BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014459
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
           Citri
 pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
           Citri
          Length = 313

 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 21/115 (18%)

Query: 122 LLFLQGGPGFECRGPTESSGWINKACEEFRVVLMDQRGTGLSTPLSVSSMLQMKSAKDLV 181
           ++ L GGPG  C               ++R+VL DQRG+G STP +           DLV
Sbjct: 37  VVMLHGGPGGGCNDKMRRF----HDPAKYRIVLFDQRGSGRSTPHA-----------DLV 81

Query: 182 DYLKHFRADSIVNDAEFIRVRLDPDAKPWTVLGQSYGGFCAVTYLSFAPQGLKQV 236
           D         +V D E +R  L  D   W V G S+G   A+ Y    PQ + ++
Sbjct: 82  DNTTW----DLVADIERLRTHLGVDR--WQVFGGSWGSTLALAYAQTHPQQVTEL 130


>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
           From Serratia Marcescens
 pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
           Pro-tboda
 pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
           With Sar-Tboda
 pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
           With Ala-Tboda
          Length = 317

 Score = 33.9 bits (76), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 123 LFLQGGPGFECRGPTESSGWINKACEEFRVVLMDQRGTGLSTPLSVSSMLQMKSAKDLVD 182
           +F+ GGPG    G            E ++V+L DQRG G S P    + L   +   LV 
Sbjct: 41  VFIHGGPG----GGISPHHRQLFDPERYKVLLFDQRGCGRSRP---HASLDNNTTWHLV- 92

Query: 183 YLKHFRADSIVNDAEFIRVRLDPDAKPWTVLGQSYGGFCAVTYLSFAPQGLKQV 236
                        A+  R+R     + W V G S+G   A+ Y    P+ + ++
Sbjct: 93  -------------ADIERLREMAGVEQWLVFGGSWGSTLALAYAQTHPERVSEM 133


>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
           Protein Ttha1809 From Thermus Thermophilus Hb8
 pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
           Protein Ttha1809 From Thermus Thermophilus Hb8
          Length = 286

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 19/112 (16%)

Query: 120 PYLLFLQGGPGFECRGPTESSGWINKACEEFRVVLMDQRGTGLSTPLSVSSMLQMKSAKD 179
           P L  L GGPG       E    +    E FRVV  DQRG+G S  L     L       
Sbjct: 26  PALFVLHGGPGGNAYVLREG---LQDYLEGFRVVYFDQRGSGRSLELPQDPRL------- 75

Query: 180 LVDYLKHFRADSIVNDAEFIRVRLDPDAKPWTVLGQSYGGFCAVTYLSFAPQ 231
                  F  D++V D   +   L    + + +L   +G   A+  L   PQ
Sbjct: 76  -------FTVDALVEDTLLLAEAL--GVERFGLLAHGFGAVVALEVLRRFPQ 118


>pdb|4FZ4|A Chain A, Crystal Structure Of Hp0197-18kd
          Length = 154

 Score = 32.0 bits (71), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 26/60 (43%)

Query: 248 GCSADSVYRVAFEQVIRQNEKYYKRFPQDVEIVREIVKHLAESEGGGVLLPSGGILTPRV 307
           G   D  Y++  E  IRQ  +  K++P D  I  E   HL + EG  +    G  L   V
Sbjct: 71  GDLNDFKYQIKVENYIRQVAELRKKYPGDNTIEEEYNAHLKQDEGKSIASQEGATLRDYV 130


>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
           Of Human Cyclophilin G In Complex With Cyclosporin A
          Length = 179

 Score = 31.6 bits (70), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 145 KACEEFRVVLMDQRGTGLST--PLSVSSMLQMKSAKDLV 181
           K CE FR +   ++GTG ST  PL   S L  +  KD +
Sbjct: 37  KTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFM 75


>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
           Of Human Cyclophilin G
          Length = 179

 Score = 31.6 bits (70), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 145 KACEEFRVVLMDQRGTGLST--PLSVSSMLQMKSAKDLV 181
           K CE FR +   ++GTG ST  PL   S L  +  KD +
Sbjct: 37  KTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFM 75


>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
           Of Human Cyclophilin G
          Length = 198

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 145 KACEEFRVVLMDQRGTGLST--PLSVSSMLQMKSAKDLV 181
           K CE FR +   ++GTG ST  PL   S L  +  KD +
Sbjct: 54  KTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFM 92


>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor
          Length = 398

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 67  EHVAGKWYSVPDLRLRDHRFTVPLD 91
           E+VA +WY  P+L L  H +T  +D
Sbjct: 221 EYVATRWYRAPELMLSLHEYTQAID 245


>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex
           With An Mkk5 Binding Fragment
 pdb|4IC7|D Chain D, Crystal Structure Of The Erk5 Kinase Domain In Complex
           With An Mkk5 Binding Fragment
 pdb|4IC8|A Chain A, Crystal Structure Of The Apo Erk5 Kinase Domain
 pdb|4IC8|B Chain B, Crystal Structure Of The Apo Erk5 Kinase Domain
          Length = 442

 Score = 28.9 bits (63), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 67  EHVAGKWYSVPDLRLRDHRFTVPLD 91
           E+VA +WY  P+L L  H +T  +D
Sbjct: 222 EYVATRWYRAPELMLSLHEYTQAID 246


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,542,661
Number of Sequences: 62578
Number of extensions: 511458
Number of successful extensions: 1249
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 9
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)