dRpL~~~~~f~r~~G~ 99 (151)
T PRK14637 84 ERVIKNAAEFSIFVGE 99 (151)
T ss_pred CCCCCCHHHHHHhCCC
Confidence 3335555555555453
No 201
>PRK14640 hypothetical protein; Provisional
Probab=87.14 E-value=6.8 Score=34.98 Aligned_cols=92 Identities=12% Similarity=0.148 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM 311 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp 311 (424)
.+...+.-.+..+|+.+.+..+...++.-+-..||...+|-.+ +.++.+.+.|.++|... .+..|.|||+++.=-
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~l---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~ 83 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSV---ENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLD 83 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCC
Confidence 3555677889999999999999886653334566655555333 68999999999998643 456889999988444
Q ss_pred chHHHHHHHHHHCCceE
Q 014457 312 GLLSDVTRAFRENGLSV 328 (424)
Q Consensus 312 GLL~~Itr~l~e~gl~I 328 (424)
--|...-.+-+-.|=.|
T Consensus 84 RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 84 RPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CcCCCHHHHHHhCCCeE
Confidence 44666666666666544
No 202
>PRK14647 hypothetical protein; Provisional
Probab=87.04 E-value=7.4 Score=35.04 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG 312 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG 312 (424)
+-..+..++..+||.+.+..+...++..+-..||....|-.+ +.++.+-+.|.+.|... .+..|.|||+++.=--
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvsl---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~R 86 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNL---DDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDR 86 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCH---HHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCC
Confidence 445567789999999999999987664334556644445333 68999999999988743 4568899999884333
Q ss_pred hHHHHHHHHHHCCceE
Q 014457 313 LLSDVTRAFRENGLSV 328 (424)
Q Consensus 313 LL~~Itr~l~e~gl~I 328 (424)
-|...-..-+-.|-.|
T Consensus 87 pL~~~~~f~r~~G~~v 102 (159)
T PRK14647 87 PLKKEADYERYAGRLV 102 (159)
T ss_pred cCCCHHHHHHhCCcEE
Confidence 3555555555555433
No 203
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.96 E-value=5.7 Score=30.93 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=36.2
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHH-HHHHHHHh
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVE-LLKQEIGG 368 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~-~lr~~l~~ 368 (424)
..++||++++|..+|.++|++|... ++ ++ ..=.|-|... .+..++.+. +|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI--~~-s~-~~iSftv~~~--d~~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLI--TT-SE-ISVALTLDNT--GSTSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEE--ee-cC-CEEEEEEecc--ccchhHHHHHHHHHHHHh
Confidence 5788999999999999999999994 44 22 2234444332 222223343 66666655
No 204
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.71 E-value=4.7 Score=32.00 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=24.1
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEE
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVA 114 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i 114 (424)
++.+.-+||||=|++++.+|+ +.||....-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence 577888999999999999999 666664433
No 205
>PRK06545 prephenate dehydrogenase; Validated
Probab=86.36 E-value=1.9 Score=43.80 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=34.9
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS 257 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T 257 (424)
.++.|.|.-+|+||-+++++..|...|+||.+.+|.-
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 5789999999999999999999999999999999965
No 206
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.24 E-value=4.4 Score=31.57 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=37.9
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
..+.||++++|..+|.++|++|... ++ ++ ..=.|-|.... .-+.++.+++|.++|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI--~~-s~-~~isftv~~~~-~~~~~~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLV--ST-SE-TNVTVSLDPDP-NGLDPDVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE--Ee-CC-CEEEEEEeCcc-cccchHHHHHHHHHHHh
Confidence 4588999999999999999999994 44 33 22234443322 11444466777777766
No 207
>PRK11898 prephenate dehydratase; Provisional
Probab=86.16 E-value=3.2 Score=40.93 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=45.1
Q ss_pred eEEEEEeCC-CCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 301 LRLEICTQN-RMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 301 ~~lev~~~D-rpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+.|-+...+ +||-|+++...|+++|||+++.+-.-.. ..-.-.||| |.+|.. +++.++.+-++|.+
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~~~~~~al~~L~~ 264 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DDVLVAEALKELEA 264 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CCHHHHHHHHHHHH
Confidence 445555544 6999999999999999999997766443 335678888 556765 33333443345444
No 208
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=85.98 E-value=2.3 Score=40.88 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=47.3
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC-CCCCCChHHHHHHHHHHHh
Q 014457 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA-SGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~-~g~~v~~~~~~~lr~~l~~ 368 (424)
+..+|.+--.|-||+|++|+-+|+..|.||.+.-+.- .++.+.|..+-. -| .+..+++.+++|.+
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~--tevk~LsrmTIVl~G---td~VveQa~rQied 141 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL--TEVKALSRMTIVLQG---TDGVVEQARRQIED 141 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec--hhhhhhhhceEEEec---cHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999987753 344455522111 11 24567777788776
No 209
>PRK09224 threonine dehydratase; Reviewed
Probab=85.83 E-value=33 Score=36.68 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=72.8
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-H-----
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-I----- 293 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l----- 293 (424)
.....+.|.-|||||-|.+++..|. +.||.+-+-.-.+..-..+|+.....+. +.+.+.|.+.|++. .
T Consensus 326 ~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 326 QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 3467899999999999999999999 5777765443322222234444332221 22477888888653 1
Q ss_pred --------------hhcCC---CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 294 --------------ERRVS---HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 294 --------------~rr~~---~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
..+.+ +-..+.+.=+.|||-|-+....|. -+-+|+..+-.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 01222 234788889999999999999777 67889888875
No 210
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=85.82 E-value=1.6 Score=45.66 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=40.5
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCce-e-eEEEEEeCCCCC
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKA-T-GSFYVMDASGHD 353 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a-~-d~Fyv~d~~g~~ 353 (424)
.+.|-+...|+||-|+++-++|.++|||+++.+-....... . -.||| |..|..
T Consensus 31 ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfV-D~Eg~~ 85 (464)
T TIGR01270 31 RLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLV-DVELFH 85 (464)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEE-EEEcCH
Confidence 45666777999999999999999999999997766554443 3 47888 444544
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=85.74 E-value=2.3 Score=45.61 Aligned_cols=43 Identities=26% Similarity=0.408 Sum_probs=37.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeC
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDA 349 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~ 349 (424)
+|+|.+.||.|+..+|...|..+++++...+|... +..|+.-+
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~-----~~~~~~~~ 44 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI-----GRIYLNFA 44 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC-----CeEEEeCC
Confidence 68999999999999999999999999999999765 34667433
No 212
>PRK12483 threonine dehydratase; Reviewed
Probab=85.52 E-value=36 Score=36.61 Aligned_cols=134 Identities=13% Similarity=0.071 Sum_probs=82.7
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEeecCCCCCCCHHHH-HHHHHHHHHH-H---
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKG-CFADQEYFIRQTDGCTLDTESQR-QKLTQCLIAA-I--- 293 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~-~~a~d~F~V~~~~g~~~~~~~~~-~~l~~~L~~a-l--- 293 (424)
.....+.|.-+||||-|.+++..|... ||.+..-.... +.+ .+++.....+. +.. +.|.+.|++. +
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~~~-----~~~~~~i~~~l~~~g~~~~ 414 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREA-HLFVGVQTHPR-----HDPRAQLLASLRAQGFPVL 414 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCee-EEEEEEEeCCh-----hhhHHHHHHHHHHCCCCeE
Confidence 356788999999999999999999988 77765554322 232 33333332221 243 6777777542 1
Q ss_pred ----------------hhcCC---CceEEEEEeCCCCchHHHHHHHHHH-CCceEEEEEEeecCCceeeEEEEEeCCCCC
Q 014457 294 ----------------ERRVS---HGLRLEICTQNRMGLLSDVTRAFRE-NGLSVSMAEIGTNGEKATGSFYVMDASGHD 353 (424)
Q Consensus 294 ----------------~rr~~---~~~~lev~~~DrpGLL~~Itr~l~e-~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~ 353 (424)
..+.+ +--.+.+.-+.|||=|.++.+.|.. .+|+-.+ =.-.|.....+|.=-.
T Consensus 415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~--YR~~~~~~a~v~vgi~----- 487 (521)
T PRK12483 415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFH--YRNHGAADGRVLAGLQ----- 487 (521)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeee--ecCCCCCceEEEEEEe-----
Confidence 01222 2357888899999999999999986 3555544 3334666666664222
Q ss_pred CChHHHHHHHHHHHh
Q 014457 354 VNQRTVELLKQEIGG 368 (424)
Q Consensus 354 v~~~~~~~lr~~l~~ 368 (424)
+.++..+.+.+.|.+
T Consensus 488 ~~~~~~~~~~~~l~~ 502 (521)
T PRK12483 488 VPEDERAALDAALAA 502 (521)
T ss_pred eChhHHHHHHHHHHH
Confidence 222334555555543
No 213
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=85.10 E-value=10 Score=33.85 Aligned_cols=90 Identities=13% Similarity=0.127 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM 311 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp 311 (424)
.+-..+..++..+|+.+.+..+...++...-..+|...+|- +-+.++.+-+.|.++|... .+..|.|||+++.--
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv---~iddc~~~Sr~is~~LD~~d~i~~~Y~LEVSSPGi~ 84 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGI---DLDDCEEVSRQISAVLDVEDPIPGAYTLEVSSPGLD 84 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCC---CHHHHHHHHHHHHHHhccccCCCCCeEEEEeCCCCC
Confidence 34555678899999999999999866543334555444443 2368999999999988643 446789999987333
Q ss_pred chHHHHHHHHHHCCc
Q 014457 312 GLLSDVTRAFRENGL 326 (424)
Q Consensus 312 GLL~~Itr~l~e~gl 326 (424)
--|...-..-+-.|-
T Consensus 85 RpL~~~~~f~r~~G~ 99 (154)
T PRK00092 85 RPLKKARDFRRFIGR 99 (154)
T ss_pred CcCCCHHHHHHhCCC
Confidence 334444444444443
No 214
>PRK14638 hypothetical protein; Provisional
Probab=85.03 E-value=11 Score=33.71 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCC
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRM 311 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~Drp 311 (424)
.+-.-+..++..+|+.+.+......++..+-..||..++|. ++- +.++.+.+.|.+.|... .+..|.|||+++.=-
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~-v~l-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGld 86 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGY-VSV-RDCELFSREIERFLDREDLIEHSYTLEVSSPGLD 86 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCC-cCH-HHHHHHHHHHHHHhccccccCCceEEEEeCCCCC
Confidence 34455667889999999999998866543345566444552 332 58999999999988643 456889999988333
Q ss_pred chHHHHHHHHHHCCceEEEEEEeecC
Q 014457 312 GLLSDVTRAFRENGLSVSMAEIGTNG 337 (424)
Q Consensus 312 GLL~~Itr~l~e~gl~I~~A~i~T~g 337 (424)
--|...-..-+-.|=.| +|.+.+
T Consensus 87 RpL~~~~~f~r~~G~~v---~V~~~~ 109 (150)
T PRK14638 87 RPLRGPKDYVRFTGKLA---KIVTKD 109 (150)
T ss_pred CCCCCHHHHHHhCCCEE---EEEECC
Confidence 33555555555555433 444443
No 215
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=84.88 E-value=1.8 Score=41.63 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=45.0
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEE--EEEEeecCCCCCCCHHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQ--EYFIRQTDGCTLDTESQRQKLTQCLIAA 292 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d--~F~V~~~~g~~~~~~~~~~~l~~~L~~a 292 (424)
.-++++...|-||.+.+|+++|+..|+||.+.-+.-....++. +..++-.| .-.|..++.|+..
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd-------~VveQa~rQiedl 142 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD-------GVVEQARRQIEDL 142 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH-------HHHHHHHHHHHHh
Confidence 4589999999999999999999999999999888543333332 33443322 2345555666554
No 216
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=84.78 E-value=51 Score=33.89 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=27.9
Q ss_pred CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEE
Q 014457 221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFH 252 (424)
Q Consensus 221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~ 252 (424)
+...|.|.+ +++||+++++..+|.+.|+||..
T Consensus 336 ~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 336 GLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 567777777 48999999999999999999984
No 217
>PRK14639 hypothetical protein; Provisional
Probab=84.77 E-value=8.7 Score=33.85 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=61.2
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCchHHH
Q 014457 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMGLLSD 316 (424)
Q Consensus 239 i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpGLL~~ 316 (424)
+-.++..+|+.+.+..+...++..+-..||....| ++- +.++.+.+.|.+.|... .+..|.|||+++.----|..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g--v~i-ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~RpL~~ 79 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG--VNL-DDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLERKLSK 79 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC--CCH-HHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCCcCCC
Confidence 34568899999999999987765444566644444 332 68999999999988743 45678999998844444666
Q ss_pred HHHHHHHCCceE
Q 014457 317 VTRAFRENGLSV 328 (424)
Q Consensus 317 Itr~l~e~gl~I 328 (424)
.-.+-+-.|-.|
T Consensus 80 ~~~f~r~~G~~v 91 (140)
T PRK14639 80 IEHFAKSIGELV 91 (140)
T ss_pred HHHHHHhCCCEE
Confidence 566666666554
No 218
>PRK14633 hypothetical protein; Provisional
Probab=84.62 E-value=12 Score=33.47 Aligned_cols=89 Identities=18% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG 312 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG 312 (424)
+-..+..++..+||.+.+..+...++..+ ..||..++|-.+ +.++.+-+.|.++|... .+..|.|||+++.=--
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~Gv~l---ddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR 81 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENGVSV---DDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR 81 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCCCCH---HHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC
Confidence 45567788999999999999987666544 455644555333 68999999999988743 4578999999984444
Q ss_pred hHHHHHHHHHHCCce
Q 014457 313 LLSDVTRAFRENGLS 327 (424)
Q Consensus 313 LL~~Itr~l~e~gl~ 327 (424)
-|...-..-+-.|=.
T Consensus 82 pL~~~~~f~r~~G~~ 96 (150)
T PRK14633 82 QIFNIIQAQALVGFN 96 (150)
T ss_pred CCCCHHHHHHhCCCe
Confidence 466666666665644
No 219
>PRK08198 threonine dehydratase; Provisional
Probab=84.21 E-value=7.2 Score=40.27 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=33.6
Q ss_pred CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE
Q 014457 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW 115 (424)
Q Consensus 78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~ 115 (424)
......+.|.-+|+||-|+++..+++++|.||.+-...
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 45557899999999999999999999999999987654
No 220
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=84.16 E-value=26 Score=36.67 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=64.1
Q ss_pred CeEEEEEEecC-C-hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--
Q 014457 221 GYSVVNIKCID-R-PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR-- 296 (424)
Q Consensus 221 ~~tvV~V~~~D-R-pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr-- 296 (424)
+...|+|.+.+ . ||++.++..+|.+.|++|....-.+. +.. -.|.|... ..++..+.|.......
T Consensus 301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~s-e~s-Is~~I~~~---------~~~~a~~~L~~~~~~~~~ 369 (441)
T TIGR00657 301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSS-ETS-ISFTVDKE---------DADQAKTLLKSELNLSAL 369 (441)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCC-Cce-EEEEEEHH---------HHHHHHHHHHHHHHhcCc
Confidence 56677777543 3 79999999999999999987753222 111 23445321 1222222232211111
Q ss_pred -----CCCceEEEEEe---CCCCchHHHHHHHHHHCCceEEEEE
Q 014457 297 -----VSHGLRLEICT---QNRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 297 -----~~~~~~lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
..+-..+.|.+ .++||++++|.+.|+++|++|....
T Consensus 370 ~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred ceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 11245677754 4889999999999999999998854
No 221
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.91 E-value=2.5 Score=45.39 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=44.7
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQ 364 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~ 364 (424)
++.|=+.-.|+||.+..|+.+|.++|+||....++-. |+.+.-+|-+ ..+++++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~----D~~v~~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV----DDPVPEEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC----CCCCCHHHHHHHhc
Confidence 4556566799999999999999999999999887653 3444444443 33666677777764
No 222
>PRK11899 prephenate dehydratase; Provisional
Probab=83.21 E-value=7.6 Score=38.26 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcH
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAP 139 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~ 139 (424)
.|.|-+..+|+||.|+++-.+|+..|+|+..-+--- .++...=+|||.= +|. ..|+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~-~~d~ 250 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH-PEDR 250 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC-CCCH
Confidence 588888889999999999999999999998877665 4566777898864 565 3343
No 223
>PRK06349 homoserine dehydrogenase; Provisional
Probab=83.10 E-value=12 Score=39.01 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=41.0
Q ss_pred CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
....|.+...|+||.|++|+.+|.++++||.+-......+....++++++
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 34688999999999999999999999999997765554445667777877
No 224
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=83.00 E-value=3.8 Score=41.94 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
...+.|.-+||||.|+++++.+.++|.||....-.
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 35899999999999999999999999999887543
No 225
>PRK09084 aspartate kinase III; Validated
Probab=82.75 E-value=20 Score=37.75 Aligned_cols=131 Identities=14% Similarity=0.207 Sum_probs=76.5
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh-
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER- 295 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r- 295 (424)
++...|+|.+. +.||.++++...|++.|++|..... +. .--+|+|...+-.. ...+.+.+.+.+.+..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se---~sIs~~i~~~~~~~----~~~~~~~~~l~~el~~~ 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SE---VSVSLTLDTTGSTS----TGDTLLTQALLTELSQL 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cC---cEEEEEEechhhhh----hhhHHHHHHHHHHHhcC
Confidence 35678888764 6899999999999999999998752 11 22346664322110 0112222233222321
Q ss_pred -c--C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 296 -R--V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 296 -r--~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
+ . ++...|.|.+. ++||+++++..+|.+.++.+ -++|....+.-++.+... ..+.++.|.++|
T Consensus 376 ~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~~-----I~qgsSe~sIS~vV~~~d---~~~al~~LH~~f 445 (448)
T PRK09084 376 CRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNIRM-----ICYGASSHNLCFLVPESD---AEQVVQALHQNL 445 (448)
T ss_pred CeEEEECCeEEEEEECCCcccCcChHHHHHHHHHhCCeEE-----EEEcCCCCcEEEEEcHHH---HHHHHHHHHHHH
Confidence 1 1 23467888776 78999999999998754433 234555666544434310 123455555554
No 226
>PRK14631 hypothetical protein; Provisional
Probab=82.69 E-value=15 Score=33.64 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeec----------------CCCCCCCHHHHHHHHHHHHHHHhhc-
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT----------------DGCTLDTESQRQKLTQCLIAAIERR- 296 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~----------------~g~~~~~~~~~~~l~~~L~~al~rr- 296 (424)
.+...+.-++..+|+.+.+..+...++..+-..||..+ .+..++- +.++.+.+.|.++|...
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~~d 87 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDVHD 87 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhcccc
Confidence 45566778899999999999999876544344556432 1122332 58999999999988633
Q ss_pred -CCCceEEEEEeCCCCchHHHHHHHHHHCCceE
Q 014457 297 -VSHGLRLEICTQNRMGLLSDVTRAFRENGLSV 328 (424)
Q Consensus 297 -~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I 328 (424)
.+..|.|||+++.----|.....+-+-.|=.|
T Consensus 88 ~i~~~Y~LEVSSPGldRpL~~~~df~r~~G~~V 120 (174)
T PRK14631 88 PISGEYALEVSSPGWDRPFFQLEQLQGYIGQQV 120 (174)
T ss_pred cCCCCeEEEEeCCCCCCcCCCHHHHHHhCCCeE
Confidence 46689999999855445777777777666444
No 227
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.51 E-value=6.3 Score=33.54 Aligned_cols=51 Identities=10% Similarity=0.028 Sum_probs=36.2
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEeecCCC
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFADQEYFIRQTDGC 274 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~d~F~V~~~~g~ 274 (424)
+-+.+..+|+||-|+++-..|+.+|+|+.+-...-. +..-.-.||| +.+|.
T Consensus 42 tSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfI-dieg~ 93 (115)
T cd04930 42 ATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLV-RCEVH 93 (115)
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEE-EEEeC
Confidence 455555599999999999999999999998765442 2222234777 54554
No 228
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=82.49 E-value=4.2 Score=36.68 Aligned_cols=65 Identities=20% Similarity=0.354 Sum_probs=46.7
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..+.+--.|.||.|+.++-.|++.|+||.+..+.-.. +...-+=.++. | ++..++++.+++.+.+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g---~~~~~EQi~kQL~kLi 70 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G---DEQVLEQIIKQLNKLI 70 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C---CcchHHHHHHHHHhhc
Confidence 3577888999999999999999999999998886333 22222222322 2 3456788888887754
No 229
>PRK08818 prephenate dehydrogenase; Provisional
Probab=82.36 E-value=2.9 Score=42.88 Aligned_cols=49 Identities=22% Similarity=0.272 Sum_probs=38.9
Q ss_pred CcEEEEEEeC-CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 80 ENTALEVTGV-DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 80 ~~t~iev~~~-DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
..+.|.+.-+ |+||-|++|..+|+.+|+||.+-++ .+.....-.|+|.=
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 4677777776 9999999999999999999999888 54433444488754
No 230
>PRK08210 aspartate kinase I; Reviewed
Probab=82.06 E-value=66 Score=33.16 Aligned_cols=36 Identities=22% Similarity=0.203 Sum_probs=28.7
Q ss_pred CCcEEEEEEeCCc-chHHHHHHHHHHHcCceEeeEEE
Q 014457 79 TENTALEVTGVDR-PGLMSEISAVLYELGCHVPAAVA 114 (424)
Q Consensus 79 ~~~t~iev~~~DR-pGLLs~I~~vL~~~~~~I~~A~i 114 (424)
.+...|+|.+.+. ||.+++|+.+|.++|+||..-..
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~ 305 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI 305 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence 3455677776555 99999999999999999987643
No 231
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=81.59 E-value=10 Score=38.82 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEE---c--CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHH
Q 014457 79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAW---T--HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLE 150 (424)
Q Consensus 79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~---T--~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~ 150 (424)
.....+.|.-+||||-|++++.+++++|.||.+-.-. . ..+.+.-.+.|... +++..+.|.+.|.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-------~~~~~~~i~~~L~ 372 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-------GKEHLDEILKILR 372 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-------CHHHHHHHHHHHH
Confidence 3445899999999999999999999999999877443 2 23455555555331 2345455555553
No 232
>PRK14643 hypothetical protein; Provisional
Probab=81.57 E-value=16 Score=33.05 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEee---cCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeC
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQ---TDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQ 308 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~---~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~ 308 (424)
.+-.-+..++..+|+.+.+....+.++..+-..||.+ ++|. ++ =+.++.+.+.|.+.|.. -.+..|.|||+++
T Consensus 10 ~l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~gg-vt-ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSP 87 (164)
T PRK14643 10 QINELVNKELEVLNLKVYEINNLKEFENDMIQILVEDILQANKP-LD-FDILIKANDLVSNKIDQFIKTSEKYLLEISSS 87 (164)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCC-cC-HHHHHHHHHHHHHHhCccCCCCCCeEEEecCC
Confidence 4455567788999999999999997764444567754 2332 33 25889999999998864 3567899999998
Q ss_pred CCCchHHHHHHHHHHCCceE
Q 014457 309 NRMGLLSDVTRAFRENGLSV 328 (424)
Q Consensus 309 DrpGLL~~Itr~l~e~gl~I 328 (424)
.=---|...-.+-+-.|=.|
T Consensus 88 GleRpL~~~~df~r~~G~~V 107 (164)
T PRK14643 88 GIEKQIRSQEELVKALNQWV 107 (164)
T ss_pred CCCCCCCCHHHHHHhcCCeE
Confidence 54444666555555556544
No 233
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=81.50 E-value=6.2 Score=38.80 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=44.7
Q ss_pred CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCc
Q 014457 80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITA 138 (424)
Q Consensus 80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d 138 (424)
..|.|-+..+|+||-|+++-++|+.+|+|...-+-.- ..+-..-+|||.= +|. +.+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~-~~~ 249 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGH-IDD 249 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecC-cCc
Confidence 4788888899999999999999999999998776655 5566677888854 455 444
No 234
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=81.49 E-value=2.8 Score=45.04 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=45.0
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHH
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQ 364 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~ 364 (424)
++.+=+.-.||||.+..|+.+|.++++||....+.-. |+.+.-.+.+ ..+++++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~----D~~v~~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSL----DQPVPDEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEc----CCCCCHHHHHHHhc
Confidence 4555566689999999999999999999988877643 4445544444 23666677777764
No 235
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=81.40 E-value=4.9 Score=36.29 Aligned_cols=65 Identities=11% Similarity=0.202 Sum_probs=47.5
Q ss_pred EEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh
Q 014457 223 SVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS-SKG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE 294 (424)
Q Consensus 223 tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~-T~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~ 294 (424)
-++.+.-.|.||.|.++++.|+..||||.+-.+. |+. +...-++.+ . | ++...+++.+.|...+.
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv-~--g----~~~~~EQi~kQL~kLid 71 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVV-S--G----DEQVLEQIIKQLNKLID 71 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEE-c--C----CcchHHHHHHHHHhhcc
Confidence 3678888999999999999999999999999995 433 344444444 2 1 12356778888877653
No 236
>PRK06291 aspartate kinase; Provisional
Probab=81.33 E-value=77 Score=33.47 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=68.1
Q ss_pred CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHcc
Q 014457 79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVGA 155 (424)
Q Consensus 79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~~ 155 (424)
.+.+.|.+.+. +.||+++++..+|+++|++|..-...+.. .--.|.|.+ +..++..+.|.+.+..
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGE 386 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 34577888775 68999999999999999999875433322 222344433 1112223333333321
Q ss_pred CCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---CC
Q 014457 156 HHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---DR 232 (424)
Q Consensus 156 ~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---DR 232 (424)
.. . ..|.+ ..+...|.|.+. ++
T Consensus 387 ~~-~--------------------------------------------------~~i~~----~~~~a~IsvvG~gm~~~ 411 (465)
T PRK06291 387 GL-V--------------------------------------------------RDVTF----DKDVCVVAVVGAGMAGT 411 (465)
T ss_pred hc-C--------------------------------------------------cceEE----eCCEEEEEEEcCCccCC
Confidence 10 0 00111 124567777774 79
Q ss_pred hhHHHHHHHHHHhCCceEEEEE
Q 014457 233 PKLLFDTLCALTDLQYVVFHAA 254 (424)
Q Consensus 233 pgLL~~i~~~L~~~gl~I~~A~ 254 (424)
+|+..++..+|.+.|++|..-.
T Consensus 412 ~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 412 PGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred cChHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999998544
No 237
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.30 E-value=17 Score=32.65 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeC-
Q 014457 233 PKLLFDTLCALTDLQYVVFHAAISSKGC-FADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQ- 308 (424)
Q Consensus 233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~-~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~- 308 (424)
..+..-+-.++.++||.+.+..+...++ ..+.+ |+..+.|-.+ +.++++-+.+.+.|... .+..|.|||+++
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI-~id~~g~v~l---ddC~~vSr~is~~LD~edpi~~~Y~LEVSSPG 83 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRI-YIDKEGGVTL---DDCADVSRAISALLDVEDPIEGAYFLEVSSPG 83 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEE-EeCCCCCCCH---HHHHHHHHHHHHHhccCCcccccEEEEeeCCC
Confidence 4556666788999999999999999774 55554 4533333333 57899999999998744 346899999987
Q ss_pred -CCCchHHHHHHHHHHCCce
Q 014457 309 -NRMGLLSDVTRAFRENGLS 327 (424)
Q Consensus 309 -DrpGLL~~Itr~l~e~gl~ 327 (424)
|||= .....+-+-.|-.
T Consensus 84 ldRpL--~~~~~f~r~~G~~ 101 (153)
T COG0779 84 LDRPL--KTAEHFARFIGEK 101 (153)
T ss_pred CCCCc--CCHHHHHHhcCcE
Confidence 6763 3333444444433
No 238
>PRK14632 hypothetical protein; Provisional
Probab=80.99 E-value=17 Score=33.18 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--CCCceEEEEEeCCCCc
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--VSHGLRLEICTQNRMG 312 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~~~~~~lev~~~DrpG 312 (424)
+-.-+.-++..+||.+.+..+.. ++..+-..||...+|-.+ +.++.+.+.|.++|... .+..|.|||+++.=--
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~l---dDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR 85 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTI---DQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER 85 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCH---HHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC
Confidence 44556678899999999999775 443334556644445333 68999999999988643 4568899999873333
Q ss_pred hHHHHHHHHHHCCc
Q 014457 313 LLSDVTRAFRENGL 326 (424)
Q Consensus 313 LL~~Itr~l~e~gl 326 (424)
-|...-.+-+-.|=
T Consensus 86 pL~~~~~f~r~iG~ 99 (172)
T PRK14632 86 PFFRAEQMSPYVGR 99 (172)
T ss_pred cCCCHHHHHHhCCC
Confidence 35555555555443
No 239
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=80.71 E-value=18 Score=26.35 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=28.3
Q ss_pred EEEEEEe---CCcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 82 TALEVTG---VDRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 82 t~iev~~---~DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
..|.+.| .+.||++++|...|++.|++|..-...+
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3567777 4789999999999999999997665434
No 240
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.70 E-value=18 Score=26.49 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=28.7
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
..|.++|. ++||.++++.++|++.|+++..-...+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35677776 689999999999999999997765544
No 241
>PRK09034 aspartate kinase; Reviewed
Probab=80.66 E-value=80 Score=33.26 Aligned_cols=37 Identities=8% Similarity=-0.005 Sum_probs=29.5
Q ss_pred CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457 221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISS 257 (424)
Q Consensus 221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T 257 (424)
+...|.+.+ .+.||++.++..+|.+.|+||......+
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 456777755 4789999999999999999998765433
No 242
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=80.21 E-value=27 Score=39.96 Aligned_cols=135 Identities=11% Similarity=0.120 Sum_probs=80.6
Q ss_pred CCeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc
Q 014457 220 KGYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR 296 (424)
Q Consensus 220 ~~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr 296 (424)
++.+.|+|.+ .+.||.++++...|++.+++|.... +. + .--+|.+...+.. . .+..++.+...|...-+-.
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--ss-e-~sis~~i~~~~~~-~-~~~~~~~l~~~l~~~~~i~ 393 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SS-E-TNVTVSLDPSENL-V-NTDVLAALSADLSQICRVK 393 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cC-C-CEEEEEEcccccc-c-hHHHHHHHHHHHhhcCcEE
Confidence 3567888864 4689999999999999999997763 22 2 1123555332211 0 1122333433433200001
Q ss_pred C-CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 297 V-SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 297 ~-~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
. .+-.+|.|.+. .+||+++++..+|.+.|+++. .+|....+..+|.+.... .+.++.|.++|.+
T Consensus 394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~i-----~~gsSe~~Is~vV~~~d~---~~av~~LH~~f~~ 461 (861)
T PRK08961 394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHLI-----SQASNDLNLTFVIDESDA---DGLLPRLHAELIE 461 (861)
T ss_pred EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEEE-----ECCCccccEEEEEeHHHH---HHHHHHHHHHHhc
Confidence 1 23467888776 789999999999999886553 355666676555554211 2356677666644
No 243
>PLN02550 threonine dehydratase
Probab=79.84 E-value=62 Score=35.42 Aligned_cols=134 Identities=15% Similarity=0.121 Sum_probs=83.0
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-Hh----
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-IE---- 294 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l~---- 294 (424)
....+.|.-+||||-|.+++..|... ||.+..-.- ..+.+ .+++..... .++..++|.+.|++. +.
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 44678999999999999999999986 776654433 22233 222222222 235778888888653 10
Q ss_pred ----------hcCC-------CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChH
Q 014457 295 ----------RRVS-------HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQR 357 (424)
Q Consensus 295 ----------rr~~-------~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~ 357 (424)
|.+. +--.+.+.-+.|||-|.++..+|... -+|+..+-...++....+|.=-. +.++
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~~-~nITeF~YR~~~~~~a~vlvGi~-----v~~~ 561 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSPR-WNISLFHYRGQGETGANVLVGIQ-----VPPE 561 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCCC-CceeeEEeecCCCCCccEEEEEe-----eCHH
Confidence 1111 13467888999999999999988753 34555445555666666664322 2234
Q ss_pred HHHHHHHHHHh
Q 014457 358 TVELLKQEIGG 368 (424)
Q Consensus 358 ~~~~lr~~l~~ 368 (424)
.++.+.+.|.+
T Consensus 562 e~~~l~~~l~~ 572 (591)
T PLN02550 562 EMQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHHH
Confidence 55566665544
No 244
>PRK08198 threonine dehydratase; Provisional
Probab=79.69 E-value=11 Score=38.79 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS 256 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~ 256 (424)
.....+.|.-+|+||-|.+++..+++.|.||.+....
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 3556899999999999999999999999999987654
No 245
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=79.32 E-value=13 Score=27.08 Aligned_cols=52 Identities=21% Similarity=0.438 Sum_probs=35.3
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHH
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEI 366 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l 366 (424)
..+++|+.++|-++|.++|+++... +| ++ ..=.|++.... . ++.++.|.++|
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~~~---~-~~~~~~l~~~l 61 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDDSL---L-PKKLKRLLAEL 61 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEehhh---h-hHHHHHHHHhh
Confidence 3478999999999999999999994 45 22 33467775432 1 23555555544
No 246
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=78.67 E-value=9.6 Score=34.30 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=41.0
Q ss_pred eEEEEEe--CCCCchHHHHHHHHHHCCceEEEEEEeecCCceee-EEEEEeCCCCCCChHHHHHHH
Q 014457 301 LRLEICT--QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATG-SFYVMDASGHDVNQRTVELLK 363 (424)
Q Consensus 301 ~~lev~~--~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d-~Fyv~d~~g~~v~~~~~~~lr 363 (424)
-++|+.. .+.||+|+.|+..++++|++|..+-. ...+-..+ .-||.. -+|+....+.+|+
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~-~dpe~~~e~~l~IVt--e~~iP~~li~el~ 156 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS-EDPELQEEPKLTIVT--ERPIPGDLIDELK 156 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec-CCcccCCCceEEEEE--eccCCHHHHHHHh
Confidence 3666666 45699999999999999999999753 34433333 334432 3477666777665
No 247
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=78.26 E-value=16 Score=28.01 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=38.2
Q ss_pred EEEEE---eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 302 RLEIC---TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 302 ~lev~---~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.+.+. ..+.+|++++|..+|.++|+++... .+.+ ..=.|.| +......++..++.|.++|.+
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i--~~s~--~~is~~v-~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI--STSE--VSVSLTL-DPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE--EcCC--cEEEEEE-EchhhccchHHHHHHHHHHHh
Confidence 45553 3578999999999999999999774 4422 1123444 322211112356677777665
No 248
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=77.59 E-value=12 Score=32.81 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeCCCCchHHH
Q 014457 239 TLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQNRMGLLSD 316 (424)
Q Consensus 239 i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~DrpGLL~~ 316 (424)
+...+..+|+.+.+..+...++...-..+|.. ++. ++- +.++++.+.+.+.|.. -.+..|.|||+++.----|..
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~l-ddc~~~sr~i~~~LD~~d~i~~~y~LEVSSPG~~r~L~~ 78 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSL-DDCEKVSRAISALLDAEDPIPEDYTLEVSSPGIDRPLKS 78 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----H-HHHHHHHHHHGGGTTTS----S-EEEEEE--SSSS--SS
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCH-HHHHHHHHHHHHHHccccccCcceEEEEeCCCCCCcCCC
Confidence 45678899999999999998775444445544 443 432 5888888888888765 346789999998743333443
Q ss_pred HHHHHHHCC
Q 014457 317 VTRAFRENG 325 (424)
Q Consensus 317 Itr~l~e~g 325 (424)
.-..-+-.|
T Consensus 79 ~~~~~~~iG 87 (141)
T PF02576_consen 79 PRDFERFIG 87 (141)
T ss_dssp HHHHHHH-S
T ss_pred HHHHHHhcC
Confidence 334444444
No 249
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=76.20 E-value=26 Score=25.84 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.5
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCceEe
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCHVP 110 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~ 110 (424)
..|.+.|. +.||+++++..+|.+.|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35777775 789999999999999999996
No 250
>PLN02551 aspartokinase
Probab=75.04 E-value=1.3e+02 Score=32.51 Aligned_cols=140 Identities=12% Similarity=0.192 Sum_probs=79.9
Q ss_pred CCCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 78 STENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 78 ~~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
..+.+.|+|.+. +.||.+++|...|.++|++|.-- .|.. ..-.|.|... + +. . .+.+++.|.+.+.
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~-~---~~--~-~~~i~~~l~~l~~ 431 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPS-K---LW--S-RELIQQELDHLVE 431 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehh-H---hh--h-hhhHHHHHHHHHH
Confidence 344577888766 58999999999999999999866 2322 2234555441 1 11 1 2233333322221
Q ss_pred cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEe--cCC
Q 014457 155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKC--IDR 232 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~--~DR 232 (424)
. ... + ..|.+ ..+...|.|.+ ...
T Consensus 432 e-l~~-----~--------------------------------------------~~V~v----~~~vAiISvVG~~~~~ 457 (521)
T PLN02551 432 E-LEK-----I--------------------------------------------AVVNL----LQGRSIISLIGNVQRS 457 (521)
T ss_pred H-hhc-----C--------------------------------------------CeEEE----eCCEEEEEEEccCCCC
Confidence 1 000 0 01111 12455666665 368
Q ss_pred hhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 014457 233 PKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAI 293 (424)
Q Consensus 233 pgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al 293 (424)
||++.++..+|++.|+||.-....+. ..--.|.|.. ...++..+.|.+.+
T Consensus 458 ~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~---------~d~~~Av~aLH~~F 507 (521)
T PLN02551 458 SLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND---------DEAEQCVRALHSAF 507 (521)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH---------HHHHHHHHHHHHHH
Confidence 99999999999999999986554332 1112244422 34455556666554
No 251
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=75.00 E-value=7.3 Score=39.80 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=45.9
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+|+|.+.||.||..++-..|-..+|++...+|. ..+.-|+--+ .++.+..++|+.+|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid-----~~~~IYln~p---~l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID-----PIGRIYLNFP---ELEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec-----CCCeEEEecc---ccCHHHHHHHHHHHhc
Confidence 589999999999999999999999999999983 3344566333 3444567777777665
No 252
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=74.94 E-value=11 Score=27.98 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=29.8
Q ss_pred EEEEEeC---CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeE-EEE
Q 014457 302 RLEICTQ---NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGS-FYV 346 (424)
Q Consensus 302 ~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~-Fyv 346 (424)
.+.+.+. +.||+++++..+|.+.|++|.. ++| ...+. |.|
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~--~~~---Se~~is~~v 46 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEILQ--TAD---SHTTISCLV 46 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEEE--EEc---CccEEEEEE
Confidence 4556564 7899999999999999999963 444 45555 444
No 253
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=74.19 E-value=6 Score=35.57 Aligned_cols=37 Identities=11% Similarity=0.294 Sum_probs=29.9
Q ss_pred CcEEEEEEe--CCcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 80 ENTALEVTG--VDRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 80 ~~t~iev~~--~DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
++-+||++. .+.||.++.++..++++||+|..+-..-
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~d 130 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISED 130 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecCC
Confidence 445666665 6679999999999999999999886543
No 254
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.10 E-value=7.4 Score=41.79 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=40.3
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEE
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYI 127 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V 127 (424)
...+...+-+.-.|+||.+..|+.+|.++++||...++.. .++.+.-++-+
T Consensus 448 ~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 448 AKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eeCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3445566666779999999999999999999999998876 45666666654
No 255
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=72.98 E-value=28 Score=27.62 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-C-CceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-H-KTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~-~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
...+.+.+.++|++|.++-++-..-|+.|-.-..++ + +|++---|.|.. ..++ +.|..+|.++.+
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCCh------HHHHHHHHHHcc
Confidence 357889999999999999999999999999888888 3 566666665543 2333 566777766554
No 256
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=72.13 E-value=35 Score=24.76 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=26.9
Q ss_pred EEEEEEe---cCChhHHHHHHHHHHhCCceEEEEEE
Q 014457 223 SVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAI 255 (424)
Q Consensus 223 tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I 255 (424)
..|.+.+ ++.||+++++..+|++.|++|.-...
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 3566666 58899999999999999999976543
No 257
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=72.10 E-value=7.6 Score=41.71 Aligned_cols=51 Identities=16% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc--CCceEEEEEEEe
Q 014457 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT--HKTRAACIFYIE 128 (424)
Q Consensus 78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T--~~~r~~dvf~V~ 128 (424)
..+...+-+.-.|+||.+..|+.+|.++++||...++.. .++.+.-++.+.
T Consensus 448 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 448 EPEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred ecCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 344555666679999999999999999999999888876 456666666553
No 258
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=71.27 E-value=22 Score=36.69 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=45.5
Q ss_pred CcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcH
Q 014457 80 ENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAP 139 (424)
Q Consensus 80 ~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~ 139 (424)
..|.|-+..+|+||.|+++-.+|+..|+|+..-+--- .++...=+|||.= +|. ..|+
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~-~~d~ 353 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN-LRSA 353 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC-CCCH
Confidence 4677878889999999999999999999998877664 6666788899865 464 3343
No 259
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=70.28 E-value=1.5e+02 Score=31.65 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=70.3
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-H-----
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-I----- 293 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l----- 293 (424)
.....+.|.-|||||-|.+++.+|.. .||.+.+-.-.+.....+|+.....+ +++.+.|.+.|++. .
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~-----~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSN-----PQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHcCCCeEEC
Confidence 45678999999999999999999997 46665544332222223444433222 35778888888653 1
Q ss_pred --------------hhcCCC---ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457 294 --------------ERRVSH---GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG 337 (424)
Q Consensus 294 --------------~rr~~~---~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g 337 (424)
..+.+. --...+.=+-|||-|-+...+|.. .-+|+..+-.-.|
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~~-~~~It~f~Yr~~~ 455 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQG-YWNISLFHYRNHG 455 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcCC-CCceeeEEEecCC
Confidence 012222 346778899999988887664432 3477777764433
No 260
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=70.01 E-value=2e+02 Score=32.76 Aligned_cols=182 Identities=14% Similarity=0.142 Sum_probs=100.9
Q ss_pred CCCcEEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHHHHc
Q 014457 78 STENTALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEIVVG 154 (424)
Q Consensus 78 ~~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~~L~ 154 (424)
..+.+.|.|.+. ++||+++++..+|+++|++|......+.. ..-.|.|.+. ..++....|.+.+.
T Consensus 312 ~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~~----------d~~~av~~L~~~f~ 379 (819)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQS----------DAAKAKRALEEEFA 379 (819)
T ss_pred eCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeHH----------HHHHHHHHHHHHHH
Confidence 345678888875 67999999999999999999766543322 2234545431 12222233333222
Q ss_pred cCCCCCccceeeccCCCCCCcchhhhhhhhhhcccccccccCCCCCCCCCCCCCccEEEEeecCCCCeEEEEEEec---C
Q 014457 155 AHHGEGETRSVRLTTPMPGRTHTERRLHQLMYADRDYELCRGCDGGAGHWNGCTRTHVLIDSCKEKGYSVVNIKCI---D 231 (424)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~g~~h~errl~q~m~~~~~~~~~~~~~~~~~~~~~~~~p~V~v~~~~~~~~tvV~V~~~---D 231 (424)
..... +. ...|.+ ..+...|.|.+. +
T Consensus 380 ~el~~-------------------~~----------------------------~~~i~~----~~~valIsvvG~gm~~ 408 (819)
T PRK09436 380 LELKE-------------------GL----------------------------LEPLEV----EENLAIISVVGDGMRT 408 (819)
T ss_pred HHhcc-------------------CC----------------------------cceEEE----eCCEEEEEEEccCccc
Confidence 11000 00 011222 124677888775 7
Q ss_pred ChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCC
Q 014457 232 RPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRM 311 (424)
Q Consensus 232 RpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~Drp 311 (424)
+||++.++..+|.+.|+||....-.+..-. -.|.|.. ...++..+.|.+.+.. ......|-|.+.-..
T Consensus 409 ~~gv~arif~aL~~~~InI~~IsqgsSe~~--Is~vV~~---------~d~~~al~~LH~~f~~-~~~~~~i~l~G~G~V 476 (819)
T PRK09436 409 HPGIAAKFFSALGRANINIVAIAQGSSERS--ISVVIDN---------DDATKALRACHQSFFL-SDQVLDVFVIGVGGV 476 (819)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEeccccce--EEEEEcH---------HHHHHHHHHHHHHHhc-ccccccEEEEecCHH
Confidence 899999999999999999986543332211 1244422 2344555556555421 113456667766555
Q ss_pred c--hHHHH---HHHHHHCCceEEEEEEe
Q 014457 312 G--LLSDV---TRAFRENGLSVSMAEIG 334 (424)
Q Consensus 312 G--LL~~I---tr~l~e~gl~I~~A~i~ 334 (424)
| ++.-+ ...|++.|+.+.-..|.
T Consensus 477 G~~~~~~l~~~~~~l~~~~~~l~v~~i~ 504 (819)
T PRK09436 477 GGALLEQIKRQQPWLKKKNIDLRVCGIA 504 (819)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEEE
Confidence 4 22222 22455556666655454
No 261
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=69.28 E-value=24 Score=27.22 Aligned_cols=54 Identities=13% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 308 QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 308 ~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
.-.||++++|-++|.++|++|... .+ ++ +.+-++-... .+.++.+++|.++|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I--~~-s~---~~isftv~~~-~~~~~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLI--ST-SE---VHVSMALHME-NAEDTNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEE--Ee-CC---CEEEEEEehh-hcChHHHHHHHHHHHH
Confidence 456999999999999999999994 44 33 3333332222 2233366777777766
No 262
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.17 E-value=16 Score=25.62 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=30.1
Q ss_pred eCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457 88 GVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED 129 (424)
Q Consensus 88 ~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d 129 (424)
.+|.||.++++...|.++|++|....... .++...-.|.|.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 47889999999999999999997765432 2333444555544
No 263
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.57 E-value=22 Score=27.99 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=28.6
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD 348 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d 348 (424)
..+.||++++|-++|.++|++|... ++ ++ ..=.|-|..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI--~q-s~-~sISftV~~ 48 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVV--AT-SE-VSISLTLDP 48 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEE--Ee-cC-CEEEEEEEh
Confidence 4688999999999999999999994 44 33 223555543
No 264
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=68.37 E-value=24 Score=24.37 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.2
Q ss_pred EEEEeCC---CCchHHHHHHHHHHCCceEEEE
Q 014457 303 LEICTQN---RMGLLSDVTRAFRENGLSVSMA 331 (424)
Q Consensus 303 lev~~~D---rpGLL~~Itr~l~e~gl~I~~A 331 (424)
+++.+.+ .+|.++++.++|.+++++|...
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i 34 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMI 34 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEE
Confidence 4555444 8999999999999999999884
No 265
>PRK14644 hypothetical protein; Provisional
Probab=68.34 E-value=47 Score=29.11 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=54.0
Q ss_pred HHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cCCCceEEEEEeC--CCCchHHH
Q 014457 241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RVSHGLRLEICTQ--NRMGLLSD 316 (424)
Q Consensus 241 ~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~~~~~~lev~~~--DrpGLL~~ 316 (424)
.++..+|+.+.+......++..+-..|| +.. .+ +.++.+.+.|.++|.. ..+..+.|||+++ ||| |..
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~I-dk~--~i---ddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldRp--L~~ 77 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVIL-NSR--DL---KDIEELTKEISDFIDNLSVEFDFDSLDISSPGFDMD--YET 77 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEE-CCC--CH---HHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCC--CCH
Confidence 4678999999999999876644445556 222 23 6789999999998863 3457899999987 888 333
Q ss_pred HHHHHHHCCc
Q 014457 317 VTRAFRENGL 326 (424)
Q Consensus 317 Itr~l~e~gl 326 (424)
...-+-.|=
T Consensus 78 -~~f~r~~G~ 86 (136)
T PRK14644 78 -DELENHIGE 86 (136)
T ss_pred -HHHHHhCCC
Confidence 354444453
No 266
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=68.03 E-value=20 Score=31.32 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED 129 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d 129 (424)
..+.-..+.+.-.||.|.|+++-.++++.+|||..-+-+- .+|+|--..-+.-
T Consensus 68 ~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 68 LKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 3344567888999999999999999999999999988776 7888887777754
No 267
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.36 E-value=44 Score=24.11 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=28.0
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
+.|.++|. +.||+++++...|++.|+++.--...+
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666765 779999999999999999997665444
No 268
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=66.91 E-value=3.1e+02 Score=33.66 Aligned_cols=161 Identities=19% Similarity=0.156 Sum_probs=100.3
Q ss_pred CccEEEEeecCCCCeEEEEEEe-cCC--hhHHHHHHHHHHhC--CceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHH
Q 014457 208 TRTHVLIDSCKEKGYSVVNIKC-IDR--PKLLFDTLCALTDL--QYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQR 282 (424)
Q Consensus 208 ~~p~V~v~~~~~~~~tvV~V~~-~DR--pgLL~~i~~~L~~~--gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~ 282 (424)
....+.+..+....+.-+-|+- +|| ..+-.+|-..|.+. +-.+..-...+.+..+.--|+|+...+....- ..
T Consensus 327 ~rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~--d~ 404 (1528)
T PF05088_consen 327 RRVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDI--DV 404 (1528)
T ss_pred CceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCC--CH
Confidence 3456666666666666555554 344 56788888888765 44444333344666777778887766654221 23
Q ss_pred HHHHHHHHHHHh-----------h------------c----CC-------------------------------------
Q 014457 283 QKLTQCLIAAIE-----------R------------R----VS------------------------------------- 298 (424)
Q Consensus 283 ~~l~~~L~~al~-----------r------------r----~~------------------------------------- 298 (424)
++|++.|.++.. . + +|
T Consensus 405 ~~le~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~ 484 (1528)
T PF05088_consen 405 EALEARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAG 484 (1528)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCC
Confidence 445555443320 0 0 00
Q ss_pred ---CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEE---eec-C-CceeeEEEEEeCCCCCCChHHHHHHHHHHHhhh
Q 014457 299 ---HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEI---GTN-G-EKATGSFYVMDASGHDVNQRTVELLKQEIGGSV 370 (424)
Q Consensus 299 ---~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i---~T~-g-~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~ 370 (424)
..+.+.|....++..|++|.-+|..+|+.|....- ... | ..-...|++....+..++ ++.+++.+.+++
T Consensus 485 ~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~---~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 485 AGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALD---LDDIRERFEEAF 561 (1528)
T ss_pred CCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCcccc---HHHHHHHHHHHH
Confidence 13688999999999999999999999999987653 332 2 226788999888777655 344455555544
Q ss_pred hhh
Q 014457 371 LVV 373 (424)
Q Consensus 371 ~~~ 373 (424)
..|
T Consensus 562 ~~v 564 (1528)
T PF05088_consen 562 EAV 564 (1528)
T ss_pred HHH
Confidence 443
No 269
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=66.90 E-value=48 Score=26.40 Aligned_cols=61 Identities=21% Similarity=0.327 Sum_probs=45.3
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeec--CCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN--GEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~--g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
+.++|.+.++|+.|.+|.|+-+-.|..|.....++. ++.+-=-|-| |. .+| ++.|..+|.+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~s-~R~-----~~lL~~QLeK 66 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-DS-DRS-----VDLLTSQLEK 66 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-cC-CCC-----hHHHHHHHHH
Confidence 679999999999999999999999999999887776 3444334444 43 344 3456666655
No 270
>PRK09181 aspartate kinase; Validated
Probab=66.75 E-value=85 Score=33.38 Aligned_cols=32 Identities=25% Similarity=0.128 Sum_probs=27.2
Q ss_pred CCcEEEEEEeC---CcchHHHHHHHHHHHcCceEe
Q 014457 79 TENTALEVTGV---DRPGLMSEISAVLYELGCHVP 110 (424)
Q Consensus 79 ~~~t~iev~~~---DRpGLLs~I~~vL~~~~~~I~ 110 (424)
.+.+.|+|.+. +.||++++|..+|.++|++|.
T Consensus 327 ~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~ 361 (475)
T PRK09181 327 DKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI 361 (475)
T ss_pred CCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE
Confidence 35677787654 689999999999999999997
No 271
>PRK14635 hypothetical protein; Provisional
Probab=65.64 E-value=55 Score=29.51 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeec---CCCCCCCHHHHHHHHHHHHHHHhhc-CCCceEEEEE
Q 014457 231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQT---DGCTLDTESQRQKLTQCLIAAIERR-VSHGLRLEIC 306 (424)
Q Consensus 231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~---~g~~~~~~~~~~~l~~~L~~al~rr-~~~~~~lev~ 306 (424)
+..-+-.-+...+. .|+.+.+..+...++..+-..||... +|. ++ =+.++.+.+.+.+.|... ....|.|||+
T Consensus 4 ~~~~i~~l~~~~~~-~g~el~dve~~~~~~~~~lrV~ID~~~~~~~g-v~-lddC~~vSr~is~~LD~~d~~~~Y~LEVS 80 (162)
T PRK14635 4 SEEEISEILDRVLA-LPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGS-VS-LLECEQVSRKLKEELERISPDLDFTLKVS 80 (162)
T ss_pred cHHHHHHHHHHHHC-CCCEEEEEEEEecCCCcEEEEEEecCCCCCCC-cC-HHHHHHHHHHHHHHhCCCCCCCCeEEEEc
Confidence 33444444555664 69999999999877654445566322 232 32 258999999999988743 2358999999
Q ss_pred eCCCCchHHHHHHHHHHCCceEE
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVS 329 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~ 329 (424)
++.=---|..--..-+-.|-.|.
T Consensus 81 SPGldRpL~~~~~~~r~~G~~v~ 103 (162)
T PRK14635 81 SAGAERKLRLPEDLDRFRGIPVR 103 (162)
T ss_pred CCCCCCcCCCHHHHHHhCCCEEE
Confidence 87433345555556666665553
No 272
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=65.43 E-value=1.2e+02 Score=34.55 Aligned_cols=100 Identities=5% Similarity=-0.061 Sum_probs=65.1
Q ss_pred CCeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHH-Hhh
Q 014457 220 KGYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAA-IER 295 (424)
Q Consensus 220 ~~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~a-l~r 295 (424)
++.+.|+|.+. +.||.+.++..+|.+.|++|..-...+. +. .-.|.+.. ...+++.+.|++. ...
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~---------~~~~~~~~~l~~~~~~~ 383 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTS---------EVADSALKLLDDAALPG 383 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeH---------HHHHHHHHHHHhhcCCC
Confidence 45678888765 8899999999999999999987653332 22 12243421 1223333434332 111
Q ss_pred cC---CCceEEEEEeC---CCCchHHHHHHHHHHCCceEEE
Q 014457 296 RV---SHGLRLEICTQ---NRMGLLSDVTRAFRENGLSVSM 330 (424)
Q Consensus 296 r~---~~~~~lev~~~---DrpGLL~~Itr~l~e~gl~I~~ 330 (424)
+. .+...|.|.+. .++|+..++..+|.+.|+++..
T Consensus 384 ~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~ 424 (810)
T PRK09466 384 ELKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW 424 (810)
T ss_pred cEEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence 11 12356777764 6899999999999999999855
No 273
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=65.25 E-value=11 Score=26.25 Aligned_cols=31 Identities=29% Similarity=0.492 Sum_probs=25.7
Q ss_pred EEEEEeCC---cchHHHHHHHHHHHcCceEeeEE
Q 014457 83 ALEVTGVD---RPGLMSEISAVLYELGCHVPAAV 113 (424)
Q Consensus 83 ~iev~~~D---RpGLLs~I~~vL~~~~~~I~~A~ 113 (424)
.|++.+.+ .||.++++..+|.+++++|..-.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~ 35 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMIS 35 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEE
Confidence 45666665 89999999999999999997654
No 274
>PRK14641 hypothetical protein; Provisional
Probab=64.52 E-value=62 Score=29.59 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=53.8
Q ss_pred HhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhc--C----CCceEEEEEeCCCCchHHHH
Q 014457 244 TDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERR--V----SHGLRLEICTQNRMGLLSDV 317 (424)
Q Consensus 244 ~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr--~----~~~~~lev~~~DrpGLL~~I 317 (424)
..+|+.+.+..+...++...-..||....|-.+ +.++.+.+.|.++|... . ...|.|||+++.=---|...
T Consensus 20 ~~~G~eLvdve~~~~~~~~~lrV~ID~~~gv~l---DdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldRpL~~~ 96 (173)
T PRK14641 20 KGEGVYLVSMTVKGSGKGRKIEVLLDADTGIRI---DQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGEPIILP 96 (173)
T ss_pred ccCCeEEEEEEEEeCCCCcEEEEEEeCCCCCCH---HHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCCcCCCH
Confidence 489999999999886653333455633334222 68999999999988743 2 25789999988444445555
Q ss_pred HHHHHHCCceE
Q 014457 318 TRAFRENGLSV 328 (424)
Q Consensus 318 tr~l~e~gl~I 328 (424)
-.+-+-.|=.|
T Consensus 97 ~~f~r~~G~~V 107 (173)
T PRK14641 97 RQYGRHVGRLL 107 (173)
T ss_pred HHHHHhCCCEE
Confidence 55555555433
No 275
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=63.70 E-value=44 Score=34.67 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=49.2
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eC-CeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcC
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KG-CFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRV 297 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~-~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~ 297 (424)
.....+.+.-|||||-|.+++..+...+.||.+-+-.- .+ +++ .+++.....+ ++..++|.+.|++.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~-~v~v~iE~~~-----~~h~~~i~~~L~~~----- 391 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETG-PALIGIELND-----KEDFAGLLERMAAA----- 391 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeE-EEEEEEEeCC-----HHHHHHHHHHHHHC-----
Confidence 45678999999999999999997777888999766542 22 222 2222222222 24667777777653
Q ss_pred CCceEEEEEeCC
Q 014457 298 SHGLRLEICTQN 309 (424)
Q Consensus 298 ~~~~~lev~~~D 309 (424)
++.++..+.|
T Consensus 392 --Gy~~~~~~~~ 401 (409)
T TIGR02079 392 --DIHYEDINEN 401 (409)
T ss_pred --CCCeEECCCC
Confidence 5556555554
No 276
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=63.69 E-value=21 Score=26.39 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=28.9
Q ss_pred eCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEec
Q 014457 88 GVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIED 129 (424)
Q Consensus 88 ~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d 129 (424)
.+|+||.++++..+|++.|++|....... .++...-.|.|..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~ 51 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPK 51 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecH
Confidence 36899999999999999999998554332 2223333455543
No 277
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=63.33 E-value=49 Score=40.17 Aligned_cols=166 Identities=20% Similarity=0.171 Sum_probs=103.9
Q ss_pred ccEEEEeec--CCCCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe--e-CC--eEEEEEEEeecCCCCCCCHHH
Q 014457 209 RTHVLIDSC--KEKGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS--K-GC--FADQEYFIRQTDGCTLDTESQ 281 (424)
Q Consensus 209 ~p~V~v~~~--~~~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T--~-~~--~a~d~F~V~~~~g~~~~~~~~ 281 (424)
+..|.+... ...+...+.++.+..|..|.++.-+|..+|+.|.+..-+. . ++ ..+..|++..+.+..++....
T Consensus 474 ~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~ 553 (1528)
T PF05088_consen 474 PLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDI 553 (1528)
T ss_pred CceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHH
Confidence 445555533 3346789999999999999999999999999999998765 2 22 677889999988876655556
Q ss_pred HHHHHHHHHHHHhhcCCC----ceEEE-EEeCCCCchHHHHHHHHHHCCceEEEEEEeec----C---CceeeEEEEEe-
Q 014457 282 RQKLTQCLIAAIERRVSH----GLRLE-ICTQNRMGLLSDVTRAFRENGLSVSMAEIGTN----G---EKATGSFYVMD- 348 (424)
Q Consensus 282 ~~~l~~~L~~al~rr~~~----~~~le-v~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~----g---~~a~d~Fyv~d- 348 (424)
.+.+++.|.+...++... ..++. =-+--..-||...++.+++.|+......|... . ..-++.|+.+-
T Consensus 554 ~~~~~~a~~~v~~g~~e~D~~n~Lvl~agL~wrev~lLRA~~~Yl~Q~~~~~s~~~i~~~l~~~p~i~~~L~~lF~~rf~ 633 (1528)
T PF05088_consen 554 RERFEEAFEAVWNGRAENDGFNRLVLSAGLTWREVALLRAYARYLRQIGFPFSQEYIEETLLAHPEIARLLVELFEARFD 633 (1528)
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 677777777766555432 11111 01123456889999999999887655544321 1 11344555432
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457 349 ASGHDVNQRTVELLKQEIGGSVLVVN 374 (424)
Q Consensus 349 ~~g~~v~~~~~~~lr~~l~~~~~~~~ 374 (424)
+......+...+.++++|.+.+-.|.
T Consensus 634 P~~~~~~~~~~~~~~~~i~~~l~~V~ 659 (1528)
T PF05088_consen 634 PDSQEAREAAQEELEEEIEEALDEVA 659 (1528)
T ss_pred CCccccchhHHHHHHHHHHHHHhhcC
Confidence 21112222345556666555444443
No 278
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.30 E-value=27 Score=24.44 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.0
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEI 333 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i 333 (424)
..|.+|++.++.+.|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 478899999999999999999988544
No 279
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=62.77 E-value=53 Score=25.10 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=37.4
Q ss_pred EEEEE---ecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 224 VVNIK---CIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 224 vV~V~---~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.|++. ..+.||+++++..+|++.|++|..-. + .+ .--.|.|...+ ...+.+.+..|.+.|+.
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~-s~-~~is~~v~~~~--~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--T-SE-VSVSLTLDPTK--NLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--c-CC-cEEEEEEEchh--hccchHHHHHHHHHHHh
Confidence 45553 36789999999999999999996653 2 22 22235554322 11112345566666654
No 280
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.84 E-value=12 Score=29.13 Aligned_cols=44 Identities=11% Similarity=0.245 Sum_probs=31.2
Q ss_pred EEEEE--E-eCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 82 TALEV--T-GVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 82 t~iev--~-~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
+.|+| . .+++||++++|..+|+++|+||---- |.. ..-.|.|..
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~s~--~~iSftv~~ 48 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--TSE--ISVALTLDN 48 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--ecC--CEEEEEEec
Confidence 34555 2 47889999999999999999997653 322 344555544
No 281
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=60.41 E-value=34 Score=29.89 Aligned_cols=65 Identities=18% Similarity=0.313 Sum_probs=42.9
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe-ecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG-TNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
-+.|.+.-.||.|.|+++..++++.++||....=+ ...++|-=+.-+ +.++-. ..++.+-++|+.
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi-~~ssm~---~~V~~ii~kl~k 137 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI-DTSSME---KDVDKIIEKLRK 137 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE-Echhhh---hhHHHHHHHHhc
Confidence 46788999999999999999999999999775432 123455444444 222211 245555555554
No 282
>PRK12483 threonine dehydratase; Reviewed
Probab=60.38 E-value=97 Score=33.39 Aligned_cols=88 Identities=8% Similarity=0.092 Sum_probs=54.9
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCC
Q 014457 271 TDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDAS 350 (424)
Q Consensus 271 ~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~ 350 (424)
..|..++. ..+.+.++..+-+ ..+...+.|.-+||||-|.++++++.+. ||...+-.....+...++..-...
T Consensus 321 lsGgNid~----~~l~~i~~r~l~~-~~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~ 393 (521)
T PRK12483 321 DSGANVNF----DRLRHVAERAELG-EQREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTH 393 (521)
T ss_pred eCCCCCCH----HHHHHHHHHHHHh-cCCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeC
Confidence 45555533 4455555554421 1234679999999999999999999999 887766655444445555443332
Q ss_pred CCCCChHHH-HHHHHHHHhh
Q 014457 351 GHDVNQRTV-ELLKQEIGGS 369 (424)
Q Consensus 351 g~~v~~~~~-~~lr~~l~~~ 369 (424)
+ .+.. ++|.++|.+.
T Consensus 394 ~----~~~~~~~i~~~l~~~ 409 (521)
T PRK12483 394 P----RHDPRAQLLASLRAQ 409 (521)
T ss_pred C----hhhhHHHHHHHHHHC
Confidence 1 2344 6676666553
No 283
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.16 E-value=62 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.5
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
..|.++|. ++||+++++...|++.|+++......+
T Consensus 2 ~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred eEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 35677775 689999999999999999998775544
No 284
>PRK08526 threonine dehydratase; Provisional
Probab=59.69 E-value=1.5e+02 Score=30.82 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc----eeeEEEEEeCCCCCCChHH
Q 014457 283 QKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK----ATGSFYVMDASGHDVNQRT 358 (424)
Q Consensus 283 ~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~----a~d~Fyv~d~~g~~v~~~~ 358 (424)
..+.+.++..+-+ ..+...+.+.-+||||-|.+++..+.+.|.||....-...... ...++...... +.+.
T Consensus 310 ~~~~~i~~~~l~~-~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~----~~~~ 384 (403)
T PRK08526 310 QMLNIIIEKGLIK-SYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETK----GKEH 384 (403)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeC----CHHH
Confidence 3455555555421 2235689999999999999999999999999998766433222 22222222221 2357
Q ss_pred HHHHHHHHHhh
Q 014457 359 VELLKQEIGGS 369 (424)
Q Consensus 359 ~~~lr~~l~~~ 369 (424)
+++|.+.|.+.
T Consensus 385 ~~~~~~~l~~~ 395 (403)
T PRK08526 385 QEEIRKILTEK 395 (403)
T ss_pred HHHHHHHHHHC
Confidence 77777777553
No 285
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=59.63 E-value=26 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=23.6
Q ss_pred eCCCCchHHHHHHHHHHCCceEEEEEE
Q 014457 307 TQNRMGLLSDVTRAFRENGLSVSMAEI 333 (424)
Q Consensus 307 ~~DrpGLL~~Itr~l~e~gl~I~~A~i 333 (424)
..|+||.++++.+.|.+.|++|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 468999999999999999999986543
No 286
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=58.28 E-value=28 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=25.4
Q ss_pred EEEEEeC---CCCchHHHHHHHHHHCCceEEEEE
Q 014457 302 RLEICTQ---NRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 302 ~lev~~~---DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
.|++.+. +++|+++++...|.+.++++....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~ 35 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMIS 35 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 3566444 889999999999999999997743
No 287
>PRK08841 aspartate kinase; Validated
Probab=57.88 E-value=77 Score=32.75 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=64.5
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCc
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHG 300 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~ 300 (424)
+.+.|++.+ +.+.++...|.+.|+++..-. +... .-.|+|.. ...++++..+...+. ...+-
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~--~~~~~v~~---------~~~~~~~~~~~~~i~-~~~~~ 318 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEAD--RAQIVIKQ---------DACAKLKLVFDDKIR-NSESV 318 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCC--cEEEEECH---------HHHHHHHHhCcccEE-EeCCE
Confidence 456777754 357889999999999988653 2111 11355521 223333222111110 11234
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEe
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMD 348 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d 348 (424)
..+.+.+...||+.+++.++|.++|++|.. +++ ......+|.+
T Consensus 319 a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~--i~~---s~~~is~vv~ 361 (392)
T PRK08841 319 SLLTLVGLEANGMVEHACNLLAQNGIDVRQ--CST---EPQSSMLVLD 361 (392)
T ss_pred EEEEEECCCChHHHHHHHHHHHhCCCCEEE--EEC---CCcEEEEEEe
Confidence 679999999999999999999999999966 443 2355544434
No 288
>PRK11898 prephenate dehydratase; Provisional
Probab=57.28 E-value=55 Score=32.23 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=41.4
Q ss_pred eEEEEEEec-CChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHH
Q 014457 222 YSVVNIKCI-DRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLI 290 (424)
Q Consensus 222 ~tvV~V~~~-DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~ 290 (424)
.+-+.+..+ ++||-|+++...|++.|+|+.+-...= .+....-.||| +.+|.. .+ ...+++...|+
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~v-d~eg~~-~~-~~~~~al~~L~ 263 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFI-DVEGHI-DD-VLVAEALKELE 263 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEE-EEEccC-CC-HHHHHHHHHHH
Confidence 344555554 469999999999999999999866543 23333345777 556653 23 23444444444
No 289
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=56.88 E-value=15 Score=27.70 Aligned_cols=33 Identities=3% Similarity=0.233 Sum_probs=23.6
Q ss_pred hhhhccCCceEEEEEEEeCCCEEEEEEEEEcCC
Q 014457 2 VQVLTDLELVISKSYISSDGGWFMDVFHVTDQL 34 (424)
Q Consensus 2 v~vL~~l~L~I~~A~I~t~~g~~~D~F~V~d~~ 34 (424)
.+.....|+.+-.=++.|+|||++.+|.+....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456678888888888899999999999997765
No 290
>PRK08526 threonine dehydratase; Provisional
Probab=56.63 E-value=65 Score=33.40 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=34.7
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT 116 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T 116 (424)
.......+.+.-+||||-|.+++.++...+.||..-.-..
T Consensus 322 ~~~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 322 KSYRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 4566788999999999999999999999999998776543
No 291
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=56.21 E-value=68 Score=22.50 Aligned_cols=32 Identities=25% Similarity=0.404 Sum_probs=26.5
Q ss_pred EEEEEeC---CcchHHHHHHHHHHHcCceEeeEEE
Q 014457 83 ALEVTGV---DRPGLMSEISAVLYELGCHVPAAVA 114 (424)
Q Consensus 83 ~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i 114 (424)
.|++.|. +++|+++++...|++.++++..-..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4677665 8899999999999999999976543
No 292
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=55.57 E-value=35 Score=25.54 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=29.0
Q ss_pred EEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeE-EEE
Q 014457 303 LEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGS-FYV 346 (424)
Q Consensus 303 lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~-Fyv 346 (424)
+.+.+. -+||+++++.++|.+.|+++...- +|....+. |.|
T Consensus 5 VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~---~~~s~~~is~~V 48 (66)
T cd04915 5 VSVIGRDLSTPGVLARGLAALAEAGIEPIAAH---QSMRNVDVQFVV 48 (66)
T ss_pred EEEECCCCCcchHHHHHHHHHHHCCCCEEEEE---ecCCeeEEEEEE
Confidence 444443 268999999999999999998733 34445555 444
No 293
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=55.39 E-value=2.1e+02 Score=29.65 Aligned_cols=81 Identities=6% Similarity=0.028 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEe-ecCCceeeEEEEEeCCCCCCChHHHHH
Q 014457 283 QKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIG-TNGEKATGSFYVMDASGHDVNQRTVEL 361 (424)
Q Consensus 283 ~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~-T~g~~a~d~Fyv~d~~g~~v~~~~~~~ 361 (424)
..+.+.++..+-+ ..+...+.+.-+||||=|.++++.+...+-||...+-. ..+.....++..-...+ .+.++.
T Consensus 309 ~~~~~~~~~~l~~-~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~----~~h~~~ 383 (409)
T TIGR02079 309 ERTEEIRERSLLY-EGLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND----KEDFAG 383 (409)
T ss_pred HHHHHHHHHHHHh-cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC----HHHHHH
Confidence 4555555555432 12346899999999999999999555565599865544 33322333333323221 356677
Q ss_pred HHHHHHh
Q 014457 362 LKQEIGG 368 (424)
Q Consensus 362 lr~~l~~ 368 (424)
+.+.|.+
T Consensus 384 i~~~L~~ 390 (409)
T TIGR02079 384 LLERMAA 390 (409)
T ss_pred HHHHHHH
Confidence 7776655
No 294
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=54.99 E-value=41 Score=35.48 Aligned_cols=53 Identities=6% Similarity=0.015 Sum_probs=37.2
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEee-CCeEE-EEEEEeecCCC
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSK-GCFAD-QEYFIRQTDGC 274 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~-~~~a~-d~F~V~~~~g~ 274 (424)
+.+-|.+..+|+||-|+++-..|+..|+|+.+-..--. ++... -.|||. .+|.
T Consensus 30 ~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD-~Eg~ 84 (464)
T TIGR01270 30 QRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVD-VELF 84 (464)
T ss_pred ceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEE-EEcC
Confidence 34556666699999999999999999999998665432 22222 357774 3454
No 295
>PRK02001 hypothetical protein; Validated
Probab=54.28 E-value=76 Score=28.37 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=52.7
Q ss_pred HHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHH
Q 014457 241 CALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRA 320 (424)
Q Consensus 241 ~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~ 320 (424)
.++..+|+.+.+..+...+ .+ ..+|...+|-.+ +.++.+.+.|.+.|... ...|.|||+++.=---|..--..
T Consensus 13 ~~~~~~g~eLvdv~~~~~~--~l-rV~ID~~~Gv~l---ddC~~vSr~is~~LD~~-d~~Y~LEVSSPGldRpL~~~~~f 85 (152)
T PRK02001 13 ELLEGPELFLVDLTISPDN--KI-VVEIDGDEGVWI---EDCVELSRAIEHNLDRE-EEDFELEVGSAGLTSPLKVPRQY 85 (152)
T ss_pred hhhhhcCcEEEEEEEEcCC--EE-EEEEECCCCCCH---HHHHHHHHHHHHHhcCC-CCCeEEEEeCCCCCCcCCCHHHH
Confidence 4567899999999887532 23 345533344333 68999999999988743 46789999988333335555555
Q ss_pred HHHCCceE
Q 014457 321 FRENGLSV 328 (424)
Q Consensus 321 l~e~gl~I 328 (424)
-+-.|-.|
T Consensus 86 ~r~~G~~v 93 (152)
T PRK02001 86 KKNIGREL 93 (152)
T ss_pred HHhCCCEE
Confidence 55555443
No 296
>PRK14642 hypothetical protein; Provisional
Probab=53.08 E-value=1.2e+02 Score=28.28 Aligned_cols=89 Identities=20% Similarity=0.031 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC-----------CCCCCCHHHHHHHHHHHHHHHhhcCCCceEE
Q 014457 235 LLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTD-----------GCTLDTESQRQKLTQCLIAAIERRVSHGLRL 303 (424)
Q Consensus 235 LL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~-----------g~~~~~~~~~~~l~~~L~~al~rr~~~~~~l 303 (424)
|-..+..++..+||.+.+..+.. ++ . -..||..++ +..++ -+.++.+.+.|..+|...-..++.|
T Consensus 3 l~~liepvv~~lG~eLvdve~~~-~~-~-LrV~ID~~~~~~~~~~~~~~~~gVt-idDC~~vSR~Is~~LDve~~~y~~L 78 (197)
T PRK14642 3 LQQIVEQTVTGLGYDLVEIERSA-GG-L-LRVTIDLPWVPPTEGAPVGPEQFVT-VEDCEKVTRQLQFALEVDGVDYKRL 78 (197)
T ss_pred HHHHHHHHHHHcCCEEEEEEEec-CC-E-EEEEEecCccccccccccccCCCcc-HHHHHHHHHHHHHHhcccCccccEE
Confidence 34456678899999999999764 33 2 334554321 11232 3589999999999997554456689
Q ss_pred EEEeCCCCchHHHHHHHHHHCCce
Q 014457 304 EICTQNRMGLLSDVTRAFRENGLS 327 (424)
Q Consensus 304 ev~~~DrpGLL~~Itr~l~e~gl~ 327 (424)
||+++.=---|...-.+-+-.|=.
T Consensus 79 EVSSPGldRPLk~~~df~rfiG~~ 102 (197)
T PRK14642 79 EVSSPGIDRPLRHEQDFERFAGEV 102 (197)
T ss_pred EEeCCCCCCCCCCHHHHHHhCCCe
Confidence 999874333355555555555543
No 297
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=52.42 E-value=70 Score=33.60 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=43.6
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.+-|.+..+|+||-|+++-..|+..|+|+.+-..-- .+....-.||| +.+|.. + ...+.+.+.|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFV-D~eg~~--~-~~v~~aL~~Lk~ 82 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFV-EFDEAS--D-RKLEGVIEHLRQ 82 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEE-EEecCc--c-HHHHHHHHHHHH
Confidence 456666669999999999999999999999866543 22222235788 445543 1 244455555544
No 298
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.00 E-value=89 Score=22.63 Aligned_cols=35 Identities=6% Similarity=0.022 Sum_probs=27.6
Q ss_pred EEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457 223 SVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISS 257 (424)
Q Consensus 223 tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T 257 (424)
..|.+.+. ++||+++++..+|.+.|++|.-....+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666654 789999999999999999997665433
No 299
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.61 E-value=95 Score=23.94 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=37.8
Q ss_pred ecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 229 CIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 229 ~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.++.||+++++..+|++.|++|..-. + +. .--.|.|...+.. +.. +..+.|.+.|++
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~~~~-~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPDPNG-LDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCcccc-cch-HHHHHHHHHHHh
Confidence 36889999999999999999999874 2 22 2234555443311 222 256777777765
No 300
>PRK08639 threonine dehydratase; Validated
Probab=51.53 E-value=97 Score=32.23 Aligned_cols=37 Identities=11% Similarity=-0.076 Sum_probs=30.5
Q ss_pred CCeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE
Q 014457 220 KGYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS 256 (424)
Q Consensus 220 ~~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~ 256 (424)
.....+.+.-|||||-|.+++..+...+.||.+-+-.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 4567899999999999999999777777799876543
No 301
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=50.43 E-value=25 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 89 VDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 89 ~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
.++||+.++|..+|+++|+++.-- .|.. ..-.|+|..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t~~--~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PTSE--NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ecCC--CEEEEEEeh
Confidence 367999999999999999999866 3422 445566654
No 302
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=50.31 E-value=20 Score=38.49 Aligned_cols=36 Identities=25% Similarity=0.133 Sum_probs=33.5
Q ss_pred EEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCC
Q 014457 83 ALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHK 118 (424)
Q Consensus 83 ~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~ 118 (424)
.++|.|.||.|+..+|..+|...++|+..-+|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 489999999999999999999999999999997764
No 303
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=49.67 E-value=1.1e+02 Score=23.11 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.6
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCceEeeEEEEcCC
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCHVPAAVAWTHK 118 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~I~~A~i~T~~ 118 (424)
+.|++.|. +.+|+++++..+|++.++++..-...+.+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 45677554 68999999999999999999766554433
No 304
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=49.60 E-value=1.1e+02 Score=27.56 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=27.5
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEE
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFH 252 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~ 252 (424)
...+.|.-+|+||-|-.+-.=|+.+|.||..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiIt 35 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIIT 35 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEE
Confidence 3567888999999999999999999999875
No 305
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=46.90 E-value=85 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.3
Q ss_pred EEEEE---eCCCCchHHHHHHHHHHCCceEEEEEEe
Q 014457 302 RLEIC---TQNRMGLLSDVTRAFRENGLSVSMAEIG 334 (424)
Q Consensus 302 ~lev~---~~DrpGLL~~Itr~l~e~gl~I~~A~i~ 334 (424)
.+++. ..+.+|+++++.++|.++|+++....-+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 45663 3478999999999999999999885443
No 306
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=46.15 E-value=30 Score=29.64 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHHCCceEEEEEEeecC
Q 014457 308 QNRMGLLSDVTRAFRENGLSVSMAEIGTNG 337 (424)
Q Consensus 308 ~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g 337 (424)
-|-+|+|+.|.+.|+++||.|.- ++|+.
T Consensus 74 FgltGilasV~~pLsd~gigIFa--vStyd 101 (128)
T COG3603 74 FGLTGILASVSQPLSDNGIGIFA--VSTYD 101 (128)
T ss_pred CCcchhhhhhhhhHhhCCccEEE--EEecc
Confidence 48899999999999999999987 77774
No 307
>PRK08639 threonine dehydratase; Validated
Probab=46.04 E-value=1.2e+02 Score=31.49 Aligned_cols=69 Identities=12% Similarity=0.067 Sum_probs=43.1
Q ss_pred CCCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 77 VSTENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 77 ~~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
.+.....+.+.-+||||-|.++..++...+.||..-+-.- .+.....++..-. ..+++..++|.+.|.+
T Consensus 332 ~~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 332 YEGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred hcCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 3556788999999999999999997777666998765331 2222222222211 1234565677776644
No 308
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.58 E-value=67 Score=25.26 Aligned_cols=54 Identities=11% Similarity=0.230 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHh
Q 014457 308 QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGG 368 (424)
Q Consensus 308 ~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~ 368 (424)
....|++.++..+|.++|+++++ +. ...|.|-|.-. ...++++.++.+.++|..
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh--~P----SGID~~Siii~-~~~~~~~~~~~i~~~i~~ 65 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEH--MP----SGIDDISIIIR-DNQLTDEKEQKILAEIKE 65 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEee--ec----CCCccEEEEEE-ccccchhhHHHHHHHHHH
Confidence 45689999999999999999998 43 34555555332 334444344455455444
No 309
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=44.94 E-value=1.1e+02 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=25.1
Q ss_pred EEEEEe---CCcchHHHHHHHHHHHcCceEeeEE
Q 014457 83 ALEVTG---VDRPGLMSEISAVLYELGCHVPAAV 113 (424)
Q Consensus 83 ~iev~~---~DRpGLLs~I~~vL~~~~~~I~~A~ 113 (424)
.|.+.+ .+.||++.++...|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355554 4679999999999999999996654
No 310
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.72 E-value=1.1e+02 Score=21.49 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=25.1
Q ss_pred EEEEEe---CCcchHHHHHHHHHHHcCceEeeEE
Q 014457 83 ALEVTG---VDRPGLMSEISAVLYELGCHVPAAV 113 (424)
Q Consensus 83 ~iev~~---~DRpGLLs~I~~vL~~~~~~I~~A~ 113 (424)
.|++.| .+.||+++++...|.+.++++..-.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 356655 3679999999999999999996654
No 311
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.60 E-value=1.3e+02 Score=22.12 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=22.4
Q ss_pred EEEEEeC---CcchHHHHHHHHHHHcCceE
Q 014457 83 ALEVTGV---DRPGLMSEISAVLYELGCHV 109 (424)
Q Consensus 83 ~iev~~~---DRpGLLs~I~~vL~~~~~~I 109 (424)
.|.++|. +.||+++++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 67999999999999987766
No 312
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.97 E-value=22 Score=27.98 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=27.4
Q ss_pred CCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEec
Q 014457 89 VDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIED 129 (424)
Q Consensus 89 ~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d 129 (424)
++.||.+++|..+|+++|+||---- |.. ..-.|.|..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--qs~--~sISftV~~ 48 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--TSE--VSISLTLDP 48 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--ecC--CEEEEEEEh
Confidence 6789999999999999999997653 322 334455544
No 313
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.03 E-value=1.1e+02 Score=22.60 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=27.7
Q ss_pred EEEEEeC--CcchHHHHHHHHHHHcCceEeeEEEEcC
Q 014457 83 ALEVTGV--DRPGLMSEISAVLYELGCHVPAAVAWTH 117 (424)
Q Consensus 83 ~iev~~~--DRpGLLs~I~~vL~~~~~~I~~A~i~T~ 117 (424)
.|.++|. ..||+++++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4666665 3689999999999999999987665554
No 314
>PLN02317 arogenate dehydratase
Probab=40.09 E-value=1.7e+02 Score=30.32 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=40.4
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCce---------------EEEEEEEecCCCCC
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTR---------------AACIFYIEDGLEGR 134 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r---------------~~dvf~V~d~~~g~ 134 (424)
.|.|-+.-.|+||-|+++-.+|+..|+|+..-+--....+ ..-.|||.= ++.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~--eg~ 349 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF--EAS 349 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE--EcC
Confidence 5888888899999999999999999999987765543222 456888854 454
No 315
>PLN02550 threonine dehydratase
Probab=38.86 E-value=3.8e+02 Score=29.44 Aligned_cols=136 Identities=12% Similarity=0.131 Sum_probs=70.7
Q ss_pred EEecCChhHHHHHHHHHHhCCceEEEEEEEeeCC---e-----EEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 014457 227 IKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC---F-----ADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVS 298 (424)
Q Consensus 227 V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~---~-----a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~ 298 (424)
++.-+-..+...+-..+...++.+.-+-.....+ + .-+.=.|.-..|..++. ..+.+.++.++.++ -
T Consensus 341 vV~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vlsGgNid~----~~l~~v~~~~~~~~-~ 415 (591)
T PLN02550 341 VVLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAITSGANMNF----DRLRIVTELADVGR-Q 415 (591)
T ss_pred EEEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCCCH----HHHHHHHHHHHhcc-C
Confidence 3444555566666666666776666542211000 0 00000122234554533 33433344333211 1
Q ss_pred CceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhh
Q 014457 299 HGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVV 373 (424)
Q Consensus 299 ~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~ 373 (424)
+...+.|.-+||||-|.++++++.+. ||...+-.-..-.-..+++..... +.+.+++|.++|.+.=..+
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~----~~~~~~~i~~~l~~~g~~~ 484 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGVH----TEQELQALKKRMESAQLRT 484 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEeC----CHHHHHHHHHHHHHCCCCe
Confidence 23678999999999999999999987 776655443222223334333322 3356777777776643333
No 316
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=38.81 E-value=4.7e+02 Score=27.20 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=28.3
Q ss_pred CeEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEE
Q 014457 221 GYSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAA 254 (424)
Q Consensus 221 ~~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~ 254 (424)
+.+.|.|.+ ++.||+++++..+|++.|+||....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 456777754 4789999999999999999997664
No 317
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=38.40 E-value=1.7e+02 Score=31.22 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 78 STENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 78 ~~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
......+.|.-+||||=|.+++.+|.. .||..-+-.-.+..-+-+|..-. +.+++.++.|.+.|.+
T Consensus 322 ~~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 322 EQREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 345678899999999999999999997 46665443333333344444322 1234566777776644
No 318
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism]
Probab=38.17 E-value=85 Score=31.40 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=61.1
Q ss_pred ecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCC--CCCCCHHHHHHHHH--HHHHHHh----------
Q 014457 229 CIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDG--CTLDTESQRQKLTQ--CLIAAIE---------- 294 (424)
Q Consensus 229 ~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g--~~~~~~~~~~~l~~--~L~~al~---------- 294 (424)
-.-.|.-|.+..+.|+.++-|+..-.+....+-|. +...+.-+ ..+.++ +.+.+-. -|++.|+
T Consensus 189 VlSHPQal~Qce~~L~~l~~~~~r~a~~dTa~Aa~--~~s~~~~~d~~AIASe-~aA~ly~l~Il~~~IqDd~~NvTRFL 265 (377)
T KOG2797|consen 189 VLSHPQALGQCECSLTKLGPNAAREAVSDTAGAAE--QISASNTADTAAIASE-RAAELYGLNILEKNIQDDLGNVTRFL 265 (377)
T ss_pred eecCcHHHHHHHHHHHhcccceeeeeccchHHHHH--HHHhcccccHHHHHHH-HHHHHhcchhhhhhcccccCCeeEEE
Confidence 34579999999999999999877766654332111 11111111 122221 2222211 2223332
Q ss_pred --hc---CCC-----ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEee
Q 014457 295 --RR---VSH-----GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGT 335 (424)
Q Consensus 295 --rr---~~~-----~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T 335 (424)
+| .|+ .+.|--.-.+-||.|+++-.+|+-+.|++++.+...
T Consensus 266 mLar~p~ip~t~rl~ktsivf~~~~gp~vLfkvl~vfa~r~inltkIesRP 316 (377)
T KOG2797|consen 266 MLAREPIIPDTDRLFKTSIVFFREKGPGVLFKVLSVFAFRSINLTKIESRP 316 (377)
T ss_pred EEeccCCCCCCCccceeeEEEEeecCCchHHHHHHHHHhhhceeeeeeccc
Confidence 11 111 344444578999999999999999999999977665
No 319
>PRK00907 hypothetical protein; Provisional
Probab=38.05 E-value=1.8e+02 Score=23.74 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=37.2
Q ss_pred cEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEc----CCceEEEEEEEec
Q 014457 81 NTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWT----HKTRAACIFYIED 129 (424)
Q Consensus 81 ~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T----~~~r~~dvf~V~d 129 (424)
..-|.|.|.+.++|...|..++..+........+.. .|....-.+.|+-
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 378999999999999999999999988777666643 4444444555544
No 320
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.93 E-value=1.5e+02 Score=21.18 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=26.4
Q ss_pred EEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEE
Q 014457 224 VVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAIS 256 (424)
Q Consensus 224 vV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~ 256 (424)
.|.+.+ ++.|+++.++...|++.|++|.-....
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 455555 478999999999999999999766543
No 321
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=36.40 E-value=1.2e+02 Score=24.17 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=36.2
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCC
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTL 276 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~ 276 (424)
....+.+.+.| +......|..+|++|........ +.. ..||++|++|..+
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~-~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIP-GVG-RFAVFADPEGAVF 110 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccC-CcE-EEEEEECCCCCEE
Confidence 45577778888 66777888999999887654333 222 3699999999864
No 322
>PRK09224 threonine dehydratase; Reviewed
Probab=36.13 E-value=3.8e+02 Score=28.70 Aligned_cols=80 Identities=11% Similarity=0.053 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHH-HHH
Q 014457 283 QKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRT-VEL 361 (424)
Q Consensus 283 ~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~-~~~ 361 (424)
.+|.+.++.++-++ .+-..+.|.-+||||=|.+++++|. +-||+..+-.-.+.....+|......+ .+. ++.
T Consensus 312 ~~l~~~~~r~~~~~-~re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~----~~~~~~~ 384 (504)
T PRK09224 312 DRLRYVAERAELGE-QREALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSR----GQEERAE 384 (504)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCC----hhhHHHH
Confidence 45666666554221 1245789999999999999999999 577776555444444555665544322 133 667
Q ss_pred HHHHHHhh
Q 014457 362 LKQEIGGS 369 (424)
Q Consensus 362 lr~~l~~~ 369 (424)
|.+.|.+.
T Consensus 385 i~~~L~~~ 392 (504)
T PRK09224 385 IIAQLRAH 392 (504)
T ss_pred HHHHHHHc
Confidence 77776553
No 323
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=34.84 E-value=1.4e+02 Score=30.94 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=76.5
Q ss_pred CeEEEEEEec---CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHh--h
Q 014457 221 GYSVVNIKCI---DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIE--R 295 (424)
Q Consensus 221 ~~tvV~V~~~---DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~--r 295 (424)
+-++++|.+. -.-|.|+.|-.+|.+.|+.|-- |.|..-.+.-..+. .+. .-++.|+..|.++.+ +
T Consensus 392 nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDv--vaTSEV~iSltL~~-----~~~---~sreliq~~l~~a~eeL~ 461 (559)
T KOG0456|consen 392 NVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDV--VATSEVSISLTLDP-----SKL---DSRELIQGELDQAVEELE 461 (559)
T ss_pred cEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEE--EEeeeEEEEEecCh-----hhh---hhHHHHHhhHHHHHHHHH
Confidence 4567777654 4578999999999999988753 22311111111111 111 123444455544432 1
Q ss_pred cC------CCceEEEEEe--CCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHH
Q 014457 296 RV------SHGLRLEICT--QNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIG 367 (424)
Q Consensus 296 r~------~~~~~lev~~--~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~ 367 (424)
+. ....+|.+.+ ..-.|++-+.-++|+++|+||+. | ++|...+|.=.|.|.. -..+.++.|..++.
T Consensus 462 ki~~vdll~~~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqM--I-SQGAskvNIS~ivne~---ea~k~v~~lH~~~~ 535 (559)
T KOG0456|consen 462 KIAVVDLLKGRSIISLIGNVQNSSGILERMFCVLAENGINVQM--I-SQGASKVNISCIVNEK---EAEKCVQALHKAFF 535 (559)
T ss_pred HhhhhhhhccchHHhhhhhhhhhhHHHHHHHHHHHhcCcceee--e-ccccccceEEEEEChH---HHHHHHHHHHHHHc
Confidence 11 0122444444 46689999999999999999998 4 3677777776665541 11124555555555
Q ss_pred h
Q 014457 368 G 368 (424)
Q Consensus 368 ~ 368 (424)
+
T Consensus 536 e 536 (559)
T KOG0456|consen 536 E 536 (559)
T ss_pred C
Confidence 5
No 324
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.94 E-value=95 Score=21.91 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=24.7
Q ss_pred EEEEe---CCCCchHHHHHHHHHHCCceEEEEE
Q 014457 303 LEICT---QNRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 303 lev~~---~DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
+.+.+ .+.+|++.++...|.++|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4779999999999999999998753
No 325
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=32.66 E-value=3.1e+02 Score=32.07 Aligned_cols=66 Identities=6% Similarity=-0.051 Sum_probs=50.5
Q ss_pred ccEEEEeecCC-CCeEEEEE---EecCChhHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEeecCCC
Q 014457 209 RTHVLIDSCKE-KGYSVVNI---KCIDRPKLLFDTLCALTDLQYVVFHAAISS-KGCFADQEYFIRQTDGC 274 (424)
Q Consensus 209 ~p~V~v~~~~~-~~~tvV~V---~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T-~~~~a~d~F~V~~~~g~ 274 (424)
.|.+.+...+. .....+.+ ..+...++|..+...+..+|+.+..+-+.+ .+|..+-+|||+...+.
T Consensus 216 g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 216 GPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 47777766552 23334444 567788999999999999999999999998 56777779999876654
No 326
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=32.55 E-value=71 Score=23.96 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.4
Q ss_pred EEEEEeC-CcchHHHHHHHHHHHcCceEeeE
Q 014457 83 ALEVTGV-DRPGLMSEISAVLYELGCHVPAA 112 (424)
Q Consensus 83 ~iev~~~-DRpGLLs~I~~vL~~~~~~I~~A 112 (424)
.|+|.+. +.||.+++|.+.|++.|+||---
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 3445543 56999999999999999999877
No 327
>PRK00907 hypothetical protein; Provisional
Probab=31.37 E-value=1.6e+02 Score=24.07 Aligned_cols=64 Identities=16% Similarity=0.071 Sum_probs=46.2
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEE----eeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAIS----SKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~----T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.+-+.|.+.+.+++...|..++..+.-.....++. +.|.|.--++.|+- .+.++++.|-+.|.+
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~ 84 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRD 84 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhh
Confidence 36899999999999999999999887666555553 34556655555532 334677778777764
No 328
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=31.33 E-value=1.3e+02 Score=22.63 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=24.2
Q ss_pred HHHHHhCCceEEEEEEEeeCCeEEEEEEEeecC
Q 014457 240 LCALTDLQYVVFHAAISSKGCFADQEYFIRQTD 272 (424)
Q Consensus 240 ~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~ 272 (424)
.......||.++.=.|.|.+|+.+..|-|....
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 456788999999999999999999999997655
No 329
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=31.24 E-value=6.5e+02 Score=26.56 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=27.2
Q ss_pred eEEEEEEe---cCChhHHHHHHHHHHhCCceEEEEE
Q 014457 222 YSVVNIKC---IDRPKLLFDTLCALTDLQYVVFHAA 254 (424)
Q Consensus 222 ~tvV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~ 254 (424)
...|.+.+ +..||..+++..+|++.++||....
T Consensus 383 ~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 383 LALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred eeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 44555554 5789999999999999999999877
No 330
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.63 E-value=2e+02 Score=20.50 Aligned_cols=33 Identities=6% Similarity=-0.054 Sum_probs=26.6
Q ss_pred EEEEEe---cCChhHHHHHHHHHHhCCceEEEEEEE
Q 014457 224 VVNIKC---IDRPKLLFDTLCALTDLQYVVFHAAIS 256 (424)
Q Consensus 224 vV~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~I~ 256 (424)
.|.+.+ +++|+++.++...|++.|++|.-....
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEec
Confidence 455655 478999999999999999999876543
No 331
>PRK05925 aspartate kinase; Provisional
Probab=30.51 E-value=6.6e+02 Score=26.40 Aligned_cols=111 Identities=16% Similarity=0.063 Sum_probs=64.5
Q ss_pred CeEEEEEEec-CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhh--cC
Q 014457 221 GYSVVNIKCI-DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIER--RV 297 (424)
Q Consensus 221 ~~tvV~V~~~-DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~r--r~ 297 (424)
+.+.|++.+. ..+|.+.++...|.+.|++|.... .+.. --.|.|...+ .. +..++ .|...+.. +.
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~---~~-~~~~~----~l~~~l~~~~~i 366 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDD---IS-EEYPQ----HLTDALSAFGTV 366 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechh---cc-HHHHH----HHHHHhcCCceE
Confidence 4567777543 257889999999999999997652 1111 1235554321 10 11122 22222221 11
Q ss_pred ---CCceEEEEEeC--CCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEE
Q 014457 298 ---SHGLRLEICTQ--NRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVM 347 (424)
Q Consensus 298 ---~~~~~lev~~~--DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~ 347 (424)
.+-..+.|.+. -.+|+.+++..+|.+.|++|.. +++ ++... .|.|.
T Consensus 367 ~~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~--i~~-s~~~i-s~vV~ 417 (440)
T PRK05925 367 SCEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC--WCQ-SDMAL-NLVVN 417 (440)
T ss_pred EEECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE--EEC-CCceE-EEEEe
Confidence 12345677665 2378999999999999999966 443 33322 46663
No 332
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.18 E-value=2.3e+02 Score=20.73 Aligned_cols=27 Identities=11% Similarity=-0.081 Sum_probs=21.9
Q ss_pred EEEEEec---CChhHHHHHHHHHHhCCceE
Q 014457 224 VVNIKCI---DRPKLLFDTLCALTDLQYVV 250 (424)
Q Consensus 224 vV~V~~~---DRpgLL~~i~~~L~~~gl~I 250 (424)
.|.+.+. +.||++.++..+|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 78999999999999987666
No 333
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=28.49 E-value=7.3e+02 Score=27.27 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 014457 231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNR 310 (424)
Q Consensus 231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~Dr 310 (424)
+-+..+.+++..+.++|. |.+++.|..|.. .+.+..++.+.|.+.+ ...|++.+.|.
T Consensus 152 ~~~~~~~~~a~~l~~~Ga---------------d~i~i~Dt~G~l--~P~~~~~lv~~lk~~~------~~pi~~H~Hnt 208 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGV---------------DSLCIKDMAGLL--KPYAAYELVSRIKKRV------DVPLHLHCHAT 208 (593)
T ss_pred cCHHHHHHHHHHHHHcCC---------------CEEEECCCCCCc--CHHHHHHHHHHHHHhc------CCeEEEEECCC
Confidence 445677777777777775 456778888863 3456777777776554 24699999999
Q ss_pred CchHHHHHHHHHHCCceEEEEEEeecCCcee
Q 014457 311 MGLLSDVTRAFRENGLSVSMAEIGTNGEKAT 341 (424)
Q Consensus 311 pGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~ 341 (424)
.|+=..-+-+=.+.|+++....++-.|+++-
T Consensus 209 ~GlA~An~laAieAGa~~vD~ai~glG~~~G 239 (593)
T PRK14040 209 TGLSTATLLKAIEAGIDGVDTAISSMSMTYG 239 (593)
T ss_pred CchHHHHHHHHHHcCCCEEEecccccccccc
Confidence 9998887888889999999999999988743
No 334
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=28.07 E-value=58 Score=24.47 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=24.1
Q ss_pred EEEEeC-CCCchHHHHHHHHHHCCceEEEE
Q 014457 303 LEICTQ-NRMGLLSDVTRAFRENGLSVSMA 331 (424)
Q Consensus 303 lev~~~-DrpGLL~~Itr~l~e~gl~I~~A 331 (424)
+.|... +.||.+++|...|.++|++|-..
T Consensus 4 vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 4 IKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 444433 56999999999999999999997
No 335
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=27.93 E-value=50 Score=25.45 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCCCcHHHHHHHHHHHHH
Q 014457 90 DRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPITAPEMLAHVEEQLEI 151 (424)
Q Consensus 90 DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i~d~~~~~~i~~~L~~ 151 (424)
-.||++++|..+|+++|+||---- +.. ..-.|.|.. + . +.+ +.++.|.+.|.+
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~s~--~~isftv~~--~-~-~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--TSE--VHVSMALHM--E-N-AED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--eCC--CEEEEEEeh--h-h-cCh-HHHHHHHHHHHH
Confidence 358999999999999999997653 322 333444443 1 1 222 255666666654
No 336
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=27.50 E-value=1.1e+02 Score=23.60 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=25.7
Q ss_pred EEEEEEeCC---cchHHHHHHHHHHHcCceEeeE
Q 014457 82 TALEVTGVD---RPGLMSEISAVLYELGCHVPAA 112 (424)
Q Consensus 82 t~iev~~~D---RpGLLs~I~~vL~~~~~~I~~A 112 (424)
+.|+|...| .+|.-++|..+|++++++|..=
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K 35 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK 35 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE
Confidence 356677666 5789999999999999999876
No 337
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=26.95 E-value=5.4e+02 Score=30.15 Aligned_cols=46 Identities=9% Similarity=0.046 Sum_probs=39.5
Q ss_pred eCCcchHHHHHHHHHHHcCceEeeEEEEc-CCceEEEEEEEecCCCCC
Q 014457 88 GVDRPGLMSEISAVLYELGCHVPAAVAWT-HKTRAACIFYIEDGLEGR 134 (424)
Q Consensus 88 ~~DRpGLLs~I~~vL~~~~~~I~~A~i~T-~~~r~~dvf~V~d~~~g~ 134 (424)
.+...|+|+.|+.++..+||.+..+.+-+ .+|-....|||+.. .+.
T Consensus 240 ~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~-~~~ 286 (1002)
T PTZ00324 240 RYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL-TAD 286 (1002)
T ss_pred CCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC-CCC
Confidence 34556999999999999999999999999 58888899999873 444
No 338
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=26.28 E-value=1.6e+02 Score=23.51 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=35.2
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCC
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTL 276 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~ 276 (424)
+...+.+...|+..+ ..+...+...|+.|...-.....|+ .|+++|++|..+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445677777776555 4466667789999876543333343 589999999854
No 339
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.60 E-value=2.7e+02 Score=20.37 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=26.1
Q ss_pred EEEEEec--CChhHHHHHHHHHHhCCceEEEEEEEe
Q 014457 224 VVNIKCI--DRPKLLFDTLCALTDLQYVVFHAAISS 257 (424)
Q Consensus 224 vV~V~~~--DRpgLL~~i~~~L~~~gl~I~~A~I~T 257 (424)
.|.+.+. ..||++.++..+|.+.|++|.-....+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4555554 468999999999999999997655444
No 340
>PRK14646 hypothetical protein; Provisional
Probab=25.23 E-value=4.9e+02 Score=23.18 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457 313 LLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN 374 (424)
Q Consensus 313 LL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 374 (424)
+..-+..++.++|+.+...++...|....=..|+...+|..++-..++.+.++|.+ +|.+.
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~-~LD~~ 69 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASE-EIENS 69 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHH-HhCcC
Confidence 44567788899999999999998887766677784444556776788999999888 55654
No 341
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.66 E-value=1.6e+02 Score=23.50 Aligned_cols=50 Identities=16% Similarity=0.371 Sum_probs=35.0
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCc-eeeEEEEEeCCCCCC
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEK-ATGSFYVMDASGHDV 354 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~-a~d~Fyv~d~~g~~v 354 (424)
-+-+...+. +..+.+.|.++|+.+...-....+.. ....||+.|++|..+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 344555544 88889999999999876544333322 346799999999876
No 342
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=24.63 E-value=2.5e+02 Score=19.60 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=24.5
Q ss_pred EEEEe---cCChhHHHHHHHHHHhCCceEEEEE
Q 014457 225 VNIKC---IDRPKLLFDTLCALTDLQYVVFHAA 254 (424)
Q Consensus 225 V~V~~---~DRpgLL~~i~~~L~~~gl~I~~A~ 254 (424)
|.|.+ ++.||++.++...|++.++++....
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 44543 5779999999999999999997665
No 343
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=24.57 E-value=1.9e+02 Score=22.88 Aligned_cols=49 Identities=10% Similarity=0.054 Sum_probs=35.2
Q ss_pred ceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCC
Q 014457 300 GLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDV 354 (424)
Q Consensus 300 ~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v 354 (424)
...+.+...| +....+.|.+.|+++...-.. .+... ..||+.|++|..+
T Consensus 62 ~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~-~~~~~-~~~~~~DPdG~~~ 110 (114)
T cd07247 62 GWLVYFAVDD----VDAAAARVEAAGGKVLVPPTD-IPGVG-RFAVFADPEGAVF 110 (114)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcc-cCCcE-EEEEEECCCCCEE
Confidence 4567777777 677778889999998865332 22222 5899999999875
No 344
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=24.39 E-value=1.4e+02 Score=23.15 Aligned_cols=46 Identities=11% Similarity=0.359 Sum_probs=33.1
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCC
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDV 354 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v 354 (424)
.+.+...| +....+.+.+.|+.+....-. ......||+.|++|..+
T Consensus 67 ~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 67 HIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred eEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 45556666 677888999999998764321 23445799999999865
No 345
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=23.62 E-value=8.8e+02 Score=25.57 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCch
Q 014457 234 KLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGL 313 (424)
Q Consensus 234 gLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DrpGL 313 (424)
..+.+++..+.++|+ |.+++.|.-|.. .+.+..++.+.|.+.+ +..|++.+.|..|+
T Consensus 154 ~~~~~~a~~l~~~Ga---------------d~I~i~Dt~G~l--~P~~v~~lv~alk~~~------~~pi~~H~Hnt~Gl 210 (448)
T PRK12331 154 DYFVKLAKEMQEMGA---------------DSICIKDMAGIL--TPYVAYELVKRIKEAV------TVPLEVHTHATSGI 210 (448)
T ss_pred HHHHHHHHHHHHcCC---------------CEEEEcCCCCCC--CHHHHHHHHHHHHHhc------CCeEEEEecCCCCc
Confidence 555555665655554 457777877753 3456666666665543 25699999999999
Q ss_pred HHHHHHHHHHCCceEEEEEEeecCCcee
Q 014457 314 LSDVTRAFRENGLSVSMAEIGTNGEKAT 341 (424)
Q Consensus 314 L~~Itr~l~e~gl~I~~A~i~T~g~~a~ 341 (424)
=-.-+-+=.+.|+.+..+.+.-.|+.+-
T Consensus 211 A~AN~laAieaGad~vD~sv~glg~gaG 238 (448)
T PRK12331 211 AEMTYLKAIEAGADIIDTAISPFAGGTS 238 (448)
T ss_pred HHHHHHHHHHcCCCEEEeeccccCCCcC
Confidence 7766666679999999999988876633
No 346
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=23.57 E-value=7.2e+02 Score=27.34 Aligned_cols=87 Identities=17% Similarity=0.127 Sum_probs=64.2
Q ss_pred CChhHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCC
Q 014457 231 DRPKLLFDTLCALTDLQYVVFHAAISSKGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNR 310 (424)
Q Consensus 231 DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~Dr 310 (424)
.-+..+.+++..+.++|+ +.++|.|.-|.. .+.+...+.+.|.+.+ +..|++.+.|.
T Consensus 151 ~t~e~~~~~ak~l~~~Ga---------------d~I~IkDtaG~l--~P~~v~~lv~alk~~~------~ipi~~H~Hnt 207 (596)
T PRK14042 151 HTLDNFLELGKKLAEMGC---------------DSIAIKDMAGLL--TPTVTVELYAGLKQAT------GLPVHLHSHST 207 (596)
T ss_pred CCHHHHHHHHHHHHHcCC---------------CEEEeCCcccCC--CHHHHHHHHHHHHhhc------CCEEEEEeCCC
Confidence 456677778888888775 346677777752 3456666666666543 35799999999
Q ss_pred CchHHHHHHHHHHCCceEEEEEEeecCCce
Q 014457 311 MGLLSDVTRAFRENGLSVSMAEIGTNGEKA 340 (424)
Q Consensus 311 pGLL~~Itr~l~e~gl~I~~A~i~T~g~~a 340 (424)
.|+=..-+-+-.+.|+.+..+-++..|+.+
T Consensus 208 ~Gla~an~laAieaGad~iD~ai~glGg~t 237 (596)
T PRK14042 208 SGLASICHYEAVLAGCNHIDTAISSFSGGA 237 (596)
T ss_pred CCcHHHHHHHHHHhCCCEEEeccccccCCC
Confidence 999766666667999999999999888774
No 347
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. This model describes tyrosine 3-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tryptophan 5-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.57 E-value=2.3e+02 Score=29.85 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=39.6
Q ss_pred EEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecC-Cc---eeeEEEEEeCCCCCCC-hHHHHHHHHH
Q 014457 302 RLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNG-EK---ATGSFYVMDASGHDVN-QRTVELLKQE 365 (424)
Q Consensus 302 ~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g-~~---a~d~Fyv~d~~g~~v~-~~~~~~lr~~ 365 (424)
.+.+...+ +|-|+++.++|.++++||++.+..... .. ..-.|+|.-. +..-+ .+.++.|++.
T Consensus 41 ~~~~~~~~-~g~L~~~l~~f~~~~inl~hiEsr~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~l~~~ 107 (457)
T TIGR01269 41 QFYIRTKE-ISSLHRILKYIETFKLNLVHFETRPTRTLSNADVDYSCLITLE-ANEINMSLLIESLRGN 107 (457)
T ss_pred EEEeccCc-chhHHHHHHHHHHcCCcEEEeecCCccccCCCCCceEEEEEEe-ccHhhHHHHHHHHHhh
Confidence 55666555 999999999999999999997765432 11 2335666432 33322 1355666654
No 348
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.01 E-value=3.1e+02 Score=19.76 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEEeC---CcchHHHHHHHHHHHcCce
Q 014457 82 TALEVTGV---DRPGLMSEISAVLYELGCH 108 (424)
Q Consensus 82 t~iev~~~---DRpGLLs~I~~vL~~~~~~ 108 (424)
..|.++|. ++||+++++..+|.+.++.
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~i~ 31 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDINVR 31 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCCeE
Confidence 35677776 7899999999999764333
No 349
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.94 E-value=7.3e+02 Score=24.02 Aligned_cols=69 Identities=19% Similarity=0.234 Sum_probs=52.2
Q ss_pred EEEEEeecCCCCCCCHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCce
Q 014457 264 QEYFIRQTDGCTLDTESQRQKLTQCLIAAIERRVSHGLRLEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKA 340 (424)
Q Consensus 264 d~F~V~~~~g~~~~~~~~~~~l~~~L~~al~rr~~~~~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a 340 (424)
|.+++.|..|.. .+.+...+.+.|.+.+ + ..|++.+.|..|+=..=+-+-.+.|+.+..+.+.-.|+++
T Consensus 164 ~~i~l~DT~G~~--~P~~v~~lv~~l~~~~----~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~a 232 (275)
T cd07937 164 DSICIKDMAGLL--TPYAAYELVKALKKEV----G--LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGT 232 (275)
T ss_pred CEEEEcCCCCCC--CHHHHHHHHHHHHHhC----C--CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCc
Confidence 457777888863 2456666666665443 2 5799999999999877777777899999999999888883
No 350
>PRK14645 hypothetical protein; Provisional
Probab=21.90 E-value=5.6e+02 Score=22.85 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457 313 LLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN 374 (424)
Q Consensus 313 LL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 374 (424)
+-..+..++.++|+.+...++...|..-.=..||...+|..++-..++++.+.|.. +|.+.
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~-~LD~~ 71 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEA-ELDRL 71 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHH-Hhccc
Confidence 45566788999999999999987776555466674345667776788999999888 45554
No 351
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.61 E-value=2.6e+02 Score=22.19 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=35.1
Q ss_pred CCcEEEEEEeCCcchHHHHHHHHHHHcCceEeeEEEEcCCceEEEEEEEecCCCCCCC
Q 014457 79 TENTALEVTGVDRPGLMSEISAVLYELGCHVPAAVAWTHKTRAACIFYIEDGLEGRPI 136 (424)
Q Consensus 79 ~~~t~iev~~~DRpGLLs~I~~vL~~~~~~I~~A~i~T~~~r~~dvf~V~d~~~g~~i 136 (424)
...+.+.+...|+..+ ..+...+..+|..+...-.....|+ .+++.|| +|+.+
T Consensus 58 ~~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DP-dGn~i 110 (114)
T cd07261 58 GGGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDP-DGHRL 110 (114)
T ss_pred CCceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECC-CCCEE
Confidence 3456677777886666 4455556679999876544444444 4789995 88754
No 352
>PRK02047 hypothetical protein; Provisional
Probab=21.17 E-value=4.4e+02 Score=21.23 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=45.4
Q ss_pred eEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEe----eCCeEEEEEEEeecCCCCCCCHHHHHHHHHHHHH
Q 014457 222 YSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISS----KGCFADQEYFIRQTDGCTLDTESQRQKLTQCLIA 291 (424)
Q Consensus 222 ~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T----~~~~a~d~F~V~~~~g~~~~~~~~~~~l~~~L~~ 291 (424)
.+.+.|.+++.+++...+..++..+...+..+.+.+ .|.|..-...|+ ..+++++..|-+.|.+
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~ 83 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTG 83 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhh
Confidence 468999999999999999999999877766666644 344554444442 3344677777776654
No 353
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=21.11 E-value=1.9e+02 Score=23.04 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=34.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCC
Q 014457 303 LEICTQNRMGLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDV 354 (424)
Q Consensus 303 lev~~~DrpGLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v 354 (424)
+-..+.+..-| ..+.+.|++.|+.+.... ........-.||+.|++|..+
T Consensus 77 i~~~~~~~~dl-~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~y~~Dp~G~~i 126 (128)
T PF00903_consen 77 IAFLAFDVDDL-DAAYERLKAQGVEIVEEP-DRYYFGSGYSFYFRDPDGNLI 126 (128)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTGEEEEEE-EEHSTTCEEEEEEEETTSEEE
T ss_pred EEEEeccHHHH-HHHHHHHhhcCccEEecC-CCCCCCCEEEEEEECCCCCEE
Confidence 45555555544 455688899999998754 344555666679999998754
No 354
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=20.94 E-value=2.4e+02 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=28.6
Q ss_pred eEEEEEeCCCCchHHHHHHHHHHCCceEEEEE
Q 014457 301 LRLEICTQNRMGLLSDVTRAFRENGLSVSMAE 332 (424)
Q Consensus 301 ~~lev~~~DrpGLL~~Itr~l~e~gl~I~~A~ 332 (424)
..|+|.-+|+||=|-.+.+=|.+.|.||...-
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIi 37 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITII 37 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEE
Confidence 46889999999999999999999999997743
No 355
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.94 E-value=2.1e+02 Score=22.75 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=35.2
Q ss_pred CeEEEEEEecCChhHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEeecCCCCC
Q 014457 221 GYSVVNIKCIDRPKLLFDTLCALTDLQYVVFHAAISSKGC-FADQEYFIRQTDGCTL 276 (424)
Q Consensus 221 ~~tvV~V~~~DRpgLL~~i~~~L~~~gl~I~~A~I~T~~~-~a~d~F~V~~~~g~~~ 276 (424)
+...+.+.+.+. +..+...|...|+.+...-....+. .....||++|++|..+
T Consensus 67 ~~~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 67 GSDDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred CCceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 334555566554 7888999999999987655433221 1124588999999864
No 356
>PRK14636 hypothetical protein; Provisional
Probab=20.68 E-value=5.2e+02 Score=23.62 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHCCceEEEEEEeecCCceeeEEEEEeCCCCCCChHHHHHHHHHHHhhhhhhc
Q 014457 312 GLLSDVTRAFRENGLSVSMAEIGTNGEKATGSFYVMDASGHDVNQRTVELLKQEIGGSVLVVN 374 (424)
Q Consensus 312 GLL~~Itr~l~e~gl~I~~A~i~T~g~~a~d~Fyv~d~~g~~v~~~~~~~lr~~l~~~~~~~~ 374 (424)
-+-.-+..++.++|+.+...++...+....=..||....|..++-..++.+.++|... |.+.
T Consensus 6 ~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~-LD~~ 67 (176)
T PRK14636 6 ALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDV-FDEL 67 (176)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHH-hccC
Confidence 3455677889999999999999877766555667754444567767889999998884 4543
Done!