Query 014460
Match_columns 424
No_of_seqs 305 out of 1587
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:20:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1342 Histone deacetylase co 100.0 1E-123 3E-128 915.1 34.4 399 13-411 3-402 (425)
2 PTZ00063 histone deacetylase; 100.0 1E-113 2E-118 880.6 40.6 388 15-402 2-393 (436)
3 PTZ00346 histone deacetylase; 100.0 6.7E-98 1E-102 760.2 38.3 371 14-385 17-401 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 2.7E-83 5.8E-88 643.1 31.8 324 17-349 2-335 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 6.2E-80 1.4E-84 615.1 24.0 297 24-328 1-311 (311)
6 KOG1343 Histone deacetylase co 100.0 6.6E-51 1.4E-55 440.8 23.0 289 34-334 463-762 (797)
7 KOG1344 Predicted histone deac 100.0 3E-42 6.5E-47 321.0 13.3 285 15-314 12-305 (324)
8 KOG1343 Histone deacetylase co 100.0 2.2E-37 4.8E-42 335.7 10.8 312 17-333 29-358 (797)
9 cd04502 SGNH_hydrolase_like_7 75.1 8.5 0.00018 34.2 6.3 68 231-306 25-95 (171)
10 cd01835 SGNH_hydrolase_like_3 74.9 15 0.00032 33.4 7.9 74 232-306 41-117 (193)
11 COG3914 Spy Predicted O-linked 74.7 75 0.0016 34.9 14.0 147 154-318 312-476 (620)
12 cd01836 FeeA_FeeB_like SGNH_hy 73.4 9.6 0.00021 34.4 6.3 66 232-306 44-112 (191)
13 TIGR03018 pepcterm_TyrKin exop 72.9 17 0.00037 33.9 8.0 24 247-270 134-157 (207)
14 KOG0121 Nuclear cap-binding pr 71.9 3.9 8.4E-05 36.3 3.0 42 151-192 73-121 (153)
15 cd04237 AAK_NAGS-ABP AAK_NAGS- 69.8 9.7 0.00021 37.7 5.8 63 244-314 1-63 (280)
16 cd01822 Lysophospholipase_L1_l 63.3 29 0.00064 30.5 7.2 65 231-306 39-107 (177)
17 cd01828 sialate_O-acetylestera 62.3 27 0.00059 30.8 6.8 42 259-306 46-93 (169)
18 cd01832 SGNH_hydrolase_like_1 62.1 30 0.00065 30.9 7.1 53 248-306 55-111 (185)
19 cd01825 SGNH_hydrolase_peri1 S 61.6 24 0.00053 31.4 6.4 50 252-306 47-102 (189)
20 PF02310 B12-binding: B12 bind 60.4 21 0.00047 29.7 5.4 48 253-311 43-90 (121)
21 cd04501 SGNH_hydrolase_like_4 60.3 38 0.00083 30.2 7.4 65 231-306 34-102 (183)
22 TIGR02855 spore_yabG sporulati 57.8 26 0.00055 34.9 6.0 59 251-310 143-207 (283)
23 TIGR01007 eps_fam capsular exo 54.8 1.6E+02 0.0035 26.9 10.9 16 173-188 44-59 (204)
24 TIGR01890 N-Ac-Glu-synth amino 54.7 19 0.00042 37.7 5.1 62 245-314 1-62 (429)
25 cd02068 radical_SAM_B12_BD B12 54.4 39 0.00086 28.8 6.2 49 251-311 29-77 (127)
26 PRK05279 N-acetylglutamate syn 53.8 36 0.00077 35.8 6.9 64 244-315 8-71 (441)
27 PF13472 Lipase_GDSL_2: GDSL-l 53.1 12 0.00025 32.4 2.6 72 231-307 33-108 (179)
28 cd00840 MPP_Mre11_N Mre11 nucl 52.8 61 0.0013 29.7 7.7 59 242-308 23-84 (223)
29 cd01829 SGNH_hydrolase_peri2 S 52.3 46 0.001 30.1 6.7 53 254-306 52-114 (200)
30 PRK14476 nitrogenase molybdenu 52.1 55 0.0012 34.8 8.0 70 248-328 79-154 (455)
31 cd01841 NnaC_like NnaC (CMP-Ne 51.0 62 0.0013 28.6 7.1 69 231-306 26-96 (174)
32 TIGR01278 DPOR_BchB light-inde 50.5 30 0.00066 37.3 5.8 58 248-315 72-130 (511)
33 cd01443 Cdc25_Acr2p Cdc25 enzy 50.0 88 0.0019 26.0 7.5 67 231-313 42-110 (113)
34 cd01830 XynE_like SGNH_hydrola 49.9 39 0.00085 31.1 5.8 59 244-305 60-124 (204)
35 COG1618 Predicted nucleotide k 49.4 61 0.0013 30.1 6.7 59 230-307 79-137 (179)
36 cd01838 Isoamyl_acetate_hydrol 49.3 41 0.00089 30.0 5.8 45 261-306 63-113 (199)
37 PF05582 Peptidase_U57: YabG p 49.1 43 0.00093 33.5 6.1 59 251-310 144-208 (287)
38 cd01833 XynB_like SGNH_hydrola 47.3 54 0.0012 28.4 6.0 42 256-299 35-76 (157)
39 PRK13236 nitrogenase reductase 47.3 20 0.00044 35.6 3.6 23 173-196 32-54 (296)
40 cd01820 PAF_acetylesterase_lik 47.1 28 0.00061 32.4 4.4 44 257-306 85-134 (214)
41 TIGR01969 minD_arch cell divis 46.7 22 0.00047 33.6 3.6 17 173-189 27-43 (251)
42 cd01972 Nitrogenase_VnfE_like 46.7 76 0.0016 33.3 8.0 72 247-328 75-148 (426)
43 cd01844 SGNH_hydrolase_like_6 46.0 46 0.00099 29.8 5.5 48 254-306 50-99 (177)
44 KOG3147 6-phosphogluconolacton 45.6 70 0.0015 31.4 6.8 85 190-277 70-158 (252)
45 TIGR01285 nifN nitrogenase mol 45.4 72 0.0016 33.6 7.6 69 248-327 78-152 (432)
46 COG0420 SbcD DNA repair exonuc 44.9 81 0.0017 32.4 7.8 66 242-318 22-90 (390)
47 CHL00073 chlN photochlorophyll 44.2 52 0.0011 35.2 6.3 55 248-312 84-140 (457)
48 CHL00076 chlB photochlorophyll 44.2 56 0.0012 35.4 6.6 59 248-316 72-132 (513)
49 cd01971 Nitrogenase_VnfN_like 42.8 98 0.0021 32.5 8.1 59 248-316 73-132 (427)
50 PF04321 RmlD_sub_bind: RmlD s 41.3 10 0.00022 37.4 0.4 54 253-306 43-99 (286)
51 PF10609 ParA: ParA/MinD ATPas 41.0 83 0.0018 25.6 5.6 56 233-308 5-61 (81)
52 KOG2749 mRNA cleavage and poly 40.6 3.7E+02 0.0079 28.2 11.3 120 166-309 122-248 (415)
53 PRK04531 acetylglutamate kinas 39.8 45 0.00098 34.9 5.0 53 254-314 24-80 (398)
54 cd01966 Nitrogenase_NifN_1 Nit 39.6 1.3E+02 0.0027 31.6 8.3 70 248-328 68-143 (417)
55 PRK10528 multifunctional acyl- 39.2 1E+02 0.0022 28.2 6.7 65 231-306 46-114 (191)
56 cd01967 Nitrogenase_MoFe_alpha 38.7 1.3E+02 0.0028 31.1 8.1 66 248-323 74-141 (406)
57 cd01981 Pchlide_reductase_B Pc 37.6 69 0.0015 33.5 6.0 57 248-314 72-130 (430)
58 cd07388 MPP_Tt1561 Thermus the 37.0 1.3E+02 0.0029 28.8 7.3 55 248-312 19-73 (224)
59 TIGR01361 DAHP_synth_Bsub phos 36.9 2.6E+02 0.0056 27.4 9.5 88 231-331 134-224 (260)
60 TIGR00583 mre11 DNA repair pro 36.9 1.3E+02 0.0029 31.5 7.9 48 243-298 25-72 (405)
61 PLN02825 amino-acid N-acetyltr 36.7 70 0.0015 34.7 5.9 62 245-314 1-62 (515)
62 CHL00175 minD septum-site dete 36.1 39 0.00085 32.9 3.7 19 173-191 42-60 (281)
63 cd00229 SGNH_hydrolase SGNH_hy 35.9 1.2E+02 0.0025 25.6 6.3 53 255-307 59-113 (187)
64 TIGR03282 methan_mark_13 putat 35.9 1.8E+02 0.0038 30.1 8.2 53 248-311 62-116 (352)
65 cd01965 Nitrogenase_MoFe_beta_ 35.1 1.2E+02 0.0026 31.7 7.3 65 248-323 68-138 (428)
66 PF09383 NIL: NIL domain; Int 35.0 21 0.00046 27.8 1.3 51 251-301 17-71 (76)
67 cd03111 CpaE_like This protein 34.7 49 0.0011 27.5 3.5 15 175-189 29-43 (106)
68 cd01821 Rhamnogalacturan_acety 34.5 1.1E+02 0.0024 27.7 6.2 45 261-306 65-113 (198)
69 cd06167 LabA_like LabA_like pr 34.1 1.5E+02 0.0032 25.7 6.7 41 257-312 95-135 (149)
70 PRK10818 cell division inhibit 33.5 45 0.00097 32.2 3.6 18 173-190 29-46 (270)
71 CHL00202 argB acetylglutamate 33.3 1.3E+02 0.0028 29.8 6.8 64 244-314 6-69 (284)
72 cd03110 Fer4_NifH_child This p 33.1 33 0.00071 30.8 2.4 14 176-189 25-38 (179)
73 cd02067 B12-binding B12 bindin 32.6 1.3E+02 0.0029 25.1 5.9 35 255-300 44-78 (119)
74 COG4671 Predicted glycosyl tra 31.6 1.9E+02 0.0041 30.2 7.6 31 239-269 84-114 (400)
75 PF02701 zf-Dof: Dof domain, z 31.1 18 0.00039 27.9 0.3 11 156-166 16-26 (63)
76 TIGR00034 aroFGH phospho-2-deh 30.6 2.7E+02 0.0059 28.7 8.6 29 162-193 239-269 (344)
77 cd05781 DNA_polB_B3_exo DEDDy 30.5 2.8E+02 0.0062 25.6 8.3 88 177-303 4-91 (188)
78 TIGR02370 pyl_corrinoid methyl 29.9 1.3E+02 0.0029 28.0 6.0 36 255-301 129-164 (197)
79 KOG1832 HIV-1 Vpr-binding prot 29.9 24 0.00051 40.5 1.0 42 380-422 1385-1428(1516)
80 PLN02512 acetylglutamate kinas 29.6 1.5E+02 0.0032 29.8 6.6 64 243-313 29-92 (309)
81 PRK13232 nifH nitrogenase redu 29.5 53 0.0011 31.9 3.3 17 173-189 27-43 (273)
82 TIGR00259 thylakoid_BtpA membr 29.5 4E+02 0.0086 26.3 9.4 59 257-329 167-227 (257)
83 PF14606 Lipase_GDSL_3: GDSL-l 29.3 89 0.0019 29.1 4.6 49 253-312 51-105 (178)
84 PRK13233 nifH nitrogenase redu 29.3 51 0.0011 32.0 3.2 16 174-189 30-45 (275)
85 cd01974 Nitrogenase_MoFe_beta 29.2 2.3E+02 0.0049 29.8 8.2 63 248-321 72-140 (435)
86 cd02036 MinD Bacterial cell di 28.8 67 0.0014 28.3 3.6 21 171-191 24-44 (179)
87 cd01979 Pchlide_reductase_N Pc 28.8 2E+02 0.0044 29.7 7.7 70 248-328 74-145 (396)
88 PF13277 YmdB: YmdB-like prote 28.8 2.2E+02 0.0047 28.1 7.3 119 246-374 12-135 (253)
89 PRK11148 cyclic 3',5'-adenosin 28.5 2.1E+02 0.0045 27.8 7.4 54 246-308 39-93 (275)
90 cd03466 Nitrogenase_NifN_2 Nit 28.5 1.9E+02 0.0041 30.4 7.4 69 248-327 71-144 (429)
91 TIGR01279 DPOR_bchN light-inde 28.0 2.5E+02 0.0055 29.2 8.2 57 247-313 70-128 (407)
92 TIGR01968 minD_bact septum sit 27.7 67 0.0015 30.3 3.7 19 171-189 26-44 (261)
93 PRK12755 phospho-2-dehydro-3-d 27.7 2.7E+02 0.0058 28.9 8.0 31 160-193 244-276 (353)
94 TIGR02026 BchE magnesium-proto 27.6 1.4E+02 0.003 32.0 6.4 45 254-310 56-100 (497)
95 PF02310 B12-binding: B12 bind 27.6 1.8E+02 0.0038 24.0 5.9 99 165-313 18-117 (121)
96 PF02585 PIG-L: GlcNAc-PI de-N 27.5 1.1E+02 0.0024 25.8 4.6 27 247-273 86-112 (128)
97 TIGR01283 nifE nitrogenase mol 27.4 2.5E+02 0.0053 29.7 8.1 57 248-314 108-166 (456)
98 PRK13398 3-deoxy-7-phosphohept 27.2 3.8E+02 0.0083 26.4 8.9 55 241-305 146-201 (266)
99 cd02651 nuc_hydro_IU_UC_XIUA n 27.0 66 0.0014 32.0 3.5 52 253-316 105-156 (302)
100 TIGR02931 anfK_nitrog Fe-only 26.9 2.2E+02 0.0048 30.3 7.7 69 249-328 80-159 (461)
101 cd02072 Glm_B12_BD B12 binding 26.6 2.1E+02 0.0045 25.2 6.2 45 256-311 45-90 (128)
102 PF00148 Oxidored_nitro: Nitro 26.5 1.8E+02 0.0039 29.8 6.8 57 247-313 60-118 (398)
103 cd06558 crotonase-like Crotona 26.3 2.8E+02 0.0061 24.9 7.4 68 242-309 24-102 (195)
104 COG1091 RfbD dTDP-4-dehydrorha 26.2 1.1E+02 0.0023 30.7 4.8 66 253-318 42-119 (281)
105 cd07402 MPP_GpdQ Enterobacter 25.7 2.3E+02 0.0051 26.3 6.9 56 243-307 21-77 (240)
106 cd02065 B12-binding_like B12 b 25.4 1.9E+02 0.0042 23.8 5.7 15 256-270 45-59 (125)
107 TIGR00619 sbcd exonuclease Sbc 25.3 3.1E+02 0.0067 26.5 7.8 63 244-317 23-89 (253)
108 PRK13234 nifH nitrogenase redu 25.3 69 0.0015 31.8 3.3 24 171-195 28-51 (295)
109 cd01827 sialate_O-acetylestera 25.2 1.5E+02 0.0032 26.4 5.3 37 259-299 65-105 (188)
110 TIGR02016 BchX chlorophyllide 24.9 77 0.0017 31.6 3.6 18 172-189 25-42 (296)
111 cd01839 SGNH_arylesterase_like 24.8 1.9E+02 0.0041 26.4 6.1 36 259-299 77-117 (208)
112 PF14639 YqgF: Holliday-juncti 24.7 1.6E+02 0.0035 26.5 5.3 21 248-268 50-70 (150)
113 cd06533 Glyco_transf_WecG_TagA 24.6 1.9E+02 0.0042 26.2 5.9 46 253-312 91-136 (171)
114 COG1692 Calcineurin-like phosp 24.4 2.8E+02 0.0061 27.4 7.1 61 246-316 15-75 (266)
115 PF09936 Methyltrn_RNA_4: SAM- 24.4 4.2E+02 0.0091 24.9 8.0 26 288-313 120-145 (185)
116 COG1654 BirA Biotin operon rep 23.5 51 0.0011 26.6 1.6 51 268-318 14-65 (79)
117 cd01973 Nitrogenase_VFe_beta_l 23.3 2.2E+02 0.0048 30.3 6.8 64 248-322 73-146 (454)
118 COG4017 Uncharacterized protei 23.2 2.4E+02 0.0053 27.0 6.2 97 175-291 45-144 (254)
119 PF06925 MGDG_synth: Monogalac 22.5 93 0.002 27.9 3.3 23 244-266 72-94 (169)
120 PF09140 MipZ: ATPase MipZ; I 22.5 70 0.0015 31.6 2.7 27 242-270 81-107 (261)
121 PRK13396 3-deoxy-7-phosphohept 22.5 6.6E+02 0.014 26.0 9.8 122 239-385 218-345 (352)
122 cd00316 Oxidoreductase_nitroge 22.3 3.5E+02 0.0077 27.4 8.0 63 251-324 70-134 (399)
123 PRK14478 nitrogenase molybdenu 22.2 3.3E+02 0.0072 29.1 8.0 56 248-313 106-163 (475)
124 PF03808 Glyco_tran_WecB: Glyc 22.2 2.8E+02 0.0061 25.1 6.5 43 255-311 95-137 (172)
125 PF10649 DUF2478: Protein of u 22.2 3.8E+02 0.0082 24.5 7.2 71 242-327 75-145 (159)
126 COG0683 LivK ABC-type branched 22.1 3.3E+02 0.0072 27.5 7.7 31 167-197 138-170 (366)
127 cd02117 NifH_like This family 22.1 1E+02 0.0023 28.6 3.7 21 173-194 26-46 (212)
128 PRK07854 enoyl-CoA hydratase; 22.0 4.2E+02 0.0091 25.3 8.0 64 241-308 24-94 (243)
129 cd02071 MM_CoA_mut_B12_BD meth 22.0 2.9E+02 0.0062 23.5 6.2 36 255-301 44-79 (122)
130 KOG1615 Phosphoserine phosphat 22.0 2.2E+02 0.0047 27.4 5.6 79 287-372 91-169 (227)
131 PF01729 QRPTase_C: Quinolinat 21.7 57 0.0012 30.0 1.8 47 269-320 99-145 (169)
132 TIGR00696 wecB_tagA_cpsF bacte 21.5 2.7E+02 0.006 25.6 6.3 47 253-313 92-138 (177)
133 TIGR02932 vnfK_nitrog V-contai 21.3 3.5E+02 0.0075 28.8 7.8 70 248-328 76-155 (457)
134 TIGR02482 PFKA_ATP 6-phosphofr 21.0 3.6E+02 0.0077 27.2 7.5 77 241-318 10-109 (301)
135 KOG1610 Corticosteroid 11-beta 21.0 4E+02 0.0086 27.3 7.7 78 251-329 147-230 (322)
136 TIGR01287 nifH nitrogenase iro 20.7 1E+02 0.0022 29.8 3.5 16 173-188 26-41 (275)
137 cd07410 MPP_CpdB_N Escherichia 20.4 1.4E+02 0.0031 29.0 4.4 54 251-306 34-89 (277)
138 TIGR01281 DPOR_bchL light-inde 20.4 1.1E+02 0.0023 29.5 3.5 19 173-192 26-44 (268)
139 PRK02842 light-independent pro 20.3 2.7E+02 0.0059 29.2 6.8 56 248-313 83-142 (427)
140 COG0825 AccA Acetyl-CoA carbox 20.2 9.2E+02 0.02 24.5 13.1 136 242-385 133-297 (317)
141 PF03266 NTPase_1: NTPase; In 20.1 44 0.00095 30.5 0.7 41 260-309 94-134 (168)
No 1
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-123 Score=915.15 Aligned_cols=399 Identities=68% Similarity=1.217 Sum_probs=382.2
Q ss_pred CCCCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccch
Q 014460 13 DGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ 92 (424)
Q Consensus 13 ~~~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~ 92 (424)
+..+++|+|+|+++.+.|+||.+|||+|.|++++++|+..|||.++|++++|..|+.+||.+|||.+||++|++.+|+++
T Consensus 3 ~~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~ 82 (425)
T KOG1342|consen 3 SLIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENM 82 (425)
T ss_pred CcCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCcccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHH
Q 014460 93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (424)
Q Consensus 93 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll 172 (424)
.....++++|++++|||+|.++|++|++++||||.||++|+++++++||||+||+|||++++||||||+||||+||+.||
T Consensus 83 ~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLl 162 (425)
T KOG1342|consen 83 ETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELL 162 (425)
T ss_pred cccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHH
Confidence 77667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHH
Q 014460 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKP 251 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~-~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~ 251 (424)
|.++||||||||+|||||||++||.++||+|+|||+|+ .||||||.+.++|.|+|+.|.|||||.+|++|+.|..+|++
T Consensus 163 K~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~p 242 (425)
T KOG1342|consen 163 KYHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKP 242 (425)
T ss_pred HhCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999996 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCC
Q 014460 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVE 331 (424)
Q Consensus 252 iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~ 331 (424)
||.++++.|+|++||+|||.|++.+|+||+||||++|+++|+++++++++|+++||||||+++||||||||+|++++|+.
T Consensus 243 Ii~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~ 322 (425)
T KOG1342|consen 243 IISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQE 322 (425)
T ss_pred HHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCccceeCCCCCCCCCccccCcCCCCC
Q 014460 332 VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEADEDQEDGDER 411 (424)
Q Consensus 332 ~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~ 411 (424)
++.+||+++||++|+|||+|++.+++++|+|++++|++|++++.+||++++++||||||.+|+......+.+++.+++.|
T Consensus 323 ~~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~ 402 (425)
T KOG1342|consen 323 LPNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLR 402 (425)
T ss_pred ccccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999732111112444555554
No 2
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=1.1e-113 Score=880.59 Aligned_cols=388 Identities=64% Similarity=1.172 Sum_probs=370.1
Q ss_pred CCCeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHH
Q 014460 15 VKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQD 94 (424)
Q Consensus 15 ~~~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~ 94 (424)
.++||+|+||++++.|.++++|||+|.|+++++++|.++|+.+.+++++|++|+.++|++|||++||++|++.+++...+
T Consensus 2 ~~~~v~~~yd~~~~~h~~g~~HP~~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~L~~~~~~~~~~ 81 (436)
T PTZ00063 2 MRKRVSYFYDPDIGSYYYGPGHPMKPQRIRMAHALILSYDLYKHMEIYRPHKSVEPELVLFHDEEYVDFLSSISPENYRD 81 (436)
T ss_pred CCceEEEEECccccCcCCcCcCCcChHHHHHHHHHHHhCCCcccCeEecCCCCCHHHHHHhCCHHHHHHHHHhChhhccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999877654332
Q ss_pred HHHhhhhcccC--CCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHH
Q 014460 95 QLRQLKRFNVG--EDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELL 172 (424)
Q Consensus 95 ~~~~~~~~~~~--~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll 172 (424)
....+.+|+++ .|||+|+++|++|++++||||.||+++++|++++||||+||+|||++++|+||||||||||||++|+
T Consensus 82 ~~~~~~~f~lg~~~D~pv~~gl~~~a~~aaGgsl~Aa~~l~~g~~~iAin~~GG~HHA~~~~A~GFC~~NdiaiAi~~L~ 161 (436)
T PTZ00063 82 FTYQLKRFNVGEATDCPVFDGLFEFQQSCAGASIDGAYKLNNHQADICVNWSGGLHHAKRSEASGFCYINDIVLGILELL 161 (436)
T ss_pred chhhhhhcccCCCCCCCcccHHHHHHHHHHhHHHHHHHHHHcCCCCEEeeCCCCCCCCccCCCCceeeecHHHHHHHHHH
Confidence 22235667887 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHH
Q 014460 173 KQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~i 252 (424)
+.++||||||||||||||||+|||.+++|+|+|||++++||||||...++|.|.|++|++||||++|++|++|+.+|+++
T Consensus 162 ~~~~RVliID~DvHHGdGtqe~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~i 241 (436)
T PTZ00063 162 KYHARVMYIDIDVHHGDGVEEAFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPV 241 (436)
T ss_pred HhCCeEEEEeCCCCCCcchHHHhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999997799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCC--
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGV-- 330 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~-- 330 (424)
|.|++++|+||+||+|||+|+|.+||||.|+||++||++|+++++++++|+++||||||+++++||||+++|++++|.
T Consensus 242 i~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~ 321 (436)
T PTZ00063 242 ISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKHD 321 (436)
T ss_pred HHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCccceeCCCCCCCCCcc
Q 014460 331 EVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAPSVQFQERPPDSELPEAD 402 (424)
Q Consensus 331 ~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~sv~~~~~~~~~~~~~~~ 402 (424)
+++++||+|+||++|+|+|+|++.+++|+|+|+++||++|+++++++|+.++++|||||+.+||+++..+.+
T Consensus 322 ~~~~~iP~~~~~~~~~~~~~l~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~~~~~~~~ 393 (436)
T PTZ00063 322 EMSDQISLNDYYDYYAPDFQLHLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPDFFDRDID 393 (436)
T ss_pred cCCccCCCCcchhhcCCCeEeecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCccccccccc
Confidence 699999999999999999999999999999999999999999999999999999999999999988665543
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=6.7e-98 Score=760.16 Aligned_cols=371 Identities=40% Similarity=0.729 Sum_probs=333.1
Q ss_pred CCCCeEEEE----EcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCc
Q 014460 14 GVKRKVCYF----YDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITP 89 (424)
Q Consensus 14 ~~~~~v~~~----y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~ 89 (424)
.++++++|| |.+++..++|+++|||+|.|+++++++|+++|+...++++.|++|+.++|++||+++||++|++.+.
T Consensus 17 ~~~~~~~~~~~~~y~~~~~~~~~~~~HPe~P~Rl~~~~~ll~~~gl~~~~~~~~p~~At~eeL~~vHs~~YI~~l~~~~~ 96 (429)
T PTZ00346 17 ESRGRVALIDTSGYASDMNISAFVPQHAMKPYRVLAAMEIVRSLKIDAHCRTVVPPLVKVEELMAYHTDTYLANLGLHSC 96 (429)
T ss_pred cccceeEEEecCccccccccccCCCcCCCCHHHHHHHHHHHHhcCCcccCeeecCCCCCHHHHHHhCCHHHHHHHHHhcc
Confidence 356789999 6677788999999999999999999999999999999999999999999999999999999987432
Q ss_pred cchHHHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHH
Q 014460 90 ETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAIL 169 (424)
Q Consensus 90 ~~~~~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~ 169 (424)
...... .....+.++.|||+++++|++|++++||+|.||+++++|+.++|+||+||+|||++++|+||||||||||||+
T Consensus 97 ~~~~~~-~~~~~~~~d~Dtpv~~~~~~~a~laaGgsl~Aa~~v~~g~~~~Ai~~pGG~HHA~~~~a~GFC~fNdvAIAa~ 175 (429)
T PTZ00346 97 RSWLWN-AETSKVFFSGDCPPVEGLMEHSIATASGTLMGAVLLNSGQVDVAVHWGGGMHHSKCGECSGFCYVNDIVLGIL 175 (429)
T ss_pred cccccc-cccccccccCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCcCcCCCCCCCcchHHhHHHHHHH
Confidence 211000 0112345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCC-CCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHH
Q 014460 170 ELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFG-DYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYL 248 (424)
Q Consensus 170 ~ll~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~-~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~ 248 (424)
+|+++++||||||||||||||||+|||+||+|||+|+|+++ .||||||...++|.|.|+||++|||||+|++|++|+.+
T Consensus 176 ~ll~~~~RVliID~DVHHGnGTqeiF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~ 255 (429)
T PTZ00346 176 ELLKCHDRVLYVDIDMHHGDGVDEAFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGL 255 (429)
T ss_pred HHHHcCCeEEEEeCCCCCCchHHHHHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999995 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhh
Q 014460 249 FKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVAL 328 (424)
Q Consensus 249 ~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~ 328 (424)
|+++|.|++++|+||+||||||||+|.+||||.|+||.+||.+|+++++++++|++++|||||++.++||||+++|++++
T Consensus 256 f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~ 335 (429)
T PTZ00346 256 FEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILT 335 (429)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC--CC--chhhhhhcCCCCcCccCCCCCCCCC-cHHHHHHHHHHHHH----HhhcCCCCC
Q 014460 329 GVEVDDK--MP--QHEYYEYFGPDYTLHVAPSNMENKN-SRQLLEEIRNKLLE----YLSKLQHAP 385 (424)
Q Consensus 329 g~~~~~~--~P--~~~~~~~~~p~~~l~~~~~~~~~~n-~~~~l~~i~~~~~~----~~~~l~~~~ 385 (424)
|.++|++ || ..+|.++|+|+|+|++.++++.+.| +....++..+++.+ +++.++..|
T Consensus 336 g~~i~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (429)
T PTZ00346 336 GHPLPPNTVLPVAEMPLSGWLFQDSPLLIVAQDRSNHVLPGLHCQRAYQMMTEQIDRHVPHIQPHP 401 (429)
T ss_pred CCCCCCCCCCCCCCCchhhhhcCCCccccccccccccCCCcchhHHHHHHHHHHHHhhhhccCCcH
Confidence 9999866 77 3578899999999998877777777 34555555555555 455555333
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.7e-83 Score=643.13 Aligned_cols=324 Identities=33% Similarity=0.550 Sum_probs=297.1
Q ss_pred CeEEEEEcCCCCCCCCCCCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHHH
Q 014460 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQL 96 (424)
Q Consensus 17 ~~v~~~y~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~~ 96 (424)
+++.++|++.+..|.++..|||+|.|++++.++|++.++...+++++|++++.++|+++|+++||++|++.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~Hpe~p~R~~~~~~~l~~~~~~~~~~~~~p~~~~~~~l~~vH~~~yv~~l~~~~~~~~---- 77 (340)
T COG0123 2 MKTALIYHPEFLEHEPPPGHPENPDRLRLILELLESSGLPDSLELVEPRPATLEELLLVHSPDYVEFLESLSEEEG---- 77 (340)
T ss_pred CcceEeeCHHHhcCCCCCCCCCChHHHHHHHHHHHhcCccccccccCCCcCCHHHHHhhCCHHHHHHHHHhccccc----
Confidence 5789999999999999999999999999999999999988889999999999999999999999999999876511
Q ss_pred HhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcCccceeeecCCCCCCccccCCccceeechHHHHHHHHHhc-C
Q 014460 97 RQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ-H 175 (424)
Q Consensus 97 ~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~-~ 175 (424)
.+.++.|||+++++|++|++++|++++|++.+++|+...++++.||+|||++++++|||+|||+||||++|+++ .
T Consensus 78 ----~~~~d~d~~~s~~~~~~a~~a~G~al~A~~~v~~g~~~~~~~~rppgHHA~~~~a~GFC~fNn~Aiaa~~l~~~~~ 153 (340)
T COG0123 78 ----YGNLDGDTPVSPGTYEAARLAAGGALTAVDAVLEGEDNAFALVRPPGHHAGRDRASGFCLFNNVAIAAKYLLKKGV 153 (340)
T ss_pred ----cccccCCCccChHHHHHHHHHhhHHHHHHHHHHcCccceEEECCCCcccccCCCCceeeeecHHHHHHHHHHHcCC
Confidence 35688999999999999999999999999999999766777777777999999999999999999999999996 6
Q ss_pred CcEEEEEccCcCCcccccccccCCCeEEEecCCC-CCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHH
Q 014460 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIG 254 (424)
Q Consensus 176 ~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~-~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~ 254 (424)
+||+|||||||||||||+|||+|++|+|+|+|++ ..+|||||..+++|.|+ +|+++|||||+|++|++|+.+|+.++.
T Consensus 154 ~RVaIiD~DvHHGnGTqeify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~ 232 (340)
T COG0123 154 KRVAIIDFDVHHGNGTQEIFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVL 232 (340)
T ss_pred CcEEEEEecCCCChhhHHHHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 46999999999999998 999999999999999999999999999
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc----CCCEEEEeCCCCCCchhhhhHHHHHhhhhCC
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF----NVPLLLLGGGGYTIRNVARCWCYETGVALGV 330 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~----~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~ 330 (424)
|++++|+||+||||||||+|.+||||+|+||.++|.+++++++++ ++|+++||||||+..+++++|++++..+.|.
T Consensus 233 ~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~ 312 (340)
T COG0123 233 PLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGL 312 (340)
T ss_pred HHHHhcCCCEEEEecCcccCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999988764 5699999999999999999999999999996
Q ss_pred C---CCCCCCch-hhhhhcCCCC
Q 014460 331 E---VDDKMPQH-EYYEYFGPDY 349 (424)
Q Consensus 331 ~---~~~~~P~~-~~~~~~~p~~ 349 (424)
. .+..+|.. +++..+.+++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~ 335 (340)
T COG0123 313 VEEELEEPLPEDLELRRAFRADY 335 (340)
T ss_pred Cccccccccccchhhhhhhccch
Confidence 4 33334443 4455555544
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=6.2e-80 Score=615.13 Aligned_cols=297 Identities=34% Similarity=0.615 Sum_probs=237.3
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHHHHHHc-CCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHHHHhhhh-
Q 014460 24 DPEVGNYYYGQGHPMKPHRIRMTHALLAHY-GLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQLKR- 101 (424)
Q Consensus 24 ~~~~~~~~~~~~HPe~p~R~~~i~~ll~~~-gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~~~- 101 (424)
+|.|. |.+++.|||+|+|++.+.+.|++. ++++. ++|+.++|++|||++||++|++.+.............
T Consensus 1 ~~~~~-~~~~~~Hpe~p~R~~~i~~~L~~~~~l~~~------~~a~~~~L~~vH~~~Yv~~l~~~~~~~~~~~~~~~~~~ 73 (311)
T PF00850_consen 1 HPQYQ-HQLGDGHPESPERLESIVEALKESYGLLPR------RPATDEELLRVHDPEYVDFLESASKEAKEEEEAGSPEF 73 (311)
T ss_dssp ----T-T-CCTTSSSCTHHHHHHHHHHHHTTTGGGG----------HHHHTTTS-HHHHHHHHHHHHHTSGCTHHHHHHH
T ss_pred CCccc-CCCCCCcCCCHHHHHHHHHHHHHhcCCCCC------CCCCHHHHHHcCCHHHHHHHHHhccccccccccccccc
Confidence 46777 889999999999999777777664 87654 9999999999999999999998654322211000001
Q ss_pred --cccCCCCcCCcchHHHHHHhhhhHHHHHHHhhcC--ccceeeecCCCCCCccccCCccceeechHHHHHHHHHhc--C
Q 014460 102 --FNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHG--LCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQ--H 175 (424)
Q Consensus 102 --~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g--~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~--~ 175 (424)
..-+.|||+++++++++++++|+++.|++.+++| +..+|+++||| |||++++++||||||||||||++|+++ .
T Consensus 74 ~~~~~~~dt~~~~~~~~~a~~a~g~~l~a~~~v~~g~~~~~~a~~rppg-HHA~~~~a~GFC~~Nnvaiaa~~l~~~~~~ 152 (311)
T PF00850_consen 74 PNILDDGDTPISPGSWEAARLAAGGTLEAADAVLSGEIKNAFALVRPPG-HHAERDRAMGFCYFNNVAIAAKYLRKKYGL 152 (311)
T ss_dssp CCBTSSSSSEBCTTHHHHHHHHHHHHHHHHHHHHTTSSSEEEEEESS---TT-BTTBBBTTBSS-HHHHHHHHHHHTTTT
T ss_pred ccccCCCCcceehHHHHHHHHHHHHHHHHHHhhhcccccceeeecCccc-cccCcCcCcceeeeccHHHHHHHHhhcccc
Confidence 0016799999999999999999999999999998 45678887777 999999999999999999999999985 4
Q ss_pred CcEEEEEccCcCCcccccccccCCCeEEEecCCC-CCCCC-CCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHH
Q 014460 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFP-GTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPII 253 (424)
Q Consensus 176 ~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~-~~fyP-gtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv 253 (424)
+||+|||||+|||||||+|||+||+|+|+|||++ ..||| +||..+++|.|+|+++++|||||+|++|++|+.+|+++|
T Consensus 153 ~rV~iiD~DvHhGnGtq~if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l 232 (311)
T PF00850_consen 153 KRVAIIDFDVHHGNGTQEIFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEIL 232 (311)
T ss_dssp SSEEEEE-SSS--HHHHHHTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCcccchhheeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhcc
Confidence 8999999999999999999999999999999998 56999 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC----CEEEEeCCCCCCchhhhhHHHHHhhhh
Q 014460 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV----PLLLLGGGGYTIRNVARCWCYETGVAL 328 (424)
Q Consensus 254 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~----pvl~lleGGY~~~~~a~~~~~~~~~l~ 328 (424)
.|++++|+||+||||||||++++||+|.++||+++|.+++++++++.. |++++|||||++.++++||+.+++.|.
T Consensus 233 ~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L~ 311 (311)
T PF00850_consen 233 LPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAALA 311 (311)
T ss_dssp HHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH-
T ss_pred ccchhcccCcEEEEccCcccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999988643 999999999999999999999998873
No 6
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.6e-51 Score=440.77 Aligned_cols=289 Identities=25% Similarity=0.392 Sum_probs=237.9
Q ss_pred CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccchHHHHHhh-hhcccCCCCcCCc
Q 014460 34 QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQQDQLRQL-KRFNVGEDCPVFD 112 (424)
Q Consensus 34 ~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~~~~~~~~-~~~~~~~D~p~~~ 112 (424)
.+||..|.| .+..+. +|++.+|+.+ ||.++|+.||+..|+..+............... ..++ -..+.+
T Consensus 463 ~~~~~~p~r--~~t~~~--~gl~~~c~r~----at~~el~~vHs~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~ 531 (797)
T KOG1343|consen 463 SRSPESPAR--FTTGLH--TGLLGKCERI----ATLEELQLVHSEAHVLLYGSRKLLGDLSLKFESRLPCG---GIGVDS 531 (797)
T ss_pred cCCcccchh--hhcccc--cccccccccc----cchhhhhhcccchhhcccchhhhcccccchhhhhcccc---ceeecc
Confidence 368999999 222222 8999999877 999999999999999985521110000000000 0000 011223
Q ss_pred chHHHHHHhhhhHHHHHHHhh--cCcc--ceeeecCCCCCCccccCCccceeechHHHHHHHHHhcC--CcEEEEEccCc
Q 014460 113 GLFSFCQTYAGGSVGGAVKLN--HGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH--ERVLYVDIDIH 186 (424)
Q Consensus 113 ~~~~~a~~~aG~sl~aa~~l~--~g~~--~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~ll~~~--~RVlivD~DvH 186 (424)
.+|.+...++|+...++..+. .++. .+|+.+||| |||....++|||+|||+|||+++|+... +||+|||||||
T Consensus 532 dt~~~~~~ssga~~~av~~v~~~~~~~~~g~avvRppG-Hha~~~~a~gfc~fn~vaiaak~l~~~~~~~rilivdwDvh 610 (797)
T KOG1343|consen 532 DTWWNELHSSGAARLAVGCVIELAFKVASGFAVVRPPG-HHAEASTAMGFCFFNSVAIAAKLLQQRSKASRILIVDWDVH 610 (797)
T ss_pred cHHHHHHHHHHHHHHhcchhhhhhhhhhcceeEecCCc-cccccCCcceeeeecchhhhhHHhhhhhhhcceEEEeeccc
Confidence 555566666666666655441 2222 289999999 9999999999999999999999998764 89999999999
Q ss_pred CCcccccccccCCCeEEEecCCC--CCCCCCCCCCCcccCCCCCccEEecCCCCCCC-hHHHHHHHHHHHHHHHHhcCCc
Q 014460 187 HGDGVEEAFYTTDRVMTVSFHKF--GDYFPGTGDIRDIGYSKGKFYSLNVPLDDGID-DESYHYLFKPIIGKVMEVFRPG 263 (424)
Q Consensus 187 HGdGtq~~F~~d~~Vl~iSiH~~--~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~-D~~yl~~~~~iv~p~~~~f~Pd 263 (424)
||||||.+|+.+++|+|+|+|++ ++|||++|..+++|.+.|.|+++|||++.+.. |.+|+.+|+.++.|++++|+||
T Consensus 611 hgngtq~~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd 690 (797)
T KOG1343|consen 611 HGNGTQQAFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPD 690 (797)
T ss_pred CCcceeeeeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCC
Confidence 99999999999999999999999 77999999999999999999999999987554 6999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc-CCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCC
Q 014460 264 AVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF-NVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDD 334 (424)
Q Consensus 264 lIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~-~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~ 334 (424)
+|++|+|||+..+||||+..+|.++|+.+++.|+.+ ++|+++.+||||+.++++++...++..|+|.+.|.
T Consensus 691 ~VlvSagfDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 691 LVLVSAGFDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred eEEEeccccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 999999999999999999999999999999999886 78999999999999999999999999999987774
No 7
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-42 Score=321.02 Aligned_cols=285 Identities=28% Similarity=0.466 Sum_probs=234.6
Q ss_pred CCCeEEEEEcCCCCCCCCC--CCCCCCchHHHHHHHHHHHcCCCCCcEEeCCCCCCHHHHhccChHHHHHHHHhcCccch
Q 014460 15 VKRKVCYFYDPEVGNYYYG--QGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDYVSFLRSITPETQ 92 (424)
Q Consensus 15 ~~~~v~~~y~~~~~~~~~~--~~HPe~p~R~~~i~~ll~~~gl~~~~~~~~p~~at~~~L~~vHs~~Yi~~l~~~~~~~~ 92 (424)
+..|++++|++.|.--..| ..||++..+-..+++.|.+.+++..-.+++|.++|.++|++|||++|++.|+.......
T Consensus 12 p~~k~pIvyS~~Y~i~FmGlEkLHPFDa~Kwg~v~kfL~~~~~l~d~~lvEp~e~t~e~L~rvHtr~YLkslr~s~~vA~ 91 (324)
T KOG1344|consen 12 PAGKLPIVYSRNYAIRFMGLEKLHPFDAAKWGHVHKFLCAMNLLTDETLVEPNEATKEDLLRVHTRKYLKSLRWSIKVAQ 91 (324)
T ss_pred ccccccEEecCccceeecchhhcCcCcccchhHHHHHHHHhccccccccccCcccCHHHHHhHhhHHHHHHhhccceeeE
Confidence 3468999999999644333 67999999999999999999999888899999999999999999999999987432221
Q ss_pred HHHHHhhhhcccCCCCcCCcchHHHHHHhhhhHHHHHHHh-hcCccceeeecCCCCCCccccCCccceeechHHHHHHHH
Q 014460 93 QDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKL-NHGLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILEL 171 (424)
Q Consensus 93 ~~~~~~~~~~~~~~D~p~~~~~~~~a~~~aG~sl~aa~~l-~~g~~~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~~l 171 (424)
.- +......-..|.+-..+....++.+|||+.|++.. ..| +|||..||+|||..+++.|||.+.||.+||..|
T Consensus 92 I~---EiP~v~flPn~~iqrk~LrPlR~QagGtilA~kLAle~G---WAINvGGGFHHcss~rGGGFC~yADItl~I~~l 165 (324)
T KOG1344|consen 92 IT---EIPFVGFLPNCIIQRKLLRPLRLQAGGTILAAKLALERG---WAINVGGGFHHCSSSRGGGFCAYADITLAIFFL 165 (324)
T ss_pred EE---eccccccCchhhhhhhhccceeeccCceeehhhhhhhcC---eEEeecCccceeccCCCCceeehhhHHHHHHHH
Confidence 10 11111222345555556666778999999999854 444 999999999999999999999999999999888
Q ss_pred Hhc--CCcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHH
Q 014460 172 LKQ--HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLF 249 (424)
Q Consensus 172 l~~--~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~ 249 (424)
..+ ..|++|||+|+|+|||.+.-|.++ .|..+.+.. .-.||+.-...+ .-...|.|..|+.|++|+.-+
T Consensus 166 Fer~~isr~mivDLDAHQGNghErdf~~~-~vyi~d~yn-r~iyp~D~~Ak~-------~Ir~kVEl~~gTeddeYLrkl 236 (324)
T KOG1344|consen 166 FERKAISRAMIVDLDAHQGNGHERDFEDD-AVYIFDMYN-RFIYPRDHVAKE-------SIRCKVELRNGTEDDEYLRKL 236 (324)
T ss_pred HhhhhhhheEEEecccccCCccccccccc-eeehhhhhh-hhccchhHHHHH-------HhhheeeeecCCCchHHHHHH
Confidence 765 489999999999999999999887 666655433 237898543321 234567888999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhcCCCEEEEeCCCCCCc
Q 014460 250 KPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 250 ~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~----~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
++.+...+++|+||+||+.||.|.+.|||||.+.+|++|.-+ ++++.+..++|++++..|||-..
T Consensus 237 ~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGGY~K~ 305 (324)
T KOG1344|consen 237 KRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGGYLKA 305 (324)
T ss_pred HHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCceehh
Confidence 999999999999999999999999999999999999999864 67788889999999999999763
No 8
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.2e-37 Score=335.71 Aligned_cols=312 Identities=21% Similarity=0.280 Sum_probs=262.2
Q ss_pred CeEEEEEcCCCCCCC--CCCCCC-CCchHHHHHHHHHHHcCCCCCcEEeCC-CCCCHHHHhccChHHHHHHHHhcCccch
Q 014460 17 RKVCYFYDPEVGNYY--YGQGHP-MKPHRIRMTHALLAHYGLLQNMQVLKP-FPARERDLCRFHADDYVSFLRSITPETQ 92 (424)
Q Consensus 17 ~~v~~~y~~~~~~~~--~~~~HP-e~p~R~~~i~~ll~~~gl~~~~~~~~p-~~at~~~L~~vHs~~Yi~~l~~~~~~~~ 92 (424)
.++.++|++....|. -...|+ +.++|++.+.+.+.+.++...+.+..+ +.++.++++.+|+++|++.+........
T Consensus 29 ~~~~l~~~~~~~~h~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~ke~~~~~~~t~~~~~ 108 (797)
T KOG1343|consen 29 IQKQLLFAEFQKQHENQQELLEKEEKLERLRQIEEELERHRLEQPLLILRNKREAKESAVASVHVKEKLQEFLLSKKMTA 108 (797)
T ss_pred hhhhhhhhhhhhhhhcccccccchhhhhHHHHHHHHhhccCCccccccccchhhcccchhcccccHHHHHHHHhhhhhcc
Confidence 478899999998875 233444 888999999999999999888776666 8899999999999999999876431111
Q ss_pred HHHHHhhhhccc-CCCCcCCcchHHHHHHhhhhHHHHHHHhhcCcc--ceeeecCCCCCCccccCCccceeechHHHHHH
Q 014460 93 QDQLRQLKRFNV-GEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLC--DIAINWAGGLHHAKKCEASGFCYVNDIVLAIL 169 (424)
Q Consensus 93 ~~~~~~~~~~~~-~~D~p~~~~~~~~a~~~aG~sl~aa~~l~~g~~--~~ai~~~gG~HHA~~~~a~GFC~~Ndvaiaa~ 169 (424)
++. +....- .+..++.+..+..+..++|+.+...+.+..|++ ..++.+++| |||.++...|||+|||||++++
T Consensus 109 e~~---l~~~~~~~~~~~~~~~s~~~a~~a~~~~~~~~~~~~~~~~~n~~a~v~p~~-hhsep~~~~~~cl~n~Va~~~~ 184 (797)
T KOG1343|consen 109 EEG---LNHSSSRYPSLYYTSASHSSADQASGSLSGSYKAVLAGKASNGKADFRPPG-HHSEPNLKVGFCLFNNVAERRS 184 (797)
T ss_pred hhh---hhcccCCCCcceecCCchhhhcccCcccccccccccCCcccCccCcCCCCC-CccccchhcchhHHHHHHHHhh
Confidence 110 111111 234566677888899999999997777776653 367788888 9999999999999999999998
Q ss_pred HHHhcC--CcEEEEEccCcCCccccccccc--CCCeEEEecCCC--CCCCCC--CCCCCcccCCCCCccEEecCCCC-CC
Q 014460 170 ELLKQH--ERVLYVDIDIHHGDGVEEAFYT--TDRVMTVSFHKF--GDYFPG--TGDIRDIGYSKGKFYSLNVPLDD-GI 240 (424)
Q Consensus 170 ~ll~~~--~RVlivD~DvHHGdGtq~~F~~--d~~Vl~iSiH~~--~~fyPg--tG~~~e~G~g~g~g~~vNvPL~~-g~ 240 (424)
..+..+ +||+|+|||+|||+|||..|++ |++|+++|+|++ +.|||. .|....+|.|.|.|+++|+|+.. |+
T Consensus 185 ~~~~~~~~rri~i~d~dvh~g~Gtq~~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~ 264 (797)
T KOG1343|consen 185 SPLLRRKKRRILIVDWDVHHGPGTQPSSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGM 264 (797)
T ss_pred ccccccccceeEeecccccCCCCCCCccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCC
Confidence 765544 9999999999999999999999 999999999999 669998 47778999999999999999975 99
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCC-CCCcccCHHhHHHHHHHHHhcC-CCEEEEeCCCCCCchhhh
Q 014460 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDR-LGCFNLSIKGHAECVKFMRSFN-VPLLLLGGGGYTIRNVAR 318 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dp-lg~~~lt~~g~~~~~~~l~~~~-~pvl~lleGGY~~~~~a~ 318 (424)
+|.+|.++|..++.|...+|+||+|+++||||++.+|+ +|.+..|+.+|...+...+-.+ +++.++++|||+++.++.
T Consensus 265 ~~~dy~~~~~~~~~~~~~efqp~Lv~~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~ 344 (797)
T KOG1343|consen 265 TDADYEAAFLHVLLPHASEFQPDLLLVSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQ 344 (797)
T ss_pred cchhhhhhhhccCccchhhcCcceEEeeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHH
Confidence 99999999999999999999999999999999999997 7999999999999998855455 899999999999999999
Q ss_pred hHHHHHhhhhCCCCC
Q 014460 319 CWCYETGVALGVEVD 333 (424)
Q Consensus 319 ~~~~~~~~l~g~~~~ 333 (424)
. ......++|.+.+
T Consensus 345 ~-~~~~~~llg~~~~ 358 (797)
T KOG1343|consen 345 S-QLVLNKLLGKPIE 358 (797)
T ss_pred h-hhhHHhhcCCCcc
Confidence 8 6667778887654
No 9
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=75.12 E-value=8.5 Score=34.25 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=37.6
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~l 306 (424)
.+|..+...+ -.+.+..+.+ .+..++|++||++.|. |...+-+ ..-..+.|.++++.+++. +.+++++
T Consensus 25 v~N~Gi~G~~-~~~~~~~~~~----~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 25 VVNRGFGGST-LADCLHYFDR----LVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred eeecCcccch-HHHHHHHHHh----hhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 4565554332 2334433433 3456899999999998 5443221 222334455677777654 4455554
No 10
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=74.92 E-value=15 Score=33.37 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=41.2
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHH-Hh--cCCCEEEE
Q 014460 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFM-RS--FNVPLLLL 306 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l-~~--~~~pvl~l 306 (424)
+|.... |.+-..++..|...+.+....++||+|+|..|..=.....-+....+.+.|.+.++.+ .. .+.+++++
T Consensus 41 ~N~gi~-G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVR-GDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCC-CCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 455443 3344566666766665544558999999999986443321112245566666544333 22 24565554
No 11
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=74.71 E-value=75 Score=34.94 Aligned_cols=147 Identities=20% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCccceeec--hHHHHHHHHHhcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccE
Q 014460 154 EASGFCYVN--DIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYS 231 (424)
Q Consensus 154 ~a~GFC~~N--dvaiaa~~ll~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~ 231 (424)
...++|-++ +-+=+|...+...=- .-||+|.|-=|++..+|...|--.-||.-. ||+|+....+-.--+..|
T Consensus 312 ~~~~~~~~~~~dd~e~a~~I~~d~Id-ILvDl~g~T~d~r~~v~A~RpAPiqvswlG----y~aT~g~p~~DY~I~D~y- 385 (620)
T COG3914 312 AVEKWYPIGRMDDAEIANAIRTDGID-ILVDLDGHTVDTRCQVFAHRPAPIQVSWLG----YPATTGSPNMDYFISDPY- 385 (620)
T ss_pred hhhheeccCCcCHHHHHHHHHhcCCe-EEEeccCceeccchhhhhcCCCceEEeecc----cccccCCCcceEEeeCce-
Confidence 445788888 333333433332222 458999999999999999998777777554 577654222111001111
Q ss_pred EecCCCCCCChHHHHHHHHHHH---HH---------HHHh----cCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHH
Q 014460 232 LNVPLDDGIDDESYHYLFKPII---GK---------VMEV----FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKF 295 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv---~p---------~~~~----f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~ 295 (424)
-| |+.. ..-|-..+-++= .| -..+ -.+|.+|..||- +.++.+++-+....+.
T Consensus 386 -~v--Pp~a-e~yysEkl~RLp~cy~p~d~~~~v~p~~sR~~lglp~~avVf~c~~--------n~~K~~pev~~~wmqI 453 (620)
T COG3914 386 -TV--PPTA-EEYYSEKLWRLPQCYQPVDGFEPVTPPPSRAQLGLPEDAVVFCCFN--------NYFKITPEVFALWMQI 453 (620)
T ss_pred -ec--CchH-HHHHHHHHHhcccccCCCCCcccCCCCcchhhcCCCCCeEEEEecC--------CcccCCHHHHHHHHHH
Confidence 12 2222 223333222111 00 0111 135788888872 5678899988888899
Q ss_pred HHhcCCCEEEEeCCCCCCchhhh
Q 014460 296 MRSFNVPLLLLGGGGYTIRNVAR 318 (424)
Q Consensus 296 l~~~~~pvl~lleGGY~~~~~a~ 318 (424)
|++...-++++++||=+....++
T Consensus 454 L~~vP~Svl~L~~~~~~~~~~~~ 476 (620)
T COG3914 454 LSAVPNSVLLLKAGGDDAEINAR 476 (620)
T ss_pred HHhCCCcEEEEecCCCcHHHHHH
Confidence 99887789999999955543333
No 12
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=73.44 E-value=9.6 Score=34.44 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=37.9
Q ss_pred EecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCC-CCCCCCCCCcccCHHhHHHHHHHHHh--cCCCEEEE
Q 014460 232 LNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGAD-SLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLL 306 (424)
Q Consensus 232 vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D-~~~~Dplg~~~lt~~g~~~~~~~l~~--~~~pvl~l 306 (424)
.|+.. .|.+-.+++..++. +..++||+|+|..|.. ..... ...-..+.+.++++.+++ -+.+++++
T Consensus 44 ~n~g~-~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~---~~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 44 RLFAK-TGATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLT---SIARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEec-CCcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCC---CHHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 44444 33444566655544 4468999999999984 33221 112223445567777776 35666665
No 13
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=72.91 E-value=17 Score=33.87 Aligned_cols=24 Identities=0% Similarity=0.213 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecC
Q 014460 247 YLFKPIIGKVMEVFRPGAVVLQCG 270 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG 270 (424)
..+.+++..+.++|++|+|||-++
T Consensus 134 ~~l~~~l~~l~~~y~~D~IiiD~p 157 (207)
T TIGR03018 134 QRMRSLLHELARRYPDRIIIIDTP 157 (207)
T ss_pred HHHHHHHHHHHhhCCCCEEEEECC
Confidence 456777777778888899999887
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=71.89 E-value=3.9 Score=36.27 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=30.1
Q ss_pred cccCCccceee----chHH-HHHHHHHhc--CCcEEEEEccCcCCcccc
Q 014460 151 KKCEASGFCYV----NDIV-LAILELLKQ--HERVLYVDIDIHHGDGVE 192 (424)
Q Consensus 151 ~~~~a~GFC~~----Ndva-iaa~~ll~~--~~RVlivD~DvHHGdGtq 192 (424)
.+-.++|||++ ++-| .|.+|+-.. -+|++-||||.-.=+|-|
T Consensus 73 ~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF~eGRQ 121 (153)
T KOG0121|consen 73 FKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGFVEGRQ 121 (153)
T ss_pred CCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccchhhhh
Confidence 45678999987 4444 455555433 289999999988777776
No 15
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=69.83 E-value=9.7 Score=37.74 Aligned_cols=63 Identities=16% Similarity=0.331 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
+|...|++.+ |-+.+|+-..+||-.|-.+...| ++ +.+..-+..+.+.+.+++++.|||....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 3677887765 66889999999999998887654 22 2334444555666889999999987654
No 16
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=63.33 E-value=29 Score=30.54 Aligned_cols=65 Identities=15% Similarity=0.293 Sum_probs=37.4
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhcCCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSFNVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~----~~~~~~l~~~~~pvl~l 306 (424)
.+|.-....+ -...+..+. ..+..++||+|+|+.|.. |... ..+.+.| .++++.+++.+.+++++
T Consensus 39 v~n~g~~G~~-~~~~~~~l~----~~~~~~~pd~v~i~~G~N----D~~~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 39 VINAGVSGDT-TAGGLARLP----ALLAQHKPDLVILELGGN----DGLR--GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred EEecCcCCcc-cHHHHHHHH----HHHHhcCCCEEEEeccCc----cccc--CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4555554222 233444444 344568999999999974 3222 2344444 45666777667777766
No 17
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=62.31 E-value=27 Score=30.80 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=26.5
Q ss_pred hcCCcEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHh--cCCCEEEE
Q 014460 259 VFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRS--FNVPLLLL 306 (424)
Q Consensus 259 ~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g----~~~~~~~l~~--~~~pvl~l 306 (424)
.++||+||++.|..=. ... .+++. +.++++.+++ .+.+++++
T Consensus 46 ~~~pd~vvl~~G~ND~----~~~--~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 46 ALQPKAIFIMIGINDL----AQG--TSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred ccCCCEEEEEeeccCC----CCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 6799999999996432 222 34444 4456666666 46666665
No 18
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=62.06 E-value=30 Score=30.85 Aligned_cols=53 Identities=15% Similarity=0.284 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEE
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~~~~pvl~l 306 (424)
.+...+..++ .++||+|||..|..=... -..+.+.|. .+++.++..+.+++++
T Consensus 55 ~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~ 111 (185)
T cd01832 55 ILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVF 111 (185)
T ss_pred HHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3333344433 479999999999742211 134555554 4555566446666655
No 19
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=61.61 E-value=24 Score=31.45 Aligned_cols=50 Identities=22% Similarity=0.367 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhH----HHHHHHHHhc--CCCEEEE
Q 014460 252 IIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGH----AECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 252 iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~----~~~~~~l~~~--~~pvl~l 306 (424)
.+.+.+...+||+|+|++|..=.. ....+.+.| ..+++.+++. +.+++++
T Consensus 47 ~~~~~l~~~~pd~Vii~~G~ND~~-----~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~ 102 (189)
T cd01825 47 FLQAQLAALPPDLVILSYGTNEAF-----NKQLNASEYRQQLREFIKRLRQILPNASILLV 102 (189)
T ss_pred HHHHHHhhCCCCEEEEECCCcccc-----cCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 344467789999999999965432 122344444 4466666663 5566665
No 20
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=60.39 E-value=21 Score=29.75 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
+...+.+++||+|.+|+- +.-+.....++++.+++.+..+.++.||.+
T Consensus 43 l~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 334567889999999875 222334445677777776443444444443
No 21
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=60.27 E-value=38 Score=30.23 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=36.9
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~l 306 (424)
.+|..+. |.+-.+++..++.. +...+||+|+++.|..=... ..+.+ .+.++++.+++.+.+++++
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~~----~~~~~~d~v~i~~G~ND~~~------~~~~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYED----VIALKPAVVIIMGGTNDIIV------NTSLEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred EEecCcC-CccHHHHHHHHHHH----HHhcCCCEEEEEeccCcccc------CCCHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 4554443 33334555555433 34569999999999753322 12333 3445666677666666655
No 22
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=57.83 E-value=26 Score=34.91 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccC----HHhHHHHHHHHHhc--CCCEEEEeCCC
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGGG 310 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt----~~g~~~~~~~l~~~--~~pvl~lleGG 310 (424)
+.|.+++++++||++|+ .|-|+...+.-...+|. .+-|-++++.++.+ +.-=|++..|.
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGA 207 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGA 207 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 45668899999998765 89999976543333332 23445677777765 33445666664
No 23
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=54.79 E-value=1.6e+02 Score=26.93 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.9
Q ss_pred hcCCcEEEEEccCcCC
Q 014460 173 KQHERVLYVDIDIHHG 188 (424)
Q Consensus 173 ~~~~RVlivD~DvHHG 188 (424)
+..+||++||.|....
T Consensus 44 ~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 44 QAGYKTLLIDGDMRNS 59 (204)
T ss_pred hCCCeEEEEeCCCCCh
Confidence 4468999999998754
No 24
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=54.68 E-value=19 Score=37.71 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014460 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 245 yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
|...|++.+ |-+++|+=..+||=.|-.+..++- + ..+..-+..++..+.++++|.|||+..+
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~-----~--~~~~~~i~~l~~~g~~~vlVHGgg~~i~ 62 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGN-----L--GNIVADIALLHSLGVRLVLVHGARPQIE 62 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCcc-----H--HHHHHHHHHHHHCCCcEEEEcCCCHHHH
Confidence 455676664 678899999999999977775431 1 2345555667777889999999996653
No 25
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=54.41 E-value=39 Score=28.78 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
..+..+.+.++||+|.+|+= ..+.....++++.+|+.+..+.++.||.+
T Consensus 29 ~~~~~~~~~~~pdiv~~S~~------------~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 29 DIVEDIKELLKPDVVGISLM------------TSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHhcCCCEEEEeec------------cccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 44444444489999999841 11223455677888876544555544443
No 26
>PRK05279 N-acetylglutamate synthase; Validated
Probab=53.82 E-value=36 Score=35.82 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCch
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 315 (424)
+|...|++.+ |-+.+|+=..+||-.|-.+...+ ++ +.+..-+..+...+.++++|.|||.....
T Consensus 8 ~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 8 EFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred HHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 5788888775 66788988899999998887543 12 23444455566678899999999987643
No 27
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=53.08 E-value=12 Score=32.38 Aligned_cols=72 Identities=14% Similarity=0.260 Sum_probs=37.1
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~~~~pvl~l 306 (424)
..|.-. .|.+-..++..+...+.+ +...+||+|||+.|..=.... .....+.+.|. ++++.++..+ +++++
T Consensus 33 ~~n~~~-~G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~ 107 (179)
T PF13472_consen 33 VYNLGV-SGATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILV 107 (179)
T ss_dssp EEEEE--TT-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEee-cCccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEe
Confidence 344444 334444566666665555 588999999999996332221 12333344443 3444444444 76666
Q ss_pred e
Q 014460 307 G 307 (424)
Q Consensus 307 l 307 (424)
.
T Consensus 108 ~ 108 (179)
T PF13472_consen 108 S 108 (179)
T ss_dssp E
T ss_pred c
Confidence 4
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=52.85 E-value=61 Score=29.73 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc---CCCEEEEeC
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGG 308 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~---~~pvl~lle 308 (424)
.++...+|+.++.. +.+.+||+||+ +| |.... ...+...+..+.+.++++ +.|+.++.|
T Consensus 23 ~~~~~~~~~~~~~~-~~~~~~d~i~~-~G-D~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVEL-AIEEKVDFVLI-AG-DLFDS-----NNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHHH-HHhcCCCEEEE-CC-cccCC-----CCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 35677888887754 56679998765 33 44332 233444455555555554 788887753
No 29
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=52.34 E-value=46 Score=30.09 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=29.1
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCCC--ccc-C---HHhH----HHHHHHHHhcCCCEEEE
Q 014460 254 GKVMEVFRPGAVVLQCGADSLSGDRLGC--FNL-S---IKGH----AECVKFMRSFNVPLLLL 306 (424)
Q Consensus 254 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~--~~l-t---~~g~----~~~~~~l~~~~~pvl~l 306 (424)
...+.+.+||+|++..|..=......+. ... + .+.| ..+++.++..+.+++++
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili 114 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWV 114 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 3445678999999999985433211110 000 0 1333 34555556557777766
No 30
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=52.15 E-value=55 Score=34.79 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc-----CCCEEEEeCCCCCCchhhhhHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF-----NVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~~a~~~~ 321 (424)
.+++.|..+.++|+|++|+|..++ -...||- +..+++.++.. +.|++.+--.||.. +....|.
T Consensus 79 ~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~~ 147 (455)
T PRK14476 79 NVEEAILNICKKAKPKIIGLCTTGLTETRGDD----------VAGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGWA 147 (455)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcchHhhhhcc----------HHHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHHH
Confidence 445556667788999998766554 6677774 23355555432 68999999999976 3455554
Q ss_pred HHHhhhh
Q 014460 322 YETGVAL 328 (424)
Q Consensus 322 ~~~~~l~ 328 (424)
.....++
T Consensus 148 ~a~~al~ 154 (455)
T PRK14476 148 AAVEAIV 154 (455)
T ss_pred HHHHHHH
Confidence 4443333
No 31
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=51.01 E-value=62 Score=28.59 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=37.6
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~l 306 (424)
.+|......+ -..++..+ .+.+..++||+|+|..|..=..... ...-..+.|.++++.+++. +.+++++
T Consensus 26 v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5666664433 33444444 2334568999999999985432211 1122234455566666653 4455554
No 32
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=50.46 E-value=30 Score=37.28 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCch
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRN 315 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~ 315 (424)
.+++.|..+.++|+|++|+|...+ -...||.++. +++.+..-+.|++.+--.||....
T Consensus 72 ~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~----------~~~~~~~~~~pvi~v~t~gf~g~~ 130 (511)
T TIGR01278 72 RLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGN----------LAAAAGLDKSKVIVADVNAYRRKE 130 (511)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHH----------HHHHhccCCCcEEEecCCCcccch
Confidence 555667778889999998888776 6677775443 344443236899999888888753
No 33
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=50.03 E-value=88 Score=25.95 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=34.0
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC--CEEEEeC
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV--PLLLLGG 308 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~--pvl~lle 308 (424)
.+|+|+.. +...+..++.. +...+.+.||+.|+..... +.....++.+.+++.+. .-+.+++
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~r---------s~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQGR---------GPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCcc---------cHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 68998853 21222222222 2234567788888743221 22333344444544452 3466779
Q ss_pred CCCCC
Q 014460 309 GGYTI 313 (424)
Q Consensus 309 GGY~~ 313 (424)
|||+.
T Consensus 106 GG~~~ 110 (113)
T cd01443 106 GGIKA 110 (113)
T ss_pred Chhhh
Confidence 99863
No 34
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.86 E-value=39 Score=31.07 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCC--CcccCHH----hHHHHHHHHHhcCCCEEE
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLG--CFNLSIK----GHAECVKFMRSFNVPLLL 305 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg--~~~lt~~----g~~~~~~~l~~~~~pvl~ 305 (424)
..+..|... ++..-+|++|+|..|..=......+ .-.++.+ .+..+++.+++.+.++++
T Consensus 60 ~~l~r~~~~---v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil 124 (204)
T cd01830 60 SALARFDRD---VLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIG 124 (204)
T ss_pred HHHHHHHHH---HhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 444445433 3344479999999998643221100 0123444 445566667766666654
No 35
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=49.38 E-value=61 Score=30.13 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=42.9
Q ss_pred cEEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEe
Q 014460 230 YSLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307 (424)
Q Consensus 230 ~~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~ll 307 (424)
|.||+ +.+..+.-+.+..+.+. -|+||| |-+|-|.|..+.|.+.++.+...+.|+++++
T Consensus 79 Y~V~v--------~~le~i~~~al~rA~~~--aDvIII---------DEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 79 YGVNV--------EGLEEIAIPALRRALEE--ADVIII---------DEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EEeeH--------HHHHHHhHHHHHHHhhc--CCEEEE---------ecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 67877 23333444444443332 588886 8899999999999999999998899988775
No 36
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=49.31 E-value=41 Score=30.04 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=26.6
Q ss_pred CCcEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHh--cCCCEEEE
Q 014460 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRS--FNVPLLLL 306 (424)
Q Consensus 261 ~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~--~~~pvl~l 306 (424)
+||+|||+.|..=.....- .-..+.+.|. .+++.+++ .+.+++++
T Consensus 63 ~pd~vii~~G~ND~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQ-PQHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred CceEEEEEecCccccCCCC-CCcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 8999999999864432210 0124455444 45666665 35666665
No 37
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=49.06 E-value=43 Score=33.50 Aligned_cols=59 Identities=27% Similarity=0.398 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccC----HHhHHHHHHHHHhc--CCCEEEEeCCC
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLS----IKGHAECVKFMRSF--NVPLLLLGGGG 310 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt----~~g~~~~~~~l~~~--~~pvl~lleGG 310 (424)
..|..++++++||++|+ .|-|+...+.-...+|. .+-|-+.++.++++ +.-=|++..|.
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGA 208 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGA 208 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 45667889999998765 89999877652222332 23344566777765 33445555664
No 38
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=47.31 E-value=54 Score=28.42 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=24.4
Q ss_pred HHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc
Q 014460 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299 (424)
Q Consensus 256 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~ 299 (424)
.+..++||+|+|+.|..=...- -...-..+.|..+++.+++.
T Consensus 35 ~~~~~~pd~vvi~~G~ND~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 35 WVLAAKPDVVLLHLGTNDLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred ccccCCCCEEEEeccCcccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 4456899999999998533221 01111233444566666665
No 39
>PRK13236 nitrogenase reductase; Reviewed
Probab=47.26 E-value=20 Score=35.61 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=17.7
Q ss_pred hcCCcEEEEEccCcCCcccccccc
Q 014460 173 KQHERVLYVDIDIHHGDGVEEAFY 196 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~F~ 196 (424)
+..+||++||.|.+++| |.-+|.
T Consensus 32 ~~G~rVLliD~D~q~~~-~~~l~~ 54 (296)
T PRK13236 32 EMGQRILIVGCDPKADS-TRLMLH 54 (296)
T ss_pred HCCCcEEEEEccCCCCc-cchhcc
Confidence 34699999999999987 554443
No 40
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=47.10 E-value=28 Score=32.36 Aligned_cols=44 Identities=27% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhc--CCCEEEE
Q 014460 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~--~~pvl~l 306 (424)
+..++|++|||.+|..=... . .+.+ .+.++++.+++. +.+++++
T Consensus 85 l~~~~pd~VvI~~G~ND~~~----~--~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 85 LDGVNPKVVVLLIGTNNIGH----T--TTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred ccCCCCCEEEEEecccccCC----C--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 44679999999999864421 1 1444 444566666654 4455554
No 41
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=46.75 E-value=22 Score=33.57 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.6
Q ss_pred hcCCcEEEEEccCcCCc
Q 014460 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||+|.++||
T Consensus 27 ~~g~~VlliD~D~~~~~ 43 (251)
T TIGR01969 27 KLGKKVLALDADITMAN 43 (251)
T ss_pred HCCCeEEEEeCCCCCcc
Confidence 45689999999998887
No 42
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.74 E-value=76 Score=33.26 Aligned_cols=72 Identities=14% Similarity=0.238 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhhhHHHHH
Q 014460 247 YLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYET 324 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~a~~~~~~~ 324 (424)
..+.+.|..+.++++|++|+|...+ ....||- +..+++.++ +.+.||+.+--.||...+....+....
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~ 144 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGDD----------VESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAF 144 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHH
Confidence 3556667778889999988776654 3344443 334666554 468999999999998855555554444
Q ss_pred hhhh
Q 014460 325 GVAL 328 (424)
Q Consensus 325 ~~l~ 328 (424)
..++
T Consensus 145 ~al~ 148 (426)
T cd01972 145 HGIL 148 (426)
T ss_pred HHHH
Confidence 4444
No 43
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.00 E-value=46 Score=29.80 Aligned_cols=48 Identities=17% Similarity=0.399 Sum_probs=29.8
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEE
Q 014460 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLL 306 (424)
Q Consensus 254 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~l 306 (424)
..++...+||+||+..|..=...+ .-..+.+..+++.+++. +.|++++
T Consensus 50 ~~~~~~~~pd~vii~~G~ND~~~~-----~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 50 AELLRDVPADLYIIDCGPNIVGAE-----AMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHhcCCCEEEEEeccCCCccH-----HHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 344566899999999998733221 11234555677777764 3566655
No 44
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=45.64 E-value=70 Score=31.41 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=45.6
Q ss_pred ccccccccCCCeEEEecCCCCCCCCC-CCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHHHHHHh---cCCcEE
Q 014460 190 GVEEAFYTTDRVMTVSFHKFGDYFPG-TGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEV---FRPGAV 265 (424)
Q Consensus 190 Gtq~~F~~d~~Vl~iSiH~~~~fyPg-tG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~p~~~~---f~PdlI 265 (424)
+-..||+-|.|+.=++ |.+.+|=+. .+.++.+-.-...-|.+|-.|.. +.++-...++..+...+.. =..|++
T Consensus 70 ~kW~if~~DER~Vp~~-~~dSNyg~~~~~~l~~v~~~~~~i~~id~~L~~--~~~~~a~~ye~~l~~~v~~~s~p~FDL~ 146 (252)
T KOG3147|consen 70 SKWHIFFVDERVVPLD-DPDSNYGLAKRHFLSKVPIPHYNIYPIDESLIA--DAEEAADLYEKELKALVANDSFPVFDLL 146 (252)
T ss_pred cceEEEEEeccccCCC-CCcccHHHHHHhhhhhCCCCcCcEEECChhhcc--CHHHHHHHHHHHHHHHhccCCCcceeEE
Confidence 7778999999988776 333221010 12222222211234566666654 2222223333344444433 235999
Q ss_pred EEecCCCCCCCC
Q 014460 266 VLQCGADSLSGD 277 (424)
Q Consensus 266 vvsaG~D~~~~D 277 (424)
++-||-|+|.--
T Consensus 147 LLG~GpDGHtaS 158 (252)
T KOG3147|consen 147 LLGMGPDGHTAS 158 (252)
T ss_pred EeccCCCCCeee
Confidence 999999999654
No 45
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=45.36 E-value=72 Score=33.63 Aligned_cols=69 Identities=12% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCchhhhhHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~-----~~~pvl~lleGGY~~~~~a~~~~ 321 (424)
.+++.|..+.++|+|++|+|...+ ....||-+ ..+++.++. .+.|++.+--.||.. +....|.
T Consensus 78 ~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~~ 146 (432)
T TIGR01285 78 HIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGYA 146 (432)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHHH
Confidence 455666677889999988776554 44666643 335555543 378999999999986 3344444
Q ss_pred HHHhhh
Q 014460 322 YETGVA 327 (424)
Q Consensus 322 ~~~~~l 327 (424)
.....+
T Consensus 147 ~a~~al 152 (432)
T TIGR01285 147 AAVESI 152 (432)
T ss_pred HHHHHH
Confidence 333333
No 46
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=44.91 E-value=81 Score=32.42 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhc---CCCEEEEeCCCCCCchhhh
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF---NVPLLLLGGGGYTIRNVAR 318 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~---~~pvl~lleGGY~~~~~a~ 318 (424)
-+++..+|..++. ++.+-++|+||++ ||=+=..+.+++.-....+.++++ ++|++++ .| |.+..++
T Consensus 22 ~~d~~~~f~~~l~-~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I-~G--NHD~~~~ 90 (390)
T COG0420 22 LEDQKKAFDELLE-IAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI-AG--NHDSPSR 90 (390)
T ss_pred hHHHHHHHHHHHH-HHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe-cC--CCCchhc
Confidence 4678888988876 5667799999864 576666778888777776666654 6899887 45 5554443
No 47
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=44.23 E-value=52 Score=35.15 Aligned_cols=55 Identities=9% Similarity=0.152 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCC-CCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCC
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYT 312 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~D~-~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~ 312 (424)
-+++++..++++|+|++|||..++=+ ..+|- ...+.+.+. +.++||+.+-..|+.
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~t~iIGdD----------le~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCTTEIIKMD----------LEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcHHhhccC----------HHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 45567778899999999999988643 22332 223555554 569999999999997
No 48
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=44.17 E-value=56 Score=35.37 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCC-CCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchh
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNV 316 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~D~-~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~ 316 (424)
.+.+.|..+.++|+|++|+|..++=+ ..|| +...+++.++ ..+.||+.+--.||.....
T Consensus 72 kL~~~I~~~~~~~~P~~I~V~tTC~~eiIGD----------Di~~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 72 KVVDNITRKDKEERPDLIVLTPTCTSSILQE----------DLQNFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCchhhhhc----------CHHHHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 45555667788999999999887543 3333 2334555554 3588999999999997554
No 49
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=42.75 E-value=98 Score=32.47 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-CCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQC-GADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsa-G~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~ 316 (424)
-+++.|..+.++|+|++|+|.. ......||. +..+++.+++.+.|++.+--.||.....
T Consensus 73 kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v~~~~~~~~~~vi~v~t~gf~g~~~ 132 (427)
T cd01971 73 RLRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAVVSEFQEGGAPIVYLETGGFKGNNY 132 (427)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHHHHHhhhcCCCEEEEECCCcCcccc
Confidence 4455566778889999776654 445555554 3335555566688999998899987543
No 50
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=41.33 E-value=10 Score=37.43 Aligned_cols=54 Identities=13% Similarity=0.313 Sum_probs=32.2
Q ss_pred HHHHHHhcCCcEEEEecCC---CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE
Q 014460 253 IGKVMEVFRPGAVVLQCGA---DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~l 306 (424)
+..++++++||+||..+|+ |....+|-..+.+...+-..+.+.++..+.+++.+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 4456678899999999986 34445665555665566667778888888888754
No 51
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=41.04 E-value=83 Score=25.56 Aligned_cols=56 Identities=25% Similarity=0.391 Sum_probs=33.2
Q ss_pred ecCCCCCCChHHHHHHHHHHHHHHHHhcCC-cEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 014460 233 NVPLDDGIDDESYHYLFKPIIGKVMEVFRP-GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (424)
Q Consensus 233 NvPL~~g~~D~~yl~~~~~iv~p~~~~f~P-dlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lle 308 (424)
=|-+|+|++|.- +.+++. ... .+|+|..-. .++...-.+.+.++++.+.|++-+.|
T Consensus 5 iiD~PPGTgD~~-l~~~~~--------~~~~g~ivVTTPq-----------~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 5 IIDLPPGTGDEH-LTLMQY--------LPIDGAIVVTTPQ-----------ELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EEE--SCSSSHH-HHHHHH--------H--SEEEEEE-CC-----------C--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EEeCCCCCCcHH-HHHHHh--------CCCCeEEEEeCCH-----------HHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 356799999854 333332 223 477777653 35666677889999999999997755
No 52
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=40.56 E-value=3.7e+02 Score=28.20 Aligned_cols=120 Identities=22% Similarity=0.268 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCcEEEEEccCcCCc----ccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCC-CCCC
Q 014460 166 LAILELLKQHERVLYVDIDIHHGD----GVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPL-DDGI 240 (424)
Q Consensus 166 iaa~~ll~~~~RVlivD~DvHHGd----Gtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL-~~g~ 240 (424)
+...|+.|..+|.++||+|+-+|- |+-.++.-+. .+. |-.|+ ..-..-..|.-+ .+..
T Consensus 122 ~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~---~~D--------~~eGf------~l~~pLV~~FG~~sp~~ 184 (415)
T KOG2749|consen 122 ILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEM---PLD--------VIEGF------SLTAPLVYNFGLTSPST 184 (415)
T ss_pred HHHHHHHHcCCcceEEEcCCCCCceecccchhheeccc---ccc--------hhhCc------ccCCceeeeccCCCCCc
Confidence 456788888999999999998772 4444432211 000 00011 011122445555 3566
Q ss_pred ChHHHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCC
Q 014460 241 DDESYHYLFKPIIGKVMEVF--RPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGG 309 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f--~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleG 309 (424)
+-+-|...+.++-.-+-+++ +|+.=+=-|=. |-.| |.. .+||..+...++.++.-+++|++-
T Consensus 185 N~~LY~~~~s~La~v~~~~~~~n~~ar~sG~iI-----nT~g-~i~-~egy~~llhai~~f~v~vviVLg~ 248 (415)
T KOG2749|consen 185 NLELYKALVSELAEVLKQRLSLNPEARVSGCII-----NTCG-WIE-GEGYAALLHAIKAFEVDVVIVLGQ 248 (415)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCchhcccceEE-----eccc-eec-cccHHHHHHHHHHcCccEEEEecc
Confidence 66778777776555555555 34331111111 1112 434 789999999999999988888753
No 53
>PRK04531 acetylglutamate kinase; Provisional
Probab=39.83 E-value=45 Score=34.92 Aligned_cols=53 Identities=15% Similarity=0.380 Sum_probs=40.0
Q ss_pred HHHHHhcCC----cEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014460 254 GKVMEVFRP----GAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 254 ~p~~~~f~P----dlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
.+-++.|+- ..+||-.|-.+... + .+.+...+.+|.+.+.++++|.|||...+
T Consensus 24 ~~~l~~F~~~~~~~~~VIKiGG~~l~~-~-------~~~l~~dla~L~~~G~~~VlVHGggpqI~ 80 (398)
T PRK04531 24 SQYLKRFSQLDAERFAVIKVGGAVLRD-D-------LEALASSLSFLQEVGLTPIVVHGAGPQLD 80 (398)
T ss_pred HHHHHHHhCcCCCcEEEEEEChHHhhc-C-------HHHHHHHHHHHHHCCCcEEEEECCCHHHH
Confidence 345566664 88999999887763 2 25677788888888999999999998654
No 54
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=39.63 E-value=1.3e+02 Score=31.65 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCC-CCCCCCCCcccCHHhHHHHHHHHHhc-----CCCEEEEeCCCCCCchhhhhHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGADS-LSGDRLGCFNLSIKGHAECVKFMRSF-----NVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~D~-~~~Dplg~~~lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~~a~~~~ 321 (424)
.+++.|..+.++|+|++|+|..++=+ ..||- ...+++.++.. +.|++.+--.||... ....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGdD----------i~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~~ 136 (417)
T cd01966 68 NLEEALDTLAERAKPKVIGLLSTGLTETRGED----------IAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGWA 136 (417)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcccccccC----------HHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHHH
Confidence 34455666778899998887766432 33332 33355555432 789999999999874 455554
Q ss_pred HHHhhhh
Q 014460 322 YETGVAL 328 (424)
Q Consensus 322 ~~~~~l~ 328 (424)
.....++
T Consensus 137 ~a~~al~ 143 (417)
T cd01966 137 AAVEAII 143 (417)
T ss_pred HHHHHHH
Confidence 4444443
No 55
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=39.24 E-value=1e+02 Score=28.23 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=36.7
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCCCEEEE
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~pvl~l 306 (424)
.+|.-+...+. ...+..|.. .+..++||+|||..|..=. .. .++.+ .+..+++.+++.+..++++
T Consensus 46 v~N~Gi~G~tt-~~~~~rl~~----~l~~~~pd~Vii~~GtND~----~~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 46 VVNASISGDTS-QQGLARLPA----LLKQHQPRWVLVELGGNDG----LR--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred EEecCcCcccH-HHHHHHHHH----HHHhcCCCEEEEEeccCcC----cc--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 45555443332 233444443 4456799999999997543 22 24554 4445666666655555544
No 56
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=38.75 E-value=1.3e+02 Score=31.06 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhhhHHHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYE 323 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~a~~~~~~ 323 (424)
.+++.|..+.++++|++|+|..+ .....||. +..+++.++ +.+.|++.+--.||...+....|...
T Consensus 74 ~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a 141 (406)
T cd01967 74 KLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIA 141 (406)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHH
Confidence 55666777888999997766544 44555553 334555554 35789999998988774544444433
No 57
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.55 E-value=69 Score=33.49 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCc
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~ 314 (424)
.+++.|..+.++|+|++|+|... .....||.+ ..+++.++ +.+.|++.+--.||...
T Consensus 72 kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 72 KVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHhhhccCCCeEEecCCCccch
Confidence 44455666778899998877766 566666643 33555454 35889999988999864
No 58
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=37.03 E-value=1.3e+02 Score=28.85 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
+++.++. .+++-+||+||+. || +..+....+.+..+++.+.+++.|+++|. |--+
T Consensus 19 ~le~l~~-~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~-GNhD 73 (224)
T cd07388 19 ALEKLVG-LAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVP-GPQD 73 (224)
T ss_pred HHHHHHH-HHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEc-CCCC
Confidence 4444443 4555689988753 34 33334456778888888888888998875 5333
No 59
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=36.95 E-value=2.6e+02 Score=27.43 Aligned_cols=88 Identities=11% Similarity=0.195 Sum_probs=48.9
Q ss_pred EEecCCCCCCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEE--Ee
Q 014460 231 SLNVPLDDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL--LG 307 (424)
Q Consensus 231 ~vNvPL~~g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-~~~pvl~--ll 307 (424)
-|++--....+-+++..+++. +.+.-+++++++.||+-++..-+.-..+| . .+..+++ ++.||++ --
T Consensus 134 PVilk~G~~~t~~e~~~Ave~----i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl--~----~i~~lk~~~~~pV~~ds~H 203 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEY----ILSSGNGNVILCERGIRTFEKATRNTLDL--S----AVPVLKKETHLPIIVDPSH 203 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHH----HHHcCCCcEEEEECCCCCCCCCCcCCcCH--H----HHHHHHHhhCCCEEEcCCC
Confidence 344433333345677766654 34556789999999997663212223344 2 4455555 5889887 34
Q ss_pred CCCCCCchhhhhHHHHHhhhhCCC
Q 014460 308 GGGYTIRNVARCWCYETGVALGVE 331 (424)
Q Consensus 308 eGGY~~~~~a~~~~~~~~~l~g~~ 331 (424)
.+|+..-..+-+. +++.+|..
T Consensus 204 s~G~r~~~~~~~~---aAva~Ga~ 224 (260)
T TIGR01361 204 AAGRRDLVIPLAK---AAIAAGAD 224 (260)
T ss_pred CCCccchHHHHHH---HHHHcCCC
Confidence 5665443333333 35566653
No 60
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=36.89 E-value=1.3e+02 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh
Q 014460 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS 298 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~ 298 (424)
.+...+|++++. ++.+.+||+||++ ||=+-.-.-|.+...++.+.|++
T Consensus 25 ~D~~~~f~eil~-~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 25 DDSWNTFEEVLQ-IAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhHHHHHHHHHH-HHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 567788988876 4567899999864 45444445566666777666664
No 61
>PLN02825 amino-acid N-acetyltransferase
Probab=36.73 E-value=70 Score=34.73 Aligned_cols=62 Identities=11% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014460 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 245 yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
|...|++.. |-+.+|+=..+||-.|-.+...+ . ...+..-+.+|.+.++++++|.|||...+
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~---~----~~~l~~DialL~~lGi~~VlVHGggpqI~ 62 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP---H----LDNILQDISLLHGLGIKFVLVPGTHVQID 62 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc---h----HHHHHHHHHHHHHCCCCEEEEcCCCHHHH
Confidence 345676654 77899999999999998887633 1 13344556677888999999999998654
No 62
>CHL00175 minD septum-site determining protein; Validated
Probab=36.14 E-value=39 Score=32.86 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.8
Q ss_pred hcCCcEEEEEccCcCCccc
Q 014460 173 KQHERVLYVDIDIHHGDGV 191 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGt 191 (424)
+..+||++||.|.++||-+
T Consensus 42 ~~g~~vlliD~D~~~~~l~ 60 (281)
T CHL00175 42 RLGYRVALIDADIGLRNLD 60 (281)
T ss_pred hCCCeEEEEeCCCCCCChh
Confidence 4568999999999998844
No 63
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.94 E-value=1.2e+02 Score=25.56 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=30.8
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh--cCCCEEEEe
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS--FNVPLLLLG 307 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~--~~~pvl~ll 307 (424)
.....++||+||++.|..=....+..........+.++++.+++ .+.+++++.
T Consensus 59 ~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~ 113 (187)
T cd00229 59 LALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILIT 113 (187)
T ss_pred hhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 45567899999999986533221101122333445556676664 356666664
No 64
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=35.90 E-value=1.8e+02 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC-CCC
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG-GGY 311 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lle-GGY 311 (424)
.+++.|..+.++|+|++|+|..++ -...||- ...+++.. ..+.|++.+=- ||+
T Consensus 62 KL~eaI~ea~e~y~P~lI~VvTTCvseIIGDD----------IeaVvkE~-~~giPVI~V~t~GGf 116 (352)
T TIGR03282 62 KLVKVIRYAEEKFKPELIGVVGTCASMIIGED----------LKEAVDEA-DVDAEVIAVEVHAGF 116 (352)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCchhhccCC----------HHHHHHHh-CCCCCEEEEECCCCC
Confidence 455667778899999988877664 3344443 23344433 45889999965 888
No 65
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=35.12 E-value=1.2e+02 Score=31.68 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCcEEEE-ecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-----cCCCEEEEeCCCCCCchhhhhHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVL-QCGADSLSGDRLGCFNLSIKGHAECVKFMRS-----FNVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvv-saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-----~~~pvl~lleGGY~~~~~a~~~~ 321 (424)
.+.+.|..+.++++|++|+| +.......||. +..+++.++. .+.|++.+--.||... ....|.
T Consensus 68 ~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~-~~~G~~ 136 (428)
T cd01965 68 NLIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKEFRAEGPEPADFPVVYASTPSFKGS-HETGYD 136 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHHHHhhccCCCCCeEEEeeCCCCCCc-HHHHHH
Confidence 44456667778899997655 44445566664 2335565653 5778888888888753 334443
Q ss_pred HH
Q 014460 322 YE 323 (424)
Q Consensus 322 ~~ 323 (424)
..
T Consensus 137 ~a 138 (428)
T cd01965 137 NA 138 (428)
T ss_pred HH
Confidence 33
No 66
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=35.00 E-value=21 Score=27.81 Aligned_cols=51 Identities=20% Similarity=0.449 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH----hHHHHHHHHHhcCC
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK----GHAECVKFMRSFNV 301 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~----g~~~~~~~l~~~~~ 301 (424)
+++..++++|+-++=|++++.|...+.|+|.|-+... ...+..+.|++.+.
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 5677889999999999999999999999999876553 34567777776553
No 67
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=34.68 E-value=49 Score=27.45 Aligned_cols=15 Identities=53% Similarity=0.930 Sum_probs=14.0
Q ss_pred CCcEEEEEccCcCCc
Q 014460 175 HERVLYVDIDIHHGD 189 (424)
Q Consensus 175 ~~RVlivD~DvHHGd 189 (424)
.++|++||.|.++++
T Consensus 29 ~~~~~l~d~d~~~~~ 43 (106)
T cd03111 29 GRRVLLVDLDLQFGD 43 (106)
T ss_pred CCcEEEEECCCCCCC
Confidence 789999999999987
No 68
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=34.46 E-value=1.1e+02 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=26.3
Q ss_pred CCcEEEEecCCCCCCCCCCCCcccCHHhHH----HHHHHHHhcCCCEEEE
Q 014460 261 RPGAVVLQCGADSLSGDRLGCFNLSIKGHA----ECVKFMRSFNVPLLLL 306 (424)
Q Consensus 261 ~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~----~~~~~l~~~~~pvl~l 306 (424)
+||+|||+.|..=..... .....+.+.|. ++++.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~-~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKD-PEYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCC-CCCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 799999999975433211 00123445554 4666666666665554
No 69
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=34.14 E-value=1.5e+02 Score=25.68 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=31.4
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014460 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
+...++|.||+.+| |+ +|...++.+++.|.+|++++-.+-.
T Consensus 95 ~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~ 135 (149)
T cd06167 95 AYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKT 135 (149)
T ss_pred hhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccC
Confidence 33448999999998 54 5677899999999999988766333
No 70
>PRK10818 cell division inhibitor MinD; Provisional
Probab=33.52 E-value=45 Score=32.16 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=14.9
Q ss_pred hcCCcEEEEEccCcCCcc
Q 014460 173 KQHERVLYVDIDIHHGDG 190 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdG 190 (424)
+..+||++||+|.+.||-
T Consensus 29 ~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 29 QKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred HCCCeEEEEECCCCCCCh
Confidence 446899999999988873
No 71
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=33.34 E-value=1.3e+02 Score=29.84 Aligned_cols=64 Identities=16% Similarity=0.316 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCc
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~ 314 (424)
.....|++.. |-+++|+=..+||-.|-++...+.+ .+.+.+-+.++...+.++++|.|||....
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~l------~~~~~~di~~l~~~g~~~VlVHGgg~~i~ 69 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLIL------KADIIKDILFLSCIGLKIVVVHGGGPEIN 69 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcch------HHHHHHHHHHHHHCCCcEEEEeCCcHHHH
Confidence 4566777764 6788999999999999777654321 12233445556678899999999998543
No 72
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=33.12 E-value=33 Score=30.82 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.7
Q ss_pred CcEEEEEccCcCCc
Q 014460 176 ERVLYVDIDIHHGD 189 (424)
Q Consensus 176 ~RVlivD~DvHHGd 189 (424)
+||++||.|.+.++
T Consensus 25 ~~vlliD~D~~~~~ 38 (179)
T cd03110 25 KNVVLADCDVDAPN 38 (179)
T ss_pred hCcEEEECCCCCCc
Confidence 69999999999876
No 73
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=32.59 E-value=1.3e+02 Score=25.10 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=22.6
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcC
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFN 300 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~ 300 (424)
..+.+.+||+|.+|+--+. +.....++++.+++.+
T Consensus 44 ~~~~~~~pdvV~iS~~~~~-----------~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLTT-----------HMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEeccccc-----------cHHHHHHHHHHHHHcC
Confidence 3456789999999875222 2233456777777764
No 74
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=31.56 E-value=1.9e+02 Score=30.18 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCcEEEEec
Q 014460 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQC 269 (424)
Q Consensus 239 g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsa 269 (424)
+.+++++++.=.++|...++.|+||++||-.
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3457888888889999999999999999864
No 75
>PF02701 zf-Dof: Dof domain, zinc finger; InterPro: IPR003851 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry consists of proteins containing a Dof domain, which is a zinc finger DNA-binding domain that shows resemblance to the Cys2 zinc finger, although it has a longer putative loop where an extra Cys residue is conserved []. AOBP, a DNA-binding protein in pumpkin (Cucurbita maxima), contains a 52 amino acid Dof domain, which is highly conserved in several DNA-binding proteins of higher plants. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent
Probab=31.08 E-value=18 Score=27.88 Aligned_cols=11 Identities=45% Similarity=0.990 Sum_probs=8.2
Q ss_pred ccceeechHHH
Q 014460 156 SGFCYVNDIVL 166 (424)
Q Consensus 156 ~GFC~~Ndvai 166 (424)
-=|||+||--+
T Consensus 16 TKFcYyNNy~~ 26 (63)
T PF02701_consen 16 TKFCYYNNYNL 26 (63)
T ss_pred CEEEeecCCCC
Confidence 46999998643
No 76
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=30.58 E-value=2.7e+02 Score=28.73 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=18.5
Q ss_pred chHHHHHHHHHhcC--CcEEEEEccCcCCccccc
Q 014460 162 NDIVLAILELLKQH--ERVLYVDIDIHHGDGVEE 193 (424)
Q Consensus 162 Ndvaiaa~~ll~~~--~RVlivD~DvHHGdGtq~ 193 (424)
.|++-+...+.+.. .||+ +|.=||||..+
T Consensus 239 ~di~~~~~~l~~~~lp~~vm---VD~SH~ns~k~ 269 (344)
T TIGR00034 239 ADVAAAKKQLEKAGLPPHLM---IDFSHGNSNKD 269 (344)
T ss_pred HHHHHHHHHHHHcCCCCeEE---EeCCCcccccc
Confidence 57776665555443 4455 37789998754
No 77
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=30.45 E-value=2.8e+02 Score=25.56 Aligned_cols=88 Identities=23% Similarity=0.331 Sum_probs=53.0
Q ss_pred cEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHHHHHHHHHHHHHH
Q 014460 177 RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKV 256 (424)
Q Consensus 177 RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~iv~p~ 256 (424)
|+|.+||-+.-..|-.+. ....|+.||+.... | ....+. ..+.+..+.+..|.. .
T Consensus 4 ~~l~fDIEt~~~~gfp~~--~~d~Ii~Is~~~~~------g----------~~~~~~---~~~~~E~~lL~~F~~----~ 58 (188)
T cd05781 4 KTLAFDIEVYSKYGTPNP--RRDPIIVISLATSN------G----------DVEFIL---AEGLDDRKIIREFVK----Y 58 (188)
T ss_pred eEEEEEEEecCCCCCCCC--CCCCEEEEEEEeCC------C----------CEEEEE---ecCCCHHHHHHHHHH----H
Confidence 799999988855553222 33689999986531 0 001111 224566777777765 4
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCE
Q 014460 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPL 303 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pv 303 (424)
+++++||+|+ |+.+..-| ..-+.+.++.+++++
T Consensus 59 i~~~dPd~i~---gyN~~~FD-----------lpyl~~Ra~~~gi~~ 91 (188)
T cd05781 59 VKEYDPDIIV---GYNSNAFD-----------WPYLVERARVLGVKL 91 (188)
T ss_pred HHHcCCCEEE---ecCCCcCc-----------HHHHHHHHHHhCCCc
Confidence 5679999987 54444333 345666666666654
No 78
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=29.92 E-value=1.3e+02 Score=28.03 Aligned_cols=36 Identities=6% Similarity=0.034 Sum_probs=26.2
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV 301 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~ 301 (424)
..+++.+||+|.+|+=... +.....++++.+++.+.
T Consensus 129 ~~~~~~~pd~v~lS~~~~~-----------~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMTT-----------TMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHcCCCEEEEcccccc-----------CHHHHHHHHHHHHHcCC
Confidence 4567899999999985433 34456778888887744
No 79
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=29.92 E-value=24 Score=40.54 Aligned_cols=42 Identities=29% Similarity=0.281 Sum_probs=23.6
Q ss_pred cCCCCCCccceeCCCCCCCCCccccCcCCCCCCC--CCCCCCccC
Q 014460 380 KLQHAPSVQFQERPPDSELPEADEDQEDGDERWD--PDSDMDVDD 422 (424)
Q Consensus 380 ~l~~~~sv~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 422 (424)
+.+.+-+..|.+|-.. .+.++++||+|.++++| |+.|+|+++
T Consensus 1385 ~dq~sT~~r~yEIGR~-r~~~dd~DeeeD~e~Ed~dEddd~edd~ 1428 (1516)
T KOG1832|consen 1385 MDQFSTSARMYEIGRR-RPTDDDSDEEEDDETEDEDEDDDEEDDL 1428 (1516)
T ss_pred hhhhhhhhhhhhhccc-CCCccccCccccchhhcccccccccccc
Confidence 3456667778887653 34455566666666644 444444433
No 80
>PLN02512 acetylglutamate kinase
Probab=29.56 E-value=1.5e+02 Score=29.81 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 014460 243 ESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~ 313 (424)
-.|...|++. .|-+.+|+=..+||=.|-+...+.. + .+.+.+-+..++..+.++++|.|||...
T Consensus 29 ~~~~~~~r~~-~pyi~~~~~~tiVIKlGGs~i~d~~-----~-~~~~~~di~~l~~~g~~iVlVHGgG~~i 92 (309)
T PLN02512 29 LSRVDILSEA-LPFIQRFRGKTVVVKYGGAAMKDPE-----L-KAGVIRDLVLLSCVGLRPVLVHGGGPEI 92 (309)
T ss_pred HHHHHHHHHH-hHHHHHHCCCeEEEEECCeeccChh-----H-HHHHHHHHHHHHHCCCCEEEEECCcHHH
Confidence 3778888886 4778999999999999877654322 1 1222233335667788899998998754
No 81
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=29.48 E-value=53 Score=31.90 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=14.3
Q ss_pred hcCCcEEEEEccCcCCc
Q 014460 173 KQHERVLYVDIDIHHGD 189 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGd 189 (424)
+..+||++||.|.+..+
T Consensus 27 ~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 27 TMGNKILLVGCDPKADS 43 (273)
T ss_pred hhCCCeEEEeccccccc
Confidence 45689999999999765
No 82
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=29.47 E-value=4e+02 Score=26.33 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=34.4
Q ss_pred HHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-c-CCCEEEEeCCCCCCchhhhhHHHHHhhhhC
Q 014460 257 MEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-F-NVPLLLLGGGGYTIRNVARCWCYETGVALG 329 (424)
Q Consensus 257 ~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-~-~~pvl~lleGGY~~~~~a~~~~~~~~~l~g 329 (424)
+.+-.+|.|+|+-=.-+..-| .+.++.+++ . ..|+ +++||=++.|+.+.+...-++.+|
T Consensus 167 ~~~~~aDavivtG~~TG~~~d------------~~~l~~vr~~~~~~Pv--llggGvt~eNv~e~l~~adGviVg 227 (257)
T TIGR00259 167 VERGLADAVILSGKTTGTEVD------------LELLKLAKETVKDTPV--LAGSGVNLENVEELLSIADGVIVA 227 (257)
T ss_pred HHhcCCCEEEECcCCCCCCCC------------HHHHHHHHhccCCCeE--EEECCCCHHHHHHHHhhCCEEEEC
Confidence 334459999986422222222 123444443 2 4564 568999999999998764344444
No 83
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=29.32 E-value=89 Score=29.13 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=28.6
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHH----HHHHHHhc--CCCEEEEeCCCCC
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE----CVKFMRSF--NVPLLLLGGGGYT 312 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~----~~~~l~~~--~~pvl~lleGGY~ 312 (424)
+...+.+.++|++++.||.. .|.+.|.+ +++.+++. ..||+++--=+|.
T Consensus 51 ~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~ 105 (178)
T PF14606_consen 51 VADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYP 105 (178)
T ss_dssp HHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----T
T ss_pred HHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcc
Confidence 44555667889999999976 45556654 45556654 6899988433333
No 84
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=29.27 E-value=51 Score=31.96 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=13.4
Q ss_pred cCCcEEEEEccCcCCc
Q 014460 174 QHERVLYVDIDIHHGD 189 (424)
Q Consensus 174 ~~~RVlivD~DvHHGd 189 (424)
..+|||+||+|.++.+
T Consensus 30 ~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 30 HDKKVFIHGCDPKADS 45 (275)
T ss_pred cCCeEEEeccCcCcCh
Confidence 4789999999998644
No 85
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=29.24 E-value=2.3e+02 Score=29.82 Aligned_cols=63 Identities=10% Similarity=0.159 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-CCCCCCCCCCCCcccCHHhHHHHHHHHHhc-----CCCEEEEeCCCCCCchhhhhHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQC-GADSLSGDRLGCFNLSIKGHAECVKFMRSF-----NVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsa-G~D~~~~Dplg~~~lt~~g~~~~~~~l~~~-----~~pvl~lleGGY~~~~~a~~~~ 321 (424)
.+++.|..+.++|+|++|+|.. ......||. +..+++.++.. +.|++.+--.||... ....|.
T Consensus 72 ~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs-~~~G~~ 140 (435)
T cd01974 72 NLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD----------LNAFIKNAKNKGSIPADFPVPFANTPSFVGS-HITGYD 140 (435)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc----------HHHHHHHHHHhccCCCCCeEEEecCCCCccC-HHHHHH
Confidence 4556667788899999766554 445555553 23355544432 578888877788753 334433
No 86
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=28.84 E-value=67 Score=28.33 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=16.0
Q ss_pred HHhcCCcEEEEEccCcCCccc
Q 014460 171 LLKQHERVLYVDIDIHHGDGV 191 (424)
Q Consensus 171 ll~~~~RVlivD~DvHHGdGt 191 (424)
+.++..||++||.|...|+-+
T Consensus 24 l~~~g~~vllvD~D~~~~~~~ 44 (179)
T cd02036 24 LAQLGYKVVLIDADLGLRNLD 44 (179)
T ss_pred HHhCCCeEEEEeCCCCCCCch
Confidence 335578999999999877643
No 87
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.81 E-value=2e+02 Score=29.73 Aligned_cols=70 Identities=9% Similarity=0.112 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhhhHHHHHh
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYETG 325 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~a~~~~~~~~ 325 (424)
-+++.|..+.++|+|++|+|... .-...||. +..+++.++ +.+.|++.+--.||.. +....|.....
T Consensus 74 ~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDD----------i~~v~~~~~~~~~~pvi~v~t~gf~g-~~~~G~~~~~~ 142 (396)
T cd01979 74 ELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMD----------LEGAAPRLSAEIGVPILVASASGLDY-TFTQGEDTVLA 142 (396)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCHHHHHhcC----------HHHHHHHHhhcCCCcEEEeeCCCccc-cHHHHHHHHHH
Confidence 35566777888999998877654 34444543 233445444 3478888888888864 33334444444
Q ss_pred hhh
Q 014460 326 VAL 328 (424)
Q Consensus 326 ~l~ 328 (424)
.++
T Consensus 143 alv 145 (396)
T cd01979 143 ALV 145 (396)
T ss_pred HHh
Confidence 344
No 88
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=28.79 E-value=2.2e+02 Score=28.15 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHh
Q 014460 246 HYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETG 325 (424)
Q Consensus 246 l~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~ 325 (424)
..+++..|..+.++|++|+||+.+= .--|++.||.+- .+.|.+.++-++..|--=|....+-......-.
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNgE------Naa~G~Git~~~----~~~L~~~GvDviT~GNH~wdkkei~~~i~~~~~ 81 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANGE------NAAGGFGITPKI----AEELFKAGVDVITMGNHIWDKKEIFDFIDKEPR 81 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-T------TTTTTSS--HHH----HHHHHHHT-SEEE--TTTTSSTTHHHHHHH-SS
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCc------ccCCCCCCCHHH----HHHHHhcCCCEEecCcccccCcHHHHHHhcCCC
Confidence 4577788888889999999997652 223678898774 445566788888887666666555443333222
Q ss_pred hhhCCCCCCCCCchhhhhhcCCCCcCcc----CCCCCCC-CCcHHHHHHHHHHH
Q 014460 326 VALGVEVDDKMPQHEYYEYFGPDYTLHV----APSNMEN-KNSRQLLEEIRNKL 374 (424)
Q Consensus 326 ~l~g~~~~~~~P~~~~~~~~~p~~~l~~----~~~~~~~-~n~~~~l~~i~~~~ 374 (424)
+|-=...|+..|-..|.-+-..+.++.+ ...-|+. .|.-..++++.+++
T Consensus 82 ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l 135 (253)
T PF13277_consen 82 ILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL 135 (253)
T ss_dssp EE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH-
T ss_pred cEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc
Confidence 2222233444443333221112222221 1222333 35556777776555
No 89
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=28.53 E-value=2.1e+02 Score=27.78 Aligned_cols=54 Identities=13% Similarity=0.185 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHh-cCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 014460 246 HYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (424)
Q Consensus 246 l~~~~~iv~p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lle 308 (424)
...|+.+|..+.+. -+||+||++ | |-.. .-+.+.|..+.+.+++++.|+.++.|
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-G-Dl~~-------~~~~~~~~~~~~~l~~l~~Pv~~v~G 93 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-G-DLAQ-------DHSSEAYQHFAEGIAPLRKPCVWLPG 93 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-C-CCCC-------CCCHHHHHHHHHHHhhcCCcEEEeCC
Confidence 44566666655443 479997754 2 3221 12457788888888888999887753
No 90
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.49 E-value=1.9e+02 Score=30.41 Aligned_cols=69 Identities=12% Similarity=0.141 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEe-cCCCCCCCCCCCCcccCHHhHHHHHHHHHh----cCCCEEEEeCCCCCCchhhhhHHH
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQ-CGADSLSGDRLGCFNLSIKGHAECVKFMRS----FNVPLLLLGGGGYTIRNVARCWCY 322 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvs-aG~D~~~~Dplg~~~lt~~g~~~~~~~l~~----~~~pvl~lleGGY~~~~~a~~~~~ 322 (424)
.+++.|..+.++|+|++|+|. +......||. +..+++.++. .+.|++.+--.||.. +....|..
T Consensus 71 kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~g-~~~~G~~~ 139 (429)
T cd03466 71 NLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYGG-THVEGYDT 139 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCcc-cHHHHHHH
Confidence 455666778888999976554 4445555653 2335555543 366788887788864 33344433
Q ss_pred HHhhh
Q 014460 323 ETGVA 327 (424)
Q Consensus 323 ~~~~l 327 (424)
....+
T Consensus 140 a~~al 144 (429)
T cd03466 140 AVRSI 144 (429)
T ss_pred HHHHH
Confidence 33333
No 91
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=28.05 E-value=2.5e+02 Score=29.25 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCC
Q 014460 247 YLFKPIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTI 313 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~ 313 (424)
..+++.|..+.++|+|++|+|...+ -...||. ...+++.++ +.+.||+.+---||..
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDD----------i~~v~~~~~~~~~~pVi~v~tpgf~g 128 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMD----------LEGLAERLSTNFGVPVLFAPASGLDY 128 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCchHHHHHhh----------HHHHHHHHHHhhCCCEEEeeCCCccc
Confidence 3556677778889999999887663 2233332 233444443 2477888888888865
No 92
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.67 E-value=67 Score=30.31 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=15.0
Q ss_pred HHhcCCcEEEEEccCcCCc
Q 014460 171 LLKQHERVLYVDIDIHHGD 189 (424)
Q Consensus 171 ll~~~~RVlivD~DvHHGd 189 (424)
|.+..+||++||.|...||
T Consensus 26 la~~g~~vlliD~D~~~~~ 44 (261)
T TIGR01968 26 LARLGKKVVLIDADIGLRN 44 (261)
T ss_pred HHHcCCeEEEEECCCCCCC
Confidence 3345689999999998776
No 93
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=27.66 E-value=2.7e+02 Score=28.88 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=22.0
Q ss_pred eechHHHHHHHHHhcC--CcEEEEEccCcCCccccc
Q 014460 160 YVNDIVLAILELLKQH--ERVLYVDIDIHHGDGVEE 193 (424)
Q Consensus 160 ~~Ndvaiaa~~ll~~~--~RVlivD~DvHHGdGtq~ 193 (424)
.-+++..++..+.+.. .+|+ +|.=|||+..+
T Consensus 244 ~~~~i~~a~~~l~k~~l~~~vm---VD~SH~Ns~K~ 276 (353)
T PRK12755 244 DAASVAACEAQLEKAGLRPRLM---IDCSHANSGKD 276 (353)
T ss_pred CHHHHHHHHHHHHHcCCCCcEE---ecCCccccccc
Confidence 3477888877776653 5665 48899998764
No 94
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.65 E-value=1.4e+02 Score=32.01 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=25.4
Q ss_pred HHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCC
Q 014460 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGG 310 (424)
Q Consensus 254 ~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGG 310 (424)
...+.+++||+|.+++ +..+...-.++++.+++....+.+|+||.
T Consensus 56 ~~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~ 100 (497)
T TIGR02026 56 VERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGI 100 (497)
T ss_pred HHHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 3456778999999974 11222333456677776533344444444
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=27.60 E-value=1.8e+02 Score=24.04 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=61.9
Q ss_pred HHHHHHHHhcCCcEEEEEccCcCCcccccccccCCCeEEEecCCCCCCCCCCCCCCcccCCCCCccEEecCCCCCCChHH
Q 014460 165 VLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKFYSLNVPLDDGIDDES 244 (424)
Q Consensus 165 aiaa~~ll~~~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~~~fyPgtG~~~e~G~g~g~g~~vNvPL~~g~~D~~ 244 (424)
.+.+.+|++..-.|-++|.+++..+-.+.+-...|+++.+|.+... .
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~---------------------------------~ 64 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTP---------------------------------N 64 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSST---------------------------------H
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcC---------------------------------c
Confidence 3444556665568999999998877777777789999999976321 1
Q ss_pred HHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEEEeCCCCCC
Q 014460 245 YHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLLLGGGGYTI 313 (424)
Q Consensus 245 yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-~~~pvl~lleGGY~~ 313 (424)
+. ...+++ ..+++..|+.+++.-|.-+ .. ....+ ++. .+.-.++.+||-+..
T Consensus 65 ~~-~~~~l~-~~~k~~~p~~~iv~GG~~~---------t~---~~~~~---l~~~~~~D~vv~GegE~~~ 117 (121)
T PF02310_consen 65 LP-EAKRLA-RAIKERNPNIPIVVGGPHA---------TA---DPEEI---LREYPGIDYVVRGEGEEAF 117 (121)
T ss_dssp HH-HHHHHH-HHHHTTCTTSEEEEEESSS---------GH---HHHHH---HHHHHTSEEEEEETTSSHH
T ss_pred HH-HHHHHH-HHHHhcCCCCEEEEECCch---------hc---ChHHH---hccCcCcceecCCChHHhh
Confidence 11 122333 3378899999999888322 11 11112 222 456788888886543
No 96
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=27.46 E-value=1.1e+02 Score=25.84 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCCC
Q 014460 247 YLFKPIIGKVMEVFRPGAVVLQCGADS 273 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG~D~ 273 (424)
..+.+.|..++++++|++|+.-...|.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 344455677889999999999888777
No 97
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=27.42 E-value=2.5e+02 Score=29.75 Aligned_cols=57 Identities=21% Similarity=0.326 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEec-CCCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCc
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQC-GADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIR 314 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsa-G~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~ 314 (424)
.+.+.|..+.++|+|++|+|.. ......||.+ ..+++.++ +.+.||+.+--.||...
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdDi----------~~v~~e~~~~~~~~vi~v~t~gf~g~ 166 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDDL----------EAVCKAAAEKTGIPVIPVDSEGFYGS 166 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCCH----------HHHHHHHHHHhCCCEEEEECCCCccc
Confidence 4455566777889999876654 4455555532 33555554 35899999999998663
No 98
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.17 E-value=3.8e+02 Score=26.42 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEE
Q 014460 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLL 305 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~-~~~pvl~ 305 (424)
+-++++.+.+. +...-+++++++.||+=+..+-|.-.+++ ..+..+++ ++.||++
T Consensus 146 s~~e~~~A~e~----i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl------~~i~~lk~~~~~pV~~ 201 (266)
T PRK13398 146 TLEEWLYAAEY----IMSEGNENVVLCERGIRTFETYTRNTLDL------AAVAVIKELSHLPIIV 201 (266)
T ss_pred CHHHHHHHHHH----HHhcCCCeEEEEECCCCCCCCCCHHHHHH------HHHHHHHhccCCCEEE
Confidence 34567766543 34567899999999975443333222233 24555655 4888776
No 99
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=26.98 E-value=66 Score=32.04 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~ 316 (424)
+...++++..++.||+.| ||..+.+-.+-+.++.+.+ +=++++||++...|+
T Consensus 105 i~~~~~~~~~evtiva~G-------PLTNlA~al~~~P~~~~~i-----k~iviMGG~~~~GN~ 156 (302)
T cd02651 105 IIDTLRASPEPITLVATG-------PLTNIALLLRKYPELAERI-----KEIVLMGGALGRGNI 156 (302)
T ss_pred HHHHHHhCCCCEEEEEcC-------chHHHHHHHHHChhhHhhc-----CEEEEecCCcCCCCC
Confidence 345667788899999999 8876655443334443333 346677777744443
No 100
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=26.94 E-value=2.2e+02 Score=30.31 Aligned_cols=69 Identities=7% Similarity=0.133 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhc-CCcEE-EEecCCCCCCCCCCCCcccCHHhHHHHHHHHHh---------cCCCEEEEeCCCCCCchhh
Q 014460 249 FKPIIGKVMEVF-RPGAV-VLQCGADSLSGDRLGCFNLSIKGHAECVKFMRS---------FNVPLLLLGGGGYTIRNVA 317 (424)
Q Consensus 249 ~~~iv~p~~~~f-~PdlI-vvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~---------~~~pvl~lleGGY~~~~~a 317 (424)
+++.|..+.++| +|++| |++++.....||-+ ..+++.+++ .+.|++.+--+||.. +..
T Consensus 80 L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~~ 148 (461)
T TIGR02931 80 VEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVG-SMI 148 (461)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cHH
Confidence 566777888889 59986 66677777777743 234444432 246788888888887 344
Q ss_pred hhHHHHHhhhh
Q 014460 318 RCWCYETGVAL 328 (424)
Q Consensus 318 ~~~~~~~~~l~ 328 (424)
..|...+..++
T Consensus 149 ~Gy~~a~~ali 159 (461)
T TIGR02931 149 TGYDVAVHDFV 159 (461)
T ss_pred HHHHHHHHHHH
Confidence 55544444444
No 101
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.57 E-value=2.1e+02 Score=25.20 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC-CEEEEeCCCC
Q 014460 256 VMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV-PLLLLGGGGY 311 (424)
Q Consensus 256 ~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~-pvl~lleGGY 311 (424)
.+.+.+||+|.+|+= +.-+.....++++.|++.+. .+.++.||+-
T Consensus 45 aa~~~~adiVglS~L-----------~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 45 AAIETDADAILVSSL-----------YGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHcCCCEEEEecc-----------ccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 456679999999851 22355566778888887754 3444445543
No 102
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=26.49 E-value=1.8e+02 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.383 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHHh-cCCCEEEEeCCCCCC
Q 014460 247 YLFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMRS-FNVPLLLLGGGGYTI 313 (424)
Q Consensus 247 ~~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~~-~~~pvl~lleGGY~~ 313 (424)
.-+++.|..+.++++|++|+|... .....|| ++..+++.++. .+.|++.+--.||..
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIGd----------D~~~v~~~~~~~~~~~vi~v~~~gf~~ 118 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIGD----------DIEAVARELQEEYGIPVIPVHTPGFSG 118 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTTT----------THHHHHHHHHHHHSSEEEEEE--TTSS
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhCC----------CHHHHHHHhhcccCCcEEEEECCCccC
Confidence 345566677788899999887654 2333333 34557777764 578999999999943
No 103
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=26.33 E-value=2.8e+02 Score=24.92 Aligned_cols=68 Identities=16% Similarity=0.069 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEec-------CCCCCCCCCCCC----cccCHHhHHHHHHHHHhcCCCEEEEeCC
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQC-------GADSLSGDRLGC----FNLSIKGHAECVKFMRSFNVPLLLLGGG 309 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsa-------G~D~~~~Dplg~----~~lt~~g~~~~~~~l~~~~~pvl~lleG 309 (424)
+...+..+.+.+..+-..-...+||+.. |.|...--.... ..--...+..+++.+..+.+|++.+..|
T Consensus 24 ~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 24 SLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 3466666777776655555667777754 333321100000 0001112234555666778999988753
No 104
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=26.23 E-value=1.1e+02 Score=30.74 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=47.6
Q ss_pred HHHHHHhcCCcEEEEecCC---CCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEE-------eCC--CCCCchhhh
Q 014460 253 IGKVMEVFRPGAVVLQCGA---DSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLL-------GGG--GYTIRNVAR 318 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~---D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~l-------leG--GY~~~~~a~ 318 (424)
+..++++.+||+||-.|.+ |....+|--.|.+...+=..+.+..++.+.+++-+ |.+ .|.......
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~~~ 119 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPN 119 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCCCC
Confidence 5567788899999999875 77777777677777777777888888888877633 444 377654433
No 105
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=25.67 E-value=2.3e+02 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHh-cCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEe
Q 014460 243 ESYHYLFKPIIGKVMEV-FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLG 307 (424)
Q Consensus 243 ~~yl~~~~~iv~p~~~~-f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~ll 307 (424)
......|+.++..+.+. -+||+||+. | |.... -+.+.|..+.+.+.++++|++++.
T Consensus 21 ~~~~~~l~~~~~~i~~~~~~~d~vi~~-G-Dl~~~-------~~~~~~~~~~~~l~~~~~p~~~v~ 77 (240)
T cd07402 21 VDTAASLEAVLAHINALHPRPDLVLVT-G-DLTDD-------GSPESYERLRELLAALPIPVYLLP 77 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCEEEEC-c-cCCCC-------CCHHHHHHHHHHHhhcCCCEEEeC
Confidence 34556677777654333 389977753 2 32211 134567777778888899988774
No 106
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.40 E-value=1.9e+02 Score=23.83 Aligned_cols=15 Identities=13% Similarity=-0.099 Sum_probs=11.7
Q ss_pred HHHhcCCcEEEEecC
Q 014460 256 VMEVFRPGAVVLQCG 270 (424)
Q Consensus 256 ~~~~f~PdlIvvsaG 270 (424)
.+.+.+||+|.+|+-
T Consensus 45 ~i~~~~pdiV~iS~~ 59 (125)
T cd02065 45 AAKEEDADVVGLSAL 59 (125)
T ss_pred HHHHcCCCEEEEecc
Confidence 344589999999884
No 107
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.28 E-value=3.1e+02 Score=26.50 Aligned_cols=63 Identities=10% Similarity=0.211 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH---hHHHHHHHHHhcC-CCEEEEeCCCCCCchhh
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK---GHAECVKFMRSFN-VPLLLLGGGGYTIRNVA 317 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~---g~~~~~~~l~~~~-~pvl~lleGGY~~~~~a 317 (424)
+....|+.++. .+.+.+||+||++ -|... ..+-+.. -+.+.++.|++.+ +|++++. | |.+...
T Consensus 23 ~~~~~l~~l~~-~~~~~~~D~lli~--GDi~d-----~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~-G--NHD~~~ 89 (253)
T TIGR00619 23 EQKAFLDDLLE-FAKAEQIDALLVA--GDVFD-----TANPPAEAQELFNAFFRNLSDANPIPIVVIS-G--NHDSAQ 89 (253)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEC--CccCC-----CCCCCHHHHHHHHHHHHHHHhcCCceEEEEc-c--CCCChh
Confidence 34556766654 5667799998864 23332 2222222 2344555565555 7888774 4 555433
No 108
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=25.26 E-value=69 Score=31.77 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=17.0
Q ss_pred HHhcCCcEEEEEccCcCCccccccc
Q 014460 171 LLKQHERVLYVDIDIHHGDGVEEAF 195 (424)
Q Consensus 171 ll~~~~RVlivD~DvHHGdGtq~~F 195 (424)
|.+..+|||+||.|.++.+ |.-.|
T Consensus 28 la~~g~kVLliD~D~q~~~-~~~~~ 51 (295)
T PRK13234 28 LVEMGQKILIVGCDPKADS-TRLIL 51 (295)
T ss_pred HHHCCCeEEEEeccccccc-ccccc
Confidence 3345789999999998655 44333
No 109
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.16 E-value=1.5e+02 Score=26.39 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=22.2
Q ss_pred hcCCcEEEEecCCCCCCCCCCCCcccCH----HhHHHHHHHHHhc
Q 014460 259 VFRPGAVVLQCGADSLSGDRLGCFNLSI----KGHAECVKFMRSF 299 (424)
Q Consensus 259 ~f~PdlIvvsaG~D~~~~Dplg~~~lt~----~g~~~~~~~l~~~ 299 (424)
.++||+|+|+.|..=.... ..-+. +.+..+++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~~----~~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKPQ----NWKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCCC----CCccHHHHHHHHHHHHHHHHHH
Confidence 4799999999997533221 11122 3455667766654
No 110
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=24.92 E-value=77 Score=31.58 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=14.2
Q ss_pred HhcCCcEEEEEccCcCCc
Q 014460 172 LKQHERVLYVDIDIHHGD 189 (424)
Q Consensus 172 l~~~~RVlivD~DvHHGd 189 (424)
.+..+||++||+|..+++
T Consensus 25 a~~g~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 25 AEMGKRVLQLGCDPKHDS 42 (296)
T ss_pred HHCCCeEEEEEecCCCCc
Confidence 345689999999998643
No 111
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=24.79 E-value=1.9e+02 Score=26.36 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=22.8
Q ss_pred hcCCcEEEEecCC-CCCCCCCCCCcccCHHhHH----HHHHHHHhc
Q 014460 259 VFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHA----ECVKFMRSF 299 (424)
Q Consensus 259 ~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~----~~~~~l~~~ 299 (424)
..+||+|||..|. |... .++.+.+.|. ++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 4432 2334555444 456666653
No 112
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=24.69 E-value=1.6e+02 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEe
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQ 268 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvs 268 (424)
.+.+.+..++.+++|++|+|+
T Consensus 50 ~~~~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 50 EDMERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp HHHHHHHHHHHHH--SEEEE-
T ss_pred HHHHHHHHHHHHcCCeEEEEc
Confidence 344445567788999999993
No 113
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=24.55 E-value=1.9e+02 Score=26.23 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=29.9
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCC
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYT 312 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~ 312 (424)
+...+++.+||+|+|..| +++.-..+.+.....+.++++-.||-.+
T Consensus 91 i~~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~~~vG~~~d 136 (171)
T cd06533 91 IIERINASGADILFVGLG--------------APKQELWIARHKDRLPVPVAIGVGGSFD 136 (171)
T ss_pred HHHHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEeceeeE
Confidence 345678899999999998 3444444445445556666665555454
No 114
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=24.44 E-value=2.8e+02 Score=27.43 Aligned_cols=61 Identities=13% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchh
Q 014460 246 HYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNV 316 (424)
Q Consensus 246 l~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~ 316 (424)
..++.+-+..+..+|++|+||+.+=. --|++.+|.+ ..+.+++.|.-++.+|.--|..+.+
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~EN------aa~G~Git~k----~y~~l~~~G~dviT~GNH~wd~~ei 75 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNGEN------AAGGFGITEK----IYKELLEAGADVITLGNHTWDQKEI 75 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcCcc------ccCCcCCCHH----HHHHHHHhCCCEEecccccccchHH
Confidence 34666778888899999999987642 3357888877 4555677888899887666665433
No 115
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=24.40 E-value=4.2e+02 Score=24.94 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhcCCCEEEEeCCCCCC
Q 014460 288 GHAECVKFMRSFNVPLLLLGGGGYTI 313 (424)
Q Consensus 288 g~~~~~~~l~~~~~pvl~lleGGY~~ 313 (424)
.|.++-+++.+.+.|+++|+|=|+.+
T Consensus 120 s~~~lr~~l~~~~~P~LllFGTGwGL 145 (185)
T PF09936_consen 120 SYAELRRMLEEEDRPVLLLFGTGWGL 145 (185)
T ss_dssp -HHHHHHHHHH--S-EEEEE--TT--
T ss_pred CHHHHHHHHhccCCeEEEEecCCCCC
Confidence 35566667767788999999988775
No 116
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=23.51 E-value=51 Score=26.60 Aligned_cols=51 Identities=18% Similarity=0.287 Sum_probs=40.6
Q ss_pred ecCCCCCCCCCCCC-cccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhh
Q 014460 268 QCGADSLSGDRLGC-FNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVAR 318 (424)
Q Consensus 268 saG~D~~~~Dplg~-~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~ 318 (424)
.++-+.+.|+.|+. +.+|-....+.++.|+..|.+|..+-.=||.+.....
T Consensus 14 ~~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ 65 (79)
T COG1654 14 LLTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPD 65 (79)
T ss_pred HcCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccc
Confidence 34555677777773 7899999999999999999999999777999865444
No 117
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=23.31 E-value=2.2e+02 Score=30.29 Aligned_cols=64 Identities=6% Similarity=0.083 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhc-CCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH--------hcCCCEEEEeCCCCCCchhh
Q 014460 248 LFKPIIGKVMEVF-RPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR--------SFNVPLLLLGGGGYTIRNVA 317 (424)
Q Consensus 248 ~~~~iv~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~--------~~~~pvl~lleGGY~~~~~a 317 (424)
.+++.|..+.++| +|++|+|..++ =...||-+ ..+++.++ ..+.|++.+-.+||.. +..
T Consensus 73 ~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi----------~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G-s~~ 141 (454)
T cd01973 73 RVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI----------EGVIRKLNEALKEEFPDREVHLIPVHTPSFKG-SMV 141 (454)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHhhhccCH----------HHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC-CHH
Confidence 3445566778889 59987776664 44555532 22444332 1267898898899986 333
Q ss_pred hhHHH
Q 014460 318 RCWCY 322 (424)
Q Consensus 318 ~~~~~ 322 (424)
..|..
T Consensus 142 ~G~~~ 146 (454)
T cd01973 142 TGYDE 146 (454)
T ss_pred HHHHH
Confidence 44433
No 118
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.23 E-value=2.4e+02 Score=27.01 Aligned_cols=97 Identities=23% Similarity=0.463 Sum_probs=58.0
Q ss_pred CCcEEEEEccCcCCcccccccccCCCeEEEecCCC-CCCCCCCCCCCc-ccCCCCCccEEecCCCCCCChHHHHHHHHHH
Q 014460 175 HERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKF-GDYFPGTGDIRD-IGYSKGKFYSLNVPLDDGIDDESYHYLFKPI 252 (424)
Q Consensus 175 ~~RVlivD~DvHHGdGtq~~F~~d~~Vl~iSiH~~-~~fyPgtG~~~e-~G~g~g~g~~vNvPL~~g~~D~~yl~~~~~i 252 (424)
+++|+|+-. .-.|+=|.++...+.+|..+.+|-+ ..|-|+.=...+ +-.-.|+ +.+=|-|- |+|. +
T Consensus 45 ~~~vli~G~-YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~Fr~~~~~~~G~-~DlivDlT-GlGG---------~ 112 (254)
T COG4017 45 FKEVLIFGV-YLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKFRNLLKFIRGE-VDLIVDLT-GLGG---------I 112 (254)
T ss_pred cceEEEEEe-eehhHHHHHHhcccceEEEecCCHHHHhcCCCCccHhhhcCCCCCc-eeEEEecc-ccCC---------C
Confidence 578888765 3458888888888889999999987 556665311110 0000122 23334332 2221 1
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCC-CcccCHHhHHH
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLG-CFNLSIKGHAE 291 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg-~~~lt~~g~~~ 291 (424)
-...+..|+|.+.|| .||-| .+..++.+|-.
T Consensus 113 ~Pe~L~~fnp~vfiV--------EdP~gn~~D~~I~eyn~ 144 (254)
T COG4017 113 EPEFLAKFNPKVFIV--------EDPKGNVFDVDIYEYNN 144 (254)
T ss_pred CHHHHhccCCceEEE--------ECCCCCCCccchhhcCC
Confidence 124567899999887 47777 45666666644
No 119
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=22.48 E-value=93 Score=27.93 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhcCCcEEE
Q 014460 244 SYHYLFKPIIGKVMEVFRPGAVV 266 (424)
Q Consensus 244 ~yl~~~~~iv~p~~~~f~PdlIv 266 (424)
.+...+.+-+.+.+++++||+||
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~II 94 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLII 94 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEE
Confidence 45566667778889999999988
No 120
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=22.48 E-value=70 Score=31.61 Aligned_cols=27 Identities=4% Similarity=-0.015 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEecC
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCG 270 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsaG 270 (424)
+......|++.+..+- .+-|+|||-|-
T Consensus 81 ~~~~~~~L~q~l~~l~--~~~DfLVID~P 107 (261)
T PF09140_consen 81 ENVEDKRLEQALADLE--GDLDFLVIDTP 107 (261)
T ss_dssp HHHHHHHHHHHHHHHH--HH-SEEEEEE-
T ss_pred cchhHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 3444567777776643 47899999875
No 121
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=22.46 E-value=6.6e+02 Score=25.97 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCC-CCCCCCcccCHHhHHHHHHHHHhc-CCCEEEEe--CCCCCCc
Q 014460 239 GIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLS-GDRLGCFNLSIKGHAECVKFMRSF-NVPLLLLG--GGGYTIR 314 (424)
Q Consensus 239 g~~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~-~Dplg~~~lt~~g~~~~~~~l~~~-~~pvl~ll--eGGY~~~ 314 (424)
..+-++++.+.+.+ ...-++++++..||+=++. +-|.-.++|. .+..+++. +.||++=- ..||.--
T Consensus 218 ~~t~ee~~~A~e~i----~~~Gn~~viL~erG~rtf~s~y~~~~~dl~------ai~~lk~~~~lPVi~DpsH~~G~sd~ 287 (352)
T PRK13396 218 AATIDEWLMAAEYI----LAAGNPNVILCERGIRTFDRQYTRNTLDLS------VIPVLRSLTHLPIMIDPSHGTGKSEY 287 (352)
T ss_pred CCCHHHHHHHHHHH----HHcCCCeEEEEecCCccCcCCCCCCCcCHH------HHHHHHHhhCCCEEECCcccCCcHHH
Confidence 33467888777654 4566889999999995553 2233334442 44555654 88987642 3476654
Q ss_pred hhhhhHHHHHhhhhCCC--CCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCC
Q 014460 315 NVARCWCYETGVALGVE--VDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQHAP 385 (424)
Q Consensus 315 ~~a~~~~~~~~~l~g~~--~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~l~~i~~~~~~~~~~l~~~~ 385 (424)
..+ ...+++.+|.+ +-+. ++-|+-.+ +.-+..=+++.++++.+.+.+-.+.+...|
T Consensus 288 ~~~---~a~AAva~GAdGliIE~--------H~~pd~Al----sD~~qsl~p~~~~~l~~~i~~i~~~~g~~~ 345 (352)
T PRK13396 288 VPS---MAMAAIAAGTDSLMIEV--------HPNPAKAL----SDGPQSLTPDRFDRLMQELAVIGKTVGRWP 345 (352)
T ss_pred HHH---HHHHHHhhCCCeEEEEe--------cCCcccCC----ChhhhcCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 333 33445566643 2110 11122111 122233356788888777777666655544
No 122
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=22.27 E-value=3.5e+02 Score=27.44 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCCchhhhhHHHHH
Q 014460 251 PIIGKVMEVFRPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTIRNVARCWCYET 324 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~~~~a~~~~~~~ 324 (424)
+.+..++++++|++|+|..++ ....||- +..+++.++ ..+.|++.+-..||. .+....+....
T Consensus 70 ~~i~~~~~~~~p~~i~v~~tc~~~liGdD----------i~~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~~a~ 134 (399)
T cd00316 70 EAIINELKRYKPKVIFVYTTCTTELIGDD----------IEAVAKEASKEIGIPVVPASTPGFR-GSQSAGYDAAV 134 (399)
T ss_pred HHHHHHHHHcCCCEEEEecCchhhhhccC----------HHHHHHHHHHhhCCceEEeeCCCCc-ccHHHHHHHHH
Confidence 444556778999987776553 3344442 344555554 358999999999998 44444443333
No 123
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=22.25 E-value=3.3e+02 Score=29.07 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEecC-CCCCCCCCCCCcccCHHhHHHHHHHHH-hcCCCEEEEeCCCCCC
Q 014460 248 LFKPIIGKVMEVFRPGAVVLQCG-ADSLSGDRLGCFNLSIKGHAECVKFMR-SFNVPLLLLGGGGYTI 313 (424)
Q Consensus 248 ~~~~iv~p~~~~f~PdlIvvsaG-~D~~~~Dplg~~~lt~~g~~~~~~~l~-~~~~pvl~lleGGY~~ 313 (424)
.+.+.|..+.++|+|++|+|... .....||- +..+++.++ +.+.|++.+--.||..
T Consensus 106 kL~~~I~ei~~~~~P~~I~V~tTC~~~lIGdD----------i~~v~~~~~~~~~~pvi~v~t~Gf~g 163 (475)
T PRK14478 106 KLFKAIDEIIEKYAPPAVFVYQTCVVALIGDD----------IDAVCKRAAEKFGIPVIPVNSPGFVG 163 (475)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCChHHHhccC----------HHHHHHHHHHhhCCCEEEEECCCccc
Confidence 34455566777899998766544 44445543 333555554 3588999998888876
No 124
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.22 E-value=2.8e+02 Score=25.12 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCC
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGY 311 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY 311 (424)
..+++.+||+|+|..| +++.-..+.+....++.++++-.||-.
T Consensus 95 ~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~i~vG~~~ 137 (172)
T PF03808_consen 95 NRINASGPDIVFVGLG--------------APKQERWIARHRQRLPAGVIIGVGGAF 137 (172)
T ss_pred HHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEECchh
Confidence 4567899999999998 344444455555666777555544433
No 125
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=22.18 E-value=3.8e+02 Score=24.53 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHH
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWC 321 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~ 321 (424)
|..=+..--..|...+++ .||++||+ ++|...-.=.|+...+......++|||+.....|- ..|.
T Consensus 75 D~~~La~A~~~l~~al~~-~~DLlivN---------kFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l-----~~W~ 139 (159)
T PF10649_consen 75 DPGALAEASAALRRALAE-GADLLIVN---------KFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL-----EAWR 139 (159)
T ss_pred CHHHHHHHHHHHHHHHhc-CCCEEEEc---------ccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH-----HHHH
Confidence 333333333445444443 69999985 67877777778887777777789999988755443 3687
Q ss_pred HHHhhh
Q 014460 322 YETGVA 327 (424)
Q Consensus 322 ~~~~~l 327 (424)
..+..+
T Consensus 140 ~Fagg~ 145 (159)
T PF10649_consen 140 AFAGGL 145 (159)
T ss_pred HhcCCc
Confidence 776643
No 126
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=22.12 E-value=3.3e+02 Score=27.52 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=25.1
Q ss_pred HHHHHHhcC--CcEEEEEccCcCCccccccccc
Q 014460 167 AILELLKQH--ERVLYVDIDIHHGDGVEEAFYT 197 (424)
Q Consensus 167 aa~~ll~~~--~RVlivD~DvHHGdGtq~~F~~ 197 (424)
++.++.+.. +||++|+-|-=.|.|..+.|..
T Consensus 138 ~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~ 170 (366)
T COG0683 138 AADYLVKKGGKKRVAIIGDDYAYGEGLADAFKA 170 (366)
T ss_pred HHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHH
Confidence 456676654 4999999999999999999864
No 127
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=22.10 E-value=1e+02 Score=28.56 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=15.1
Q ss_pred hcCCcEEEEEccCcCCcccccc
Q 014460 173 KQHERVLYVDIDIHHGDGVEEA 194 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq~~ 194 (424)
+..+|||+||.|.. ||-+...
T Consensus 26 ~~G~rvLliD~D~q-~~~~~~~ 46 (212)
T cd02117 26 EMGKKVLQVGCDPK-ADSTRLL 46 (212)
T ss_pred HCCCcEEEEeCCCC-CCccccc
Confidence 45689999999965 5555433
No 128
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=22.01 E-value=4.2e+02 Score=25.34 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcEEEE-------ecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeC
Q 014460 241 DDESYHYLFKPIIGKVMEVFRPGAVVL-------QCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGG 308 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f~PdlIvv-------saG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lle 308 (424)
=+...+..+.+.+..+... ..-+||+ ++|.|..... ..-.+ ...+..+.+.+..+..|+|....
T Consensus 24 l~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~--~~~~~-~~~~~~~~~~l~~~~kP~Iaav~ 94 (243)
T PRK07854 24 LNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDV--YADDF-PDALIEMLHAIDAAPVPVIAAIN 94 (243)
T ss_pred CCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccch--hHHHH-HHHHHHHHHHHHhCCCCEEEEec
Confidence 3556666666666654433 5556665 3445543210 00000 01123355566677899987764
No 129
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.99 E-value=2.9e+02 Score=23.45 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCC
Q 014460 255 KVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNV 301 (424)
Q Consensus 255 p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~ 301 (424)
..+.+.+||+|++|+-- .-+.....++++.|++.+.
T Consensus 44 ~~a~~~~~d~V~iS~~~-----------~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 44 EAAIQEDVDVIGLSSLS-----------GGHMTLFPEVIELLRELGA 79 (122)
T ss_pred HHHHHcCCCEEEEcccc-----------hhhHHHHHHHHHHHHhcCC
Confidence 45567899999997641 2234445667777877633
No 130
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.95 E-value=2.2e+02 Score=27.36 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=44.4
Q ss_pred HhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhHHHHHhhhhCCCCCCCCCchhhhhhcCCCCcCccCCCCCCCCCcHHH
Q 014460 287 KGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQL 366 (424)
Q Consensus 287 ~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~~~~~~~l~g~~~~~~~P~~~~~~~~~p~~~l~~~~~~~~~~n~~~~ 366 (424)
.|..++++.|++.|..|. |..||+. +....++-.||.+..+..-..-.|...|.--............-..+.
T Consensus 91 ~Gi~eLv~~L~~~~~~v~-liSGGF~------~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~ 163 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVY-LISGGFR------QLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEV 163 (227)
T ss_pred CCHHHHHHHHHHcCCeEE-EEcCChH------HHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHH
Confidence 467888999988777654 5589985 566677788886554322222223334432222333233444555566
Q ss_pred HHHHHH
Q 014460 367 LEEIRN 372 (424)
Q Consensus 367 l~~i~~ 372 (424)
|..+|+
T Consensus 164 i~~lrk 169 (227)
T KOG1615|consen 164 IALLRK 169 (227)
T ss_pred HHHHHh
Confidence 655554
No 131
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=21.70 E-value=57 Score=29.97 Aligned_cols=47 Identities=32% Similarity=0.422 Sum_probs=35.8
Q ss_pred cCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCCchhhhhH
Q 014460 269 CGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320 (424)
Q Consensus 269 aG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~~~~a~~~ 320 (424)
+|+|...-| |.|++...++++.++..+.++.+...||=|+.+++...
T Consensus 99 ~g~d~I~lD-----~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya 145 (169)
T PF01729_consen 99 AGADIIMLD-----NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA 145 (169)
T ss_dssp TT-SEEEEE-----S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred hCCCEEEec-----CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence 555555555 34889999999999887777788889999999988764
No 132
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=21.49 E-value=2.7e+02 Score=25.64 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=28.6
Q ss_pred HHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCCCCCC
Q 014460 253 IGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313 (424)
Q Consensus 253 v~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleGGY~~ 313 (424)
+...+.+.+||+|+|..| +++.=.++.+.....+.++++-.||..+.
T Consensus 92 i~~~I~~s~~dil~VglG--------------~PkQE~~~~~~~~~~~~~v~~gvGg~fd~ 138 (177)
T TIGR00696 92 ALAKIARSGAGIVFVGLG--------------CPKQEIWMRNHRHLKPDAVMIGVGGSFDV 138 (177)
T ss_pred HHHHHHHcCCCEEEEEcC--------------CcHhHHHHHHhHHhCCCcEEEEeceeeee
Confidence 334567899999999998 34433334444344555665555555554
No 133
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=21.26 E-value=3.5e+02 Score=28.84 Aligned_cols=70 Identities=4% Similarity=0.049 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhc-CCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHH-----h---cCCCEEEEeCCCCCCchhh
Q 014460 248 LFKPIIGKVMEVF-RPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMR-----S---FNVPLLLLGGGGYTIRNVA 317 (424)
Q Consensus 248 ~~~~iv~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~-----~---~~~pvl~lleGGY~~~~~a 317 (424)
.+++.|..+.++| +|++|+|..++ =...||-+ ..+++.++ + .+.|++.+--+||... ..
T Consensus 76 kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDDi----------~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs-~~ 144 (457)
T TIGR02932 76 RIEEGVLTLARRYPNLRVIPIITTCSTETIGDDI----------EGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGS-QV 144 (457)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCchHHhhcCCH----------HHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCc-HH
Confidence 3445566777889 69988886553 33445532 23443331 1 2689999999999974 33
Q ss_pred hhHHHHHhhhh
Q 014460 318 RCWCYETGVAL 328 (424)
Q Consensus 318 ~~~~~~~~~l~ 328 (424)
..|...+..++
T Consensus 145 ~G~~~a~~ali 155 (457)
T TIGR02932 145 TGYAECVKSVI 155 (457)
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 134
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=21.04 E-value=3.6e+02 Score=27.18 Aligned_cols=77 Identities=12% Similarity=0.213 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCC-------------------CCcc----cCHHhHHHHHHHHH
Q 014460 241 DDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRL-------------------GCFN----LSIKGHAECVKFMR 297 (424)
Q Consensus 241 ~D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dpl-------------------g~~~----lt~~g~~~~~~~l~ 297 (424)
.-+..-.+++.++..+.+ .+.+++-+--||.++..+.+ |.-. .+.+.+.++.+.|+
T Consensus 10 ~apG~Na~i~~vv~~a~~-~g~~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt~LgtsR~~~~~~~~~~~~~~~~l~ 88 (301)
T TIGR02482 10 DAPGMNAAIRAVVRTAIY-HGFEVYGIRRGYKGLINGEIKPLESKNVSGIIHRGGTILGTARCPEFKTEEGRQKAVENLK 88 (301)
T ss_pred CcHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHhcCCCeEeCCHHHHhhHHhCCCceeccCCCCccCCHHHHHHHHHHHH
Confidence 344566677777765544 47789999999988865421 1111 13456777888999
Q ss_pred hcCCCEEEEeCCCCCCchhhh
Q 014460 298 SFNVPLLLLGGGGYTIRNVAR 318 (424)
Q Consensus 298 ~~~~pvl~lleGGY~~~~~a~ 318 (424)
+.++..|++.||-=+.+...+
T Consensus 89 ~~~Id~Li~IGGdgs~~~a~~ 109 (301)
T TIGR02482 89 KLGIEGLVVIGGDGSYTGAQK 109 (301)
T ss_pred HcCCCEEEEeCCchHHHHHHH
Confidence 999998888777544443333
No 135
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=21.01 E-value=4e+02 Score=27.25 Aligned_cols=78 Identities=14% Similarity=0.107 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHhHHH---HHH-HHHhcCCCEEEEeCCCCCCchhh--hhHHHHH
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAE---CVK-FMRSFNVPLLLLGGGGYTIRNVA--RCWCYET 324 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~---~~~-~l~~~~~pvl~lleGGY~~~~~a--~~~~~~~ 324 (424)
..+.|++++-+=-+|-|+...--...+-+|.+..|-.+... |++ .|+.+|+.|.++--| +-.++++ .-|....
T Consensus 147 ~~~lpLlr~arGRvVnvsS~~GR~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T~l~~~~~~~~~~ 225 (322)
T KOG1610|consen 147 KAFLPLLRRARGRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKTNLANPEKLEKRM 225 (322)
T ss_pred HHHHHHHHhccCeEEEecccccCccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-ccccccCChHHHHHHH
Confidence 55678888888899999988888888778888888665544 444 355689998887555 5555554 3455444
Q ss_pred hhhhC
Q 014460 325 GVALG 329 (424)
Q Consensus 325 ~~l~g 329 (424)
..+.+
T Consensus 226 ~~~w~ 230 (322)
T KOG1610|consen 226 KEIWE 230 (322)
T ss_pred HHHHh
Confidence 44544
No 136
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=20.68 E-value=1e+02 Score=29.78 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.8
Q ss_pred hcCCcEEEEEccCcCC
Q 014460 173 KQHERVLYVDIDIHHG 188 (424)
Q Consensus 173 ~~~~RVlivD~DvHHG 188 (424)
+..+||++||.|.+.+
T Consensus 26 ~~G~~VlliD~D~q~~ 41 (275)
T TIGR01287 26 EMGKKVMIVGCDPKAD 41 (275)
T ss_pred HCCCeEEEEeCCCCCC
Confidence 4468999999998843
No 137
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=20.43 E-value=1.4e+02 Score=28.98 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHH--hHHHHHHHHHhcCCCEEEE
Q 014460 251 PIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIK--GHAECVKFMRSFNVPLLLL 306 (424)
Q Consensus 251 ~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~--g~~~~~~~l~~~~~pvl~l 306 (424)
.++..+ ++-+|++|++.+| |.+.+.|+..+.-..+ .-..+++.++.++..++.+
T Consensus 34 ~~i~~~-r~~~~~~l~ld~G-D~~~gs~~~~~~~~~~~~~~~~~~~~ln~~g~d~~~l 89 (277)
T cd07410 34 TLIKKA-RAENPNTLLIDNG-DTIQGSPLADYYAKIEDGDPHPMIAAMNALGYDAGTL 89 (277)
T ss_pred HHHHHH-HhcCCCeEEEeCC-ccCCccHHHHHhhhcccCCCChHHHHHHhcCCCEEee
Confidence 344433 3348999999888 7776666544321100 1123677777777776666
No 138
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=20.41 E-value=1.1e+02 Score=29.49 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=14.6
Q ss_pred hcCCcEEEEEccCcCCcccc
Q 014460 173 KQHERVLYVDIDIHHGDGVE 192 (424)
Q Consensus 173 ~~~~RVlivD~DvHHGdGtq 192 (424)
+..+|||+||.|.. ||-++
T Consensus 26 ~~g~rVLliD~D~q-~~~~~ 44 (268)
T TIGR01281 26 KLGKRVLQIGCDPK-HDSTF 44 (268)
T ss_pred hCCCeEEEEecCcc-ccccc
Confidence 55789999999974 66554
No 139
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=20.29 E-value=2.7e+02 Score=29.16 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhc-CCcEEEEecCC-CCCCCCCCCCcccCHHhHHHHHHHHHhc--CCCEEEEeCCCCCC
Q 014460 248 LFKPIIGKVMEVF-RPGAVVLQCGA-DSLSGDRLGCFNLSIKGHAECVKFMRSF--NVPLLLLGGGGYTI 313 (424)
Q Consensus 248 ~~~~iv~p~~~~f-~PdlIvvsaG~-D~~~~Dplg~~~lt~~g~~~~~~~l~~~--~~pvl~lleGGY~~ 313 (424)
.+++.|..+++++ +|++|+|...+ -...||. ...+++.++.. +.|++.+-..||..
T Consensus 83 ~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDD----------i~~v~~e~~~~~~~~pvv~v~t~Gf~g 142 (427)
T PRK02842 83 ELDRVVEELIKRRPNISVLFLVGSCPSEVIKLD----------LEGLAERLSTEFAGVPVLNYSGSGLET 142 (427)
T ss_pred HHHHHHHHHHhccCCCCEEEEECCChHHhhcCC----------HHHHHHHhhcccCCCeEEEeeCCCccc
Confidence 4445555555565 89998887664 2234443 23344545432 67777777777754
No 140
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.21 E-value=9.2e+02 Score=24.51 Aligned_cols=136 Identities=19% Similarity=0.258 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCCCCCCCCCcccCHHh----HHHHHHHHHhcCCCEE--EEeCCCCCCch
Q 014460 242 DESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKG----HAECVKFMRSFNVPLL--LLGGGGYTIRN 315 (424)
Q Consensus 242 D~~yl~~~~~iv~p~~~~f~PdlIvvsaG~D~~~~Dplg~~~lt~~g----~~~~~~~l~~~~~pvl--~lleGGY~~~~ 315 (424)
.+.|..+++ +...+++|+-=+|.+- |..- .+-+..-...| .++.+..|..+..|++ ++|||| +..+
T Consensus 133 PeGyRKAlR--lm~~AekF~lPiitfI---DT~G--AypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGg-SGGA 204 (317)
T COG0825 133 PEGYRKALR--LMKLAEKFGLPIITFI---DTPG--AYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGG-SGGA 204 (317)
T ss_pred chHHHHHHH--HHHHHHHhCCCEEEEe---cCCC--CCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCC-chhh
Confidence 467999996 5678899985554432 1110 01111222223 3345556666788976 567888 4556
Q ss_pred hhhhHHHHHhhhhCCCCCCCCCchh---hhh-------------hcCCC-CcC------ccCCCCCCCCCcHHHHHHHHH
Q 014460 316 VARCWCYETGVALGVEVDDKMPQHE---YYE-------------YFGPD-YTL------HVAPSNMENKNSRQLLEEIRN 372 (424)
Q Consensus 316 ~a~~~~~~~~~l~g~~~~~~~P~~~---~~~-------------~~~p~-~~l------~~~~~~~~~~n~~~~l~~i~~ 372 (424)
+|-.+.--+.+|...-.+..-|+-. .|. --.++ .++ -.+|..-...+.....+.+++
T Consensus 205 LAi~vad~V~mle~s~ySVisPEG~AsILWkD~~ka~eAAe~mkita~dLk~lgiID~II~Ep~ggAhr~~~~~a~~l~~ 284 (317)
T COG0825 205 LAIGVADRVLMLENSTYSVISPEGCASILWKDASKAKEAAEAMKITAHDLKELGIIDGIIPEPLGGAHRDPEAAAEALKN 284 (317)
T ss_pred HHhhHHHHHHHHHhceeeecChhhhhhhhhcChhhhHHHHHHcCCCHHHHHhCCCcceeccCCCCccccCHHHHHHHHHH
Confidence 6666555555555432222222210 010 00011 000 012333344555567888899
Q ss_pred HHHHHhhcCCCCC
Q 014460 373 KLLEYLSKLQHAP 385 (424)
Q Consensus 373 ~~~~~~~~l~~~~ 385 (424)
.|.+.|+.|..-|
T Consensus 285 ~l~~~l~~L~~l~ 297 (317)
T COG0825 285 ALLKELHELDKLP 297 (317)
T ss_pred HHHHHHHHHHcCC
Confidence 9999888776554
No 141
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=20.12 E-value=44 Score=30.49 Aligned_cols=41 Identities=22% Similarity=0.302 Sum_probs=29.8
Q ss_pred cCCcEEEEecCCCCCCCCCCCCcccCHHhHHHHHHHHHhcCCCEEEEeCC
Q 014460 260 FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGG 309 (424)
Q Consensus 260 f~PdlIvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~pvl~lleG 309 (424)
-++|+||+ |-+|.|.+...+|.+.+..+..-+.|+|.++-=
T Consensus 94 ~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~ 134 (168)
T PF03266_consen 94 SSSDLIVI---------DEIGKMELKSPGFREAVEKLLDSNKPVIGVVHK 134 (168)
T ss_dssp HCCHEEEE------------STTCCC-CHHHHHHHHHHCTTSEEEEE--S
T ss_pred CCCCEEEE---------eccchhhhcCHHHHHHHHHHHcCCCcEEEEEec
Confidence 58899886 899999999999999888887777888887643
Done!