RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014460
(424 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 322 bits (827), Expect = e-108
Identities = 154/362 (42%), Positives = 227/362 (62%), Gaps = 4/362 (1%)
Query: 21 YFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDY 80
Y Y PE + P R M H+L+ Y L + M+++KP A ++ FH D Y
Sbjct: 5 YIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62
Query: 81 VSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGLCDIA 140
+ L+ ++ E D + + +G DCP +G+F + G ++ A L G+C +A
Sbjct: 63 LQHLQKVSQEGDDDHPDSI-EYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121
Query: 141 INWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDR 200
INW+GG HHAKK EASGFCY+ND VL IL L ++ ER+LYVD+D+HHGDGVE+AF T +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181
Query: 201 VMTVSFHKFGDY-FPGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPIIGKVMEV 259
VMTVS HKF FPGTGD+ D+G KG++YS+NVP+ DGI DE Y+ + + ++ +V +
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241
Query: 260 FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARC 319
F P AVVLQ GAD+++GD + FN++ G +C+K++ + + L+LGGGGY + N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301
Query: 320 WCYETGVALGVEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLS 379
W Y TGV LG + ++P HE++ +GPDY L + PS ++N +++I N + L
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 361
Query: 380 KL 381
+
Sbjct: 362 HV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 266 bits (680), Expect = 2e-86
Identities = 113/372 (30%), Positives = 175/372 (47%), Gaps = 9/372 (2%)
Query: 17 RKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFH 76
+KV + G Y Y + HP+K R+ + L+ +++K PA + +L FH
Sbjct: 1 KKVKLIGTLDYGKYRYPKNHPLKIPRVSLLLRFKDAMNLIDEKELIKSRPATKEELLLFH 60
Query: 77 ADDYVSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFCQTYAGGSVGGAVKLNHGL 136
+DY++ L + + K G + PV +F+ G +V +
Sbjct: 61 TEDYINTLMEAERCQCVPKGAREKYNIGGYENPVSYAMFTGSSLATGSTVQAIEEFLK-- 118
Query: 137 CDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQH-ERVLYVDIDIHHGDGVEEAF 195
++A N AGG+HHA K A+GFCY+N+ + I L K+ +R+LY+D+D HH DGV+EAF
Sbjct: 119 GNVAFNPAGGMHHAFKSRANGFCYINNPAVGIEYLRKKGFKRILYIDLDAHHCDGVQEAF 178
Query: 196 YTTDRVMTVSFHKFGDYF--PGTGDIRDIGYSKGKFYSLNVPLDDGIDDESYHYLFKPII 253
Y TD+V +S H+ +Y G + +IG KGK Y+LN+PL G++D + + + +
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 238
Query: 254 GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTI 313
V EVF P +LQ G D L D L FNLS + +R + LGGGGY
Sbjct: 239 EIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHP 298
Query: 314 RNVARCWCYETGVALGVEVDDKMPQHEYYEYFGPDY----TLHVAPSNMENKNSRQLLEE 369
+AR W G EV +K+ D+ +E E
Sbjct: 299 YALARAWTLIWCELSGREVPEKLNNKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGE 358
Query: 370 IRNKLLEYLSKL 381
+R ++ + L K
Sbjct: 359 VRKEVKDTLEKA 370
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 200 bits (508), Expect = 7e-61
Identities = 87/396 (21%), Positives = 154/396 (38%), Gaps = 46/396 (11%)
Query: 18 KVCYFYDPEVGNYYYGQG----HPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLC 73
YD + + G HP RI+ + L GL + L+ A +L
Sbjct: 5 TTGLIYDSVMLKHQCSCGDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQ 64
Query: 74 RFHADDYVSFLRS-----ITPETQQDQLRQLKRFNVGEDC--------PVFDGLFSF--C 118
H++ +V + + + + +R V C +++ L S
Sbjct: 65 SVHSERHVLLYGTNPLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAA 124
Query: 119 QTYAGGSVGGAVKLNHGLCDIAINWAGGL-HHAKKCEASGFCYVNDIVLAILELLKQH-- 175
+ AG A K+ HHA A GFC+ N + +A +L +Q
Sbjct: 125 RWAAGSVTDLAFKVASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIACRQLQQQSKA 184
Query: 176 ERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGD--YFPGTGDIRDIGYSKGKFYSLN 233
++L VD D+HHG+G ++ FY V+ +S H+ D +FPG+G + ++G G+ +++N
Sbjct: 185 SKILIVDWDVHHGNGTQQTFYQDPSVLYISLHRHDDGNFFPGSGAVDEVGAGSGEGFNVN 244
Query: 234 VPL----DDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGD--RLGCFNLSIK 287
V D + D Y F+ ++ + F P V++ G D+ G LG +++S K
Sbjct: 245 VAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEGHPAPLGGYHVSAK 304
Query: 288 GHAECVKFMRSF-NVPLLLLGGGGYTIRNVARCWCYETGVALGVEVDDKMPQHEYYEYFG 346
+ + + ++L GG+ + + LG VD P E
Sbjct: 305 CFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGNRVD---PLSEEGWKQK 361
Query: 347 PDYTLHVAPSNMENKNSRQLLEEIRNKLLEYLSKLQ 382
P N N+ + LE + +Y +Q
Sbjct: 362 P------------NLNAIRSLEAVIRVHSKYWGCMQ 385
>d1g8ea_ a.145.1.1 (A:) Flagellar transcriptional activator FlhD
{Escherichia coli [TaxId: 562]}
Length = 98
Score = 27.8 bits (62), Expect = 0.85
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 72 LCRFHADDYVSFLRSITPETQQDQLRQL 99
+C F D + + +T +++ D L+Q+
Sbjct: 64 VCHFRFDSHQ-TITQLTQDSRVDDLQQI 90
>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 169
Score = 28.6 bits (63), Expect = 0.95
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 240 IDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSF 299
+D P + +EV + + + N ++ V+ S
Sbjct: 67 VDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKP---ELILLDNFAVWQTQTAVQRRDSR 123
Query: 300 NVPLLLLGGGGYTIRNVARCWCYETGV 326
++L GG +++ A ETGV
Sbjct: 124 APTVMLESSGGLSLQTAAT--YAETGV 148
>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
C-terminal domain {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 106
Score = 27.3 bits (61), Expect = 1.4
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 83 FLRSITPETQQDQLRQLKR 101
FLR++ Q + ++
Sbjct: 2 FLRNLPAYESQKLHQAMQT 20
>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
domain {Thermosynechococcus elongatus bp-1 [TaxId:
197221]}
Length = 106
Score = 27.0 bits (60), Expect = 1.5
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 83 FLRSITPETQQDQLRQLKR 101
F R ++P ++ L +L+
Sbjct: 5 FFRRMSPADKRKLLDELRS 23
>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 202
Score = 27.6 bits (61), Expect = 2.7
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 385 PSVQFQERPPDSELPEADEDQEDGDERWDPDSDMDVDDER 424
P+ FQ RP + ++ + GD + + + R
Sbjct: 111 PAKMFQ-RPLSAMAASINDLGQSGDFFYRS--EPEATARR 147
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 27.5 bits (60), Expect = 3.4
Identities = 12/90 (13%), Positives = 19/90 (21%), Gaps = 5/90 (5%)
Query: 158 FCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTG 217
+ + +D I +L I E + + G
Sbjct: 217 WVHTDDHCRGIALVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKG 276
Query: 218 DIRDIGYSKGKF-----YSLNVPLDDGIDD 242
GK Y V DG+
Sbjct: 277 HDLRYSLDGGKIERELGYRPQVSFADGLAR 306
>d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte
(Rhodomonas sp. CS24) [TaxId: 79257]}
Length = 175
Score = 26.4 bits (58), Expect = 5.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 290 AECVKFMRSFNVPLLLLGGGGYTIRNVARCW 320
++ V M N L+ G YT R +A C
Sbjct: 51 SDAVSGMICENPSLISPSGNCYTNRRMAACL 81
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 1/98 (1%)
Query: 22 FYDPEVG-NYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQVLKPFPARERDLCRFHADDY 80
YDP +G Y+ + + + ++HA L H ++ + P + ++ +
Sbjct: 11 LYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNR 70
Query: 81 VSFLRSITPETQQDQLRQLKRFNVGEDCPVFDGLFSFC 118
+P +++ R++ N + V +
Sbjct: 71 KGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIV 108
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 176
Score = 25.7 bits (56), Expect = 8.6
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 168 ILELLKQHERVLYVDIDIHHGDG 190
++L + RVL V+I + G
Sbjct: 24 FYKILSRPRRVLIVNIPVRLDGG 46
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 25.4 bits (56), Expect = 8.7
Identities = 12/46 (26%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 81 VSFLRSITPETQQDQLRQLKRFN-----VGEDCPVFDGLFSFCQTY 121
FL T QQ L L + N + + L QTY
Sbjct: 61 FGFLSQKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLLQVNQTY 106
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 25.9 bits (56), Expect = 9.8
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 112 DGLFSFCQTYAGGSVGGAVKLNHGLCDIAINWAGGLHHA 150
DGL C ++ G + ++NH D +N GL
Sbjct: 229 DGLVGTCSSHLGMVIRDNYRMNHL--DE-VNQVFGLTSL 264
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.141 0.445
Gapped
Lambda K H
0.267 0.0446 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,767,053
Number of extensions: 88518
Number of successful extensions: 333
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 22
Length of query: 424
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,199,356
Effective search space: 402983616
Effective search space used: 402983616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)