BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014461
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 142/283 (50%), Gaps = 10/283 (3%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
+ I+G PN GKS+++N ++G K++ SRK TT H ++G+ T+ Q DTPGL + +
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
K R+ + ++ ++ +V +V+F V +PD ++ R GK AP
Sbjct: 68 -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-APVILAVN 121
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
N A Q L I +GL + A+ + + +A + E
Sbjct: 122 KVDNVQEKADLLPHLQFLASQMNFLD-IVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 179
Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
D +T + + ++ E++RE+L+ + E+PYS+ + + G I ++ +
Sbjct: 180 DYIT--DRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 237
Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424
Q+K+++G G+KI IG+EA ++++ +F+ VHL L V++K+
Sbjct: 238 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 280
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 142/283 (50%), Gaps = 10/283 (3%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
+ I+G PN GKS+++N ++G K++ SRK TT H ++G+ T+ Q DTPGL + +
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 70
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
K R+ + ++ ++ +V +V+F V +PD ++ R GK AP
Sbjct: 71 -----KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGK-APVILAVN 124
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
N A Q L I +GL + A+ + + +A + E
Sbjct: 125 KVDNVQEKADLLPHLQFLASQMNFLD-IVPISAETGLNVDTIAAIVRKHLPEATHH-FPE 182
Query: 322 DPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKL 381
D +T + + ++ E++RE+L+ + E+PYS+ + + G I ++ +
Sbjct: 183 DYIT--DRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVERE 240
Query: 382 SQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424
Q+K+++G G+KI IG+EA ++++ +F+ VHL L V++K+
Sbjct: 241 GQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 283
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 45/302 (14%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLN 200
V I+G PN GKS+++N ++GTKV+ +S K TT VLGV + QI DTPG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 71
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
K H V++ +S A +V++ + D ++++ P ++ VI +
Sbjct: 72 KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGL--- 303
I ++ K P K VL + E K P I S LKGA L
Sbjct: 128 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 171
Query: 304 -KALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDW 362
K + +YL E P ED +++ ++ ++ E+VRE+ + +E+P SI ++ +
Sbjct: 172 VKTILKYLPEGEPLFP--ED--MITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI 227
Query: 363 K--DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQV 420
K D L I+ +I ++ + + I++GK G ++ IG A +EL I R V+L L V
Sbjct: 228 KPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWV 287
Query: 421 RL 422
++
Sbjct: 288 KV 289
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 146/302 (48%), Gaps = 45/302 (14%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLN 200
V I+G PN GKS+++N ++GTKV+ +S K TT VLGV + QI DTPG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEP 72
Query: 201 KSG--YSHKDVKVRVESAWSAVNLFEVLMVVFD-----------VHRHLTSPDSR-VIRL 246
K H V++ +S A +V++ + D ++++ P ++ VI +
Sbjct: 73 KKSDVLGHSMVEIAKQSLEEA----DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 247 IERMGKQAPPKQKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGL--- 303
I ++ K P K VL + E K P I S LKGA L
Sbjct: 129 INKIDKIGP--AKNVLPL--------------IDEIHKKHPELTEIVPISALKGANLDEL 172
Query: 304 -KALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDW 362
K + +YL E P ED +++ ++ ++ E+VRE+ + +E+P SI ++ +
Sbjct: 173 VKTILKYLPEGEPLFP--ED--MITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEI 228
Query: 363 K--DLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQV 420
K D L I+ +I ++ + + I++GK G ++ IG A +EL I R V+L L V
Sbjct: 229 KPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWV 288
Query: 421 RL 422
++
Sbjct: 289 KV 290
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 22/287 (7%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
V I+G PN GKS+++N ++G KVA +S + TT + G++T+ QI DTPGL
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL---- 65
Query: 202 SGYSHKDVKVRVE----SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257
HK + E + A+ ++ V D+ T D V R ++ + + P
Sbjct: 66 ----HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVP-- 119
Query: 258 QKRVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317
+L + A + LP E M S L + L L+ +
Sbjct: 120 ---ILLVGNKLDAAKYPEEAMKAYH-ELLPEAEP-RMLSALDERQVAELKADLLALMPEG 174
Query: 318 P--WSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH 375
P + ED S++ E++RE + + E+PY++ ++ + + +G L I+
Sbjct: 175 PFFYPED-YAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAI 233
Query: 376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 422
L + SQ+ I++G+ G KI IG ++L ++ + V+L L+V++
Sbjct: 234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKV 280
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
+IG PN GKSS++N M+G + VS TT V T + I DT G+
Sbjct: 200 LIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKV 259
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
Y + K V A A++ EV+ VV D + D R+ GK
Sbjct: 260 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 307
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 70/172 (40%), Gaps = 15/172 (8%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
V I+G PN GKS+I N + G +++ V T + + + DT G+ +
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
+ ++R + A A++ +V++ + + +T+ D V +++ R K+ V
Sbjct: 86 EPFL---AQIR-QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT------KKPVV 135
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313
L +N F L G+ + SG G GL L + E
Sbjct: 136 LAVNKLDNTEMRANIY----DFYSL-GFGEPYPISGTHGLGLGDLLDAVAEH 182
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
+IG PN GKSS++N +G + VS TT V T + I DT G
Sbjct: 180 LIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKV 239
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
Y + K V A A++ EV+ VV D + D R+ GK
Sbjct: 240 YETTE-KYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGK 287
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 78/191 (40%), Gaps = 19/191 (9%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
V I+G PN GKS+I N + G +++ V T + + + DT G+ +
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261
+ ++R + A A + +V++ + +T+ D V +++ R K+ V
Sbjct: 66 EPFL---AQIR-QQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRT------KKPVV 115
Query: 262 LCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321
L +N F L G+ + SG G GL L + E P ++
Sbjct: 116 LAVNKLDNTEXRANIY----DFYSL-GFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETK 170
Query: 322 DPLTMSEEVMK 332
+EEV++
Sbjct: 171 ----YNEEVIQ 177
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
V V + G PN GK+S+ N + GTK V+ T + GV T I + D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
GYS D K+ + +++++V D +P+ + L+E + + +K
Sbjct: 64 -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
+L M E KHL G +F TS + G GL+ L + ++E A
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVEYA 165
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 15/175 (8%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
V V + G PN GK+S+ N + GTK V+ T + GV T I + D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259
GYS D K+ + +++++V D +P+ + L+E + + +K
Sbjct: 64 -SLGYSSIDEKIARDYLLKGDA--DLVILVADS----VNPEQSLYLLLEILEME----KK 112
Query: 260 RVLCMNXXXXXXXXXXXXXXAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314
+L M E KHL G +F TS + G GL+ L + ++E A
Sbjct: 113 VILAMTAIDEAKKTGMKIDRYELQKHL-GIPVVF-TSSVTGEGLEELKEKIVEYA 165
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
++ V I+G PN GKS++ N ++ + A VS TT V + + DT GL
Sbjct: 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239
Query: 199 LNK-------SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251
YS+ V +E A +V+++V D + +T D R L ER G
Sbjct: 240 RKSRVEPRTVEKYSNYRVVDSIEKA-------DVVVIVLDATQGITRQDQRXAGLXERRG 292
Query: 252 KQA 254
+ +
Sbjct: 293 RAS 295
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
V I+G PN GKS++ N +V K A V + T V + + DT G+ N
Sbjct: 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 62
Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 240
+ K E + + ++++ V D R +T D
Sbjct: 63 PQDIISQKXK---EVTLNXIREADLVLFVVDGKRGITKED 99
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199
V V + G PN GK+S+ N + GTK V+ T + GV T I + D PG
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTY- 63
Query: 200 NKSGYSHKDVKV 211
GYS D K+
Sbjct: 64 -SLGYSSIDEKI 74
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
+VG +G P+ GKS++++ + GT+ A + TT V GV+ +I + D PG++
Sbjct: 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEF-TTLVTVPGVIRYKGAKIQMLDLPGII-- 130
Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
KD + R + + +L ++ DV++ L
Sbjct: 131 ---DGAKDGRGRGKQVIAVARTCNLLFIILDVNKPL 163
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
I+G PN GKSS+ N ++ + A V+ T GV+ + + DT GL
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK- 64
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK 252
K ++ +V+ A EV++ D LT D V + R GK
Sbjct: 65 -WEKKIQEKVDRALEDA---EVVLFAVDGRAELTQADYEVAEYLRRKGK 109
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
+ VG+IG PN+GK+++ N + G + V T G+ D Q+ + D PG
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ + ++G GKSS +N ++G +V ++S + V+ ++A + I DTPGL+
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHR 234
+ GY + D+ + + ++ +VL+ V D +R
Sbjct: 99 --EGGYIN-DMALNIIKSFLLDKTIDVLLYVDRLDAYR 133
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ V ++G GKSS +N ++G +V VS V+ T I I DTPGL+
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHRHLTSPDSRVIRLIERMGKQAPP 256
++GY + + + + +VL+ V DV+R VI + + GK+
Sbjct: 96 --EAGYVNHQA-LELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWC 152
Query: 257 KQKRVL 262
K VL
Sbjct: 153 KTLLVL 158
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
IIG PN GKS++IN + +A + TT + K ++ + DTPG++ K
Sbjct: 125 IIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQ---QWVKVGKELELLDTPGILWPK 179
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ V ++G GKSS +N ++G +V VS V+ T I I DTPGL+
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHRHLTSPDSRVIRLIERMGKQAPP 256
++GY + + + + +VL+ V DV+R VI + + GK+
Sbjct: 96 --EAGYVNHQA-LELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGKEIWC 152
Query: 257 KQKRVL 262
K VL
Sbjct: 153 KTLLVL 158
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201
V I+G PN GKSS++N + A V+ TT V ++Q+ + P +L+
Sbjct: 227 VAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVV-------ESQLVVGGIPVQVLDT 279
Query: 202 SGY---SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRV 243
+G S + K+ VE + A N +++++ D T+ D +
Sbjct: 280 AGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEI 324
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
+ +G+IG PN+GK+++ N + G++ V T G + D Q+ + D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
+ +G+IG PN+GK+++ N + G++ V T G + D Q+ + D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLM 198
I+G PN GKS+IIN + G + ++V + T G+ + + I DTPG++
Sbjct: 104 IVGVPNTGKSTIINKLKGKRASSVGAQPGITK----GIQWFSLENGVKILDTPGIL 155
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196
+ +G+IG PN+GK+++ N + G++ V T G + D Q+ + D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ V ++G GKSS +N ++G +V VS V+ T I I DTPGL+
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 95
Query: 199 LNKSGY 204
++GY
Sbjct: 96 --EAGY 99
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
V+ I G PNAGKS+++N ++G + A VS TT + T + DT GL
Sbjct: 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGL 291
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ V ++G GKSS +N ++G +V VS V+ T I I DTPGL+
Sbjct: 35 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLV 94
Query: 199 LNKSGY 204
++GY
Sbjct: 95 --EAGY 98
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGL 197
+ G N GKSS +N +VG V+ VS TTT V M + + DTPGL
Sbjct: 39 VAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGL 93
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLNKS 202
I G PNAGKSS++N + G + AA+ TT +VL D + I DT GL
Sbjct: 12 IAGRPNAGKSSLLNALAGRE-AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL----R 66
Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFD 231
S + ++ +E AW + + ++ + D
Sbjct: 67 EASDEVERIGIERAWQEIEQADRVLFMVD 95
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLNKS 202
I G PNAGKSS++N + G + AA+ TT +VL D + I DT GL
Sbjct: 9 IAGRPNAGKSSLLNALAG-REAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL----R 63
Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFD 231
S + ++ +E AW + + ++ + D
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFMVD 92
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 86/209 (41%), Gaps = 22/209 (10%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203
I+G PN GKS+++N ++ A V+ TT + + I DT G+ +S
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV---RSE 304
Query: 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263
+ ++ +E + ++++ V D L D +++ I K KR L
Sbjct: 305 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI---------KNKRYLV 355
Query: 264 MNXXXXXXXXXXXXXXAEQFKHLPGYER-IFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322
+ E+ K+ G +R + S LKG GL+ L E+++ R E
Sbjct: 356 V----INKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKL-----EESIYRETQEI 406
Query: 323 PLTMSEEVMKNISLEVVRERLLDHVHQEI 351
S+ ++ N+ + + E + H+ I
Sbjct: 407 FERGSDSLITNLRQKQLLENVKGHLEDAI 435
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197
V ++G PN GK++I N + G + V T + G+M + + + D PG+
Sbjct: 5 TVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGI 60
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
S+ + + G GKSS +N ++G +V ++S + V ++A + I DTPGL+
Sbjct: 39 SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLI 98
Query: 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVV--FDVHR 234
+ GY + D + + ++ +VL+ V D +R
Sbjct: 99 --EGGYIN-DXALNIIKSFLLDKTIDVLLYVDRLDAYR 133
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLNKS 202
I G PNAGKSS++N + G + AA+ TT +VL D + I DT GL
Sbjct: 9 IAGRPNAGKSSLLNALAG-REAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLRE--- 64
Query: 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFD 231
S + ++ +E AW + + ++ D
Sbjct: 65 -ASDEVERIGIERAWQEIEQADRVLFXVD 92
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-- 198
++GI+G N+GK+S+ N + G V K TT + + +I + DT G +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG 239
Query: 199 ------------LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
L+++ YS + V ++S +S L E L F++ R +
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILV-IDSTFSENLLIETLQSSFEILREI 288
>pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding
Protein 1 Pff0625w From Plasmodium Falciparum
Length = 228
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS 205
GAPN GKSS +N +V V + TT + +G + I DTPGL L+++ +
Sbjct: 36 GAPNVGKSSFMN-IVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGL-LDRAFEN 93
Query: 206 HKDVKVRVESAWSAVNLFEVLMVVFDV 232
+++ +A + +N V++ + D+
Sbjct: 94 RNTIEMTTITALAHIN--GVILFIIDI 118
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLN 200
VG++G PNAGKSS++ M ++ TT LGV+ ++ + + D PG++
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 218
Query: 201 KS 202
S
Sbjct: 219 AS 220
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAA 166
S+ +GI+G PN GKS+ N + ++ +A
Sbjct: 22 SLKIGIVGLPNVGKSTFFNVLTNSQASA 49
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200
V I G PN GKS+++ + K S T V G + I DTPGL+
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINV-GQFEDGYFRYQIIDTPGLL-- 225
Query: 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250
S ++ ++ ++ + L +++ +FD H P I L E +
Sbjct: 226 DRPISERN-EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274
>pdb|3KXL|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235s
pdb|3KXL|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235s
Length = 364
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-- 198
++GI+G N+GK+S+ N + G V K TT + + +I + DT +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVSFIRG 239
Query: 199 ------------LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
L+++ YS + V ++S +S L E L F++ R +
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILV-IDSTFSENLLIETLQSSFEILREI 288
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
+ V G NAGKSS +N + K A + KT T +++ + AD + + D P
Sbjct: 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT-QLINLFEVADGKRLV-DLP--- 80
Query: 199 LNKSGYSHKDVKVRVESAWSAV--------NLFEVLMVVFDVHRHLTSPDSRVI 244
GY + +V ++ W + L+V+ D+ L D ++I
Sbjct: 81 ----GYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 130
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI 189
+AVGI+G PN GKS++ N + A + T V GV+ D ++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV-GVVPLEDERL 50
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQI 189
+AVGI+G PN GKS++ N + A + T V GV+ D ++
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNV-GVVPLEDERL 50
>pdb|3KXK|A Chain A, Crystal Structure Of Ssgbp Mutation Variant G235p
pdb|3KXK|B Chain B, Crystal Structure Of Ssgbp Mutation Variant G235p
Length = 364
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-- 198
++GI+G N+GK+S+ N + G V K TT + + +I + DT +
Sbjct: 181 SIGIVGYTNSGKTSLFNSLTGL-TQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVPFIRG 239
Query: 199 ------------LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL 236
L+++ YS + V ++S +S L E L F++ R +
Sbjct: 240 IPPQIVDAFFVTLSEAKYSDALILV-IDSTFSENLLIETLQSSFEILREI 288
>pdb|3Q3J|A Chain A, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 112
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLID----WKDLRDGSLRIE 373
P +E+ + +V+ ++ V+E++LD V++ +PYS R +D W+ R + ++
Sbjct: 19 PDNENSPEIPVKVLNCDTITQVKEKILDAVYKNVPYSQRPRAVDMDLEWRQGRIARVVLQ 78
Query: 374 QHLITNKL 381
IT K+
Sbjct: 79 DEDITTKI 86
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174
V +G N GKSS++N + K+A VS+ T
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKT 58
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 144 IIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM 198
++G AGKS+ N ++G KV + + K+ T E K +T++ + DTPG+
Sbjct: 34 LVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-ETELVVVDTPGIF 89
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164
S + +IG PN GKS+I N + G V
Sbjct: 4 SYEIALIGNPNVGKSTIFNALTGENV 29
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164
S + +IG PN GKS+I N + G V
Sbjct: 7 SYEIALIGNPNVGKSTIFNALTGENV 32
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164
S + +IG PN GKS+I N + G V
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGENV 28
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 139 SVAVGIIGAPNAGKSSIINYMVGTKV 164
S + +IG PN GKS+I N + G V
Sbjct: 3 SYEIALIGNPNVGKSTIFNALTGENV 28
>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
Length = 627
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYS----IEHRLIDWKDLRDGSLRIE 373
P SE + +V+ S+ +++LLD V++ IPYS E ++W+ R + ++
Sbjct: 241 PESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQ 300
Query: 374 QHLITNKL 381
IT K+
Sbjct: 301 DEDITTKI 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,837,683
Number of Sequences: 62578
Number of extensions: 395087
Number of successful extensions: 1056
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 63
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)