Query 014458
Match_columns 424
No_of_seqs 266 out of 1815
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:56:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 3.4E-49 1.2E-53 394.9 22.2 305 36-407 7-357 (396)
2 2qfz_A TBC1 domain family memb 100.0 6.2E-49 2.1E-53 387.3 23.1 267 33-408 22-312 (345)
3 2qq8_A TBC1 domain family memb 100.0 7.9E-47 2.7E-51 370.2 19.9 281 30-418 14-299 (334)
4 3qye_A TBC1 domain family memb 100.0 7E-47 2.4E-51 370.7 12.3 253 34-407 27-287 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 100.0 2.6E-45 8.9E-50 356.3 15.6 240 37-406 5-251 (310)
6 4hl4_A TBC1 domain family memb 100.0 2.4E-43 8.1E-48 339.5 17.7 254 34-419 17-277 (292)
7 3qwl_A TBC1 domain family memb 100.0 1.3E-38 4.4E-43 304.3 9.9 231 39-409 28-268 (294)
8 2js3_A Uncharacterized protein 17.3 39 0.0013 24.4 0.8 11 214-224 17-27 (96)
9 4g26_A Pentatricopeptide repea 15.8 6.3E+02 0.022 24.6 9.7 68 262-329 107-178 (501)
10 4g26_A Pentatricopeptide repea 12.8 2.7E+02 0.0094 27.4 6.0 86 232-325 120-209 (501)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=100.00 E-value=3.4e-49 Score=394.88 Aligned_cols=305 Identities=22% Similarity=0.348 Sum_probs=230.9
Q ss_pred cHHHHHHhcCCCCCccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccC
Q 014458 36 SARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVG 115 (424)
Q Consensus 36 ~~~~W~~~~~~~~~i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~ 115 (424)
..++|.+++.+.+.+|..+ +|.++++|||+.+|+.||++|||++|.+. ++|+..++++++.|.++++++..-.
T Consensus 7 R~~kw~~lL~~~~~~d~~~-Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~---- 79 (396)
T 1fkm_A 7 RISKFDNILKDKTIINQQD-LRQISWNGIPKIHRPVVWKLLIGYLPVNT--KRQEGFLQRKRKEYRDSLKHTFSDQ---- 79 (396)
T ss_dssp HHHHHHHHHSSCSBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTCSCSBG--GGHHHHHHHHHHHHHHHHHHTSSSS----
T ss_pred HHHHHHHHHcCCCCCCHHH-HHHHHHcCCCHHHHHHHHHHHHCCCCCCh--hHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 4578999998866589888 66677899999999999999999999876 4678888999999999998753100
Q ss_pred CCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccChhh
Q 014458 116 SGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQEN 195 (424)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~ 195 (424)
. ....+..+||++||.||+|++++|+.+.+
T Consensus 80 --------------------------------------------~------~~~~~~~~qI~~Dv~RT~p~~~~F~~~~~ 109 (396)
T 1fkm_A 80 --------------------------------------------H------SRDIPTWHQIEIDIPRTNPHIPLYQFKSV 109 (396)
T ss_dssp --------------------------------------------C------STHHHHHHHHHHHGGGSSTTSGGGGSHHH
T ss_pred --------------------------------------------C------cccHHHHHHHHHHhhhhCCCcccccCchH
Confidence 0 00123678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhcc------------------C----------hhHHHHHHHHHHHHh
Q 014458 196 LSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------N----------EADAFWCFERLMRRL 247 (424)
Q Consensus 196 ~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~------------------~----------E~~af~~~~~l~~~~ 247 (424)
++.|.|||.+|+.+||++|||||||+|+|+|++++. + |++|||||++||+++
T Consensus 110 ~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~ 189 (396)
T 1fkm_A 110 QNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQI 189 (396)
T ss_dssp HHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998752 1 999999999999999
Q ss_pred hccccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHH
Q 014458 248 RGNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLF 327 (424)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~ 327 (424)
.++|.. +..|+...+..+..+|+..||+||+||++.|+++.+|+++||+|+|+++||++.++||||.+|++|..-...
T Consensus 190 ~~~f~~--~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~ 267 (396)
T 1fkm_A 190 TDNYIH--GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTS 267 (396)
T ss_dssp GGGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhh--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccc
Confidence 888865 356999999999999999999999999999999999999999999999999999999999999987211000
Q ss_pred HHHHHHHhhhccccccCcchh-H-HhhhhC----hhhhhhhcCCCCCC---C---------CCCchhhHHHHHHHHHHHH
Q 014458 328 YLYEEAESAASTKSEGSKAKA-K-SIRQCG----KYERENMKNGAKTS---E---------APLPISVFLVASVLKDKSS 389 (424)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~---~---------~~~~~~~~~~~ail~~~r~ 389 (424)
..+.... ..+..... + ....++ .+........+..+ + +..++++|+|+|||...|+
T Consensus 268 ~~~~~~~------~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~ 341 (396)
T 1fkm_A 268 SYSMSSN------DIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSD 341 (396)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHHHTHH
T ss_pred hhhhhcc------cccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHHHHHH
Confidence 0000000 00000000 0 000000 00000000000000 0 1147999999999999999
Q ss_pred HHHHHhcCchhHHHHHhh
Q 014458 390 KLLQEARGLDDVVKVSLI 407 (424)
Q Consensus 390 ~il~~~~~~dd~~~~~~~ 407 (424)
+||+ .++++++++|.+
T Consensus 342 ~Ll~--~df~~~l~~L~~ 357 (396)
T 1fkm_A 342 QLME--MDFQETITFLQN 357 (396)
T ss_dssp HHTT--CCHHHHHHHHTS
T ss_pred HHHh--cCHHHHHHHHhc
Confidence 9995 589999999844
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=100.00 E-value=6.2e-49 Score=387.31 Aligned_cols=267 Identities=22% Similarity=0.383 Sum_probs=227.8
Q ss_pred CCCcHHHHHHhcCCCCCccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 014458 33 KTLSARKWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFP 112 (424)
Q Consensus 33 ~~l~~~~W~~~~~~~~~i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~ 112 (424)
..-..++|.++++. ..+|..+ ++.++++|||+.+|+.||++|||++|.+. ++|+...+++++.|.++++++.....
T Consensus 22 e~~r~~kw~~~l~~-~~~d~~~-Lr~l~~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~ 97 (345)
T 2qfz_A 22 EASRLDKFKQLLAG-PNTDLEE-LRRLSWSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRN 97 (345)
T ss_dssp --CHHHHHHHHHHC-SBCCHHH-HHHHHTTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-----
T ss_pred hHHHHHHHHHHHcC-CCCCHHH-HHHHHHCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 34566899999976 3478888 56667899999999999999999998865 57788888999999999987642100
Q ss_pred ccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccC
Q 014458 113 VVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEK 192 (424)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~ 192 (424)
. ....+..+||++||.||+|+ ++|++
T Consensus 98 ~-----------------------------------------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~ 123 (345)
T 2qfz_A 98 D-----------------------------------------------------EVHQDTYRQIHIDIPRMSPE-ALILQ 123 (345)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHGGGCSCH-HHHTS
T ss_pred c-----------------------------------------------------cchHHHHHHHHHhCcccCCc-cccCC
Confidence 0 00113678999999999999 99999
Q ss_pred hhhHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhcc------------------------ChhHHHHHHHHHHHHhh
Q 014458 193 QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLE------------------------NEADAFWCFERLMRRLR 248 (424)
Q Consensus 193 ~~~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~------------------------~E~~af~~~~~l~~~~~ 248 (424)
+.+++.|.|||.+|+.+||++|||||||+|+|+|++++. +|++|||||+++|+++.
T Consensus 124 ~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~ 203 (345)
T 2qfz_A 124 PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQ 203 (345)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSG
T ss_pred chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999998874 39999999999999998
Q ss_pred ccccCCCChhhHHHHHHHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHH
Q 014458 249 GNFRCTESSVGVETQLSNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFY 328 (424)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~ 328 (424)
++|.. +..|+...+..+..+|+..+|+||+||++.|+++.+|+++||+|+|+++||+++++||||.+|++|..
T Consensus 204 ~~y~~--~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~~----- 276 (345)
T 2qfz_A 204 DNYTF--AQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDG----- 276 (345)
T ss_dssp GGSST--TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTTT-----
T ss_pred ccccc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCCC-----
Confidence 77764 35699999999999999999999999999999999999999999999999999999999999997531
Q ss_pred HHHHHHhhhccccccCcchhHHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHhhh
Q 014458 329 LYEEAESAASTKSEGSKAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLIS 408 (424)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~~~ 408 (424)
-..+.+|+|+|+|...|++||++ .+++++++++.+.
T Consensus 277 -------------------------------------------~~~~~~~v~~AiL~~~~~~ll~~-~d~~~il~~L~~~ 312 (345)
T 2qfz_A 277 -------------------------------------------FSHFHLYVCAAFLVRWRKEILEE-KDFQELLLFLQNL 312 (345)
T ss_dssp -------------------------------------------TTTHHHHHHHHHHHHTHHHHHHC-CCHHHHHHHHTSC
T ss_pred -------------------------------------------hhHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHcC
Confidence 12378999999999999999965 5999999998443
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.9e-47 Score=370.25 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=215.9
Q ss_pred CCCCCCcHHHHH-HhcCCCCC-ccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 014458 30 KPGKTLSARKWQ-AAFTPEGQ-LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEEC 107 (424)
Q Consensus 30 ~~~~~l~~~~W~-~~~~~~~~-i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~ 107 (424)
+....-...+|. .++.+.+. .+..+ ++.++++|||+++|+.||++|+|+. ...+.+.++...++.++.|..+....
T Consensus 14 ~~~~~~~~~~W~~~il~~w~~~~~~~~-lr~l~~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~ 91 (334)
T 2qq8_A 14 LYFQGNAVLTWNNEILPNWETMWCSRK-VRDLWWQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGG 91 (334)
T ss_dssp -CCSSCHHHHHHHTTGGGCC--CCCHH-HHHHHHTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHhccChHH-HHHHHHCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhcccc
Confidence 334444567898 47655333 46666 7778899999999999999999985 34566666666666666666553321
Q ss_pred hhhccccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCc
Q 014458 108 HQIFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTL 187 (424)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~ 187 (424)
.... .+..+ . ......+..+||++||.||+|++
T Consensus 92 ~~~~---------------~~d~~----~----------------------------~~~~~~~~~~~I~~Dv~RT~p~~ 124 (334)
T 2qq8_A 92 SEVE---------------NEDAG----F----------------------------SAADREASLELIKLDISRTFPNL 124 (334)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHHHTSSGGG
T ss_pred ccCc---------------ccccc----c----------------------------ccccchhHHHHHHHHHhhcCCCc
Confidence 1000 00000 0 00000125689999999999999
Q ss_pred ccccCh-hhHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhccChhHHHHHHHHHHHHhh--ccccCCCChhhHHHHH
Q 014458 188 VFYEKQ-ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLR--GNFRCTESSVGVETQL 264 (424)
Q Consensus 188 ~~f~~~-~~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~~E~~af~~~~~l~~~~~--~~~~~~~~~~~~~~~~ 264 (424)
++|+.+ .+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++.. .+|.. +..++...+
T Consensus 125 ~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~--~~~~~~~~~ 201 (334)
T 2qq8_A 125 CIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRV--DHGLMLTYF 201 (334)
T ss_dssp CSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSS--CCHHHHHHH
T ss_pred hhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCC--ChHHHHHHH
Confidence 999875 6899999999999999999999999999999999887 89999999999998753 34433 356889999
Q ss_pred HHHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHHHHHHHHhhhccccccC
Q 014458 265 SNLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGS 344 (424)
Q Consensus 265 ~~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~ 344 (424)
..+..+++..+|+||+||.+.|+++.+|+++||+|+|++++|++.++||||.+|++|
T Consensus 202 ~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg----------------------- 258 (334)
T 2qq8_A 202 AAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG----------------------- 258 (334)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC-----------------------
Confidence 999999999999999999999999999999999999999999999999999999974
Q ss_pred cchhHHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhcccccccccc
Q 014458 345 KAKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQ 418 (424)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~~~~~~~~~~~~~ 418 (424)
..+.+++|+|||...|++|++. +++++++++ +.++..+|++
T Consensus 259 ----------------------------~~~l~~valaiL~~~~~~Ll~~--d~~~il~~L---~~lp~~~d~~ 299 (334)
T 2qq8_A 259 ----------------------------EEFLFRTALGILKLFEDILTKM--DFIHMAQFL---TRLPEDLPAE 299 (334)
T ss_dssp ----------------------------HHHHHHHHHHHHHHTHHHHHTC--CHHHHHHHH---HSCCTTCCHH
T ss_pred ----------------------------CHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHH---HhCCCcCCHH
Confidence 2378999999999999999954 789999887 4444445544
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=100.00 E-value=7e-47 Score=370.68 Aligned_cols=253 Identities=23% Similarity=0.413 Sum_probs=209.0
Q ss_pred CCcHHHHHHhcCCCCC----ccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q 014458 34 TLSARKWQAAFTPEGQ----LDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQ 109 (424)
Q Consensus 34 ~l~~~~W~~~~~~~~~----i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~ 109 (424)
..+.++|.+++++.|+ .+..+ ++.++++|||+.+|+.||++|+|+.+...+..+ .....+..|.+++++..
T Consensus 27 ~e~~~~W~~~l~~~~~~~~~~~~~~-l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~---~~~~~~~~Y~~l~~~~~- 101 (331)
T 3qye_A 27 KEVTTVWEKMLSTPGRSKIKFDMEK-MHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPS---KQQPKDVPYKELLKQLT- 101 (331)
T ss_dssp HHHHHHHHHHHTCTTGGGCCCCHHH-HHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCS---SSCCCCCCHHHHTTSCC-
T ss_pred HHHHHHHHHHhccCCCCcccCCHHH-HHHHHHcCCCHHHHHHHHHHHhCcchhhhcchh---hhhhchHHHHHHHHhcC-
Confidence 3366889999988765 36666 666778999999999999999997431110000 00112234555543210
Q ss_pred hccccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCccc
Q 014458 110 IFPVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVF 189 (424)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~ 189 (424)
...++|++||.||+|++++
T Consensus 102 -------------------------------------------------------------~~~~~I~~Dv~Rt~~~~~~ 120 (331)
T 3qye_A 102 -------------------------------------------------------------SQQHAILIDLGRTFPTHPY 120 (331)
T ss_dssp -------------------------------------------------------------TTHHHHHHHHTTSSTTSTT
T ss_pred -------------------------------------------------------------CchhHHHHhhcccCCCchh
Confidence 1246899999999999999
Q ss_pred ccCh--hhHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhccChhHHHHHHHHHHHHh--hccccCCCChhhHHHHHH
Q 014458 190 YEKQ--ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRL--RGNFRCTESSVGVETQLS 265 (424)
Q Consensus 190 f~~~--~~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~~E~~af~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 265 (424)
|..+ .+++.|.|||.+|+.+||++|||||||+|+|+|++++ +|++|||||+++|+.. +.+|.. +..++...+.
T Consensus 121 f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~--~~~~~~~~~~ 197 (331)
T 3qye_A 121 FSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRP--DMIILQIQMY 197 (331)
T ss_dssp TCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGST--TCHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCC--ChHHHHHHHH
Confidence 9986 7899999999999999999999999999999999888 8999999999999874 555543 5679999999
Q ss_pred HHHHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHHHHHHHHhhhccccccCc
Q 014458 266 NLASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSK 345 (424)
Q Consensus 266 ~~~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~ 345 (424)
.+..+++..+|+||+||.+.|+.+.+|+++||+|+|++++|++.++||||.+|++|.
T Consensus 198 ~l~~ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~----------------------- 254 (331)
T 3qye_A 198 QLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGT----------------------- 254 (331)
T ss_dssp HHHHHHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999743
Q ss_pred chhHHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHhh
Q 014458 346 AKAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLI 407 (424)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~~ 407 (424)
++.+++|+|||...|+.||++ .+++++++++.+
T Consensus 255 ----------------------------~~l~~valaiL~~~~~~ll~~-~~~~~il~~l~~ 287 (331)
T 3qye_A 255 ----------------------------EVIFKVALSLLGSHKPLILQH-ENLETIVDFIKS 287 (331)
T ss_dssp ----------------------------THHHHHHHHHHHHTHHHHHTC-CSHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHh
Confidence 388999999999999999965 389999998854
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-45 Score=356.28 Aligned_cols=240 Identities=24% Similarity=0.416 Sum_probs=203.3
Q ss_pred HHHHHHhcCCCCC-c--cHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 014458 37 ARKWQAAFTPEGQ-L--DIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPV 113 (424)
Q Consensus 37 ~~~W~~~~~~~~~-i--~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~ 113 (424)
.++|.+++++.+. . +..+ ++.++++|||+.+|+.||+.|+|+.+. ...++.|..++++..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~-l~~l~~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKG-LSTLVKSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTT-HHHHHHHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHH-HHHHHHCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 4678888765322 2 3344 677778999999999999999998653 123356777643210
Q ss_pred cCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccCh
Q 014458 114 VGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQ 193 (424)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~ 193 (424)
...++|++||.||+|++++|..+
T Consensus 68 ---------------------------------------------------------~~~~~I~~Dv~Rt~p~~~~f~~~ 90 (310)
T 3hzj_A 68 ---------------------------------------------------------AQESVITRDIHRTFPAHDYFKDT 90 (310)
T ss_dssp ---------------------------------------------------------TTHHHHHHHHTTSSTTSTTTSST
T ss_pred ---------------------------------------------------------CcHHHHHHHHHhhCCCchhhcCC
Confidence 02468999999999999999876
Q ss_pred --hhHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhccChhHHHHHHHHHHHH--hhccccCCCChhhHHHHHHHHHH
Q 014458 194 --ENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRR--LRGNFRCTESSVGVETQLSNLAS 269 (424)
Q Consensus 194 --~~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~~E~~af~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~ 269 (424)
.+++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|++ ++.+|. ++++++...+..+..
T Consensus 91 ~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~ 167 (310)
T 3hzj_A 91 GGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYR--NNFEDLHCKFYQLER 167 (310)
T ss_dssp TSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTH--HHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhccccccccc--ccHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998 899999999999987 455553 356788999999999
Q ss_pred HHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHHHHHHHHhhhccccccCcchhH
Q 014458 270 ITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKAK 349 (424)
Q Consensus 270 ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (424)
+++..+|+||+||.+.|+++.+|+++||+|+|++++|++.++||||.++++|
T Consensus 168 ll~~~~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g---------------------------- 219 (310)
T 3hzj_A 168 LMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEG---------------------------- 219 (310)
T ss_dssp HHHHHCHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHC----------------------------
T ss_pred HHHHhChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----------------------------
Confidence 9999999999999999999999999999999999999999999999999974
Q ss_pred HhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHh
Q 014458 350 SIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSL 406 (424)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~ 406 (424)
.++..++|+||+...|++||++ ++++++++|.
T Consensus 220 -----------------------~~~l~~v~lail~~~~~~Ll~~--d~~~~l~~l~ 251 (310)
T 3hzj_A 220 -----------------------LNIIFHVALALLKTSKEDLLQA--DFEGALKFFR 251 (310)
T ss_dssp -----------------------TTHHHHHHHHHHHHTHHHHHTC--CHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 3478999999999999999964 8999999884
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=100.00 E-value=2.4e-43 Score=339.48 Aligned_cols=254 Identities=19% Similarity=0.240 Sum_probs=203.2
Q ss_pred CCcHHHHHHhcCCCCCccHHHHHHHHhhC-C-CCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 014458 34 TLSARKWQAAFTPEGQLDIGKTLSRIHRG-G-IHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIF 111 (424)
Q Consensus 34 ~l~~~~W~~~~~~~~~i~~~kll~~~~~~-G-Ip~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~ 111 (424)
+...+++++++.+ +.+|..++++.+..+ | +|+++|+.||+.|+|+.+...+.. |....
T Consensus 17 ~~k~~~i~~~l~~-~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~~------------~~~~~------- 76 (292)
T 4hl4_A 17 KKKVAEIHQALNS-DPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI------------SGKNL------- 76 (292)
T ss_dssp HHHHHHHHHHHTS-SSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCSC------------CCTTH-------
T ss_pred HHHHHHHHHHHcC-CcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCCc------------hhhhh-------
Confidence 3445678888754 668999955555433 4 789999999999999977654211 11000
Q ss_pred cccCCCcccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCccccc
Q 014458 112 PVVGSGKFITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYE 191 (424)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~ 191 (424)
....+..+||++||.||++.++.|.
T Consensus 77 -------------------------------------------------------~~~~~~~~qI~~Dv~RT~~~~~~~~ 101 (292)
T 4hl4_A 77 -------------------------------------------------------RQMSKDYQQVLLDVRRSLRRFPPGM 101 (292)
T ss_dssp -------------------------------------------------------HHHCTTHHHHHHHHHTTGGGSCTTS
T ss_pred -------------------------------------------------------cccchhHHHHHHhhhhhhhhccCCC
Confidence 0011246899999999999999875
Q ss_pred C----hhhHHHHHHHHHHHHhhCCCCCCCCChhHHHHHHHhhccChhHHHHHHHHHHHHhhccccCCCChhhHHHHHHHH
Q 014458 192 K----QENLSKLWDILAVYAWVDRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNL 267 (424)
Q Consensus 192 ~----~~~~~~L~rIL~~~~~~~p~~gY~QGm~~i~a~ll~~~~~E~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 267 (424)
. +..++.|.|||.+|+.+||++|||||||+|||+|++++ +|++|||||+++|+...+.|+ .+++.++...+..+
T Consensus 102 ~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l~~~~-~~~~~~~~~~~~~l 179 (292)
T 4hl4_A 102 PEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHLRDFM-DPTMDNTKHILNYL 179 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTTTGGG-CSSSCTTTGGGGGH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHH
Confidence 4 35688999999999999999999999999999999887 899999999999997555554 34556888899999
Q ss_pred HHHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCC-hhhHHHHHHHHHhccCCchHHHHHHHHHhhhccccccCcc
Q 014458 268 ASITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFS-FCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKA 346 (424)
Q Consensus 268 ~~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~-~~~v~riWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (424)
..+|+..||+||+||++.++. .+|+++||+|+|++++| ++.++||||.++++|
T Consensus 180 ~~ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g------------------------- 233 (292)
T 4hl4_A 180 MPIIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACH------------------------- 233 (292)
T ss_dssp HHHHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSC-------------------------
T ss_pred HHHHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcC-------------------------
Confidence 999999999999999999995 69999999999999995 999999999999964
Q ss_pred hhHHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhccccccccccc
Q 014458 347 KAKSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISHQLTYLINVQS 419 (424)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~~~~~~~~~~~~~s 419 (424)
..+.+|+|+||+...|++||++..++++++.++ +.++..+|++.
T Consensus 234 --------------------------~~~~~~v~~ail~~~~~~Ll~~~~d~~~l~~~l---~~lp~~~d~~~ 277 (292)
T 4hl4_A 234 --------------------------PLMPIYFAAVIVLYREQEVLDCDCDMASVHHLL---SQIPQDLPYET 277 (292)
T ss_dssp --------------------------TTHHHHHHHHHHHHTHHHHHTSCCSTTHHHHHH---HSCCSSCCHHH
T ss_pred --------------------------CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH---HhCCCCCCHHH
Confidence 338899999999999999998777888888777 44444455543
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=304.34 Aligned_cols=231 Identities=16% Similarity=0.210 Sum_probs=184.0
Q ss_pred HHHHhcCCCCCccHHHHHHHHhhCCCCCCchhhhhhhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCc
Q 014458 39 KWQAAFTPEGQLDIGKTLSRIHRGGIHPSIRGEVWEFLLGCYEPKSTFDEREEIRQRRRLQYSAWKEECHQIFPVVGSGK 118 (424)
Q Consensus 39 ~W~~~~~~~~~i~~~kll~~~~~~GIp~~~R~~vW~~LLg~~p~~~~~~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~~ 118 (424)
..+.++ ++..+|..++++.+++||||+.+|+.||++|+|++|.++ +.|+.++++++++|++++++..
T Consensus 28 ~~~~ll-~~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~--~~~~~~l~~kr~eY~~l~~~~~---------- 94 (294)
T 3qwl_A 28 SLEILL-KDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHH--ESHAKVMMYRKEQYLDVLHALK---------- 94 (294)
T ss_dssp HHHHHT-TSSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHh-cCCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCc--hhHHHHHHHHHHHHHHHHHhhh----------
Confidence 456665 447889999666766666999999999999999999987 5688999999999999988743
Q ss_pred ccccccccCCCCCCCCcccccccCCCCCCcchhHHHhhhcCCCchhHHHHHHHHHHHHhhhcCCCCCCcccccChhhHHH
Q 014458 119 FITAPVVTEDGQPIQDPLVLQETNSGISASSSKMVKELLSHGPLDKKVIQWMLTLHQIGLDVIRTDRTLVFYEKQENLSK 198 (424)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~f~~~~~~~~ 198 (424)
+.++|..++++ +..|
T Consensus 95 -----------------------------------------------------~~r~I~~~tP~----~~vf-------- 109 (294)
T 3qwl_A 95 -----------------------------------------------------VVRFVSDATPQ----AEVY-------- 109 (294)
T ss_dssp -----------------------------------------------------HTTSCCTTSCH----HHHH--------
T ss_pred -----------------------------------------------------hhhhhhccCch----HHHH--------
Confidence 22344442221 1111
Q ss_pred HHHHHHHHHhh----------CCCCCCCCChhHHHHHHHhhccChhHHHHHHHHHHHHhhccccCCCChhhHHHHHHHHH
Q 014458 199 LWDILAVYAWV----------DRDVGYCQGMSDLCSPMIILLENEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLA 268 (424)
Q Consensus 199 L~rIL~~~~~~----------~p~~gY~QGm~~i~a~ll~~~~~E~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (424)
+..|... +++. ++|||..|+++++.++.+|++|||||++||+++.++|.. +.+|++.. ++
T Consensus 110 ----l~~~~~~~~~l~~~~~~~~~~-~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l~~~f~~--~~~gl~~~---l~ 179 (294)
T 3qwl_A 110 ----LRMYQLESGKLPRSPSFPLEP-DDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLNTKYRD--SLPQLPKA---FE 179 (294)
T ss_dssp ----HHHHHHHHTCCCSSTTSCCCH-HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTTTTT--TGGGHHHH---HH
T ss_pred ----HHHHHcccccccccccCCccc-chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhCC--ChhHHHHH---HH
Confidence 1222111 2222 459999999999999999999999999999998877765 35687665 48
Q ss_pred HHHHhhCHHHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHHHHHHHHhhhccccccCcchh
Q 014458 269 SITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYLYEEAESAASTKSEGSKAKA 348 (424)
Q Consensus 269 ~ll~~~dp~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (424)
.+|+..||+|++||++.|+.+.+++.+||+|+|++++|+++++||||.+|++
T Consensus 180 ~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~---------------------------- 231 (294)
T 3qwl_A 180 QYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSG---------------------------- 231 (294)
T ss_dssp HHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTT----------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhC----------------------------
Confidence 9999999999999999999887777799999999999999999999999984
Q ss_pred HHhhhhChhhhhhhcCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCchhHHHHHhhhc
Q 014458 349 KSIRQCGKYERENMKNGAKTSEAPLPISVFLVASVLKDKSSKLLQEARGLDDVVKVSLISH 409 (424)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ail~~~r~~il~~~~~~dd~~~~~~~~~ 409 (424)
+.++++++|+|||...|++||+.. ..+++++++.+..
T Consensus 232 -----------------------~~~~l~~valAiL~~~r~~Ll~~~-~~~~il~~Lq~lp 268 (294)
T 3qwl_A 232 -----------------------SCKILVFVAVEILLTFKIKVMALN-SAEKITKFLENIP 268 (294)
T ss_dssp -----------------------CSTHHHHHHHHHHHHTHHHHHHCC-SHHHHHHHHTTCC
T ss_pred -----------------------CchHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCC
Confidence 445889999999999999999652 4489999885443
No 8
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=17.34 E-value=39 Score=24.41 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=9.0
Q ss_pred CCCCChhHHHH
Q 014458 214 GYCQGMSDLCS 224 (424)
Q Consensus 214 gY~QGm~~i~a 224 (424)
-|+|||.++++
T Consensus 17 lyfqgM~~~a~ 27 (96)
T 2js3_A 17 LYFQGMTDTAA 27 (96)
T ss_dssp BTTBSTTTHHH
T ss_pred eeeccccccCH
Confidence 39999998765
No 9
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=15.83 E-value=6.3e+02 Score=24.64 Aligned_cols=68 Identities=16% Similarity=0.044 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhCH----HHHHHHHhCCCCCcchhHHHHHHhcCcCCChhhHHHHHHHHHhccCCchHHHH
Q 014458 262 TQLSNLASITQVIDP----KLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPHLFYL 329 (424)
Q Consensus 262 ~~~~~~~~ll~~~dp----~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~~~v~riWD~~l~~g~~~~~~~~ 329 (424)
.+-.++..+.+.-++ ++++.+.+.|+.|...++.-++..+++.=..+.+.++|+.+...|..+.....
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty 178 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL 178 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH
Confidence 344444555555444 46777788888888888888888888888888899999988887765544433
No 10
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=12.85 E-value=2.7e+02 Score=27.36 Aligned_cols=86 Identities=8% Similarity=-0.055 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHHHhhccccCCCChhhHHHHHHHHHHHHHhhCH----HHHHHHHhCCCCCcchhHHHHHHhcCcCCCh
Q 014458 232 NEADAFWCFERLMRRLRGNFRCTESSVGVETQLSNLASITQVIDP----KLHQHLETLGGGDYLFAFRMLMVLFRREFSF 307 (424)
Q Consensus 232 ~E~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~dp----~L~~hl~~~~i~~~~f~~~W~ltlF~~~l~~ 307 (424)
+-.+|+-+|..+... ... + ....+-.++..+.+.-+. ++++.+.+.|+.|...++.-++..+++.=..
T Consensus 120 ~~~~A~~l~~~M~~~---g~~--P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 120 DPEMAFDMVKQMKAF---GIQ--P---RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp CHHHHHHHHHHHHHT---TCC--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHc---CCC--C---ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 345677777665532 121 2 334444455555554444 5788899999999999999999999999999
Q ss_pred hhHHHHHHHHHhccCCch
Q 014458 308 CDSLYLWEMMWALEYDPH 325 (424)
Q Consensus 308 ~~v~riWD~~l~~g~~~~ 325 (424)
+.+.++++.+-..|..+.
T Consensus 192 d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHHHHHHhCCCcC
Confidence 999999999988776553
Done!