Query 014461
Match_columns 424
No_of_seqs 626 out of 4392
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1159 Era GTPase [General fu 100.0 1.3E-63 2.8E-68 457.9 32.6 279 136-424 3-281 (298)
2 PRK15494 era GTPase Era; Provi 100.0 2.9E-55 6.2E-60 427.7 34.5 276 137-424 50-325 (339)
3 TIGR00436 era GTP-binding prot 100.0 2.2E-54 4.7E-59 410.5 33.6 270 140-421 1-270 (270)
4 PRK00089 era GTPase Era; Revie 100.0 1.3E-52 2.8E-57 403.4 35.1 276 137-424 3-278 (292)
5 KOG1423 Ras-like GTPase ERA [C 100.0 9.6E-53 2.1E-57 382.6 29.1 285 134-423 67-379 (379)
6 PRK12298 obgE GTPase CgtA; Rev 99.9 5.4E-26 1.2E-30 224.7 20.3 198 140-344 160-362 (390)
7 TIGR03156 GTP_HflX GTP-binding 99.9 2.9E-25 6.3E-30 217.1 16.8 246 53-313 65-350 (351)
8 COG2262 HflX GTPases [General 99.9 6.3E-25 1.4E-29 210.1 14.4 255 48-316 63-357 (411)
9 PRK11058 GTPase HflX; Provisio 99.9 1.3E-24 2.7E-29 217.4 16.3 250 53-315 73-362 (426)
10 COG1160 Predicted GTPases [Gen 99.9 3.3E-24 7.1E-29 208.3 17.5 162 140-315 4-165 (444)
11 PF02421 FeoB_N: Ferrous iron 99.9 4.5E-25 9.6E-30 189.6 9.9 156 140-310 1-156 (156)
12 COG0486 ThdF Predicted GTPase 99.9 2E-23 4.3E-28 203.4 22.1 166 135-317 213-378 (454)
13 COG1160 Predicted GTPases [Gen 99.9 2.1E-23 4.5E-28 202.7 19.5 172 137-315 176-351 (444)
14 PRK03003 GTP-binding protein D 99.9 2.9E-22 6.2E-27 204.6 22.3 244 45-316 117-383 (472)
15 TIGR03594 GTPase_EngA ribosome 99.9 8.5E-22 1.8E-26 199.6 21.8 243 45-315 78-344 (429)
16 PRK00093 GTP-binding protein D 99.9 2.9E-21 6.3E-26 196.0 23.0 171 137-315 171-344 (435)
17 cd04163 Era Era subfamily. Er 99.9 4.9E-21 1.1E-25 167.1 19.8 167 138-314 2-168 (168)
18 KOG0092 GTPase Rab5/YPT51 and 99.9 1.3E-21 2.9E-26 168.3 15.0 167 138-319 4-171 (200)
19 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-21 4.7E-26 188.4 18.4 169 139-316 158-329 (335)
20 cd01898 Obg Obg subfamily. Th 99.9 2.4E-21 5.2E-26 170.7 16.1 165 141-313 2-169 (170)
21 cd01894 EngA1 EngA1 subfamily. 99.9 3.9E-21 8.5E-26 166.7 16.9 157 143-314 1-157 (157)
22 cd01878 HflX HflX subfamily. 99.9 3.2E-20 6.9E-25 169.0 23.2 165 136-314 38-204 (204)
23 PRK09518 bifunctional cytidyla 99.9 7.5E-21 1.6E-25 202.9 21.5 171 138-316 449-622 (712)
24 PRK05291 trmE tRNA modificatio 99.9 2.1E-20 4.6E-25 189.0 23.6 159 137-316 213-371 (449)
25 cd01897 NOG NOG1 is a nucleola 99.9 9E-21 2E-25 166.8 18.0 167 140-314 1-167 (168)
26 cd01864 Rab19 Rab19 subfamily. 99.9 6.4E-21 1.4E-25 167.4 16.5 161 139-314 3-165 (165)
27 cd04112 Rab26 Rab26 subfamily. 99.9 5.3E-21 1.1E-25 172.4 16.3 167 140-322 1-170 (191)
28 cd01865 Rab3 Rab3 subfamily. 99.9 7.1E-21 1.5E-25 167.3 16.2 160 140-315 2-163 (165)
29 cd04142 RRP22 RRP22 subfamily. 99.9 1.1E-20 2.5E-25 171.0 17.0 170 140-317 1-176 (198)
30 cd04122 Rab14 Rab14 subfamily. 99.9 9.3E-21 2E-25 166.7 15.5 158 140-314 3-163 (166)
31 cd04140 ARHI_like ARHI subfami 99.9 9.8E-21 2.1E-25 166.4 15.5 159 140-313 2-163 (165)
32 PRK03003 GTP-binding protein D 99.9 1.4E-20 3E-25 192.3 18.8 164 138-316 37-200 (472)
33 TIGR02729 Obg_CgtA Obg family 99.9 1.2E-20 2.5E-25 183.1 17.4 169 138-314 156-328 (329)
34 cd01895 EngA2 EngA2 subfamily. 99.9 4.1E-20 8.9E-25 162.7 18.9 168 139-313 2-173 (174)
35 cd04171 SelB SelB subfamily. 99.9 3.2E-20 7E-25 162.2 17.7 155 141-312 2-163 (164)
36 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.1E-20 4.5E-25 164.3 16.5 161 139-315 2-164 (166)
37 cd04120 Rab12 Rab12 subfamily. 99.9 2.3E-20 5E-25 169.2 17.2 159 141-316 2-164 (202)
38 PLN03071 GTP-binding nuclear p 99.9 4.1E-20 8.9E-25 170.1 19.0 195 137-349 11-214 (219)
39 cd01866 Rab2 Rab2 subfamily. 99.9 1.6E-20 3.4E-25 165.6 15.5 162 139-315 4-166 (168)
40 cd01867 Rab8_Rab10_Rab13_like 99.9 1.6E-20 3.4E-25 165.4 15.4 160 139-314 3-164 (167)
41 cd01861 Rab6 Rab6 subfamily. 99.9 2.2E-20 4.8E-25 163.0 16.3 159 140-314 1-161 (161)
42 cd04164 trmE TrmE (MnmE, ThdF, 99.9 4.2E-20 9.2E-25 160.0 17.5 156 139-314 1-156 (157)
43 PRK12297 obgE GTPase CgtA; Rev 99.8 3.2E-20 6.8E-25 184.6 18.7 168 140-318 159-330 (424)
44 cd04145 M_R_Ras_like M-Ras/R-R 99.8 2.6E-20 5.5E-25 163.0 16.0 159 139-314 2-163 (164)
45 cd04136 Rap_like Rap-like subf 99.8 2.1E-20 4.6E-25 163.4 15.5 158 140-314 2-162 (163)
46 TIGR03594 GTPase_EngA ribosome 99.8 2.3E-20 5E-25 189.1 17.9 161 141-316 1-161 (429)
47 cd01868 Rab11_like Rab11-like. 99.8 3.1E-20 6.7E-25 163.0 16.2 160 139-314 3-164 (165)
48 smart00173 RAS Ras subfamily o 99.8 2.6E-20 5.7E-25 163.1 15.1 159 140-315 1-162 (164)
49 PRK12296 obgE GTPase CgtA; Rev 99.8 3.8E-20 8.2E-25 186.2 18.0 171 138-316 158-341 (500)
50 cd01860 Rab5_related Rab5-rela 99.8 3.7E-20 8.1E-25 161.9 15.5 160 140-314 2-162 (163)
51 cd04175 Rap1 Rap1 subgroup. T 99.8 3.9E-20 8.4E-25 162.2 15.7 158 140-314 2-162 (164)
52 smart00175 RAB Rab subfamily o 99.8 4.9E-20 1.1E-24 161.1 16.1 160 140-315 1-162 (164)
53 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 3.4E-20 7.3E-25 164.3 15.1 161 139-316 2-165 (172)
54 cd04144 Ras2 Ras2 subfamily. 99.8 2.1E-20 4.5E-25 168.4 13.7 158 141-315 1-163 (190)
55 cd04121 Rab40 Rab40 subfamily. 99.8 7.6E-20 1.6E-24 164.2 17.1 161 138-316 5-168 (189)
56 cd04113 Rab4 Rab4 subfamily. 99.8 3.8E-20 8.2E-25 161.7 14.8 158 140-313 1-160 (161)
57 cd04109 Rab28 Rab28 subfamily. 99.8 5.6E-20 1.2E-24 168.9 16.4 161 140-316 1-167 (215)
58 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 6.9E-20 1.5E-24 166.5 16.7 162 140-316 1-169 (201)
59 cd04119 RJL RJL (RabJ-Like) su 99.8 5.8E-20 1.3E-24 161.1 15.2 159 140-314 1-166 (168)
60 cd04117 Rab15 Rab15 subfamily. 99.8 1.2E-19 2.6E-24 158.9 16.7 158 140-313 1-160 (161)
61 cd04133 Rop_like Rop subfamily 99.8 8E-20 1.7E-24 162.2 15.7 159 140-315 2-173 (176)
62 cd04158 ARD1 ARD1 subfamily. 99.8 1.1E-19 2.3E-24 160.5 16.3 159 141-319 1-165 (169)
63 cd04138 H_N_K_Ras_like H-Ras/N 99.8 8.9E-20 1.9E-24 158.9 15.5 157 140-314 2-161 (162)
64 cd01890 LepA LepA subfamily. 99.8 6.9E-20 1.5E-24 163.0 15.0 155 141-315 2-177 (179)
65 cd04125 RabA_like RabA-like su 99.8 8.2E-20 1.8E-24 164.1 15.5 161 140-316 1-163 (188)
66 KOG0084 GTPase Rab1/YPT1, smal 99.8 7E-20 1.5E-24 158.3 14.0 163 137-316 7-173 (205)
67 cd01874 Cdc42 Cdc42 subfamily. 99.8 1.3E-19 2.9E-24 161.0 16.2 158 140-314 2-174 (175)
68 cd01881 Obg_like The Obg-like 99.8 5.9E-20 1.3E-24 162.6 13.9 163 144-313 1-175 (176)
69 PRK09518 bifunctional cytidyla 99.8 1.2E-19 2.7E-24 193.6 19.0 164 139-317 275-438 (712)
70 cd04127 Rab27A Rab27a subfamil 99.8 1.2E-19 2.6E-24 161.6 15.9 159 139-314 4-176 (180)
71 PRK00093 GTP-binding protein D 99.8 1.2E-19 2.5E-24 184.3 17.6 160 140-314 2-161 (435)
72 cd04149 Arf6 Arf6 subfamily. 99.8 1.7E-19 3.8E-24 159.1 16.4 155 138-312 8-167 (168)
73 PRK09554 feoB ferrous iron tra 99.8 3.3E-19 7.1E-24 189.8 21.4 167 138-315 2-168 (772)
74 cd00877 Ran Ran (Ras-related n 99.8 9.5E-20 2.1E-24 160.4 14.4 160 140-317 1-161 (166)
75 cd04176 Rap2 Rap2 subgroup. T 99.8 9.8E-20 2.1E-24 159.4 14.4 158 140-314 2-162 (163)
76 TIGR00450 mnmE_trmE_thdF tRNA 99.8 3.8E-19 8.3E-24 179.0 20.5 162 135-315 199-360 (442)
77 cd04126 Rab20 Rab20 subfamily. 99.8 1.5E-19 3.3E-24 165.8 15.9 158 140-315 1-190 (220)
78 PTZ00369 Ras-like protein; Pro 99.8 1.4E-19 3.1E-24 162.7 15.4 161 138-315 4-167 (189)
79 PRK09602 translation-associate 99.8 2.3E-19 5E-24 177.7 18.3 255 140-411 2-367 (396)
80 cd01889 SelB_euk SelB subfamil 99.8 1.8E-19 3.9E-24 162.6 15.8 159 140-316 1-187 (192)
81 COG0218 Predicted GTPase [Gene 99.8 8.2E-19 1.8E-23 153.9 18.9 169 138-315 23-197 (200)
82 PLN03118 Rab family protein; P 99.8 1.7E-19 3.6E-24 165.2 15.1 166 138-318 13-180 (211)
83 PF00009 GTP_EFTU: Elongation 99.8 9.9E-20 2.1E-24 163.7 13.4 158 138-315 2-187 (188)
84 cd01879 FeoB Ferrous iron tran 99.8 2.3E-19 4.9E-24 155.9 15.2 156 144-314 1-156 (158)
85 cd04128 Spg1 Spg1p. Spg1p (se 99.8 2.2E-19 4.8E-24 160.5 15.5 161 140-318 1-169 (182)
86 cd04106 Rab23_lke Rab23-like s 99.8 2.7E-19 5.8E-24 156.3 15.6 157 140-313 1-161 (162)
87 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2E-19 4.3E-24 158.0 14.8 157 141-312 1-166 (167)
88 cd04101 RabL4 RabL4 (Rab-like4 99.8 3.3E-19 7.2E-24 156.2 16.0 159 140-314 1-163 (164)
89 PRK00454 engB GTP-binding prot 99.8 7.7E-19 1.7E-23 158.6 18.8 170 137-316 22-195 (196)
90 cd01863 Rab18 Rab18 subfamily. 99.8 3.1E-19 6.8E-24 155.8 15.6 158 140-313 1-160 (161)
91 cd04110 Rab35 Rab35 subfamily. 99.8 2.9E-19 6.3E-24 162.1 15.9 161 138-315 5-167 (199)
92 cd00154 Rab Rab family. Rab G 99.8 2.2E-19 4.8E-24 155.3 14.5 156 140-311 1-158 (159)
93 TIGR03598 GTPase_YsxC ribosome 99.8 3.6E-19 7.8E-24 158.7 16.2 159 137-304 16-179 (179)
94 cd01862 Rab7 Rab7 subfamily. 99.8 2.9E-19 6.3E-24 157.6 15.5 162 140-316 1-168 (172)
95 PRK04213 GTP-binding protein; 99.8 6.3E-19 1.4E-23 160.0 18.0 163 138-316 8-193 (201)
96 cd04116 Rab9 Rab9 subfamily. 99.8 3.7E-19 8.1E-24 156.9 15.9 160 138-313 4-169 (170)
97 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 2.7E-19 5.9E-24 159.8 15.1 159 138-313 4-178 (182)
98 COG1163 DRG Predicted GTPase [ 99.8 1.1E-18 2.5E-23 161.8 19.6 207 138-411 62-332 (365)
99 KOG1191 Mitochondrial GTPase [ 99.8 1.9E-19 4.2E-24 175.0 15.0 177 135-315 264-450 (531)
100 cd04123 Rab21 Rab21 subfamily. 99.8 4.5E-19 9.7E-24 154.5 16.0 159 140-314 1-161 (162)
101 PLN03110 Rab GTPase; Provision 99.8 5E-19 1.1E-23 162.6 16.8 162 138-315 11-174 (216)
102 cd04154 Arl2 Arl2 subfamily. 99.8 5.5E-19 1.2E-23 156.5 16.3 157 137-312 12-172 (173)
103 cd04124 RabL2 RabL2 subfamily. 99.8 4.6E-19 1E-23 155.1 15.7 157 140-315 1-158 (161)
104 cd01875 RhoG RhoG subfamily. 99.8 4E-19 8.6E-24 160.2 15.6 161 138-315 2-177 (191)
105 smart00174 RHO Rho (Ras homolo 99.8 2.7E-19 5.8E-24 158.4 14.2 156 142-314 1-171 (174)
106 cd01892 Miro2 Miro2 subfamily. 99.8 3.6E-19 7.7E-24 157.2 14.9 161 138-315 3-166 (169)
107 cd04131 Rnd Rnd subfamily. Th 99.8 3.4E-19 7.4E-24 158.7 14.7 157 140-313 2-174 (178)
108 cd04114 Rab30 Rab30 subfamily. 99.8 6.9E-19 1.5E-23 154.9 16.5 161 138-314 6-168 (169)
109 smart00178 SAR Sar1p-like memb 99.8 5.2E-19 1.1E-23 158.4 15.9 158 137-313 15-183 (184)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.8 5.6E-19 1.2E-23 154.4 15.6 154 140-312 1-158 (159)
111 cd01871 Rac1_like Rac1-like su 99.8 4.5E-19 9.7E-24 157.4 15.2 157 140-313 2-173 (174)
112 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 9.6E-19 2.1E-23 153.7 17.1 155 141-314 2-165 (168)
113 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 4.5E-19 9.7E-24 156.8 15.0 159 141-316 2-166 (170)
114 cd04134 Rho3 Rho3 subfamily. 99.8 4.4E-19 9.5E-24 159.6 14.8 160 140-316 1-175 (189)
115 cd00881 GTP_translation_factor 99.8 7.4E-19 1.6E-23 157.2 16.2 157 141-315 1-187 (189)
116 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 6.1E-19 1.3E-23 162.8 15.9 162 138-315 12-188 (232)
117 cd04177 RSR1 RSR1 subgroup. R 99.8 6.5E-19 1.4E-23 155.3 15.4 159 140-314 2-163 (168)
118 cd04146 RERG_RasL11_like RERG/ 99.8 2.2E-19 4.8E-24 157.7 12.3 159 141-314 1-163 (165)
119 cd04132 Rho4_like Rho4-like su 99.8 6.9E-19 1.5E-23 157.8 15.6 160 140-316 1-168 (187)
120 smart00177 ARF ARF-like small 99.8 8.8E-19 1.9E-23 155.7 15.9 158 138-314 12-173 (175)
121 TIGR02528 EutP ethanolamine ut 99.8 5.4E-19 1.2E-23 151.2 14.1 140 141-311 2-141 (142)
122 cd04143 Rhes_like Rhes_like su 99.8 7.7E-19 1.7E-23 164.2 16.3 159 140-314 1-170 (247)
123 cd04157 Arl6 Arl6 subfamily. 99.8 7.7E-19 1.7E-23 153.3 15.2 153 141-312 1-161 (162)
124 cd04111 Rab39 Rab39 subfamily. 99.8 9.4E-19 2E-23 160.2 16.3 162 139-316 2-167 (211)
125 cd04139 RalA_RalB RalA/RalB su 99.8 7E-19 1.5E-23 153.7 14.8 158 140-314 1-161 (164)
126 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 8.2E-19 1.8E-23 151.1 14.4 164 137-318 20-188 (221)
127 cd04166 CysN_ATPS CysN_ATPS su 99.8 3.6E-19 7.7E-24 162.6 13.1 160 141-324 1-196 (208)
128 cd04147 Ras_dva Ras-dva subfam 99.8 9.5E-19 2.1E-23 158.6 15.7 165 141-322 1-170 (198)
129 cd01893 Miro1 Miro1 subfamily. 99.8 9.4E-19 2E-23 154.0 14.9 157 141-314 2-163 (166)
130 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 1.3E-18 2.8E-23 154.4 15.6 155 138-312 14-173 (174)
131 cd04135 Tc10 TC10 subfamily. 99.8 1E-18 2.2E-23 154.6 14.9 158 140-314 1-173 (174)
132 cd00879 Sar1 Sar1 subfamily. 99.8 1.7E-18 3.8E-23 155.6 16.4 158 137-314 17-190 (190)
133 cd04118 Rab24 Rab24 subfamily. 99.8 1.4E-18 3.1E-23 156.6 15.7 160 140-316 1-167 (193)
134 cd04148 RGK RGK subfamily. Th 99.8 1.1E-18 2.4E-23 160.9 15.1 159 140-315 1-163 (221)
135 cd00157 Rho Rho (Ras homology) 99.8 8.4E-19 1.8E-23 154.5 13.7 157 140-312 1-170 (171)
136 cd00876 Ras Ras family. The R 99.8 1.2E-18 2.6E-23 151.5 14.3 156 141-313 1-159 (160)
137 PLN03108 Rab family protein; P 99.8 1.4E-18 3.1E-23 158.9 15.5 161 139-315 6-168 (210)
138 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 2.2E-18 4.9E-23 154.2 16.4 159 139-315 3-170 (183)
139 cd04115 Rab33B_Rab33A Rab33B/R 99.8 2.2E-18 4.8E-23 152.2 16.0 161 139-314 2-168 (170)
140 KOG0078 GTP-binding protein SE 99.8 1.8E-18 3.9E-23 151.8 15.2 162 137-316 10-175 (207)
141 cd04103 Centaurin_gamma Centau 99.8 1.5E-18 3.3E-23 151.4 14.8 152 140-313 1-157 (158)
142 PLN00223 ADP-ribosylation fact 99.8 2.9E-18 6.3E-23 153.2 16.5 159 137-315 15-178 (181)
143 cd04156 ARLTS1 ARLTS1 subfamil 99.8 2.3E-18 5E-23 150.2 15.5 153 141-312 1-159 (160)
144 PRK15467 ethanolamine utilizat 99.8 3.7E-18 7.9E-23 149.0 16.3 144 141-315 3-147 (158)
145 COG0370 FeoB Fe2+ transport sy 99.8 2E-18 4.2E-23 175.4 16.2 165 139-318 3-167 (653)
146 cd01888 eIF2_gamma eIF2-gamma 99.8 2.9E-18 6.2E-23 156.0 15.7 161 140-318 1-202 (203)
147 COG1084 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 155.9 19.8 175 135-317 164-338 (346)
148 PTZ00133 ADP-ribosylation fact 99.8 5.5E-18 1.2E-22 151.5 17.0 159 138-315 16-178 (182)
149 cd04151 Arl1 Arl1 subfamily. 99.8 2E-18 4.4E-23 150.5 13.7 153 141-312 1-157 (158)
150 KOG2485 Conserved ATP/GTP bind 99.8 6.9E-19 1.5E-23 162.6 10.8 168 14-201 17-210 (335)
151 cd04130 Wrch_1 Wrch-1 subfamil 99.8 3E-18 6.5E-23 151.8 14.6 155 140-311 1-170 (173)
152 cd01884 EF_Tu EF-Tu subfamily. 99.8 4.9E-18 1.1E-22 153.1 16.1 148 139-304 2-172 (195)
153 cd01870 RhoA_like RhoA-like su 99.8 4.3E-18 9.2E-23 150.8 15.3 158 140-314 2-174 (175)
154 cd00878 Arf_Arl Arf (ADP-ribos 99.8 6.3E-18 1.4E-22 147.1 15.9 153 141-312 1-157 (158)
155 cd01891 TypA_BipA TypA (tyrosi 99.8 4E-18 8.7E-23 154.0 15.1 147 140-305 3-172 (194)
156 cd01896 DRG The developmentall 99.8 7.8E-18 1.7E-22 156.2 17.0 160 141-314 2-225 (233)
157 KOG0098 GTPase Rab2, small G p 99.8 2.9E-18 6.2E-23 146.5 12.4 159 139-315 6-168 (216)
158 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 3.7E-18 8.1E-23 154.4 13.9 180 140-324 1-194 (196)
159 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 5.9E-18 1.3E-22 155.4 15.3 159 140-315 2-176 (222)
160 PRK09563 rbgA GTPase YlqF; Rev 99.8 2.6E-18 5.6E-23 164.4 13.4 159 23-201 4-180 (287)
161 TIGR00231 small_GTP small GTP- 99.8 1.5E-17 3.2E-22 143.3 16.7 154 140-311 2-160 (161)
162 KOG1489 Predicted GTP-binding 99.8 2.9E-18 6.2E-23 158.4 12.2 167 138-313 195-365 (366)
163 COG1161 Predicted GTPases [Gen 99.8 1.7E-18 3.8E-23 167.5 11.2 159 23-201 14-191 (322)
164 cd04137 RheB Rheb (Ras Homolog 99.8 8.2E-18 1.8E-22 149.8 14.7 161 140-317 2-165 (180)
165 cd04161 Arl2l1_Arl13_like Arl2 99.8 9E-18 1.9E-22 148.0 14.7 153 141-312 1-166 (167)
166 cd04155 Arl3 Arl3 subfamily. 99.8 9.9E-18 2.2E-22 148.2 15.0 157 137-312 12-172 (173)
167 PF00071 Ras: Ras family; Int 99.8 4.7E-18 1E-22 148.5 12.7 157 141-314 1-160 (162)
168 TIGR03596 GTPase_YlqF ribosome 99.8 3.6E-18 7.9E-23 162.5 12.8 158 24-201 2-177 (276)
169 cd01873 RhoBTB RhoBTB subfamil 99.8 7.9E-18 1.7E-22 152.0 14.1 157 139-313 2-194 (195)
170 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 7.4E-18 1.6E-22 148.1 13.5 151 142-312 2-163 (164)
171 KOG0394 Ras-related GTPase [Ge 99.8 7.4E-18 1.6E-22 143.8 12.6 167 137-317 7-180 (210)
172 KOG0080 GTPase Rab18, small G 99.8 5.7E-18 1.2E-22 140.9 11.4 166 138-318 10-177 (209)
173 cd00880 Era_like Era (E. coli 99.8 3.1E-17 6.8E-22 141.4 16.7 158 144-313 1-162 (163)
174 smart00176 RAN Ran (Ras-relate 99.8 8.1E-18 1.8E-22 152.3 13.1 152 145-316 1-155 (200)
175 cd04129 Rho2 Rho2 subfamily. 99.8 1.7E-17 3.8E-22 148.9 14.9 159 140-315 2-173 (187)
176 TIGR00437 feoB ferrous iron tr 99.7 1.6E-17 3.4E-22 173.0 16.0 154 146-314 1-154 (591)
177 PRK12317 elongation factor 1-a 99.7 2.6E-17 5.7E-22 166.3 16.5 154 137-307 4-197 (425)
178 TIGR00487 IF-2 translation ini 99.7 4.3E-17 9.3E-22 169.0 18.0 158 136-312 84-247 (587)
179 PRK05306 infB translation init 99.7 3.5E-17 7.6E-22 173.5 17.4 158 136-312 287-449 (787)
180 PF10662 PduV-EutP: Ethanolami 99.7 3.1E-17 6.8E-22 137.9 13.6 141 140-311 2-142 (143)
181 cd01876 YihA_EngB The YihA (En 99.7 1.2E-16 2.5E-21 139.7 17.9 164 142-314 2-170 (170)
182 PF01926 MMR_HSR1: 50S ribosom 99.7 2.2E-17 4.8E-22 136.3 12.6 116 141-266 1-116 (116)
183 cd04159 Arl10_like Arl10-like 99.7 7.7E-17 1.7E-21 139.4 15.5 153 142-312 2-158 (159)
184 cd01899 Ygr210 Ygr210 subfamil 99.7 1.5E-16 3.2E-21 153.3 19.0 193 142-346 1-300 (318)
185 PRK09866 hypothetical protein; 99.7 3.3E-16 7.1E-21 158.6 21.8 116 187-313 230-351 (741)
186 KOG0087 GTPase Rab11/YPT3, sma 99.7 2.8E-17 6.1E-22 143.6 12.3 162 138-314 13-175 (222)
187 TIGR00475 selB selenocysteine- 99.7 6.1E-17 1.3E-21 168.5 16.7 158 141-316 2-167 (581)
188 KOG2484 GTPase [General functi 99.7 4.6E-18 9.9E-23 161.5 7.0 148 42-201 143-311 (435)
189 CHL00189 infB translation init 99.7 7.7E-17 1.7E-21 169.4 16.3 160 136-314 241-409 (742)
190 TIGR01393 lepA GTP-binding pro 99.7 1.1E-16 2.3E-21 166.8 16.0 159 139-317 3-182 (595)
191 COG0536 Obg Predicted GTPase [ 99.7 7.2E-17 1.6E-21 151.1 12.8 171 140-317 160-335 (369)
192 PF00025 Arf: ADP-ribosylation 99.7 2.6E-16 5.6E-21 139.7 15.6 158 137-313 12-174 (175)
193 cd01886 EF-G Elongation factor 99.7 7.5E-17 1.6E-21 152.5 12.7 154 141-314 1-172 (270)
194 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.9E-16 4.2E-21 145.7 14.9 153 141-312 1-220 (224)
195 PRK10512 selenocysteinyl-tRNA- 99.7 4.6E-16 1E-20 162.5 18.3 157 141-316 2-167 (614)
196 PTZ00132 GTP-binding nuclear p 99.7 3.7E-16 8E-21 143.5 15.4 165 137-319 7-172 (215)
197 KOG0093 GTPase Rab3, small G p 99.7 1.9E-16 4.2E-21 130.0 11.6 163 139-316 21-184 (193)
198 cd01883 EF1_alpha Eukaryotic e 99.7 1.6E-16 3.4E-21 146.4 12.6 147 141-304 1-194 (219)
199 PRK12736 elongation factor Tu; 99.7 4.3E-16 9.4E-21 155.6 16.5 162 136-315 9-201 (394)
200 TIGR00491 aIF-2 translation in 99.7 3.2E-16 7E-21 162.2 16.0 156 138-313 3-214 (590)
201 CHL00071 tufA elongation facto 99.7 3.4E-16 7.3E-21 157.1 15.7 148 137-302 10-180 (409)
202 cd04168 TetM_like Tet(M)-like 99.7 6.2E-16 1.3E-20 143.7 15.6 113 141-271 1-130 (237)
203 PRK12735 elongation factor Tu; 99.7 7.3E-16 1.6E-20 154.0 16.5 163 135-315 8-203 (396)
204 PRK05433 GTP-binding protein L 99.7 5E-16 1.1E-20 162.0 15.6 160 138-317 6-186 (600)
205 cd04178 Nucleostemin_like Nucl 99.7 4.4E-16 9.6E-21 137.3 12.7 143 47-197 1-172 (172)
206 KOG0079 GTP-binding protein H- 99.7 2.1E-16 4.5E-21 129.9 9.7 156 140-314 9-168 (198)
207 TIGR03680 eif2g_arch translati 99.7 1.1E-15 2.4E-20 153.3 16.1 163 137-316 2-197 (406)
208 PLN03127 Elongation factor Tu; 99.7 1.2E-15 2.6E-20 153.9 16.1 160 137-315 59-252 (447)
209 TIGR00483 EF-1_alpha translati 99.7 1.4E-15 3.1E-20 153.7 16.6 153 137-306 5-198 (426)
210 PRK00049 elongation factor Tu; 99.7 1.3E-15 2.9E-20 152.1 15.6 162 136-315 9-203 (396)
211 KOG0086 GTPase Rab4, small G p 99.7 1.2E-15 2.7E-20 126.0 12.2 159 139-314 9-170 (214)
212 cd00882 Ras_like_GTPase Ras-li 99.7 1.5E-15 3.3E-20 129.2 13.2 152 144-311 1-156 (157)
213 TIGR01394 TypA_BipA GTP-bindin 99.7 1.6E-15 3.4E-20 157.7 15.6 159 140-317 2-193 (594)
214 PRK04000 translation initiatio 99.7 1.9E-15 4.1E-20 151.5 15.7 163 137-316 7-202 (411)
215 KOG0091 GTPase Rab39, small G 99.7 1.1E-15 2.3E-20 127.8 11.4 161 138-314 7-172 (213)
216 PRK10218 GTP-binding protein; 99.7 2.7E-15 5.9E-20 155.8 17.1 161 138-317 4-197 (607)
217 KOG0088 GTPase Rab21, small G 99.7 1.5E-16 3.3E-21 132.1 6.1 162 137-316 11-176 (218)
218 PRK09435 membrane ATPase/prote 99.6 6.2E-15 1.3E-19 142.2 17.4 186 136-350 53-295 (332)
219 TIGR00485 EF-Tu translation el 99.6 3.4E-15 7.4E-20 149.3 16.1 161 136-314 9-200 (394)
220 TIGR02034 CysN sulfate adenyly 99.6 2.6E-15 5.7E-20 150.4 15.3 149 140-305 1-187 (406)
221 COG3596 Predicted GTPase [Gene 99.6 7E-15 1.5E-19 134.3 16.3 172 136-316 36-223 (296)
222 KOG0095 GTPase Rab30, small G 99.6 2E-15 4.3E-20 124.3 11.5 158 139-314 7-168 (213)
223 PRK05124 cysN sulfate adenylyl 99.6 5.4E-15 1.2E-19 150.5 17.2 154 136-306 24-216 (474)
224 PRK05506 bifunctional sulfate 99.6 3.1E-15 6.7E-20 158.2 15.9 153 136-305 21-211 (632)
225 cd04170 EF-G_bact Elongation f 99.6 1.6E-15 3.4E-20 144.1 12.0 155 141-315 1-173 (268)
226 cd01856 YlqF YlqF. Proteins o 99.6 2.2E-15 4.7E-20 133.3 12.1 152 25-197 1-170 (171)
227 cd04104 p47_IIGP_like p47 (47- 99.6 4.2E-15 9E-20 134.6 13.7 161 140-316 2-185 (197)
228 KOG0395 Ras-related GTPase [Ge 99.6 6.4E-15 1.4E-19 132.6 14.2 161 138-315 2-165 (196)
229 KOG0073 GTP-binding ADP-ribosy 99.6 1.4E-14 3.1E-19 121.5 15.1 158 138-316 15-179 (185)
230 KOG0410 Predicted GTP binding 99.6 5.2E-15 1.1E-19 137.2 13.6 223 66-315 112-341 (410)
231 PRK04004 translation initiatio 99.6 1E-14 2.3E-19 151.6 17.3 156 137-312 4-215 (586)
232 PLN03126 Elongation factor Tu; 99.6 1.2E-14 2.5E-19 147.5 16.9 149 136-302 78-249 (478)
233 TIGR00484 EF-G translation elo 99.6 2.1E-15 4.5E-20 160.9 11.4 143 138-300 9-171 (689)
234 KOG2423 Nucleolar GTPase [Gene 99.6 1.1E-16 2.4E-21 151.2 1.2 135 42-202 210-367 (572)
235 KOG0462 Elongation factor-type 99.6 1.1E-14 2.5E-19 143.2 14.4 162 137-318 58-238 (650)
236 PRK12739 elongation factor G; 99.6 1E-14 2.2E-19 155.6 15.2 117 138-272 7-140 (691)
237 PRK00741 prfC peptide chain re 99.6 1.8E-14 3.9E-19 148.0 15.8 117 137-271 8-145 (526)
238 cd01885 EF2 EF2 (for archaea a 99.6 2.9E-14 6.4E-19 130.8 15.5 112 141-270 2-138 (222)
239 cd04167 Snu114p Snu114p subfam 99.6 1.5E-14 3.3E-19 132.6 12.9 157 141-315 2-211 (213)
240 PRK00007 elongation factor G; 99.6 9.4E-15 2E-19 155.7 12.9 150 138-307 9-179 (693)
241 COG0532 InfB Translation initi 99.6 4.1E-14 8.8E-19 140.4 16.2 157 137-314 3-169 (509)
242 cd01858 NGP_1 NGP-1. Autoanti 99.6 2.1E-14 4.5E-19 125.2 12.6 128 44-197 7-157 (157)
243 PTZ00141 elongation factor 1- 99.6 2.9E-14 6.3E-19 144.1 15.4 151 137-305 5-203 (446)
244 cd04169 RF3 RF3 subfamily. Pe 99.6 2.8E-14 6.1E-19 134.9 13.6 154 140-315 3-180 (267)
245 PTZ00327 eukaryotic translatio 99.6 3.3E-14 7.1E-19 143.3 14.3 162 137-316 32-234 (460)
246 KOG0083 GTPase Rab26/Rab37, sm 99.6 1.3E-15 2.9E-20 123.0 2.8 165 143-323 1-168 (192)
247 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 2.4E-14 5.2E-19 122.5 10.8 110 43-199 9-140 (141)
248 KOG0097 GTPase Rab14, small G 99.6 6.7E-14 1.5E-18 114.2 12.2 161 138-315 10-173 (215)
249 TIGR00503 prfC peptide chain r 99.5 3.9E-14 8.4E-19 145.6 13.5 162 137-322 9-192 (527)
250 cd01849 YlqF_related_GTPase Yl 99.5 6.5E-14 1.4E-18 121.8 12.9 127 53-197 26-155 (155)
251 PTZ00258 GTP-binding protein; 99.5 1.5E-13 3.2E-18 135.0 16.1 91 137-233 19-126 (390)
252 KOG1145 Mitochondrial translat 99.5 1.6E-13 3.4E-18 135.2 16.0 159 135-314 149-315 (683)
253 KOG0075 GTP-binding ADP-ribosy 99.5 1.1E-13 2.4E-18 113.9 12.3 157 139-314 20-181 (186)
254 COG1100 GTPase SAR1 and relate 99.5 1.8E-13 3.9E-18 125.7 15.4 163 139-315 5-185 (219)
255 cd04105 SR_beta Signal recogni 99.5 1.5E-13 3.3E-18 124.9 14.0 117 141-272 2-124 (203)
256 PRK12289 GTPase RsgA; Reviewed 99.5 3.7E-15 8E-20 145.3 3.4 120 47-202 111-239 (352)
257 cd04102 RabL3 RabL3 (Rab-like3 99.5 2.5E-13 5.5E-18 123.0 15.2 144 140-300 1-175 (202)
258 PRK13351 elongation factor G; 99.5 1E-13 2.2E-18 148.2 14.5 117 138-272 7-140 (687)
259 cd01853 Toc34_like Toc34-like 99.5 3E-13 6.5E-18 126.2 15.8 139 132-272 24-164 (249)
260 COG1162 Predicted GTPases [Gen 99.5 8.7E-15 1.9E-19 136.9 5.0 178 27-248 84-273 (301)
261 cd01882 BMS1 Bms1. Bms1 is an 99.5 4E-13 8.7E-18 124.0 15.3 140 136-301 36-182 (225)
262 PRK09601 GTP-binding protein Y 99.5 2.2E-12 4.8E-17 125.3 20.6 88 140-233 3-107 (364)
263 COG0481 LepA Membrane GTPase L 99.5 1.8E-13 3.9E-18 132.8 12.2 160 138-318 8-189 (603)
264 PTZ00099 rab6; Provisional 99.5 2.8E-13 6E-18 120.3 12.0 119 185-318 27-145 (176)
265 PRK12288 GTPase RsgA; Reviewed 99.5 3.9E-14 8.4E-19 138.2 6.4 174 32-249 129-315 (347)
266 KOG0081 GTPase Rab27, small G 99.5 4.6E-14 9.9E-19 117.5 5.9 156 141-314 11-180 (219)
267 PLN00043 elongation factor 1-a 99.5 7.1E-13 1.5E-17 134.0 15.5 151 137-305 5-203 (447)
268 PF08477 Miro: Miro-like prote 99.5 7.5E-14 1.6E-18 115.5 6.5 115 141-268 1-119 (119)
269 KOG1490 GTP-binding protein CR 99.5 5.8E-13 1.2E-17 130.0 13.0 174 132-312 161-338 (620)
270 KOG0070 GTP-binding ADP-ribosy 99.5 9.1E-13 2E-17 113.6 12.3 161 136-315 14-178 (181)
271 COG2229 Predicted GTPase [Gene 99.5 4.4E-12 9.6E-17 109.2 16.2 159 137-313 8-176 (187)
272 PLN00023 GTP-binding protein; 99.4 1.2E-12 2.6E-17 124.8 13.8 138 136-289 18-189 (334)
273 COG5256 TEF1 Translation elong 99.4 1.4E-12 3E-17 125.6 13.9 164 137-324 5-213 (428)
274 cd01900 YchF YchF subfamily. 99.4 1.2E-12 2.6E-17 123.3 13.0 86 142-233 1-103 (274)
275 PRK12740 elongation factor G; 99.4 9.7E-13 2.1E-17 140.4 13.7 110 145-272 1-127 (668)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.4 2.2E-12 4.7E-17 122.3 14.3 134 134-271 33-167 (313)
277 KOG1424 Predicted GTP-binding 99.4 4.1E-13 8.9E-18 131.7 9.6 154 45-201 174-373 (562)
278 KOG0393 Ras-related small GTPa 99.4 5.6E-13 1.2E-17 117.8 9.5 164 138-317 3-181 (198)
279 TIGR00157 ribosome small subun 99.4 1.1E-12 2.3E-17 122.6 11.3 153 55-249 66-229 (245)
280 COG1703 ArgK Putative periplas 99.4 5.7E-12 1.2E-16 116.7 15.5 194 132-350 44-289 (323)
281 PF03308 ArgK: ArgK protein; 99.4 1.4E-13 3E-18 125.9 4.3 156 134-314 24-229 (266)
282 PRK13768 GTPase; Provisional 99.4 1.4E-12 3.1E-17 122.4 11.2 126 187-317 97-249 (253)
283 cd01850 CDC_Septin CDC/Septin. 99.4 5.8E-12 1.2E-16 119.7 15.4 127 139-272 4-158 (276)
284 PF04548 AIG1: AIG1 family; I 99.4 3.3E-12 7.2E-17 116.9 13.1 173 140-318 1-189 (212)
285 KOG1486 GTP-binding protein DR 99.4 1.1E-11 2.3E-16 111.4 15.1 91 138-234 61-151 (364)
286 cd01859 MJ1464 MJ1464. This f 99.4 5.3E-12 1.1E-16 109.8 11.6 108 62-197 48-156 (156)
287 COG4917 EutP Ethanolamine util 99.4 3.8E-12 8.2E-17 102.3 9.5 143 140-313 2-144 (148)
288 PRK10463 hydrogenase nickel in 99.4 6.7E-12 1.5E-16 118.2 12.8 187 118-314 81-288 (290)
289 PF05049 IIGP: Interferon-indu 99.4 3.3E-11 7E-16 117.3 17.7 164 137-317 33-220 (376)
290 KOG4252 GTP-binding protein [S 99.3 3.5E-13 7.6E-18 114.5 2.3 162 138-315 19-181 (246)
291 KOG1532 GTPase XAB1, interacts 99.3 4.9E-12 1.1E-16 115.0 9.2 132 187-324 116-273 (366)
292 PRK07560 elongation factor EF- 99.3 1.6E-11 3.6E-16 131.7 13.8 117 137-271 18-153 (731)
293 TIGR02836 spore_IV_A stage IV 99.3 2E-11 4.4E-16 118.2 12.9 169 136-314 14-236 (492)
294 KOG0076 GTP-binding ADP-ribosy 99.3 7E-12 1.5E-16 106.4 8.4 163 138-317 16-189 (197)
295 COG3276 SelB Selenocysteine-sp 99.3 3E-11 6.4E-16 117.3 13.8 156 141-314 2-161 (447)
296 KOG1144 Translation initiation 99.3 1.9E-10 4.1E-15 116.9 19.9 219 136-400 472-747 (1064)
297 PRK00098 GTPase RsgA; Reviewed 99.3 2.6E-12 5.7E-17 123.5 6.3 153 55-248 110-273 (298)
298 KOG3883 Ras family small GTPas 99.3 6.7E-11 1.5E-15 98.3 13.6 167 136-316 6-176 (198)
299 cd01855 YqeH YqeH. YqeH is an 99.3 1.8E-11 3.9E-16 110.1 11.2 56 139-197 127-190 (190)
300 KOG0071 GTP-binding ADP-ribosy 99.3 7.2E-11 1.6E-15 96.6 13.3 159 137-315 15-178 (180)
301 TIGR00750 lao LAO/AO transport 99.3 9.6E-11 2.1E-15 112.9 16.6 157 134-315 29-238 (300)
302 cd01854 YjeQ_engC YjeQ/EngC. 99.3 8.2E-12 1.8E-16 119.4 9.1 152 57-249 110-271 (287)
303 PF03193 DUF258: Protein of un 99.3 3.8E-12 8.2E-17 109.7 5.4 93 74-202 2-102 (161)
304 PTZ00416 elongation factor 2; 99.3 3.3E-11 7E-16 130.8 13.5 116 137-270 17-157 (836)
305 PLN00116 translation elongatio 99.3 5.6E-11 1.2E-15 129.2 15.2 117 136-270 16-163 (843)
306 PRK14845 translation initiatio 99.3 6.7E-11 1.4E-15 128.7 15.6 145 150-313 472-671 (1049)
307 smart00053 DYNc Dynamin, GTPas 99.3 3.6E-10 7.9E-15 104.5 18.1 131 138-275 25-210 (240)
308 COG1217 TypA Predicted membran 99.3 3.9E-10 8.4E-15 109.7 18.6 162 138-318 4-198 (603)
309 TIGR00490 aEF-2 translation el 99.3 2.3E-11 4.9E-16 130.4 10.8 117 137-271 17-152 (720)
310 KOG0090 Signal recognition par 99.2 1.8E-10 3.8E-15 101.5 13.4 161 138-313 37-237 (238)
311 PF03029 ATP_bind_1: Conserved 99.2 1.7E-11 3.7E-16 113.7 7.5 120 188-314 92-236 (238)
312 TIGR00993 3a0901s04IAP86 chlor 99.2 1.9E-10 4.2E-15 117.5 15.3 133 135-271 114-250 (763)
313 COG0012 Predicted GTPase, prob 99.2 1.1E-10 2.4E-15 112.0 12.7 89 139-233 2-108 (372)
314 KOG1707 Predicted Ras related/ 99.2 7.8E-11 1.7E-15 117.5 11.6 161 136-315 6-175 (625)
315 PF00350 Dynamin_N: Dynamin fa 99.2 1.4E-10 3E-15 101.9 11.5 113 142-267 1-168 (168)
316 COG5257 GCD11 Translation init 99.2 2.4E-10 5.1E-15 106.4 12.9 165 137-319 8-206 (415)
317 COG2895 CysN GTPases - Sulfate 99.2 1.5E-10 3.3E-15 109.0 11.3 164 138-325 5-206 (431)
318 PF09439 SRPRB: Signal recogni 99.2 1.1E-10 2.5E-15 102.7 9.2 119 139-272 3-127 (181)
319 PRK13796 GTPase YqeH; Provisio 99.2 1.3E-10 2.8E-15 114.8 10.6 123 45-199 72-222 (365)
320 KOG1487 GTP-binding protein DR 99.2 7.2E-11 1.6E-15 106.6 7.4 162 140-315 60-281 (358)
321 KOG0458 Elongation factor 1 al 99.2 4.8E-10 1E-14 112.0 13.9 151 138-305 176-372 (603)
322 KOG0074 GTP-binding ADP-ribosy 99.2 2E-10 4.3E-15 94.2 9.2 161 135-315 13-179 (185)
323 TIGR00073 hypB hydrogenase acc 99.2 4.8E-10 1E-14 102.3 12.9 56 258-313 149-205 (207)
324 COG0480 FusA Translation elong 99.1 3.5E-10 7.6E-15 118.8 13.0 133 136-288 7-157 (697)
325 TIGR00101 ureG urease accessor 99.1 5.3E-10 1.2E-14 101.1 12.5 82 223-314 113-195 (199)
326 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 8E-10 1.7E-14 101.6 13.6 167 141-316 1-177 (232)
327 KOG1673 Ras GTPases [General f 99.1 6.4E-10 1.4E-14 92.7 11.1 167 138-322 19-193 (205)
328 COG4108 PrfC Peptide chain rel 99.1 3.5E-10 7.6E-15 109.3 10.7 116 138-271 11-147 (528)
329 KOG0461 Selenocysteine-specifi 99.1 2.5E-09 5.4E-14 100.4 15.2 161 138-316 6-194 (522)
330 KOG0072 GTP-binding ADP-ribosy 99.1 3E-10 6.5E-15 93.5 7.7 156 138-315 17-179 (182)
331 KOG2486 Predicted GTPase [Gene 99.1 4.5E-10 9.8E-15 102.8 9.2 170 136-314 133-315 (320)
332 TIGR03597 GTPase_YqeH ribosome 99.1 9.9E-10 2.1E-14 108.4 12.2 107 62-200 97-217 (360)
333 COG0378 HypB Ni2+-binding GTPa 99.1 8.3E-10 1.8E-14 96.6 10.2 55 260-314 145-200 (202)
334 KOG0077 Vesicle coat complex C 99.1 5.9E-10 1.3E-14 94.1 8.4 157 137-313 18-191 (193)
335 KOG0096 GTPase Ran/TC4/GSP1 (n 99.0 5.1E-09 1.1E-13 90.5 10.9 162 138-318 9-172 (216)
336 COG0050 TufB GTPases - transla 99.0 1.2E-08 2.6E-13 94.1 13.8 162 137-316 10-202 (394)
337 PRK01889 GTPase RsgA; Reviewed 99.0 2.8E-10 6E-15 112.0 3.0 130 32-200 121-260 (356)
338 PF00735 Septin: Septin; Inte 98.9 1.4E-08 3.1E-13 96.5 13.3 127 139-272 4-157 (281)
339 cd01858 NGP_1 NGP-1. Autoanti 98.9 7.1E-09 1.5E-13 90.2 10.2 93 216-314 2-94 (157)
340 KOG4423 GTP-binding protein-li 98.8 1.5E-09 3.3E-14 93.3 0.7 161 140-316 26-195 (229)
341 cd01859 MJ1464 MJ1464. This f 98.7 7.1E-08 1.5E-12 83.7 10.5 88 220-316 10-97 (156)
342 TIGR00092 GTP-binding protein 98.7 2E-08 4.3E-13 98.0 7.6 89 140-233 3-108 (368)
343 KOG0465 Mitochondrial elongati 98.7 5.6E-08 1.2E-12 97.7 9.8 158 137-314 37-212 (721)
344 KOG3905 Dynein light intermedi 98.7 2.6E-07 5.7E-12 86.4 13.4 175 134-322 47-297 (473)
345 KOG1954 Endocytosis/signaling 98.7 2.3E-07 5.1E-12 88.1 12.1 124 138-272 57-226 (532)
346 KOG0464 Elongation factor G [T 98.7 7.7E-08 1.7E-12 92.4 8.7 137 134-290 32-185 (753)
347 COG5019 CDC3 Septin family pro 98.7 6.9E-07 1.5E-11 85.5 15.1 129 137-272 21-177 (373)
348 cd01851 GBP Guanylate-binding 98.7 9.6E-08 2.1E-12 88.1 9.0 91 138-233 6-102 (224)
349 COG5258 GTPBP1 GTPase [General 98.7 3.2E-07 7E-12 87.7 12.4 163 135-317 113-340 (527)
350 KOG0468 U5 snRNP-specific prot 98.6 1.6E-07 3.4E-12 95.1 10.6 117 136-270 125-262 (971)
351 KOG1547 Septin CDC10 and relat 98.6 1.5E-06 3.3E-11 78.1 15.6 126 139-271 46-198 (336)
352 cd01856 YlqF YlqF. Proteins o 98.6 2.9E-07 6.2E-12 81.3 10.3 95 210-315 7-101 (171)
353 PF07650 KH_2: KH domain syndr 98.6 4.4E-08 9.4E-13 74.6 3.9 51 373-424 25-75 (78)
354 KOG2655 Septin family protein 98.6 1.1E-06 2.3E-11 84.9 14.3 129 137-272 19-173 (366)
355 cd01849 YlqF_related_GTPase Yl 98.6 2.9E-07 6.2E-12 79.9 9.4 83 224-314 1-84 (155)
356 TIGR03596 GTPase_YlqF ribosome 98.6 2.7E-07 5.8E-12 88.0 9.8 96 210-316 9-104 (276)
357 cd01855 YqeH YqeH. YqeH is an 98.6 3.9E-07 8.5E-12 81.8 10.2 90 218-316 30-126 (190)
358 TIGR00157 ribosome small subun 98.6 3.5E-07 7.5E-12 85.5 9.7 90 219-314 33-122 (245)
359 KOG1491 Predicted GTP-binding 98.5 1.9E-07 4E-12 88.1 7.1 91 137-233 18-125 (391)
360 PRK10416 signal recognition pa 98.5 4.5E-06 9.8E-11 80.8 16.5 150 138-307 113-302 (318)
361 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.1E-07 1.3E-11 76.6 9.3 82 214-302 3-84 (141)
362 KOG0467 Translation elongation 98.5 7E-07 1.5E-11 91.9 10.2 113 137-269 7-136 (887)
363 TIGR01425 SRP54_euk signal rec 98.5 7.2E-06 1.6E-10 81.9 17.0 122 137-272 98-254 (429)
364 PF05783 DLIC: Dynein light in 98.4 1.9E-06 4.2E-11 87.1 11.8 63 257-320 196-269 (472)
365 KOG0448 Mitofusin 1 GTPase, in 98.4 2.8E-06 6E-11 86.9 12.7 147 137-299 107-310 (749)
366 KOG0466 Translation initiation 98.4 1.1E-06 2.4E-11 81.6 8.5 165 137-318 36-244 (466)
367 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.4E-06 3.1E-11 83.5 9.6 96 210-316 12-107 (287)
368 KOG0460 Mitochondrial translat 98.4 5E-06 1.1E-10 78.5 12.5 161 137-315 52-245 (449)
369 KOG3886 GTP-binding protein [S 98.4 8.7E-07 1.9E-11 79.3 6.7 125 139-272 4-131 (295)
370 TIGR00064 ftsY signal recognit 98.3 3.3E-05 7.2E-10 73.3 17.5 151 137-307 70-260 (272)
371 COG5192 BMS1 GTP-binding prote 98.3 7.9E-06 1.7E-10 81.6 11.9 141 134-299 64-210 (1077)
372 PRK12289 GTPase RsgA; Reviewed 98.2 4.2E-06 9.1E-11 82.0 9.2 88 220-314 87-174 (352)
373 KOG1143 Predicted translation 98.2 6E-06 1.3E-10 78.7 9.7 155 139-310 167-383 (591)
374 PRK14974 cell division protein 98.2 9.8E-05 2.1E-09 71.9 18.0 149 138-307 139-322 (336)
375 cd03112 CobW_like The function 98.2 6.8E-06 1.5E-10 71.5 8.6 70 186-269 86-158 (158)
376 PRK00098 GTPase RsgA; Reviewed 98.2 7.7E-06 1.7E-10 78.8 9.7 88 220-313 78-165 (298)
377 KOG1707 Predicted Ras related/ 98.2 2.1E-05 4.5E-10 79.4 12.8 161 136-316 422-584 (625)
378 TIGR03597 GTPase_YqeH ribosome 98.2 1.2E-05 2.6E-10 79.5 10.8 86 220-313 61-151 (360)
379 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.3E-05 2.9E-10 76.7 9.4 86 220-312 76-161 (287)
380 PRK13796 GTPase YqeH; Provisio 98.1 2.3E-05 5E-10 77.6 11.2 94 213-314 59-158 (365)
381 PRK01889 GTPase RsgA; Reviewed 98.1 1.1E-05 2.5E-10 79.5 8.9 84 220-311 110-193 (356)
382 TIGR03348 VI_IcmF type VI secr 98.0 4.9E-05 1.1E-09 86.1 12.7 127 140-272 112-258 (1169)
383 PRK14722 flhF flagellar biosyn 98.0 0.00012 2.7E-09 72.0 13.8 26 136-161 134-159 (374)
384 PRK12288 GTPase RsgA; Reviewed 97.9 5.8E-05 1.3E-09 74.0 10.5 88 220-314 118-207 (347)
385 KOG1534 Putative transcription 97.9 4.8E-05 1E-09 67.4 8.5 123 187-317 98-223 (273)
386 PF02492 cobW: CobW/HypB/UreG, 97.9 8.5E-06 1.8E-10 72.4 4.0 139 141-293 2-177 (178)
387 PRK12726 flagellar biosynthesi 97.9 0.00023 5E-09 69.7 13.7 147 138-305 205-383 (407)
388 PF00448 SRP54: SRP54-type pro 97.9 0.00013 2.9E-09 65.7 11.3 145 140-305 2-181 (196)
389 cd00066 G-alpha G protein alph 97.9 0.00018 3.9E-09 70.0 13.0 112 182-315 156-276 (317)
390 smart00010 small_GTPase Small 97.9 2.7E-05 5.8E-10 64.1 6.4 114 140-304 1-115 (124)
391 smart00275 G_alpha G protein a 97.9 0.00011 2.3E-09 72.2 11.5 78 182-271 179-265 (342)
392 PRK11889 flhF flagellar biosyn 97.9 9.4E-05 2E-09 72.7 10.9 131 138-282 240-402 (436)
393 PRK12727 flagellar biosynthesi 97.9 0.00039 8.4E-09 71.0 15.2 145 137-303 348-523 (559)
394 COG0523 Putative GTPases (G3E 97.9 0.00024 5.3E-09 68.7 13.2 153 142-308 4-194 (323)
395 KOG0447 Dynamin-like GTP bindi 97.8 0.00091 2E-08 67.1 16.7 82 187-272 412-494 (980)
396 cd03114 ArgK-like The function 97.8 0.00013 2.7E-09 62.8 9.4 20 142-161 2-21 (148)
397 PRK14721 flhF flagellar biosyn 97.8 0.00024 5.1E-09 71.1 12.6 149 137-306 189-369 (420)
398 KOG0463 GTP-binding protein GP 97.8 0.00015 3.2E-09 69.5 10.3 156 139-311 133-354 (641)
399 KOG0459 Polypeptide release fa 97.8 4.5E-05 9.8E-10 73.7 6.9 155 137-308 77-279 (501)
400 PRK00771 signal recognition pa 97.8 0.00049 1.1E-08 69.4 14.0 149 137-306 93-274 (437)
401 PRK14723 flhF flagellar biosyn 97.7 0.00037 8.1E-09 74.2 13.1 151 138-306 184-366 (767)
402 PRK06995 flhF flagellar biosyn 97.7 0.00038 8.3E-09 70.8 12.1 148 138-306 255-434 (484)
403 PRK11537 putative GTP-binding 97.7 0.00033 7.2E-09 68.0 11.2 94 187-296 91-186 (318)
404 COG1419 FlhF Flagellar GTP-bin 97.7 0.00024 5.1E-09 69.8 10.0 129 138-280 202-361 (407)
405 PF09547 Spore_IV_A: Stage IV 97.7 0.0011 2.4E-08 65.2 14.4 169 136-318 14-237 (492)
406 KOG1533 Predicted GTPase [Gene 97.7 2.6E-05 5.6E-10 70.3 2.6 83 186-272 96-178 (290)
407 cd04178 Nucleostemin_like Nucl 97.6 0.00016 3.4E-09 63.9 7.4 58 224-286 1-58 (172)
408 PRK12723 flagellar biosynthesi 97.6 0.0028 6E-08 63.1 16.8 150 138-307 173-356 (388)
409 PRK12724 flagellar biosynthesi 97.6 0.0011 2.5E-08 65.9 13.9 131 138-281 222-383 (432)
410 PRK10867 signal recognition pa 97.6 0.0022 4.7E-08 64.7 15.6 128 137-278 98-261 (433)
411 cd03115 SRP The signal recogni 97.6 0.0019 4.2E-08 56.8 13.4 77 186-276 82-158 (173)
412 COG1618 Predicted nucleotide k 97.6 0.0044 9.6E-08 53.1 14.6 79 220-315 98-176 (179)
413 TIGR02475 CobW cobalamin biosy 97.5 0.0012 2.5E-08 64.8 12.7 109 186-308 92-223 (341)
414 TIGR00959 ffh signal recogniti 97.5 0.0035 7.7E-08 63.1 15.7 80 185-278 181-260 (428)
415 KOG0469 Elongation factor 2 [T 97.5 0.00032 6.8E-09 69.6 7.5 114 137-269 17-162 (842)
416 KOG0082 G-protein alpha subuni 97.4 0.00098 2.1E-08 64.7 10.2 79 181-271 189-276 (354)
417 COG3523 IcmF Type VI protein s 97.4 0.00066 1.4E-08 75.3 10.1 126 140-272 126-271 (1188)
418 PRK05703 flhF flagellar biosyn 97.4 0.00084 1.8E-08 67.8 9.3 145 139-303 221-396 (424)
419 PRK06731 flhF flagellar biosyn 97.3 0.005 1.1E-07 58.2 13.0 146 138-304 74-251 (270)
420 cd02038 FleN-like FleN is a me 97.2 0.002 4.3E-08 54.7 9.0 100 144-270 5-110 (139)
421 COG0552 FtsY Signal recognitio 97.2 0.002 4.3E-08 61.6 9.6 151 136-308 136-328 (340)
422 KOG3859 Septins (P-loop GTPase 97.2 0.0012 2.7E-08 61.0 7.7 129 137-272 40-191 (406)
423 cd03110 Fer4_NifH_child This p 97.1 0.0053 1.1E-07 54.3 10.9 67 185-271 91-157 (179)
424 cd02042 ParA ParA and ParB of 97.1 0.0029 6.2E-08 50.6 8.3 70 142-233 2-72 (104)
425 KOG2484 GTPase [General functi 97.1 0.0023 5.1E-08 62.2 8.7 79 213-297 137-215 (435)
426 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0013 2.8E-08 46.1 4.9 47 221-268 12-58 (58)
427 COG3640 CooC CO dehydrogenase 97.1 0.0016 3.4E-08 59.2 6.8 46 220-270 153-198 (255)
428 KOG2743 Cobalamin synthesis pr 97.0 0.0015 3.4E-08 61.0 6.7 143 137-290 55-243 (391)
429 cd02036 MinD Bacterial cell di 97.0 0.0078 1.7E-07 52.9 11.2 109 144-271 5-128 (179)
430 KOG0780 Signal recognition par 97.0 0.0029 6.3E-08 61.3 7.8 97 133-235 95-226 (483)
431 KOG3887 Predicted small GTPase 96.9 0.0051 1.1E-07 55.9 8.6 118 140-272 28-150 (347)
432 KOG2423 Nucleolar GTPase [Gene 96.9 0.007 1.5E-07 58.8 9.6 95 214-314 205-299 (572)
433 PRK13695 putative NTPase; Prov 96.8 0.049 1.1E-06 47.9 14.4 81 218-314 92-172 (174)
434 cd03111 CpaE_like This protein 96.8 0.0066 1.4E-07 48.9 8.0 94 145-266 6-106 (106)
435 COG1161 Predicted GTPases [Gen 96.8 0.006 1.3E-07 59.4 9.1 85 213-307 25-109 (322)
436 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.011 2.4E-07 45.8 8.1 69 142-234 2-70 (99)
437 KOG1424 Predicted GTP-binding 96.7 0.0072 1.6E-07 60.7 8.4 82 211-299 163-244 (562)
438 COG1162 Predicted GTPases [Gen 96.6 0.013 2.9E-07 55.6 9.4 88 222-314 79-166 (301)
439 KOG0705 GTPase-activating prot 96.5 0.0076 1.6E-07 60.8 7.5 157 138-314 29-188 (749)
440 COG1116 TauB ABC-type nitrate/ 96.4 0.0024 5.2E-08 58.7 3.0 27 137-163 27-53 (248)
441 PHA02518 ParA-like protein; Pr 96.4 0.029 6.2E-07 50.8 9.9 71 185-270 75-146 (211)
442 PF13401 AAA_22: AAA domain; P 96.3 0.0026 5.7E-08 52.9 2.7 25 139-163 4-28 (131)
443 PRK14737 gmk guanylate kinase; 96.3 0.0023 5E-08 57.2 2.3 53 138-192 3-55 (186)
444 PF03266 NTPase_1: NTPase; In 96.3 0.046 1E-06 47.9 10.4 64 222-299 95-159 (168)
445 KOG0781 Signal recognition par 96.3 0.11 2.3E-06 52.1 13.6 81 185-272 465-545 (587)
446 PF13207 AAA_17: AAA domain; P 96.2 0.004 8.7E-08 51.1 3.2 21 141-161 1-21 (121)
447 PF00004 AAA: ATPase family as 96.2 0.019 4.2E-07 47.4 7.3 20 142-161 1-20 (132)
448 PF13555 AAA_29: P-loop contai 96.2 0.004 8.7E-08 44.7 2.6 20 141-160 25-44 (62)
449 CHL00072 chlL photochlorophyll 96.2 0.12 2.6E-06 49.6 13.6 20 141-160 2-21 (290)
450 PF00005 ABC_tran: ABC transpo 96.2 0.0044 9.5E-08 52.1 3.3 28 137-164 9-36 (137)
451 COG3840 ThiQ ABC-type thiamine 96.1 0.0041 8.9E-08 54.4 2.9 27 137-163 23-49 (231)
452 TIGR03263 guanyl_kin guanylate 96.1 0.0049 1.1E-07 54.5 3.5 24 140-163 2-25 (180)
453 PF05621 TniB: Bacterial TniB 96.1 0.049 1.1E-06 51.9 10.2 118 134-266 56-189 (302)
454 COG1136 SalX ABC-type antimicr 96.1 0.0049 1.1E-07 56.4 3.1 27 137-163 29-55 (226)
455 COG0194 Gmk Guanylate kinase [ 96.0 0.0028 6.1E-08 55.7 1.3 53 138-193 3-55 (191)
456 PRK14738 gmk guanylate kinase; 96.0 0.0063 1.4E-07 55.3 3.6 26 137-162 11-36 (206)
457 cd02117 NifH_like This family 95.9 0.058 1.3E-06 49.1 9.7 48 222-270 141-188 (212)
458 PRK00300 gmk guanylate kinase; 95.9 0.0067 1.4E-07 54.9 3.4 25 138-162 4-28 (205)
459 cd02032 Bchl_like This family 95.9 0.046 9.9E-07 51.7 9.3 20 141-160 2-21 (267)
460 cd00071 GMPK Guanosine monopho 95.9 0.0076 1.6E-07 51.0 3.3 21 142-162 2-22 (137)
461 PRK09270 nucleoside triphospha 95.8 0.013 2.8E-07 54.1 5.0 28 135-162 29-56 (229)
462 cd01130 VirB11-like_ATPase Typ 95.7 0.01 2.3E-07 52.9 3.9 26 137-162 23-48 (186)
463 PRK07261 topology modulation p 95.7 0.0074 1.6E-07 53.1 2.8 21 141-161 2-22 (171)
464 PRK13849 putative crown gall t 95.7 0.027 5.8E-07 52.2 6.6 70 185-268 82-151 (231)
465 COG1341 Predicted GTPase or GT 95.7 0.041 8.8E-07 54.1 8.0 26 136-161 70-95 (398)
466 cd00009 AAA The AAA+ (ATPases 95.7 0.034 7.4E-07 46.3 6.8 24 139-162 19-42 (151)
467 COG0563 Adk Adenylate kinase a 95.7 0.0077 1.7E-07 53.4 2.8 23 140-162 1-23 (178)
468 PF02263 GBP: Guanylate-bindin 95.7 0.085 1.8E-06 49.8 9.9 64 136-199 18-86 (260)
469 cd03222 ABC_RNaseL_inhibitor T 95.7 0.0085 1.8E-07 53.1 2.9 27 137-163 23-49 (177)
470 TIGR00235 udk uridine kinase. 95.6 0.0085 1.8E-07 54.5 2.9 26 137-162 4-29 (207)
471 cd03238 ABC_UvrA The excision 95.6 0.0092 2E-07 52.8 3.0 26 136-161 18-43 (176)
472 COG1120 FepC ABC-type cobalami 95.6 0.0095 2.1E-07 55.6 3.1 25 137-161 26-50 (258)
473 PRK08118 topology modulation p 95.6 0.0091 2E-07 52.4 2.8 22 140-161 2-23 (167)
474 PF07015 VirC1: VirC1 protein; 95.6 0.051 1.1E-06 49.8 7.7 103 186-308 83-187 (231)
475 COG1126 GlnQ ABC-type polar am 95.6 0.011 2.3E-07 53.4 3.1 27 137-163 26-52 (240)
476 PF13671 AAA_33: AAA domain; P 95.6 0.0099 2.2E-07 50.2 2.9 20 142-161 2-21 (143)
477 cd02019 NK Nucleoside/nucleoti 95.5 0.011 2.3E-07 43.6 2.7 21 142-162 2-22 (69)
478 cd03225 ABC_cobalt_CbiO_domain 95.5 0.011 2.3E-07 53.8 3.2 27 137-163 25-51 (211)
479 cd02037 MRP-like MRP (Multiple 95.5 0.072 1.6E-06 46.6 8.4 111 143-270 4-134 (169)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.5 0.011 2.3E-07 54.1 3.2 27 137-163 28-54 (218)
481 cd03261 ABC_Org_Solvent_Resist 95.5 0.011 2.3E-07 54.9 3.2 27 137-163 24-50 (235)
482 cd03264 ABC_drug_resistance_li 95.5 0.0099 2.2E-07 54.1 2.9 24 138-162 25-48 (211)
483 TIGR00960 3a0501s02 Type II (G 95.5 0.011 2.3E-07 54.0 3.1 27 137-163 27-53 (216)
484 KOG0085 G protein subunit Galp 95.4 0.046 9.9E-07 49.5 6.7 27 134-160 34-60 (359)
485 PRK08233 hypothetical protein; 95.4 0.012 2.6E-07 51.9 3.2 25 138-162 2-26 (182)
486 TIGR01166 cbiO cobalt transpor 95.4 0.012 2.6E-07 52.5 3.2 27 137-163 16-42 (190)
487 cd03226 ABC_cobalt_CbiO_domain 95.4 0.012 2.7E-07 53.2 3.1 27 137-163 24-50 (205)
488 KOG0446 Vacuolar sorting prote 95.4 0.0075 1.6E-07 63.9 1.9 28 137-164 27-54 (657)
489 PF13521 AAA_28: AAA domain; P 95.4 0.0088 1.9E-07 52.0 2.1 22 141-162 1-22 (163)
490 TIGR02673 FtsE cell division A 95.4 0.013 2.7E-07 53.5 3.1 27 137-163 26-52 (214)
491 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.013 2.9E-07 49.9 3.1 27 137-163 24-50 (144)
492 cd00820 PEPCK_HprK Phosphoenol 95.4 0.015 3.2E-07 46.8 3.1 23 138-160 14-36 (107)
493 cd03265 ABC_DrrA DrrA is the A 95.4 0.013 2.8E-07 53.7 3.2 26 137-162 24-49 (220)
494 COG1121 ZnuC ABC-type Mn/Zn tr 95.4 0.013 2.8E-07 54.5 3.1 25 137-161 28-52 (254)
495 PRK15177 Vi polysaccharide exp 95.3 0.013 2.9E-07 53.5 3.1 27 137-163 11-37 (213)
496 cd03259 ABC_Carb_Solutes_like 95.3 0.014 3E-07 53.2 3.2 26 137-162 24-49 (213)
497 cd03224 ABC_TM1139_LivF_branch 95.3 0.014 3.1E-07 53.4 3.3 27 137-163 24-50 (222)
498 PRK05480 uridine/cytidine kina 95.3 0.013 2.8E-07 53.3 2.9 26 137-162 4-29 (209)
499 cd03262 ABC_HisP_GlnQ_permease 95.3 0.014 3E-07 53.1 3.2 27 137-163 24-50 (213)
500 TIGR03608 L_ocin_972_ABC putat 95.3 0.014 3E-07 52.8 3.1 27 137-163 22-48 (206)
No 1
>COG1159 Era GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-63 Score=457.89 Aligned_cols=279 Identities=30% Similarity=0.471 Sum_probs=260.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++..|+++|.||||||||+|+|+|.+.+.++++++|||+...++++.++.|++|+||||++.++. .....+.+.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~----~l~~~m~~~ 78 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH----ALGELMNKA 78 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----HHHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999998754 333678899
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
++..+.++|+++||+|+++++...+..+.+.++.. +.|+++++||+|...+...+.+..+.+.....|..++++
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~------~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT------KTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc------CCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence 99999999999999999988888888888777762 378999999999998755467888888888889899999
Q ss_pred ecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEE
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH 375 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~ 375 (424)
||++|.|++.|.+.+.+++++++|.||++..||.+++++++|++||+++..+++|+||++.+.+++|++.+++.++|.+.
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I~a~ 232 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKIHAT 232 (298)
T ss_pred eccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 376 i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
|+|+|+|||+|||||+|++||+||+.||++|+++|+|+|||+|||||++
T Consensus 233 I~Ver~sQK~IiIGk~G~~iK~IG~~AR~~ie~l~~~kV~L~L~VKVk~ 281 (298)
T COG1159 233 IYVERESQKGIIIGKNGAMIKKIGTAARKDIEKLLGCKVYLELWVKVKK 281 (298)
T ss_pred EEEecCCccceEECCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcc
Confidence 9999999999999999999999999999999999999999999999985
No 2
>PRK15494 era GTPase Era; Provisional
Probab=100.00 E-value=2.9e-55 Score=427.73 Aligned_cols=276 Identities=30% Similarity=0.544 Sum_probs=238.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.+|||||||+|+|++.+++.+++.++||++...+.+..++.++.||||||+..+... ....+.+.+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~----l~~~~~r~~ 125 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS----LEKAMVRCA 125 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc----HHHHHHHHH
Confidence 3567999999999999999999999999888999999998888888888899999999999754321 223456777
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+..+..+|++++|+|+++.+...+..+.+.+... +.|.++|+||+|+... ...+..+.+.....+..+|++|
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~------~~p~IlViNKiDl~~~--~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL------NIVPIFLLNKIDIESK--YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEEhhcCccc--cHHHHHHHHHhcCCCcEEEEEe
Confidence 7788999999999998765555444444444432 2567889999999653 2334444444444456799999
Q ss_pred cCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEE
Q 014461 297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHL 376 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i 376 (424)
|++|.|+++++++|.+.++++||.||+++.|+.+++++++|+|||+++..+++|+||++++.++.|++..++.++|.+.|
T Consensus 198 Aktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i~~~~~~~~~~~~i~~~i 277 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQTEKWEDLKDKSVKINQVI 277 (339)
T ss_pred ccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEEEEEEEcCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776789999999
Q ss_pred EeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 377 ITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 377 ~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
+|+|+|||+||||++|++||+||++||++|+++|+|+|||+|||||++
T Consensus 278 ~v~~~sqk~iiiG~~g~~ik~i~~~ar~~le~~~~~~v~l~l~Vkv~~ 325 (339)
T PRK15494 278 VVSRESYKTIILGKNGSKIKEIGAKSRMQMERFFGFPVHLFLFVKVRE 325 (339)
T ss_pred EECCCCceeEEEcCCcHHHHHHHHHHHHHHHHHhCCCeEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999985
No 3
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=100.00 E-value=2.2e-54 Score=410.50 Aligned_cols=270 Identities=28% Similarity=0.420 Sum_probs=234.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+|+++|.||||||||+|+|++.+++.+++.++||+....+....++.++.||||||+..... .....+.+.++..
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~----~l~~~~~~~~~~~ 76 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH----SLNRLMMKEARSA 76 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc----hHHHHHHHHHHHH
Confidence 369999999999999999999999988999999999988888777888999999999975421 1223345566777
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|++++|+|+++.... +..+...+... +.|+++|+||+|+... ....+....+....++.+++++||++
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~------~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQNL------KRPVVLTRNKLDNKFK-DKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHhc------CCCEEEEEECeeCCCH-HHHHHHHHHHHhhcCCCceEEEecCC
Confidence 8899999999999864333 23444444432 4789999999999753 44445555666666666799999999
Q ss_pred CcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEee
Q 014461 300 GAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITN 379 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~ 379 (424)
|.|+++|+++|.+.++++||.|+++..++.+.+++++|++||+++..+++|+||++.+.++.|++..++.++|.+.|+|+
T Consensus 149 g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~i~~~i~v~ 228 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSFNEKGLLKIHALISVE 228 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEECCCCeEEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999998776789999999999
Q ss_pred CCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEE
Q 014461 380 KLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVR 421 (424)
Q Consensus 380 ~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vk 421 (424)
|+|||+||||++|++||+||++||++|+++|+|+|||+||||
T Consensus 229 ~~s~k~iiig~~g~~ik~i~~~ar~~l~~~~~~~v~l~l~vk 270 (270)
T TIGR00436 229 RESQKKIIIGKNGSMIKAIGIAARKDILELFDCDVFLELFVK 270 (270)
T ss_pred cCCceeEEEcCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEC
Confidence 999999999999999999999999999999999999999997
No 4
>PRK00089 era GTPase Era; Reviewed
Probab=100.00 E-value=1.3e-52 Score=403.40 Aligned_cols=276 Identities=30% Similarity=0.521 Sum_probs=241.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++..|+++|.||||||||+|+|+|.+.+.+++.++||+....+....++.++.++||||+..+.. .....+...+
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~----~l~~~~~~~~ 78 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR----ALNRAMNKAA 78 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh----HHHHHHHHHH
Confidence 467889999999999999999999999999999999999988888777778999999999876532 1112345556
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+..+..+|++++|+|+++.++..+..+.+.+... +.|+++|+||+|+......+....+.+....++.+++++|
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~------~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV------KTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc------CCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec
Confidence 6678899999999999875555555555555421 4789999999999855456666777777766777899999
Q ss_pred cCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEE
Q 014461 297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHL 376 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i 376 (424)
|++|.|+++|+++|.+.+++++|.|++...++.+.++++.|++||+++..+++|+||++++.++.|++. +.++|.+.|
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~~~--~~~~i~~~i 230 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFEER--GLVRIEATI 230 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEEEC--CeEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999985 789999999
Q ss_pred EeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 377 ITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 377 ~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
+|+++|||+||||++|++||+||+.||++|+++|+|+|||+|||||++
T Consensus 231 ~v~~~~~k~i~ig~~g~~i~~i~~~ar~~l~~~~~~~v~l~l~vkv~~ 278 (292)
T PRK00089 231 YVERDSQKGIIIGKGGAMLKKIGTEARKDIEKLLGKKVFLELWVKVKK 278 (292)
T ss_pred EEccCCceeEEEeCCcHHHHHHHHHHHHHHHHHhCCCEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999986
No 5
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-53 Score=382.63 Aligned_cols=285 Identities=43% Similarity=0.687 Sum_probs=255.3
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
++..+..+|+++|.||||||||.|.++|.+++.++.+.+||++...++++.+..+++|+||||.........+.......
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999887766666666667
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH---------------
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK--------------- 278 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~--------------- 278 (424)
...|..+..||++++|+|++..-......++..++++. ..|-++|+||+|....+..+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys-----~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYS-----KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHh-----cCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 78888999999999999998644445567888888876 5889999999998876433322
Q ss_pred -HHHHHhc------------CCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHh
Q 014461 279 -VAEQFKH------------LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLD 345 (424)
Q Consensus 279 -~~~~~~~------------~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~ 345 (424)
..+.+.. +.+|..+|++||++|+||++|.+||..+++.+||.|+.++.+++.+++++.|++||++++
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e~VReklLd 301 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSESVREKLLD 301 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHHHHHHHHHh
Confidence 2222222 234668999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEe
Q 014461 346 HVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 423 (424)
Q Consensus 346 ~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~ 423 (424)
++.+|+||.+++++..|++..+|.+.|..++.|++.||++++||++|..|++||++|+.+|+++|+|+|+|+|.||++
T Consensus 302 ~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~a~~dL~~if~r~V~l~l~Vk~k 379 (379)
T KOG1423|consen 302 HLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTRANEDLEDIFQRKVFLRLSVKLK 379 (379)
T ss_pred hCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHHHHHHHHHHhhceeeEEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=5.4e-26 Score=224.69 Aligned_cols=198 Identities=26% Similarity=0.318 Sum_probs=148.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..|+++|.||||||||+|+|++.+. .++++|+||+....+++...+. .+.|+||||+......- .......+.
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~-----~~Lg~~~l~ 233 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG-----AGLGIRFLK 233 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch-----hhHHHHHHH
Confidence 4699999999999999999998775 7899999999999999887654 59999999997543210 011233345
Q ss_pred hcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC-eEEE
Q 014461 219 AVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE-RIFM 294 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~ 294 (424)
.+..+|++++|+|++.. ..........+++++.... ....|+++|+||+|+... ..+.+.++.+.+..+.. .+++
T Consensus 234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~-~el~~~l~~l~~~~~~~~~Vi~ 312 (390)
T PRK12298 234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE-EEAEERAKAIVEALGWEGPVYL 312 (390)
T ss_pred HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh-HHHHHHHHHHHHHhCCCCCEEE
Confidence 67889999999998621 0122222233333332211 124789999999999754 33444455554443432 5899
Q ss_pred EecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHH
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLL 344 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~ 344 (424)
+||+++.|+++|+++|.+.++..++.|+++..++.+.+++++|++||++.
T Consensus 313 ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~~ 362 (390)
T PRK12298 313 ISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLE 362 (390)
T ss_pred EECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999986
No 7
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=2.9e-25 Score=217.10 Aligned_cols=246 Identities=20% Similarity=0.335 Sum_probs=167.6
Q ss_pred CCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH------------------------
Q 014461 53 SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE------------------------ 104 (424)
Q Consensus 53 ~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~------------------------ 104 (424)
.++...++.+++++.+..++.+.|...+.|++..| ||... |++++.|++.++
T Consensus 65 ~~~~~vi~~~~l~p~q~~nl~~~~~~~v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~~~~~~l~~~~~~i~~ 144 (351)
T TIGR03156 65 LEADLVIFDHELSPSQERNLEKALGCRVIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLVGGWTHLSRQGGGIGT 144 (351)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHhCCcccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhhhhHHHHHhhcCCCCC
Confidence 35555556666777788899999999999998887 78777 888888877332
Q ss_pred ------HHHHHHHHH--HHHHHHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce
Q 014461 105 ------EEERKHRAL--AKALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174 (424)
Q Consensus 105 ------~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt 174 (424)
..+..++.+ ....++..++....+....+. .....++|+++|+||||||||+|+|++.. ..+.+.+++|
T Consensus 145 ~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT 223 (351)
T TIGR03156 145 RGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFAT 223 (351)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccc
Confidence 112222222 122233333333333222222 22355899999999999999999999987 4567888888
Q ss_pred eeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhcc
Q 014461 175 THEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGK 252 (424)
Q Consensus 175 ~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~ 252 (424)
.+.....+.. ++.++.+|||||+... .+ ......+..++..+..+|++++|+|++++..... ..+..++..+..
T Consensus 224 ~d~~~~~i~~~~~~~i~l~DT~G~~~~---l~-~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~ 299 (351)
T TIGR03156 224 LDPTTRRLDLPDGGEVLLTDTVGFIRD---LP-HELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGA 299 (351)
T ss_pred cCCEEEEEEeCCCceEEEEecCccccc---CC-HHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhcc
Confidence 8887766665 5678999999998542 22 2333447777888899999999999986543222 233455655542
Q ss_pred CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 253 ~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.+.|+++|+||+|+.... ... .+.. ...+++++||++|.|+++|+++|.+.
T Consensus 300 ---~~~piIlV~NK~Dl~~~~-~v~----~~~~--~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 300 ---EDIPQLLVYNKIDLLDEP-RIE----RLEE--GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---CCCCEEEEEEeecCCChH-hHH----HHHh--CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 247899999999997532 221 1111 12348999999999999999999764
No 8
>COG2262 HflX GTPases [General function prediction only]
Probab=99.92 E-value=6.3e-25 Score=210.09 Aligned_cols=255 Identities=20% Similarity=0.293 Sum_probs=189.4
Q ss_pred EEEEeCCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH-------------------
Q 014461 48 SVFDSSYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE------------------- 104 (424)
Q Consensus 48 ~vie~~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~------------------- 104 (424)
-+++..++.+.++.+.+.+.+..|+.+.+...+.|+...| ||... +.+|+.|++.++
T Consensus 63 ~~v~~~~ad~VIf~~~LsP~Q~~NLe~~l~~kVIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~G 142 (411)
T COG2262 63 EAVEETGADLVIFDHELSPSQLRNLEKELGVKVIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLG 142 (411)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHHHHCCEEEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhHhhhhhccccc
Confidence 4455667777777788888888999999999999999888 78887 899999888333
Q ss_pred -----------HHHHHHHHHH--HHHHHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCCcceeecC
Q 014461 105 -----------EEERKHRALA--KALLQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR 169 (424)
Q Consensus 105 -----------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~ 169 (424)
+.+.+++.+. ..-++..|+..+.+++..+. .....+.|+++|++|+|||||+|+|++.... +.+
T Consensus 143 ggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d 221 (411)
T COG2262 143 GGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVY-VAD 221 (411)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccCee-ccc
Confidence 3445555553 44556777776655554443 3456789999999999999999999987765 466
Q ss_pred CCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC-chHHHHHHH
Q 014461 170 KTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-PDSRVIRLI 247 (424)
Q Consensus 170 ~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~-~~~~~~~~l 247 (424)
...+|.++....+.. ++.++.+.||.||... +++ .+...++.+++....+|++++|+|++++... ....+.+.|
T Consensus 222 ~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~---LP~-~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL 297 (411)
T COG2262 222 QLFATLDPTTRRIELGDGRKVLLTDTVGFIRD---LPH-PLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVL 297 (411)
T ss_pred cccccccCceeEEEeCCCceEEEecCccCccc---CCh-HHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHH
Confidence 666776665555444 4788999999999875 454 4457799999999999999999999875221 122466777
Q ss_pred HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.+++.. ..|+|+|+||+|+..+.. . ...+....+ ..+++||++|.|++.|++.|.+.+..
T Consensus 298 ~el~~~---~~p~i~v~NKiD~~~~~~-~---~~~~~~~~~--~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 298 AEIGAD---EIPIILVLNKIDLLEDEE-I---LAELERGSP--NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred HHcCCC---CCCEEEEEecccccCchh-h---hhhhhhcCC--CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 776544 478999999999887532 1 222222222 48999999999999999999998864
No 9
>PRK11058 GTPase HflX; Provisional
Probab=99.92 E-value=1.3e-24 Score=217.35 Aligned_cols=250 Identities=21% Similarity=0.281 Sum_probs=168.9
Q ss_pred CCCCccCCCCCCCCCCCccChhhHHHHHHhcCCeE--EEeec--cccccchhhhHH------------------------
Q 014461 53 SYFRIPTIDDPQNNNAAKKQEPTWDEKYRERTDRI--VFGEE--AQKGKLRIFQEE------------------------ 104 (424)
Q Consensus 53 ~dar~p~~~~~k~Dl~~~~~~~~~~~~~~~~~~~i--~f~~~--~~~~~~~l~~~~------------------------ 104 (424)
.++.+.++.+.+++.+..++.+.|...+.|++..| ||... |.+++.|++.++
T Consensus 73 ~~~~~vi~~~~lsp~q~~nle~~~~~~v~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~~~~~~l~~~~gg~g~ 152 (426)
T PRK11058 73 TGASVVLFDHALSPAQERNLERLCECRVIDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGL 152 (426)
T ss_pred cCCCEEEECCCCCHHHHHHHHHHHCCeEecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhccccchhhhcCCCCC
Confidence 34555555566667788899999999999998887 78877 889999888433
Q ss_pred ------HHHHHHHHHH--HHHHHHHHHhhHHHHHHhh--hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce
Q 014461 105 ------EEERKHRALA--KALLQAALERQEEEEEEVK--EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT 174 (424)
Q Consensus 105 ------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~--~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt 174 (424)
..+.+++.+. ...++..|+....+....+ ......++|+++|.||||||||+|+|++.++. +.+.+++|
T Consensus 153 ~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tT 231 (426)
T PRK11058 153 RGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFAT 231 (426)
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCC
Confidence 2344443332 2223333433322222111 22223468999999999999999999998876 77888888
Q ss_pred eeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhcc
Q 014461 175 THEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGK 252 (424)
Q Consensus 175 ~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~ 252 (424)
.+.....+...+ .++.+|||||+... .++ .....+..++..+..+|++++|+|++++...... .+..++..+..
T Consensus 232 ld~~~~~i~l~~~~~~~l~DTaG~~r~---lp~-~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~ 307 (426)
T PRK11058 232 LDPTLRRIDVADVGETVLADTVGFIRH---LPH-DLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDA 307 (426)
T ss_pred cCCceEEEEeCCCCeEEEEecCccccc---CCH-HHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhcc
Confidence 888766655544 48899999998542 222 2334467777888999999999999865332221 24455665542
Q ss_pred CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 253 QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 253 ~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+.|+++|+||+|+....... ..... .+.+.++++||++|.|+++|+++|.+.+.
T Consensus 308 ---~~~pvIiV~NKiDL~~~~~~~---~~~~~--~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 308 ---HEIPTLLVMNKIDMLDDFEPR---IDRDE--ENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred ---CCCCEEEEEEcccCCCchhHH---HHHHh--cCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 247899999999997531111 11111 23333588999999999999999999874
No 10
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=208.28 Aligned_cols=162 Identities=25% Similarity=0.371 Sum_probs=137.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
..|+++|.||||||||+|+|++.+.+.+++.||+|++...+...+.+..+.++||+|+..... ......+...++.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~---~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE---DELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc---hHHHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999999999999999985421 12234567778888
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..||++|||+|+..+++..+..+.++|... ++|+++|+||+|-...+.. ..+|- ..|+..++++||..
T Consensus 81 i~eADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvvNK~D~~~~e~~----~~efy-slG~g~~~~ISA~H 149 (444)
T COG1160 81 IEEADVILFVVDGREGITPADEEIAKILRRS------KKPVILVVNKIDNLKAEEL----AYEFY-SLGFGEPVPISAEH 149 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEEcccCchhhhh----HHHHH-hcCCCCceEeehhh
Confidence 9999999999999999999999999999853 3899999999998743222 22232 24777899999999
Q ss_pred CcChHHHHHHHHHhcc
Q 014461 300 GAGLKALTQYLMEQAV 315 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~ 315 (424)
|.|+++|++.+.+.++
T Consensus 150 g~Gi~dLld~v~~~l~ 165 (444)
T COG1160 150 GRGIGDLLDAVLELLP 165 (444)
T ss_pred ccCHHHHHHHHHhhcC
Confidence 9999999999999985
No 11
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.5e-25 Score=189.55 Aligned_cols=156 Identities=24% Similarity=0.367 Sum_probs=111.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
++|+++|.||||||||+|+|+|.+ ..++++|++|.+...+.+...+.++.++||||+....... ..+.+...+..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s----~ee~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS----EEERVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS----HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC----cHHHHHHHHHh
Confidence 479999999999999999999999 5589999999999999999899999999999987653211 12233333333
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
....|++++|+|++. + +.+..+...+.+++ .|+++|+||+|+...+.. .-..+.+.+..+.+ ++++||++
T Consensus 76 ~~~~D~ii~VvDa~~-l-~r~l~l~~ql~e~g------~P~vvvlN~~D~a~~~g~-~id~~~Ls~~Lg~p-vi~~sa~~ 145 (156)
T PF02421_consen 76 SEKPDLIIVVVDATN-L-ERNLYLTLQLLELG------IPVVVVLNKMDEAERKGI-EIDAEKLSERLGVP-VIPVSART 145 (156)
T ss_dssp HTSSSEEEEEEEGGG-H-HHHHHHHHHHHHTT------SSEEEEEETHHHHHHTTE-EE-HHHHHHHHTS--EEEEBTTT
T ss_pred hcCCCEEEEECCCCC-H-HHHHHHHHHHHHcC------CCEEEEEeCHHHHHHcCC-EECHHHHHHHhCCC-EEEEEeCC
Confidence 467899999999964 2 22234444455543 899999999998764321 11123333344555 99999999
Q ss_pred CcChHHHHHHH
Q 014461 300 GAGLKALTQYL 310 (424)
Q Consensus 300 g~gi~~L~~~i 310 (424)
|.|+++|++.|
T Consensus 146 ~~g~~~L~~~I 156 (156)
T PF02421_consen 146 GEGIDELKDAI 156 (156)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHhhC
Confidence 99999999875
No 12
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.92 E-value=2e-23 Score=203.42 Aligned_cols=166 Identities=27% Similarity=0.350 Sum_probs=135.2
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....+++++++|.||||||||+|+|++...++|++.+||||+.....+..+|.++.++||.|+.+... .-...+++
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d----~VE~iGIe 288 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD----VVERIGIE 288 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc----HHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999986532 22357899
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
+++..+..||++++|+|++.+++..+....+ . ...+.|+++|+||+|+..... ... + +...-..++.
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~----~~~~~~~i~v~NK~DL~~~~~-~~~----~-~~~~~~~~i~ 355 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE---L----LPKKKPIIVVLNKADLVSKIE-LES----E-KLANGDAIIS 355 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH---h----cccCCCEEEEEechhcccccc-cch----h-hccCCCceEE
Confidence 9999999999999999998766665555444 1 122478999999999987532 111 1 1112224899
Q ss_pred EecCCCcChHHHHHHHHHhccCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
+||++|+|++.|.++|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999999988655
No 13
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=2.1e-23 Score=202.71 Aligned_cols=172 Identities=26% Similarity=0.379 Sum_probs=141.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
...++|+++|.||+|||||+|+|+|.+...+++.+|||++.+...+..++..+.++||.|...... .........+.++
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~k-i~e~~E~~Sv~rt 254 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGK-ITESVEKYSVART 254 (444)
T ss_pred CCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccc-cccceEEEeehhh
Confidence 357999999999999999999999999999999999999999999999999999999999975432 2212223456778
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHH---HHHHhcCCCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKV---AEQFKHLPGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~---~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|++.++++++..+..++.+.+ .++++|+||.|+.+.. ....+. +.......++.++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g------~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG------RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC------CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeE
Confidence 88889999999999999999999998888888765 6799999999998752 222222 3333334566789
Q ss_pred EEEecCCCcChHHHHHHHHHhcc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++||++|.|++++++.+.+...
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHH
Confidence 99999999999999999987653
No 14
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.9e-22 Score=204.60 Aligned_cols=244 Identities=20% Similarity=0.208 Sum_probs=156.3
Q ss_pred CCcEEEEeCCCC------------------ccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHH
Q 014461 45 DCDSVFDSSYFR------------------IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEE 104 (424)
Q Consensus 45 ~~d~vie~~dar------------------~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~ 104 (424)
.+|+++-+-|++ .|++. -||+|+...+. .....+.......+++|+ ++.|..++...
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~- 193 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLDA- 193 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHHH-
Confidence 477777666665 45555 67889864322 122222222223467777 88888777211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec
Q 014461 105 EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK 184 (424)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~ 184 (424)
+.+...+... .........+|+++|.||||||||+|+|++.....++..+++|++.....+..
T Consensus 194 ------------i~~~l~~~~~-----~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~ 256 (472)
T PRK03003 194 ------------VLAALPEVPR-----VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL 256 (472)
T ss_pred ------------HHhhcccccc-----cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE
Confidence 1111111000 00112346899999999999999999999988777889999999887777777
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
++.++.+|||||+........... .....++...+..+|++++|+|++++.+..+..+...+.. .+.|+++|+
T Consensus 257 ~~~~~~l~DTaG~~~~~~~~~~~e-~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~------~~~piIiV~ 329 (472)
T PRK03003 257 GGKTWRFVDTAGLRRRVKQASGHE-YYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIE------AGRALVLAF 329 (472)
T ss_pred CCEEEEEEECCCccccccccchHH-HHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEE
Confidence 888899999999854321110011 1111223345678999999999988766555544444433 247899999
Q ss_pred ecCCCCCChh--hHHHHH-HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 265 NKVDLVTKKK--DLLKVA-EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 265 NK~Dl~~~~~--~~~~~~-~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
||+|+..... ...... +.+. ...+.+++++||++|.|++++++.+.+.+..
T Consensus 330 NK~Dl~~~~~~~~~~~~i~~~l~-~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 330 NKWDLVDEDRRYYLEREIDRELA-QVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ECcccCChhHHHHHHHHHHHhcc-cCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 9999975321 111112 2222 2234469999999999999999999987753
No 15
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=8.5e-22 Score=199.61 Aligned_cols=243 Identities=22% Similarity=0.279 Sum_probs=161.3
Q ss_pred CCcEEEEeCCCCc------------------cCCC-CCCCCCCCccChhhHHHHHHhcCC-eEEEeec-cccccchhhhH
Q 014461 45 DCDSVFDSSYFRI------------------PTID-DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE 103 (424)
Q Consensus 45 ~~d~vie~~dar~------------------p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~-~i~f~~~-~~~~~~~l~~~ 103 (424)
.+|+++-+-|++. |++. -||+|+...+... .. +...+. .++..++ ++.|...+...
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~~ 154 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPISAEHGRGIGDLLDA 154 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEEeCCcCCChHHHHHH
Confidence 4677777767653 4444 5688886544321 12 233443 5677777 77777655111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe
Q 014461 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (424)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~ 183 (424)
+...+..... .........+|+++|.+|+|||||+|+|++.....+++.++||++.....+.
T Consensus 155 --------------i~~~l~~~~~----~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~ 216 (429)
T TIGR03594 155 --------------ILELLPEEEE----EEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFE 216 (429)
T ss_pred --------------HHHhcCcccc----cccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEE
Confidence 1111111000 0112234689999999999999999999998877788999999988777777
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
.++..+.+|||||+........ ........++...+..+|++++|+|++++.+..+..+...+.+. +.|+++|
T Consensus 217 ~~~~~~~liDT~G~~~~~~~~~-~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~------~~~iiiv 289 (429)
T TIGR03594 217 RNGKKYLLIDTAGIRRKGKVTE-GVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA------GKALVIV 289 (429)
T ss_pred ECCcEEEEEECCCccccccchh-hHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCcEEEE
Confidence 7788999999999875432111 11122334555678889999999999987776665555544432 3789999
Q ss_pred EecCCCCCChhhHHHHHHHHhcC---CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 264 MNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||+|+...........+.+... .+..+++++||++|.|++++++++.+.+.
T Consensus 290 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 290 VNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999983323333333333322 23456999999999999999999988764
No 16
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.9e-21 Score=196.00 Aligned_cols=171 Identities=26% Similarity=0.374 Sum_probs=128.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
...++|+++|.+|+|||||+|+|++.....+++.+++|++.....+...+..+.+|||||+........ ........++
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~-~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTE-GVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhh-HHHHHHHHHH
Confidence 357999999999999999999999988878899999999988777777888899999999865432111 1111223455
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIF 293 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~ 293 (424)
+..+..+|++++|+|++.+.+..+..+...+.+. +.|+++|+||+|+... ....+..+.+.. ..+..+++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~------~~~~ivv~NK~Dl~~~-~~~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA------GRALVIVVNKWDLVDE-KTMEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCCCH-HHHHHHHHHHHHhcccccCCCEE
Confidence 6677889999999999988777666665555543 3789999999999853 222333333322 22345699
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|++++++.+.+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 17
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.88 E-value=4.9e-21 Score=167.14 Aligned_cols=167 Identities=35% Similarity=0.567 Sum_probs=126.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...+|+++|.+|+|||||+|++++...+.....+.+++..........+..+.+|||||+....... .........
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~----~~~~~~~~~ 77 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL----GERMVKAAW 77 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH----HHHHHHHHH
Confidence 3578999999999999999999999887777777888777666666677889999999987542211 011122334
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++........+...+... +.|+++|+||+|+......+.+....+....+..+++++|+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS------KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh------CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEe
Confidence 456788999999999876455555555555543 36899999999998544566666777777666667999999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
+++.|+++++++|.+.+
T Consensus 152 ~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 152 LKGENVDELLEEIVKYL 168 (168)
T ss_pred ccCCChHHHHHHHHhhC
Confidence 99999999999997753
No 18
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-21 Score=168.26 Aligned_cols=167 Identities=19% Similarity=0.212 Sum_probs=127.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+|++++|..|||||||+-++..+++... .+..+...-+....+......+.+|||.|+..+++..+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slap----------- 72 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAP----------- 72 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccc-----------
Confidence 468999999999999999999998887532 11112111111111223345678999999987643221
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
.++++|+++|+|+|+++ .++......|++++.....++.-+.+|+||+|+...++...+..+.+.+..++. +|++|
T Consensus 73 -MYyRgA~AAivvYDit~--~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll-~~ETS 148 (200)
T KOG0092|consen 73 -MYYRGANAAIVVYDITD--EESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLL-FFETS 148 (200)
T ss_pred -ceecCCcEEEEEEeccc--HHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCE-EEEEe
Confidence 35788999999999976 445567788999988777777777889999999986666667778888887876 99999
Q ss_pred cCCCcChHHHHHHHHHhccCCCC
Q 014461 297 GLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
||+|.|++++|..|.+.++....
T Consensus 149 AKTg~Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 149 AKTGENVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred cccccCHHHHHHHHHHhccCccc
Confidence 99999999999999999987653
No 19
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.2e-21 Score=188.39 Aligned_cols=169 Identities=26% Similarity=0.334 Sum_probs=120.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...|+++|.||||||||+|+|.+.+. .++++++||..+..+.+.. ++.++.+|||||+.+.... ....-...+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~-----~~gLg~~fl 231 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE-----GAGLGHRFL 231 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc-----cccHHHHHH
Confidence 45799999999999999999998764 4789999999999988876 5567999999999754221 011233445
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+..+|++++|+|+++.. ....+..|..++.... ..+.|+++|+||+|+...........+.+....+. .++++
T Consensus 232 rhie~a~vlI~ViD~s~~~--s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~-~i~~i 308 (335)
T PRK12299 232 KHIERTRLLLHLVDIEAVD--PVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGG-PVFLI 308 (335)
T ss_pred HHhhhcCEEEEEEcCCCCC--CHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCC-CEEEE
Confidence 6677899999999997532 2333334444443221 12479999999999976433222233333333333 49999
Q ss_pred ecCCCcChHHHHHHHHHhccC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~ 316 (424)
||++|.|+++++++|.+.+..
T Consensus 309 SAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 309 SAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 20
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.87 E-value=2.4e-21 Score=170.70 Aligned_cols=165 Identities=25% Similarity=0.342 Sum_probs=111.2
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
+|+++|.+|||||||+|+|.+... .++..+++|.....+.+...+. .+.+|||||+....... . .+....+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~---~~~~~~~~~ 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG--K---GLGHRFLRH 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc--C---CchHHHHHH
Confidence 589999999999999999998665 4667777777776666666665 89999999985322110 1 122334445
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
+..+|++++|+|+++.. .....+..+++.+.... ..+.|+++|+||+|+.+... .......+.......+++++||
T Consensus 76 ~~~~d~vi~v~D~~~~~-~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 76 IERTRLLLHVIDLSGDD-DPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-LFELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHhCCEEEEEEecCCCC-CHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-hHHHHHHHHhhCCCCCEEEEec
Confidence 56789999999997531 12222333333332111 12478999999999976533 3333333333322235899999
Q ss_pred CCCcChHHHHHHHHHh
Q 014461 298 LKGAGLKALTQYLMEQ 313 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~ 313 (424)
++|.|+++++++|.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999865
No 21
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=3.9e-21 Score=166.66 Aligned_cols=157 Identities=25% Similarity=0.389 Sum_probs=116.1
Q ss_pred EEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (424)
Q Consensus 143 ~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (424)
+++|.+|||||||+|+|++......+..+++|+..........+..+.+|||||+..... .............+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~----~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE----GISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh----HHHHHHHHHHHHHHHh
Confidence 479999999999999999987666778888888777666777788899999999875421 0111223333445678
Q ss_pred ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC
Q 014461 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG 302 (424)
Q Consensus 223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 302 (424)
+|++++|+|+.+..+.....+..++... +.|+++|+||+|+...... ...+.. .+..+++++||++|.|
T Consensus 77 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~nK~D~~~~~~~----~~~~~~-~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 77 ADVILFVVDGREGLTPADEEIAKYLRKS------KKPVILVVNKVDNIKEEDE----AAEFYS-LGFGEPIPISAEHGRG 145 (157)
T ss_pred CCEEEEEEeccccCCccHHHHHHHHHhc------CCCEEEEEECcccCChHHH----HHHHHh-cCCCCeEEEecccCCC
Confidence 9999999999776655555555666543 3789999999999875322 222222 3444689999999999
Q ss_pred hHHHHHHHHHhc
Q 014461 303 LKALTQYLMEQA 314 (424)
Q Consensus 303 i~~L~~~i~~~l 314 (424)
+++++++|.+.+
T Consensus 146 v~~l~~~l~~~~ 157 (157)
T cd01894 146 IGDLLDAILELL 157 (157)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 22
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=3.2e-20 Score=169.02 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=111.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....++|+++|++|||||||+|++++.... +.+.+.+|.......+...+ ..+.+|||||+.... . ......+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~-~~~~~~~~ 112 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL---P-HQLVEAFR 112 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCC---C-HHHHHHHH
Confidence 345689999999999999999999997643 34445555555444444444 389999999986431 1 12223344
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..+..+..+|++++|+|++++..... ..+.+++..... .+.|+++|+||+|+..... .. ..... ...+++
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~---~~~~viiV~NK~Dl~~~~~-~~----~~~~~-~~~~~~ 183 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGA---EDIPMILVLNKIDLLDDEE-LE----ERLEA-GRPDAV 183 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCc---CCCCEEEEEEccccCChHH-HH----HHhhc-CCCceE
Confidence 44555678999999999976543322 233455554432 2478999999999976422 11 11222 233599
Q ss_pred EEecCCCcChHHHHHHHHHhc
Q 014461 294 MTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l 314 (424)
++||++|.|+++++++|.+.+
T Consensus 184 ~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 184 FISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred EEEcCCCCCHHHHHHHHHhhC
Confidence 999999999999999998753
No 23
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=7.5e-21 Score=202.94 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=124.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...+|+++|.+|||||||+|+|++.+...+++.++||++.....+..++.++.+|||||+........... .....++.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e-~~~~~r~~ 527 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAE-YYSSLRTQ 527 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHH-HHHHHHHH
Confidence 35799999999999999999999998777889999999988777778888999999999864322111001 11122344
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~ 294 (424)
..+..+|++++|+|++++.+..+..+...+... +.|+++|+||+|+.+.. ........+.. ...+.++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~i~~~~~~~------~~piIiV~NK~DL~~~~-~~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLKVMSMAVDA------GRALVLVFNKWDLMDEF-RRQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEEchhcCChh-HHHHHHHHHHHhccCCCCCCEEE
Confidence 567889999999999887666555544444332 47899999999997632 21222222221 223456899
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|+++|++.+.+.+..
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998753
No 24
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=2.1e-20 Score=189.03 Aligned_cols=159 Identities=23% Similarity=0.348 Sum_probs=121.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+++|+++|.+|||||||+|+|++...+.+++.+++|++.....+..++..+.+|||||+..+.. ......+..+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~gi~~~ 288 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKIGIERS 288 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHHHHHHH
Confidence 456899999999999999999999988777899999999888777778888999999999864321 1112235667
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+..+..+|++++|+|++++.+..+. ..+.. ..+.|+++|+||+|+...... . .. ...+++++|
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-----~~~~piiiV~NK~DL~~~~~~-~-------~~-~~~~~i~iS 351 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDD---EILEE-----LKDKPVIVVLNKADLTGEIDL-E-------EE-NGKPVIRIS 351 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHH---HHHHh-----cCCCCcEEEEEhhhccccchh-h-------hc-cCCceEEEE
Confidence 7788999999999999865543322 22222 124789999999999764221 1 11 223589999
Q ss_pred cCCCcChHHHHHHHHHhccC
Q 014461 297 GLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~ 316 (424)
|++|.|+++|+++|.+.+..
T Consensus 352 Aktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 352 AKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 99999999999999998754
No 25
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.87 E-value=9e-21 Score=166.78 Aligned_cols=167 Identities=24% Similarity=0.320 Sum_probs=108.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
++|+++|.+|||||||+|+|.+.... ++..+++|.....+.....+.++.+|||||+..... ............+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~~~-- 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPL-EERNTIEMQAITAL-- 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cCCCCCcccceeEEEEccCceEEEEEECCCcCCccc-cCCchHHHHHHHHH--
Confidence 36899999999999999999987764 455666676666555556678999999999853211 00000100011111
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
...+|++++|+|+++..+........++..+.... .+.|+++|+||+|+.... .... .+.+..... .+++++||++
T Consensus 77 ~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~-~~~~-~~~~~~~~~-~~~~~~Sa~~ 152 (168)
T cd01897 77 AHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFE-DLSE-IEEEEELEG-EEVLKISTLT 152 (168)
T ss_pred HhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchh-hHHH-HHHhhhhcc-CceEEEEecc
Confidence 12358999999997643322222334444433221 257999999999997642 2222 334443333 3599999999
Q ss_pred CcChHHHHHHHHHhc
Q 014461 300 GAGLKALTQYLMEQA 314 (424)
Q Consensus 300 g~gi~~L~~~i~~~l 314 (424)
|.|+++++++|.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998765
No 26
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=6.4e-21 Score=167.45 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=107.8
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|+|||||++++.+..+........ +.+.....+..++ ..+.+|||||...+ ....
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~------------~~~~ 69 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTI-GVDFTMKTLEIEGKRVKLQIWDTAGQERF------------RTIT 69 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCcc-ceEEEEEEEEECCEEEEEEEEECCChHHH------------HHHH
Confidence 4789999999999999999998876543222111 1112222233344 47899999996432 1112
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+...+....+....+.+..+...++++|
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 147 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSS--FESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS 147 (165)
T ss_pred HHHhccCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE
Confidence 234677899999999975322 233445555544333346899999999999765433334445555555666689999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|++++++.+.+.+
T Consensus 148 a~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 148 AKESQNVEEAFLLMATEL 165 (165)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 27
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=5.3e-21 Score=172.40 Aligned_cols=167 Identities=14% Similarity=0.157 Sum_probs=110.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++|+++|.+|||||||++++.+..+.. .....++. ......+..+ ..++.+|||||..... ...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR------------SVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH------------Hhh
Confidence 479999999999999999999877642 22222222 2212123333 3568899999964321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++. .....+..|+..+......+.|+++|+||+|+...+.........+....+. +++++|
T Consensus 68 ~~~~~~ad~~i~v~D~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~S 144 (191)
T cd04112 68 HAYYRDAHALLLLYDITNK--ASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV-PFMETS 144 (191)
T ss_pred HHHccCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC-eEEEEe
Confidence 2346778999999999753 2223344455444333333589999999999965333223334445444454 599999
Q ss_pred cCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 297 GLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
|++|.|+++++++|.+.+....+.++
T Consensus 145 a~~~~~v~~l~~~l~~~~~~~~~~~~ 170 (191)
T cd04112 145 AKTGLNVELAFTAVAKELKHRKYEQP 170 (191)
T ss_pred CCCCCCHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999877665543
No 28
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.86 E-value=7.1e-21 Score=167.28 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=107.7
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++.+.++..... +..+... .... .......+.+|||||...+. . ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~---------~---~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV-STVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR---------T---ITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCEEEEEEEEECCChHHHH---------H---HHH
Confidence 689999999999999999999887642211 1111111 1111 11223568999999975321 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..++.+|++++|+|+++. .....+.+|+..+......+.|+++|+||+|+...+....+....+....+. +++++||
T Consensus 69 ~~~~~~~~~l~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (165)
T cd01865 69 AYYRGAMGFILMYDITNE--ESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF-EFFEASA 145 (165)
T ss_pred HHccCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-EEEEEEC
Confidence 346789999999999753 2334556677666544444688999999999976533323334445444555 4999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|+++++++|.+.+.
T Consensus 146 ~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 146 KENINVKQVFERLVDIIC 163 (165)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 29
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.86 E-value=1.1e-20 Score=171.03 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=107.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++++..+... ..|.++..........++ ..+.+|||||...+.... . ........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~-~---~e~~~~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTA-G---QEWMDPRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCcccCCccc-h---hHHHHHHH
Confidence 4799999999999999999998876532 222222222222233344 467899999986432111 1 11122233
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCCCeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGYERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~ 293 (424)
..+..+|++++|+|++++. ....+..|++.+... ...+.|+++|+||+|+...+....+..+.+.. ..+. +++
T Consensus 76 ~~~~~ad~iilv~D~~~~~--S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~ 152 (198)
T cd04142 76 RGLRNSRAFILVYDICSPD--SFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKC-GYL 152 (198)
T ss_pred hhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCC-cEE
Confidence 4568899999999997532 222333343333221 13458999999999996543222233344432 3344 499
Q ss_pred EEecCCCcChHHHHHHHHHhccCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
++||++|.|++++|+.+.+.+...
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISATTR 176 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHhhcc
Confidence 999999999999999999877543
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=9.3e-21 Score=166.66 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=108.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++|+++|.+|||||||++++.+..+. ...+.+..... ...+..+ ...+.+|||||...+. . ..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~~ 68 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR---------A---VT 68 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------H---HH
Confidence 68999999999999999999987664 23333322221 1112233 3468999999975321 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...++.+|++++|+|+++. .....+..|+........++.|+++|+||+|+........+....+....+. .++++|
T Consensus 69 ~~~~~~~~~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 145 (166)
T cd04122 69 RSYYRGAAGALMVYDITRR--STYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL-LFLECS 145 (166)
T ss_pred HHHhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-EEEEEE
Confidence 2346789999999999763 2334455666655443345689999999999976543333444555554454 599999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|++++++.+...+
T Consensus 146 a~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 146 AKTGENVEDAFLETAKKI 163 (166)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 31
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=9.8e-21 Score=166.39 Aligned_cols=159 Identities=19% Similarity=0.125 Sum_probs=101.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++++..+... ...+........ .......+.+|||||...+. ... .
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~---~ 67 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRES--YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP---------AMQ---R 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCC--cCCcchheEEEEEEECCEEEEEEEEECCCCCcch---------HHH---H
Confidence 6899999999999999999998775321 111111111111 22334568899999986431 111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++..+... ..+.+.+.+......++.|+++|+||+|+...+.........+....+. .+++||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S 146 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNC-AFMETS 146 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCC-cEEEee
Confidence 23567899999999976432211 2333445444333334689999999999976333222233334443444 489999
Q ss_pred cCCCcChHHHHHHHHHh
Q 014461 297 GLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~ 313 (424)
|++|.|+++++++|.+.
T Consensus 147 A~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 147 AKTNHNVQELFQELLNL 163 (165)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 99999999999999864
No 32
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.4e-20 Score=192.27 Aligned_cols=164 Identities=24% Similarity=0.300 Sum_probs=124.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...+|+++|.+|||||||+|+|++...+.+.+.+++|++.........+..+.+|||||+...... ........+.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~ 112 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKG----LQASVAEQAE 112 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchh----HHHHHHHHHH
Confidence 457899999999999999999999888778899999998888777788889999999998632211 1112223344
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++|+|+|++++.+..+..+..++... +.|+++|+||+|+....... .+.+. .++...++|||
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~------~~piilV~NK~Dl~~~~~~~---~~~~~--~g~~~~~~iSA 181 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS------GKPVILAANKVDDERGEADA---AALWS--LGLGEPHPVSA 181 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECccCCccchhh---HHHHh--cCCCCeEEEEc
Confidence 567889999999999887766666666666642 47999999999986532211 12222 24445689999
Q ss_pred CCCcChHHHHHHHHHhccC
Q 014461 298 LKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~ 316 (424)
++|.|+++|+++|.+.++.
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999998865
No 33
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.86 E-value=1.2e-20 Score=183.14 Aligned_cols=169 Identities=27% Similarity=0.352 Sum_probs=120.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
-...|+++|.||||||||+|+|.+.+. .+++++.||..+..+.+...+ .++.+|||||+.+..... ...-...
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~-----~gLg~~f 229 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG-----AGLGHRF 229 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc-----ccHHHHH
Confidence 346799999999999999999998764 478889999998888877766 789999999997542210 1122334
Q ss_pred HhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccC--CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 217 WSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQ--APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~--~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
+..+..+|++++|+|+++. .......+..+.+++... ...+.|+++|+||+|+... ....+..+.+.+..+. +++
T Consensus 230 lrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~~~~~~~~l~~~~~~-~vi 307 (329)
T TIGR02729 230 LKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EELAELLKELKKALGK-PVF 307 (329)
T ss_pred HHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HHHHHHHHHHHHHcCC-cEE
Confidence 5556788999999999753 112223333333333221 1124799999999999765 3344555566554444 499
Q ss_pred EEecCCCcChHHHHHHHHHhc
Q 014461 294 MTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l 314 (424)
++||+++.|+++++++|.+.+
T Consensus 308 ~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 308 PISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEEccCCcCHHHHHHHHHHHh
Confidence 999999999999999998765
No 34
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=4.1e-20 Score=162.67 Aligned_cols=168 Identities=27% Similarity=0.359 Sum_probs=117.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.++|+++|.+|+|||||+|+|++......++.+++++......+..++..+.+|||||+......... .........+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~-~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG-IEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc-HHHHHHHHHHH
Confidence 47899999999999999999999876667777888877766666677778999999998754211100 00111233445
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhcCCC---CCeEEE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG---YERIFM 294 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~---~~~~~~ 294 (424)
.+..+|++++|+|++++.+.....+...+... +.|+++|+||+|+.... .......+.+....+ ..++++
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEE------GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc------CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 56788999999999876554443333333221 37899999999997652 223333333433322 346999
Q ss_pred EecCCCcChHHHHHHHHHh
Q 014461 295 TSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~ 313 (424)
+||++|.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998753
No 35
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=3.2e-20 Score=162.20 Aligned_cols=155 Identities=18% Similarity=0.336 Sum_probs=101.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeec--CCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS--RKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~--~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.|+++|.+|||||||+|+|.+....... ..+++|.......+... +..+.+|||||+..+ .....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~------------~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF------------IKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH------------HHHHH
Confidence 5899999999999999999975432222 23455555544444444 678999999997432 22333
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCC-CCCeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLP-GYERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~~ 293 (424)
..+..+|++++|+|+++++..........+...+ ..|+++|+||+|+..... ...+..+.+.... ...+++
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEE
Confidence 4567899999999997644333333333333322 248999999999976421 1122233333320 123599
Q ss_pred EEecCCCcChHHHHHHHHH
Q 014461 294 MTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~ 312 (424)
++||++|.|++++++.|.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998864
No 36
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.85 E-value=2.1e-20 Score=164.30 Aligned_cols=161 Identities=17% Similarity=0.188 Sum_probs=108.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|||||||++++.+..+.. ...+..+.......+... ..++.+|||||...+. . ..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~---~~ 68 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---------T---IT 68 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH---------H---HH
Confidence 3689999999999999999999877643 222222222222223333 3468999999965321 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...++.+|++++|+|+++. .....+..|+..+.....++.|+++|+||+|+........+....+....+. +++++|
T Consensus 69 ~~~~~~~~~ii~v~d~~~~--~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 145 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI-PFLETS 145 (166)
T ss_pred HHHhCcCCEEEEEEECcCH--HHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEEE
Confidence 2345788999999999753 2334455666655443334589999999999876433323334455555555 499999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++++++|.+.+.
T Consensus 146 a~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 146 AKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999988763
No 37
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.85 E-value=2.3e-20 Score=169.24 Aligned_cols=159 Identities=16% Similarity=0.213 Sum_probs=107.7
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.|+++|.+|||||||++++....+.. ....|. .......+..++ ..+.+|||+|...+. . + ..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~--~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~---------~-l--~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCE--ACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---------S-I--TS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH---------H-H--HH
Confidence 58999999999999999999877642 222222 222222233444 567899999986431 1 1 12
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC-CCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~iS 296 (424)
..++.+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...++......+.+.+.. +. .++++|
T Consensus 68 ~y~~~ad~iIlVfDvtd~~--Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~-~~~etS 144 (202)
T cd04120 68 AYYRSAKGIILVYDITKKE--TFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGM-RFCEAS 144 (202)
T ss_pred HHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCC-EEEEec
Confidence 3467899999999998643 2334445555444333346899999999999764444444455555443 33 599999
Q ss_pred cCCCcChHHHHHHHHHhccC
Q 014461 297 GLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~ 316 (424)
|++|.||+++|++|.+.+..
T Consensus 145 Aktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 145 AKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987643
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.85 E-value=4.1e-20 Score=170.12 Aligned_cols=195 Identities=14% Similarity=0.134 Sum_probs=123.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|||||||+++++.+.+.. .....+.+..............+.+|||||...+.. +.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~- 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LR- 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence 567899999999999999999988766532 122222222222211222345789999999865421 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++|+|+|.++.. ....+..|+..+.... ++.|+++|+||+|+.... ...+.. .+....++ .++++
T Consensus 80 -~~~~~~~~~~ilvfD~~~~~--s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~~-v~~~~~-~~~~~~~~-~~~e~ 152 (219)
T PLN03071 80 -DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNL-QYYEI 152 (219)
T ss_pred -HHHcccccEEEEEEeCCCHH--HHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhcc-CCHHHH-HHHHhcCC-EEEEc
Confidence 12357789999999997642 2334456666554332 358999999999986432 112222 34333444 49999
Q ss_pred ecCCCcChHHHHHHHHHhccCC--------CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461 296 SGLKGAGLKALTQYLMEQAVQR--------PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ 349 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~--------~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~ 349 (424)
||++|.|++++|++|.+.+... +..+++....++.......+.+++.....+.+
T Consensus 153 SAk~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (219)
T PLN03071 153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPD 214 (219)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999887543 23334444455555555556666666555543
No 39
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=1.6e-20 Score=165.60 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=108.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.++|+++|.+|||||||++++.+..+....... +.+..............+.+|||||...+ .....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~~~~ 71 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF------------RSITR 71 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH------------HHHHH
Confidence 478999999999999999999987764332222 22222222112222346899999996432 11122
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..++.+|++++|+|+++. .....+..|+.++.....++.|+++|+||+|+.............+....+. .++++||
T Consensus 72 ~~~~~~d~il~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 148 (168)
T cd01866 72 SYYRGAAGALLVYDITRR--ETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL-IFMETSA 148 (168)
T ss_pred HHhccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 345788999999999752 2334556677665444345689999999999975433223334444444444 4999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|++++++++.+.+.
T Consensus 149 ~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 149 KTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 40
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.85 E-value=1.6e-20 Score=165.45 Aligned_cols=160 Identities=14% Similarity=0.139 Sum_probs=106.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|++|||||||++++.+..+... ..+..+.+.....+...+ ..+.+|||||...+. . ..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~---------~---~~ 69 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPS-FISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR---------T---IT 69 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcc-cccCccceEEEEEEEECCEEEEEEEEeCCchHHHH---------H---HH
Confidence 47899999999999999999998776421 111111111111222233 468899999965321 1 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...++.+|++++|+|+++.. ....+.+|+..+......+.|+++|+||+|+.+......+....+....+. +++++|
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEK--SFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI-KFLETS 146 (167)
T ss_pred HHHhCCCCEEEEEEECcCHH--HHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 23467899999999997532 233455666655443334689999999999986433233334444444455 499999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 147 a~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 147 AKANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998876
No 41
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.85 E-value=2.2e-20 Score=163.02 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=107.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|++|||||||+|++++.++.. ...+.++.+.....+..++ .++.+|||||...+. .+. .
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------~~~---~ 67 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR---------SLI---P 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH---------HHH---H
Confidence 379999999999999999999887753 4445555544444444444 468999999964321 111 2
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|++++.+ ...+..++..+......+.|+++|+||+|+........+....+....+. .++++||
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQS--FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNA-MFIETSA 144 (161)
T ss_pred HHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEEeC
Confidence 34577899999999975322 23344555544333333589999999999954433333334444444444 4999999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
++|.|+++++++|.+.+
T Consensus 145 ~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 145 KAGHNVKELFRKIASAL 161 (161)
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 99999999999998753
No 42
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.85 E-value=4.2e-20 Score=160.02 Aligned_cols=156 Identities=28% Similarity=0.416 Sum_probs=115.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+.+|+++|++|+|||||+|++.+.....+++.+++|.......+...+.++.+|||||+...... .........+.
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~----~~~~~~~~~~~ 76 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE----IEKIGIERARE 76 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch----HHHHHHHHHHH
Confidence 35899999999999999999999887777888888887766666677788999999998754321 11123445556
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|++...+....... .. ....|+++|+||+|+...... .... ...+++++||+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~---~~-----~~~~~vi~v~nK~D~~~~~~~-------~~~~-~~~~~~~~Sa~ 140 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEIL---EL-----PADKPIIVVLNKSDLLPDSEL-------LSLL-AGKPIIAISAK 140 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHH---Hh-----hcCCCEEEEEEchhcCCcccc-------cccc-CCCceEEEECC
Confidence 67789999999999864444333222 22 124789999999999864322 1112 23359999999
Q ss_pred CCcChHHHHHHHHHhc
Q 014461 299 KGAGLKALTQYLMEQA 314 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l 314 (424)
+|.|+++++++|.+.+
T Consensus 141 ~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 141 TGEGLDELKEALLELA 156 (157)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 9999999999998754
No 43
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=3.2e-20 Score=184.64 Aligned_cols=168 Identities=24% Similarity=0.348 Sum_probs=118.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..|+++|.||||||||+|+|++.+. .++++++||..+..+.+... +.++.++||||+...... ........+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~-----~~gLg~~fLr 232 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE-----GVGLGHQFLR 232 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc-----cchHHHHHHH
Confidence 4799999999999999999998775 46889999999988877766 678999999999753211 1122334455
Q ss_pred hcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
.+..+|++++|+|+++.. ..+...+..+..++.... ....|+++|+||+|+......+ +.+.+..+ .+++++
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l----~~l~~~l~-~~i~~i 307 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENL----EEFKEKLG-PKVFPI 307 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHH----HHHHHHhC-CcEEEE
Confidence 677899999999997431 122222333333332211 1257999999999985432222 23333333 359999
Q ss_pred ecCCCcChHHHHHHHHHhccCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
||++|.|+++|+++|.+.+...+
T Consensus 308 SA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 308 SALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999886544
No 44
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.85 E-value=2.6e-20 Score=163.05 Aligned_cols=159 Identities=15% Similarity=0.102 Sum_probs=105.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|+|||||++++++..+. .....++..........++ ..+.+|||||..... ....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~~-- 68 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFV--TDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS---------AMRE-- 68 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceEEEEEEECCEEEEEEEEECCCCcchh---------HHHH--
Confidence 478999999999999999999987653 3444444433332233333 467899999976431 1111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+..+|++++|+|+++..+ ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++++
T Consensus 69 -~~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (164)
T cd04145 69 -QYMRTGEGFLLVFSVTDRGS--FEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI-PYIET 144 (164)
T ss_pred -HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC-cEEEe
Confidence 23567899999999975322 22333444333221 123579999999999976433223334445444455 49999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|.|+++++++|.+.+
T Consensus 145 Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 145 SAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eCCCCCCHHHHHHHHHHhh
Confidence 9999999999999998764
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.85 E-value=2.1e-20 Score=163.41 Aligned_cols=158 Identities=16% Similarity=0.127 Sum_probs=103.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++.+..+. .....|+.......+..++ ..+.+|||||...+.. +. .
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTA----------MR--D 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccch----------HH--H
Confidence 68999999999999999999987654 2333333332223333344 4567899999865421 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|+++..+ ...+..|+..+... ...+.|+++|+||+|+...+.........+....+ .+++++|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~S 144 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSS--FNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETS 144 (163)
T ss_pred HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEec
Confidence 23567899999999975322 23333444333221 12358999999999997543333333444544445 4599999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998754
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=2.3e-20 Score=189.14 Aligned_cols=161 Identities=24% Similarity=0.319 Sum_probs=127.7
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|||||||+|+|++...+.+++.+++|++.........+..+.+|||||+..... .........+...+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~----~~~~~~~~~~~~~~ 76 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD----GLDKQIREQAEIAI 76 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch----hHHHHHHHHHHHHH
Confidence 48999999999999999999988888899999999988887888888999999999854321 11123344555667
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g 300 (424)
..+|++++|+|+..+.+..+..+.+++++. +.|+++|+||+|+....... .++. ..++.+++++||++|
T Consensus 77 ~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVvNK~D~~~~~~~~----~~~~-~lg~~~~~~vSa~~g 145 (429)
T TIGR03594 77 EEADVILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVANKIDGKKEDAVA----AEFY-SLGFGEPIPISAEHG 145 (429)
T ss_pred hhCCEEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEEECccCCcccccH----HHHH-hcCCCCeEEEeCCcC
Confidence 889999999999887777676777888764 37899999999987643222 2222 346667999999999
Q ss_pred cChHHHHHHHHHhccC
Q 014461 301 AGLKALTQYLMEQAVQ 316 (424)
Q Consensus 301 ~gi~~L~~~i~~~l~~ 316 (424)
.|++++++++.+.++.
T Consensus 146 ~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 146 RGIGDLLDAILELLPE 161 (429)
T ss_pred CChHHHHHHHHHhcCc
Confidence 9999999999998865
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.85 E-value=3.1e-20 Score=162.98 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=106.9
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+|+++|.+|||||||++++.+..+.... .+..+.+.....+..++ ..+.+|||||..... ...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~--- 69 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDS-KSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR---------AIT--- 69 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH---------HHH---
Confidence 368999999999999999999988765322 22222222222233333 468899999975321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..++++++|+|+++.. ....+.+|+..+......+.|+++|+||+|+...+....+....+....+. .++++|
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 146 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQ--TFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGL-SFIETS 146 (165)
T ss_pred HHHHCCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCC-EEEEEE
Confidence 12356789999999997532 233455566655443333589999999999976433333334444444444 499999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 147 a~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 147 ALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998764
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.85 E-value=2.6e-20 Score=163.13 Aligned_cols=159 Identities=14% Similarity=0.122 Sum_probs=102.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+|++.+..+.. ....++.+........+ ...+.+|||||...+. ....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~--- 66 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS---------AMRD--- 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch---------HHHH---
Confidence 379999999999999999999877642 22233332222222333 3467899999976532 1111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|+++..+ ...+..|...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 143 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQS--FEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGC-PFLETS 143 (164)
T ss_pred HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCC-EEEEee
Confidence 23567899999999975322 2223333322211 1122579999999999976433223334444444443 599999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++++++|.+.+.
T Consensus 144 a~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 144 AKERVNVDEAFYDLVREIR 162 (164)
T ss_pred cCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998763
No 49
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=3.8e-20 Score=186.22 Aligned_cols=171 Identities=25% Similarity=0.319 Sum_probs=119.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
....|+++|.||||||||+|+|++.+.. ++++++||+....+.+...+.++.++||||+..... .....-...+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas-----~g~gLg~~fL 231 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS-----EGKGLGLDFL 231 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccc-----hhhHHHHHHH
Confidence 4567999999999999999999987654 689999999999998888888999999999875321 1112223445
Q ss_pred hhcccccEEEEEEeCCCCC--CCch---HHHHHHHHHhccC--------CCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHL--TSPD---SRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~--~~~~---~~~~~~l~~~~~~--------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 284 (424)
..+..+|++++|+|++... ..+. ..+...|..+... .....|+++|+||+|+.............+.
T Consensus 232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~ 311 (500)
T PRK12296 232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELE 311 (500)
T ss_pred HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHH
Confidence 5678899999999997421 1111 1222233322210 1124799999999999754322222222333
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
. .+. ++|+|||+++.|+++|+++|.+.+..
T Consensus 312 ~-~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 312 A-RGW-PVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred H-cCC-eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 244 49999999999999999999888754
No 50
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=3.7e-20 Score=161.94 Aligned_cols=160 Identities=18% Similarity=0.218 Sum_probs=104.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++|+++|++|+|||||+|++++..+.. .....+.+.......+...+..+.+|||||..... .....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~------------~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR------------SLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHH------------HHHHH
Confidence 689999999999999999999987653 22222222222222233334568899999964321 11112
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|+++.. .......|+..+.....+..|+++|+||+|+.............+....+. .++++||+
T Consensus 70 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 146 (163)
T cd01860 70 YYRGAAAAIVVYDITSEE--SFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGL-LFFETSAK 146 (163)
T ss_pred HhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCC-EEEEEECC
Confidence 456789999999997532 223334455544333334689999999999874322222233344444444 49999999
Q ss_pred CCcChHHHHHHHHHhc
Q 014461 299 KGAGLKALTQYLMEQA 314 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l 314 (424)
+|.|+++++++|.+.+
T Consensus 147 ~~~~v~~l~~~l~~~l 162 (163)
T cd01860 147 TGENVNELFTEIAKKL 162 (163)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999876
No 51
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.84 E-value=3.9e-20 Score=162.23 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=103.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+++++.+.+. ....+|+.......+...+ ..+.+|||||...+.. +. .
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTA----------MR--D 67 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEECCCcccchh----------HH--H
Confidence 58999999999999999999876553 3344444433333333443 3567999999864321 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++..+ ...+.+|+..+.. ....+.|+++|+||+|+.............+.+..+. +++++|
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (164)
T cd04175 68 LYMKNGQGFVLVYSITAQST--FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC-AFLETS 144 (164)
T ss_pred HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC-EEEEee
Confidence 23567899999999865322 2223334443322 1234589999999999976432222233445444444 599999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 145 a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 145 AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.84 E-value=4.9e-20 Score=161.15 Aligned_cols=160 Identities=19% Similarity=0.209 Sum_probs=106.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+||+++|.+|+|||||++++.+..+.. ...+..+.......+..++ ..+.+|||||...+. ....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------------~~~~ 67 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR------------SITS 67 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH------------HHHH
Confidence 479999999999999999999877632 2222222222222233333 468899999964321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++..+ ...+..|+..+.....++.|+++|+||+|+....+...+....+....++. ++++||
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s--~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa 144 (164)
T smart00175 68 SYYRGAVGALLVYDITNRES--FENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FFETSA 144 (164)
T ss_pred HHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EEEEeC
Confidence 33577899999999975322 233445666554433346899999999998764332233344455555654 999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|+++++++|.+.+.
T Consensus 145 ~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 145 KTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999998764
No 53
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.84 E-value=3.4e-20 Score=164.30 Aligned_cols=161 Identities=16% Similarity=0.155 Sum_probs=106.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|||||||++++.+..+.. ....|........+..++ ..+.+|||||...+. .+..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~l~~-- 68 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT---------AMRD-- 68 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH---------HHhH--
Confidence 4689999999999999999999877642 222222222222233333 468899999976431 1111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+..+|++++|+|+++..+.... .+...+.+.. ..++.|+++|+||+|+...+....+....+.+..+. ++++|
T Consensus 69 -~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~ 144 (172)
T cd04141 69 -QYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR--LTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNC-PFFET 144 (172)
T ss_pred -HHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc--CCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCC-EEEEE
Confidence 235678999999999764433221 2223344332 123589999999999865433333344555554555 49999
Q ss_pred ecCCCcChHHHHHHHHHhccC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~ 316 (424)
||++|.||+++|++|...+..
T Consensus 145 Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 145 SAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred ecCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987653
No 54
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.84 E-value=2.1e-20 Score=168.37 Aligned_cols=158 Identities=13% Similarity=0.122 Sum_probs=103.1
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|.+|||||||+++|.+..+.. ....++..........++ ..+.+|||||...+. . +. ..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~~--~~ 66 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT---------A-LR--DQ 66 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH---------H-HH--HH
Confidence 48999999999999999999876642 233333222222222333 357899999975431 1 11 12
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHh---ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM---GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~---~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
.+..+|++++|+|.++..+ ...+..|+..+ ......+.|+++|+||+|+...+.........+....+. .++++
T Consensus 67 ~~~~ad~~ilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~ 143 (190)
T cd04144 67 WIREGEGFILVYSITSRST--FERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC-EFIEA 143 (190)
T ss_pred HHHhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC-EEEEe
Confidence 4667899999999975322 22333444333 221124589999999999975433333334445544454 49999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|++++++++.+.+.
T Consensus 144 SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 55
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.84 E-value=7.6e-20 Score=164.25 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=111.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...||+++|..|||||||+.++.+..+. .... ..+.......+..++ ..+.+|||||...+. .+.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~---------~l~- 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE--SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC---------TIF- 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHH---------HHH-
Confidence 4589999999999999999999986653 2221 112222222233334 568899999986431 111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...++.+|++++|+|+++.. ....+..|+.++.... ++.|+++|+||+|+...+....+..+.+.+..+. .+++
T Consensus 73 --~~~~~~ad~illVfD~t~~~--Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~-~~~e 146 (189)
T cd04121 73 --RSYSRGAQGIILVYDITNRW--SFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM-TFFE 146 (189)
T ss_pred --HHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCC-EEEE
Confidence 13357899999999997643 3334556666664332 4689999999999976444444556667666665 4999
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
|||++|.||+++|++|.+.+..
T Consensus 147 ~SAk~g~~V~~~F~~l~~~i~~ 168 (189)
T cd04121 147 VSPLCNFNITESFTELARIVLM 168 (189)
T ss_pred ecCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987653
No 56
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.84 E-value=3.8e-20 Score=161.74 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=104.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+||+++|++|||||||+++|.+..+..... +..+.......+..+ ...+.+|||||..... ....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------------~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ-HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR------------SVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CceeeeEEEEEEEECCEEEEEEEEECcchHHHH------------HhHH
Confidence 479999999999999999999877642221 111111111122222 3468899999975321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++.. ....+..|+........++.|+++|+||+|+........+....+....+. .++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd04113 68 SYYRGAAGALLVYDITNRT--SFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGL-LFLETSA 144 (161)
T ss_pred HHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCC-EEEEEEC
Confidence 3456789999999997632 223445566554433345689999999999976433323334444444554 5999999
Q ss_pred CCCcChHHHHHHHHHh
Q 014461 298 LKGAGLKALTQYLMEQ 313 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~ 313 (424)
++|.|++++++++.+.
T Consensus 145 ~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 145 LTGENVEEAFLKCARS 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999875
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=5.6e-20 Score=168.86 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=106.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
+||+++|.+|||||||+++|.+..+.. ...+..+.+.....+... ...+.+|||||...+. ....
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~-~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~---------~l~~-- 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGK-SYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG---------KMLD-- 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH---------HHHH--
Confidence 479999999999999999999876642 112222223222223322 3568899999975331 1111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc---CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~---~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..+..+|++++|+|+++..+ ...+..|+..+.. ....+.|+++|+||+|+...+....+....+....+. .++
T Consensus 69 -~~~~~ad~iilV~D~t~~~s--~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~-~~~ 144 (215)
T cd04109 69 -KYIYGAHAVFLVYDVTNSQS--FENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM-ESC 144 (215)
T ss_pred -HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC-EEE
Confidence 23678999999999975322 2333344443322 2123468999999999975444444445556655565 489
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++||++|.|++++|++|.+.+..
T Consensus 145 ~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 145 LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999988754
No 58
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.84 E-value=6.9e-20 Score=166.48 Aligned_cols=162 Identities=21% Similarity=0.189 Sum_probs=106.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++|+++|.+|||||||+++|++..+... ..+....+.....+..+ ...+.+|||||...+. ...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~-~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---------~~~--- 67 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH-YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---------GMT--- 67 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh---------hhH---
Confidence 4799999999999999999998765321 11111112222223333 4468899999975331 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc----cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG----KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~----~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|+++..+ ...+..|+..+. .....+.|+++|+||+|+........+....+....++..+
T Consensus 68 ~~~~~~a~~~ilv~D~t~~~s--~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 145 (201)
T cd04107 68 RVYYRGAVGAIIVFDVTRPST--FEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGW 145 (201)
T ss_pred HHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceE
Confidence 234678899999999975322 223333433322 11224589999999999974333334445566666665569
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 146 ~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 146 FETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 59
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=5.8e-20 Score=161.13 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=102.7
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||+|++++..+.. ...+..+.+..... .......+.+|||||...+. . . ..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-~--~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL---------E-V--RN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH---------H-H--HH
Confidence 479999999999999999999887642 11121111111111 22334578899999975321 1 1 12
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-----CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-----PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+..+|++++|+|.++.. ....+..|+..+..... .+.|+++|+||+|+.............+....+. ++
T Consensus 68 ~~~~~~d~~ilv~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 144 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQ--SFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF-KY 144 (168)
T ss_pred HHhccCCEEEEEEECCCHH--HHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC-eE
Confidence 2357789999999997532 22334455554432221 3589999999999974322223333334444444 49
Q ss_pred EEEecCCCcChHHHHHHHHHhc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l 314 (424)
+++||++|.|+++++++|.+.+
T Consensus 145 ~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 145 FETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998765
No 60
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.84 E-value=1.2e-19 Score=158.95 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=106.2
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|++|+|||||++++.++.+... ..+....+.....+...+ ..+.+|||||...+.. . ..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---------~---~~ 67 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSS-HISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT---------I---TK 67 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh---------h---HH
Confidence 3799999999999999999998776421 122222222222233333 4678999999754311 1 11
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|.++. .....+..|+..+......+.|+++|+||+|+...+....+....+.+..+. +++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~--~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa 144 (161)
T cd04117 68 QYYRRAQGIFLVYDISSE--RSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGM-DFFETSA 144 (161)
T ss_pred HHhcCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCC-EEEEEeC
Confidence 235778999999999753 2334455666655433334589999999999976543333445555555554 5999999
Q ss_pred CCCcChHHHHHHHHHh
Q 014461 298 LKGAGLKALTQYLMEQ 313 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~ 313 (424)
++|.|++++|++|.+.
T Consensus 145 ~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 145 CTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999864
No 61
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.83 E-value=8e-20 Score=162.25 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=109.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+||+++|.+|||||||+.++..+.+. .....|........+..+ ...+.+|||+|...+.... .
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~--~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~------------~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLR------------P 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCC--CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccc------------h
Confidence 57999999999999999999987764 222222222222222233 3568899999986553211 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL 286 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~ 286 (424)
..++.+|++++|+|.++..+. ..+ ..|+.++.... ++.|+++|+||+|+.+.+ ....+..+.+...
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf--~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~ 144 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASY--ENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ 144 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH
Confidence 246789999999999764332 233 34666554322 358999999999996532 1334456667766
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+...+++|||++|.||+++|+.+.+.+.
T Consensus 145 ~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 145 IGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred cCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 66656999999999999999999998763
No 62
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.83 E-value=1.1e-19 Score=160.53 Aligned_cols=159 Identities=15% Similarity=0.068 Sum_probs=104.4
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|||||||++++.+..+. . +.+|.......+...+..+.+|||||...+.. .....+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------~~~~~~ 64 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------LWKHYY 64 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcch------------HHHHHh
Confidence 5899999999999999999987542 2 22232222233556778899999999864311 112335
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC-----CCeEEE
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-----YERIFM 294 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~ 294 (424)
..+|++++|+|+++.. .......++..+... ...+.|+++|+||+|+... ....+ ...+..... ...+++
T Consensus 65 ~~ad~ii~V~D~s~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 65 LNTQAVVFVVDSSHRD--RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-LSVEE-MTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred ccCCEEEEEEeCCcHH--HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-CCHHH-HHHHhCCccccCCCcEEEEe
Confidence 7789999999997532 122334444444322 1234789999999999653 12222 223222221 114789
Q ss_pred EecCCCcChHHHHHHHHHhccCCCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
+||++|.|++++|++|.+.+.++++
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQLVAAGV 165 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHHhhccc
Confidence 9999999999999999998876654
No 63
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.83 E-value=8.9e-20 Score=158.94 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=101.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||+|++++..+. .....++.......+..++ ..+.+|||||...+. .+..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~l~~--- 67 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------AMRD--- 67 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH---------HHHH---
Confidence 57999999999999999999987753 2333333332222233333 347789999975431 1111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++.. ....+..++..+... ...+.|+++|+||+|+... .........+....+. +++++|
T Consensus 68 ~~~~~~~~~i~v~~~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S 143 (162)
T cd04138 68 QYMRTGEGFLCVFAINSRK--SFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR-TVSSRQGQDLAKSYGI-PYIETS 143 (162)
T ss_pred HHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc-eecHHHHHHHHHHhCC-eEEEec
Confidence 2356789999999997532 222233333332221 1235799999999999763 2222333444444444 499999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 144 AKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 64
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.83 E-value=6.9e-20 Score=162.96 Aligned_cols=155 Identities=17% Similarity=0.232 Sum_probs=97.9
Q ss_pred EEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEE-----ecCCccEEEEeCCCcccCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVM-----TKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~-----~~~~~~i~l~DtpG~~~~~ 201 (424)
+|+++|++|+|||||+++|++..... ..+ ..++|.......+ ...+..+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998642110 000 1123332221112 2345668899999986431
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE 281 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 281 (424)
... ...+..+|++++|+|++++.+.........+.. .+.|+++|+||+|+.... .....+
T Consensus 82 ---------~~~---~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~------~~~~iiiv~NK~Dl~~~~--~~~~~~ 141 (179)
T cd01890 82 ---------YEV---SRSLAACEGALLLVDATQGVEAQTLANFYLALE------NNLEIIPVINKIDLPSAD--PERVKQ 141 (179)
T ss_pred ---------HHH---HHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH------cCCCEEEEEECCCCCcCC--HHHHHH
Confidence 112 234567899999999986544333222222221 247899999999986532 112223
Q ss_pred HHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 282 QFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 282 ~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+.+..+. ..++++||++|.|+++|+++|.+.++
T Consensus 142 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 QIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 33333232 24899999999999999999998774
No 65
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=8.2e-20 Score=164.13 Aligned_cols=161 Identities=20% Similarity=0.192 Sum_probs=106.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++.+..+.... .+..+.+.....+..+ ...+.+|||||...+. . ...
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---------~---~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSEST-KSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---------S---LNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---------h---hHH
Confidence 47999999999999999999988764211 1111111111222222 3457899999965321 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++. .....+..|+..+........|+++|+||+|+.+...........+....+. +++++||
T Consensus 68 ~~~~~~d~iilv~d~~~~--~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa 144 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQ--ESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI-PFFETSA 144 (188)
T ss_pred HHccCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC-eEEEEeC
Confidence 346789999999999763 2334455666655443334578999999999975432223333445444455 5999999
Q ss_pred CCCcChHHHHHHHHHhccC
Q 014461 298 LKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~ 316 (424)
++|.|+++++++|.+.+..
T Consensus 145 ~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 145 KQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999887753
No 66
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=7e-20 Score=158.28 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=126.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee--EEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~--~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
..-+||+++|.+|||||.|+.++.+..+.. ....|.. ..... +......+.+|||.|+..++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e---~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFr----------- 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE---SYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFR----------- 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcch---hhcceeeeEEEEEEeeecceEEEEEeeeccccHHHh-----------
Confidence 346899999999999999999999877642 1222221 11222 33344568999999986552
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+.++++.|++||+|+|.++ ......+..|+.+.......+.|.++|+||+|+.+.+....+..+.|....+.+.+
T Consensus 73 -tit~syYR~ahGii~vyDiT~--~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f 149 (205)
T KOG0084|consen 73 -TITSSYYRGAHGIIFVYDITK--QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIF 149 (205)
T ss_pred -hhhHhhccCCCeEEEEEEccc--HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcce
Confidence 223456889999999999986 33445678899998887777789999999999998777777778889988888779
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++|||++.|+++.|..|...+..
T Consensus 150 ~ETSAK~~~NVe~~F~~la~~lk~ 173 (205)
T KOG0084|consen 150 LETSAKDSTNVEDAFLTLAKELKQ 173 (205)
T ss_pred eecccCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999877754
No 67
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.83 E-value=1.3e-19 Score=160.96 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=104.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++..+.+. .....|........+..++ ..+.+|||||...+.. +. .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~--~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDR----------LR--P 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhh----------hh--h
Confidence 58999999999999999999987763 3333333332222233344 5678999999865421 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (424)
..+..+|++++|+|.++..+ ...+. .|+..+.... ++.|+++|+||+|+..... ...+..+.+.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s--~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSS--FENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhcccCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHH
Confidence 24678899999999976422 22232 3444443222 3589999999999865321 1122233444
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...+...+++|||++|.|++++|+.+...+
T Consensus 145 ~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 145 RDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred HHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 444544699999999999999999988743
No 68
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.83 E-value=5.9e-20 Score=162.56 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=107.5
Q ss_pred EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (424)
Q Consensus 144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (424)
++|++|||||||+|+|.+... .+++.+++|.....+.+... +.++.+|||||+....... .......+..+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~-----~~~~~~~~~~~~~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG-----RGLGNQFLAHIRR 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC-----CCccHHHHHHHhc
Confidence 589999999999999999876 46777888877776666666 8899999999985422111 0112233445667
Q ss_pred ccEEEEEEeCCCCC----CCchHHHHHHHHHhccCC-------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461 223 FEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQA-------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 223 aD~vl~VvD~~~~~----~~~~~~~~~~l~~~~~~~-------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
+|++++|+|+++.. .........+...+.... ..+.|+++|+||+|+................. ....
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~ 153 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE-EGAE 153 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC-CCCC
Confidence 89999999997642 122222222222222111 12479999999999976432221111122222 2335
Q ss_pred EEEEecCCCcChHHHHHHHHHh
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
++++||++|.|++++++++...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998764
No 69
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=193.60 Aligned_cols=164 Identities=28% Similarity=0.363 Sum_probs=126.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..+|+++|.||||||||+|+|++.+.+.+++.+++|++.......+.+..+.+|||||+...... ........+..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~----~~~~~~~~~~~ 350 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEG----IDSAIASQAQI 350 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCcc----HHHHHHHHHHH
Confidence 46899999999999999999999988889999999999888777778889999999998643211 11223445556
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|++.+....+..+.++++.. +.|+++|+||+|+...... ...+.. .++...+++||+
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~------~~pvIlV~NK~D~~~~~~~----~~~~~~-lg~~~~~~iSA~ 419 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTSTDERIVRMLRRA------GKPVVLAVNKIDDQASEYD----AAEFWK-LGLGEPYPISAM 419 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEECcccccchhh----HHHHHH-cCCCCeEEEECC
Confidence 67889999999999877666666666666542 4899999999998653211 122221 244457899999
Q ss_pred CCcChHHHHHHHHHhccCC
Q 014461 299 KGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~~ 317 (424)
+|.|+++|+++|.+.++..
T Consensus 420 ~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCchHHHHHHHHhcccc
Confidence 9999999999999988653
No 70
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=1.2e-19 Score=161.65 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=104.9
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEec------------CCccEEEEeCCCcccCCCCCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTK------------ADTQICIFDTPGLMLNKSGYS 205 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~------------~~~~i~l~DtpG~~~~~~~~~ 205 (424)
.++|+++|.+|||||||++++.+..+.. ....+. .+.....+.. ....+.+|||||...+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP--KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR---- 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc--cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH----
Confidence 4789999999999999999999876532 111111 1111111111 23568899999965321
Q ss_pred hhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFK 284 (424)
Q Consensus 206 ~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 284 (424)
......++.+|++++|+|+++. .....+..|+..+.... .++.|+++|+||+|+...+....+....+.
T Consensus 78 --------~~~~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~ 147 (180)
T cd04127 78 --------SLTTAFFRDAMGFLLIFDLTNE--QSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALA 147 (180)
T ss_pred --------HHHHHHhCCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHH
Confidence 1122346789999999999752 22334555665543321 235789999999999764333334455565
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...+. +++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~-~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DKYGI-PYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHcCC-eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 55565 499999999999999999998765
No 71
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=1.2e-19 Score=184.30 Aligned_cols=160 Identities=26% Similarity=0.365 Sum_probs=123.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+|+++|.+|||||||+|+|++...+.+++.+++|++.........+..+.+|||||+..... .........+...
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~----~~~~~~~~~~~~~ 77 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD----GFEKQIREQAELA 77 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch----hHHHHHHHHHHHH
Confidence 479999999999999999999998878889999999888777888889999999999875211 1112233344556
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|++++|+|++++.+..+..+.++++.. +.|+++|+||+|+...... ..++. ..++..++++||++
T Consensus 78 ~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSa~~ 146 (435)
T PRK00093 78 IEEADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVVNKVDGPDEEAD----AYEFY-SLGLGEPYPISAEH 146 (435)
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEEECccCccchhh----HHHHH-hcCCCCCEEEEeeC
Confidence 7889999999999877776666777777764 3789999999997652221 12222 23555689999999
Q ss_pred CcChHHHHHHHHHhc
Q 014461 300 GAGLKALTQYLMEQA 314 (424)
Q Consensus 300 g~gi~~L~~~i~~~l 314 (424)
|.|++++++.|.+..
T Consensus 147 g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 147 GRGIGDLLDAILEEL 161 (435)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998854
No 72
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.83 E-value=1.7e-19 Score=159.09 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=99.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|.+|||||||+++|....+... .+.+..+ .......+..+.+|||||...+. .. ..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~t~g~~--~~~~~~~~~~~~l~Dt~G~~~~~---------~~---~~ 71 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTT--IPTVGFN--VETVTYKNVKFNVWDVGGQDKIR---------PL---WR 71 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccc--cCCcccc--eEEEEECCEEEEEEECCCCHHHH---------HH---HH
Confidence 468999999999999999999987655322 2211111 11233467789999999975321 11 12
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CC-CCeE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PG-YERI 292 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~-~~~~ 292 (424)
..+..+|++++|+|+++..+ ...+..++.+.... ...+.|+++|+||+|+... ....+ ++.+... .. ...+
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~-i~~~~~~~~~~~~~~~~ 147 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDR--IDEARQELHRIINDREMRDALLLVFANKQDLPDA-MKPHE-IQEKLGLTRIRDRNWYV 147 (168)
T ss_pred HHhccCCEEEEEEeCCchhh--HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC-CCHHH-HHHHcCCCccCCCcEEE
Confidence 34678999999999976422 23334444433221 1235799999999998652 11122 2222211 11 1258
Q ss_pred EEEecCCCcChHHHHHHHHH
Q 014461 293 FMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~ 312 (424)
+++||++|.|+++++++|.+
T Consensus 148 ~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 148 QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEeeCCCCCChHHHHHHHhc
Confidence 99999999999999999975
No 73
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.3e-19 Score=189.77 Aligned_cols=167 Identities=18% Similarity=0.315 Sum_probs=121.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|+||||||||+|+|+|.+. .+++.+++|.+...+.+...+.++.++||||+.+...........+.+.+.+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 357899999999999999999998765 5889999999988888888888999999999976532111011122232323
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.....+|++++|+|+++. .. ...+...+.+. +.|+++|+||+|+.+.+ ......+.+.+..+.+ ++++||
T Consensus 81 l~~~~aD~vI~VvDat~l-er-~l~l~~ql~e~------giPvIvVlNK~Dl~~~~-~i~id~~~L~~~LG~p-VvpiSA 150 (772)
T PRK09554 81 ILSGDADLLINVVDASNL-ER-NLYLTLQLLEL------GIPCIVALNMLDIAEKQ-NIRIDIDALSARLGCP-VIPLVS 150 (772)
T ss_pred HhccCCCEEEEEecCCcc-hh-hHHHHHHHHHc------CCCEEEEEEchhhhhcc-CcHHHHHHHHHHhCCC-EEEEEe
Confidence 334578999999999752 22 22233334333 47899999999987542 2233345566666765 999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|++++++.+.+...
T Consensus 151 ~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQA 168 (772)
T ss_pred ecCCCHHHHHHHHHHhhh
Confidence 999999999999988764
No 74
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.83 E-value=9.5e-20 Score=160.42 Aligned_cols=160 Identities=14% Similarity=0.158 Sum_probs=101.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++|+++|.+|||||||+++++...+.. .....+................+.+|||||...+.. ... .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~--~ 68 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG----------LRD--G 68 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc----------ccH--H
Confidence 479999999999999999998665421 111111111111111122335688999999864421 101 1
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|+++.. ....+..|+..+..... +.|+++|+||+|+.... .. .....+..... ..++++||+
T Consensus 69 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~~-~~-~~~~~~~~~~~-~~~~e~Sa~ 142 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRV--TYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VK-AKQITFHRKKN-LQYYEISAK 142 (166)
T ss_pred HhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCC-CCcEEEEEEchhccccc-CC-HHHHHHHHHcC-CEEEEEeCC
Confidence 346789999999997532 22334455555543322 58999999999997432 11 12233433333 359999999
Q ss_pred CCcChHHHHHHHHHhccCC
Q 014461 299 KGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~~ 317 (424)
+|.|+++++++|.+.+...
T Consensus 143 ~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 143 SNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred CCCChHHHHHHHHHHHHhc
Confidence 9999999999999887543
No 75
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.83 E-value=9.8e-20 Score=159.43 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=101.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++..+.+.. ....|........+..++ ..+.+|||||...+.. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~--- 67 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFAS---------MRD--- 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCcccccc---------hHH---
Confidence 589999999999999999999876642 222222222222233333 3577899999765421 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++..+ ...+..|+..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQT--FQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGC-PFMETS 144 (163)
T ss_pred HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCC-EEEEec
Confidence 13567899999999976322 22333443333221 123589999999999865332222233444443444 589999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|++++++++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 145 AKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998764
No 76
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=3.8e-19 Score=178.96 Aligned_cols=162 Identities=27% Similarity=0.349 Sum_probs=119.1
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....+++|+++|.||||||||+|+|++...+.+++.++||++.....+..++.++.+|||||+..... ......+.
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~----~ie~~gi~ 274 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD----FVERLGIE 274 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh----HHHHHHHH
Confidence 34467899999999999999999999988777899999999988887888889999999999865321 00122345
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+...+..+|++++|+|++++.+..+. ++..... .+.|+++|+||+|+... .. +.+....+. +++.
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~----~l~~~~~---~~~piIlV~NK~Dl~~~--~~----~~~~~~~~~-~~~~ 340 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDF----LIIDLNK---SKKPFILVLNKIDLKIN--SL----EFFVSSKVL-NSSN 340 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHH----HHHHHhh---CCCCEEEEEECccCCCc--ch----hhhhhhcCC-ceEE
Confidence 566778899999999999865543322 3333321 24789999999999653 11 122222333 3889
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++ .||+++++.|.+.+.
T Consensus 341 vSak~-~gI~~~~~~L~~~i~ 360 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKIN 360 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHH
Confidence 99998 588888888777664
No 77
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.83 E-value=1.5e-19 Score=165.80 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=102.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
++|+++|.+|||||||++++++..+... .+ |..............+.+|||||...+.. +.. ..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~--~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~----------l~~--~~ 64 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT--VS--TVGGAFYLKQWGPYNISIWDTAGREQFHG----------LGS--MY 64 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC--CC--ccceEEEEEEeeEEEEEEEeCCCcccchh----------hHH--HH
Confidence 4799999999999999999998877421 11 22111122233456789999999864421 111 23
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC-------------------ChhhHHHHH
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-------------------KKKDLLKVA 280 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~-------------------~~~~~~~~~ 280 (424)
+..+|++|+|+|+++..+ ...+..++..+......+.|+++|+||+|+.. .+....+..
T Consensus 65 ~~~ad~~IlV~Dvt~~~S--f~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~ 142 (220)
T cd04126 65 CRGAAAVILTYDVSNVQS--LEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDA 142 (220)
T ss_pred hccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHH
Confidence 578899999999976432 22333333333222234589999999999965 122222333
Q ss_pred HHHhcCCC-------------CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 281 EQFKHLPG-------------YERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 281 ~~~~~~~~-------------~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+.+..+ ..++++|||++|.||+++|+.+.+.+.
T Consensus 143 ~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 143 KAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 44443322 135999999999999999999988764
No 78
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=162.73 Aligned_cols=161 Identities=12% Similarity=0.118 Sum_probs=104.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||++++.+..+.. ....|........+..+ ...+.+|||||...+.. ...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------l~~- 71 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSA---------MRD- 71 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchh---------hHH-
Confidence 45899999999999999999999876642 22222222222222223 34577999999865421 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|++++|+|+++..+ ...+..|+..+... ...+.|+++|+||+|+.............+....+. ++++
T Consensus 72 --~~~~~~d~iilv~D~s~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e 146 (189)
T PTZ00369 72 --QYMRTGQGFLCVYSITSRSS--FEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGI-PFLE 146 (189)
T ss_pred --HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCC-EEEE
Confidence 23567899999999976432 22334444433221 123579999999999865422222223334433444 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 147 ~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 147 TSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred eeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 79
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.83 E-value=2.3e-19 Score=177.71 Aligned_cols=255 Identities=18% Similarity=0.169 Sum_probs=163.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------------CCccEEEEeCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTP 195 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~i~l~Dtp 195 (424)
++|+++|.||||||||+|+|++... .+++++++|..+..+.... ...++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5799999999999999999998876 4688899998887765331 12457899999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-----------CCch------------------------
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-----------TSPD------------------------ 240 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-----------~~~~------------------------ 240 (424)
|+..... .....-...+..++.+|++++|+|+.... .++.
T Consensus 81 Gl~~ga~-----~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~ 155 (396)
T PRK09602 81 GLVPGAH-----EGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEK 155 (396)
T ss_pred CcCCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9875321 11123445667789999999999996211 0000
Q ss_pred ---------------------------HHHHHHHHHhccC------------------CCCCCcEEEEEecCCCCCChhh
Q 014461 241 ---------------------------SRVIRLIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKD 275 (424)
Q Consensus 241 ---------------------------~~~~~~l~~~~~~------------------~~~~~p~ilV~NK~Dl~~~~~~ 275 (424)
..+.++|++.+.. ....+|+++|+||+|+......
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~ 235 (396)
T PRK09602 156 FSRKAQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN 235 (396)
T ss_pred HHHHHhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH
Confidence 0011111111100 0124899999999997643222
Q ss_pred HHHHHHHHhcCCCCCeEEEEecCCCcChHH-HHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcc
Q 014461 276 LLKVAEQFKHLPGYERIFMTSGLKGAGLKA-LTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYS 354 (424)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~-L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~ 354 (424)
+. .+.+. ++..++++||+.+.++++ +.+.+.++++.+++.|+.+..+++..+ ++|++| +++..+.- +-
T Consensus 236 l~----~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r--~~E~IR-k~l~~~g~--~~- 304 (396)
T PRK09602 236 IE----RLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKK--ALEYIR-EVLKKYGG--TG- 304 (396)
T ss_pred HH----HHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHH--HHHHHH-HHHHHhCC--ch-
Confidence 22 22222 556699999999999999 899999999999999999999988877 789999 88887652 10
Q ss_pred eEEEEEEEEeccCCeEEEEEEEEeeC------CCcccEEeccCCchHHHHHHHHHHHHHHhcC
Q 014461 355 IEHRLIDWKDLRDGSLRIEQHLITNK------LSQRKILVGKNGSKIGRIGVEANEELRSIFK 411 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~i~~~i~~~~------~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~ 411 (424)
+...+....+..=+.+++...---.+ ..-...++=++|++..+.+-..|.++++-|.
T Consensus 305 ~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi 367 (396)
T PRK09602 305 VQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFL 367 (396)
T ss_pred HHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhce
Confidence 00000000000001222222100000 0111233337799999999999999998774
No 80
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.82 E-value=1.8e-19 Score=162.56 Aligned_cols=159 Identities=19% Similarity=0.312 Sum_probs=103.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCc------ceeecCCCCceeeEEEEEEecC--------------CccEEEEeCCCccc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKA--------------DTQICIFDTPGLML 199 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~------~~~~~~~~~tt~~~~~~~~~~~--------------~~~i~l~DtpG~~~ 199 (424)
.+|+++|++|+|||||+++|++.. ....+..+++|.......+... +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998631 1112233455655443333322 66899999999742
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--h-H
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--D-L 276 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~-~ 276 (424)
.....+.....+|++++|+|++++..........+.... +.|+++|+||+|+..... . .
T Consensus 81 ------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~~~~~~ 142 (192)
T cd01889 81 ------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVLNKIDLIPEEERERKI 142 (192)
T ss_pred ------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHH
Confidence 134444556778999999999865443333222322222 368999999999975321 1 1
Q ss_pred HHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 277 LKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 277 ~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.+..+.+... ....+++++||++|.|+++|+++|.++++.
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 2222222111 122359999999999999999999998853
No 81
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=8.2e-19 Score=153.89 Aligned_cols=169 Identities=23% Similarity=0.309 Sum_probs=122.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh-hhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH-KDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~-~~~~~~~~~ 215 (424)
...-|+++|.+|||||||||+|++.+ .+.++..||.|+......+ +..+.++|.||+.-....... +....++..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 56789999999999999999999965 6889999999987665333 233899999998743221111 112334444
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh---HHHHHHHHhcCCCCC-e
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LLKVAEQFKHLPGYE-R 291 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~~~~~~~~~-~ 291 (424)
++..-..-.++++++|+.......+..+.+|+.+.+ .|+++|+||+|.....+. +....+.+....... .
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~------i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~ 173 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELG------IPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQW 173 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccce
Confidence 444444568899999999888888889999999875 889999999999985322 122222332222221 2
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++..|+.++.|++++.+.|.+.+.
T Consensus 174 ~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred EEEEecccccCHHHHHHHHHHHhh
Confidence 788899999999999999988764
No 82
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=1.7e-19 Score=165.23 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=104.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
..++|+++|.+|||||||+++|++..+.......+.+.......+......+.+|||||...+. ... .
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~---~ 80 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR---------TLT---S 80 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH---------HHH---H
Confidence 4689999999999999999999987764333222222221111122233578999999976431 111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..++.+|++++|+|+++..+.... .+...+.... ...+.|+++|+||+|+........+....+....+. .++++
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~--~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~-~~~e~ 157 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS--TNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGC-LFLEC 157 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-EEEEE
Confidence 235678999999999753221111 1222222221 122468999999999975433222233334333444 48999
Q ss_pred ecCCCcChHHHHHHHHHhccCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
||++|.|+++++++|.+.+...+
T Consensus 158 SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 158 SAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred eCCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999999886544
No 83
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.82 E-value=9.9e-20 Score=163.68 Aligned_cols=158 Identities=21% Similarity=0.372 Sum_probs=111.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCccee-----------------ecCCCCceeeEEEEEEe--cCCccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-----------------VSRKTNTTTHEVLGVMT--KADTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-----------------~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~ 198 (424)
+..+|+++|+.++|||||+++|++..... .....+.|.......+. ..+..+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35789999999999999999998532110 01112344444444455 678899999999975
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 278 (424)
.+ .......+..+|++++|+|+..+........+..+...+ .|+++|+||+|+.. ..+.+
T Consensus 82 ~f------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~------~p~ivvlNK~D~~~--~~~~~ 141 (188)
T PF00009_consen 82 DF------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG------IPIIVVLNKMDLIE--KELEE 141 (188)
T ss_dssp HH------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-------SEEEEEETCTSSH--HHHHH
T ss_pred ce------------eecccceecccccceeeeecccccccccccccccccccc------cceEEeeeeccchh--hhHHH
Confidence 32 334445577889999999998877666666666666654 78999999999983 33333
Q ss_pred HHHHHh----cCCC-----CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 279 VAEQFK----HLPG-----YERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 279 ~~~~~~----~~~~-----~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+++. +..+ ..+++++||++|.|+++|++.|.+.+|
T Consensus 142 ~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 142 IIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 333322 1121 346999999999999999999999885
No 84
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.82 E-value=2.3e-19 Score=155.93 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=106.5
Q ss_pred EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccc
Q 014461 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLF 223 (424)
Q Consensus 144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~a 223 (424)
++|.+|||||||+|++.+.. ..++..+++|.......+..++..+.+|||||+....... .. .......+.. ..+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~--~~~~~~~~~~-~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS-ED--EKVARDFLLG-EKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC-hh--HHHHHHHhcC-CCC
Confidence 57999999999999999876 3466778888877666666777889999999987543211 00 1112222222 588
Q ss_pred cEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (424)
Q Consensus 224 D~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 303 (424)
|++++|+|+++. .....+...+... +.|+++|+||+|+..... .....+.+....+. +++++||++|.|+
T Consensus 76 d~vi~v~d~~~~--~~~~~~~~~~~~~------~~~~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~-~~~~iSa~~~~~~ 145 (158)
T cd01879 76 DLIVNVVDATNL--ERNLYLTLQLLEL------GLPVVVALNMIDEAEKRG-IKIDLDKLSELLGV-PVVPTSARKGEGI 145 (158)
T ss_pred cEEEEEeeCCcc--hhHHHHHHHHHHc------CCCEEEEEehhhhccccc-chhhHHHHHHhhCC-CeEEEEccCCCCH
Confidence 999999999752 2222222233322 478999999999976422 22223344444454 4999999999999
Q ss_pred HHHHHHHHHhc
Q 014461 304 KALTQYLMEQA 314 (424)
Q Consensus 304 ~~L~~~i~~~l 314 (424)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (158)
T cd01879 146 DELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 85
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.82 E-value=2.2e-19 Score=160.52 Aligned_cols=161 Identities=14% Similarity=0.194 Sum_probs=105.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
+||+++|.+|||||||++++++..+.. ....|.. +.....+..++ ..+.+|||+|...+.. ..
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~--~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~---------~~--- 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDE--DYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN---------ML--- 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHH---------hh---
Confidence 479999999999999999999877642 2222221 21112233333 4688999999764311 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----hhhHHHHHHHHhcCCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~~~ 291 (424)
...+..+|++++|+|+++.. ....+..|+..+........| ++|+||+|+... .....+..+.+.+..+. +
T Consensus 67 ~~~~~~a~~iilv~D~t~~~--s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~ 142 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKS--TLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKA-P 142 (182)
T ss_pred HHHCcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCC-E
Confidence 12467899999999997632 223444555555432223456 688999999531 11223445556655564 5
Q ss_pred EEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
++++||++|.|++++|+++.+.+..-+
T Consensus 143 ~~e~SAk~g~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 143 LIFCSTSHSINVQKIFKIVLAKAFDLP 169 (182)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998886544
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.82 E-value=2.7e-19 Score=156.34 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=102.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe----cCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT----KADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
++|+++|.+|+|||||++++.+..+... ..+....+.....+. .....+.+|||||...+. . .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~-~-- 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKD-YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD---------A-I-- 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH---------H-h--
Confidence 3799999999999999999998765321 111111221111122 224568999999964321 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....++.+|++++|+|+++.. ....+..|+..+... ..+.|+++|+||+|+........+....+....+. +++++
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~--s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 143 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRE--SFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL-PLFRT 143 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC-eEEEE
Confidence 123467889999999997532 223445555554322 23589999999999976433223334445555555 49999
Q ss_pred ecCCCcChHHHHHHHHHh
Q 014461 296 SGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~ 313 (424)
||++|.|+++++++|.+.
T Consensus 144 Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 144 SVKDDFNVTELFEYLAEK 161 (162)
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 999999999999999764
No 87
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.82 E-value=2e-19 Score=158.05 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred EEEEEecCCCChhHHHHhHhCCcce---eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+|+++|++|+|||||+|+|.+.... .......+|.......+..++..+.+|||||..... . ...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~---~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---------S---LWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH---------H---HHH
Confidence 4899999999999999999864321 111222334333334455668899999999975321 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CC--CCe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PG--YER 291 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~--~~~ 291 (424)
..+..+|++++|+|+++.. .......++..+... ...+.|+++|+||+|+... ....+..+.+... .+ ..+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRE--RFEESKSALEKVLRNEALEGVPLLILANKQDLPDA-LSVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHH--HHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC-CCHHHHHHHhccccccccCCceE
Confidence 3467889999999996532 122233344333221 1235899999999998664 2222222222211 11 126
Q ss_pred EEEEecCCCcChHHHHHHHHH
Q 014461 292 IFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~ 312 (424)
++++||++|.|+++++++|.+
T Consensus 146 ~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCcCHHHHHHHHhc
Confidence 999999999999999999975
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.82 E-value=3.3e-19 Score=156.16 Aligned_cols=159 Identities=21% Similarity=0.288 Sum_probs=101.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEE--Ee-cCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGV--MT-KADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~--~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
++|+++|.+|||||||++++.+...........++. +..... +. .....+.+|||||...+ ..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~- 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY---------SDMVS- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH---------HHHHH-
Confidence 379999999999999999998642111223332321 111111 21 23467899999996432 11222
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+..+|++++|+|.++.. ....+..|+..+.... .+.|+++|+||+|+...........+.+....+. +++++
T Consensus 71 --~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 144 (164)
T cd04101 71 --NYWESPSVFILVYDVSNKA--SFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQL-KFFKT 144 (164)
T ss_pred --HHhCCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence 3457889999999997532 2233445555544332 3489999999999965432222223344444444 48999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|.|++++++.|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 145 SALRGVGYEEPFESLARAF 163 (164)
T ss_pred eCCCCCChHHHHHHHHHHh
Confidence 9999999999999998764
No 89
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.82 E-value=7.7e-19 Score=158.61 Aligned_cols=170 Identities=18% Similarity=0.256 Sum_probs=112.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~ 214 (424)
....+|+++|.+|||||||+|+|++.. ...++..+++|+...... . +.++.+|||||+........ .........
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 356889999999999999999999875 556677777776644322 2 47899999999764321110 011112233
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 292 (424)
..+.....++++++|+|++.+....+..+..++... +.|+++++||+|+..... .....+..+.... ...+
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~------~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~~~ 171 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY------GIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DDEV 171 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc------CCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CCce
Confidence 333444456789999998765555444455555443 378999999999976421 1111122222221 2358
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|++++++.|.+.+.+
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999988754
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.82 E-value=3.1e-19 Score=155.83 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=101.7
Q ss_pred eEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++|+++|++|||||||+|+|.+..+.. .....+.+.......+.....++.+|||||...+. .....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~ 68 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR------------TLTSS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh------------hhhHH
Confidence 479999999999999999999876643 22222222222221222334578999999965321 11122
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.++.+|++++|+|.++..+ ...+..|+..+... ...+.|+++|+||+|+....... +....+....++ .++++||
T Consensus 69 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~-~~~~~~~~~~~~-~~~~~Sa 144 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDT--FTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTR-EEGLKFARKHNM-LFIETSA 144 (161)
T ss_pred HhCCCCEEEEEEECCCHHH--HHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCH-HHHHHHHHHcCC-EEEEEec
Confidence 3567899999999975332 22333444433221 23458899999999997432222 233444444455 4999999
Q ss_pred CCCcChHHHHHHHHHh
Q 014461 298 LKGAGLKALTQYLMEQ 313 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~ 313 (424)
++|.|++++++.+.+.
T Consensus 145 ~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 145 KTRDGVQQAFEELVEK 160 (161)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999998875
No 91
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.82 E-value=2.9e-19 Score=162.11 Aligned_cols=161 Identities=19% Similarity=0.185 Sum_probs=105.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|++|||||||++++.+..+... ..+....+.....+...+ ..+.+|||||...+. . .
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~---~ 71 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGS-YITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---------T---I 71 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---------H---H
Confidence 358999999999999999999998765321 111111111111222223 468899999975321 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++. .....+..|+..+.... +..|+++|+||+|+.............+....+. .++++
T Consensus 72 ~~~~~~~a~~iilv~D~~~~--~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~ 147 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNG--ESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGI-SLFET 147 (199)
T ss_pred HHHHhCCCcEEEEEEECCCH--HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence 12345778999999999763 22334555666554322 3579999999999976433333334444444454 49999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.||++++++|.+.+.
T Consensus 148 Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 148 SAKENINVEEMFNCITELVL 167 (199)
T ss_pred ECCCCcCHHHHHHHHHHHHH
Confidence 99999999999999988774
No 92
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.82 E-value=2.2e-19 Score=155.31 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=102.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|+|||||+|++.+...... ..+..+.......+. .....+.+||+||.... .....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------------~~~~~ 67 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF------------RSITP 67 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHH------------HHHHH
Confidence 4799999999999999999998877543 111111111122222 23467889999997432 11223
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++. .....+..|+..+........|+++|+||+|+........+....+....+. +++++||
T Consensus 68 ~~~~~~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~sa 144 (159)
T cd00154 68 SYYRGAHGAILVYDITNR--ESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGL-LFFETSA 144 (159)
T ss_pred HHhcCCCEEEEEEECCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCC-eEEEEec
Confidence 345778999999999752 2223344455544433334589999999999963333333444455544444 4999999
Q ss_pred CCCcChHHHHHHHH
Q 014461 298 LKGAGLKALTQYLM 311 (424)
Q Consensus 298 ~~g~gi~~L~~~i~ 311 (424)
++|.|+++++++|.
T Consensus 145 ~~~~~i~~~~~~i~ 158 (159)
T cd00154 145 KTGENVEELFQSLA 158 (159)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999886
No 93
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.82 E-value=3.6e-19 Score=158.72 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=103.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~ 214 (424)
.+..+|+++|.+|+|||||+|+|++.. ...++..+++|.+...... + ..+.+|||||+........ .........
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 457899999999999999999999875 5556777777776543322 2 4799999999754321111 011122222
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCCCe
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYER 291 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~ 291 (424)
..+.....+|++++|+|++++.+..+..+..++... +.|+++|+||+|+..... ...+..+.+.......+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~------~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER------GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 333333457899999999876666555555555442 378999999999975321 12222223332211236
Q ss_pred EEEEecCCCcChH
Q 014461 292 IFMTSGLKGAGLK 304 (424)
Q Consensus 292 ~~~iSA~~g~gi~ 304 (424)
+|++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999974
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.82 E-value=2.9e-19 Score=157.58 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=103.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|++|||||||+|++.+..+.... .+..+.+.....+... ...+.+|||||...+. ....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------------~~~~ 67 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQY-KATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ------------SLGV 67 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCc-CCccceEEEEEEEEECCEEEEEEEEeCCChHHHH------------hHHH
Confidence 47999999999999999999987654211 1111212111222233 3457799999975321 1112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHH----hccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER----MGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~----~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..++.+|++++|+|+++..+ ...+..|... .......+.|+++|+||+|+..+.....+....+.+..+...++
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 145 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKS--FESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYF 145 (172)
T ss_pred HHhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEE
Confidence 34678899999999975322 2223333332 22222235899999999999743222233344555555555699
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++||++|.|+++++++|.+.+.+
T Consensus 146 ~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 146 ETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987643
No 95
>PRK04213 GTP-binding protein; Provisional
Probab=99.82 E-value=6.3e-19 Score=160.02 Aligned_cols=163 Identities=17% Similarity=0.289 Sum_probs=103.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh---hhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~---~~~~~~~~ 214 (424)
...+|+++|.+|||||||+|+|.+..+. ++..+++|+..... ... .+.+|||||+..... ... ........
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSG-VPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEE--eec--ceEEEeCCccccccc-cCHHHHHHHHHHHH
Confidence 4578999999999999999999987753 66777877765432 222 689999999743211 110 11111122
Q ss_pred HHHh-hcccccEEEEEEeCCCCCCC-----------chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH
Q 014461 215 SAWS-AVNLFEVLMVVFDVHRHLTS-----------PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ 282 (424)
Q Consensus 215 ~~~~-~~~~aD~vl~VvD~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 282 (424)
..+. .+..+|++++|+|++..... .+..+...+.. .+.|+++|+||+|+..... +..++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~p~iiv~NK~Dl~~~~~---~~~~~ 152 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE------LGIPPIVAVNKMDKIKNRD---EVLDE 152 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH------cCCCeEEEEECccccCcHH---HHHHH
Confidence 2222 34567899999998642110 11222333332 1478999999999976431 12222
Q ss_pred HhcCCCC--------CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 283 FKHLPGY--------ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 283 ~~~~~~~--------~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+....+. .+++++||++| |+++++++|.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 153 IAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 2222222 14899999999 999999999988754
No 96
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=3.7e-19 Score=156.93 Aligned_cols=160 Identities=16% Similarity=0.090 Sum_probs=103.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...+|+++|.+|||||||++++++..+... ..+..+.......+ ......+.+|||||...+. ...
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~-- 71 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQ-LFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFR---------SLR-- 71 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcC-cCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHH---------HhH--
Confidence 458999999999999999999998766421 11221222111122 2333467899999975321 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
...++.+|++++|+|.++..+ ...+..|+.++.. ....+.|+++|+||+|+... ....+..+.+....+...
T Consensus 72 -~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~ 147 (170)
T cd04116 72 -TPFYRGSDCCLLTFAVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER-QVSTEEAQAWCRENGDYP 147 (170)
T ss_pred -HHHhcCCCEEEEEEECCCHHH--HHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc-ccCHHHHHHHHHHCCCCe
Confidence 124577899999999975322 2223334333211 12245899999999999642 223334455555555556
Q ss_pred EEEEecCCCcChHHHHHHHHHh
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
++++||++|.|++++++.+.+.
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999999865
No 97
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.82 E-value=2.7e-19 Score=159.79 Aligned_cols=159 Identities=14% Similarity=0.178 Sum_probs=108.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||++++.+..+. .....|........+..+ ...+.+|||+|...+.. +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~--~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~----------~~- 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN----------VR- 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCC--CccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHh----------hh-
Confidence 4578999999999999999999987764 222223222222222233 34688999999754311 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHH
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQ 282 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~ 282 (424)
...+..+|++++|+|.++..+ ...+ ..|+..+.... ++.|+++|+||+|+... +....+..+.
T Consensus 71 -~~~~~~ad~~ilvyDit~~~S--f~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 146 (182)
T cd04172 71 -PLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN 146 (182)
T ss_pred -hhhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH
Confidence 134678999999999976432 2333 35555544322 45899999999998642 1233455677
Q ss_pred HhcCCCCCeEEEEecCCCcC-hHHHHHHHHHh
Q 014461 283 FKHLPGYERIFMTSGLKGAG-LKALTQYLMEQ 313 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~ 313 (424)
+++..+...+++|||++|.| |+++|+.+.+.
T Consensus 147 ~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 147 MAKQIGAATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHcCCCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 77777765699999999998 99999998874
No 98
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.1e-18 Score=161.80 Aligned_cols=207 Identities=21% Similarity=0.319 Sum_probs=145.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
....|+++|.|+||||||+|+|++.+.. +.+++.||..+..+++.+.+.++.++|+||+...... ...+-+..+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~se-va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~-----g~grG~~vl 135 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSE-VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASS-----GRGRGRQVL 135 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCcc-ccccCceecccccceEeecCceEEEEcCcccccCccc-----CCCCcceee
Confidence 3468999999999999999999997754 7999999999999999999999999999999865321 111224456
Q ss_pred hhcccccEEEEEEeCCCCCCC-------------------------------------------chHHHHHHHHHhccCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA 254 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~-------------------------------------------~~~~~~~~l~~~~~~~ 254 (424)
..++.||++++|+|+...... ....+...|.+++..+
T Consensus 136 sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~n 215 (365)
T COG1163 136 SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHN 215 (365)
T ss_pred eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCccc
Confidence 678899999999999742210 1123333444433221
Q ss_pred C---------------------CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 255 P---------------------PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 255 ~---------------------~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
. ..+|.++|+||+|+... +.+.. +.+.+ +++++||++|.|+++|.+.|.+.
T Consensus 216 A~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-e~~~~----l~~~~---~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 216 ADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-EELER----LARKP---NSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred ceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-HHHHH----HHhcc---ceEEEecccCCCHHHHHHHHHHh
Confidence 1 14799999999999873 33332 22222 58999999999999999888765
Q ss_pred ccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCc
Q 014461 314 AVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGS 393 (424)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~ 393 (424)
+. .+||+.+-.-+....-.++|-+.|+
T Consensus 288 L~-----------------------------------------------------liRVYtK~~g~~pd~~~PlIlr~Gs 314 (365)
T COG1163 288 LG-----------------------------------------------------LIRVYTKPPGEEPDFDEPLILRRGS 314 (365)
T ss_pred hC-----------------------------------------------------eEEEEecCCCCCCCCCCCeEEeCCC
Confidence 51 1112211111111222445556689
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 014461 394 KIGRIGVEANEELRSIFK 411 (424)
Q Consensus 394 ~i~~i~~~~~~~l~~~~~ 411 (424)
+++.+....|++|.+-|+
T Consensus 315 TV~Dvc~~IH~~l~~~Fr 332 (365)
T COG1163 315 TVGDVCRKIHRDLVENFR 332 (365)
T ss_pred cHHHHHHHHHHHHHHhcc
Confidence 999999999999999998
No 99
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.9e-19 Score=175.01 Aligned_cols=177 Identities=24% Similarity=0.312 Sum_probs=136.8
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....++.|+++|.||||||||+|+|......+|++.+|||++.....++..|.++.|.||.|+.+.... ......++
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~---~iE~~gI~ 340 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESND---GIEALGIE 340 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCC---hhHHHhHH
Confidence 345679999999999999999999999999999999999999999999999999999999999873221 12245688
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC------CCCcEEEEEecCCCCCChhhHHH----HHHHHh
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP------PKQKRVLCMNKVDLVTKKKDLLK----VAEQFK 284 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~------~~~p~ilV~NK~Dl~~~~~~~~~----~~~~~~ 284 (424)
++...+..+|++++|+|+....+..+..+.+.+...+.... ...|++++.||+|+...-..... ..+. .
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~-~ 419 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA-E 419 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc-c
Confidence 88899999999999999966666667676777776554322 23789999999999865111111 1111 1
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
....+.....+|+++++|++.|.+.|.+.+.
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 1123344566999999999999999988764
No 100
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.82 E-value=4.5e-19 Score=154.50 Aligned_cols=159 Identities=19% Similarity=0.212 Sum_probs=101.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.||+++|.+|+|||||+|++++..+.. ...+.++.......+... ...+.+|||||...+. ... .
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~---~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH---------ALG---P 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHH---------Hhh---H
Confidence 479999999999999999999877643 111222222222222222 3468899999964321 111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++.. ....+..|+.++......+.|+++|+||+|+........+....+....+.. ++++||
T Consensus 68 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~ 144 (162)
T cd04123 68 IYYRDADGAILVYDITDAD--SFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAK-HFETSA 144 (162)
T ss_pred HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCE-EEEEeC
Confidence 2346789999999997532 2233344444443333335899999999999754322223333344444444 899999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
++|.|+++++++|.+.+
T Consensus 145 ~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 145 KTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998764
No 101
>PLN03110 Rab GTPase; Provisional
Probab=99.81 E-value=5e-19 Score=162.60 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=109.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+++|.+..+.. ...+....+.....+..++ ..+.+|||||...+. ...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~---------~~~-- 78 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---------AIT-- 78 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---------HHH--
Confidence 45799999999999999999999877642 1222222222222233333 478899999975321 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...++.+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus 79 -~~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~-~~~e~ 154 (216)
T PLN03110 79 -SAYYRGAVGALLVYDITKRQ--TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL-SFLET 154 (216)
T ss_pred -HHHhCCCCEEEEEEECCChH--HHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC-EEEEE
Confidence 23457889999999997532 233445566555443334689999999999865433333444555555555 49999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 155 SA~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 155 SALEATNVEKAFQTILLEIY 174 (216)
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988774
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=5.5e-19 Score=156.54 Aligned_cols=157 Identities=18% Similarity=0.225 Sum_probs=100.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
....+|+++|++|||||||+++|.+..+....+..+. ....+..++..+.+|||||..... .. .
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~---------~~---~ 75 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLR---------PY---W 75 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCEEEEEEECCCCHHHH---------HH---H
Confidence 3568999999999999999999998755432222221 112233457789999999975321 11 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 292 (424)
...+..+|++++|+|+++..+ ......++..+.. ....+.|+++|+||+|+.... ...+..+.+... ....++
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 152 (173)
T cd04154 76 RNYFESTDALIWVVDSSDRLR--LDDCKRELKELLQEERLAGATLLILANKQDLPGAL-SEEEIREALELDKISSHHWRI 152 (173)
T ss_pred HHHhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC-CHHHHHHHhCccccCCCceEE
Confidence 234678899999999975321 2223333333321 122358999999999997532 222222222111 122369
Q ss_pred EEEecCCCcChHHHHHHHHH
Q 014461 293 FMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~ 312 (424)
+++||++|.|+++++++|.+
T Consensus 153 ~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 153 QPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EeccCCCCcCHHHHHHHHhc
Confidence 99999999999999999864
No 103
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.81 E-value=4.6e-19 Score=155.15 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=100.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++|+++|.+|||||||++++.+..+...... .+.+.......+......+.+|||||...+.. .. ..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~---~~ 68 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT---------MH---AS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh---------hh---HH
Confidence 4799999999999999999998765422111 11111111111222344688999999764321 11 13
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|++++.+ ...+..|+..+... .++.|+++|+||+|+... .. .....+....+. +++++||+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~--~~-~~~~~~~~~~~~-~~~~~Sa~ 141 (161)
T cd04124 69 YYHKAHACILVFDVTRKIT--YKNLSKWYEELREY-RPEIPCIVVANKIDLDPS--VT-QKKFNFAEKHNL-PLYYVSAA 141 (161)
T ss_pred HhCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHh-CCCCcEEEEEECccCchh--HH-HHHHHHHHHcCC-eEEEEeCC
Confidence 4678899999999976432 22334455544322 235899999999998542 11 222233333344 58999999
Q ss_pred CCcChHHHHHHHHHhcc
Q 014461 299 KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~ 315 (424)
+|.|++++++.+.+.+.
T Consensus 142 ~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 142 DGTNVVKLFQDAIKLAV 158 (161)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999987664
No 104
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.81 E-value=4e-19 Score=160.17 Aligned_cols=161 Identities=12% Similarity=0.135 Sum_probs=106.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+.++..+.+.. ....|........+..+ ...+.+|||+|...+.. +.
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~----------l~- 68 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPK--EYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDR----------LR- 68 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCc--CCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh-
Confidence 35799999999999999999999876632 22222222222112233 34588999999865421 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHHH
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAEQ 282 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~~ 282 (424)
...+..+|++++|+|+++..+ ...+. .|+..+... .++.|+++|+||+|+.+.... ..+..+.
T Consensus 69 -~~~~~~a~~~ilvydit~~~S--f~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~ 144 (191)
T cd01875 69 -TLSYPQTNVFIICFSIASPSS--YENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGA 144 (191)
T ss_pred -hhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHH
Confidence 124678999999999976432 22332 344443322 236899999999999654211 1223445
Q ss_pred HhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+....+...++++||++|.||+++|++|.+.+.
T Consensus 145 ~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 145 LAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 555555446999999999999999999998774
No 105
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.81 E-value=2.7e-19 Score=158.41 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=102.4
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
|+++|.+|||||||++++.+..+.. ....+...........++ ..+.+|||||...+.. +. ...
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~--~~~ 66 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR----------LR--PLS 66 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch----------hc--hhh
Confidence 5799999999999999999877642 222222222222233333 3588999999764421 11 123
Q ss_pred cccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHhcC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFKHL 286 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~~~ 286 (424)
+..+|++++|+|+++..+ ...+ ..|+..+... .++.|+++|+||+|+..... ...+....+...
T Consensus 67 ~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 143 (174)
T smart00174 67 YPDTDVFLICFSVDSPAS--FENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR 143 (174)
T ss_pred cCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH
Confidence 567899999999975322 2222 2344444332 23689999999999975322 112233445555
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+...+++|||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 6665699999999999999999998775
No 106
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=3.6e-19 Score=157.24 Aligned_cols=161 Identities=13% Similarity=0.101 Sum_probs=107.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
+.++|+++|.+|||||||++++++..+. +....+|+... ....+..++ ..+.+|||+|.......
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------- 70 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL----------- 70 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc-----------
Confidence 5689999999999999999999988764 12333333221 112222333 46789999997643210
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
....+..+|++++|+|++++ .....+..++..+.. ..+.|+++|+||+|+.+.........+.+.+..+...+++
T Consensus 71 -~~~~~~~~d~~llv~d~~~~--~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (169)
T cd01892 71 -NDAELAACDVACLVYDSSDP--KSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLH 145 (169)
T ss_pred -chhhhhcCCEEEEEEeCCCH--HHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEE
Confidence 11235788999999999753 222344455655422 1258999999999996543222222344555556555799
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|++++++.|.+.+.
T Consensus 146 ~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 146 FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred EEeccCccHHHHHHHHHHHhh
Confidence 999999999999999998764
No 107
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=3.4e-19 Score=158.69 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=106.2
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++.+..+. .....|........+..+ ...+.+|||+|...+.. +. .
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~----------~~--~ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP--ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDN----------VR--P 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC--CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhh----------cc--h
Confidence 58999999999999999999987664 222233222222222233 34578999999754321 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHH-HHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSR-VIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~-~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~~ 284 (424)
..+..+|++++|+|.++..+. .. ...|+..+.... ++.|+++|+||+|+... .....+..+.++
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf--~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a 144 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETL--DSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIA 144 (178)
T ss_pred hhcCCCCEEEEEEECCChhhH--HHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHH
Confidence 246789999999999764332 22 235555444332 35899999999998641 123344566777
Q ss_pred cCCCCCeEEEEecCCCcC-hHHHHHHHHHh
Q 014461 285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQ 313 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~ 313 (424)
+..+...+++|||++|+| |+++|+.+.+.
T Consensus 145 ~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 145 KQLGAEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHhCCCEEEECccCcCCcCHHHHHHHHHHH
Confidence 777765699999999995 99999998874
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=6.9e-19 Score=154.90 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=104.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...+|+++|.+|||||||++++.+..+.. ...+..+.+.....+...+ ..+.+|||||...+. . .
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~---~ 72 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR---------S---I 72 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---------H---H
Confidence 35889999999999999999998765431 1222222222222333444 457899999975321 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.......+.+..... ..++++
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~ 149 (169)
T cd04114 73 TQSYYRSANALILTYDITCEE--SFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLET 149 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEe
Confidence 123467789999999996532 22233445444332223357899999999997543333334445554444 358999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|.|+++++++|.+.+
T Consensus 150 Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 150 SAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998754
No 109
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.81 E-value=5.2e-19 Score=158.44 Aligned_cols=158 Identities=14% Similarity=0.125 Sum_probs=102.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.+|||||||+|++.+..+.... +|.......+..++.++.+|||||..... ...
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~--- 78 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQAR---------RLW--- 78 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHHH---------HHH---
Confidence 45689999999999999999999987654322 22222333445567889999999975321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---------
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--------- 286 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--------- 286 (424)
...+..+|++++|+|+++.. .......++.++.. ....+.|+++|+||+|+... ....+..+.+.-.
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~--~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~l~l~~~~~~~~~~ 155 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKE--RFAESKRELDALLSDEELATVPFLILGNKIDAPYA-ASEDELRYALGLTNTTGSKGKV 155 (184)
T ss_pred HHHhCCCCEEEEEEECCcHH--HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-CCHHHHHHHcCCCccccccccc
Confidence 23467899999999997531 11222233333221 11235799999999998643 1122222222110
Q ss_pred -CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 287 -PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 287 -~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.....+++|||++|.|++++++||.+.
T Consensus 156 ~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 156 GVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123359999999999999999999865
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.81 E-value=5.6e-19 Score=154.37 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=96.7
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.||+++|.+|||||||++++....+.. ..| |+... ...+......+.+|||||...+. . .....
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~--~~p-t~g~~-~~~~~~~~~~~~l~D~~G~~~~~---------~---~~~~~ 64 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP-TIGFN-VETVEYKNISFTVWDVGGQDKIR---------P---LWRHY 64 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--cCC-CCCcc-eEEEEECCEEEEEEECCCCHhHH---------H---HHHHH
Confidence 379999999999999999997655532 122 22111 12244567789999999975321 1 11234
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--CC-CCCeEEEE
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--LP-GYERIFMT 295 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~~-~~~~~~~i 295 (424)
+..+|++++|+|+++.. ......+++..+. .....+.|+++++||+|+.+.. ...+....+.. .. ....++++
T Consensus 65 ~~~ad~~i~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 141 (159)
T cd04150 65 FQNTQGLIFVVDSNDRE--RIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM-SAAEVTDKLGLHSLRNRNWYIQAT 141 (159)
T ss_pred hcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC-CHHHHHHHhCccccCCCCEEEEEe
Confidence 68899999999997532 1222333333332 1112247999999999996531 12222333321 01 11247899
Q ss_pred ecCCCcChHHHHHHHHH
Q 014461 296 SGLKGAGLKALTQYLME 312 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~ 312 (424)
||++|.|+++++++|.+
T Consensus 142 Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 142 CATSGDGLYEGLDWLSN 158 (159)
T ss_pred eCCCCCCHHHHHHHHhc
Confidence 99999999999999864
No 111
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=4.5e-19 Score=157.38 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+.+++.+.+. .....+........+..++ ..+.+|||||...+.. +. .
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~--~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR----------LR--P 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhh----------hh--h
Confidence 58999999999999999999987653 2222222222111222333 5688999999754321 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (424)
..+..+|++|+|+|+++..+ ...+. .|+..+... .++.|+++|+||+|+...+. ...+....+.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~s--f~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 144 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPAS--FENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 24678999999999976422 22222 344433322 23589999999999965321 1123334455
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
...+...+++|||++|.|++++|+.+.+.
T Consensus 145 ~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 145 KEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred HHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 55554469999999999999999998764
No 112
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.81 E-value=9.6e-19 Score=153.65 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=102.0
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.|+++|.+|+|||||+|+|.+..+.. ...+++|.......+.. .+..+.+|||||...+. ... .
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~---------~~~---~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT---------NMR---A 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---------HHH---H
Confidence 58999999999999999999877653 23334554443333333 36789999999974321 111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhc-----CCCCCe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKH-----LPGYER 291 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~-----~~~~~~ 291 (424)
..+..+|++++|+|++++..........++... +.|+++|+||+|+.... .........+.. .....+
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~------~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA------NVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQ 142 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCc
Confidence 234678999999999865433333333444432 47899999999987532 122222222221 111235
Q ss_pred EEEEecCCCcChHHHHHHHHHhc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
++++||++|.|+++++++|.+..
T Consensus 143 ~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 143 IVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred EEEeecccCCCHHHHHHHHHHhh
Confidence 99999999999999999998765
No 113
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.81 E-value=4.5e-19 Score=156.80 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=104.2
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+|+++|.+|||||||+++++++.+. .....|.. ......+... ...+.+|||||...+. . ...
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFD--KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK---------C---IAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH---------h---hHH
Confidence 6999999999999999999987664 22222221 2221222223 3468999999975431 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (424)
..++.+|++++|+|+++. .....+..|+..+... .....|+++|+||+|+..... ...+....+....+. ++++
T Consensus 68 ~~~~~ad~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~e 144 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDV--ASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA-EYWS 144 (170)
T ss_pred HHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC-eEEE
Confidence 346789999999999652 2233445666654322 222367899999999865322 123333444444444 4899
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|++++++.|.+.+.+
T Consensus 145 ~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 145 VSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987754
No 114
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=4.4e-19 Score=159.60 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=103.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++.+..+... ...|...........+ ...+.+|||||...+.. +..
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~----------l~~-- 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQV--YEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR----------LRS-- 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCcceeeeEEEEEECCEEEEEEEEECCCChhccc----------ccc--
Confidence 3799999999999999999998776432 1122111111122223 35689999999864321 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~~~ 284 (424)
..+..+|++++|+|+++..+. ..+. .|+..+... .++.|+++|+||+|+....... .+....+.
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf--~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSL--ENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA 143 (189)
T ss_pred ccccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH
Confidence 235678999999999764322 2221 344444332 2358999999999997643211 11223344
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
...+...+++|||++|.|++++|++|.+.+..
T Consensus 144 ~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 144 KRINALRYLECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHcCCCEEEEccCCcCCCHHHHHHHHHHHHhc
Confidence 34444459999999999999999999988753
No 115
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.81 E-value=7.4e-19 Score=157.23 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=104.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeec---------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVS---------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS 205 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~---------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~ 205 (424)
+|+++|.+|+|||||+|+|++....... ...++|.......+...+..+.+|||||+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 4899999999999999999876544221 12234444444445556778999999997532
Q ss_pred hhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHH
Q 014461 206 HKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQF 283 (424)
Q Consensus 206 ~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~ 283 (424)
.......+..+|++++|+|++.+...........+.. .+.|+++|+||+|+.... ..........
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~ 142 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE------GGLPIIVAINKIDRVGEEDLEEVLREIKEL 142 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH------CCCCeEEEEECCCCcchhcHHHHHHHHHHH
Confidence 1112234567899999999976554433333333333 247899999999998631 1112222222
Q ss_pred hcCC-------------CCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 284 KHLP-------------GYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 284 ~~~~-------------~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.... ...+++++||++|.|+++++++|.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 143 LGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred HccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2221 2346999999999999999999999875
No 116
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=6.1e-19 Score=162.77 Aligned_cols=162 Identities=13% Similarity=0.155 Sum_probs=109.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||++++.+..+. .....|........+.. ....+.+|||+|...+. . +.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~--~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~------~----~~- 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD------N----VR- 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCC--CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhH------H----HH-
Confidence 3579999999999999999999987664 22222222222111222 33568899999975431 0 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHHHH
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAEQF 283 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~~~ 283 (424)
...+..+|++++|+|+++..+... .+..|+.++.... ++.|+++|+||+|+... .....+..+.+
T Consensus 79 -~~~~~~ad~vIlVyDit~~~Sf~~-~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 79 -PLCYSDSDAVLLCFDISRPETVDS-ALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred -HHHcCCCcEEEEEEECCChHHHHH-HHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 134678999999999976433221 1234555544322 35799999999998641 22334556777
Q ss_pred hcCCCCCeEEEEecCCCc-ChHHHHHHHHHhcc
Q 014461 284 KHLPGYERIFMTSGLKGA-GLKALTQYLMEQAV 315 (424)
Q Consensus 284 ~~~~~~~~~~~iSA~~g~-gi~~L~~~i~~~l~ 315 (424)
++..+...+++|||++|. ||+++|+.+...+.
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 777777569999999998 89999999987664
No 117
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.81 E-value=6.5e-19 Score=155.26 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=102.2
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++.+..+. .....++.......+..+ ...+.+|||||...+.. ...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~--- 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA---------MRE--- 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh---------hhH---
Confidence 57999999999999999999977653 222233322222222333 35678999999765421 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++..+ ......|...+.. ....+.|+++|+||+|+...+....+....+....+..+++++|
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s--~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~S 145 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEAS--LNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETS 145 (168)
T ss_pred HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEee
Confidence 12456799999999975321 1222233332221 12235899999999999764433333333444444544699999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|++++++++...+
T Consensus 146 A~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 146 ARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 118
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.81 E-value=2.2e-19 Score=157.66 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=99.7
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|.+|||||||+++++...+. ...+.++..........++ ..+.+|||||...... ... ..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~---~~ 67 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--------EQL---ER 67 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--cccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--------chH---HH
Confidence 4899999999999999999876553 2333333222222222333 3578999999863210 011 12
Q ss_pred hcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.++.+|++++|+|+++..+... ..+..++..... ...+.|+++|+||+|+...+....+....+....+. +++++||
T Consensus 68 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa 145 (165)
T cd04146 68 SIRWADGFVLVYSITDRSSFDEISQLKQLIREIKK-RDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC-LFFEVSA 145 (165)
T ss_pred HHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC-EEEEeCC
Confidence 3567899999999976422211 123333443321 123589999999999865322222334444444454 5999999
Q ss_pred CCC-cChHHHHHHHHHhc
Q 014461 298 LKG-AGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g-~gi~~L~~~i~~~l 314 (424)
++| .|++++|+.|.+.+
T Consensus 146 ~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 146 AEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCchhHHHHHHHHHHHH
Confidence 999 49999999998765
No 119
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=6.9e-19 Score=157.83 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=105.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++|+++|.+|||||||++++.+..+. .....+........+... ...+.+|||||...+. . . .
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---------~-~--~ 66 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD---------R-L--R 66 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH---------H-H--H
Confidence 47999999999999999999987764 223333322222222222 3468899999975321 0 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh----hhHHHHHHHHhcCCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~ 291 (424)
...+..+|++++|+|+++..+ ...+. .|+...... .++.|+++|+||+|+.... .......+.+....+..+
T Consensus 67 ~~~~~~ad~ii~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~ 143 (187)
T cd04132 67 PLSYPDVDVLLICYAVDNPTS--LDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFA 143 (187)
T ss_pred HHhCCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcE
Confidence 124678999999999975322 22222 344443322 2358999999999986532 112334455555556646
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++++||++|.|++++++.+.+.+..
T Consensus 144 ~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 144 YLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 120
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.81 E-value=8.8e-19 Score=155.66 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=99.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|.+|||||||++++..+.+.. ..+ |+... .......+..+.+|||||...+. . ...
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~-t~~~~-~~~~~~~~~~l~l~D~~G~~~~~---------~---~~~ 75 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIP-TIGFN-VETVTYKNISFTVWDVGGQDKIR---------P---LWR 75 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCC-ccccc-eEEEEECCEEEEEEECCCChhhH---------H---HHH
Confidence 46899999999999999999997655421 122 22111 12234566789999999975421 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~ 293 (424)
..+..+|++++|+|++++. ......+++..+.. ....+.|+++|+||+|+.+.. ...+..+.+.. . .....++
T Consensus 76 ~~~~~ad~ii~v~D~t~~~--s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 152 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRD--RIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-KAAEITEKLGLHSIRDRNWYIQ 152 (175)
T ss_pred HHhCCCCEEEEEEECCCHH--HHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-CHHHHHHHhCccccCCCcEEEE
Confidence 2367899999999997532 12233344444322 112357999999999997532 11222222210 0 0112377
Q ss_pred EEecCCCcChHHHHHHHHHhc
Q 014461 294 MTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l 314 (424)
++||++|.|+++++++|.+.+
T Consensus 153 ~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 153 PTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 899999999999999998765
No 121
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=5.4e-19 Score=151.22 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=92.9
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|||||||+|+|.+.... ... |.. ..... .+|||||.... ....+......+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~-----~~~~~---~~iDt~G~~~~--------~~~~~~~~~~~~ 60 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQA-----VEYND---GAIDTPGEYVE--------NRRLYSALIVTA 60 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-cee-----EEEcC---eeecCchhhhh--------hHHHHHHHHHHh
Confidence 7999999999999999999987642 111 111 11222 68999997311 111233333457
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCC
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKG 300 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g 300 (424)
+.+|++++|+|++++.+..... ++... ..|+++|+||+|+.+.. ...+..+.+.+..+..+++++||++|
T Consensus 61 ~~ad~vilv~d~~~~~s~~~~~---~~~~~------~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 130 (142)
T TIGR02528 61 ADADVIALVQSATDPESRFPPG---FASIF------VKPVIGLVTKIDLAEAD-VDIERAKELLETAGAEPIFEISSVDE 130 (142)
T ss_pred hcCCEEEEEecCCCCCcCCChh---HHHhc------cCCeEEEEEeeccCCcc-cCHHHHHHHHHHcCCCcEEEEecCCC
Confidence 8899999999998766544332 22222 14899999999997532 22233344443445546999999999
Q ss_pred cChHHHHHHHH
Q 014461 301 AGLKALTQYLM 311 (424)
Q Consensus 301 ~gi~~L~~~i~ 311 (424)
.|+++++++|.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999999874
No 122
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.81 E-value=7.7e-19 Score=164.18 Aligned_cols=159 Identities=21% Similarity=0.217 Sum_probs=102.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++++..+.. ....|+.+.....+..++ ..+.+|||+|...+. . +..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~---------~-~~~-- 66 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP---------A-MRR-- 66 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh---------H-HHH--
Confidence 379999999999999999999877642 333333333333333444 567899999975431 1 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc---------CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK---------QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG 288 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~---------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 288 (424)
..+..+|++++|+|+++.. ....+..|+.++.. ....+.|+++|+||+|+...+....+....+.....
T Consensus 67 ~~~~~ad~iIlVfdv~~~~--Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~ 144 (247)
T cd04143 67 LSILTGDVFILVFSLDNRE--SFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDE 144 (247)
T ss_pred HHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcC
Confidence 2356789999999997532 22233333333321 122358999999999997532222222333322222
Q ss_pred CCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 289 YERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 289 ~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...++++||++|.|+++++++|...+
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 23599999999999999999999876
No 123
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.81 E-value=7.7e-19 Score=153.34 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=95.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|.+|||||||+++|.+... ....+..+.+ ...+...+..+.+|||||...+. ... ..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~---------~~~---~~ 64 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYR---------GLW---EH 64 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhhH---------HHH---HH
Confidence 489999999999999999998642 1222222222 12234567789999999975431 111 12
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHh--cCCC-CCeE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLPG-YERI 292 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~ 292 (424)
.+..+|++++|+|+++..+. .....++..+... ...+.|+++|+||+|+.... ...+..+.+. .... ...+
T Consensus 65 ~~~~~d~ii~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 65 YYKNIQGIIFVIDSSDRLRL--VVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-TAVKITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHccCCEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-CHHHHHHHhCCccccCceEEE
Confidence 35789999999999754221 2222333332211 12358999999999997532 1122222211 1111 1148
Q ss_pred EEEecCCCcChHHHHHHHHH
Q 014461 293 FMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~ 312 (424)
+++||++|.|+++++++|.+
T Consensus 142 ~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 142 FASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEeeCCCCCchHHHHHHHhc
Confidence 99999999999999999865
No 124
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=9.4e-19 Score=160.18 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=108.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-C--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-A--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
.++|+++|.+|||||||++++++..+..... +..+.+.....+.. . ...+.+|||||..... ..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~------------~~ 68 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR------------SI 68 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH------------HH
Confidence 3789999999999999999999877653322 22222222222222 2 3468899999975321 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
....+..+|++++|+|+++.. ....+.+|+.++.... ....|+++|+||+|+........+....+.+..+. .+++
T Consensus 69 ~~~~~~~~d~iilv~D~~~~~--Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e 145 (211)
T cd04111 69 TRSYYRNSVGVLLVFDITNRE--SFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM-KYIE 145 (211)
T ss_pred HHHHhcCCcEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC-EEEE
Confidence 123467789999999997532 2234455565543222 22467899999999976433334445556655564 5999
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|+++++++|.+.+..
T Consensus 146 ~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 146 TSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987643
No 125
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=7e-19 Score=153.72 Aligned_cols=158 Identities=18% Similarity=0.107 Sum_probs=100.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+++++...+. ....+++..........+ ...+.+|||||..... . ...
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~---~~~ 66 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---------A---IRD 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh---------H---HHH
Confidence 47999999999999999999977654 233333333322222333 3468899999975431 1 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++.. .......++..+... ...+.|+++|+||+|+.............+....+. +++++|
T Consensus 67 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~S 143 (164)
T cd04139 67 NYHRSGEGFLLVFSITDME--SFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGV-PYVETS 143 (164)
T ss_pred HHhhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEEee
Confidence 2456789999999986422 112222333322221 123589999999999976322222222333333344 599999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|++|.|+++++++|.+.+
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998776
No 126
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=8.2e-19 Score=151.07 Aligned_cols=164 Identities=18% Similarity=0.170 Sum_probs=119.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee--eEEEE--EEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--HEVLG--VMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~--~~~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
.+..|++++|..+|||||||++++...+.. ..+.|. +-... .+......+.+|||.|+..++...
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~---~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsli-------- 88 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------- 88 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcc---cccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhh--------
Confidence 456899999999999999999999776642 112221 11111 233344568999999998764321
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCC-CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~-~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
-.+++++.++|+|+|.++.. ......+|++.+......+ .-+++|+||.||.+.++...+..+......+. .
T Consensus 89 ----psY~Rds~vaviVyDit~~~--Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a-~ 161 (221)
T KOG0094|consen 89 ----PSYIRDSSVAVIVYDITDRN--SFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNA-E 161 (221)
T ss_pred ----hhhccCCeEEEEEEeccccc--hHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCc-E
Confidence 13578899999999998643 3455667887776555443 66788999999998876666666666666666 4
Q ss_pred EEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
++++||+.|.||.+||..|...++...
T Consensus 162 f~etsak~g~NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 162 FIETSAKAGENVKQLFRRIAAALPGME 188 (221)
T ss_pred EEEecccCCCCHHHHHHHHHHhccCcc
Confidence 999999999999999999998886543
No 127
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=3.6e-19 Score=162.62 Aligned_cols=160 Identities=18% Similarity=0.273 Sum_probs=106.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceee------------------------------cCCCCceeeEEEEEEecCCccEE
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKADTQIC 190 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~~~i~ 190 (424)
+|+++|++|+|||||+++|+....... ....++|++.....+...+.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975322211 11256777777667778888999
Q ss_pred EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
+|||||+..+ .......+..+|++++|+|++.+..........++...+ ..++|+|+||+|+.
T Consensus 81 liDTpG~~~~------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~-----~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQY------------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLG-----IRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHH------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcC-----CCcEEEEEEchhcc
Confidence 9999997432 122334567899999999998765444444444444432 13578899999997
Q ss_pred CChh-hH---HHHHHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCC
Q 014461 271 TKKK-DL---LKVAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPL 324 (424)
Q Consensus 271 ~~~~-~~---~~~~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~ 324 (424)
.... .. ....+.+....++ .+++++||++|.|+++.. ...+|++++.
T Consensus 144 ~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~-------~~~~w~~g~~ 196 (208)
T cd04166 144 DYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS-------ENMPWYSGPT 196 (208)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC-------CCCCCCCCCc
Confidence 5322 12 2223333333343 358999999999998542 3567877654
No 128
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=9.5e-19 Score=158.61 Aligned_cols=165 Identities=15% Similarity=0.077 Sum_probs=103.7
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|.+|||||||++++++..+. .....++.......+...+ ..+.+|||||...+. . +. ..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~-~~--~~ 66 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP---------A-MR--KL 66 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh---------H-HH--HH
Confidence 5899999999999999999987764 2233333222222333444 468899999975431 1 11 12
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCC-hhhHH-HHHHHHhcCCCCCeEEEE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTK-KKDLL-KVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~i 295 (424)
.+..+|++++|+|+++..+ ...+..++..+.... ..+.|+++|+||+|+... ..... ...+......+ ..++++
T Consensus 67 ~~~~ad~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~~ 143 (198)
T cd04147 67 SIQNSDAFALVYAVDDPES--FEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVET 143 (198)
T ss_pred HhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC-CcEEEe
Confidence 4577899999999975322 222333333322211 135899999999999653 21111 11111211222 348999
Q ss_pred ecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
||++|.|+++++++|.+.+...++.+|
T Consensus 144 Sa~~g~gv~~l~~~l~~~~~~~~~~~~ 170 (198)
T cd04147 144 SAKDNENVLEVFKELLRQANLPYNLSP 170 (198)
T ss_pred cCCCCCCHHHHHHHHHHHhhcccccch
Confidence 999999999999999998876555443
No 129
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=9.4e-19 Score=153.97 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=99.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
||+++|.+|||||||+|++.++.+... .+.+.... ....+.....++.+|||||..... ......
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN--VPRVLPEITIPADVTPERVPTTIVDTSSRPQDR------------ANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--CCCcccceEeeeeecCCeEEEEEEeCCCchhhh------------HHHhhh
Confidence 799999999999999999998776422 22222111 111233355678999999975431 111233
Q ss_pred cccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChhh--HHHHHHHHhcC-CCCCeEEEE
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--LLKVAEQFKHL-PGYERIFMT 295 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~-~~~~~~~~i 295 (424)
+..+|++++|+|++++.+. ..+ ..|+..+.... ++.|+++|+||+|+.+.... .......+... .....++++
T Consensus 68 ~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T cd01893 68 IRKANVICLVYSVDRPSTL--ERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC 144 (166)
T ss_pred cccCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence 5779999999999753322 221 12333332211 25899999999999764321 12222222211 122369999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|.|++++++.+.+.+
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999999998765
No 130
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.80 E-value=1.3e-18 Score=154.37 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=99.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|.+|+|||||++++.+..+....+..+. ....+..++..+.+|||||..... ... .
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~l~D~~G~~~~~---------~~~---~ 77 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGS----NVEEIVYKNIRFLMWDIGGQESLR---------SSW---N 77 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcccc----ceEEEEECCeEEEEEECCCCHHHH---------HHH---H
Confidence 357899999999999999999987766432222222 223344567889999999975321 111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCeE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYERI 292 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~ 292 (424)
..+..+|++++|+|+++..+ ......++.+.. .....+.|+++++||+|+... ....+..+.+.. .... ++
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~--~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~-~~~~~i~~~l~~~~~~~~~~-~~ 153 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRER--LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA-MTPAEISESLGLTSIRDHTW-HI 153 (174)
T ss_pred HHhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC-CCHHHHHHHhCcccccCCce-EE
Confidence 23578999999999975321 122223333321 111235799999999998653 122222333321 1122 58
Q ss_pred EEEecCCCcChHHHHHHHHH
Q 014461 293 FMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~ 312 (424)
++|||++|.|+++++++|.+
T Consensus 154 ~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 154 QGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred EecccCCCCCHHHHHHHHhc
Confidence 99999999999999999864
No 131
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.80 E-value=1e-18 Score=154.64 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=102.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|++|+|||||++++.+..+. ....++........+..++ ..+.+|||||...+.... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------~ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR------------P 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccc------------c
Confidence 47999999999999999999987764 2233333322222233333 346799999986542110 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (424)
..+..+|++++|+|.++..+. ..+ ..|+..+... .++.|+++|+||+|+.+... ...+....+.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~--~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 143 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASF--QNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLA 143 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHH
Confidence 235678999999999754222 112 1233333222 34689999999999865321 1122334455
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...+...+++|||++|.|++++++.+.+.+
T Consensus 144 ~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 144 KEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred HHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 555665699999999999999999998754
No 132
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.80 E-value=1.7e-18 Score=155.63 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=102.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|++|||||||++++.+..+....+ |.......+..++..+.+|||||.... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~----T~~~~~~~i~~~~~~~~l~D~~G~~~~------------~~~~ 80 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQA------------RRLW 80 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC----ccCcceEEEEECCEEEEEEECCCCHHH------------HHHH
Confidence 357899999999999999999999876532211 222223345566788999999996432 1112
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC--------
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-------- 287 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-------- 287 (424)
...+..+|++++|+|+++..+ ......++..+.. ....+.|+++|+||+|+... ....+ .+.+....
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s--~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~ 156 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPER--FQESKEELDSLLSDEELANVPFLILGNKIDLPGA-VSEEE-LRQALGLYGTTTGKGV 156 (190)
T ss_pred HHHhccCCEEEEEEECCcHHH--HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-cCHHH-HHHHhCcccccccccc
Confidence 234578899999999975311 1122233333322 22235899999999998652 12222 22222211
Q ss_pred -------CCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 288 -------GYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 288 -------~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
....+++|||++|+|+++++++|.+.+
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 157 SLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cccccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 112589999999999999999998753
No 133
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.80 E-value=1.4e-18 Score=156.60 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=102.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.||+++|.+|||||||++++++..+.. .....|..... ...+..++ ..+.+|||||...+.. ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~-- 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEA----------MS-- 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhh----------hh--
Confidence 379999999999999999999877642 22333332221 12233334 3467999999754311 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----hhHHHHHHHHhcCCCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----KDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|+++. .....+..|+..+... .++.|+++|+||+|+.... .........+....+. ++
T Consensus 68 ~~~~~~~d~iilv~d~~~~--~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~-~~ 143 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDS--SSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKA-QH 143 (193)
T ss_pred HhhcCCCCEEEEEEECCCH--HHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCC-eE
Confidence 1235678999999999753 2222334455554332 2358999999999986431 1111223444444444 48
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 144 ~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 144 FETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987743
No 134
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.80 E-value=1.1e-18 Score=160.87 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=102.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcce-eecCCCCc-eeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNT-TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~-~~~~~~~t-t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||++++.++.+. ........ ........+......+.+|||||.... ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~------------~~~-- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW------------TED-- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH------------HHh--
Confidence 47999999999999999999876653 11111111 111111122334567899999997511 111
Q ss_pred hhcc-cccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 218 SAVN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 218 ~~~~-~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+. .+|++++|+|+++..+ ...+.+++..+.... ..+.|+++|+||+|+........+....+....+. .++++
T Consensus 67 ~~~~~~ad~iilV~d~td~~S--~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~-~~~e~ 143 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSS--FERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDC-KFIET 143 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCC-eEEEe
Confidence 1123 7899999999976422 223334444332211 23589999999999976533333333445544454 49999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 144 SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 144 SAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 135
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.80 E-value=8.4e-19 Score=154.51 Aligned_cols=157 Identities=15% Similarity=0.218 Sum_probs=101.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+++|++..+. .....+.......... .....+.+|||||...+.. ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~----------~~~-- 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR----------LRP-- 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc----------cch--
Confidence 47999999999999999999987763 1122222222222222 2344689999999875421 000
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh-----------HHHHHHHHhcC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-----------LLKVAEQFKHL 286 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~-----------~~~~~~~~~~~ 286 (424)
..+..+|++++|+|+++..+. ......|+..+.... ++.|+++|+||+|+...... .......+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSF-ENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE 144 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH
Confidence 124678999999999753221 122223343333222 25899999999999765322 12233445445
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHH
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
.+...++++||++|.|+++++++|.+
T Consensus 145 ~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 55546999999999999999999875
No 136
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=1.2e-18 Score=151.47 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=102.5
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|++|||||||++++++..+ ......++.+.....+... ...+.+||+||..... ... ..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~---~~ 66 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS---------AMR---DL 66 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH---------HHH---HH
Confidence 589999999999999999998764 3444444444444444444 3568899999975421 111 12
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.+..+|++++|+|.++.. ....+..+...+..... ...|+++|+||+|+........+....+....+ .+++++||
T Consensus 67 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~ 143 (160)
T cd00876 67 YIRQGDGFILVYSITDRE--SFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSA 143 (160)
T ss_pred HHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEecc
Confidence 356789999999997532 22223333333222111 358999999999998643333333444444334 35999999
Q ss_pred CCCcChHHHHHHHHHh
Q 014461 298 LKGAGLKALTQYLMEQ 313 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~ 313 (424)
++|.|+++++++|.+.
T Consensus 144 ~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 144 KDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999875
No 137
>PLN03108 Rab family protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=158.89 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=106.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|++|+|||||+++|++..+.... .+....+.....+...+ ..+.+|||||..... ...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~-~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~------------~~~ 72 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR------------SIT 72 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH------------HHH
Confidence 479999999999999999999987664322 12111111122233333 457899999975321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++.. ....+..|+..+.....+..|+++|+||+|+...+....+..+.+....+. +++++|
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~--s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~S 149 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRE--TFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGL-IFMEAS 149 (210)
T ss_pred HHHhccCCEEEEEEECCcHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCC-EEEEEe
Confidence 23456789999999997532 223344455444333334589999999999976433333444555555555 499999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|++++|+++.+.+.
T Consensus 150 a~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 150 AKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 138
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.79 E-value=2.2e-18 Score=154.17 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=98.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE---ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM---TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~---~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..+|+++|.+|||||||++++.+..+.. ..+..........+ ...+..+.+|||||...+. ...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~~~-- 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR---------PLW-- 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhHH---------HHH--
Confidence 5789999999999999999998876542 22221111111112 2245679999999974321 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc---CCC--C
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH---LPG--Y 289 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~---~~~--~ 289 (424)
...+..+|++++|+|+++.. .......++.++... ...+.|+++|+||+|+.... .... ...+.. ... .
T Consensus 70 -~~~~~~~d~ii~v~D~~~~~--~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~-~~~~-~~~~~~~~~~~~~~~ 144 (183)
T cd04152 70 -KSYTRCTDGIVFVVDSVDVE--RMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL-SVSE-VEKLLALHELSASTP 144 (183)
T ss_pred -HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC-CHHH-HHHHhCccccCCCCc
Confidence 12367799999999997531 112223333332211 12258999999999986421 1111 222221 111 1
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..++++||++|.|+++++++|.+.+.
T Consensus 145 ~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 145 WHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred eEEEEeecccCCCHHHHHHHHHHHHH
Confidence 24789999999999999999988773
No 139
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.79 E-value=2.2e-18 Score=152.21 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=104.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+|+++|++|||||||++++++..+.... .+..........+..+ ...+.+|||||...+. ..+ .
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~~~--~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERT-EATIGVDFRERTVEIDGERIKVQLWDTAGQERFR---------KSM--V 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcc-ccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH---------Hhh--H
Confidence 478999999999999999999886653211 1111111111223333 3578999999975321 001 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...++.+|++++|+|++++. ....+..|+..+... ...+.|+++|+||+|+...........+.+...... +++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~e~ 146 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMA--SFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSM-PLFET 146 (170)
T ss_pred HHhhcCCCEEEEEEECCCHH--HHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCC-cEEEE
Confidence 12357789999999997532 223344555444322 123589999999999976443333444555555444 49999
Q ss_pred ecCC---CcChHHHHHHHHHhc
Q 014461 296 SGLK---GAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~---g~gi~~L~~~i~~~l 314 (424)
||++ +.|++++|..+.+.+
T Consensus 147 Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 147 SAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred eccCCcCCCCHHHHHHHHHHHh
Confidence 9999 899999999998765
No 140
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-18 Score=151.76 Aligned_cols=162 Identities=16% Similarity=0.171 Sum_probs=121.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--EEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~--~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
...++|+++|.+|||||+++-++....+. .....|... .......+ ...+.+|||.|+..+.
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~d~~f~---~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~----------- 75 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFSDDSFN---TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR----------- 75 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhhhccCc---CCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH-----------
Confidence 45689999999999999999999877653 222222211 11112233 3457899999987542
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+..+++.|+.+++|+|.++.. ....+..|++.+......+.|.++|+||+|+...++...+..+.++..++.. +
T Consensus 76 -ti~~sYyrgA~gi~LvyDitne~--Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~-F 151 (207)
T KOG0078|consen 76 -TITTAYYRGAMGILLVYDITNEK--SFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIK-F 151 (207)
T ss_pred -HHHHHHHhhcCeeEEEEEccchH--HHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCe-E
Confidence 22334578899999999998643 3345556777766666667999999999999987777778888888888886 9
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.||++.|-.|...+..
T Consensus 152 ~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 152 FETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred EEccccCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999887753
No 141
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.79 E-value=1.5e-18 Score=151.44 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=99.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|||||||+.+++...+... .+. +.......+..++ ..+.+|||+|....
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~--~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~----------------- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL--ESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA----------------- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC--CCC-CccceEEEEEECCEEEEEEEEECCCCCch-----------------
Confidence 3799999999999999999887665422 111 1111112233444 45889999998421
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....+|++++|+|.++..+. ..+..|+.++.... .++.|+++|+||+|+.. .+....+..+.+.+..+...+++
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf--~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e 138 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASF--QTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYE 138 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEE
Confidence 123567999999999864332 33344555543322 24579999999999853 22233334445554433335999
Q ss_pred EecCCCcChHHHHHHHHHh
Q 014461 295 TSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~ 313 (424)
|||++|.||+++|+.+.+.
T Consensus 139 ~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 139 TCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EecCCCCCHHHHHHHHHhh
Confidence 9999999999999998764
No 142
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.79 E-value=2.9e-18 Score=153.16 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=101.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.+|||||||++++....+... .|..... ...+...+..+.+|||||..... .. .
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~--~pt~g~~--~~~~~~~~~~~~i~D~~Gq~~~~---------~~---~ 78 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT--IPTIGFN--VETVEYKNISFTVWDVGGQDKIR---------PL---W 78 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccc--cCCccee--EEEEEECCEEEEEEECCCCHHHH---------HH---H
Confidence 3457999999999999999999987655322 1211111 12244567789999999974321 11 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC----Ce
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY----ER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~----~~ 291 (424)
...+..+|++++|+|+++.. ....+..++..+.. ...++.|+++|+||+|+.... ...+..+.+. .... ..
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~--s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~l~-l~~~~~~~~~ 154 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRD--RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-NAAEITDKLG-LHSLRQRHWY 154 (181)
T ss_pred HHHhccCCEEEEEEeCCcHH--HHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-CHHHHHHHhC-ccccCCCceE
Confidence 22367889999999997532 22233334444321 122358999999999987642 2222222221 1111 13
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++++||++|+|+++++++|.+.+.
T Consensus 155 ~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 155 IQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred EEeccCCCCCCHHHHHHHHHHHHh
Confidence 568999999999999999988764
No 143
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.79 E-value=2.3e-18 Score=150.16 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=95.0
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|||||||++++.+..+....+..+.+. ..........+.+|||||..... . .....+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~l~i~D~~G~~~~~---------~---~~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV---EMLQLEKHLSLTVWDVGGQEKMR---------T---VWKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce---EEEEeCCceEEEEEECCCCHhHH---------H---HHHHHh
Confidence 48999999999999999999887643322222111 11112345679999999975321 1 111246
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-----cCCCCCeEEE
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLPGYERIFM 294 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~ 294 (424)
..+|++++|+|+++..+ ...+..++.+... ....+.|+++|+||+|+.... ...+....+. ...+ .++++
T Consensus 66 ~~~~~iv~v~D~~~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~~~~~ 141 (160)
T cd04156 66 ENTDGLVYVVDSSDEAR--LDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-TAEEITRRFKLKKYCSDRD-WYVQP 141 (160)
T ss_pred ccCCEEEEEEECCcHHH--HHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-CHHHHHHHcCCcccCCCCc-EEEEe
Confidence 67899999999975421 2223333333221 111358999999999996421 1122222221 1111 24899
Q ss_pred EecCCCcChHHHHHHHHH
Q 014461 295 TSGLKGAGLKALTQYLME 312 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~ 312 (424)
|||++|.|+++++++|.+
T Consensus 142 ~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 142 CSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccccCCChHHHHHHHhc
Confidence 999999999999999864
No 144
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.79 E-value=3.7e-18 Score=149.04 Aligned_cols=144 Identities=18% Similarity=0.296 Sum_probs=94.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|+|||||+|+|.|.... . ..|.. ..+... .+|||||..... .. .....+..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~--~---~~~~~-----v~~~~~--~~iDtpG~~~~~-----~~---~~~~~~~~~ 62 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL--A---RKTQA-----VEFNDK--GDIDTPGEYFSH-----PR---WYHALITTL 62 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc--C---ccceE-----EEECCC--CcccCCccccCC-----HH---HHHHHHHHH
Confidence 6999999999999999999875421 1 11111 111121 269999985332 11 233334457
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC-CeEEEEecCC
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIFMTSGLK 299 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~iSA~~ 299 (424)
..+|++++|+|++...+... .++..+. .+.|+++++||+|+... +..... .+....++ .+++++||++
T Consensus 63 ~~ad~il~v~d~~~~~s~~~----~~~~~~~----~~~~ii~v~nK~Dl~~~--~~~~~~-~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 63 QDVDMLIYVHGANDPESRLP----AGLLDIG----VSKRQIAVISKTDMPDA--DVAATR-KLLLETGFEEPIFELNSHD 131 (158)
T ss_pred hcCCEEEEEEeCCCcccccC----HHHHhcc----CCCCeEEEEEccccCcc--cHHHHH-HHHHHcCCCCCEEEEECCC
Confidence 78999999999986543322 2333322 24689999999998653 222222 33223343 4699999999
Q ss_pred CcChHHHHHHHHHhcc
Q 014461 300 GAGLKALTQYLMEQAV 315 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~ 315 (424)
|.|+++|+++|.+.+.
T Consensus 132 g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 132 PQSVQQLVDYLASLTK 147 (158)
T ss_pred ccCHHHHHHHHHHhch
Confidence 9999999999988774
No 145
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2e-18 Score=175.37 Aligned_cols=165 Identities=21% Similarity=0.314 Sum_probs=124.8
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..+|+++|+||||||||+|+|+|.+.. +++.||+|.+...+.+...+.++.++|.||...-..... .+.+.+.+-
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~----DE~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSE----DEKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCc----hHHHHHHHH
Confidence 456999999999999999999998764 899999999999999999999999999999986543222 223333333
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.-..+|+++.|+|+++ +.......++ +.++ +.|+++++|++|..+.+ .+.-..+.+.+..+.+ ++++||+
T Consensus 78 l~~~~D~ivnVvDAtn-LeRnLyltlQ-LlE~------g~p~ilaLNm~D~A~~~-Gi~ID~~~L~~~LGvP-Vv~tvA~ 147 (653)
T COG0370 78 LEGKPDLIVNVVDATN-LERNLYLTLQ-LLEL------GIPMILALNMIDEAKKR-GIRIDIEKLSKLLGVP-VVPTVAK 147 (653)
T ss_pred hcCCCCEEEEEcccch-HHHHHHHHHH-HHHc------CCCeEEEeccHhhHHhc-CCcccHHHHHHHhCCC-EEEEEee
Confidence 3467899999999964 3332223333 3344 37899999999987653 2222234555566776 9999999
Q ss_pred CCcChHHHHHHHHHhccCCC
Q 014461 299 KGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~~~ 318 (424)
+|.|++++++.+.+......
T Consensus 148 ~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 148 RGEGLEELKRAIIELAESKT 167 (653)
T ss_pred cCCCHHHHHHHHHHhccccc
Confidence 99999999999998776544
No 146
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.79 E-value=2.9e-18 Score=156.04 Aligned_cols=161 Identities=18% Similarity=0.289 Sum_probs=98.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEEEec---------------------------CC----
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK---------------------------AD---- 186 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~---------------------------~~---- 186 (424)
.+|+++|+.|+|||||+.+|.+.... ......+.|.......+.+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 36899999999999999999764210 0000001111100000000 02
Q ss_pred --ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 187 --TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 187 --~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
.++.||||||... ....++..+..+|++++|+|++++. .......+..+...+ ..|+++|
T Consensus 81 ~~~~i~~iDtPG~~~------------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~-----~~~iiiv 143 (203)
T cd01888 81 LVRHVSFVDCPGHEI------------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG-----LKHIIIV 143 (203)
T ss_pred cccEEEEEECCChHH------------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC-----CCcEEEE
Confidence 6799999999632 2445566677889999999998632 222233333343322 2468999
Q ss_pred EecCCCCCChhhHHHH---HHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 264 MNKVDLVTKKKDLLKV---AEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~---~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
+||+|+... ...... .+.+.... ...+++++||++|.|+++|+++|.+.++++|
T Consensus 144 vNK~Dl~~~-~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 144 QNKIDLVKE-EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred EEchhccCH-HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999763 222222 22222211 1235999999999999999999999887643
No 147
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=155.89 Aligned_cols=175 Identities=24% Similarity=0.319 Sum_probs=124.7
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
-....+.|+|.|+||||||||++++++.+.. +.++|.||.....|++..+..++.++||||+.+... .....+....-
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl-~ErN~IE~qAi 241 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL-EERNEIERQAI 241 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCCCc-cCCCCccccceeEeeeecCCceEEEecCCcccCCCh-HHhcHHHHHHH
Confidence 3456789999999999999999999998764 899999999999999999999999999999975321 11111211122
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.++. .-.++|+|++|.+.......+.-..++++..... +.|+++|+||+|.... +...+....+... +......
T Consensus 242 ~AL~--hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~-e~~~~~~~~~~~~-~~~~~~~ 315 (346)
T COG1084 242 LALR--HLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADE-EKLEEIEASVLEE-GGEEPLK 315 (346)
T ss_pred HHHH--HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccch-hHHHHHHHHHHhh-ccccccc
Confidence 2222 3468999999998766555544445555544332 3689999999999864 3444443333333 3333677
Q ss_pred EecCCCcChHHHHHHHHHhccCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
+|+..+.+++.+.+.+...+...
T Consensus 316 ~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 316 ISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred eeeeehhhHHHHHHHHHHHhhch
Confidence 89999999999999888776443
No 148
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.78 E-value=5.5e-18 Score=151.49 Aligned_cols=159 Identities=17% Similarity=0.094 Sum_probs=100.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|.+|||||||++++..+.+... .+ |+. .....+...+..+.+|||||..... . ...
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~-T~~-~~~~~~~~~~~~~~l~D~~G~~~~~---------~---~~~ 79 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT--IP-TIG-FNVETVEYKNLKFTMWDVGGQDKLR---------P---LWR 79 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC-ccc-cceEEEEECCEEEEEEECCCCHhHH---------H---HHH
Confidence 458999999999999999999976555322 12 221 1122344567889999999975321 1 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCC-CeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGY-ERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~-~~~~ 293 (424)
..+..+|++|+|+|+++..+ ......++.... .....+.|+++|+||+|+.+.. ...+....+... ... ..++
T Consensus 80 ~~~~~ad~iI~v~D~t~~~s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~l~~~~~~~~~~~~~ 156 (182)
T PTZ00133 80 HYYQNTNGLIFVVDSNDRER--IGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-STTEVTEKLGLHSVRQRNWYIQ 156 (182)
T ss_pred HHhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-CHHHHHHHhCCCcccCCcEEEE
Confidence 34678999999999975321 222233333332 1112347899999999986531 122222322211 011 1367
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|+++++++|.+.+.
T Consensus 157 ~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 157 GCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred eeeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999988663
No 149
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.78 E-value=2e-18 Score=150.48 Aligned_cols=153 Identities=18% Similarity=0.174 Sum_probs=94.8
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|+|||||++++....+... .+ |.......+...+..+.+|||||...+. . .....+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~---~~~~~~ 64 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT--IP--TIGFNVETVTYKNLKFQVWDLGGQTSIR---------P---YWRCYY 64 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc--CC--ccCcCeEEEEECCEEEEEEECCCCHHHH---------H---HHHHHh
Confidence 589999999999999999977655321 11 1111112344567789999999975321 1 112345
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeEEEEe
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIFMTS 296 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~iS 296 (424)
..+|++++|+|+++..+. .....++..+ ......+.|+++|+||+|+.+.. ...+....+.... ...++++||
T Consensus 65 ~~~~~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd04151 65 SNTDAIIYVVDSTDRDRL--GTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-SEAEISEKLGLSELKDRTWSIFKTS 141 (158)
T ss_pred cCCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-CHHHHHHHhCccccCCCcEEEEEee
Confidence 779999999999753211 1111222211 11112357999999999997532 1222222222110 112599999
Q ss_pred cCCCcChHHHHHHHHH
Q 014461 297 GLKGAGLKALTQYLME 312 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~ 312 (424)
|++|.|+++++++|.+
T Consensus 142 a~~~~gi~~l~~~l~~ 157 (158)
T cd04151 142 AIKGEGLDEGMDWLVN 157 (158)
T ss_pred ccCCCCHHHHHHHHhc
Confidence 9999999999999864
No 150
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.78 E-value=6.9e-19 Score=162.59 Aligned_cols=168 Identities=16% Similarity=0.151 Sum_probs=124.3
Q ss_pred ccCCCCCCCChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhH
Q 014461 14 AEKPNKPRLNPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTW 76 (424)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~ 76 (424)
-++|.-.-+..||=+||+++..+... .++++|++||+||||||+++ |+ |+||+++...+..
T Consensus 17 ~~~~~~~~~~~wfpgHmakalr~i~~--~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~ 94 (335)
T KOG2485|consen 17 VIFAKYNMPRRWFPGHMAKALRAIQN--RLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKI 94 (335)
T ss_pred ccccccCCccccCchHHHHHHHHHHh--hcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHH
Confidence 34444444567888999999999998 88899999999999999999 55 5599998888899
Q ss_pred HHHHHhcCCe-EEEeeccccc---cchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCCh
Q 014461 77 DEKYRERTDR-IVFGEEAQKG---KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK 152 (424)
Q Consensus 77 ~~~~~~~~~~-i~f~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GK 152 (424)
.+++..++.. .++.+++..- ...+ ..+...+.+... +.-.......+|+|+|.||+||
T Consensus 95 iq~~~~~~~~~~~~~~c~~~~~~~v~~l----------~~il~~~~~~l~--------r~irt~~~~~~vmVvGvPNVGK 156 (335)
T KOG2485|consen 95 IQYLEWQNLESYIKLDCNKDCNKQVSPL----------LKILTILSEELV--------RFIRTLNSEYNVMVVGVPNVGK 156 (335)
T ss_pred HHHHHhhcccchhhhhhhhhhhhccccH----------HHHHHHHHHHHH--------HhhcccCCceeEEEEcCCCCCh
Confidence 9999877655 4555554333 3333 111111111111 1112345678999999999999
Q ss_pred hHHHHhHhC-----CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 153 SSIINYMVG-----TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 153 StLin~l~~-----~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
|||+|++.. .+.+.++..+|.|+.....+.......++++||||+..+.
T Consensus 157 SsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~ 210 (335)
T KOG2485|consen 157 SSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPS 210 (335)
T ss_pred HHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCC
Confidence 999998863 3567789999999988766666778889999999998774
No 151
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.78 E-value=3e-18 Score=151.78 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=101.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++++++|.+|+|||||++++.+..+. .....|..+.....+..++ ..+.+|||||...+... . .
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~--~ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYP--TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKL----------R--P 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccc----------c--c
Confidence 47999999999999999999876653 3344444333222233333 46789999998544211 0 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~~~~ 284 (424)
..+..+|++++|+|++++.+. ..+ ..|+..+... .++.|+++|+||+|+.... ....+....+.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a 143 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSF--QNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALA 143 (173)
T ss_pred cccCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHH
Confidence 245788999999999764322 222 2344433321 2358999999999986431 11223344555
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHH
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLM 311 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~ 311 (424)
...+...+++|||++|.|++++++.+.
T Consensus 144 ~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 144 EKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 555665799999999999999999875
No 152
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.9e-18 Score=153.08 Aligned_cols=148 Identities=18% Similarity=0.205 Sum_probs=102.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcc------e---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKV------A---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~------~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 203 (424)
..+|+++|++|+|||||+++|++... . ......++|.+.....+..++.++.++||||+..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 36899999999999999999985310 0 0112346666665555667788999999999753
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHH---HH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL---KV 279 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~---~~ 279 (424)
....++..+..+|++++|+|+..+...........+...+ .| +|+|+||+|+........ +.
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~------~~~iIvviNK~D~~~~~~~~~~~~~~ 143 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG------VPYIVVFLNKADMVDDEELLELVEME 143 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCcEEEEEeCCCCCCcHHHHHHHHHH
Confidence 2444556678899999999998776666656666666543 45 779999999975322122 22
Q ss_pred HHHHhcCCCC----CeEEEEecCCCcChH
Q 014461 280 AEQFKHLPGY----ERIFMTSGLKGAGLK 304 (424)
Q Consensus 280 ~~~~~~~~~~----~~~~~iSA~~g~gi~ 304 (424)
+..+....++ .+++++||++|.|+.
T Consensus 144 i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 144 VRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred HHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 2233222232 469999999999853
No 153
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.78 E-value=4.3e-18 Score=150.82 Aligned_cols=158 Identities=13% Similarity=0.124 Sum_probs=100.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|++|||||||++++.+..+.. ....+........+..+ ...+.+|||||....... . .
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~--~ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------R--P 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhc----------c--c
Confidence 579999999999999999999876642 22222222222223333 346789999997543210 0 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~~~ 284 (424)
..+..+|++++|+|+++.. ....+. .|+..+... .++.|+++|+||+|+....... ....+.+.
T Consensus 68 ~~~~~~d~~i~v~~~~~~~--s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~ 144 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPD--SLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMA 144 (175)
T ss_pred cccCCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHH
Confidence 2357789999999997532 112221 233333221 2358999999999986532111 11223333
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...+...+++|||++|.|+++++++|.+.+
T Consensus 145 ~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 145 NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 334444699999999999999999998754
No 154
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.78 E-value=6.3e-18 Score=147.13 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=98.8
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
||+++|.+|||||||++++++..........+.+. ..+...+..+.+|||||..... ... ...+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~---------~~~---~~~~ 64 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNV----ETVEYKNVSFTVWDVGGQDKIR---------PLW---KHYY 64 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcce----EEEEECCEEEEEEECCCChhhH---------HHH---HHHh
Confidence 58999999999999999999887432222222222 2244567789999999975431 111 1245
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeEEEEe
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERIFMTS 296 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~iS 296 (424)
..+|++++|+|++++. .......++..+.. ....+.|+++|+||+|+.... ...+..+.+... ....+++++|
T Consensus 65 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 65 ENTNGIIFVVDSSDRE--RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-SVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred ccCCEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-CHHHHHHhhChhhccCCcEEEEEee
Confidence 6789999999997532 12223333333222 112358999999999997642 222222332211 1233699999
Q ss_pred cCCCcChHHHHHHHHH
Q 014461 297 GLKGAGLKALTQYLME 312 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~ 312 (424)
|++|.|+++++++|..
T Consensus 142 a~~~~gv~~~~~~l~~ 157 (158)
T cd00878 142 AVTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 155
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.78 E-value=4e-18 Score=153.96 Aligned_cols=147 Identities=17% Similarity=0.215 Sum_probs=91.5
Q ss_pred eEEEEEecCCCChhHHHHhHhC--Ccceee-------------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG--TKVAAV-------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~--~~~~~~-------------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~ 204 (424)
.+|+++|.+|+|||||+++|++ ..+... ....++|.......+...+..+.+|||||+..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 5799999999999999999986 222111 0113344444444456677889999999986431
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-h-HHHHHHH
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQ 282 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~ 282 (424)
. .....+..+|++++|+|++++.......+...+.. .+.|+++|+||+|+..... . ..+..+.
T Consensus 80 ------~---~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~ 144 (194)
T cd01891 80 ------G---EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE------LGLKPIVVINKIDRPDARPEEVVDEVFDL 144 (194)
T ss_pred ------H---HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH------cCCCEEEEEECCCCCCCCHHHHHHHHHHH
Confidence 1 12234577899999999976533222222222222 1478999999999975322 1 2222222
Q ss_pred Hhc------CCCCCeEEEEecCCCcChHH
Q 014461 283 FKH------LPGYERIFMTSGLKGAGLKA 305 (424)
Q Consensus 283 ~~~------~~~~~~~~~iSA~~g~gi~~ 305 (424)
+.. ..+. +++++||++|.|+.+
T Consensus 145 ~~~~~~~~~~~~~-~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 145 FIELGATEEQLDF-PVLYASAKNGWASLN 172 (194)
T ss_pred HHHhCCccccCcc-CEEEeehhccccccc
Confidence 211 1233 589999999987644
No 156
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.78 E-value=7.8e-18 Score=156.19 Aligned_cols=160 Identities=20% Similarity=0.304 Sum_probs=112.5
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.||+|||||+|+|.+... .+++.+++|.....+.+...+.++.+|||||+....... .......+..+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~-----~~~~~~~l~~~ 75 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG-----KGRGRQVIAVA 75 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccc-----hhHHHHHHHhh
Confidence 689999999999999999998764 367788888888788787888999999999986542111 12233345567
Q ss_pred ccccEEEEEEeCCCCCCC-------------------------------------------chHHHHHHHHHhccCC---
Q 014461 221 NLFEVLMVVFDVHRHLTS-------------------------------------------PDSRVIRLIERMGKQA--- 254 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~-------------------------------------------~~~~~~~~l~~~~~~~--- 254 (424)
+.+|++++|+|+++.... ....+...|++++...
T Consensus 76 ~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v 155 (233)
T cd01896 76 RTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADV 155 (233)
T ss_pred ccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEE
Confidence 889999999998643210 0122333333332111
Q ss_pred ------------------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 255 ------------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 255 ------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
....|+++|+||+|+... .... .+... ..++++||++|.|++++++.|.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-~~~~----~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 156 LIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-EELD----LLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-HHHH----HHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 123689999999999763 2222 23332 2489999999999999999998866
No 157
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.9e-18 Score=146.52 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=121.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE--EEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL--GVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~--~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+|+.++|..|||||+|+.+++...+..+.+ .|...-. ..+..+ ..++.+|||.|+..+. .
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr------------s 70 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR------------S 70 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHHHH------------H
Confidence 5789999999999999999999888764443 2221111 113333 4458899999986431 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
-+.++++.+-.+|+|+|.++. +....+..||.+......++.-+++++||+||...++...+..+.|++..++. +++
T Consensus 71 v~~syYr~a~GalLVydit~r--~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLi-fmE 147 (216)
T KOG0098|consen 71 VTRSYYRGAAGALLVYDITRR--ESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLI-FME 147 (216)
T ss_pred HHHHHhccCcceEEEEEccch--hhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCce-eeh
Confidence 223457888999999999763 34456778888777665667889999999999988777788889999998887 889
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++++|+++.|......+.
T Consensus 148 TSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 148 TSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred hhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999988776653
No 158
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.77 E-value=3.7e-18 Score=154.45 Aligned_cols=180 Identities=13% Similarity=0.130 Sum_probs=119.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhh-hhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV-KVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~-~~~~~~~~ 217 (424)
.+|+++|.+|+|||||+|+|+|.+....+. .+++|+..........+.++.++||||+.+.... .... ....+..+
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~--~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVS--PEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCC--hHHHHHHHHHHHH
Confidence 369999999999999999999987654443 3466766666656678889999999999865321 1222 23333344
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHLP 287 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~~ 287 (424)
......|++++|+|+.+ ++..+..+.+.+.+...... -.++++|+|+.|..... ..+....+.+...+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~-~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKV-LDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHh-HhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 44577899999999976 67767777777776532211 14689999999976532 12222222222111
Q ss_pred -CCCeEEEEecCCCcChHHHHHHHHHhccC-CCCCCCCC
Q 014461 288 -GYERIFMTSGLKGAGLKALTQYLMEQAVQ-RPWSEDPL 324 (424)
Q Consensus 288 -~~~~~~~iSA~~g~gi~~L~~~i~~~l~~-~~~~~~~~ 324 (424)
.+....+ |+..+.++++|++.|.+.+++ ++|.|...
T Consensus 157 ~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~ 194 (196)
T cd01852 157 VAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTND 194 (196)
T ss_pred EEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 1112223 466788999999999999987 66666543
No 159
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.77 E-value=5.9e-18 Score=155.43 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=104.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++.+..+.. .+..|........+..+ ...+.+|||+|...+.. +. -
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~--~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~----------l~--~ 67 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPG--SYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDN----------VR--P 67 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--ccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHH----------Hh--H
Confidence 689999999999999999999877642 22223222222222333 34578999999754311 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHHHh
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQFK 284 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~~~ 284 (424)
..+..+|++++|+|.++..+ ...+ ..|...... ..++.|+++|+||+|+..... ...+..+.+.
T Consensus 68 ~~~~~~d~illvfdis~~~S--f~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~a 144 (222)
T cd04173 68 LAYPDSDAVLICFDISRPET--LDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLA 144 (222)
T ss_pred HhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHH
Confidence 24678999999999976422 2223 234333322 224689999999999965311 1223455666
Q ss_pred cCCCCCeEEEEecCCCcC-hHHHHHHHHHhcc
Q 014461 285 HLPGYERIFMTSGLKGAG-LKALTQYLMEQAV 315 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~ 315 (424)
+..+...+++|||+++.| |+++|+.......
T Consensus 145 k~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~ 176 (222)
T cd04173 145 KQVGAVSYVECSSRSSERSVRDVFHVATVASL 176 (222)
T ss_pred HHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHH
Confidence 667765799999999985 9999999887543
No 160
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.77 E-value=2.6e-18 Score=164.38 Aligned_cols=159 Identities=25% Similarity=0.359 Sum_probs=119.7
Q ss_pred ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCC
Q 014461 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTD 85 (424)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~ 85 (424)
..||-+||.++..|... .+..+|+++++.|+|.|..+ ++ |+||++....+.|..++...+.
T Consensus 4 ~~wfpgHm~k~~~~l~~--~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~ 81 (287)
T PRK09563 4 IQWFPGHMAKARREIKE--NLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGI 81 (287)
T ss_pred CcCcHHHHHHHHHHHHH--HhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCC
Confidence 46899999999999988 88899999999999999877 44 5599877667789999977676
Q ss_pred eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461 86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (424)
Q Consensus 86 ~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~ 164 (424)
.+++.++ ++.|..++ ......++.....+ ...+.......+++++|.||||||||+|+|.+.+.
T Consensus 82 ~vi~vSa~~~~gi~~L----------~~~l~~~l~~~~~~-----~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 82 KALAINAKKGQGVKKI----------LKAAKKLLKEKNER-----RKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred eEEEEECCCcccHHHH----------HHHHHHHHHHHHhh-----hhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 7788888 77777766 22222222211110 01112234568999999999999999999999998
Q ss_pred eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 165 ~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
+.+++.+++|+..... . -+.++.++||||+..+.
T Consensus 147 ~~~~~~~g~T~~~~~~--~-~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 147 AKTGNRPGVTKAQQWI--K-LGKGLELLDTPGILWPK 180 (287)
T ss_pred cccCCCCCeEEEEEEE--E-eCCcEEEEECCCcCCCC
Confidence 8899999999987542 2 24568999999997653
No 161
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.77 E-value=1.5e-17 Score=143.32 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=97.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
++|+++|.+|+|||||+|++.+.. ......+.++.......+..++ ..+.+|||||...... ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-----~~~~------ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA-----IRRL------ 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH-----HHHH------
Confidence 689999999999999999999887 4455666666666655555666 6789999999654311 1111
Q ss_pred hhcccccEEEEEEeCCCCCCCc---hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSP---DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~---~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
....++.++.++|........ .......+..... .+.|+++|+||+|+.... ............+..++++
T Consensus 70 -~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 143 (161)
T TIGR00231 70 -YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIP 143 (161)
T ss_pred -HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEE
Confidence 122345555555543221111 1122222322221 157899999999997642 2222222233334445999
Q ss_pred EecCCCcChHHHHHHHH
Q 014461 295 TSGLKGAGLKALTQYLM 311 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~ 311 (424)
+||++|.|+++++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999874
No 162
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=2.9e-18 Score=158.44 Aligned_cols=167 Identities=25% Similarity=0.309 Sum_probs=118.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCcc-EEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ-ICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~-i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
....|++||.||+|||||+|+|...+- .+.+++.||..+..+.+.+++.. +.+-|.||+.+..+.- +.+-...
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n-----kGlG~~F 268 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN-----KGLGYKF 268 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCcccccccccc-----CcccHHH
Confidence 345689999999999999999998776 58999999999988887776654 9999999998754311 1112233
Q ss_pred HhhcccccEEEEEEeCCCCCC-CchHHHHHHHHHhcc--CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLT-SPDSRVIRLIERMGK--QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~-~~~~~~~~~l~~~~~--~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
+..+..|+.++||+|.+.... .+...+..+..++.. ....+.|.++|+||+|+.+..+.. ++++.+......++
T Consensus 269 LrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~---l~~L~~~lq~~~V~ 345 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL---LSSLAKRLQNPHVV 345 (366)
T ss_pred HHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH---HHHHHHHcCCCcEE
Confidence 456677899999999986422 222333333333221 222357899999999997543332 34444444444699
Q ss_pred EEecCCCcChHHHHHHHHHh
Q 014461 294 MTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~ 313 (424)
++||++|+|+.+|++.|.+.
T Consensus 346 pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred EeeeccccchHHHHHHHhhc
Confidence 99999999999999988654
No 163
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=167.49 Aligned_cols=159 Identities=26% Similarity=0.410 Sum_probs=120.8
Q ss_pred ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcC-
Q 014461 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERT- 84 (424)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~- 84 (424)
.+++-+|+.++..+... .+..+|+|+++.|||+|.++ ++ |.||+++...++|..++.+..
T Consensus 14 i~~~~g~~~k~~~~~~~--~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 14 IQWFPGHMKKAKRQLKE--VLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccCCCCchHHHHHHHHH--hcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 35567788888888877 88889999999999999999 66 449999999999999999985
Q ss_pred CeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 85 DRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 85 ~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
...++.++ ++.+...+ ......+....++... .+.......+++++|.||||||||||+|++..
T Consensus 92 ~~~~~v~~~~~~~~~~i----------~~~~~~~~~~~i~~~~-----~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~ 156 (322)
T COG1161 92 IKPIFVSAKSRQGGKKI----------RKALEKLSEEKIKRLK-----KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKK 156 (322)
T ss_pred CccEEEEeecccCccch----------HHHHHHHHHHHHHHHh-----hcCCCccceEEEEEcCCCCcHHHHHHHHhccc
Confidence 44577777 66666666 2222222222221111 11223456889999999999999999999999
Q ss_pred ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 164 VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 164 ~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
.+.+++.||+|........ +..+.++||||+..+.
T Consensus 157 ~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~ 191 (322)
T COG1161 157 VAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPK 191 (322)
T ss_pred ceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCC
Confidence 9999999999998765433 3348999999998764
No 164
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.77 E-value=8.2e-18 Score=149.82 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=100.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+|+++|.+|||||||++++.+..+. .....++........... +..+.+|||||..... . . ..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~-~--~~ 67 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV--ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS---------I-L--PQ 67 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH---------H-H--HH
Confidence 57999999999999999999987653 222233322222223333 3457899999975421 0 1 11
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|.++.. ....+..+...+.. ....+.|+++|+||+|+...+.........+....+. +++++|
T Consensus 68 ~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 144 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRK--SFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGA-AFLESS 144 (180)
T ss_pred HHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCC-eEEEEe
Confidence 2345689999999997532 22222222222211 1123478999999999875322222223333333343 589999
Q ss_pred cCCCcChHHHHHHHHHhccCC
Q 014461 297 GLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~ 317 (424)
|++|.|+++++++|.+.+...
T Consensus 145 a~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 145 ARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999877543
No 165
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=9e-18 Score=147.97 Aligned_cols=153 Identities=17% Similarity=0.138 Sum_probs=98.8
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|||||||++++.+.......+..+.+ ...+...+..+.+|||||.... ... ....+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~~~i~D~~G~~~~---------~~~---~~~~~ 64 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT----PTKLRLDKYEVCIFDLGGGANF---------RGI---WVNYY 64 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce----EEEEEECCEEEEEEECCCcHHH---------HHH---HHHHH
Confidence 3789999999999999999976322222222222 2234456788999999996432 111 22456
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHH-----HHhcCCCC-CeEE
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAE-----QFKHLPGY-ERIF 293 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 293 (424)
..+|++++|+|+++.. .......++..+... ...+.|+++|+||+|+..... ..+..+ .+.+..+. ..++
T Consensus 65 ~~a~~ii~V~D~s~~~--s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~-~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 65 AEAHGLVFVVDSSDDD--RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL-GADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred cCCCEEEEEEECCchh--HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC-HHHHHHhcCcccccCCCCceEEEE
Confidence 7899999999997632 233344455544322 223589999999999976431 112222 22212222 2578
Q ss_pred EEecCCC------cChHHHHHHHHH
Q 014461 294 MTSGLKG------AGLKALTQYLME 312 (424)
Q Consensus 294 ~iSA~~g------~gi~~L~~~i~~ 312 (424)
+|||++| .|+++.++||.+
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 8999998 899999999964
No 166
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.77 E-value=9.9e-18 Score=148.16 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=99.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|++|||||||++++.+..+.......+.+. ..+...+..+.+|||||.... ....
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~----~~i~~~~~~~~~~D~~G~~~~---------~~~~--- 75 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI----KTVQSDGFKLNVWDIGGQRAI---------RPYW--- 75 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce----EEEEECCEEEEEEECCCCHHH---------HHHH---
Confidence 457899999999999999999999876543333222221 223455788999999997432 1111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 292 (424)
...+..+|++++|+|+++.. .......++.... .....+.|+++++||+|+.... ......+.+.-.. ....+
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKK--RLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-PAEEIAEALNLHDLRDRTWHI 152 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-CHHHHHHHcCCcccCCCeEEE
Confidence 12357789999999997521 1112222222221 1112248999999999987542 2233333332110 11147
Q ss_pred EEEecCCCcChHHHHHHHHH
Q 014461 293 FMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~ 312 (424)
+++||++|+|+++++++|.+
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 167
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.77 E-value=4.7e-18 Score=148.52 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=108.7
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
||+++|.+|||||||++++.+..+.. ....|. .+.....+..++ ..+.+||++|...+. . .. .
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~----~~--~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD------S----LR--D 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH------H----HH--H
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--cccccccccccccccccccccccccccccccccccc------c----cc--c
Confidence 68999999999999999999876542 222222 233333333333 458999999975331 1 11 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|.++. .....+..|+..+......+.|+++|+||.|+...+....+..+.+....+ ..++++||
T Consensus 67 ~~~~~~~~~ii~fd~~~~--~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa 143 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDE--ESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSA 143 (162)
T ss_dssp HHHTTESEEEEEEETTBH--HHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBT
T ss_pred cccccccccccccccccc--ccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEEC
Confidence 236778999999999753 233345566666554444458999999999998643333445566666666 56999999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
++|.|+.++|..+.+.+
T Consensus 144 ~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 144 KNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998865
No 168
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.76 E-value=3.6e-18 Score=162.51 Aligned_cols=158 Identities=25% Similarity=0.357 Sum_probs=118.2
Q ss_pred hhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCCe
Q 014461 24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTDR 86 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~~ 86 (424)
.||-+||.++..|... .+..+|+++++.|+|.|..+ ++ |+||++++....|..++...+..
T Consensus 2 ~WfpgHm~k~~~~~~~--~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~ 79 (276)
T TIGR03596 2 QWFPGHMAKARREIKE--KLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIK 79 (276)
T ss_pred ccChHHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCe
Confidence 5889999999999988 88889999999999999887 43 66998776678899988776767
Q ss_pred EEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcce
Q 014461 87 IVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVA 165 (424)
Q Consensus 87 i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~ 165 (424)
+++.++ ++.|..++ .......+..... ....+.......+++++|.||||||||+|+|.+.+..
T Consensus 80 vi~iSa~~~~gi~~L----------~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~ 144 (276)
T TIGR03596 80 ALAINAKKGKGVKKI----------IKAAKKLLKEKNE-----KLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVA 144 (276)
T ss_pred EEEEECCCcccHHHH----------HHHHHHHHHHhhh-----hhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCcc
Confidence 888888 77777766 1111222211110 0001112345689999999999999999999999888
Q ss_pred eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 166 AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 166 ~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
.++..+++|+......+ +..+.++||||+..+.
T Consensus 145 ~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~ 177 (276)
T TIGR03596 145 KVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPK 177 (276)
T ss_pred ccCCCCCeecceEEEEe---CCCEEEEECCCcccCC
Confidence 89999999988754322 3468999999997653
No 169
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.76 E-value=7.9e-18 Score=151.97 Aligned_cols=157 Identities=15% Similarity=0.149 Sum_probs=100.7
Q ss_pred ceEEEEEecCCCChhHHHH-hHhCCccee---ecCCCCcee--eEEE-E---------EEecCCccEEEEeCCCcccCCC
Q 014461 139 SVAVGIIGAPNAGKSSIIN-YMVGTKVAA---VSRKTNTTT--HEVL-G---------VMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin-~l~~~~~~~---~~~~~~tt~--~~~~-~---------~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
.++|+++|.+|||||||+. ++.+..+.. ......|.. +... . .+......+.+|||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3689999999999999996 555443210 112222221 1110 0 12223456899999997531
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCC---------
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTK--------- 272 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--------- 272 (424)
+. ...+..+|++++|+|.++..+. ..+. .|+..+.... ++.|+++|+||+|+...
T Consensus 80 ----------~~--~~~~~~ad~iilv~d~t~~~Sf--~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 80 ----------DR--RFAYGRSDVVLLCFSIASPNSL--RNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred ----------hh--cccCCCCCEEEEEEECCChhHH--HHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcc
Confidence 11 1246789999999999764332 2232 2444443222 35799999999998641
Q ss_pred ----------hhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 273 ----------KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 273 ----------~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
+....+..+.+++..+. .+++|||++|.||+++|+.+.+.
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 22334456667776676 59999999999999999998764
No 170
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.76 E-value=7.4e-18 Score=148.07 Aligned_cols=151 Identities=16% Similarity=0.126 Sum_probs=97.9
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (424)
|+++|.+|||||||++++.+..+. .....|.... ...+...+..+.+|||||...+. . .....++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~--~~~~pt~g~~-~~~i~~~~~~l~i~Dt~G~~~~~---------~---~~~~~~~ 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSL--ESVVPTTGFN-SVAIPTQDAIMELLEIGGSQNLR---------K---YWKRYLS 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCc--ccccccCCcc-eEEEeeCCeEEEEEECCCCcchh---------H---HHHHHHh
Confidence 789999999999999999987543 2222221111 12244567789999999975431 1 1113467
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-----HHHHhcCCCCCeEEEEe
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-----AEQFKHLPGYERIFMTS 296 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~~~iS 296 (424)
.+|++++|+|+++.. .......++.++.... ++.|+++|+||+|+..... .... ...+....+. .++++|
T Consensus 67 ~ad~ii~V~D~t~~~--s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~S 141 (164)
T cd04162 67 GSQGLIFVVDSADSE--RLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARS-VQEIHKELELEPIARGRRW-ILQGTS 141 (164)
T ss_pred hCCEEEEEEECCCHH--HHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCC-HHHHHHHhCChhhcCCCce-EEEEee
Confidence 889999999997643 1223344555543222 4689999999999876432 1111 2333333333 478888
Q ss_pred cCC------CcChHHHHHHHHH
Q 014461 297 GLK------GAGLKALTQYLME 312 (424)
Q Consensus 297 A~~------g~gi~~L~~~i~~ 312 (424)
|++ |+||+++|+.+..
T Consensus 142 a~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 142 LDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ecCCCChhHHHHHHHHHHHHhc
Confidence 888 9999999998764
No 171
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.76 E-value=7.4e-18 Score=143.79 Aligned_cols=167 Identities=18% Similarity=0.159 Sum_probs=115.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|.++|.+|||||||+|++...++..-... .+....+....+...-..+.+|||.|+..+....
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg----------- 75 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLG----------- 75 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcc-----------
Confidence 3468999999999999999999998776421111 0100111111123333457899999998764211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHH----HHHhccCCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL----IERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~----l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~ 289 (424)
...++.+|++++|+|+...-+ ...+..| +.......+..-|+|+++||+|+... +....+.++.|+...+.
T Consensus 76 -~aFYRgaDcCvlvydv~~~~S--fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 76 -VAFYRGADCCVLVYDVNNPKS--FENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred -cceecCCceEEEEeecCChhh--hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 234788999999999965322 2233333 33333333345799999999999763 45667778888888888
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
.++|++|||.+.||++.|+.+...+...
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHHhc
Confidence 7899999999999999999999877543
No 172
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.76 E-value=5.7e-18 Score=140.95 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=115.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..++|+++|.+|||||||+-++....+....+. .+.........+.....++.+|||.|+..++...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLT------------ 77 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLT------------ 77 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccC------------
Confidence 468999999999999999999998776432221 1111111121233445568999999998764322
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
-++++.|..+|+|+|++.+. ....+..|++++.... .+++-.++|+||+|....+....+....|+..++.. ++++
T Consensus 78 pSyyRgaqGiIlVYDVT~Rd--tf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~L-FiE~ 154 (209)
T KOG0080|consen 78 PSYYRGAQGIILVYDVTSRD--TFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCL-FIEC 154 (209)
T ss_pred HhHhccCceeEEEEEccchh--hHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcE-EEEc
Confidence 14568889999999997643 2334456666655432 234556899999998765555555556676666665 8999
Q ss_pred ecCCCcChHHHHHHHHHhccCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
||++.+|++..|+.+.+.+.+.|
T Consensus 155 SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 155 SAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred chhhhccHHHHHHHHHHHHhcCc
Confidence 99999999999999999887655
No 173
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=3.1e-17 Score=141.42 Aligned_cols=158 Identities=27% Similarity=0.330 Sum_probs=107.3
Q ss_pred EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccc
Q 014461 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNL 222 (424)
Q Consensus 144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (424)
++|++|+|||||+|+|.+......+...++|........... +..+.+|||||+........ .........+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~-----~~~~~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR-----EREELARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh-----hHHHHHHHHHHh
Confidence 589999999999999998877656677777766655554444 67899999999876532111 111233345677
Q ss_pred ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH---HHHhcCCCCCeEEEEecCC
Q 014461 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA---EQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~iSA~~ 299 (424)
+|++++|+|++......... ++..... .+.|+++|+||+|+..... ..... ..........+++++||++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~---~~~~~~~---~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sa~~ 148 (163)
T cd00880 76 ADLILFVVDADLRADEEEEK---LLELLRE---RGKPVLLVLNKIDLLPEEE-EEELLELRLLILLLLLGLPVIAVSALT 148 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHH---HHHHHHh---cCCeEEEEEEccccCChhh-HHHHHHHHHhhcccccCCceEEEeeec
Confidence 89999999998654433332 2222211 2478999999999987532 22221 1222233445699999999
Q ss_pred CcChHHHHHHHHHh
Q 014461 300 GAGLKALTQYLMEQ 313 (424)
Q Consensus 300 g~gi~~L~~~i~~~ 313 (424)
|.|+++++++|.+.
T Consensus 149 ~~~v~~l~~~l~~~ 162 (163)
T cd00880 149 GEGIDELREALIEA 162 (163)
T ss_pred cCCHHHHHHHHHhh
Confidence 99999999999865
No 174
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.76 E-value=8.1e-18 Score=152.34 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=98.6
Q ss_pred EecCCCChhHHHHhHhCCcceeecCCCCce---eeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461 145 IGAPNAGKSSIINYMVGTKVAAVSRKTNTT---THEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (424)
Q Consensus 145 vG~~~~GKStLin~l~~~~~~~~~~~~~tt---~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (424)
+|.+|||||||+++++...+.. ....|. .......+......+.+|||||...+.. + ....++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~--~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~----------l--~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG----------L--RDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCC--CCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh----------h--hHHHhc
Confidence 5999999999999999766532 222221 1111111222345789999999864321 1 113467
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGA 301 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 301 (424)
.+|++++|+|+++.. ....+..|+.++.... ++.|+++|+||+|+... ....+.. .+....++ .+++|||++|.
T Consensus 67 ~ad~~ilV~D~t~~~--S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~-~~~e~SAk~~~ 140 (200)
T smart00176 67 QGQCAIIMFDVTARV--TYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKSI-TFHRKKNL-QYYDISAKSNY 140 (200)
T ss_pred CCCEEEEEEECCChH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHHH-HHHHHcCC-EEEEEeCCCCC
Confidence 889999999998643 2233445555544322 35899999999998643 2112222 34334444 49999999999
Q ss_pred ChHHHHHHHHHhccC
Q 014461 302 GLKALTQYLMEQAVQ 316 (424)
Q Consensus 302 gi~~L~~~i~~~l~~ 316 (424)
||+++|++|.+.+..
T Consensus 141 ~v~~~F~~l~~~i~~ 155 (200)
T smart00176 141 NFEKPFLWLARKLIG 155 (200)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 175
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=1.7e-17 Score=148.91 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=102.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.+++++|++|+|||||++++....+.. ....+........+...+ ..+.+|||||...+.... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~---------~--- 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLR---------P--- 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccc---------h---
Confidence 479999999999999999998655532 222222222222223333 357899999976432110 0
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh----------hhHHHHHHHHhcC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK----------KDLLKVAEQFKHL 286 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----------~~~~~~~~~~~~~ 286 (424)
..+..+|++++|+|.++.. ....+. .|+..+... .++.|+++|+||+|+.... ....+....+.+.
T Consensus 68 ~~~~~a~~~llv~~i~~~~--s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (187)
T cd04129 68 LSYSKAHVILIGFAVDTPD--SLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE 144 (187)
T ss_pred hhcCCCCEEEEEEECCCHH--HHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH
Confidence 1346789999999996532 222232 344444322 2358999999999985421 1112234455555
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+...+|+|||++|.|++++|+++.+.+.
T Consensus 145 ~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 145 IGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred hCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 66657999999999999999999997764
No 176
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.75 E-value=1.6e-17 Score=173.03 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=110.1
Q ss_pred ecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccE
Q 014461 146 GAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEV 225 (424)
Q Consensus 146 G~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ 225 (424)
|.||||||||+|++++... .+++.+++|.+...+.+..++.++.+|||||+........ .+.+.+.+.....+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~----~e~v~~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL----EEEVARDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch----HHHHHHHHHhhcCCCE
Confidence 8999999999999999875 5889999999888777777888899999999976532111 1122222223457899
Q ss_pred EEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461 226 LMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (424)
Q Consensus 226 vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~ 305 (424)
+++|+|+++. .. . ..+..+... .+.|+++|+||+|+.+... .....+.+.+..+.+ ++++||++|.|+++
T Consensus 76 vI~VvDat~l-er-~---l~l~~ql~~---~~~PiIIVlNK~Dl~~~~~-i~~d~~~L~~~lg~p-vv~tSA~tg~Gi~e 145 (591)
T TIGR00437 76 VVNVVDASNL-ER-N---LYLTLQLLE---LGIPMILALNLVDEAEKKG-IRIDEEKLEERLGVP-VVPTSATEGRGIER 145 (591)
T ss_pred EEEEecCCcc-hh-h---HHHHHHHHh---cCCCEEEEEehhHHHHhCC-ChhhHHHHHHHcCCC-EEEEECCCCCCHHH
Confidence 9999999752 21 1 122222211 1479999999999865322 222345556556654 99999999999999
Q ss_pred HHHHHHHhc
Q 014461 306 LTQYLMEQA 314 (424)
Q Consensus 306 L~~~i~~~l 314 (424)
+++++.+..
T Consensus 146 L~~~i~~~~ 154 (591)
T TIGR00437 146 LKDAIRKAI 154 (591)
T ss_pred HHHHHHHHh
Confidence 999998765
No 177
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.75 E-value=2.6e-17 Score=166.31 Aligned_cols=154 Identities=16% Similarity=0.237 Sum_probs=105.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee------------------------------ecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~ 186 (424)
...++|+++|++|+|||||+++|+...... .....++|++.....+..++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 356899999999999999999998432111 11246788888877788888
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC--CCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--HLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~--~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.++.||||||+..+ .......+..+|++++|+|+++ +..........++...+ ..|+++|+
T Consensus 84 ~~i~liDtpG~~~~------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~-----~~~iivvi 146 (425)
T PRK12317 84 YYFTIVDCPGHRDF------------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG-----INQLIVAI 146 (425)
T ss_pred eEEEEEECCCcccc------------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC-----CCeEEEEE
Confidence 99999999997543 1222344577999999999987 54444444444444432 14689999
Q ss_pred ecCCCCCChh-hH---HHHHHHHhcCCCC----CeEEEEecCCCcChHHHH
Q 014461 265 NKVDLVTKKK-DL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 265 NK~Dl~~~~~-~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L~ 307 (424)
||+|+..... .+ .+.+..+....++ .+++++||++|.|++++.
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 9999975322 11 2223333333333 369999999999998743
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.74 E-value=4.3e-17 Score=168.97 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=105.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
..++.+|+++|++|+|||||+++|.+..+.. ...++.|.+.....+...+. .+.||||||+..+. .+..
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~---------~~r~ 153 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT---------SMRA 153 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh---------hHHH
Confidence 3467899999999999999999999877653 33455665544444444444 89999999986542 1111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHh---cCC-CC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFK---HLP-GY 289 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~---~~~-~~ 289 (424)
..+..+|++++|+|++++...........+... +.|+++++||+|+.... ......+..+. ..+ +.
T Consensus 154 ---rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~------~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~ 224 (587)
T TIGR00487 154 ---RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA------NVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGD 224 (587)
T ss_pred ---hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc------CCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCC
Confidence 345778999999999876544433333333222 47899999999996531 12222222111 111 22
Q ss_pred CeEEEEecCCCcChHHHHHHHHH
Q 014461 290 ERIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
.+++++||++|.|+++|+++|..
T Consensus 225 ~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 225 TIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred ceEEEEECCCCCChHHHHHhhhh
Confidence 35899999999999999999865
No 179
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.74 E-value=3.5e-17 Score=173.47 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=108.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++..|+++|++|+|||||+++|.+..+. .+...+.|.+.....+.+.+..+.||||||+..+. .+..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---------~m~~- 355 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---------AMRA- 355 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---------hHHH-
Confidence 457899999999999999999999887664 23445566555444556667889999999986542 1122
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHH---hcCC-CCC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQF---KHLP-GYE 290 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~---~~~~-~~~ 290 (424)
..+..+|++++|+|++++........+...... +.|+|+++||+|+.... ......+... ...+ +..
T Consensus 356 --rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~------~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~v 427 (787)
T PRK05306 356 --RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA------GVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDT 427 (787)
T ss_pred --hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc------CCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCc
Confidence 235668999999999876544443433333332 47899999999996532 1121111111 1111 224
Q ss_pred eEEEEecCCCcChHHHHHHHHH
Q 014461 291 RIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
+++++||++|.|+++|+++|..
T Consensus 428 p~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 428 IFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred eEEEEeCCCCCCchHHHHhhhh
Confidence 6999999999999999999875
No 180
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.74 E-value=3.1e-17 Score=137.87 Aligned_cols=141 Identities=18% Similarity=0.334 Sum_probs=98.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.||+++|++|+|||||+++|.+.... .. .|.. +.+.+ .++||||-.-.. ..+.......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~--~~---KTq~-----i~~~~---~~IDTPGEyiE~--------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR--YK---KTQA-----IEYYD---NTIDTPGEYIEN--------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC--cC---ccce-----eEecc---cEEECChhheeC--------HHHHHHHHHH
Confidence 47999999999999999999986542 11 1211 11223 569999965332 1233444455
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
..+||+|++|.|++++.......+... + ..|+|-|+||+|+....+++.. ...+....|...+|++|+.+
T Consensus 61 a~dad~V~ll~dat~~~~~~pP~fa~~---f------~~pvIGVITK~Dl~~~~~~i~~-a~~~L~~aG~~~if~vS~~~ 130 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPPGFASM---F------NKPVIGVITKIDLPSDDANIER-AKKWLKNAGVKEIFEVSAVT 130 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCchhhcc---c------CCCEEEEEECccCccchhhHHH-HHHHHHHcCCCCeEEEECCC
Confidence 678999999999987544333333222 2 3789999999999954455544 44444455777899999999
Q ss_pred CcChHHHHHHHH
Q 014461 300 GAGLKALTQYLM 311 (424)
Q Consensus 300 g~gi~~L~~~i~ 311 (424)
|+|+++|.++|.
T Consensus 131 ~eGi~eL~~~L~ 142 (143)
T PF10662_consen 131 GEGIEELKDYLE 142 (143)
T ss_pred CcCHHHHHHHHh
Confidence 999999999985
No 181
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=1.2e-16 Score=139.73 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=105.0
Q ss_pred EEEEecCCCChhHHHHhHhC-CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHHHHHhh
Q 014461 142 VGIIGAPNAGKSSIINYMVG-TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVESAWSA 219 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~-~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~~~~~ 219 (424)
|+++|.+|+|||||+|.|.+ ......+..+++|..... +.. +..+.+|||||+........ ...........+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 78999999999999999994 344445555566554332 222 23899999999865322110 01112223333334
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHH-HHhcCCCCCeEEEEe
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAE-QFKHLPGYERIFMTS 296 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~-~~~~~~~~~~~~~iS 296 (424)
....+++++++|...........+..++.... .|+++|+||+|+..... ....... .+.......+++++|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~------~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELG------IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC------CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 45568999999997654444455666776543 68999999999965321 1111112 222123445699999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|+++.|+++++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 182
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=2.2e-17 Score=136.34 Aligned_cols=116 Identities=29% Similarity=0.478 Sum_probs=88.2
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|.+|+|||||+|+|++.+...++..+++|+......+...+..+.++||||+..... .......+..++..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~---~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES---QDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH---HHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch---hhHHHHHHHHHHHHH
Confidence 58999999999999999999987878999999999987777777888999999999876421 111112455567777
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+|++++|+|++......+..+.++++ .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~~~~~~~~~~l~-------~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPITEDDKNILRELK-------NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSHHHHHHHHHHHH-------TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHh-------cCCCEEEEEcC
Confidence 8899999999986532323334444452 24799999998
No 183
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=7.7e-17 Score=139.43 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=95.7
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (424)
|+++|++|||||||+|+|.+..+.. ....+..... ..+..++..+.+|||||..... . .....+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~-~~~~~~~~~~~~~D~~g~~~~~---------~---~~~~~~~ 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE--DTIPTVGFNM-RKVTKGNVTLKVWDLGGQPRFR---------S---MWERYCR 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc--CccCCCCcce-EEEEECCEEEEEEECCCCHhHH---------H---HHHHHHh
Confidence 7899999999999999999876642 2222221111 1234456789999999975321 1 1123357
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeEEEEec
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERIFMTSG 297 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~~~iSA 297 (424)
.+|++++|+|+++.. .......++..+.. ....+.|+++|+||+|+.... ........+.. . .....++++||
T Consensus 67 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 143 (159)
T cd04159 67 GVNAIVYVVDAADRT--ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQMNLKSITDREVSCYSISC 143 (159)
T ss_pred cCCEEEEEEECCCHH--HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-CHHHHHHHhCcccccCCceEEEEEEe
Confidence 789999999996421 11222233333221 112357999999999987642 22222223211 1 11135899999
Q ss_pred CCCcChHHHHHHHHH
Q 014461 298 LKGAGLKALTQYLME 312 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~ 312 (424)
++|.|+++++++|.+
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999865
No 184
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.74 E-value=1.5e-16 Score=153.30 Aligned_cols=193 Identities=21% Similarity=0.227 Sum_probs=123.9
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------------CCccEEEEeCCCc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------------ADTQICIFDTPGL 197 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------------~~~~i~l~DtpG~ 197 (424)
|+++|.||||||||+|+|++... .++++|++|..+..+.... ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 57999999999999999998875 5789999998877665332 2246899999999
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-----------CchH-------HHH---------------
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----------SPDS-------RVI--------------- 244 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-----------~~~~-------~~~--------------- 244 (424)
..... .....-...+..++.||++++|+|++.... ++.. ++.
T Consensus 80 v~ga~-----~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~ 154 (318)
T cd01899 80 VPGAH-----EGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIV 154 (318)
T ss_pred CCCcc-----chhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64321 112233456677899999999999963100 0000 000
Q ss_pred -----------------------------HHHHHhccC------------------CCCCCcEEEEEecCCCCCChhhHH
Q 014461 245 -----------------------------RLIERMGKQ------------------APPKQKRVLCMNKVDLVTKKKDLL 277 (424)
Q Consensus 245 -----------------------------~~l~~~~~~------------------~~~~~p~ilV~NK~Dl~~~~~~~~ 277 (424)
..|++.... ....+|+|+|+||+|+... ....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~-~~~~ 233 (318)
T cd01899 155 RKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA-ENNI 233 (318)
T ss_pred HHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh-HHHH
Confidence 001000000 0124799999999998643 2222
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCcChHHHHH-HHHHhccCCCCCCCCCCc--chhhHHHHHHHHHHHHHHhh
Q 014461 278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQAVQRPWSEDPLTM--SEEVMKNISLEVVRERLLDH 346 (424)
Q Consensus 278 ~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~~~~~~~~~--~~~~~~~~~~e~ire~l~~~ 346 (424)
+ .+........++++||+.+.|+++|.+ .+.++++++++....... ++..+. ..+.++..++..
T Consensus 234 ~---~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~~~~~~~~~~~--~l~~i~d~~~~~ 300 (318)
T cd01899 234 S---KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDELGLSEKQKE--ALESIRDEVLDR 300 (318)
T ss_pred H---HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecccCCCCHHHHH--HHHHHHHHHHHh
Confidence 2 222333456799999999999999998 699999988754433322 444443 335555544443
No 185
>PRK09866 hypothetical protein; Provisional
Probab=99.73 E-value=3.3e-16 Score=158.56 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=81.7
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
.+++|+||||+..+.. ..+...+. ..+..+|+|+||+|+....+..+..+.+.+...+. ..|+++|+||
T Consensus 230 ~QIIFVDTPGIhk~~~----~~L~k~M~---eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K----~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ----PHLQKMLN---QQLARASAVLAVLDYTQLKSISDEEVREAILAVGQ----SVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCccc----hHHHHHHH---HHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCC----CCCEEEEEEc
Confidence 6799999999986432 11112222 25788999999999987667767777777765431 2489999999
Q ss_pred CCCCCCh----hhHHHHHHHH--hcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 267 VDLVTKK----KDLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 267 ~Dl~~~~----~~~~~~~~~~--~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
+|+.+.. +.+.+.+..+ .....+..+|||||++|.|+++|++.|...
T Consensus 299 IDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 299 FDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 9986422 2333333323 223456789999999999999999999874
No 186
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=2.8e-17 Score=143.62 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=121.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+||+++|.+|||||-|+.++....+..-+.. .+....+....+........+|||.|+..++. + +
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrA----------i--t 80 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRA----------I--T 80 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcc----------c--c
Confidence 468899999999999999999998877532221 12222222222333344568999999976531 1 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
-.+++.+-++++|+|.+.+.+. ..+..||+++.....+++++++|+||+||.+.+....+..+.+++..+.. ++++|
T Consensus 81 SaYYrgAvGAllVYDITr~~Tf--env~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~-f~EtS 157 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLF-FLETS 157 (222)
T ss_pred chhhcccceeEEEEechhHHHH--HHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCce-EEEec
Confidence 1356788999999999875443 47889999998888788999999999999886666666777788776665 99999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
|+.+.|+++.|+.+...+
T Consensus 158 Al~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 158 ALDATNVEKAFERVLTEI 175 (222)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999998877655
No 187
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.73 E-value=6.1e-17 Score=168.53 Aligned_cols=158 Identities=16% Similarity=0.236 Sum_probs=109.9
Q ss_pred EEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.|+++|++|+|||||+++|++..... .....+.|.+.....+...+..+.+|||||+..+ ...+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f------------~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF------------ISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH------------HHHHHh
Confidence 68999999999999999999744221 1234466666655556666788999999997432 344455
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChh--hHHHHHHHHhcCCC---CCeE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKK--DLLKVAEQFKHLPG---YERI 292 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~---~~~~ 292 (424)
.+..+|++++|+|++++..........++... +.| +++|+||+|+.+... ...+.+..+....+ ..++
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l------gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL------GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcE
Confidence 67789999999999876544444444445443 356 999999999986421 12222333332222 2469
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHh
Confidence 999999999999999999876643
No 188
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.73 E-value=4.6e-18 Score=161.51 Aligned_cols=148 Identities=24% Similarity=0.284 Sum_probs=113.8
Q ss_pred CCCCCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeeccccccchh
Q 014461 42 TENDCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRI 100 (424)
Q Consensus 42 ~~~~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l 100 (424)
.+..+|+|+||.|||+|+++ ++ ++||++++.+++|+.|++..+++|+|.++++......
T Consensus 143 vve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~ 222 (435)
T KOG2484|consen 143 VVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNS 222 (435)
T ss_pred HHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccc
Confidence 44578999999999999999 76 4499999999999999999999999999976654421
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG 180 (424)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~ 180 (424)
.......++..+.+-..|.... ......++++|+|+|.||+||||+||+|...+.+.+++.||.|+.....
T Consensus 223 ----~~~~~s~c~gae~l~~~lgny~-----~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV 293 (435)
T KOG2484|consen 223 ----KNLQSSVCFGAETLMKVLGNYC-----RKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEV 293 (435)
T ss_pred ----cccccchhhhHHHHHHHhcCcc-----cccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhe
Confidence 0111113344444444443322 2234578899999999999999999999999999999999999875532
Q ss_pred EEecCCccEEEEeCCCcccCC
Q 014461 181 VMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~~~ 201 (424)
.-+..+.|+|.||+....
T Consensus 294 ---~Ldk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 294 ---KLDKKIRLLDSPGIVPPS 311 (435)
T ss_pred ---eccCCceeccCCceeecC
Confidence 346789999999998553
No 189
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=7.7e-17 Score=169.41 Aligned_cols=160 Identities=15% Similarity=0.236 Sum_probs=105.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--Eec--CCccEEEEeCCCcccCCCCCChhhhhh
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTK--ADTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
..+...|+++|++|+|||||+++|.+..+.. +...+.|.+..... +.. .+..+.||||||+..+ ..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------~~ 310 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------SS 310 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHHH---------HH
Confidence 3467899999999999999999999876542 33344443322222 222 3578999999997532 11
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHH---hc-C
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQF---KH-L 286 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~---~~-~ 286 (424)
+. ...+..+|++++|+|++++........+..+... +.|+|+|+||+|+.... ......+..+ .. .
T Consensus 311 mr---~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~------~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 311 MR---SRGANVTDIAILIIAADDGVKPQTIEAINYIQAA------NVPIIVAINKIDKANANTERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HH---HHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc------CceEEEEEECCCccccCHHHHHHHHHHhccchHhh
Confidence 12 2345678999999999876554443333433322 47899999999997532 1122222111 11 1
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+..+++++||++|.|+++|+++|....
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 1234699999999999999999998754
No 190
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=1.1e-16 Score=166.77 Aligned_cols=159 Identities=16% Similarity=0.219 Sum_probs=102.9
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcce--------eecC------CCCceeeEEEEEEec-----CCccEEEEeCCCccc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVA--------AVSR------KTNTTTHEVLGVMTK-----ADTQICIFDTPGLML 199 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~--------~~~~------~~~tt~~~~~~~~~~-----~~~~i~l~DtpG~~~ 199 (424)
..+++++|++|+|||||+++|+..... ...+ ..+.|.......+.+ ....+.||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 468999999999999999999863211 0111 124444332222222 236789999999875
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~ 279 (424)
+. ..+. ..+..+|++++|+|++++.+............ .+.|+++|+||+|+.... ....
T Consensus 83 F~---------~~v~---~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~------~~ipiIiViNKiDl~~~~--~~~~ 142 (595)
T TIGR01393 83 FS---------YEVS---RSLAACEGALLLVDAAQGIEAQTLANVYLALE------NDLEIIPVINKIDLPSAD--PERV 142 (595)
T ss_pred HH---------HHHH---HHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH------cCCCEEEEEECcCCCccC--HHHH
Confidence 41 1222 34667899999999987655443322222221 147899999999996532 2222
Q ss_pred HHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 280 AEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 280 ~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
.+++.+..+. ..++++||++|.|+++|+++|.+.++..
T Consensus 143 ~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 143 KKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 3333333333 2589999999999999999999988643
No 191
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.71 E-value=7.2e-17 Score=151.12 Aligned_cols=171 Identities=24% Similarity=0.340 Sum_probs=122.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
--|++||.||+|||||++++...+. .+.+++.||..+..+++.. .+..+++-|.||+.+..+. -...-.+.+.
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~-----G~GLG~~FLr 233 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASE-----GVGLGLRFLR 233 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCccccccccc-----CCCccHHHHH
Confidence 4589999999999999999987765 4899999999999998775 5566999999999875421 0111223345
Q ss_pred hcccccEEEEEEeCCCCCC-CchHH---HHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 219 AVNLFEVLMVVFDVHRHLT-SPDSR---VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~-~~~~~---~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+..+.++++|+|++..-. .+... +..-|+.+.. ...++|.++|+||+|+....+......+.+.+..+....++
T Consensus 234 HIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~-~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 234 HIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP-KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred HHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH-HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 5677899999999974321 12222 3333333322 12247899999999977766667776777766555443334
Q ss_pred EecCCCcChHHHHHHHHHhccCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
|||.++.|+++|...+.+.+...
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999998887543
No 192
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.71 E-value=2.6e-16 Score=139.74 Aligned_cols=158 Identities=16% Similarity=0.165 Sum_probs=104.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|..||||||++++|.......+.+..+ .....+...+..+.+||.+|....... .
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g----~~~~~i~~~~~~~~~~d~gG~~~~~~~---------w--- 75 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIG----FNIEEIKYKGYSLTIWDLGGQESFRPL---------W--- 75 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESS----EEEEEEEETTEEEEEEEESSSGGGGGG---------G---
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccc----cccceeeeCcEEEEEEecccccccccc---------c---
Confidence 568999999999999999999999776554332222 223335568889999999997543210 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCC--CCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLP--GYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~--~~~~ 291 (424)
...+..+|+++||+|+++.. ........+..+- .....+.|+++++||+|+.+.. ...+....+ .... ....
T Consensus 76 ~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-~~~~i~~~l~l~~l~~~~~~~ 152 (175)
T PF00025_consen 76 KSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-SEEEIKEYLGLEKLKNKRPWS 152 (175)
T ss_dssp GGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-THHHHHHHTTGGGTTSSSCEE
T ss_pred eeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcc-hhhHHHhhhhhhhcccCCceE
Confidence 12356789999999997532 2222233333322 1222358999999999987642 222222222 2221 1225
Q ss_pred EEEEecCCCcChHHHHHHHHHh
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
++.|||.+|+|+.+.++||.+.
T Consensus 153 v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 153 VFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHhc
Confidence 8999999999999999999875
No 193
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=7.5e-17 Score=152.51 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=103.7
Q ss_pred EEEEEecCCCChhHHHHhHhCC-----cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~-----~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 203 (424)
+|+++|++|+|||||+++|+.. +...+. ...++|.+.....+.+.+.++.++||||+..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 4899999999999999999731 111111 23356666666667788999999999997543
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ 282 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~ 282 (424)
.......+..+|++++|+|+..+.......+...+... +.|+++++||+|+.... ....+.++.
T Consensus 78 ---------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~------~~p~ivviNK~D~~~a~~~~~~~~l~~ 142 (270)
T cd01886 78 ---------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY------NVPRIAFVNKMDRTGADFFRVVEQIRE 142 (270)
T ss_pred ---------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCCCHHHHHHHHHH
Confidence 22344566778999999999887665555555555543 37899999999997532 233333444
Q ss_pred HhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
......++.++|+|+..+ +..+.+.+...+
T Consensus 143 ~l~~~~~~~~~Pisa~~~--f~g~vd~~~~~a 172 (270)
T cd01886 143 KLGANPVPLQLPIGEEDD--FRGVVDLIEMKA 172 (270)
T ss_pred HhCCCceEEEeccccCCC--ceEEEEccccEE
Confidence 444445667899999743 344444444444
No 194
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=1.9e-16 Score=145.74 Aligned_cols=153 Identities=17% Similarity=0.270 Sum_probs=100.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecC-------------CCCcee------------------------eEEEEEEe
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSR-------------KTNTTT------------------------HEVLGVMT 183 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~-------------~~~tt~------------------------~~~~~~~~ 183 (424)
+|+++|+.++|||||+++|....+..-.. ..+.|. ......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 48899999999999999998533211000 001110 00012233
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (424)
..+..+.++||||+..+ .+.+...+ ..+|++++|+|+..+....+..+..++...+ .|++
T Consensus 81 ~~~~~i~liDtpG~~~~------------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~------ip~i 142 (224)
T cd04165 81 KSSKLVTFIDLAGHERY------------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALN------IPVF 142 (224)
T ss_pred eCCcEEEEEECCCcHHH------------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEE
Confidence 45677999999997532 22223333 3689999999998877776667777777654 7899
Q ss_pred EEEecCCCCCChhhHHHHHHHHhcC----------------------------CCCCeEEEEecCCCcChHHHHHHHHH
Q 014461 262 LCMNKVDLVTKKKDLLKVAEQFKHL----------------------------PGYERIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 262 lV~NK~Dl~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
+|+||+|+.+. .......+.+.+. ....++|++||.+|.|+++|.++|..
T Consensus 143 vvvNK~D~~~~-~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 143 VVVTKIDLAPA-NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEEECccccCH-HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 99999998753 2333333332211 12337999999999999999988754
No 195
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.70 E-value=4.6e-16 Score=162.48 Aligned_cols=157 Identities=15% Similarity=0.268 Sum_probs=108.5
Q ss_pred EEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
-|+++|++++|||||+++|+|..... .....+.|.+.....+.. ++..+.+|||||+..+ ...+.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f------------i~~m~ 69 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF------------LSNML 69 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH------------HHHHH
Confidence 48999999999999999999754321 223346666554433432 4567899999997432 34455
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHHH---HHHHHhcCCC--CCe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLK---VAEQFKHLPG--YER 291 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~~---~~~~~~~~~~--~~~ 291 (424)
..+..+|++++|+|++.+..........++...+ .| +++|+||+|+.+. ..... .+..+....+ ..+
T Consensus 70 ~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lg------i~~iIVVlNKiDlv~~-~~~~~v~~ei~~~l~~~~~~~~~ 142 (614)
T PRK10512 70 AGVGGIDHALLVVACDDGVMAQTREHLAILQLTG------NPMLTVALTKADRVDE-ARIAEVRRQVKAVLREYGFAEAK 142 (614)
T ss_pred HHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEECCccCCH-HHHHHHHHHHHHHHHhcCCCCCc
Confidence 6678899999999998776666555666665543 34 5799999999763 22222 2222222222 246
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+|++||++|.|+++|+++|.+....
T Consensus 143 ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 143 LFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 9999999999999999999876543
No 196
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=3.7e-16 Score=143.46 Aligned_cols=165 Identities=13% Similarity=0.120 Sum_probs=102.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|++|||||||+++++.+.+.. .....+............+...+.+|||+|...+.. +.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~----------~~- 75 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGG----------LR- 75 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhh----------hh-
Confidence 456899999999999999998776544321 111112222111111233446788999999754311 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++++|+|.++..+ ...+..|+..+.... .+.|+++|+||+|+.... ...+.. .+....+. .++++
T Consensus 76 -~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~~-~~~~~~-~~~~~~~~-~~~e~ 148 (215)
T PTZ00132 76 -DGYYIKGQCAIIMFDVTSRIT--YKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDRQ-VKARQI-TFHRKKNL-QYYDI 148 (215)
T ss_pred -HHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhC-CCCCEEEEEECccCcccc-CCHHHH-HHHHHcCC-EEEEE
Confidence 123456899999999975432 223334444433221 357899999999986532 111222 23333344 48999
Q ss_pred ecCCCcChHHHHHHHHHhccCCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
||++|.|+++++.+|.+.+...+.
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999998876553
No 197
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.9e-16 Score=129.97 Aligned_cols=163 Identities=15% Similarity=0.166 Sum_probs=117.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
..++.++|.+.+|||||+-+.++..+... -...|...............++.+|||.|....+ .-+-
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryr------------tiTT 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYR------------TITT 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhh------------HHHH
Confidence 45899999999999999999998765310 0000111010000111234568899999986531 1123
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+++++++|+++|.++ .+....+.+|+..+......+.|+|+|+||||+..++....+....+.+..|+. +|+.||
T Consensus 89 ayyRgamgfiLmyDitN--eeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfe-fFEtSa 165 (193)
T KOG0093|consen 89 AYYRGAMGFILMYDITN--EESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFE-FFETSA 165 (193)
T ss_pred HHhhccceEEEEEecCC--HHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChH-Hhhhcc
Confidence 45788999999999975 334456677877777666778999999999999887666666777788888996 999999
Q ss_pred CCCcChHHHHHHHHHhccC
Q 014461 298 LKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~ 316 (424)
|.+.|+.++|+.+...+..
T Consensus 166 K~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICD 184 (193)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 198
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.70 E-value=1.6e-16 Score=146.35 Aligned_cols=147 Identities=21% Similarity=0.263 Sum_probs=95.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcc------------------------------eeecCCCCceeeEEEEEEecCCccEE
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKADTQIC 190 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~~~i~ 190 (424)
+|+++|++++|||||+.+|+...- .......++|++.....+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963110 00112346777777777778899999
Q ss_pred EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
+|||||+..+ .......+..+|++++|+|++++ ...............+ ..|+++|
T Consensus 81 liDtpG~~~~------------~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~iiiv 143 (219)
T cd01883 81 ILDAPGHRDF------------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLG-----VKQLIVA 143 (219)
T ss_pred EEECCChHHH------------HHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcC-----CCeEEEE
Confidence 9999997532 22334456779999999999863 1112222223333222 2578999
Q ss_pred EecCCCCCC---hhhHHHHHHHH---hcCCCC----CeEEEEecCCCcChH
Q 014461 264 MNKVDLVTK---KKDLLKVAEQF---KHLPGY----ERIFMTSGLKGAGLK 304 (424)
Q Consensus 264 ~NK~Dl~~~---~~~~~~~~~~~---~~~~~~----~~~~~iSA~~g~gi~ 304 (424)
+||+|+... ........+.+ ....++ .++++|||++|.|++
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 999999732 22222223222 222222 359999999999998
No 199
>PRK12736 elongation factor Tu; Reviewed
Probab=99.69 E-value=4.3e-16 Score=155.56 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=111.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcc----------e-----eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKV----------A-----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~----------~-----~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
..+..+|+++|+.++|||||+++|++... . ......++|.+.....+..++.++.++||||+.++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34578999999999999999999986210 0 01124466776655555566778999999996532
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~--- 276 (424)
+......+..+|++++|+|+..+........+.++...+ .| +|+++||+|+....+..
T Consensus 89 ------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g------~~~~IvviNK~D~~~~~~~~~~i 150 (394)
T PRK12736 89 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG------VPYLVVFLNKVDLVDDEELLELV 150 (394)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCEEEEEEEecCCcchHHHHHHH
Confidence 334455567889999999998776666556666665543 56 67899999997532211
Q ss_pred HHHHHHHhcCCCC----CeEEEEecCCCc--------ChHHHHHHHHHhcc
Q 014461 277 LKVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQAV 315 (424)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~iSA~~g~--------gi~~L~~~i~~~l~ 315 (424)
.+.+..+....++ .+++++||++|. ++++|++.|.+.++
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 1122233222332 369999999983 68899999988875
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.69 E-value=3.2e-16 Score=162.20 Aligned_cols=156 Identities=18% Similarity=0.285 Sum_probs=98.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEe------------------cCCccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMT------------------KADTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~------------------~~~~~i~l~DtpG~~ 198 (424)
+++.|+++|++|+|||||+|+|++..+. ...++ +|.+.-...+. ....++.+|||||+.
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 4678999999999999999999987653 22222 33321111110 011248899999975
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh----
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---- 274 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---- 274 (424)
.+. .+. ...+..+|++++|+|++++..........++... +.|+++++||+|+.....
T Consensus 81 ~f~---------~l~---~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~------~vpiIVv~NK~Dl~~~~~~~~~ 142 (590)
T TIGR00491 81 AFT---------NLR---KRGGALADLAILIVDINEGFKPQTQEALNILRMY------KTPFVVAANKIDRIPGWRSHEG 142 (590)
T ss_pred hHH---------HHH---HHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc------CCCEEEEEECCCccchhhhccC
Confidence 431 111 1245678999999999876655544444444432 478999999999964210
Q ss_pred ------------hH--------HHHHHHHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 275 ------------DL--------LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 275 ------------~~--------~~~~~~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.. ......+. +..+..+++++||++|+|+++|.++|...
T Consensus 143 ~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 143 RPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred chHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00 00011112 12233479999999999999999988643
No 201
>CHL00071 tufA elongation factor Tu
Probab=99.69 E-value=3.4e-16 Score=157.11 Aligned_cols=148 Identities=18% Similarity=0.177 Sum_probs=101.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
....+|+++|++|+|||||+|+|++.... ......++|.+.....+..++.++.|+||||+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH--
Confidence 45689999999999999999999864211 1122356676665555666778899999999642
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---H
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL---L 277 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~---~ 277 (424)
.+..++..+..+|++++|+|+..+....+......+...+ .| +|+++||+|+....... .
T Consensus 88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g------~~~iIvvvNK~D~~~~~~~~~~~~ 151 (409)
T CHL00071 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG------VPNIVVFLNKEDQVDDEELLELVE 151 (409)
T ss_pred ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEccCCCCHHHHHHHHH
Confidence 2445556677899999999998777666656666665543 66 77899999998643211 1
Q ss_pred HHHHHHhcCCCC----CeEEEEecCCCcC
Q 014461 278 KVAEQFKHLPGY----ERIFMTSGLKGAG 302 (424)
Q Consensus 278 ~~~~~~~~~~~~----~~~~~iSA~~g~g 302 (424)
+.+..+....++ .+++++||.+|.+
T Consensus 152 ~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 152 LEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 122222222222 4699999999874
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.69 E-value=6.2e-16 Score=143.73 Aligned_cols=113 Identities=20% Similarity=0.363 Sum_probs=77.9
Q ss_pred EEEEEecCCCChhHHHHhHhCCcce-----eec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~-----~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 203 (424)
+|+++|++|+|||||+++|+..... .+. ...+.|.......+.+.+.++.+|||||+..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f--- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDF--- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccch---
Confidence 4899999999999999999853211 111 11123333344456678889999999998653
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
.......++.+|++++|+|++++.......+...+... +.|+++++||+|+..
T Consensus 78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~------~~P~iivvNK~D~~~ 130 (237)
T cd04168 78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL------NIPTIIFVNKIDRAG 130 (237)
T ss_pred ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECccccC
Confidence 12233456778999999999877654444555555443 378999999999875
No 203
>PRK12735 elongation factor Tu; Reviewed
Probab=99.68 E-value=7.3e-16 Score=154.03 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=109.4
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCC-------cce--------eecCCCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT-------KVA--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~-------~~~--------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
......+|+++|++++|||||+++|++. ... ......+.|.+.....+..++.++.|+||||+..
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456789999999999999999999862 110 0112346666665555666778899999999742
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEEecCCCCCChhh---
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKD--- 275 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~NK~Dl~~~~~~--- 275 (424)
.+..++..+..+|++++|+|+..+........+..+... +.|.+ +++||+|+....+.
T Consensus 88 ------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~------gi~~iivvvNK~Dl~~~~~~~~~ 149 (396)
T PRK12735 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFLNKCDMVDDEELLEL 149 (396)
T ss_pred ------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEEEecCCcchHHHHHH
Confidence 244555667789999999999876655544444555443 25655 67999999753221
Q ss_pred HHHHHHHHhcCCCC----CeEEEEecCCCc----------ChHHHHHHHHHhcc
Q 014461 276 LLKVAEQFKHLPGY----ERIFMTSGLKGA----------GLKALTQYLMEQAV 315 (424)
Q Consensus 276 ~~~~~~~~~~~~~~----~~~~~iSA~~g~----------gi~~L~~~i~~~l~ 315 (424)
+...+..+....++ .+++++||++|. ++.+|++.|.+.++
T Consensus 150 ~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 11123333333332 468999999984 67888888887664
No 204
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.68 E-value=5e-16 Score=161.95 Aligned_cols=160 Identities=17% Similarity=0.231 Sum_probs=103.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcce--------eec------CCCCceeeEEEEEEe-----cCCccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA--------AVS------RKTNTTTHEVLGVMT-----KADTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~--------~~~------~~~~tt~~~~~~~~~-----~~~~~i~l~DtpG~~ 198 (424)
+..+++++|+.++|||||+++|+...-. ... ...+.|.......+. ..+..+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4568999999999999999999752110 011 112333332222222 225679999999987
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 278 (424)
++. ..+. ..+..+|++++|+|++++..........++... +.|+++|+||+|+.... ...
T Consensus 86 dF~---------~~v~---~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~------~lpiIvViNKiDl~~a~--~~~ 145 (600)
T PRK05433 86 DFS---------YEVS---RSLAACEGALLVVDASQGVEAQTLANVYLALEN------DLEIIPVLNKIDLPAAD--PER 145 (600)
T ss_pred HHH---------HHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEEECCCCCccc--HHH
Confidence 541 2223 335678999999999876654433222222221 47899999999986532 222
Q ss_pred HHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 279 ~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..+.+.+..+.. .++++||++|.|+++|+++|.+.++..
T Consensus 146 v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 146 VKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 233343333332 489999999999999999999988643
No 205
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.68 E-value=4.4e-16 Score=137.30 Aligned_cols=143 Identities=22% Similarity=0.302 Sum_probs=92.5
Q ss_pred cEEEEeCCCCccCCC---------------------CCCCCCCCccChhhHHHHHHhcCCeEEEeeccccccchhhhHH-
Q 014461 47 DSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEE- 104 (424)
Q Consensus 47 d~vie~~dar~p~~~---------------------~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l~~~~- 104 (424)
|+++++.|+|.|+.+ .||+||++++....|..+|.+....+.|.++.......+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 567777777766554 3366999999999999999999888888777443322221000
Q ss_pred -------HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE
Q 014461 105 -------EEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE 177 (424)
Q Consensus 105 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~ 177 (424)
........+....+...++... .+.......+++++|.||+|||||+|+|.+.+.+.++..+++|+..
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~ 155 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYS-----RNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM 155 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHh-----hccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce
Confidence 0000000000111111111100 1122344589999999999999999999999998899999999976
Q ss_pred EEEEEecCCccEEEEeCCCc
Q 014461 178 VLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 178 ~~~~~~~~~~~i~l~DtpG~ 197 (424)
..... +.++.++||||+
T Consensus 156 ~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 156 QEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred EEEEe---CCCEEEEECcCC
Confidence 65433 357899999995
No 206
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=129.90 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=114.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee--EEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH--EVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~--~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
++.+|+|.||+|||+|+-++....+. ....+|.. .....+.. +...+.+|||.|...+. .+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs---~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFr---------tits- 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFS---GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFR---------TITS- 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccc---cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHH---------HHHH-
Confidence 34679999999999999999877553 22222222 12222333 34568899999976431 1111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..++..+++++|+|+++ .++...+..||++...+.. ..|-++|+||.|..+.+....+....|....+.. .|++
T Consensus 76 --tyyrgthgv~vVYDVTn--~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie-~FET 149 (198)
T KOG0079|consen 76 --TYYRGTHGVIVVYDVTN--GESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIE-LFET 149 (198)
T ss_pred --HHccCCceEEEEEECcc--hhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCch-heeh
Confidence 23567899999999976 3445678899999876654 5899999999999887666666677777777776 9999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||+...|++..|.-|.++.
T Consensus 150 SaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQV 168 (198)
T ss_pred hhhhcccchHHHHHHHHHH
Confidence 9999999999999988765
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=1.1e-15 Score=153.26 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=100.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEE--------------------Eec------CCcc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGV--------------------MTK------ADTQ 188 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~--------------------~~~------~~~~ 188 (424)
+...+|+++|++++|||||+++|.+..... .....+.|....... +.. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 346889999999999999999997642210 010112221111000 001 1357
Q ss_pred EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~ 267 (424)
+.+|||||+..+ ....+..+..+|++++|+|++++. .......+..+...+ ..|+++|+||+
T Consensus 82 i~liDtPGh~~f------------~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g-----i~~iIVvvNK~ 144 (406)
T TIGR03680 82 VSFVDAPGHETL------------MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG-----IKNIVIVQNKI 144 (406)
T ss_pred EEEEECCCHHHH------------HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC-----CCeEEEEEEcc
Confidence 899999997532 233444556789999999998765 333334444444332 24689999999
Q ss_pred CCCCChhh--HHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 268 DLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 268 Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
|+...... ..+.+..+.... ...+++++||++|.|+++|+++|...++.
T Consensus 145 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 145 DLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred ccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 99864211 111222222211 12359999999999999999999987753
No 208
>PLN03127 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.2e-15 Score=153.95 Aligned_cols=160 Identities=20% Similarity=0.241 Sum_probs=109.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC------cce---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
....+|+++|+.++|||||+++|.+. ... ......++|.+.....+..++.++.|+||||+..+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f- 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY- 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch-
Confidence 45789999999999999999999732 111 11223677887766667777889999999998532
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHHHH-
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLLKV- 279 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~- 279 (424)
+......+..+|++++|+|+..+....+.....++...+ .| +|+++||+|+.+... ..+.
T Consensus 138 -----------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g------ip~iIvviNKiDlv~~~~-~~~~i 199 (447)
T PLN03127 138 -----------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG------VPSLVVFLNKVDVVDDEE-LLELV 199 (447)
T ss_pred -----------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEEEeeccCCHHH-HHHHH
Confidence 333344556789999999998776666666666666553 67 578999999986322 2222
Q ss_pred ---HHHHhcCCCC----CeEEEEecC---CCcC-------hHHHHHHHHHhcc
Q 014461 280 ---AEQFKHLPGY----ERIFMTSGL---KGAG-------LKALTQYLMEQAV 315 (424)
Q Consensus 280 ---~~~~~~~~~~----~~~~~iSA~---~g~g-------i~~L~~~i~~~l~ 315 (424)
+..+....++ .+++++||. +|.| +.+|+++|.+.++
T Consensus 200 ~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 200 EMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 2222222222 358888876 4555 7889999888775
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.67 E-value=1.4e-15 Score=153.67 Aligned_cols=153 Identities=16% Similarity=0.219 Sum_probs=100.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--ce----------------------------eecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------------~~~~~~~tt~~~~~~~~~~~~ 186 (424)
....+|+++|+.++|||||+++|+... +. ......++|.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 356889999999999999999998411 10 011233677777666677788
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC---CchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT---SPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~---~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
..+.+|||||+..+ .......+..+|++++|+|++++.. ........++...+ ..|+++|
T Consensus 85 ~~i~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVv 147 (426)
T TIGR00483 85 YEVTIVDCPGHRDF------------IKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVA 147 (426)
T ss_pred eEEEEEECCCHHHH------------HHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEE
Confidence 89999999996432 3334445678999999999987622 22222222233322 2468999
Q ss_pred EecCCCCCC-hhhH---HHHHHHHhcCCCC----CeEEEEecCCCcChHHH
Q 014461 264 MNKVDLVTK-KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 264 ~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L 306 (424)
+||+|+... .... .+.++.+.+..++ .+++++||++|.|++++
T Consensus 148 iNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~ 198 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK 198 (426)
T ss_pred EEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence 999999752 2222 2233333333332 36999999999999863
No 210
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=1.3e-15 Score=152.09 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=111.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
.....+|+++|+.++|||||+++|++.... ......++|.+.....+..++.++.|+||||+..
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~- 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-
Confidence 356789999999999999999999862110 0112456777766555666778899999999742
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~NK~Dl~~~~~~~--- 276 (424)
.+..+...+..+|++++|+|+..+....+.....++...+ .|.+ +++||+|+.......
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g------~p~iiVvvNK~D~~~~~~~~~~~ 150 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV 150 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC------CCEEEEEEeecCCcchHHHHHHH
Confidence 2444556678899999999998776666556666666543 6765 689999997532212
Q ss_pred HHHHHHHhcCCCC----CeEEEEecCCCc----------ChHHHHHHHHHhcc
Q 014461 277 LKVAEQFKHLPGY----ERIFMTSGLKGA----------GLKALTQYLMEQAV 315 (424)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~iSA~~g~----------gi~~L~~~i~~~l~ 315 (424)
...+..+....++ .+++++||++|. |+..|+++|.+.++
T Consensus 151 ~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 151 EMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 1122222222222 468999999875 57788888887654
No 211
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.2e-15 Score=125.98 Aligned_cols=159 Identities=18% Similarity=0.205 Sum_probs=115.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
-++++++|+.|.|||.|+..++..++..- +...+.... ..++.. ...++.+|||.|+..++ .-
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFg--SrIinVGgK~vKLQIWDTAGQErFR------------SV 74 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFG--SRIVNVGGKTVKLQIWDTAGQERFR------------SV 74 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeec--ceeeeecCcEEEEEEeecccHHHHH------------HH
Confidence 36899999999999999999998776421 111121111 112222 34468899999986542 12
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
+..+++.+-..++|+|++. .+....+..||........+++-+++++||.|+...++........|+...... +.++
T Consensus 75 tRsYYRGAAGAlLVYD~Ts--rdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~-flET 151 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITS--RDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLET 151 (214)
T ss_pred HHHHhccccceEEEEeccc--hhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhccccee-eeee
Confidence 3356788899999999975 344456778888888777777888999999999887776666677787776664 8999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|+|+++.|-.....+
T Consensus 152 Sa~TGeNVEEaFl~c~~tI 170 (214)
T KOG0086|consen 152 SALTGENVEEAFLKCARTI 170 (214)
T ss_pred cccccccHHHHHHHHHHHH
Confidence 9999999999886655443
No 212
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.66 E-value=1.5e-15 Score=129.22 Aligned_cols=152 Identities=19% Similarity=0.200 Sum_probs=92.4
Q ss_pred EEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461 144 IIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (424)
Q Consensus 144 vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (424)
++|++|+|||||+|++.+..... .....+.......... ..+..+.+|||||..... ........
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------------~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFR------------SLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHH------------hHHHHHhc
Confidence 57999999999999999876521 1111111111111122 235679999999976431 11133457
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHH-HHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-HHHHhcCCCCCeEEEEecCC
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-AEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~-l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~iSA~~ 299 (424)
.+|++++|+|++....... ...+ ..........+.|+++|+||+|+.......... ...... ....+++++|+.+
T Consensus 68 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~ 144 (157)
T cd00882 68 GADGIILVYDVTDRESFEN--VKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK-ELGVPYFETSAKT 144 (157)
T ss_pred CCCEEEEEEECcCHHHHHH--HHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh-hcCCcEEEEecCC
Confidence 7899999999975322221 1111 111111223358999999999997643222211 222222 2334699999999
Q ss_pred CcChHHHHHHHH
Q 014461 300 GAGLKALTQYLM 311 (424)
Q Consensus 300 g~gi~~L~~~i~ 311 (424)
|.|+++++++|.
T Consensus 145 ~~~i~~~~~~l~ 156 (157)
T cd00882 145 GENVEELFEELA 156 (157)
T ss_pred CCChHHHHHHHh
Confidence 999999999885
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.65 E-value=1.6e-15 Score=157.73 Aligned_cols=159 Identities=18% Similarity=0.241 Sum_probs=108.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCc--cee---e----------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTK--VAA---V----------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGY 204 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~--~~~---~----------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~ 204 (424)
.+|+++|+.++|||||+++|+... +.. + ....+.|.......+.+.+..+.+|||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 479999999999999999998521 110 1 112245555555557788899999999998643
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHH
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQ 282 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~ 282 (424)
.......+..+|++++|+|++.+.......++..+... +.|+++|+||+|+...+. ...+..+.
T Consensus 78 --------~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~------~ip~IVviNKiD~~~a~~~~v~~ei~~l 143 (594)
T TIGR01394 78 --------GGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL------GLKPIVVINKIDRPSARPDEVVDEVFDL 143 (594)
T ss_pred --------HHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC------CCCEEEEEECCCCCCcCHHHHHHHHHHH
Confidence 11223445678999999999876544444455544443 378999999999965321 22222222
Q ss_pred Hhc------CCCCCeEEEEecCCCc----------ChHHHHHHHHHhccCC
Q 014461 283 FKH------LPGYERIFMTSGLKGA----------GLKALTQYLMEQAVQR 317 (424)
Q Consensus 283 ~~~------~~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~ 317 (424)
+.. ...+ +++++||++|. |++.|++.|.+.++..
T Consensus 144 ~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 144 FAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 321 1223 48999999996 8999999999998754
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.65 E-value=1.9e-15 Score=151.47 Aligned_cols=163 Identities=19% Similarity=0.277 Sum_probs=102.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEEEec---------------------C-----Ccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGVMTK---------------------A-----DTQ 188 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~~~~---------------------~-----~~~ 188 (424)
....+|+++|+.++|||||+.+|.+.... ......+.|.......... + ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999763211 0111123333221110000 0 257
Q ss_pred EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~ 267 (424)
+.+|||||...+ ...++..+..+|++++|+|++++. .......+.++...+ ..|+++|+||+
T Consensus 87 i~liDtPG~~~f------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~-----i~~iiVVlNK~ 149 (411)
T PRK04000 87 VSFVDAPGHETL------------MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG-----IKNIVIVQNKI 149 (411)
T ss_pred EEEEECCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEEee
Confidence 899999996432 334455567789999999998664 333334444444332 23689999999
Q ss_pred CCCCChhh--HHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 268 DLVTKKKD--LLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 268 Dl~~~~~~--~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
|+.+.... ..+....+.... ...+++++||++|.|+++|+++|.+.++.
T Consensus 150 Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 99764221 112222222211 12369999999999999999999987753
No 215
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=127.81 Aligned_cols=161 Identities=19% Similarity=0.230 Sum_probs=117.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE---EEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---GVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~---~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
..++..++|.+-||||+|+..++.++++..++.. ...+-.. ..-.....++.+|||.|+..+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdpt-vgvdffarlie~~pg~riklqlwdtagqerfrs------------ 73 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPT-VGVDFFARLIELRPGYRIKLQLWDTAGQERFRS------------ 73 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCc-cchHHHHHHHhcCCCcEEEEEEeeccchHHHHH------------
Confidence 3578999999999999999999999888666432 1111100 00112234578999999875521
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCc-EEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQK-RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
-+.++++++-.+++|+|.+++ ...+.+..|+++...... |..+ +.+|+.|+|+...++...+..+.+....+.. +
T Consensus 74 itksyyrnsvgvllvyditnr--~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~-F 150 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNR--ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMA-F 150 (213)
T ss_pred HHHHHhhcccceEEEEeccch--hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCce-E
Confidence 233456777899999999863 345567788887654433 4444 4579999999988888888889999888886 9
Q ss_pred EEEecCCCcChHHHHHHHHHhc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l 314 (424)
+++||++|.|+++.++.|.+.+
T Consensus 151 VETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 151 VETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred EEecccCCCcHHHHHHHHHHHH
Confidence 9999999999999998877654
No 216
>PRK10218 GTP-binding protein; Provisional
Probab=99.65 E-value=2.7e-15 Score=155.80 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=109.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC--ccee-------------ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAA-------------VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~--~~~~-------------~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
...+|+++|+.++|||||+++|+.. .+.. .....+.|.......+.+.+..+.+|||||+.++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG- 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence 3578999999999999999999862 1111 01123455555555567788999999999986542
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHH
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA 280 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~ 280 (424)
. .....+..+|++++|+|++++.......++..+... +.|.++|+||+|+.... ..+.+..
T Consensus 83 --------~---~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~------gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 83 --------G---EVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY------GLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred --------H---HHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc------CCCEEEEEECcCCCCCchhHHHHHHH
Confidence 1 122346778999999999876555444444444443 37889999999987532 2222333
Q ss_pred HHHhcC------CCCCeEEEEecCCCc----------ChHHHHHHHHHhccCC
Q 014461 281 EQFKHL------PGYERIFMTSGLKGA----------GLKALTQYLMEQAVQR 317 (424)
Q Consensus 281 ~~~~~~------~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~ 317 (424)
+.+... ..+ +++++||++|. |+..|++.|.+.++..
T Consensus 146 ~l~~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 146 DLFVNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHhccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 333221 122 48999999998 6899999999998754
No 217
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.65 E-value=1.5e-16 Score=132.07 Aligned_cols=162 Identities=17% Similarity=0.173 Sum_probs=118.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--EEE--EEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE--VLG--VMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~--~~~--~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
.-.++++++|..-||||||+-+++..++.. ..-+|... ... .+.....++.+|||.|+..+...-+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~---kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP------- 80 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNC---KHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP------- 80 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcch---hhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-------
Confidence 346899999999999999999998776531 11111100 001 1223345689999999876532111
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
-+++.++.+++|+|.++ .+....+..|+.++.......+-+++|+||+|+.+.++...+..+.+.+..+.. +
T Consensus 81 -----IYYRgSnGalLVyDITD--rdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~-y 152 (218)
T KOG0088|consen 81 -----IYYRGSNGALLVYDITD--RDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGAL-Y 152 (218)
T ss_pred -----eEEeCCCceEEEEeccc--hHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchh-h
Confidence 24678899999999986 345567888888876655555778999999999887777777778888777776 9
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||+.+.||.++|+.|...+.+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~MiE 176 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKMIE 176 (218)
T ss_pred eecccccccCHHHHHHHHHHHHHH
Confidence 999999999999999999877654
No 218
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.64 E-value=6.2e-15 Score=142.19 Aligned_cols=186 Identities=18% Similarity=0.247 Sum_probs=116.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------------------e-EEEE---------
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------------------H-EVLG--------- 180 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------------------~-~~~~--------- 180 (424)
..+...|+|.|.||+|||||++.|.. .++..+...+.+.. . ....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 45678999999999999999998752 23332222221110 0 0000
Q ss_pred ----------EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh
Q 014461 181 ----------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM 250 (424)
Q Consensus 181 ----------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~ 250 (424)
.+...+..++|+||+|...... . ....+|++++|.+... .........-+-+
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~-----~----------i~~~aD~vlvv~~p~~--gd~iq~~k~gi~E- 194 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSET-----A----------VAGMVDFFLLLQLPGA--GDELQGIKKGIME- 194 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchh-----H----------HHHhCCEEEEEecCCc--hHHHHHHHhhhhh-
Confidence 0122367899999999874310 0 1345899999986421 1111111111111
Q ss_pred ccCCCCCCcEEEEEecCCCCCChhhHHHHHH----HHhcCC-----CCCeEEEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE----QFKHLP-----GYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321 (424)
Q Consensus 251 ~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----~~~~~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~ 321 (424)
...++|+||+|+.... ....... .+.... ..++++++||++|.|+++|++.|.++++ +.+
T Consensus 195 -------~aDIiVVNKaDl~~~~-~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~---~l~ 263 (332)
T PRK09435 195 -------LADLIVINKADGDNKT-AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA---ALT 263 (332)
T ss_pred -------hhheEEeehhcccchh-HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH---Hhc
Confidence 2248999999987642 1122222 222111 1246999999999999999999999875 566
Q ss_pred CCCCcch---hhHHHHHHHHHHHHHHhhcCcc
Q 014461 322 DPLTMSE---EVMKNISLEVVRERLLDHVHQE 350 (424)
Q Consensus 322 ~~~~~~~---~~~~~~~~e~ire~l~~~l~~e 350 (424)
+...+++ +..++++.+++|+++++.+...
T Consensus 264 ~sg~l~~~r~~~~~~~v~elire~l~~~~~~~ 295 (332)
T PRK09435 264 ASGEFAARRREQQVDWMWEMVEEGLLDRLFAD 295 (332)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7777777 6777788999999999988543
No 219
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.64 E-value=3.4e-15 Score=149.26 Aligned_cols=161 Identities=17% Similarity=0.203 Sum_probs=105.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC------cce---------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT------KVA---------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~------~~~---------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
..+..+|+++|+.++|||||+++|++. ... ......++|.+.....+...+.++.||||||+..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345789999999999999999999842 100 01123567777655555566778999999998542
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~~~--- 276 (424)
....+..+..+|++++|+|+..+..........++...+ .|. |+|+||+|+.+.....
T Consensus 89 ------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~~ 150 (394)
T TIGR00485 89 ------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVG------VPYIVVFLNKCDMVDDEELLELV 150 (394)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCEEEEEEEecccCCHHHHHHHH
Confidence 233344566789999999998766555555555555443 555 4689999998643222
Q ss_pred HHHHHHHhcCCCC----CeEEEEecCCCc--------ChHHHHHHHHHhc
Q 014461 277 LKVAEQFKHLPGY----ERIFMTSGLKGA--------GLKALTQYLMEQA 314 (424)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~iSA~~g~--------gi~~L~~~i~~~l 314 (424)
.+.++.+....++ .+++++||++|. ++.+|++.|.+.+
T Consensus 151 ~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 151 EMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 1223333333332 469999999885 3456666665544
No 220
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.64 E-value=2.6e-15 Score=150.45 Aligned_cols=149 Identities=18% Similarity=0.283 Sum_probs=99.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCccee--------------------------------ecCCCCceeeEEEEEEecCCc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAA--------------------------------VSRKTNTTTHEVLGVMTKADT 187 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~--------------------------------~~~~~~tt~~~~~~~~~~~~~ 187 (424)
++|+++|+.++|||||+++|+...-.. .....+.|.+.....+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997421110 001123456655556667788
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~ 267 (424)
++.|+||||+..+ .......+..+|++++|+|+..+...........+..++ ..++++|+||+
T Consensus 81 ~~~liDtPGh~~f------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~-----~~~iivviNK~ 143 (406)
T TIGR02034 81 KFIVADTPGHEQY------------TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLG-----IRHVVLAVNKM 143 (406)
T ss_pred EEEEEeCCCHHHH------------HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcC-----CCcEEEEEEec
Confidence 9999999996532 223334567889999999998877666655555555544 13588999999
Q ss_pred CCCCChh-hHHHHHHH---HhcCCCC--CeEEEEecCCCcChHH
Q 014461 268 DLVTKKK-DLLKVAEQ---FKHLPGY--ERIFMTSGLKGAGLKA 305 (424)
Q Consensus 268 Dl~~~~~-~~~~~~~~---~~~~~~~--~~~~~iSA~~g~gi~~ 305 (424)
|+..... .+....+. +....++ .+++++||++|.|+++
T Consensus 144 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 144 DLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 9975322 22222222 2233333 2599999999999986
No 221
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=7e-15 Score=134.31 Aligned_cols=172 Identities=22% Similarity=0.271 Sum_probs=118.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...+.+|.++|.+|+|||||+|+|+......++..+.++..........++..+.+|||||+.+... .+ .+....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~----~D-~~~r~~ 110 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD----KD-AEHRQL 110 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchh----hh-HHHHHH
Confidence 4567899999999999999999999877776666665555544444556778899999999986532 11 122334
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---------------hhHHHHH
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---------------KDLLKVA 280 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---------------~~~~~~~ 280 (424)
....+...|++++++|+.++.-..+..+..-+..... +.++++++|.+|...+- +.+....
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 4556777899999999987665555544443333221 36899999999986541 1111222
Q ss_pred HHHhcC-CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 281 EQFKHL-PGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 281 ~~~~~~-~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+.+.+. ....+++.+|+..+.|+++|..++...++.
T Consensus 187 ~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 187 EALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred HHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 222111 123468888999999999999999999874
No 222
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2e-15 Score=124.25 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=109.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee--eEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT--HEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~--~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
-++|+++|..|+|||.|+.++..+-++ +..+.|. +-....+. .+..++.+|||.|...+++
T Consensus 7 lfkivlvgnagvgktclvrrftqglfp---pgqgatigvdfmiktvev~gekiklqiwdtagqerfrs------------ 71 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFP---PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS------------ 71 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCC---CCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH------------
Confidence 478999999999999999999876554 2222222 22222233 3445688999999875421
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
-+.++++.++++++|+|.+-.. ...-+-+||.++........-.|+|+||+|+.+.++......++|.+... .-+++
T Consensus 72 itqsyyrsahalilvydiscqp--sfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd-myfle 148 (213)
T KOG0095|consen 72 ITQSYYRSAHALILVYDISCQP--SFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD-MYFLE 148 (213)
T ss_pred HHHHHhhhcceEEEEEecccCc--chhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh-hhhhh
Confidence 2234567789999999997432 22334466666554444445678999999998876666777777776532 23789
Q ss_pred EecCCCcChHHHHHHHHHhc
Q 014461 295 TSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l 314 (424)
+||+...|++.||..+.-.+
T Consensus 149 tsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hcccchhhHHHHHHHHHHHH
Confidence 99999999999998887655
No 223
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.64 E-value=5.4e-15 Score=150.53 Aligned_cols=154 Identities=17% Similarity=0.241 Sum_probs=102.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeec--------------------------------CCCCceeeEEEEEEe
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS--------------------------------RKTNTTTHEVLGVMT 183 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~--------------------------------~~~~tt~~~~~~~~~ 183 (424)
....++|+++|++++|||||+++|+...-.... ...+.|.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 355799999999999999999999853211100 011344555555566
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
.++.++.|+||||+..+ .......+..+|++++|+|+..+...........+..++ ..|+++|
T Consensus 104 ~~~~~i~~iDTPGh~~f------------~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg-----~~~iIvv 166 (474)
T PRK05124 104 TEKRKFIIADTPGHEQY------------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLG-----IKHLVVA 166 (474)
T ss_pred cCCcEEEEEECCCcHHH------------HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhC-----CCceEEE
Confidence 77889999999995421 223344467899999999998776655544444555443 1468999
Q ss_pred EecCCCCCChh-hHHHHHHHH---hcCCC---CCeEEEEecCCCcChHHH
Q 014461 264 MNKVDLVTKKK-DLLKVAEQF---KHLPG---YERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 264 ~NK~Dl~~~~~-~~~~~~~~~---~~~~~---~~~~~~iSA~~g~gi~~L 306 (424)
+||+|+..... .+.+..+.+ ....+ ..+++++||++|.|++++
T Consensus 167 vNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 167 VNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred EEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 99999975322 233333333 22222 346999999999999864
No 224
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=3.1e-15 Score=158.17 Aligned_cols=153 Identities=17% Similarity=0.251 Sum_probs=102.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeec----------CCC----------------------CceeeEEEEEEe
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----------RKT----------------------NTTTHEVLGVMT 183 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~----------~~~----------------------~tt~~~~~~~~~ 183 (424)
....++|+++|++|+|||||+++|+........ ... +.|.+.....+.
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 345678999999999999999999864322111 112 344445455566
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
..+.++.|+||||+..+ .......+..+|++++|+|+..+..........++..++ ..|+++|
T Consensus 101 ~~~~~~~liDtPG~~~f------------~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~-----~~~iivv 163 (632)
T PRK05506 101 TPKRKFIVADTPGHEQY------------TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLG-----IRHVVLA 163 (632)
T ss_pred cCCceEEEEECCChHHH------------HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhC-----CCeEEEE
Confidence 77889999999996432 222334567889999999998776665555555555543 2468899
Q ss_pred EecCCCCCCh-hhHHHHHHHH---hcCCCC--CeEEEEecCCCcChHH
Q 014461 264 MNKVDLVTKK-KDLLKVAEQF---KHLPGY--ERIFMTSGLKGAGLKA 305 (424)
Q Consensus 264 ~NK~Dl~~~~-~~~~~~~~~~---~~~~~~--~~~~~iSA~~g~gi~~ 305 (424)
+||+|+.... ..+.....++ ....++ .+++++||++|.|+++
T Consensus 164 vNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 9999997522 2222232232 233344 3599999999999984
No 225
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.63 E-value=1.6e-15 Score=144.08 Aligned_cols=155 Identities=17% Similarity=0.253 Sum_probs=101.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcce-----eecC------------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVA-----AVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG 203 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~-----~~~~------------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~ 203 (424)
+|+++|++|+|||||+|+|++.... .+.. ..+.+.......+.+.+.++.+|||||..++
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 4899999999999999999753211 1111 0122223333446667889999999997532
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF 283 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 283 (424)
...+...+..+|++++|+|++.+.......+...+... +.|.++|+||+|+... ........+
T Consensus 78 ---------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~------~~p~iivvNK~D~~~~--~~~~~~~~l 140 (268)
T cd04170 78 ---------VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA------GIPRIIFINKMDRERA--DFDKTLAAL 140 (268)
T ss_pred ---------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCccCCC--CHHHHHHHH
Confidence 22333456678999999999876544434444444433 3789999999998764 344455555
Q ss_pred hcCCCCC-eEEEEecCCCcChHHHHHHHHHhcc
Q 014461 284 KHLPGYE-RIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 284 ~~~~~~~-~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+...+.. -.+.++..+|.|+..+.+.+...+.
T Consensus 141 ~~~~~~~~~~~~ip~~~~~~~~~~vd~~~~~~~ 173 (268)
T cd04170 141 QEAFGRPVVPLQLPIGEGDDFKGVVDLLTEKAY 173 (268)
T ss_pred HHHhCCCeEEEEecccCCCceeEEEEcccCEEE
Confidence 5544433 1244567889999888888876654
No 226
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.63 E-value=2.2e-15 Score=133.34 Aligned_cols=152 Identities=24% Similarity=0.352 Sum_probs=109.8
Q ss_pred hHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-----------------CCCCCCCCccChhhHHHHHHhcCCeE
Q 014461 25 LFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-----------------DPQNNNAAKKQEPTWDEKYRERTDRI 87 (424)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-----------------~~k~Dl~~~~~~~~~~~~~~~~~~~i 87 (424)
||-+||.++.++... .+..+|+++.+.|++.|... .||+|+.+.+....|..++...+..+
T Consensus 1 ~~~~~~~~~~~~~~~--~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~v 78 (171)
T cd01856 1 WFPGHMAKALRQIKE--KLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKV 78 (171)
T ss_pred CCchHHHHHHHHHHH--HHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeE
Confidence 567899999998877 77889999999999876543 22669976655567888888877778
Q ss_pred EEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCccee
Q 014461 88 VFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA 166 (424)
Q Consensus 88 ~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~ 166 (424)
++.++ ++.|...+. .. +...+...... ..........+++++|.+|+|||||+|+|.+.....
T Consensus 79 i~iSa~~~~gi~~L~----------~~----l~~~l~~~~~~--~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~ 142 (171)
T cd01856 79 LFVNAKSGKGVKKLL----------KA----AKKLLKDIEKL--KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAK 142 (171)
T ss_pred EEEECCCcccHHHHH----------HH----HHHHHHHHhhh--hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCcee
Confidence 88888 777877661 11 11111110000 011223345789999999999999999999988877
Q ss_pred ecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 167 ~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~ 197 (424)
++..+++|+......+. ..+.++||||+
T Consensus 143 ~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 143 VGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred ecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 88888998876654332 56899999997
No 227
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.63 E-value=4.2e-15 Score=134.59 Aligned_cols=161 Identities=18% Similarity=0.270 Sum_probs=100.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeec----CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
++|+++|.+|+|||||+|+|++......+ ....+|..... ........+.+|||||+..... . ....++.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~l~l~DtpG~~~~~~--~---~~~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP-YPHPKFPNVTLWDLPGIGSTAF--P---PDDYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee-eecCCCCCceEEeCCCCCcccC--C---HHHHHHH
Confidence 67999999999999999999985432111 11122222111 1112235789999999875321 1 1111211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----------h-HHHHHHHH
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----------D-LLKVAEQF 283 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----------~-~~~~~~~~ 283 (424)
..+..+|++++|.|. +++..+..+.+.+...+ .|+++|+||+|+..... . +....+.+
T Consensus 76 --~~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~~------~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISST--RFSSNDVKLAKAIQCMG------KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeCC--CCCHHHHHHHHHHHHhC------CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence 225678998888553 55666667777777653 67999999999853211 1 11222222
Q ss_pred hcC-----CCCCeEEEEecC--CCcChHHHHHHHHHhccC
Q 014461 284 KHL-----PGYERIFMTSGL--KGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 284 ~~~-----~~~~~~~~iSA~--~g~gi~~L~~~i~~~l~~ 316 (424)
... ...+.+|.+|+. .+.|+..|.+.+...+++
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 211 234579999998 689999999999998864
No 228
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.62 E-value=6.4e-15 Score=132.55 Aligned_cols=161 Identities=14% Similarity=0.120 Sum_probs=112.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+..+|+++|.+|||||+|+.++++..+. ..+.+|.-+.....+ ......+.++||+|..++. . ++.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~--~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~---------~-~~~ 69 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFV--EDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS---------A-MRD 69 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccc--cccCCCccccceEEEEECCEEEEEEEEcCCCcccCh---------H-HHH
Confidence 4578999999999999999999988875 334444333333333 3334567899999955432 1 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-cCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|+.++|+++++..+.. .+..+.+.+. .......|+++|+||+|+...+....+..+.+...++.. +++
T Consensus 70 --~~~~~~~gF~lVysitd~~SF~--~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~-f~E 144 (196)
T KOG0395|consen 70 --LYIRNGDGFLLVYSITDRSSFE--EAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCA-FIE 144 (196)
T ss_pred --HhhccCcEEEEEEECCCHHHHH--HHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCc-EEE
Confidence 2356679999999998754333 2333333331 112234799999999999886666666677777777777 999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||+...+++++|..|...+.
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~~ 165 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREIR 165 (196)
T ss_pred eeccCCcCHHHHHHHHHHHHH
Confidence 999999999999999988664
No 229
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.62 E-value=1.4e-14 Score=121.49 Aligned_cols=158 Identities=18% Similarity=0.292 Sum_probs=107.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+.++|.++|..|+||||++++|.+.....+++..+.. ...+...+.++.+||..|... ++.+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~----Iktl~~~~~~L~iwDvGGq~~-------------lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ----IKTLEYKGYTLNIWDVGGQKT-------------LRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCcccee----eEEEEecceEEEEEEcCCcch-------------hHHHH
Confidence 3789999999999999999999998765555544433 333557889999999999753 33334
Q ss_pred h-hcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCC--hhhHHH--HHHHHhcCCCCC
Q 014461 218 S-AVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLK--VAEQFKHLPGYE 290 (424)
Q Consensus 218 ~-~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~--~~~~~~~~~~~~ 290 (424)
. ++..+|++|||+|.++.....+. .+.+.+.+-.. -+.|++++.||.|+... ...+.. -++.+.+....
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl---aG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~- 153 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL---AGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHW- 153 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh---cCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCc-
Confidence 3 45778999999999765433222 23333332222 23789999999999843 112221 12233222222
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++.|||.+|+++.+-++||...+..
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHHHH
Confidence 58999999999999999999887643
No 230
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.62 E-value=5.2e-15 Score=137.16 Aligned_cols=223 Identities=20% Similarity=0.261 Sum_probs=141.0
Q ss_pred CCCCccChhhHHHHHHhcCCeEEEeeccccccchhhhHHHHHHHH-HHH--HHHHHHHHHHhhHHHH-HHhhhhcccceE
Q 014461 66 NNAAKKQEPTWDEKYRERTDRIVFGEEAQKGKLRIFQEEEEERKH-RAL--AKALLQAALERQEEEE-EEVKEEDQKSVA 141 (424)
Q Consensus 66 Dl~~~~~~~~~~~~~~~~~~~i~f~~~~~~~~~~l~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 141 (424)
+++-.+....|...++..|..+ . +.|-+.+ +.+. +.+ ...-+...|++.+... .+..........
T Consensus 112 py~~~rl~r~~~hl~r~~g~~v--~---gsges~i------d~d~~rllr~kea~lrKeL~~vrrkr~~r~gr~~~s~pv 180 (410)
T KOG0410|consen 112 PYVGGRLERELQHLRRQSGGQV--K---GSGESII------DRDIRRLLRIKEAQLRKELQRVRRKRQRRVGREGESSPV 180 (410)
T ss_pred ccccchHHHHHHHHHhcCCCcc--c---CccchHh------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCce
Confidence 5566777888888888777652 1 2222222 1111 111 1223333444433222 223344556788
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
|++||++|+|||||+++|++.... ..+....|.+++... --..+..+.+.||-||... ++... ...++.+++.+
T Consensus 181 iavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd---LP~~L-vaAF~ATLeeV 255 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD---LPIQL-VAAFQATLEEV 255 (410)
T ss_pred EEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhh---CcHHH-HHHHHHHHHHH
Confidence 999999999999999999964432 233333444433322 2356778999999999865 45444 46789999999
Q ss_pred ccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCC-CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 221 NLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPK-QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~-~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
..+|++++|+|++.+.-+. .+.++..+..++....+. ..++=|-||+|..+.....+ .. ..+.+||+
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~n-~~v~isal 324 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------KN-LDVGISAL 324 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------cC-Cccccccc
Confidence 9999999999998764433 346777777776432221 23566889999866421110 11 16889999
Q ss_pred CCcChHHHHHHHHHhcc
Q 014461 299 KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~ 315 (424)
+|.|++++++.+-....
T Consensus 325 tgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVA 341 (410)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999999877663
No 231
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.62 E-value=1e-14 Score=151.59 Aligned_cols=156 Identities=21% Similarity=0.293 Sum_probs=96.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEec------------------CCccEEEEeCCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTK------------------ADTQICIFDTPGL 197 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~------------------~~~~i~l~DtpG~ 197 (424)
.+++.|+++|++|+|||||+|+|.+..+. ...+ +.|.+.-...... .-..+.||||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 46778999999999999999999876543 2222 2222211000000 0013789999998
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--- 274 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--- 274 (424)
..+. .+.. ..+..+|++++|+|++++...........+... +.|+++++||+|+.....
T Consensus 82 e~f~---------~~~~---~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~------~vpiIvviNK~D~~~~~~~~~ 143 (586)
T PRK04004 82 EAFT---------NLRK---RGGALADIAILVVDINEGFQPQTIEAINILKRR------KTPFVVAANKIDRIPGWKSTE 143 (586)
T ss_pred HHHH---------HHHH---HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc------CCCEEEEEECcCCchhhhhhc
Confidence 6441 1111 235678999999999876555444444444432 478999999999852100
Q ss_pred -----------------hH----HHHHHHHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHH
Q 014461 275 -----------------DL----LKVAEQFK-------------HLPGYERIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 275 -----------------~~----~~~~~~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
.+ .+....+. +..+..+++++||++|.|+++|++.+..
T Consensus 144 ~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 144 DAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred CchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 01111122 1123346999999999999999988754
No 232
>PLN03126 Elongation factor Tu; Provisional
Probab=99.62 E-value=1.2e-14 Score=147.55 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=99.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
.....+|+++|++++|||||+++|++.... ......+.|.+.....+...+.++.++||||+..+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 345789999999999999999999852111 11223456666555556667889999999997542
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~--- 276 (424)
+......+..+|++++|+|+..+...........+...+ .| +++++||+|+.......
T Consensus 158 ------------~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~g------i~~iIvvvNK~Dl~~~~~~~~~i 219 (478)
T PLN03126 158 ------------VKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVG------VPNMVVFLNKQDQVDDEELLELV 219 (478)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC------CCeEEEEEecccccCHHHHHHHH
Confidence 344455667889999999998776655555555555543 56 77899999998642211
Q ss_pred HHHHHHHhcCCC----CCeEEEEecCCCcC
Q 014461 277 LKVAEQFKHLPG----YERIFMTSGLKGAG 302 (424)
Q Consensus 277 ~~~~~~~~~~~~----~~~~~~iSA~~g~g 302 (424)
.+.+..+....+ ..+++++||.+|.+
T Consensus 220 ~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 220 ELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 112222322222 23689999998854
No 233
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=2.1e-15 Score=160.90 Aligned_cols=143 Identities=18% Similarity=0.198 Sum_probs=99.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcc-----eeecC------------CCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSR------------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~~~------------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
+..+|+++|++|+|||||+|+|+.... ..+.+ ..++|.......+.+.+.++.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 457899999999999999999974211 11111 2466776666677788999999999998753
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA 280 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 280 (424)
. ..+...+..+|++++|+|+.++.......+...+... +.|+++|+||+|+... ......
T Consensus 89 ~------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~p~ivviNK~D~~~~--~~~~~~ 148 (689)
T TIGR00484 89 T------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY------EVPRIAFVNKMDKTGA--NFLRVV 148 (689)
T ss_pred h------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCEEEEEECCCCCCC--CHHHHH
Confidence 1 1233456678999999999877666555555555443 3789999999999863 233334
Q ss_pred HHHhcCC---CCCeEEEEecCCC
Q 014461 281 EQFKHLP---GYERIFMTSGLKG 300 (424)
Q Consensus 281 ~~~~~~~---~~~~~~~iSA~~g 300 (424)
+.+.... .+..++|+||..+
T Consensus 149 ~~i~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 149 NQIKQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHHHHhCCCceeEEeccccCCC
Confidence 4444333 3345899999866
No 234
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.61 E-value=1.1e-16 Score=151.24 Aligned_cols=135 Identities=25% Similarity=0.291 Sum_probs=107.3
Q ss_pred CCCCCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeec--cccccc
Q 014461 42 TENDCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEE--AQKGKL 98 (424)
Q Consensus 42 ~~~~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~--~~~~~~ 98 (424)
.+..+|+||.|.|||.|..+ +. |+||++....+.|...+.+..+++.|..+ ..-|+.
T Consensus 210 ViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKg 289 (572)
T KOG2423|consen 210 VIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKG 289 (572)
T ss_pred hhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchh
Confidence 45578999999999999998 65 66999999999999999999999999888 566777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE
Q 014461 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV 178 (424)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~ 178 (424)
.+ ..+.+++-+.. ...+.+-|+|+|+||+||||+||+|...+++.+.+.+|.|..-+
T Consensus 290 al----------I~llRQf~kLh-------------~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQ 346 (572)
T KOG2423|consen 290 AL----------IQLLRQFAKLH-------------SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQ 346 (572)
T ss_pred HH----------HHHHHHHHhhc-------------cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHH
Confidence 66 33433333332 23456889999999999999999999999999999999876432
Q ss_pred EEEEecCCccEEEEeCCCcccCCC
Q 014461 179 LGVMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 179 ~~~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
.. .--..|+|||+||+.-+..
T Consensus 347 YI---tLmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 347 YI---TLMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred HH---HHHhceeEecCCCccCCCC
Confidence 11 1234689999999986643
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.1e-14 Score=143.19 Aligned_cols=162 Identities=17% Similarity=0.214 Sum_probs=111.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc--------------eeecCCCCceeeEEEEEEecCC---ccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV--------------AAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~--------------~~~~~~~~tt~~~~~~~~~~~~---~~i~l~DtpG~~~ 199 (424)
.+..+++|+.+-..|||||..+|+...- -.+....|.|.......+.+.+ +.+++|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 3567899999999999999999874111 1233344566555555444444 7799999999987
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~ 279 (424)
+.. .+.+ .+..||++|+|+|++++...+.......--+. +..+|.|+||+|+... +.+..
T Consensus 138 Fs~---------EVsR---slaac~G~lLvVDA~qGvqAQT~anf~lAfe~------~L~iIpVlNKIDlp~a--dpe~V 197 (650)
T KOG0462|consen 138 FSG---------EVSR---SLAACDGALLVVDASQGVQAQTVANFYLAFEA------GLAIIPVLNKIDLPSA--DPERV 197 (650)
T ss_pred ccc---------eehe---hhhhcCceEEEEEcCcCchHHHHHHHHHHHHc------CCeEEEeeeccCCCCC--CHHHH
Confidence 743 2333 34568999999999987665443222111122 3568999999999874 33344
Q ss_pred HHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 280 AEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 280 ~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
..++.+.+.. .+++.+|||+|.|+++++++|++.+|+..
T Consensus 198 ~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 198 ENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred HHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCC
Confidence 4444443333 26899999999999999999999997543
No 236
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=1e-14 Score=155.61 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=86.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC-----cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
+..+|+++|++|+|||||+++|+.. ....+. ...++|.+.....+.+++.++.++||||+.++
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 4678999999999999999999742 111122 24466776666667788999999999997542
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+...+..+|++++|+|+..+....+..+...+... +.|+++++||+|+...
T Consensus 87 ------------~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~------~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 ------------TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY------GVPRIVFVNKMDRIGA 140 (691)
T ss_pred ------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence 22345567778999999999887766666666665554 3789999999999753
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.59 E-value=1.8e-14 Score=147.96 Aligned_cols=117 Identities=17% Similarity=0.257 Sum_probs=78.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC--Ccc---eeec----------CC------CCceeeEEEEEEecCCccEEEEeCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVS----------RK------TNTTTHEVLGVMTKADTQICIFDTP 195 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~--~~~---~~~~----------~~------~~tt~~~~~~~~~~~~~~i~l~Dtp 195 (424)
.+..+|+++|++|+|||||+++|+. +.. ..+. +. .+.+.......+.+.+..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3567899999999999999999963 111 1111 10 0122222233466778899999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
|+.++ ...++..+..+|++++|+|++++.......+....... +.|+++++||+|+..
T Consensus 88 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~------~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDF------------SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR------DTPIFTFINKLDRDG 145 (526)
T ss_pred Cchhh------------HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc------CCCEEEEEECCcccc
Confidence 98643 12334456778999999999876644433444443332 478999999999865
No 238
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.59 E-value=2.9e-14 Score=130.79 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=72.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCC---------------CCceeeEE--EEEEec--------CCccEEEEeCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------TNTTTHEV--LGVMTK--------ADTQICIFDTP 195 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~---------------~~tt~~~~--~~~~~~--------~~~~i~l~Dtp 195 (424)
+|+++|+.++|||||+++|+.......... .+.|.... ...+.. .+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999975321100000 11221111 111221 25678999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
|+..+ ...+...+..+|++++|+|+..+.......+....... +.|+++|+||+|+.
T Consensus 82 G~~~f------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~------~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDF------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE------RVKPVLVINKIDRL 138 (222)
T ss_pred Ccccc------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECCCcc
Confidence 98754 22344556788999999999877655444444433322 36899999999986
No 239
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.58 E-value=1.5e-14 Score=132.59 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=90.5
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceee------------cC------CCCceeeEEEEEEe-----cCCccEEEEeCCCc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAV------------SR------KTNTTTHEVLGVMT-----KADTQICIFDTPGL 197 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~------------~~------~~~tt~~~~~~~~~-----~~~~~i~l~DtpG~ 197 (424)
+|+++|++|+|||||+++|++...... .+ ..+.|.......+. .....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 00 01122111111111 22357899999998
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK----- 272 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~----- 272 (424)
..+ .......+..+|++++|+|++++.......+...+.. .+.|+++|+||+|+...
T Consensus 82 ~~f------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~------~~~p~iiviNK~D~~~~~~~l~ 143 (213)
T cd04167 82 VNF------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL------EGLPIVLVINKIDRLILELKLP 143 (213)
T ss_pred cch------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEECcccCcccccCC
Confidence 643 1223345667899999999986554332222222221 13789999999998621
Q ss_pred -h---hhHHHHHHH---HhcCCC----------CCeEEEEecCCCcChH--------HHHHHHHHhcc
Q 014461 273 -K---KDLLKVAEQ---FKHLPG----------YERIFMTSGLKGAGLK--------ALTQYLMEQAV 315 (424)
Q Consensus 273 -~---~~~~~~~~~---~~~~~~----------~~~~~~iSA~~g~gi~--------~L~~~i~~~l~ 315 (424)
. ..+.+..+. +....+ ..++++.||+.|.+++ +|++.|.+.++
T Consensus 144 ~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 144 PNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 1 111112111 111111 1247788999998876 66666665543
No 240
>PRK00007 elongation factor G; Reviewed
Probab=99.58 E-value=9.4e-15 Score=155.73 Aligned_cols=150 Identities=21% Similarity=0.270 Sum_probs=106.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhC---C--cceeec------------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG---T--KVAAVS------------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~---~--~~~~~~------------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
+..+|+++|++|+|||||+|+|+. . ....+. ...++|.+.....+.+.+.++.++||||+.++
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 457999999999999999999973 1 111122 24467777766667788999999999997542
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA 280 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 280 (424)
.......+..+|++++|+|+..+....+..+...+...+ .|.++++||+|+... ......
T Consensus 89 ------------~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~------~p~iv~vNK~D~~~~--~~~~~~ 148 (693)
T PRK00007 89 ------------TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK------VPRIAFVNKMDRTGA--DFYRVV 148 (693)
T ss_pred ------------HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC------CCEEEEEECCCCCCC--CHHHHH
Confidence 123445567789999999998887777777777666653 789999999999863 344445
Q ss_pred HHHhcCCCC---CeEEEEecCCC-cChHHHH
Q 014461 281 EQFKHLPGY---ERIFMTSGLKG-AGLKALT 307 (424)
Q Consensus 281 ~~~~~~~~~---~~~~~iSA~~g-~gi~~L~ 307 (424)
+.+.+..++ ...+|+||..| .|+-+++
T Consensus 149 ~~i~~~l~~~~~~~~ipisa~~~f~g~~d~~ 179 (693)
T PRK00007 149 EQIKDRLGANPVPIQLPIGAEDDFKGVVDLV 179 (693)
T ss_pred HHHHHHhCCCeeeEEecCccCCcceEEEEcc
Confidence 555444443 45789999877 4444444
No 241
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=4.1e-14 Score=140.41 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=113.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
.+++-|+++|+-..|||||+..+.+..+. .....+.|.+.-.+.+.. ....+.|+||||+..+.. +
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va-~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~----------m 71 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTA----------M 71 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccc-cccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHH----------H
Confidence 35778999999999999999999988876 345556676665444444 346899999999865421 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-------
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL------- 286 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~------- 286 (424)
++ ....-+|++++|+|+.++...+..+....++.. +.|+++++||+|+.+. +......++.+.
T Consensus 72 -Ra-RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a------~vP~iVAiNKiDk~~~--np~~v~~el~~~gl~~E~~ 141 (509)
T COG0532 72 -RA-RGASVTDIAILVVAADDGVMPQTIEAINHAKAA------GVPIVVAINKIDKPEA--NPDKVKQELQEYGLVPEEW 141 (509)
T ss_pred -Hh-cCCccccEEEEEEEccCCcchhHHHHHHHHHHC------CCCEEEEEecccCCCC--CHHHHHHHHHHcCCCHhhc
Confidence 11 234668999999999988877665555555554 4899999999999864 333333333322
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+...++++||++|+|+++|++.|.-..
T Consensus 142 gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 142 GGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 2334689999999999999999886543
No 242
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.58 E-value=2.1e-14 Score=125.17 Aligned_cols=128 Identities=26% Similarity=0.282 Sum_probs=90.3
Q ss_pred CCCcEEEEeCCCCccCCC---------------------CCCCCCCCccChhhHHHHHHhcCCeE-EEeec-cccccchh
Q 014461 44 NDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQEPTWDEKYRERTDRI-VFGEE-AQKGKLRI 100 (424)
Q Consensus 44 ~~~d~vie~~dar~p~~~---------------------~~k~Dl~~~~~~~~~~~~~~~~~~~i-~f~~~-~~~~~~~l 100 (424)
..+|+++.+.|++.|... .||+|+.+++....|..+|.+..... +..++ ++.|...+
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L 86 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSL 86 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHH
Confidence 468888888888877543 33679988777788999998765443 44555 56666655
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG 180 (424)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~ 180 (424)
.. .+...++. ....+..+|+++|.||||||||+|+|.+.....++..+++|+.....
T Consensus 87 ----------~~----~l~~~~~~---------~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~ 143 (157)
T cd01858 87 ----------IQ----LLRQFSKL---------HSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI 143 (157)
T ss_pred ----------HH----HHHHHHhh---------hccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE
Confidence 11 11111110 01124578999999999999999999999988899999999876542
Q ss_pred EEecCCccEEEEeCCCc
Q 014461 181 VMTKADTQICIFDTPGL 197 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~ 197 (424)
. .+..+.++||||+
T Consensus 144 ~---~~~~~~liDtPGi 157 (157)
T cd01858 144 T---LMKRIYLIDCPGV 157 (157)
T ss_pred E---cCCCEEEEECcCC
Confidence 2 2345899999995
No 243
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.58 E-value=2.9e-14 Score=144.13 Aligned_cols=151 Identities=18% Similarity=0.255 Sum_probs=99.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--ce----------------------------eecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------------AVSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------------~~~~~~~tt~~~~~~~~~~~~ 186 (424)
....+|+++|+.++|||||+.+|+..- .. ......+.|.+.....+..++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 356889999999999999999987410 00 011123456665555567778
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (424)
..+.|+||||+.++ +......+..+|++++|+|++.+.. ......+.++..++ .|
T Consensus 85 ~~i~lIDtPGh~~f------------~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g------i~ 146 (446)
T PTZ00141 85 YYFTIIDAPGHRDF------------IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG------VK 146 (446)
T ss_pred eEEEEEECCChHHH------------HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC------CC
Confidence 89999999997532 4444556778999999999987642 23334445555544 44
Q ss_pred -EEEEEecCCCCC---ChhhHHHHHHHHh---cCCCC----CeEEEEecCCCcChHH
Q 014461 260 -RVLCMNKVDLVT---KKKDLLKVAEQFK---HLPGY----ERIFMTSGLKGAGLKA 305 (424)
Q Consensus 260 -~ilV~NK~Dl~~---~~~~~~~~~~~~~---~~~~~----~~~~~iSA~~g~gi~~ 305 (424)
+|+++||+|... .++.+.+..+++. ...++ .+++++||.+|.|+.+
T Consensus 147 ~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 147 QMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred eEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 678999999532 1223333333332 22233 3689999999999864
No 244
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.57 E-value=2.8e-14 Score=134.86 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=93.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCc-----ceeec----------CC------CCceeeEEEEEEecCCccEEEEeCCCcc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTK-----VAAVS----------RK------TNTTTHEVLGVMTKADTQICIFDTPGLM 198 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~-----~~~~~----------~~------~~tt~~~~~~~~~~~~~~i~l~DtpG~~ 198 (424)
.+|+++|++|+|||||+++|+... ...+. +. .+.+.......+.+.+.++.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 579999999999999999997421 11111 11 1122223333467788999999999975
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 278 (424)
++ ...++..+..+|++++|+|++.+.......+.+..... +.|+++++||+|+.... ...
T Consensus 83 df------------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~------~~P~iivvNK~D~~~a~--~~~ 142 (267)
T cd04169 83 DF------------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR------GIPIITFINKLDREGRD--PLE 142 (267)
T ss_pred HH------------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc------CCCEEEEEECCccCCCC--HHH
Confidence 43 12244556788999999999876544333444333322 47899999999987632 222
Q ss_pred HHHHHhcCCCC---CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 279 VAEQFKHLPGY---ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 279 ~~~~~~~~~~~---~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.++.+....+. +-.+|+. .|.++..+.+.+...+.
T Consensus 143 ~~~~l~~~l~~~~~~~~~Pi~--~~~~~~g~vd~~~~~a~ 180 (267)
T cd04169 143 LLDEIEEELGIDCTPLTWPIG--MGKDFKGVYDRRTGEVE 180 (267)
T ss_pred HHHHHHHHHCCCceeEEeccc--CCCceEEEEEhhhCEEE
Confidence 23333333333 2334443 34555555555555543
No 245
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.56 E-value=3.3e-14 Score=143.33 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=102.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEE---------------------------EEe----
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLG---------------------------VMT---- 183 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~---------------------------~~~---- 183 (424)
....+|+++|+-..|||||+.+|++...... +...+.|.+.-.. .+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4568999999999999999999997432110 0011111110000 000
Q ss_pred --cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcE
Q 014461 184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKR 260 (424)
Q Consensus 184 --~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (424)
.....+.|+||||+.. .++.++..+..+|++++|+|+..+ ........+..+..++ -.|+
T Consensus 112 ~~~~~~~i~~IDtPGH~~------------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg-----i~~i 174 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK-----LKHI 174 (460)
T ss_pred cccccceEeeeeCCCHHH------------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC-----CCcE
Confidence 0023689999999642 255666677889999999999864 2332233333444443 1468
Q ss_pred EEEEecCCCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 261 VLCMNKVDLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
|+|+||+|+.+. ....+..+++... ....+++++||++|.|++.|+++|.+.++.
T Consensus 175 IVvlNKiDlv~~-~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 175 IILQNKIDLVKE-AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEEecccccCH-HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999999999853 2333323333221 123469999999999999999999987754
No 246
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=1.3e-15 Score=122.96 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=108.1
Q ss_pred EEEecCCCChhHHHHhHhCCcceeecCCCCc-eeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 143 GIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-TTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 143 ~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-t~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
+++|.+++|||.|+-++..+.+.. .+...| ..+.....++.+ ..++.+|||.|+..+++ -+..+
T Consensus 1 mllgds~~gktcllir~kdgafl~-~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs------------vt~ay 67 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLA-GNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS------------VTHAY 67 (192)
T ss_pred CccccCccCceEEEEEeccCceec-CceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh------------hhHhh
Confidence 368999999999987776544321 111111 111111123333 34678999999876531 12345
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
++++|++++++|+.+..+. ..+..|+.++.........+.+++||||+...+..-.+..+.+.+.++.+ ++++||++
T Consensus 68 yrda~allllydiankasf--dn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ip-fmetsakt 144 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASF--DNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIP-FMETSAKT 144 (192)
T ss_pred hcccceeeeeeecccchhH--HHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCC-ceeccccc
Confidence 7899999999999765433 33444554443333334668899999999775544445556677777776 99999999
Q ss_pred CcChHHHHHHHHHhccCCCCCCCC
Q 014461 300 GAGLKALTQYLMEQAVQRPWSEDP 323 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~~~~~~~~~ 323 (424)
|.|++-.|-.|.+.+.......++
T Consensus 145 g~nvd~af~~ia~~l~k~~~~~~~ 168 (192)
T KOG0083|consen 145 GFNVDLAFLAIAEELKKLKMGAPP 168 (192)
T ss_pred cccHhHHHHHHHHHHHHhccCCCC
Confidence 999999999999888665544443
No 247
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.56 E-value=2.4e-14 Score=122.47 Aligned_cols=110 Identities=28% Similarity=0.440 Sum_probs=79.2
Q ss_pred CCCCcEEEEeCCCCccCCC-C--------------------CCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchh
Q 014461 43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRI 100 (424)
Q Consensus 43 ~~~~d~vie~~dar~p~~~-~--------------------~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l 100 (424)
+..+|+++.+.|++.|... + ||+|+.+++....|..++...+..+++.++ ++.
T Consensus 9 i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~----- 83 (141)
T cd01857 9 VERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN----- 83 (141)
T ss_pred HhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC-----
Confidence 3468888888898887765 2 244665554445566666555555555555 221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEE
Q 014461 101 FQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLG 180 (424)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~ 180 (424)
.+++++|.+|+|||||+|+|.+.....++..+++|++....
T Consensus 84 ---------------------------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~ 124 (141)
T cd01857 84 ---------------------------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTI 124 (141)
T ss_pred ---------------------------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEE
Confidence 16899999999999999999999888888899988886543
Q ss_pred EEecCCccEEEEeCCCccc
Q 014461 181 VMTKADTQICIFDTPGLML 199 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~ 199 (424)
.+ +..+.+|||||+..
T Consensus 125 ~~---~~~~~i~DtpG~~~ 140 (141)
T cd01857 125 FL---TPTITLCDCPGLVF 140 (141)
T ss_pred Ee---CCCEEEEECCCcCC
Confidence 33 23689999999863
No 248
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=6.7e-14 Score=114.20 Aligned_cols=161 Identities=18% Similarity=0.180 Sum_probs=118.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
..++-.++|.-|+|||.|+..+...++. .+.|+|.-.. -..+ +.....++.+|||.|...++ .
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfm--adcphtigvefgtriievsgqkiklqiwdtagqerfr------------a 75 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR------------A 75 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHh--hcCCcccceecceeEEEecCcEEEEEEeecccHHHHH------------H
Confidence 3577889999999999999999988774 4444432111 1111 23344567899999986541 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
-+.+.++.+-..++|+|.+++.+ ...+..|+........|+.-+++++||.|+...+....+....|.+..+.. +++
T Consensus 76 vtrsyyrgaagalmvyditrrst--ynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~-fle 152 (215)
T KOG0097|consen 76 VTRSYYRGAAGALMVYDITRRST--YNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLM-FLE 152 (215)
T ss_pred HHHHHhccccceeEEEEehhhhh--hhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeE-EEE
Confidence 22345678889999999976432 345667888777766777788999999999887777777788899888886 999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|+|+++.|-.-.+.+.
T Consensus 153 ~saktg~nvedafle~akkiy 173 (215)
T KOG0097|consen 153 ASAKTGQNVEDAFLETAKKIY 173 (215)
T ss_pred ecccccCcHHHHHHHHHHHHH
Confidence 999999999988765555443
No 249
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.55 E-value=3.9e-14 Score=145.56 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=104.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC--Ccc---eeec----------C------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG--TKV---AAVS----------R------KTNTTTHEVLGVMTKADTQICIFDTP 195 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~--~~~---~~~~----------~------~~~tt~~~~~~~~~~~~~~i~l~Dtp 195 (424)
.+..+|+++|++|+|||||+++|+. +.. ..+. + ..+.|.......+.+.+.++.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4578999999999999999999862 111 1111 0 01223333334466788999999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-hh
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KK 274 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-~~ 274 (424)
|+..+ ...++..+..+|++++|+|++.+.......+.+.+... +.|+++++||+|+... ..
T Consensus 89 G~~df------------~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~------~~PiivviNKiD~~~~~~~ 150 (527)
T TIGR00503 89 GHEDF------------SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR------DTPIFTFMNKLDRDIRDPL 150 (527)
T ss_pred ChhhH------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEEECccccCCCHH
Confidence 98532 23345567789999999999876554444444443331 4789999999998652 23
Q ss_pred hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 275 DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
.+.+.++.......++..+|+ |...++..+.+.+...++.|+
T Consensus 151 ~ll~~i~~~l~~~~~~~~~PI------g~~~~f~gv~d~l~~~~~~y~ 192 (527)
T TIGR00503 151 ELLDEVENELKINCAPITWPI------GCGKLFKGVYHLLKDETYLYQ 192 (527)
T ss_pred HHHHHHHHHhCCCCccEEEEe------cCCCceeEEEEcccCcceecC
Confidence 344444555445555667888 334556666666666665553
No 250
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.55 E-value=6.5e-14 Score=121.80 Aligned_cols=127 Identities=24% Similarity=0.226 Sum_probs=87.1
Q ss_pred CCCCccCCC-CCCCCCCCccChhhHHHHHHhc-CCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 014461 53 SYFRIPTID-DPQNNNAAKKQEPTWDEKYRER-TDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEE 129 (424)
Q Consensus 53 ~dar~p~~~-~~k~Dl~~~~~~~~~~~~~~~~-~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (424)
.....|.+. .||+|+++++....|..++... +..+++.++ ++.|...+. ......+....+. .
T Consensus 26 ~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~----------~~i~~~~~~~~~~---~- 91 (155)
T cd01849 26 KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE----------SAFTKQTNSNLKS---Y- 91 (155)
T ss_pred hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH----------HHHHHHhHHHHHH---H-
Confidence 344566666 7799998877677888777654 455788888 888877772 1111111111110 0
Q ss_pred HHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461 130 EEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 130 ~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~ 197 (424)
..........+++++|.||+|||||+|+|.+.....++..+++|+......+ +..+.++||||+
T Consensus 92 -~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 92 -AKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred -HhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 0111134578899999999999999999999887778889999998765433 356899999995
No 251
>PTZ00258 GTP-binding protein; Provisional
Probab=99.54 E-value=1.5e-13 Score=135.05 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=72.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------------CccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~i~l~DtpG~~~ 199 (424)
....+|+++|.||||||||+|+|++... .++++|+||+++..+.+... ..++.++||||+..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 5678999999999999999999988775 68999999999888876654 33599999999985
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
.... ...+....+..++.+|++++|+|+.
T Consensus 98 ga~~-----g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASE-----GEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcc-----hhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4321 1233456677789999999999984
No 252
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.6e-13 Score=135.23 Aligned_cols=159 Identities=21% Similarity=0.274 Sum_probs=113.7
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..++++-|.++|+-..|||||+.+|.+..++. +...|.|.+.--.. -...|..++|+||||+..+. .|
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~---------aM- 217 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFS---------AM- 217 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecCCCCEEEEecCCcHHHHH---------HH-
Confidence 34578899999999999999999999988874 44455665542222 22367889999999975431 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-------C
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-------L 286 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-------~ 286 (424)
++ .....+|++++|+.+.++...+..+..+..+.. +.|+|+++||||.+. ....+..+++.. .
T Consensus 218 -Ra-RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A------~VpiVvAinKiDkp~--a~pekv~~eL~~~gi~~E~~ 287 (683)
T KOG1145|consen 218 -RA-RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA------NVPIVVAINKIDKPG--ANPEKVKRELLSQGIVVEDL 287 (683)
T ss_pred -Hh-ccCccccEEEEEEEccCCccHhHHHHHHHHHhc------CCCEEEEEeccCCCC--CCHHHHHHHHHHcCccHHHc
Confidence 11 235667999999999887766544443333332 489999999999876 445555555443 3
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.|...++++||++|.|++.|-+.+.-.+
T Consensus 288 GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 288 GGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCceeEEEeecccCCChHHHHHHHHHHH
Confidence 3455799999999999999999886543
No 253
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=113.91 Aligned_cols=157 Identities=16% Similarity=0.189 Sum_probs=104.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
...+.++|-.|+|||||+|.+..+.+. .....|.......++.+...+.+||.||+..++ .+.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~---edmiptvGfnmrk~tkgnvtiklwD~gGq~rfr---------smWer--- 84 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYL---EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR---------SMWER--- 84 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccch---hhhcccccceeEEeccCceEEEEEecCCCccHH---------HHHHH---
Confidence 467999999999999999998765542 223334443444466777889999999986542 22322
Q ss_pred hcccccEEEEEEeCCCCCC--CchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC--C-CCeEE
Q 014461 219 AVNLFEVLMVVFDVHRHLT--SPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP--G-YERIF 293 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~--~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--~-~~~~~ 293 (424)
+.+.+++++||+|++++-. ....++.++|.. +...++|+++.+||.|+.+.- .-.+..+++.-.. . -..+|
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~AL-~~~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPGAL-SKIALIERMGLSSITDREVCCF 160 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCcccc-cHHHHHHHhCccccccceEEEE
Confidence 3577899999999986322 222234444432 333468999999999998752 1222333332111 1 11479
Q ss_pred EEecCCCcChHHHHHHHHHhc
Q 014461 294 MTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+|++...|++.+.+||.++-
T Consensus 161 siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHh
Confidence 999999999999999999864
No 254
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.54 E-value=1.8e-13 Score=125.74 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=103.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.++|+++|.+|||||||+++|.+..+.................... ...++.+|||+|+... +..+
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------------~~~~ 71 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------------RSLR 71 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------------HHHH
Confidence 4899999999999999999999887753332221111111111111 1456899999998643 1122
Q ss_pred -hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH------------HHh
Q 014461 218 -SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE------------QFK 284 (424)
Q Consensus 218 -~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~------------~~~ 284 (424)
.....++++++|+|.+.. .........|...+........|+++|+||+|+............ ...
T Consensus 72 ~~y~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 72 PEYYRGANGILIVYDSTLR-ESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHhcCCCEEEEEEecccc-hhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 345788999999998642 223334445554444333335899999999999875322111111 111
Q ss_pred cCC--CCCeEEEEecC--CCcChHHHHHHHHHhcc
Q 014461 285 HLP--GYERIFMTSGL--KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 285 ~~~--~~~~~~~iSA~--~g~gi~~L~~~i~~~l~ 315 (424)
... ....++.+||+ ++.++++++..+...+.
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 111 12238999999 99999999999888774
No 255
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.53 E-value=1.5e-13 Score=124.89 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=70.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
+|+++|++|||||||+++|.+..+... .+.++......... ..+..+.+|||||+... .. ....
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~---------~~---~~~~ 67 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL---------RD---KLLE 67 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH---------HH---HHHH
Confidence 589999999999999999998765322 11111111111111 23567999999997632 11 1123
Q ss_pred hcccc-cEEEEEEeCCCCCCCchHHHHHHHHHhcc---CCCCCCcEEEEEecCCCCCC
Q 014461 219 AVNLF-EVLMVVFDVHRHLTSPDSRVIRLIERMGK---QAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 219 ~~~~a-D~vl~VvD~~~~~~~~~~~~~~~l~~~~~---~~~~~~p~ilV~NK~Dl~~~ 272 (424)
.+..+ +++|+|+|++... ........++..+.. ...+..|+++|+||+|+...
T Consensus 68 ~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 45566 9999999997542 122222233322111 11235899999999998653
No 256
>PRK12289 GTPase RsgA; Reviewed
Probab=99.53 E-value=3.7e-15 Score=145.32 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=86.1
Q ss_pred cEEEEeCCCCccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 014461 47 DSVFDSSYFRIPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALER 124 (424)
Q Consensus 47 d~vie~~dar~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (424)
++++.+....+|++. .||+||++.+....|..+|...|+.++++++ ++.|...+ ++. +
T Consensus 111 R~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL-----------------~~~-L-- 170 (352)
T PRK12289 111 RFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEAL-----------------LEQ-L-- 170 (352)
T ss_pred HHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHH-----------------hhh-h--
Confidence 333344445566666 7899998877778899999899999999998 88887666 111 1
Q ss_pred hHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-------ceeeEEEEEEecCCccEEEEeCCCc
Q 014461 125 QEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-------TTTHEVLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 125 ~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-------tt~~~~~~~~~~~~~~i~l~DtpG~ 197 (424)
....++|+|+||||||||+|+|++.....++..++ ||++.....+..++ .++||||+
T Consensus 171 -------------~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~ 234 (352)
T PRK12289 171 -------------RNKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGF 234 (352)
T ss_pred -------------ccceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCc
Confidence 11247999999999999999999876655555555 77776543332222 89999999
Q ss_pred ccCCC
Q 014461 198 MLNKS 202 (424)
Q Consensus 198 ~~~~~ 202 (424)
..+..
T Consensus 235 ~~~~l 239 (352)
T PRK12289 235 NQPDL 239 (352)
T ss_pred ccccc
Confidence 87653
No 257
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.53 E-value=2.5e-13 Score=122.98 Aligned_cols=144 Identities=17% Similarity=0.145 Sum_probs=87.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEec-------CCccEEEEeCCCcccCCCCCChhhhhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTK-------ADTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~-------~~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
.+|+++|.+|||||||++++++..+.. ....|.. ......+.. ....+.+|||+|...+. .
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~---------~ 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK---------S 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHH---------H
Confidence 379999999999999999999877642 2222211 111111222 22458899999986431 1
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-------------------CCCCCcEEEEEecCCCCCC
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-------------------APPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~p~ilV~NK~Dl~~~ 272 (424)
+. ...+..+|++|+|+|.++.. ....+..|+.++... ...+.|+++|+||+|+.+.
T Consensus 70 -l~--~~~yr~ad~iIlVyDvtn~~--Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 70 -TR--AVFYNQVNGIILVHDLTNRK--SSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred -HH--HHHhCcCCEEEEEEECcChH--HHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 11 13467899999999998643 333455666555321 1235899999999999764
Q ss_pred hhh----HHHHHHHHhcCCCCCeEEEEecCCC
Q 014461 273 KKD----LLKVAEQFKHLPGYERIFMTSGLKG 300 (424)
Q Consensus 273 ~~~----~~~~~~~~~~~~~~~~~~~iSA~~g 300 (424)
+.. .......+++..+.+ .+..++..+
T Consensus 145 r~~~~~~~~~~~~~ia~~~~~~-~i~~~c~~~ 175 (202)
T cd04102 145 KESSGNLVLTARGFVAEQGNAE-EINLNCTNG 175 (202)
T ss_pred cccchHHHhhHhhhHHHhcCCc-eEEEecCCc
Confidence 211 112233455555665 555666644
No 258
>PRK13351 elongation factor G; Reviewed
Probab=99.52 E-value=1e-13 Score=148.17 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=79.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcc-----eee------cC------CCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKV-----AAV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
...+|+++|+.|+|||||+++|+...- ..+ .+ ..+.|.......+.+.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 457899999999999999999974211 001 00 1233433333446677889999999998643
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+...+..+|++++|+|++++.......+...+... +.|+++|+||+|+...
T Consensus 87 ------------~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~------~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 ------------TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY------GIPRLIFINKMDRVGA 140 (687)
T ss_pred ------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEECCCCCCC
Confidence 12233456778999999999876554444444444332 4789999999998763
No 259
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.52 E-value=3e-13 Score=126.20 Aligned_cols=139 Identities=20% Similarity=0.176 Sum_probs=92.7
Q ss_pred hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhh
Q 014461 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVK 210 (424)
Q Consensus 132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~ 210 (424)
.++......+|+++|.+|||||||+|+|+|.....++....+|..........++..+.+|||||+.+... ........
T Consensus 24 ~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~ 103 (249)
T cd01853 24 GKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKIL 103 (249)
T ss_pred hhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHH
Confidence 34566678999999999999999999999998877777777777766666667788999999999976521 01111111
Q ss_pred hHHHHHHhhcccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 211 VRVESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 211 ~~~~~~~~~~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
..+...+. -...|++++|...+. .....+..+.+.+.+...... -.++++|+||+|...+
T Consensus 104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i-~~~~ivV~T~~d~~~p 164 (249)
T cd01853 104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI-WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh-HhCEEEEEeCCccCCC
Confidence 11222211 125688998876642 334444466666665432111 1469999999998654
No 260
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.52 E-value=8.7e-15 Score=136.91 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=119.5
Q ss_pred HHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccChh--hHHHHHHhcCCeEEEeec-cccccchhhh
Q 014461 27 IHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQEP--TWDEKYRERTDRIVFGEE-AQKGKLRIFQ 102 (424)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~~~--~~~~~~~~~~~~i~f~~~-~~~~~~~l~~ 102 (424)
+-.+++..|.++. .. +.++++.++...+.++. .+|+||++.+... ++...|.+.||.+++.++ ++.+...+
T Consensus 84 iiIvs~~~P~~~~--~~-ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l-- 158 (301)
T COG1162 84 IIVVSLVDPDFNT--NL-LDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEEL-- 158 (301)
T ss_pred EEEEeccCCCCCH--HH-HHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHH--
Confidence 3346777777777 77 77899999999998777 9999999877655 689999999999999998 77787766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCc---ceeec----CCCCcee
Q 014461 103 EEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTK---VAAVS----RKTNTTT 175 (424)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~---~~~~~----~~~~tt~ 175 (424)
...+ .+...+++|++|||||||+|+|.+.. ...++ ..-+||+
T Consensus 159 ----------------~~~l---------------~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt 207 (301)
T COG1162 159 ----------------AELL---------------AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT 207 (301)
T ss_pred ----------------HHHh---------------cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc
Confidence 1111 34468899999999999999999743 22233 3346777
Q ss_pred eEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 176 HEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 176 ~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
+.....+..+| .++||||+.+..- .....++...+......+..| -.-|++ +..++...+...++
T Consensus 208 ~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~C----kFr~C~-H~~EPgCav~~av~ 273 (301)
T COG1162 208 HVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQC----KFRDCT-HTHEPGCAVKAAVE 273 (301)
T ss_pred eEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCC----CCCCCC-CCCCCCcHHHHHHH
Confidence 76665555556 8999999987653 233333333333333222221 223343 34455555555444
No 261
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.51 E-value=4e-13 Score=124.04 Aligned_cols=140 Identities=16% Similarity=0.344 Sum_probs=91.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...+..|+++|.+|+|||||+|.|.+.. ...+....++ .......+.++.++||||.. .
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-----i~i~~~~~~~i~~vDtPg~~---------------~ 95 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-----ITVVTGKKRRLTFIECPNDI---------------N 95 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-----EEEEecCCceEEEEeCCchH---------------H
Confidence 4567889999999999999999998642 1112222222 11233467889999999842 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChhhHHHHHHHH-----hcCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKKDLLKVAEQF-----KHLPG 288 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~~~~~~~~~~-----~~~~~ 288 (424)
..+..+..+|++++|+|++.+....+..+..++...+ .|. ++|+||+|+........+....+ .+...
T Consensus 96 ~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g------~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~ 169 (225)
T cd01882 96 AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHG------FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQ 169 (225)
T ss_pred HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcC------CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCC
Confidence 2233457789999999998776665656666665543 564 55999999975433233222222 22345
Q ss_pred CCeEEEEecCCCc
Q 014461 289 YERIFMTSGLKGA 301 (424)
Q Consensus 289 ~~~~~~iSA~~g~ 301 (424)
+.+++++||++.-
T Consensus 170 ~~ki~~iSa~~~~ 182 (225)
T cd01882 170 GAKLFYLSGIVHG 182 (225)
T ss_pred CCcEEEEeeccCC
Confidence 5689999999763
No 262
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.50 E-value=2.2e-12 Score=125.33 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=71.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS 202 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~ 202 (424)
++|+++|.||||||||+|+|++.. ..++++|+||+++..+.+...+ .++.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999988 5789999999988887765544 2589999999975321
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
.........+..++.+|++++|+|+.
T Consensus 82 -----~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 -----KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred -----hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11233456677889999999999985
No 263
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.50 E-value=1.8e-13 Score=132.83 Aligned_cols=160 Identities=18% Similarity=0.252 Sum_probs=108.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcc--------------eeecCCCCceeeEEEEE--Eec---CCccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKV--------------AAVSRKTNTTTHEVLGV--MTK---ADTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~--------------~~~~~~~~tt~~~~~~~--~~~---~~~~i~l~DtpG~~ 198 (424)
+..+..++.+-..|||||..+|+.... .......|.|....... +.. ..+.+.|+||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 346788999999999999999974211 01223334554433322 222 34668999999998
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL 277 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~ 277 (424)
++.. .+.++ +..|.+.++|+|++++...+.. .+...++. +..++-|+||+||+. ++..
T Consensus 88 DFsY---------EVSRS---LAACEGalLvVDAsQGveAQTlAN~YlAle~-------~LeIiPViNKIDLP~--Adpe 146 (603)
T COG0481 88 DFSY---------EVSRS---LAACEGALLVVDASQGVEAQTLANVYLALEN-------NLEIIPVLNKIDLPA--ADPE 146 (603)
T ss_pred ceEE---------Eehhh---HhhCCCcEEEEECccchHHHHHHHHHHHHHc-------CcEEEEeeecccCCC--CCHH
Confidence 7642 23333 4557899999999987655432 22222321 356899999999987 4455
Q ss_pred HHHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 278 KVAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 278 ~~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
...+++.+..|.+ ..+.||||+|.||+++++.|.+.+|...
T Consensus 147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 5556666555554 5789999999999999999999997543
No 264
>PTZ00099 rab6; Provisional
Probab=99.49 E-value=2.8e-13 Score=120.32 Aligned_cols=119 Identities=18% Similarity=0.133 Sum_probs=79.3
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
...++.+|||||...+.. ... ..++.+|++|+|+|+++..+ ...+..|+..+.....++.|+++|+
T Consensus 27 ~~v~l~iwDt~G~e~~~~---------~~~---~~~~~ad~~ilv~D~t~~~s--f~~~~~w~~~i~~~~~~~~piilVg 92 (176)
T PTZ00099 27 GPVRLQLWDTAGQERFRS---------LIP---SYIRDSAAAIVVYDITNRQS--FENTTKWIQDILNERGKDVIIALVG 92 (176)
T ss_pred EEEEEEEEECCChHHhhh---------ccH---HHhCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 346789999999865421 111 23578999999999976322 2333455554433223458899999
Q ss_pred ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
||+|+...+.........+....+. .++++||++|.||+++|++|.+.+++.+
T Consensus 93 NK~DL~~~~~v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 93 NKTDLGDLRKVTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ECcccccccCCCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 9999965322222223333433444 4899999999999999999999987644
No 265
>PRK12288 GTPase RsgA; Reviewed
Probab=99.48 E-value=3.9e-14 Score=138.19 Aligned_cols=174 Identities=16% Similarity=0.111 Sum_probs=109.6
Q ss_pred hhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCcc---ChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHH
Q 014461 32 SAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEE 106 (424)
Q Consensus 32 ~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~---~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~ 106 (424)
+..|.+++ .. ..++++.+++..+|.+. .||+||.+.. ....|...|...++.++++++ ++.|...+
T Consensus 129 s~~p~~s~--~~-Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL------ 199 (347)
T PRK12288 129 AVLPELSL--NI-IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEEL------ 199 (347)
T ss_pred eCCCCCCH--HH-HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHH------
Confidence 34454444 33 45566667778888888 9999998754 356788888888999999998 88887766
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-------CceeeEEE
Q 014461 107 ERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NTTTHEVL 179 (424)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-------~tt~~~~~ 179 (424)
.+ .+. ...++|+|.||||||||+|+|++.....++..+ +||+....
T Consensus 200 -----------~~-~L~---------------~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l 252 (347)
T PRK12288 200 -----------EA-ALT---------------GRISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL 252 (347)
T ss_pred -----------HH-HHh---------------hCCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE
Confidence 11 110 113789999999999999999987655554443 36666655
Q ss_pred EEEecCCccEEEEeCCCcccCCCC-CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461 180 GVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (424)
Q Consensus 180 ~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~ 249 (424)
..+..++ .++||||+....-. ...+.+...+.........| -.-|++ +..++...+.+.++.
T Consensus 253 ~~l~~~~---~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~C----rF~dC~-H~~EpgCaV~~Av~~ 315 (347)
T PRK12288 253 YHFPHGG---DLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTC----KFRDCK-HDDDPGCALREAVEE 315 (347)
T ss_pred EEecCCC---EEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCC----CCCCCc-cCCCCCChHHHHHHc
Confidence 4443333 69999999876532 22223333333322222222 223443 445566666666653
No 266
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=4.6e-14 Score=117.52 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=105.4
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCcee----eEEEEEEecC---------CccEEEEeCCCcccCCCCCChh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT----HEVLGVMTKA---------DTQICIFDTPGLMLNKSGYSHK 207 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~----~~~~~~~~~~---------~~~i~l~DtpG~~~~~~~~~~~ 207 (424)
+.+.+|.+||||||++.+....++. ....+|. .....++... ...+.+|||.|+..+++
T Consensus 11 kfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS----- 82 (219)
T KOG0081|consen 11 KFLALGDSGVGKTSFLYQYTDGKFN---TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS----- 82 (219)
T ss_pred HHHhhccCCCCceEEEEEecCCccc---ceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-----
Confidence 4567899999999999988866542 1111110 0111111111 12478999999876521
Q ss_pred hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC-CCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP-KQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~-~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (424)
.+-...++|-..++++|.++. .+...+..|+.++....-- +.-+++++||+|+.+.+....+....+++.
T Consensus 83 -------LTTAFfRDAMGFlLiFDlT~e--qSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 83 -------LTTAFFRDAMGFLLIFDLTSE--QSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred -------HHHHHHHhhccceEEEeccch--HHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence 112235667889999999753 2334566777666543221 234889999999998777777778888888
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
++.+ +|++||-+|.||++..+.|...+
T Consensus 154 yglP-YfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 154 YGLP-YFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred hCCC-eeeeccccCcCHHHHHHHHHHHH
Confidence 8987 99999999999999888777654
No 267
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.48 E-value=7.1e-13 Score=134.00 Aligned_cols=151 Identities=18% Similarity=0.228 Sum_probs=96.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc------------------------e------eecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV------------------------A------AVSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~------------------------~------~~~~~~~tt~~~~~~~~~~~~ 186 (424)
....+|+++|+.++|||||+.+|+...- + ......+.|.+.....+...+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3568899999999999999999873110 0 011122455555555566778
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCC-
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQ- 258 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~- 258 (424)
..+.++||||+.++ .......+..+|++++|+|+..+.- .........+..++ .
T Consensus 85 ~~i~liDtPGh~df------------~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~g------i~ 146 (447)
T PLN00043 85 YYCTVIDAPGHRDF------------IKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLG------VK 146 (447)
T ss_pred EEEEEEECCCHHHH------------HHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcC------CC
Confidence 88999999997643 3444556778999999999986421 11222223333332 4
Q ss_pred cEEEEEecCCCCCC---hhhHH---HHHHHHhcCCCC----CeEEEEecCCCcChHH
Q 014461 259 KRVLCMNKVDLVTK---KKDLL---KVAEQFKHLPGY----ERIFMTSGLKGAGLKA 305 (424)
Q Consensus 259 p~ilV~NK~Dl~~~---~~~~~---~~~~~~~~~~~~----~~~~~iSA~~g~gi~~ 305 (424)
++|+++||+|+... ...+. +.++.+....++ .+++++||++|.|+.+
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 47889999998621 12222 223333333343 3599999999999864
No 268
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.47 E-value=7.5e-14 Score=115.47 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=69.5
Q ss_pred EEEEEecCCCChhHHHHhHhCCcce---eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVA---AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~---~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
||+|+|.+|||||||+++|++.... ......+.+..............+.+||++|........ .
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~---------~--- 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQH---------Q--- 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTS---------H---
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccc---------c---
Confidence 6899999999999999999987765 112222222222222233333458899999985432110 0
Q ss_pred hhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~D 268 (424)
..+..+|++++|+|.++..+... ..+..++....... .+.|+++|+||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 11566899999999975322211 13445566654322 2489999999998
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=5.8e-13 Score=130.05 Aligned_cols=174 Identities=16% Similarity=0.205 Sum_probs=116.4
Q ss_pred hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhh
Q 014461 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
+..-......++++|.||||||||+|.+...... +.+++.||.....+++.+.--.+.++||||+.+... ......+
T Consensus 161 lPsIDp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl--EdrN~IE 237 (620)
T KOG1490|consen 161 LPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE--EDRNIIE 237 (620)
T ss_pred CCCCCCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcch--hhhhHHH
Confidence 3344667889999999999999999998877664 789999999888887777666788999999975421 1111111
Q ss_pred HHH-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCC
Q 014461 212 RVE-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLP 287 (424)
Q Consensus 212 ~~~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~ 287 (424)
+.. .++..+ -.+|+|+.|.+......-..-.++...+... ..+.|+|+|+||+|+.... +.-.+.++.+.+..
T Consensus 238 mqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~ 314 (620)
T KOG1490|consen 238 MQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDG 314 (620)
T ss_pred HHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhcc
Confidence 111 223333 3579999999866555444333333333211 1257899999999998753 22234555555554
Q ss_pred CCCeEEEEecCCCcChHHHHHHHHH
Q 014461 288 GYERIFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 288 ~~~~~~~iSA~~g~gi~~L~~~i~~ 312 (424)
+. .++.+|..+.+|+-++...-++
T Consensus 315 ~v-~v~~tS~~~eegVm~Vrt~ACe 338 (620)
T KOG1490|consen 315 NV-KVVQTSCVQEEGVMDVRTTACE 338 (620)
T ss_pred Cc-eEEEecccchhceeeHHHHHHH
Confidence 44 4999999999998776554443
No 270
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=9.1e-13 Score=113.60 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=105.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..+..+|+++|-.||||||+++.|...++..+.+..+.... .+.+.+..+.+||..|+...+.. .
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE----~v~ykn~~f~vWDvGGq~k~R~l---------W-- 78 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE----TVEYKNISFTVWDVGGQEKLRPL---------W-- 78 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee----EEEEcceEEEEEecCCCcccccc---------h--
Confidence 34568999999999999999999987766544333333333 24466889999999998643221 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCCCC-Ce
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPGY-ER 291 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~-~~ 291 (424)
..++...+++|||+|.++...- ....+.+..+ ......+.|+++..||.|+...-. ..++.+.+ ....+. -.
T Consensus 79 -~~Y~~~t~~lIfVvDS~Dr~Ri--~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als-~~ei~~~L~l~~l~~~~w~ 154 (181)
T KOG0070|consen 79 -KHYFQNTQGLIFVVDSSDRERI--EEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS-AAEITNKLGLHSLRSRNWH 154 (181)
T ss_pred -hhhccCCcEEEEEEeCCcHHHH--HHHHHHHHHHHcCcccCCceEEEEechhhccccCC-HHHHHhHhhhhccCCCCcE
Confidence 1345778999999999764222 1222223322 222234689999999999986421 11111111 111111 14
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+..|+|.+|+|+.+-++||.+.+.
T Consensus 155 iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 155 IQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred EeeccccccccHHHHHHHHHHHHh
Confidence 788999999999999999998874
No 271
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.45 E-value=4.4e-12 Score=109.19 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=107.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee-------cCC--CCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCCh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRK--TNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSH 206 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~--~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~ 206 (424)
....+|++.|+.++||||++.++.......+ +.. ..||...-.+.+...+ ..++|+||||+..+
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------ 81 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------ 81 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH------
Confidence 4568999999999999999999987553221 111 1244444444444444 78999999998654
Q ss_pred hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (424)
Q Consensus 207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (424)
..++.. ..+.++.+++++|.+.+.......+.+.+.... ..|+++++||.|+.... -..+..+.+...
T Consensus 82 ---~fm~~~---l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~-----~ip~vVa~NK~DL~~a~-ppe~i~e~l~~~ 149 (187)
T COG2229 82 ---KFMWEI---LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRN-----PIPVVVAINKQDLFDAL-PPEKIREALKLE 149 (187)
T ss_pred ---HHHHHH---HhCCcceEEEEEecCCCcchHHHHHHHHHhhcc-----CCCEEEEeeccccCCCC-CHHHHHHHHHhc
Confidence 222222 246689999999998876664455555555432 27899999999998742 122222333322
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.--.++++++|..++|..+.++.+...
T Consensus 150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCCceeeeecccchhHHHHHHHHHhh
Confidence 112359999999999999999988876
No 272
>PLN00023 GTP-binding protein; Provisional
Probab=99.45 E-value=1.2e-12 Score=124.78 Aligned_cols=138 Identities=19% Similarity=0.226 Sum_probs=85.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEec---------------CCccEEEEeCCCccc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMTK---------------ADTQICIFDTPGLML 199 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~---------------~~~~i~l~DtpG~~~ 199 (424)
....+||+++|..|||||||++++++..+.. ....|. .......+.. ....+.||||+|...
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~--~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIA--RPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCccc--ccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 4456899999999999999999999876532 111111 1111111221 124588999999865
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC------------CCCCcEEEEEecC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA------------PPKQKRVLCMNKV 267 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~------------~~~~p~ilV~NK~ 267 (424)
+.. +. -..+..+|++|+|+|+++.. ....+..|+..+.... ..+.|+++|+||+
T Consensus 96 frs----------L~--~~yyr~AdgiILVyDITdr~--SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 96 YKD----------CR--SLFYSQINGVIFVHDLSQRR--TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred hhh----------hh--HHhccCCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 421 11 12367899999999997632 3334555655554321 1247999999999
Q ss_pred CCCCChh------hHHHHHHHHhcCCCC
Q 014461 268 DLVTKKK------DLLKVAEQFKHLPGY 289 (424)
Q Consensus 268 Dl~~~~~------~~~~~~~~~~~~~~~ 289 (424)
|+...+. ...+..+.+++..++
T Consensus 162 DL~~~~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 162 DIAPKEGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccccccccccHHHHHHHHHHcCC
Confidence 9965321 234566677665543
No 273
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.4e-12 Score=125.55 Aligned_cols=164 Identities=22% Similarity=0.358 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC------------------------cceee------cCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT------------------------KVAAV------SRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~------------------------~~~~~------~~~~~tt~~~~~~~~~~~~ 186 (424)
....+++++|+..+|||||+-+|+.. .++-+ ....+.|.+.....+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 35688999999999999999998741 01111 1223455555555566677
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p 259 (424)
..+.++|+||+.++ +........+||+.++|+|++.+ ...+..+-.-+...++ -..
T Consensus 85 ~~~tIiDaPGHrdF------------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~ 147 (428)
T COG5256 85 YNFTIIDAPGHRDF------------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQ 147 (428)
T ss_pred ceEEEeeCCchHHH------------HHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----Cce
Confidence 78999999996543 55666778899999999999865 2223323222333333 134
Q ss_pred EEEEEecCCCCCChh-hH---HHHHHHHhcCCCCC----eEEEEecCCCcChHHHHHHHHHhccCCCCCCCCC
Q 014461 260 RVLCMNKVDLVTKKK-DL---LKVAEQFKHLPGYE----RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPL 324 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~~-~~---~~~~~~~~~~~~~~----~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~ 324 (424)
+|+++||+|+.+-++ .. ...+..+.+..++. +++||||.+|.|+.+-- ...||+..+.
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s-------~~~pWY~GpT 213 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS-------ENMPWYKGPT 213 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC-------cCCcCccCCh
Confidence 899999999986432 22 22333344444443 59999999999987643 2457766554
No 274
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.44 E-value=1.2e-12 Score=123.28 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=68.3
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-----------------cEEEEeCCCcccCCCCC
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-----------------QICIFDTPGLMLNKSGY 204 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-----------------~i~l~DtpG~~~~~~~~ 204 (424)
|+++|.||||||||+|+|++.+. .++++|+||.+...+.+...+. ++.++||||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~-- 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS-- 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc--
Confidence 58999999999999999999887 6899999999888877665443 489999999985422
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
.........+..++.+|++++|+|+.
T Consensus 78 ---~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 78 ---KGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ---hhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 11223345667788999999999974
No 275
>PRK12740 elongation factor G; Reviewed
Probab=99.43 E-value=9.7e-13 Score=140.44 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=73.5
Q ss_pred EecCCCChhHHHHhHhCCcce-----------eecC------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChh
Q 014461 145 IGAPNAGKSSIINYMVGTKVA-----------AVSR------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHK 207 (424)
Q Consensus 145 vG~~~~GKStLin~l~~~~~~-----------~~~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~ 207 (424)
+|++|+|||||+++|+...-. .+.+ ..+.|.......+.+.+..+.+|||||...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 599999999999999642211 0111 1344444444556778899999999998532
Q ss_pred hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 208 DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 208 ~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+...+..+|++++|+|++.+.......+...+... +.|+++|+||+|+...
T Consensus 74 -----~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~------~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -----TGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY------GVPRIIFVNKMDRAGA 127 (668)
T ss_pred -----HHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc------CCCEEEEEECCCCCCC
Confidence 12233446678999999999876544443444444332 4789999999998753
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.43 E-value=2.2e-12 Score=122.26 Aligned_cols=134 Identities=24% Similarity=0.335 Sum_probs=88.5
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
......++|+++|.+|+||||++|+|+|.+.+.++....++..........++.++.+|||||+.+.. .........+
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~--~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG--YINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH--HHHHHHHHHH
Confidence 44567899999999999999999999999877666666555544444445678899999999997542 1111111112
Q ss_pred HHHHhhcccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
+... .-...|+++||...+. ..+..+..+.+.+........ ..++|+|+|+.|...
T Consensus 111 k~~l-~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~i-w~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 111 KRFL-LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDI-WRKSLVVLTHAQFSP 167 (313)
T ss_pred HHHh-hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhh-hccEEEEEECCccCC
Confidence 2221 1236899999965432 344455666666665542211 246899999999764
No 277
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.43 E-value=4.1e-13 Score=131.74 Aligned_cols=154 Identities=26% Similarity=0.409 Sum_probs=100.3
Q ss_pred CCcEEEEeCCCCccCCC-CC--------------------CCCCCCccChhhHHHHHHhcCCeEEEeec---cccccchh
Q 014461 45 DCDSVFDSSYFRIPTID-DP--------------------QNNNAAKKQEPTWDEKYRERTDRIVFGEE---AQKGKLRI 100 (424)
Q Consensus 45 ~~d~vie~~dar~p~~~-~~--------------------k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~---~~~~~~~l 100 (424)
-+|+||.+.|||-|++. ++ |.||.+++...+|..||.+.+-.++|-++ +..+-...
T Consensus 174 rSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~~~~~~ 253 (562)
T KOG1424|consen 174 RSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQLESKV 253 (562)
T ss_pred hcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecccccccccccc
Confidence 36999999999999999 55 55999999999999999999988777777 22222211
Q ss_pred hhHHH----HHHHHH----------HHHHHHHH-HHHHhhHHH--HHHhh-----hhcccceEEEEEecCCCChhHHHHh
Q 014461 101 FQEEE----EERKHR----------ALAKALLQ-AALERQEEE--EEEVK-----EEDQKSVAVGIIGAPNAGKSSIINY 158 (424)
Q Consensus 101 ~~~~~----~~~~~~----------~~~~~~~~-~~l~~~~~~--~~~~~-----~~~~~~~~v~vvG~~~~GKStLin~ 158 (424)
.++.. ...... .+.+.... ..+...+.+ ..... +.......|++||.|||||||+||+
T Consensus 254 ~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINa 333 (562)
T KOG1424|consen 254 LKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINA 333 (562)
T ss_pred hhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHH
Confidence 11110 000000 00000000 000000000 00000 1111248899999999999999999
Q ss_pred HhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 159 MVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 159 l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
|.|.+...|+..||.|.+-+...+. ..+.|.|+||..-+.
T Consensus 334 LvG~KkVsVS~TPGkTKHFQTi~ls---~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 334 LVGRKKVSVSSTPGKTKHFQTIFLS---PSVCLCDCPGLVFPS 373 (562)
T ss_pred HhcCceeeeecCCCCcceeEEEEcC---CCceecCCCCccccC
Confidence 9999988899999999998765443 467999999998664
No 278
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.43 E-value=5.6e-13 Score=117.79 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=113.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-Cc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++++||..++|||+|+..+....+. ..+..|-.+.....+..+ +. .+.+|||.|+.++... +
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp--~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrl----------R 70 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFP--EEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRL----------R 70 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCc--ccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccc----------c
Confidence 4688999999999999999998877654 333344444443434442 44 4689999999876431 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH------------HHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL------------LKVAEQ 282 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~------------~~~~~~ 282 (424)
. -.+.++|+++++|+..++.+.. ....+|+.++.... ++.|+|+|++|.||..+...+ .+....
T Consensus 71 -p-lsY~~tdvfl~cfsv~~p~S~~-nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~ 146 (198)
T KOG0393|consen 71 -P-LSYPQTDVFLLCFSVVSPESFE-NVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLE 146 (198)
T ss_pred -c-cCCCCCCEEEEEEEcCChhhHH-HHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHH
Confidence 1 1467789999999987654332 22345666665444 569999999999998542111 122344
Q ss_pred HhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
+++..|...+++|||++..|++++|+.........
T Consensus 147 lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~ 181 (198)
T KOG0393|consen 147 LAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRP 181 (198)
T ss_pred HHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcc
Confidence 55666777899999999999999999888776443
No 279
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.42 E-value=1.1e-12 Score=122.58 Aligned_cols=153 Identities=21% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCccCCC-CCCCCCCCccC-hhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014461 55 FRIPTID-DPQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEE 131 (424)
Q Consensus 55 ar~p~~~-~~k~Dl~~~~~-~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (424)
..+|++. .||+||.+... ..+|...|.+.++.++++++ ++.|..++ .+ .+
T Consensus 66 ~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eL-----------------f~-~l--------- 118 (245)
T TIGR00157 66 QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKEL-----------------IE-AL--------- 118 (245)
T ss_pred CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHH-----------------Hh-hh---------
Confidence 3445555 67999976444 34788889888888899998 87887666 11 11
Q ss_pred hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCC-
Q 014461 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSG- 203 (424)
Q Consensus 132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~- 203 (424)
....++++|+||||||||+|+|.+.....+++ ..+||++.....+ .++ .++||||+..+.-.
T Consensus 119 ------~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~---~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 119 ------QNRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGG---LIADTPGFNEFGLWH 188 (245)
T ss_pred ------cCCEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCc---EEEeCCCccccCCCC
Confidence 12468999999999999999999865433222 3347777665444 222 89999999876431
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~ 249 (424)
....++...+......... +-.-|.+ +..++...+.+.++.
T Consensus 189 ~~~~~~~~~f~e~~~~~~~----C~f~~C~-H~~ep~C~v~~a~~~ 229 (245)
T TIGR00157 189 LEPEQLTQGFVEFRDYLGE----CKFRDCL-HQSEPGCAVRQAVEQ 229 (245)
T ss_pred CCHHHHHHhCHHHHHHhCC----CCCCCCc-cCCCCCChHHHHHHc
Confidence 2222333333322222222 2223443 456666677666653
No 280
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.41 E-value=5.7e-12 Score=116.71 Aligned_cols=194 Identities=20% Similarity=0.253 Sum_probs=114.5
Q ss_pred hhhhcccceEEEEEecCCCChhHHHHhHh------CCcceee--cCCCCceeeEEEE-----------------------
Q 014461 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAV--SRKTNTTTHEVLG----------------------- 180 (424)
Q Consensus 132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~--~~~~~tt~~~~~~----------------------- 180 (424)
..+...+...|+|.|.||+|||||+..|. |.+++.. .+..+.|.....+
T Consensus 44 l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG 123 (323)
T COG1703 44 LYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG 123 (323)
T ss_pred HhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc
Confidence 44666778899999999999999999986 3333322 2222222111100
Q ss_pred --------------EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461 181 --------------VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (424)
Q Consensus 181 --------------~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~ 246 (424)
.+.-.++.++++.|.|..... - .....+|.+++|.-. +..+....+..-
T Consensus 124 ~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse-----v----------~I~~~aDt~~~v~~p--g~GD~~Q~iK~G 186 (323)
T COG1703 124 TLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE-----V----------DIANMADTFLVVMIP--GAGDDLQGIKAG 186 (323)
T ss_pred cchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch-----h----------HHhhhcceEEEEecC--CCCcHHHHHHhh
Confidence 022346889999999987542 1 123457988888765 334444444455
Q ss_pred HHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH-------HhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-------FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~-------~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
+-++. -++|+||.|....+....+.... +......++++.+||.+|+|+++|++.|.++......
T Consensus 187 imEia--------Di~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 187 IMEIA--------DIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred hhhhh--------heeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 55544 58999999965542222111111 1222344689999999999999999999987754321
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHHHhhcCcc
Q 014461 320 SEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~e~ire~l~~~l~~e 350 (424)
..-...........+...++++.+.+.+..+
T Consensus 259 sg~~~~~rr~q~~~~~~~~v~~~v~~~~~~~ 289 (323)
T COG1703 259 SGLFTEKRRTQYVEWIRTLVRDEVLDRLEAN 289 (323)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1111111122233344556666666666443
No 281
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.41 E-value=1.4e-13 Score=125.90 Aligned_cols=156 Identities=20% Similarity=0.310 Sum_probs=88.7
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCC--Cce---------------e---eEEEEE------
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKT--NTT---------------T---HEVLGV------ 181 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~--~tt---------------~---~~~~~~------ 181 (424)
+...+...|+|.|+||+|||||++.|. |.+++...-.| ..| . -..+..
T Consensus 24 ~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~l 103 (266)
T PF03308_consen 24 PHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSL 103 (266)
T ss_dssp GGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSH
T ss_pred hhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCC
Confidence 445578899999999999999999986 33333221111 111 0 001110
Q ss_pred -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
+...++.++|+.|.|.... + + .....+|.+++|+-... .+....+..-+-
T Consensus 104 GGls~~t~~~v~ll~aaG~D~IiiETVGvGQs-------E----~----~I~~~aD~~v~v~~Pg~--GD~iQ~~KaGim 166 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIIIETVGVGQS-------E----V----DIADMADTVVLVLVPGL--GDEIQAIKAGIM 166 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEEEESSSTH-------H----H----HHHTTSSEEEEEEESST--CCCCCTB-TTHH
T ss_pred CCccHhHHHHHHHHHHcCCCEEEEeCCCCCcc-------H----H----HHHHhcCeEEEEecCCC--ccHHHHHhhhhh
Confidence 2335788999999998743 1 1 22456899999988743 222222223333
Q ss_pred HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
++ .-++|+||+|+...+....+....+.-. ...++++.+||.+|.|+++|++.|.++.
T Consensus 167 Ei--------aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 167 EI--------ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp HH---------SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hh--------ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33 2589999999654322222222222211 1235899999999999999999998765
No 282
>PRK13768 GTPase; Provisional
Probab=99.41 E-value=1.4e-12 Score=122.35 Aligned_cols=126 Identities=19% Similarity=0.189 Sum_probs=74.8
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+.+|||||..+.... ......+.+.+.... ++++++|+|++......+.....++...... ..+.|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~---~~~~~~~~~~l~~~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF---RESGRKLVERLSGSS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh---hHHHHHHHHHHHhcC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEh
Confidence 46899999998764211 111111222222222 7999999999754444343333333211100 014789999999
Q ss_pred CCCCCChh--hHHHHHH-------------------------HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 267 VDLVTKKK--DLLKVAE-------------------------QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 267 ~Dl~~~~~--~~~~~~~-------------------------~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
+|+.+..+ ......+ .+........++++||+++.|+++|+++|.+.++..
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 99986521 1111111 122223334689999999999999999999998654
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.40 E-value=5.8e-12 Score=119.71 Aligned_cols=127 Identities=16% Similarity=0.253 Sum_probs=76.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecC--------CCCcee-eEEEEEEecCC--ccEEEEeCCCcccCCCCCC-h
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------KTNTTT-HEVLGVMTKAD--TQICIFDTPGLMLNKSGYS-H 206 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~--------~~~tt~-~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~-~ 206 (424)
.++|+++|.+|+|||||+|+|++..+..... ...|+. ......+..++ .++.+|||||+.+...... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 5789999999999999999999887654332 222322 22222333444 4689999999976532110 0
Q ss_pred hhhh----hHHHHHH---------hhc--ccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 207 KDVK----VRVESAW---------SAV--NLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 207 ~~~~----~~~~~~~---------~~~--~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
..+. ..+...+ ..+ ..+|+++++++.+. ++...+..+++.+.. ..|+++|+||+|+.
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-------~v~vi~VinK~D~l 156 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-------cCCEEEEEECCCcC
Confidence 1111 0111111 011 25789999999864 333334444444432 37899999999997
Q ss_pred CC
Q 014461 271 TK 272 (424)
Q Consensus 271 ~~ 272 (424)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 63
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.40 E-value=3.3e-12 Score=116.91 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=105.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++|+++|.+|+||||++|.|+|......+. ....|...........+..+.++||||+.+... ........+...+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence 479999999999999999999988765542 234455555555577899999999999976532 22223233333222
Q ss_pred -hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH--------HHHHhcCCCC
Q 014461 219 -AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV--------AEQFKHLPGY 289 (424)
Q Consensus 219 -~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~--------~~~~~~~~~~ 289 (424)
.....+++|+|++.. .++..+....+.+..+.....- .-+++|++..|...... +.+. ++.+.+..+.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~-k~~ivvfT~~d~~~~~~-~~~~l~~~~~~~l~~li~~c~~ 155 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIW-KHTIVVFTHADELEDDS-LEDYLKKESNEALQELIEKCGG 155 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGG-GGEEEEEEEGGGGTTTT-HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHH-hHhhHHhhhcccccccc-HHHHHhccCchhHhHHhhhcCC
Confidence 345689999999997 6777777777777765432111 35889999998766532 2211 2222222232
Q ss_pred CeEEEEecC------CCcChHHHHHHHHHhccCCC
Q 014461 290 ERIFMTSGL------KGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 290 ~~~~~iSA~------~g~gi~~L~~~i~~~l~~~~ 318 (424)
.++.++.+ ....+.+|++.|-+.+....
T Consensus 156 -R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 156 -RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp -CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 35656555 33568888888888776544
No 285
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=1.1e-11 Score=111.38 Aligned_cols=91 Identities=23% Similarity=0.369 Sum_probs=71.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...+|+++|.|.||||||+..+.+.... ...+..||...+.+++.+.+..+.++|.||+.+.... -...-+...
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsq-----gkGRGRQvi 134 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQ-----GKGRGRQVI 134 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhh-hhceeeeEEEeecceEEecCceEEEecCccccccccc-----CCCCCceEE
Confidence 4468999999999999999999876543 4667788999999999999999999999999865321 111223344
Q ss_pred hhcccccEEEEEEeCCC
Q 014461 218 SAVNLFEVLMVVFDVHR 234 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~ 234 (424)
...+.||++++|+|++.
T Consensus 135 avArtaDlilMvLDatk 151 (364)
T KOG1486|consen 135 AVARTADLILMVLDATK 151 (364)
T ss_pred EEeecccEEEEEecCCc
Confidence 56678999999999974
No 286
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.37 E-value=5.3e-12 Score=109.82 Aligned_cols=108 Identities=27% Similarity=0.397 Sum_probs=73.7
Q ss_pred CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccce
Q 014461 62 DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSV 140 (424)
Q Consensus 62 ~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 140 (424)
.||+|+.+.+....|..+....+..+++.++ ++.|..++ ...+...+ +......
T Consensus 48 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L--------------~~~l~~~~-----------~~~~~~~ 102 (156)
T cd01859 48 LNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKIL--------------RRTIKELA-----------KIDGKEG 102 (156)
T ss_pred EEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHH--------------HHHHHHHH-----------hhcCCCc
Confidence 3477987655555666444455666788888 88887766 11122211 1123467
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~ 197 (424)
+++++|.+|+|||||+|+|.+.....+++.+++|+.... .. .+..+.+|||||+
T Consensus 103 ~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~~~DtpGi 156 (156)
T cd01859 103 KVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQL--VK-ITSKIYLLDTPGV 156 (156)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEE--EE-cCCCEEEEECcCC
Confidence 889999999999999999998777777778887765432 22 2347899999995
No 287
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.36 E-value=3.8e-12 Score=102.27 Aligned_cols=143 Identities=20% Similarity=0.314 Sum_probs=95.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+++++|..|+|||||+++|.|...- . ..|.. +.+.+. ..+||||-.-.+. .........
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l--y---kKTQA-----ve~~d~--~~IDTPGEy~~~~--------~~Y~aL~tt 61 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL--Y---KKTQA-----VEFNDK--GDIDTPGEYFEHP--------RWYHALITT 61 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh--h---cccce-----eeccCc--cccCCchhhhhhh--------HHHHHHHHH
Confidence 47999999999999999999986542 1 11111 112111 3689999753221 122233344
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
..++|++++|-.+.++.+.....+. ..+ ..|+|-|++|+|+.++ +++....+ +....|..++|.+|+.+
T Consensus 62 ~~dadvi~~v~~and~~s~f~p~f~----~~~-----~k~vIgvVTK~DLaed-~dI~~~~~-~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 62 LQDADVIIYVHAANDPESRFPPGFL----DIG-----VKKVIGVVTKADLAED-ADISLVKR-WLREAGAEPIFETSAVD 130 (148)
T ss_pred hhccceeeeeecccCccccCCcccc----ccc-----ccceEEEEecccccch-HhHHHHHH-HHHHcCCcceEEEeccC
Confidence 6788999999998776544332222 122 3579999999999964 55544444 44444677899999999
Q ss_pred CcChHHHHHHHHHh
Q 014461 300 GAGLKALTQYLMEQ 313 (424)
Q Consensus 300 g~gi~~L~~~i~~~ 313 (424)
..|+++|+++|...
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999999998764
No 288
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.36 E-value=6.7e-12 Score=118.18 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred HHHHHHhhHHHHHHhhh--hcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceeeEEEEEEecCCccEE
Q 014461 118 LQAALERQEEEEEEVKE--EDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHEVLGVMTKADTQIC 190 (424)
Q Consensus 118 ~~~~l~~~~~~~~~~~~--~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~~~~~~~~~~~~~i~ 190 (424)
.+..++.++......|. .......+.++|.||+|||||++.+++. ....+....++..+... +...+.++.
T Consensus 81 ~~~il~~n~~~a~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~r--I~~~g~pvv 158 (290)
T PRK10463 81 EIDVLDKNNRLAERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAAR--IRATGTPAI 158 (290)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHH--HHhcCCcEE
Confidence 44455555554444443 3456788999999999999999888753 12222222222211000 111223334
Q ss_pred EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHH----HHhccC--------CCCC
Q 014461 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLI----ERMGKQ--------APPK 257 (424)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l----~~~~~~--------~~~~ 257 (424)
.+.|.+.. + ....++..++..+...+.-+++++....+..+.. .+-... -.+... ..-.
T Consensus 159 qi~tG~~C-------h-l~a~mv~~Al~~L~~~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~ 230 (290)
T PRK10463 159 QVNTGKGC-------H-LDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFA 230 (290)
T ss_pred EecCCCCC-------c-CcHHHHHHHHHHHhhcCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhh
Confidence 44443322 1 1134455555555444334444444321111000 000000 000000 0001
Q ss_pred CcEEEEEecCCCCCC-hhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 258 QKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 258 ~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+.++|+||+|+... ..++....+.+....+..+++++||++|+|+++|.+||.++.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456999999999863 235667777787777778899999999999999999998753
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.36 E-value=3.3e-11 Score=117.29 Aligned_cols=164 Identities=18% Similarity=0.301 Sum_probs=91.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
....+|+|+|.+|+|||||||+|.|-. .+.++ ...||.....+ ....-..+.+||.||+..+. ++.. .
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tG-v~etT~~~~~Y-~~p~~pnv~lWDlPG~gt~~--f~~~---~ 105 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTG-VVETTMEPTPY-PHPKFPNVTLWDLPGIGTPN--FPPE---E 105 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SS-SHSCCTS-EEE-E-SS-TTEEEEEE--GGGSS----HH---H
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCC-CCcCCCCCeeC-CCCCCCCCeEEeCCCCCCCC--CCHH---H
Confidence 457899999999999999999998722 22222 22344444333 23445679999999997542 2211 1
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCC--C-----C----Chhh-HHH-
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL--V-----T----KKKD-LLK- 278 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl--~-----~----~~~~-~~~- 278 (424)
.+.. ..+...|.+|++.+. .++..+..+...+..++ +|+++|.+|+|. . . .++. +.+
T Consensus 106 Yl~~--~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~g------K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~I 175 (376)
T PF05049_consen 106 YLKE--VKFYRYDFFIIISSE--RFTENDVQLAKEIQRMG------KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEI 175 (376)
T ss_dssp HHHH--TTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-------EEEEEE--HHHHHHHHHCC-STT--HHTHHHHH
T ss_pred HHHH--ccccccCEEEEEeCC--CCchhhHHHHHHHHHcC------CcEEEEEecccccHhhhhccCCcccCHHHHHHHH
Confidence 1111 135677988887664 56666777777777765 789999999995 1 0 1111 122
Q ss_pred ---HHHHHhcCC-CCCeEEEEecCC--CcChHHHHHHHHHhccCC
Q 014461 279 ---VAEQFKHLP-GYERIFMTSGLK--GAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 279 ---~~~~~~~~~-~~~~~~~iSA~~--g~gi~~L~~~i~~~l~~~ 317 (424)
..+.+.+.. ..+++|-||... ..++..|.+.|.+.++..
T Consensus 176 R~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 176 RENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 223333322 335799999865 466889999999988754
No 290
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=3.5e-13 Score=114.50 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=107.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..++++++|..+|||||++.+++.+-+..-.... ++....-...+...+..+.+|||.|..++. .+ +
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD----------aI--t 86 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD----------AI--T 86 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH----------HH--H
Confidence 4689999999999999999999965442111110 000000000022345567799999987541 12 2
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..++++|.+.++|+..++.. ....+.+|.+++..... .+|.++|-||+|+.++...-...++.+.+.... ..+.+|
T Consensus 87 kAyyrgaqa~vLVFSTTDr~--SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~-RlyRtS 162 (246)
T KOG4252|consen 87 KAYYRGAQASVLVFSTTDRY--SFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHK-RLYRTS 162 (246)
T ss_pred HHHhccccceEEEEecccHH--HHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhh-hhhhhh
Confidence 24567889999999987643 34556666666544332 489999999999988644333444444444333 378899
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
++...|+..+|.+|.+.+.
T Consensus 163 vked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 163 VKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 9999999999999988763
No 291
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.33 E-value=4.9e-12 Score=115.02 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=76.9
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
.+..++||||+.+-........ .+..++.. ...-++++|+|..+. +.+...+..++-..........|.|+|+||
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGs---IIte~las-s~ptvv~YvvDt~rs-~~p~tFMSNMlYAcSilyktklp~ivvfNK 190 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGS---IITETLAS-SFPTVVVYVVDTPRS-TSPTTFMSNMLYACSILYKTKLPFIVVFNK 190 (366)
T ss_pred cCEEEEcCCCceEEEEecCCcc---chHhhHhh-cCCeEEEEEecCCcC-CCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence 4589999999876432111111 12222222 223678999998532 333333333333332222235899999999
Q ss_pred CCCCCChhhHHHHHHH-------Hh-------------------cCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461 267 VDLVTKKKDLLKVAEQ-------FK-------------------HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS 320 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~~~-------~~-------------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~ 320 (424)
+|+.+.. -..+++.. +. +.+.....+-|||.+|.|.++++..+.+.+.+....
T Consensus 191 ~Dv~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ 269 (366)
T KOG1532|consen 191 TDVSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEE 269 (366)
T ss_pred ccccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHH
Confidence 9998753 22222221 11 112223589999999999999999999888665544
Q ss_pred CCCC
Q 014461 321 EDPL 324 (424)
Q Consensus 321 ~~~~ 324 (424)
|-|.
T Consensus 270 ykp~ 273 (366)
T KOG1532|consen 270 YKPE 273 (366)
T ss_pred hhhH
Confidence 4443
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.31 E-value=1.6e-11 Score=131.75 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=76.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee---------cCC------CCceeeEEEEEE----ecCCccEEEEeCCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV---------SRK------TNTTTHEVLGVM----TKADTQICIFDTPGL 197 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~---------~~~------~~tt~~~~~~~~----~~~~~~i~l~DtpG~ 197 (424)
.+..+|+++|+.++|||||+++|+...-... .+. .+.|.......+ ...+.++.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3567899999999999999999974221100 000 112222211111 224678999999998
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
.++ ...+...+..+|++++|+|+..+.......++...... +.|.++++||+|+..
T Consensus 98 ~df------------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDF------------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE------RVKPVLFINKVDRLI 153 (731)
T ss_pred cCh------------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc------CCCeEEEEECchhhc
Confidence 754 22334456778999999999887766665555544333 256799999999863
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.31 E-value=2e-11 Score=118.24 Aligned_cols=169 Identities=11% Similarity=0.183 Sum_probs=104.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC----cce-----------eecCCCC---ceeeEEE---EE--Ee---cCCccE
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT----KVA-----------AVSRKTN---TTTHEVL---GV--MT---KADTQI 189 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~----~~~-----------~~~~~~~---tt~~~~~---~~--~~---~~~~~i 189 (424)
....+.|+++|+.|+|||||+|+|.+. ..+ .+++.+| +|+++.. .. +. .-..++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345688999999999999999999987 555 5677777 7766654 11 11 123679
Q ss_pred EEEeCCCcccCCCCCChhhhh------------------hHHHHHHhhcc-cccEEEEEE-eCC------CCCCCchHHH
Q 014461 190 CIFDTPGLMLNKSGYSHKDVK------------------VRVESAWSAVN-LFEVLMVVF-DVH------RHLTSPDSRV 243 (424)
Q Consensus 190 ~l~DtpG~~~~~~~~~~~~~~------------------~~~~~~~~~~~-~aD~vl~Vv-D~~------~~~~~~~~~~ 243 (424)
.++||+|+.... .+.+.... ..--.+...+. .+|+.++|. |.+ ......+..+
T Consensus 94 rlIDcvG~~v~G-alG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 94 RLVDCVGYTVKG-ALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEECCCcccCC-CccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 999999997532 12211110 01111334455 789999998 775 2333344455
Q ss_pred HHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC--CcChHHHHHHHHHhc
Q 014461 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK--GAGLKALTQYLMEQA 314 (424)
Q Consensus 244 ~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~--g~gi~~L~~~i~~~l 314 (424)
...|++. ++|+++|+||+|-... ......+.+...++.+ ++++|+.. ...|..+++.+...+
T Consensus 173 i~eLk~~------~kPfiivlN~~dp~~~--et~~l~~~l~eky~vp-vl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 173 IEELKEL------NKPFIILLNSTHPYHP--ETEALRQELEEKYDVP-VLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred HHHHHhc------CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCc-eEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 5556654 4899999999994322 2333344555556654 78888743 334455554444333
No 294
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=7e-12 Score=106.44 Aligned_cols=163 Identities=20% Similarity=0.229 Sum_probs=103.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeec----CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.|+++|..|+|||||+.++......... ....+|.....+.....+..+.|||..|... .
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~-------------l 82 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQES-------------L 82 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHH-------------H
Confidence 3577999999999999999987643221111 1222344444555556688899999999753 2
Q ss_pred HHHHh-hcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHHhcCCC
Q 014461 214 ESAWS-AVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPG 288 (424)
Q Consensus 214 ~~~~~-~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~ 288 (424)
+..|. .+..++++++++|++++-.... ..+...+..-. ..+.|+++.+||.|+.+.. +++...... .+..+
T Consensus 83 rSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~---leg~p~L~lankqd~q~~~~~~El~~~~~~-~e~~~ 158 (197)
T KOG0076|consen 83 RSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEK---LEGAPVLVLANKQDLQNAMEAAELDGVFGL-AELIP 158 (197)
T ss_pred HHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH---hcCCchhhhcchhhhhhhhhHHHHHHHhhh-hhhcC
Confidence 23333 3466899999999976322111 12223332211 2258999999999997642 122222221 12221
Q ss_pred --CCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 289 --YERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 289 --~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..++.||||.+|+||++-++|+...++..
T Consensus 159 ~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 159 RRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 22589999999999999999999988655
No 295
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3e-11 Score=117.35 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=120.0
Q ss_pred EEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.|+..|+--.|||||+.++.|... .....+-|+|.+...+.+..++..+.|+|.||+.++ +.....
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~------------i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF------------ISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH------------HHHHHh
Confidence 478889999999999999998543 234556688888877778888889999999997533 566667
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCCCeEEEEe
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTS 296 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iS 296 (424)
.+...|.+++|+|+++++..+..+.+..+..++. ...++|+||+|..+. +.+....+++... +...++|++|
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi-----~~giivltk~D~~d~-~r~e~~i~~Il~~l~l~~~~i~~~s 143 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLLGI-----KNGIIVLTKADRVDE-ARIEQKIKQILADLSLANAKIFKTS 143 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHhcCC-----CceEEEEeccccccH-HHHHHHHHHHHhhcccccccccccc
Confidence 7788899999999988888877777777777663 236999999999875 2333333333322 2334689999
Q ss_pred cCCCcChHHHHHHHHHhc
Q 014461 297 GLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l 314 (424)
+++|+||++|.+.|.+..
T Consensus 144 ~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 144 AKTGRGIEELKNELIDLL 161 (447)
T ss_pred cccCCCHHHHHHHHHHhh
Confidence 999999999999999877
No 296
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.9e-10 Score=116.88 Aligned_cols=219 Identities=19% Similarity=0.288 Sum_probs=137.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE------------------ecCCccEEEEeCCCc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM------------------TKADTQICIFDTPGL 197 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~------------------~~~~~~i~l~DtpG~ 197 (424)
..+++-++|+|+..+|||-|+..+.+..+- .+...+.|...-..++ ...-..+.+|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVq-egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQ-EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccc-cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 456788999999999999999999986553 2333333322111111 112235889999997
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK----- 272 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~----- 272 (424)
..+.+ .++ .....||++|+|+|+.+++..+...-+.+|+.. +.|+|+++||+|..-.
T Consensus 551 EsFtn----------lRs--rgsslC~~aIlvvdImhGlepqtiESi~lLR~r------ktpFivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 551 ESFTN----------LRS--RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR------KTPFIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred hhhhh----------hhh--ccccccceEEEEeehhccCCcchhHHHHHHHhc------CCCeEEeehhhhhhcccccCC
Confidence 65532 111 234569999999999988877766666666653 4899999999997532
Q ss_pred hhhHH-------------------HHHHHHhcC-------------CCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461 273 KKDLL-------------------KVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS 320 (424)
Q Consensus 273 ~~~~~-------------------~~~~~~~~~-------------~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~ 320 (424)
...+. .++.+|.+. ..+..++|+||.+|+||.+|+-+|++....
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk---- 688 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK---- 688 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH----
Confidence 11111 111122211 122368999999999999999999876521
Q ss_pred CCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEEEEe--eCCCcccEEeccCCchHHHH
Q 014461 321 EDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLIT--NKLSQRKILVGKNGSKIGRI 398 (424)
Q Consensus 321 ~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~s~k~ivig~~g~~i~~i 398 (424)
..-+++. ++. .++..+++.+-.++-...|+..+.. -+++..-+|.|-+|.++..|
T Consensus 689 -----------------~m~~kl~-y~~-----ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpIvTtI 745 (1064)
T KOG1144|consen 689 -----------------TMVEKLA-YVD-----EVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPIVTTI 745 (1064)
T ss_pred -----------------HHHHHHh-hhh-----heeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCchhHHH
Confidence 0112222 121 2445555556555534455544432 25788889999999998877
Q ss_pred HH
Q 014461 399 GV 400 (424)
Q Consensus 399 ~~ 400 (424)
..
T Consensus 746 Ra 747 (1064)
T KOG1144|consen 746 RA 747 (1064)
T ss_pred HH
Confidence 64
No 297
>PRK00098 GTPase RsgA; Reviewed
Probab=99.30 E-value=2.6e-12 Score=123.53 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=90.9
Q ss_pred CCccCCC-CCCCCCC-CccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 014461 55 FRIPTID-DPQNNNA-AKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEE 131 (424)
Q Consensus 55 ar~p~~~-~~k~Dl~-~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 131 (424)
..+|++. .||+||. +.+....|...+...+..+++.++ ++.|...+ . ..
T Consensus 110 ~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L-----------------~-~~---------- 161 (298)
T PRK00098 110 NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDEL-----------------K-PL---------- 161 (298)
T ss_pred CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH-----------------H-hh----------
Confidence 3345555 6688997 444456788888888888888888 77787666 1 11
Q ss_pred hhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-------CceeeEEEEEEecCCccEEEEeCCCcccCCCC-
Q 014461 132 VKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-------NTTTHEVLGVMTKADTQICIFDTPGLMLNKSG- 203 (424)
Q Consensus 132 ~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-------~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~- 203 (424)
..+..++++|++|||||||+|+|++.....++..+ +||+......+.. ...++||||+......
T Consensus 162 -----l~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~~~~~~ 233 (298)
T PRK00098 162 -----LAGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG---GGLLIDTPGFSSFGLHD 233 (298)
T ss_pred -----ccCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC---CcEEEECCCcCccCCCC
Confidence 12456899999999999999999986543333222 3665544433322 2389999999854321
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
....++...+.........|- .-|.+ +..++...+.+.++
T Consensus 234 ~~~~~~~~~f~~~~~~~~~c~----f~~c~-h~~ep~c~v~~a~~ 273 (298)
T PRK00098 234 LEAEELEHYFPEFRPLSGDCK----FRNCT-HLHEPGCAVKAAVE 273 (298)
T ss_pred CCHHHHHHHHHHHHHHhCCCC----CCCCc-CCCCCCChHHHHHH
Confidence 222333333333333222211 12332 44455556655554
No 298
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.30 E-value=6.7e-11 Score=98.25 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=112.4
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
..+..+|+++|.-++|||+++..|+-.....-.....|..+.....+..+ ..++.|.||.|.......+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL-------- 77 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL-------- 77 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh--------
Confidence 35678999999999999999999875544322333333333333333322 3468999999987542111
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
...++.-+|+.++|++..+.-+... ..+..++.... .....|+++++||+|+.++.....+..+.|+......
T Consensus 78 ---prhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~K--dKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvk- 151 (198)
T KOG3883|consen 78 ---PRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHK--DKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVK- 151 (198)
T ss_pred ---hHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhcc--ccccccEEEEechhhcccchhcCHHHHHHHHhhhhee-
Confidence 1234556799999999865322211 12334444422 2224899999999999877666667777887665554
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.++++|.....+-+.|.++...+..
T Consensus 152 l~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 152 LWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred EEEEEeccchhhhhHHHHHHHhccC
Confidence 8999999999999999999988743
No 299
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.30 E-value=1.8e-11 Score=110.12 Aligned_cols=56 Identities=29% Similarity=0.374 Sum_probs=45.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcc--------eeecCCCCceeeEEEEEEecCCccEEEEeCCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKV--------AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGL 197 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~--------~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~ 197 (424)
...++++|.+|||||||+|+|.+... ..++..++||++.....+. ..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 46799999999999999999997532 3567888999987765442 25799999996
No 300
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=7.2e-11 Score=96.65 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=102.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+++.+|-.++||||++..|.-.+...+-+..|.. ...+++.+..+.+||..|... ++-.
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn----vetVtykN~kfNvwdvGGqd~-------------iRpl 77 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN----VETVTYKNVKFNVWDVGGQDK-------------IRPL 77 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCccccccccee----EEEEEeeeeEEeeeeccCchh-------------hhHH
Confidence 35688999999999999999999865543232222222 233567788999999999753 2223
Q ss_pred Hh-hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CC-Ce
Q 014461 217 WS-AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GY-ER 291 (424)
Q Consensus 217 ~~-~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~-~~ 291 (424)
|. ++....++|||+|+.+. ...++.-.++-..++.....+.|+++..||.|+..... ..+ ++.+.+.. +. -.
T Consensus 78 WrhYy~gtqglIFV~Dsa~~-dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-pqe-i~d~leLe~~r~~~W~ 154 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADR-DRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-PQE-IQDKLELERIRDRNWY 154 (180)
T ss_pred HHhhccCCceEEEEEeccch-hhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-HHH-HHHHhccccccCCccE
Confidence 32 35677899999998754 22222222222223333333578999999999987521 111 22221111 11 14
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+.|+||.+|.|+.+-+.||.+.+.
T Consensus 155 vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 155 VQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred eeccccccchhHHHHHHHHHhhcc
Confidence 789999999999999999988764
No 301
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.29 E-value=9.6e-11 Score=112.93 Aligned_cols=157 Identities=20% Similarity=0.274 Sum_probs=90.3
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------e----------E---EEEE------
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------H----------E---VLGV------ 181 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------~----------~---~~~~------ 181 (424)
........|+++|++|+|||||++.+.. .++..+...+..+. + . ....
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHL 108 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccc
Confidence 3445678899999999999999999764 22222111111100 0 0 0000
Q ss_pred -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
+...+.+++|+||||..... . ..+..+|.++++.+... .. .+.....
T Consensus 109 ~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e-------~--------~i~~~aD~i~vv~~~~~--~~---el~~~~~ 168 (300)
T TIGR00750 109 GGLSQATRELILLLDAAGYDVIIVETVGVGQSE-------V--------DIANMADTFVVVTIPGT--GD---DLQGIKA 168 (300)
T ss_pred cchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh-------h--------HHHHhhceEEEEecCCc--cH---HHHHHHH
Confidence 11236789999999976321 0 12345688888765421 11 1111112
Q ss_pred HhccCCCCCCcEEEEEecCCCCCChhhH--HH----HHHHHhcC-CCC-CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDL--LK----VAEQFKHL-PGY-ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~--~~----~~~~~~~~-~~~-~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+. ..|.++|+||+|+....... .. ....+... .+. .+++++||++|.|+++|+++|.+...
T Consensus 169 ~l~-----~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 169 GLM-----EIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHh-----hhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 221 36789999999998642111 00 01111111 111 35899999999999999999998753
No 302
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.29 E-value=8.2e-12 Score=119.44 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=92.6
Q ss_pred ccCCC-CCCCCCCCccChhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 014461 57 IPTID-DPQNNNAAKKQEPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKE 134 (424)
Q Consensus 57 ~p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 134 (424)
+|++. .||+||.+......|..++...++.+++.++ ++.|...+ ...+
T Consensus 110 ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L------------------~~~L------------ 159 (287)
T cd01854 110 IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDEL------------------REYL------------ 159 (287)
T ss_pred CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHH------------------Hhhh------------
Confidence 33344 5588998765556677777778888888888 77776655 1111
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeec-------CCCCceeeEEEEEEecCCccEEEEeCCCcccCC-CCCCh
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK-SGYSH 206 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~-~~~~~ 206 (424)
....++++|++|||||||+|.|++.....++ ...+||+......+... ..++||||+..+. .....
T Consensus 160 ---~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~~ 233 (287)
T cd01854 160 ---KGKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFGLLHIDP 233 (287)
T ss_pred ---ccceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccCCccCCH
Confidence 1256899999999999999999986543322 23346666544333222 3799999997654 23333
Q ss_pred hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHH
Q 014461 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIER 249 (424)
Q Consensus 207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~ 249 (424)
.++...+.........| -.-|++ +..++...+.+.++.
T Consensus 234 ~~~~~~f~~~~~~~~~C----~F~~C~-H~~Ep~Cav~~av~~ 271 (287)
T cd01854 234 EELAHYFPEFRELAGQC----KFRDCT-HTNEPGCAVKAAVEA 271 (287)
T ss_pred HHHHHHhHHHHHHhCCC----CCCCCc-CCCCCCCHHHHHHHc
Confidence 33333333333323222 122554 445666677766653
No 303
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.28 E-value=3.8e-12 Score=109.74 Aligned_cols=93 Identities=25% Similarity=0.285 Sum_probs=61.1
Q ss_pred hhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCCh
Q 014461 74 PTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGK 152 (424)
Q Consensus 74 ~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GK 152 (424)
++|...|+..|+.+++.++ ++.|...+ +.. .+...++++|++||||
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l------------------~~~---------------l~~k~~vl~G~SGvGK 48 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEEL------------------KEL---------------LKGKTSVLLGQSGVGK 48 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHH------------------HHH---------------HTTSEEEEECSTTSSH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHH------------------HHH---------------hcCCEEEEECCCCCCH
Confidence 5799999999999999999 78887766 111 1236789999999999
Q ss_pred hHHHHhHhCCccee---e----cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461 153 SSIINYMVGTKVAA---V----SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 153 StLin~l~~~~~~~---~----~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
|||+|+|.+..... + ....+||+......+. ....++||||+.....
T Consensus 49 SSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~---~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 49 SSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP---DGGYIIDTPGFRSFGL 102 (161)
T ss_dssp HHHHHHHHTSS----S--------------SEEEEEET---TSEEEECSHHHHT--G
T ss_pred HHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC---CCcEEEECCCCCcccc
Confidence 99999999863221 2 2333566665544442 2459999999987643
No 304
>PTZ00416 elongation factor 2; Provisional
Probab=99.27 E-value=3.3e-11 Score=130.84 Aligned_cols=116 Identities=20% Similarity=0.214 Sum_probs=79.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC---------------CceeeEEEEEEecC----------CccEEE
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTKA----------DTQICI 191 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~---------------~tt~~~~~~~~~~~----------~~~i~l 191 (424)
.+..+|+++|+.++|||||+++|+........... +.|.......+.+. +..++|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 45669999999999999999999863221111111 12222111112222 567999
Q ss_pred EeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
+||||+.++ ...+...+..+|++++|+|+..+.......++..+... +.|+++++||+|+.
T Consensus 97 iDtPG~~~f------------~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~------~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDF------------SSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE------RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhH------------HHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc------CCCEEEEEEChhhh
Confidence 999998643 33345567889999999999988877776666655543 37899999999997
No 305
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.27 E-value=5.6e-11 Score=129.22 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=79.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC---------------CceeeEEEEEEec----------------
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT---------------NTTTHEVLGVMTK---------------- 184 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~---------------~tt~~~~~~~~~~---------------- 184 (424)
..+..+|+++|+.++|||||+++|+...-....... +.|.......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345779999999999999999999853211111111 2222221111222
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.+..++++||||+.++ .......+..+|++++|+|+..+.......++..+... +.|+++++
T Consensus 96 ~~~~inliDtPGh~dF------------~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~------~~p~i~~i 157 (843)
T PLN00116 96 NEYLINLIDSPGHVDF------------SSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE------RIRPVLTV 157 (843)
T ss_pred CceEEEEECCCCHHHH------------HHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC------CCCEEEEE
Confidence 2567899999998654 33334556778999999999988877766666555543 37899999
Q ss_pred ecCCCC
Q 014461 265 NKVDLV 270 (424)
Q Consensus 265 NK~Dl~ 270 (424)
||+|+.
T Consensus 158 NK~D~~ 163 (843)
T PLN00116 158 NKMDRC 163 (843)
T ss_pred ECCccc
Confidence 999987
No 306
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.27 E-value=6.7e-11 Score=128.71 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=90.7
Q ss_pred CChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC------------------CccEEEEeCCCcccCCCCCChhhhhh
Q 014461 150 AGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------------DTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 150 ~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~------------------~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
++||||+.+|.+..++. ....+.|.+.-...+... -..+.||||||+..+. .
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~---------~ 541 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFT---------S 541 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHH---------H
Confidence 45999999999887752 333444544322222211 1248999999965431 1
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-------------hHHH
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-------------DLLK 278 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-------------~~~~ 278 (424)
+. ...+..+|++++|+|+++++..........+... +.|+++|+||+|+..... +...
T Consensus 542 lr---~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~------~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 542 LR---KRGGSLADLAVLVVDINEGFKPQTIEAINILRQY------KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred HH---HhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc------CCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 11 1235668999999999877665555555555543 378999999999964210 0011
Q ss_pred HHH-----------HHh-------------cCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 279 VAE-----------QFK-------------HLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 279 ~~~-----------~~~-------------~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
..+ .+. +..+..++++|||++|+|+++|.++|...
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 111 111 12234479999999999999999988654
No 307
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.27 E-value=3.6e-10 Score=104.49 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=76.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE----------------------------------------
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE---------------------------------------- 177 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~---------------------------------------- 177 (424)
....++++|+.|+||||+++++.|..+...+... .|+.+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~-~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCc-ccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 4568999999999999999999986422111110 01000
Q ss_pred ------------EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH-HHHhhcc-cccEEEEEEeCCCCCCCch-HH
Q 014461 178 ------------VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE-SAWSAVN-LFEVLMVVFDVHRHLTSPD-SR 242 (424)
Q Consensus 178 ------------~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~-~aD~vl~VvD~~~~~~~~~-~~ 242 (424)
...+....-..+.++||||+......-........+. .+..++. ..+++++|+|+...+...+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0001112235689999999964311111112222222 2344455 4569999999976665544 24
Q ss_pred HHHHHHHhccCCCCCCcEEEEEecCCCCCChhh
Q 014461 243 VIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD 275 (424)
Q Consensus 243 ~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~ 275 (424)
+.+++... ..|+++|+||+|..+...+
T Consensus 184 ia~~ld~~------~~rti~ViTK~D~~~~~~~ 210 (240)
T smart00053 184 LAKEVDPQ------GERTIGVITKLDLMDEGTD 210 (240)
T ss_pred HHHHHHHc------CCcEEEEEECCCCCCccHH
Confidence 44444432 3689999999999875433
No 308
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.26 E-value=3.9e-10 Score=109.66 Aligned_cols=162 Identities=16% Similarity=0.246 Sum_probs=107.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
.-.+|+|+.+-..|||||+..|+...-. ......+.|.-.....+.+.+..++++||||+-++..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 3468999999999999999999853210 0111224444443344678899999999999876642
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHH
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA 280 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~ 280 (424)
.+++. +...|.+++++|+..+.-.+...+++---+. +.+-|+|+||+|....+. .+.+..
T Consensus 84 ---------EVERv---l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~------gL~PIVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 84 ---------EVERV---LSMVDGVLLLVDASEGPMPQTRFVLKKALAL------GLKPIVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred ---------hhhhh---hhhcceEEEEEEcccCCCCchhhhHHHHHHc------CCCcEEEEeCCCCCCCCHHHHHHHHH
Confidence 34444 4456999999999877665555544322222 245688999999987542 222322
Q ss_pred HHHh------cCCCCCeEEEEecCCCc----------ChHHHHHHHHHhccCCC
Q 014461 281 EQFK------HLPGYERIFMTSGLKGA----------GLKALTQYLMEQAVQRP 318 (424)
Q Consensus 281 ~~~~------~~~~~~~~~~iSA~~g~----------gi~~L~~~i~~~l~~~~ 318 (424)
+-|. +...|+ ++..||+.|. ++..||+.|.++++...
T Consensus 146 DLf~~L~A~deQLdFP-ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 146 DLFVELGATDEQLDFP-IVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HHHHHhCCChhhCCCc-EEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 2232 223555 8889998874 57889999999886543
No 309
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.25 E-value=2.3e-11 Score=130.38 Aligned_cols=117 Identities=19% Similarity=0.216 Sum_probs=77.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc---------------ceeecCCCCceeeEEE----EEEecCCccEEEEeCCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK---------------VAAVSRKTNTTTHEVL----GVMTKADTQICIFDTPGL 197 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~---------------~~~~~~~~~tt~~~~~----~~~~~~~~~i~l~DtpG~ 197 (424)
....+|+++|+.++|||||+++|+... +.......+.|..... ..+.+.+.++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 346899999999999999999997421 0000011223332211 114456788999999998
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
..+. ..+...+..+|++++|+|+..+.......+...+... +.|.++++||+|...
T Consensus 97 ~~f~------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFG------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE------NVKPVLFINKVDRLI 152 (720)
T ss_pred cccH------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc------CCCEEEEEEChhccc
Confidence 7541 2233456778999999999877666555554444332 367889999999864
No 310
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.8e-10 Score=101.47 Aligned_cols=161 Identities=16% Similarity=0.187 Sum_probs=95.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
....|.++|..++|||+|+..|..+... ...|......+.+..+...+.++|.||+..- ...+...+
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl---------R~kl~e~~ 103 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----GTVTSIEPNEATYRLGSENVTLVDLPGHSRL---------RRKLLEYL 103 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc----CeeeeeccceeeEeecCcceEEEeCCCcHHH---------HHHHHHHc
Confidence 3467999999999999999999865321 1122233334445556666899999997532 12222333
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCCh--hhHHH----HHHHHhc---
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKK--KDLLK----VAEQFKH--- 285 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~--~~~~~----~~~~~~~--- 285 (424)
..-..+-+++||+|+..- ...-..+.+++-..-.. .....|++++.||.|+...+ +.+.+ .+..+..
T Consensus 104 ~~~~~akaiVFVVDSa~f-~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs 182 (238)
T KOG0090|consen 104 KHNYSAKAIVFVVDSATF-LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS 182 (238)
T ss_pred cccccceeEEEEEecccc-chhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 333467899999998532 22222333333222111 23347899999999996542 22221 1111110
Q ss_pred ---------------------------CC-CCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 286 ---------------------------LP-GYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 286 ---------------------------~~-~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.. ....+.+.|+++| +++++.+||.+.
T Consensus 183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 00 0114678888888 899999998765
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.23 E-value=1.7e-11 Score=113.72 Aligned_cols=120 Identities=22% Similarity=0.236 Sum_probs=59.0
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
.+.++||||+.+.. .+... .......+ ...-++++++|+.. .......+..++-.......-+.|.|.|+|
T Consensus 92 ~y~l~DtPGQiElf---~~~~~---~~~i~~~L~~~~~~~~v~LvD~~~-~~~~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELF---THSDS---GRKIVERLQKNGRLVVVFLVDSSF-CSDPSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHH---HHSHH---HHHHHHTSSS----EEEEEE-GGG--SSHHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEE---Eechh---HHHHHHHHhhhcceEEEEEEeccc-ccChhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 68999999998642 11221 22222222 23458899999853 333333322222221111111489999999
Q ss_pred cCCCCCCh----------------------hhHHHHHHHHhcCCCCC-eEEEEecCCCcChHHHHHHHHHhc
Q 014461 266 KVDLVTKK----------------------KDLLKVAEQFKHLPGYE-RIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 266 K~Dl~~~~----------------------~~~~~~~~~~~~~~~~~-~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
|+|+.+.. ..+...+..+-..++.. .++++|+.+++|+++|+..|-+.+
T Consensus 165 K~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 165 KIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 99998721 00111111222334544 799999999999999999887654
No 312
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.23 E-value=1.9e-10 Score=117.50 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=84.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
...-..+|+++|.+|+||||++|+|+|.....++.. ++||+ .........+.++.++||||+.+..... .......
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq--~~neeIL 190 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQ--SKNEKIL 190 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccch--HHHHHHH
Confidence 344568999999999999999999999887666654 45554 3333334567889999999998653211 1111222
Q ss_pred HHHHhhc--ccccEEEEEEeCCCCCCC-chHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 214 ESAWSAV--NLFEVLMVVFDVHRHLTS-PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 214 ~~~~~~~--~~aD~vl~VvD~~~~~~~-~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
......+ ...|++|+|...+..... .+..+.+.+.++.....- .-+|||+|..|...
T Consensus 191 k~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iw-k~tIVVFThgD~lp 250 (763)
T TIGR00993 191 SSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIW-FNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhH-cCEEEEEeCCccCC
Confidence 2222222 247999999877532222 233455666554432111 35899999999875
No 313
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-10 Score=111.96 Aligned_cols=89 Identities=21% Similarity=0.319 Sum_probs=68.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------C-------ccEEEEeCCCcccC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------D-------TQICIFDTPGLMLN 200 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------~-------~~i~l~DtpG~~~~ 200 (424)
.++++|||.||||||||+|+++... +...++|.||.++..++.... . .++.|+|.+|+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999888 668999999998877763321 1 24789999999754
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
.+ .-...-...+..++.+|++++|+|++
T Consensus 81 As-----~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 AS-----KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cc-----cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 32 01122334456788999999999997
No 314
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.21 E-value=7.8e-11 Score=117.46 Aligned_cols=161 Identities=20% Similarity=0.242 Sum_probs=105.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCccee-ecCC-CCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRK-TNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~-~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+..+|+++|..|+||||||-+|+...+.. +.+. +..+. ..-++.+..+..++||+.-.+..
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I---PadvtPe~vpt~ivD~ss~~~~~------------ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI---PADVTPENVPTSIVDTSSDSDDR------------ 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc---CCccCcCcCceEEEecccccchh------------
Confidence 4567899999999999999999999877642 1111 11111 12244566678999998543221
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCC--chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----hHHHHHHHHhcC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTS--PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHL 286 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~--~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~ 286 (424)
......++.||++++|+++++..+- -...|+-.+++.... ....|+|+|+||+|...... ....++.++.+.
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~-~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~Ei 149 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGD-YHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEI 149 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCC-CccCCEEEEeeccCCccccccchhHHHHHHHHHhHHH
Confidence 1113457788999999988753222 112344444443321 23589999999999976532 244555555533
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
...|+|||++-.++.++|-+-.+.+.
T Consensus 150 ---EtciecSA~~~~n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 150 ---ETCIECSALTLANVSELFYYAQKAVI 175 (625)
T ss_pred ---HHHHhhhhhhhhhhHhhhhhhhheee
Confidence 45799999999999999988776653
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.20 E-value=1.4e-10 Score=101.91 Aligned_cols=113 Identities=24% Similarity=0.366 Sum_probs=66.6
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE--------------------------------------------
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-------------------------------------------- 177 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-------------------------------------------- 177 (424)
|+|+|..++|||||+|+|+|.....++..+.|....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999997754433332221100
Q ss_pred -----------EEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461 178 -----------VLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (424)
Q Consensus 178 -----------~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~ 246 (424)
...........+.|+||||+........ ..+...+..+|++++|++++..+...+. ..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~--------~~~~~~~~~~d~vi~V~~~~~~~~~~~~--~~l 150 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT--------EITEEYLPKADVVIFVVDANQDLTESDM--EFL 150 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS--------HHHHHHHSTTEEEEEEEETTSTGGGHHH--HHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH--------HHHHHhhccCCEEEEEeccCcccchHHH--HHH
Confidence 0001112234588999999975322111 2233445789999999999865544432 222
Q ss_pred HHHhccCCCCCCcEEEEEecC
Q 014461 247 IERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 247 l~~~~~~~~~~~p~ilV~NK~ 267 (424)
.+..... ...+++|+||+
T Consensus 151 ~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTT---CSSEEEEEE-G
T ss_pred HHHhcCC---CCeEEEEEcCC
Confidence 2222222 23489999995
No 316
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.4e-10 Score=106.38 Aligned_cols=165 Identities=18% Similarity=0.284 Sum_probs=102.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee-------------------ecCCCCcee---eEEEEEEecC------Ccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-------------------VSRKTNTTT---HEVLGVMTKA------DTQ 188 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-------------------~~~~~~tt~---~~~~~~~~~~------~~~ 188 (424)
....+|+.+|+-..|||||..+|.|-.... +...+.+.. ......+... -..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 357899999999999999999999832110 000111110 0000001111 124
Q ss_pred EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecC
Q 014461 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~ 267 (424)
+.|+|.||+.- .+...++...--|+.++|++++.+...+.. +-+-.|+-++. ..+|+|-||+
T Consensus 88 VSfVDaPGHe~------------LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi-----k~iiIvQNKI 150 (415)
T COG5257 88 VSFVDAPGHET------------LMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI-----KNIIIVQNKI 150 (415)
T ss_pred EEEeeCCchHH------------HHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc-----ceEEEEeccc
Confidence 78999999741 233344445556999999999876544432 22233443332 4589999999
Q ss_pred CCCCChhhHHHHHHHHhcC-----CCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461 268 DLVTKKKDLLKVAEQFKHL-----PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
|++..+..+ +..+++++. ....+++|+||..+.|||.|+++|.+.++....
T Consensus 151 DlV~~E~Al-E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 151 DLVSRERAL-ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred ceecHHHHH-HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 999854322 222232221 122369999999999999999999999976543
No 317
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.19 E-value=1.5e-10 Score=109.03 Aligned_cols=164 Identities=19% Similarity=0.293 Sum_probs=108.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcce----------e----------------------ecCCCCceeeEEEEEEecC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA----------A----------------------VSRKTNTTTHEVLGVMTKA 185 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~----------~----------------------~~~~~~tt~~~~~~~~~~~ 185 (424)
..++++.+|.-.-||||||-+|+..... . .....|.|.+.....+.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4578999999999999999999852211 0 1112356666666666667
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
..++++.||||+..+. ++.-.....||+.++++|+..++.++...-.-...-++. ..+++++|
T Consensus 85 KRkFIiADTPGHeQYT------------RNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGI-----rhvvvAVN 147 (431)
T COG2895 85 KRKFIIADTPGHEQYT------------RNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGI-----RHVVVAVN 147 (431)
T ss_pred cceEEEecCCcHHHHh------------hhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCC-----cEEEEEEe
Confidence 7889999999987542 233345677899999999987665554432222222331 34899999
Q ss_pred cCCCCCChh-hHHHHHHH---HhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCC
Q 014461 266 KVDLVTKKK-DLLKVAEQ---FKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLT 325 (424)
Q Consensus 266 K~Dl~~~~~-~~~~~~~~---~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~ 325 (424)
||||++-.+ ....+..+ |....++. .++|+||+.|.|+-. .-...||+..+..
T Consensus 148 KmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~-------~s~~mpWY~GptL 206 (431)
T COG2895 148 KMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS-------KSENMPWYKGPTL 206 (431)
T ss_pred eecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc-------cccCCCcccCccH
Confidence 999997543 33333333 33444432 689999999999753 2334577766653
No 318
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.17 E-value=1.1e-10 Score=102.67 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=65.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE--ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM--TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~--~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
...|+++|++|+|||+|+..|..+....+ .|......... ...+..+.++|+||+..-+ ..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T----~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~~~ 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT----VTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLLDE 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B-------SSEEEECCGSSTCGTCECEEEETT-HCCC---------HHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe----eccccCCceEEeecCCCCEEEEEECCCcHHHH---------HHHHHh
Confidence 45699999999999999999997643211 11111111111 1245679999999986432 112222
Q ss_pred HhhcccccEEEEEEeCCCCCCCchH----HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDS----RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~----~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
+.....+.+||||+|++. ...... .+.+.+...... ....|+++++||.|+...
T Consensus 70 ~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 70 LKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred hhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 224667899999999863 111112 233333332211 234899999999999764
No 319
>PRK13796 GTPase YqeH; Provisional
Probab=99.17 E-value=1.3e-10 Score=114.82 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=79.9
Q ss_pred CCcEEEEeCCCC-------------ccCCC-CCCCCCCCcc----ChhhHHHHHHh-cCC---eEEEeec-cccccchhh
Q 014461 45 DCDSVFDSSYFR-------------IPTID-DPQNNNAAKK----QEPTWDEKYRE-RTD---RIVFGEE-AQKGKLRIF 101 (424)
Q Consensus 45 ~~d~vie~~dar-------------~p~~~-~~k~Dl~~~~----~~~~~~~~~~~-~~~---~i~f~~~-~~~~~~~l~ 101 (424)
.+-+|+++.|.. .|++. .||+||.+++ ....|...+.+ .|. .+++.++ ++.|..++
T Consensus 72 lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL- 150 (365)
T PRK13796 72 LVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDEL- 150 (365)
T ss_pred EEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHH-
Confidence 456666666644 23333 4588997643 34567665543 343 4677777 77776665
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceee
Q 014461 102 QEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTH 176 (424)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~ 176 (424)
++...+. ....++.++|.+|||||||+|+|++. +...++..||||+.
T Consensus 151 ----------------~~~I~~~------------~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~ 202 (365)
T PRK13796 151 ----------------LEAIEKY------------REGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD 202 (365)
T ss_pred ----------------HHHHHHh------------cCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce
Confidence 1111100 12357999999999999999999853 24457899999998
Q ss_pred EEEEEEecCCccEEEEeCCCccc
Q 014461 177 EVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 177 ~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
.....+. ....++||||+..
T Consensus 203 ~~~~~l~---~~~~l~DTPGi~~ 222 (365)
T PRK13796 203 KIEIPLD---DGSFLYDTPGIIH 222 (365)
T ss_pred eEEEEcC---CCcEEEECCCccc
Confidence 7654332 2248999999964
No 320
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.16 E-value=7.2e-11 Score=106.60 Aligned_cols=162 Identities=22% Similarity=0.307 Sum_probs=113.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+|+++|.|.+|||||+..|.|... .+..+.+||..++.+...+.+..+.+.|.||+.+... +-...-+.....
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegak-----dgkgrg~qviav 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAK-----DGKGRGKQVIAV 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhcccc-----cCCCCccEEEEE
Confidence 4899999999999999999998654 4778888998888898889999999999999986532 112223334456
Q ss_pred cccccEEEEEEeCCCCCCCc--------------------------------------h-HHHHHHHHHhccCC------
Q 014461 220 VNLFEVLMVVFDVHRHLTSP--------------------------------------D-SRVIRLIERMGKQA------ 254 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~--------------------------------------~-~~~~~~l~~~~~~~------ 254 (424)
.+.|+++++|+|+..+++.. + ..+...+.+.....
T Consensus 134 artcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr 213 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALR 213 (358)
T ss_pred eecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeee
Confidence 67889999999986533210 0 01111122211100
Q ss_pred ---------------CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 255 ---------------PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 255 ---------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
....|.+.++||+|-..- +++.-.+..+..+++||.++.|+++|++.+.+.+.
T Consensus 214 ~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISi--------EELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 214 FDATADDLIDVVEGNRIYVPCIYVLNKIDSISI--------EELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred cCcchhhhhhhhccCceeeeeeeeecccceeee--------eccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 013688999999997652 11222334557899999999999999999988764
No 321
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.8e-10 Score=112.00 Aligned_cols=151 Identities=21% Similarity=0.308 Sum_probs=100.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC--------------------c----ce------eecCCCCceeeEEEEEEecCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT--------------------K----VA------AVSRKTNTTTHEVLGVMTKADT 187 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~--------------------~----~~------~~~~~~~tt~~~~~~~~~~~~~ 187 (424)
.....+++|+.++|||||+-+|+.. + ++ ......|.|.+.....+.....
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 4678999999999999999998730 0 00 0112234555555555666777
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCcE
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQKR 260 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p~ 260 (424)
.+.++|+||+..+ +..+......||+.++|+|++.+. ..+..+...+++.++. ..+
T Consensus 256 ~~tliDaPGhkdF------------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi-----~ql 318 (603)
T KOG0458|consen 256 IVTLIDAPGHKDF------------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGI-----SQL 318 (603)
T ss_pred eEEEecCCCcccc------------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCc-----ceE
Confidence 8999999997654 344556678899999999997431 1122345556666652 348
Q ss_pred EEEEecCCCCCChhh----HHHHHHHHh-cCCCCC----eEEEEecCCCcChHH
Q 014461 261 VLCMNKVDLVTKKKD----LLKVAEQFK-HLPGYE----RIFMTSGLKGAGLKA 305 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~----~~~~~~~~~-~~~~~~----~~~~iSA~~g~gi~~ 305 (424)
++++||+|+++-.++ +...+..|. +..+|. .++|||+.+|+|+-.
T Consensus 319 ivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 319 IVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 999999999875432 222233333 333442 589999999999754
No 322
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.15 E-value=2e-10 Score=94.21 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=104.1
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...+.++++++|-.|+||||++..|.+.....+.+..+....... ..+...+.+||..|...-+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~---~~g~f~LnvwDiGGqr~IR------------- 76 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVE---YDGTFHLNVWDIGGQRGIR------------- 76 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEe---ecCcEEEEEEecCCccccc-------------
Confidence 345679999999999999999999998876655555554433322 2345789999999975422
Q ss_pred HHH-hhcccccEEEEEEeCCCCCCCc--hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh--cC-CC
Q 014461 215 SAW-SAVNLFEVLMVVFDVHRHLTSP--DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HL-PG 288 (424)
Q Consensus 215 ~~~-~~~~~aD~vl~VvD~~~~~~~~--~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~-~~ 288 (424)
-.| .++...|.++||+|.++.-... ...+.+++++... ...|+.+..||.|+.... ...+....+. .. ..
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl---~~vpvlIfankQdlltaa-~~eeia~klnl~~lrdR 152 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL---AEVPVLIFANKQDLLTAA-KVEEIALKLNLAGLRDR 152 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh---hccceeehhhhhHHHhhc-chHHHHHhcchhhhhhc
Confidence 222 2356779999999976532111 1233344444332 247899999999987641 1222211111 00 01
Q ss_pred CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 289 YERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 289 ~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.-.+-.|||.+++|+.+-.+|+.....
T Consensus 153 swhIq~csals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 153 SWHIQECSALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred eEEeeeCccccccCccCcchhhhcCCC
Confidence 114788999999999999999887653
No 323
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.15 E-value=4.8e-10 Score=102.29 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=41.7
Q ss_pred CcEEEEEecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 258 QKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 258 ~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.|.++++||+|+.... .......+.+....+..+++++||++|.|++++++++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999997532 2233444444444445579999999999999999999875
No 324
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=3.5e-10 Score=118.81 Aligned_cols=133 Identities=23% Similarity=0.333 Sum_probs=91.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC-----cceeecC------------CCCceeeEEEEEEecCC-ccEEEEeCCCc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSR------------KTNTTTHEVLGVMTKAD-TQICIFDTPGL 197 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~------------~~~tt~~~~~~~~~~~~-~~i~l~DtpG~ 197 (424)
..+..+|+++|+..+|||||..+|+-. +...+.+ ..+.|.......+.+.+ ..++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 345789999999999999999998731 1111111 12344444444466774 99999999999
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL 277 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~ 277 (424)
.++. ..+.++ ++.+|++++|+|+..+...+...+++...+. +.|.++++||+|.... ++.
T Consensus 87 VDFt---------~EV~rs---lrvlDgavvVvdaveGV~~QTEtv~rqa~~~------~vp~i~fiNKmDR~~a--~~~ 146 (697)
T COG0480 87 VDFT---------IEVERS---LRVLDGAVVVVDAVEGVEPQTETVWRQADKY------GVPRILFVNKMDRLGA--DFY 146 (697)
T ss_pred cccH---------HHHHHH---HHhhcceEEEEECCCCeeecHHHHHHHHhhc------CCCeEEEEECcccccc--Chh
Confidence 8763 224444 4556999999999988888777777666654 3889999999999873 344
Q ss_pred HHHHHHhcCCC
Q 014461 278 KVAEQFKHLPG 288 (424)
Q Consensus 278 ~~~~~~~~~~~ 288 (424)
...+.+....+
T Consensus 147 ~~~~~l~~~l~ 157 (697)
T COG0480 147 LVVEQLKERLG 157 (697)
T ss_pred hhHHHHHHHhC
Confidence 44444444433
No 325
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.14 E-value=5.3e-10 Score=101.11 Aligned_cols=82 Identities=21% Similarity=0.272 Sum_probs=53.5
Q ss_pred ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-hhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-KKDLLKVAEQFKHLPGYERIFMTSGLKGA 301 (424)
Q Consensus 223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 301 (424)
+|.++.|+|+........ .....+. ..-++++||+|+.+. ..+.....+.+....+..+++++||++|+
T Consensus 113 ~~~~i~vvD~~~~~~~~~----~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR----KGGPGIT------RSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhh----hhHhHhh------hccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 478999999964322111 1111111 124899999999852 12333334444444455679999999999
Q ss_pred ChHHHHHHHHHhc
Q 014461 302 GLKALTQYLMEQA 314 (424)
Q Consensus 302 gi~~L~~~i~~~l 314 (424)
|+++++++|.+++
T Consensus 183 gi~el~~~i~~~~ 195 (199)
T TIGR00101 183 GLDTVIDWIEHYA 195 (199)
T ss_pred CHHHHHHHHHhhc
Confidence 9999999998765
No 326
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.14 E-value=8e-10 Score=101.61 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=91.3
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE-ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~-~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
||+++|+.|+||||+.+.+..+-.+.-....+.|.+.....+ ..+...+.+||.||.......+-. ... -..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~----~~~---~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFN----SQR---EEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHT----CCH---HHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccc----ccH---HHH
Confidence 689999999999999999987654433334444544433334 355668999999999755322100 001 123
Q ss_pred cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh---HH----HHHHHHhcCC-CCC
Q 014461 220 VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD---LL----KVAEQFKHLP-GYE 290 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~---~~----~~~~~~~~~~-~~~ 290 (424)
++.++++|||+|+.. ........+...++.+... .++..+.+.++|+|+..+... .. ...+...... ...
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~ 152 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDI 152 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSE
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccce
Confidence 577899999999962 2222222333444433322 246889999999999864211 11 1112222221 113
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.++.+|.-. +.+-+.+..|...+.+
T Consensus 153 ~~~~TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 153 TFFLTSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTTST
T ss_pred EEEeccCcC-cHHHHHHHHHHHHHcc
Confidence 477788766 5777777777777643
No 327
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.13 E-value=6.4e-10 Score=92.70 Aligned_cols=167 Identities=17% Similarity=0.243 Sum_probs=112.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
-..+|+++|.+..|||||+-...+..... ...+++- ...... +...+..+.+||..|..++...++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de--~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP--------- 87 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDE--EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLP--------- 87 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHH--HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCc---------
Confidence 47899999999999999999998876531 1111111 111111 222334568999999886644333
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC-----hhhHHHHHHHHhcCCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK-----KKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~-----~~~~~~~~~~~~~~~~~ 289 (424)
-...++-+++|++|.+++.+ ...+.+|.++.......-+| |+|++|.|+.-. ...+......+++..+.
T Consensus 88 ---iac~dsvaIlFmFDLt~r~T--LnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 88 ---IACKDSVAILFMFDLTRRST--LNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNA 161 (205)
T ss_pred ---eeecCcEEEEEEEecCchHH--HHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 13467789999999976433 34566777776655444456 678999986321 12334445566666555
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
. .|.||+....|++.+|..+...+..-+|.-+
T Consensus 162 s-L~F~Sts~sINv~KIFK~vlAklFnL~~ti~ 193 (205)
T KOG1673|consen 162 S-LFFCSTSHSINVQKIFKIVLAKLFNLPWTIP 193 (205)
T ss_pred c-EEEeeccccccHHHHHHHHHHHHhCCceecc
Confidence 5 8889999999999999999999888887544
No 328
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.5e-10 Score=109.33 Aligned_cols=116 Identities=18% Similarity=0.279 Sum_probs=82.5
Q ss_pred cceEEEEEecCCCChhHHHHhHh--CCcc-------------eeecCC------CCceeeEEEEEEecCCccEEEEeCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV--GTKV-------------AAVSRK------TNTTTHEVLGVMTKADTQICIFDTPG 196 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~--~~~~-------------~~~~~~------~~tt~~~~~~~~~~~~~~i~l~DtpG 196 (424)
+....+|+.+|.+|||||...|+ |+.+ ...|+. .|....+....+.+.++.++++||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 44668999999999999999876 2111 011221 23333333444778899999999999
Q ss_pred cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
+.++. +.++..+..+|.+++|+|+..++......+.+.++.. ++|++-.+||+|...
T Consensus 91 HeDFS------------EDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR------~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFS------------EDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR------DIPIFTFINKLDREG 147 (528)
T ss_pred ccccc------------hhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhc------CCceEEEeecccccc
Confidence 98763 3455666778999999999888766655555555432 589999999999875
No 329
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.5e-09 Score=100.36 Aligned_cols=161 Identities=19% Similarity=0.353 Sum_probs=99.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCC-----ceeeEEEEEEe---------cCCccEEEEeCCCcccCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTN-----TTTHEVLGVMT---------KADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~-----tt~~~~~~~~~---------~~~~~i~l~DtpG~~~~~~ 202 (424)
...+++++|+-.+|||||..+|..-. .+.....|+ .|.+.-...+. .+.-++.++|+||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 35889999999999999999997421 111222222 22221111111 1223579999999742
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHH
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKV 279 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~ 279 (424)
.++..+....-.|+.++|+|+..+...+..+.+-.=+.+. ...++|+||+|...+. ..+.+.
T Consensus 83 ---------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c------~klvvvinkid~lpE~qr~ski~k~ 147 (522)
T KOG0461|consen 83 ---------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLC------KKLVVVINKIDVLPENQRASKIEKS 147 (522)
T ss_pred ---------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhc------cceEEEEeccccccchhhhhHHHHH
Confidence 2444445555679999999998776655444332222222 3478999999987652 233333
Q ss_pred HHHHhc------CCCCCeEEEEecCCC----cChHHHHHHHHHhccC
Q 014461 280 AEQFKH------LPGYERIFMTSGLKG----AGLKALTQYLMEQAVQ 316 (424)
Q Consensus 280 ~~~~~~------~~~~~~~~~iSA~~g----~gi~~L~~~i~~~l~~ 316 (424)
...+++ ..+..+++++||+.| +++.+|.+.|.+.+..
T Consensus 148 ~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 148 AKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred HHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence 333322 123347999999999 8899999999887754
No 330
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=3e-10 Score=93.49 Aligned_cols=156 Identities=17% Similarity=0.190 Sum_probs=100.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..++.++|-.|+||+|++-++--.++...-+.++..... +.+.+-++.+||..|...-.+ ..+.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~----v~yKNLk~~vwdLggqtSirP---------yWRc-- 81 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVET----VPYKNLKFQVWDLGGQTSIRP---------YWRC-- 81 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccc----cccccccceeeEccCcccccH---------HHHH--
Confidence 5688999999999999998887655554333333332222 345777889999999764211 1222
Q ss_pred hhcccccEEEEEEeCCCCCCC--chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH-----HHHHhcCCCCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTS--PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-----AEQFKHLPGYE 290 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~--~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-----~~~~~~~~~~~ 290 (424)
++.+.|.+|+|+|.++...- ....+..+|.+-... +..++++.||.|..... ...+. ++.+++.. -
T Consensus 82 -Yy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq---~a~llv~anKqD~~~~~-t~~E~~~~L~l~~Lk~r~--~ 154 (182)
T KOG0072|consen 82 -YYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQ---HAKLLVFANKQDYSGAL-TRSEVLKMLGLQKLKDRI--W 154 (182)
T ss_pred -HhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhc---CceEEEEeccccchhhh-hHHHHHHHhChHHHhhhe--e
Confidence 35678999999999754222 222444445443322 35688999999986531 11111 12222221 2
Q ss_pred eEEEEecCCCcChHHHHHHHHHhcc
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+|..||.+|+|+++.++||.+.+.
T Consensus 155 ~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 155 QIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred EEEeeccccccCCcHHHHHHHHHHh
Confidence 5899999999999999999998764
No 331
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.08 E-value=4.5e-10 Score=102.79 Aligned_cols=170 Identities=19% Similarity=0.149 Sum_probs=107.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVR 212 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~ 212 (424)
..+...+++.|.+|+|||||+|.++..+... ...+++.|+... ...-+..++++|.||.....-+.. ..+...+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAIN---HFHVGKSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeee---eeeccceEEEEecCCcccccCCccCcchHhHh
Confidence 3456889999999999999999998755322 222556555433 223466789999999543221111 1233333
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-----hHHHHHHHHhcCC
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-----DLLKVAEQFKHLP 287 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~~~~~~~ 287 (424)
...++..-+.-=.+++++|++.++...+....+|+.+.+ .|+.+|+||||...... ........+....
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~------VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENN------VPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcC------CCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 344433333445677888999888888888889998864 89999999999864311 0001111111111
Q ss_pred -----CCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 288 -----GYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 288 -----~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
...+++.+|+.++.|+++|+-.+.+..
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhhh
Confidence 112467799999999999887776543
No 332
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.08 E-value=9.9e-10 Score=108.43 Aligned_cols=107 Identities=22% Similarity=0.307 Sum_probs=72.8
Q ss_pred CCCCCCCCcc----ChhhHHH-HHHhcCC---eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 014461 62 DPQNNNAAKK----QEPTWDE-KYRERTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132 (424)
Q Consensus 62 ~~k~Dl~~~~----~~~~~~~-~~~~~~~---~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 132 (424)
.||+||.++. ....|.. ++...+. .+++.|+ ++.|..++ ++...+.
T Consensus 97 ~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL-----------------~~~l~~~-------- 151 (360)
T TIGR03597 97 GNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDEL-----------------LDKIKKA-------- 151 (360)
T ss_pred EEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHH-----------------HHHHHHH--------
Confidence 4588997654 3455654 3444553 3677788 77787766 1111100
Q ss_pred hhhcccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
....+++++|.+|||||||+|+|++.. ...++..|+||+......+ +..+.++||||+...
T Consensus 152 ----~~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~---~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 152 ----RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL---DDGHSLYDTPGIINS 217 (360)
T ss_pred ----hCCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe---CCCCEEEECCCCCCh
Confidence 013689999999999999999999743 4568899999988664433 334689999999754
No 333
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.08 E-value=8.3e-10 Score=96.59 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=44.0
Q ss_pred EEEEEecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 260 RVLCMNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
-++|+||.|+.+.- .++....+..++..+..+++.+|+++|+|++++++|+....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 58999999997642 34455566666677777899999999999999999997654
No 334
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.9e-10 Score=94.10 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=97.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+++++|-.|+|||||++.|...+...--+.- +++...+..++..+..+|..|... .++.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTl----HPTSE~l~Ig~m~ftt~DLGGH~q-------------Arr~ 80 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTL----HPTSEELSIGGMTFTTFDLGGHLQ-------------ARRV 80 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCc----CCChHHheecCceEEEEccccHHH-------------HHHH
Confidence 46789999999999999999999887765433333 333334557888899999999742 2222
Q ss_pred H-hhcccccEEEEEEeCCCCCCCchH--HHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHH--HHHhcC---
Q 014461 217 W-SAVNLFEVLMVVFDVHRHLTSPDS--RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVA--EQFKHL--- 286 (424)
Q Consensus 217 ~-~~~~~aD~vl~VvD~~~~~~~~~~--~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~--~~~~~~--- 286 (424)
| ..+..+|.+++.+|+-+.-...+. +....+.... ....|+++.+||+|....- +++.... ..+...
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~---la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~ 157 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES---LATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGK 157 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH---HhcCcceeecccccCCCcccHHHHHHHHHHHHHhccccc
Confidence 2 346778999999999653222221 1111111110 1258999999999998642 1111111 111110
Q ss_pred -----CC--CCeEEEEecCCCcChHHHHHHHHHh
Q 014461 287 -----PG--YERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 287 -----~~--~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.+ ...+|.||...+.|..+-+.|+...
T Consensus 158 v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 158 VNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred ccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 01 1158999999888877777766543
No 335
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=5.1e-09 Score=90.46 Aligned_cols=162 Identities=17% Similarity=0.246 Sum_probs=102.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..++++++|..|.||||++++.+.+.+.... ...|...+.....-..+...+..|||.|...... +. +
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg-lr--d-------- 77 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG-LR--D-------- 77 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecc-cc--c--------
Confidence 4788999999999999999998877765322 1222223332222222335789999999875422 11 0
Q ss_pred HhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+-...+.++++|++...+... ..+..-+.+.. .++|+++.+||.|..... .....-.+....+. .++++
T Consensus 78 -gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~----~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl-~y~~i 149 (216)
T KOG0096|consen 78 -GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR----ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNL-QYYEI 149 (216)
T ss_pred -ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh----cCCCeeeeccceeccccc--cccccceeeecccc-eeEEe
Confidence 12234568888999976544322 22333233322 248999999999986542 11111112222233 48999
Q ss_pred ecCCCcChHHHHHHHHHhccCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
||+++.|.+.-|-|+...+...|
T Consensus 150 Saksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 150 SAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred ecccccccccchHHHhhhhcCCC
Confidence 99999999999999999997765
No 336
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.2e-08 Score=94.08 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=105.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC----------cceeec-----CCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT----------KVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~----------~~~~~~-----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
....+|+.+|+-+.|||||..++... .+..+. ...+.|..+....+...+..+..+|+||+.++
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY- 88 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY- 88 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH-
Confidence 45689999999999999999998741 111122 22356666665567777888999999998643
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhHH---
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDLL--- 277 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~~--- 277 (424)
+++.+....+.|..|+|+.++++.-.+...-.-+.++++ .| +++++||+|+.++.+.+.
T Consensus 89 -----------vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvG------vp~ivvflnK~Dmvdd~ellelVe 151 (394)
T COG0050 89 -----------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVG------VPYIVVFLNKVDMVDDEELLELVE 151 (394)
T ss_pred -----------HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcC------CcEEEEEEecccccCcHHHHHHHH
Confidence 444555556779999999998775554433222333443 43 677899999998633221
Q ss_pred HHHHHHhcCCCCC----eEEEEecCC-Cc-------ChHHHHHHHHHhccC
Q 014461 278 KVAEQFKHLPGYE----RIFMTSGLK-GA-------GLKALTQYLMEQAVQ 316 (424)
Q Consensus 278 ~~~~~~~~~~~~~----~~~~iSA~~-g~-------gi~~L~~~i~~~l~~ 316 (424)
..+.++...++|+ +++.-||+. .+ .|.+|++++-++++.
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 2234455556664 566667653 22 257777777777654
No 337
>PRK01889 GTPase RsgA; Reviewed
Probab=98.96 E-value=2.8e-10 Score=112.04 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=81.4
Q ss_pred hhccccccccCCCCCcEEEEeCCCCccCCC-CCCCCCCCccC-hhhHHHHHHhcCCeEEEeec-cccccchhhhHHHHHH
Q 014461 32 SAQPQQTDNETENDCDSVFDSSYFRIPTID-DPQNNNAAKKQ-EPTWDEKYRERTDRIVFGEE-AQKGKLRIFQEEEEER 108 (424)
Q Consensus 32 ~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~k~Dl~~~~~-~~~~~~~~~~~~~~i~f~~~-~~~~~~~l~~~~~~~~ 108 (424)
+..|.++. .. ..++++.++++.++.+. .||+||++... ...|...+ ..++.|++.++ ++.|...+
T Consensus 121 s~~p~~~~--~~-ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~~L-------- 188 (356)
T PRK01889 121 SLNHDFNL--RR-IERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLDVL-------- 188 (356)
T ss_pred ecCCCCCh--hH-HHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHHHH--------
Confidence 33444444 33 45677777777777777 88999987521 22344444 56788888888 77777665
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEE
Q 014461 109 KHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGV 181 (424)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~ 181 (424)
...+ ..+..++++|.+|+|||||+|.|.+......+. ..++|+......
T Consensus 189 ----------~~~L--------------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~ 244 (356)
T PRK01889 189 ----------AAWL--------------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHP 244 (356)
T ss_pred ----------HHHh--------------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEE
Confidence 1111 134579999999999999999999754322211 123444433333
Q ss_pred EecCCccEEEEeCCCcccC
Q 014461 182 MTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~ 200 (424)
+..+ ..++||||+..+
T Consensus 245 l~~~---~~l~DtpG~~~~ 260 (356)
T PRK01889 245 LPSG---GLLIDTPGMREL 260 (356)
T ss_pred ecCC---CeecCCCchhhh
Confidence 3322 268899998654
No 338
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.93 E-value=1.4e-08 Score=96.50 Aligned_cols=127 Identities=16% Similarity=0.250 Sum_probs=68.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecC--------C-CCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCC-h
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSR--------K-TNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS-H 206 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~--------~-~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~-~ 206 (424)
.++|+++|.+|+|||||+|.|++........ . ...........+..++. .+.++||||+........ .
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 5789999999999999999999865443220 1 11112222222333333 478999999875432110 0
Q ss_pred hhh----hhHHHHHHhh----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 207 KDV----KVRVESAWSA----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 207 ~~~----~~~~~~~~~~----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
..+ ...+...+.. -...|++||+++++. ++...+.. .++++.. ..++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~---~mk~Ls~----~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE---FMKRLSK----RVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH---HHHHHTT----TSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH---HHHHhcc----cccEEeEEecccccC
Confidence 111 1112222211 134599999999863 34433433 4455442 367999999999987
Q ss_pred C
Q 014461 272 K 272 (424)
Q Consensus 272 ~ 272 (424)
.
T Consensus 157 ~ 157 (281)
T PF00735_consen 157 P 157 (281)
T ss_dssp H
T ss_pred H
Confidence 4
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.92 E-value=7.1e-09 Score=90.22 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=71.1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
.|..+..+|++++|+|++.+....+..+.+.+... ..+.|+++|+||+|+.+. .........+.+...+. ++++
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVlNKiDl~~~-~~~~~~~~~~~~~~~~~-~~~i 75 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVLNKCDLVPT-WVTARWVKILSKEYPTI-AFHA 75 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEEEchhcCCH-HHHHHHHHHHhcCCcEE-EEEe
Confidence 36678889999999999877666566676766642 124789999999999764 34555666776655444 6899
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||++|.|+++|++.|.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999998764
No 340
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.77 E-value=1.5e-09 Score=93.32 Aligned_cols=161 Identities=22% Similarity=0.212 Sum_probs=107.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCc-eeeEEEEEEecCCc---cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNT-TTHEVLGVMTKADT---QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~t-t~~~~~~~~~~~~~---~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
.++.|+|.-|+|||+++.+.+...+.. .+..| ..+....++.+++. ++.|||..|+..+....
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~--~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mt----------- 92 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSY--HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMT----------- 92 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHH--HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceE-----------
Confidence 678899999999999999987543321 00000 00111222334443 45799999987553211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhcCCCCC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHLPGYE 290 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 290 (424)
.-.++.+.+..+|||.++..+. +.+..|..++.. ......|+++..||||..+... .--.....+.+.+++.
T Consensus 93 -rVyykea~~~~iVfdvt~s~tf--e~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~ 169 (229)
T KOG4423|consen 93 -RVYYKEAHGAFIVFDVTRSLTF--EPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFE 169 (229)
T ss_pred -EEEecCCcceEEEEEccccccc--cHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCcc
Confidence 1235778899999999875544 344555555433 2223378999999999976421 1124567788889999
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
..+++|+|.+.+++|....+.+.+.-
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~lv 195 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKILV 195 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHHHh
Confidence 99999999999999999999887643
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=7.1e-08 Score=83.73 Aligned_cols=88 Identities=24% Similarity=0.295 Sum_probs=60.9
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|++++|+|++++....+..+...+... +.|+++|+||+|+... ....... .+....+. +++++||++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~------~~p~iiv~NK~Dl~~~-~~~~~~~-~~~~~~~~-~~~~iSa~~ 80 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLEL------GKKLLIVLNKADLVPK-EVLEKWK-SIKESEGI-PVVYVSAKE 80 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHhC------CCcEEEEEEhHHhCCH-HHHHHHH-HHHHhCCC-cEEEEEccc
Confidence 4468999999999765554444444443321 3789999999999753 2222221 23333333 489999999
Q ss_pred CcChHHHHHHHHHhccC
Q 014461 300 GAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~~ 316 (424)
|.|+++|++.|.+.++.
T Consensus 81 ~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 81 RLGTKILRRTIKELAKI 97 (156)
T ss_pred cccHHHHHHHHHHHHhh
Confidence 99999999999988864
No 342
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.75 E-value=2e-08 Score=97.98 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=68.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNKS 202 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~~ 202 (424)
.+++++|.||+|||||+|+|++.....+.++|.||..+..+++...+ ..+.++|.||+....+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 68999999999999999999998874678899999888887765544 3588999999976421
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
.- ...-...+..++.+|++++|+|+.
T Consensus 83 ~g-----~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KG-----EGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cc-----cCcchHHHHHHHhCCEEEEEEeCC
Confidence 10 111234456678899999999985
No 343
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=5.6e-08 Score=97.66 Aligned_cols=158 Identities=22% Similarity=0.266 Sum_probs=100.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-----ceee------------cCCCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAV------------SRKTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~------------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
.+..+|++.-+-.+||||+.++++... ...+ ....+.|.......+.+.+..+++|||||+.+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 356789999999999999999987311 1111 11123444444444667789999999999987
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~ 279 (424)
+. ..+++++..+ |..++|+|+..+...+...+...+.+.+ .|.+..+||+|.... .....
T Consensus 117 FT---------~EVeRALrVl---DGaVlvl~aV~GVqsQt~tV~rQ~~ry~------vP~i~FiNKmDRmGa--~~~~~ 176 (721)
T KOG0465|consen 117 FT---------FEVERALRVL---DGAVLVLDAVAGVESQTETVWRQMKRYN------VPRICFINKMDRMGA--SPFRT 176 (721)
T ss_pred EE---------EEehhhhhhc---cCeEEEEEcccceehhhHHHHHHHHhcC------CCeEEEEehhhhcCC--ChHHH
Confidence 63 2355555554 8899999998887777777777776654 899999999999874 33344
Q ss_pred HHHHhcCCCC-CeEEEEecCCCcChHHHHHHHHHhc
Q 014461 280 AEQFKHLPGY-ERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 280 ~~~~~~~~~~-~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
++.+...... +.++.+-.....++..+.+.+...+
T Consensus 177 l~~i~~kl~~~~a~vqiPig~e~~f~GvvDlv~~ka 212 (721)
T KOG0465|consen 177 LNQIRTKLNHKPAVVQIPIGSESNFKGVVDLVNGKA 212 (721)
T ss_pred HHHHHhhcCCchheeEccccccccchhHHhhhhceE
Confidence 4444433322 2233332223335555555555444
No 344
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.71 E-value=2.6e-07 Score=86.37 Aligned_cols=175 Identities=15% Similarity=0.177 Sum_probs=102.3
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec----CCccEEEEeCCCcccCCCCCChhhh
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK----ADTQICIFDTPGLMLNKSGYSHKDV 209 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~----~~~~i~l~DtpG~~~~~~~~~~~~~ 209 (424)
...+.+.+|.++|..++|||||+..|-|.... +.+.......-.+.. +-.++.+|-..|-.-.
T Consensus 47 sklpsgk~VlvlGdn~sGKtsLi~klqg~e~~----KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h--------- 113 (473)
T KOG3905|consen 47 SKLPSGKNVLVLGDNGSGKTSLISKLQGSETV----KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYH--------- 113 (473)
T ss_pred ccCCCCCeEEEEccCCCchhHHHHHhhccccc----CCCCCcceEEEecccccchhhhhcceEEecCchhh---------
Confidence 45667889999999999999999999886532 122111111111111 1123444444443211
Q ss_pred hhHHHHHHhhcccc-cEEEEEEeCCCCCCCchH--HHHHHHHH-------------------------hcc---CC----
Q 014461 210 KVRVESAWSAVNLF-EVLMVVFDVHRHLTSPDS--RVIRLIER-------------------------MGK---QA---- 254 (424)
Q Consensus 210 ~~~~~~~~~~~~~a-D~vl~VvD~~~~~~~~~~--~~~~~l~~-------------------------~~~---~~---- 254 (424)
...++.++.+..-+ -++|+++|.+++++..+. .|...+.+ +.. ..
T Consensus 114 ~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp 193 (473)
T KOG3905|consen 114 KGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSP 193 (473)
T ss_pred hhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 11233333333333 467788888876543221 22221111 000 00
Q ss_pred --------------------------CCCCcEEEEEecCCCCC----Ch-------hhHHHHHHHHhcCCCCCeEEEEec
Q 014461 255 --------------------------PPKQKRVLCMNKVDLVT----KK-------KDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 255 --------------------------~~~~p~ilV~NK~Dl~~----~~-------~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.-++|+++|++|||... .. +-+...++.|+-.+|.. .|.+|+
T Consensus 194 ~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSv 272 (473)
T KOG3905|consen 194 QRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSV 272 (473)
T ss_pred ccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeec
Confidence 01589999999999842 11 12344566777777776 888999
Q ss_pred CCCcChHHHHHHHHHhccCCCCCCC
Q 014461 298 LKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
|...|++-|..+|.......++..+
T Consensus 273 KE~KNidllyKYivhr~yG~~fttp 297 (473)
T KOG3905|consen 273 KETKNIDLLYKYIVHRSYGFPFTTP 297 (473)
T ss_pred ccccchHHHHHHHHHHhcCcccCCc
Confidence 9999999999999999876665443
No 345
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.3e-07 Score=88.10 Aligned_cols=124 Identities=23% Similarity=0.403 Sum_probs=76.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--------------------------------
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-------------------------------- 185 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-------------------------------- 185 (424)
...-|+++|+-..||||+++.|+...+.-....|..|++....++..+
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 456799999999999999999998776533333333333222221110
Q ss_pred ---------CccEEEEeCCCcccCCC-----CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc
Q 014461 186 ---------DTQICIFDTPGLMLNKS-----GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251 (424)
Q Consensus 186 ---------~~~i~l~DtpG~~~~~~-----~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~ 251 (424)
=..+.++||||+.+... ++.+..... . .+..+|.|++++|+. .+ +-..+..+.+..+.
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~----W--FaeR~D~IiLlfD~h-KL-DIsdEf~~vi~aLk 208 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLE----W--FAERVDRIILLFDAH-KL-DISDEFKRVIDALK 208 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHH----H--HHHhccEEEEEechh-hc-cccHHHHHHHHHhh
Confidence 02478999999975432 222222111 1 246789999999984 22 22234445555554
Q ss_pred cCCCCCCcEEEEEecCCCCCC
Q 014461 252 KQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 252 ~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
... -.+-+|+||.|.++.
T Consensus 209 G~E---dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 209 GHE---DKIRVVLNKADQVDT 226 (532)
T ss_pred CCc---ceeEEEeccccccCH
Confidence 332 347899999999885
No 346
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.7e-08 Score=92.39 Aligned_cols=137 Identities=20% Similarity=0.241 Sum_probs=91.5
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCc-----------------ceeecCCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTK-----------------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~-----------------~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG 196 (424)
+...+..+|+++.+-.+||||...+++.-. +.......+.|.......+++.|.++.++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 344456789999999999999999987311 111222335555555556889999999999999
Q ss_pred cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH
Q 014461 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL 276 (424)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~ 276 (424)
..++. -.+++.+..+ |.++.|+|++.+...+...++..-. ..++|.+..+||+|... ...
T Consensus 112 hvdf~---------leverclrvl---dgavav~dasagve~qtltvwrqad------k~~ip~~~finkmdk~~--anf 171 (753)
T KOG0464|consen 112 HVDFR---------LEVERCLRVL---DGAVAVFDASAGVEAQTLTVWRQAD------KFKIPAHCFINKMDKLA--ANF 171 (753)
T ss_pred cceEE---------EEHHHHHHHh---cCeEEEEeccCCcccceeeeehhcc------ccCCchhhhhhhhhhhh--hhh
Confidence 98763 2244544444 9999999998776654433332222 23588999999999876 344
Q ss_pred HHHHHHHhcCCCCC
Q 014461 277 LKVAEQFKHLPGYE 290 (424)
Q Consensus 277 ~~~~~~~~~~~~~~ 290 (424)
...++.+.+..+..
T Consensus 172 e~avdsi~ekl~ak 185 (753)
T KOG0464|consen 172 ENAVDSIEEKLGAK 185 (753)
T ss_pred hhHHHHHHHHhCCc
Confidence 44555555554443
No 347
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.66 E-value=6.9e-07 Score=85.55 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=75.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee----cCCC-----CceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV----SRKT-----NTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYS 205 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~----~~~~-----~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~ 205 (424)
...++|+++|++|.|||||+|.|++...... ...+ ..........+..++. ++.++||||+.+.-....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 5679999999999999999999998643211 1111 1112222223444444 478999999987643211
Q ss_pred h-hh----hhhHHHHHHhh-----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461 206 H-KD----VKVRVESAWSA-----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (424)
Q Consensus 206 ~-~~----~~~~~~~~~~~-----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~D 268 (424)
- .. +...+..++.. =...+++||.+..+. ++...+...+..+.. .+.+|-|+.|.|
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-------~vNlIPVI~KaD 173 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-------RVNLIPVIAKAD 173 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-------ccCeeeeeeccc
Confidence 1 11 11222222211 134589999998753 344444343333332 245888999999
Q ss_pred CCCC
Q 014461 269 LVTK 272 (424)
Q Consensus 269 l~~~ 272 (424)
....
T Consensus 174 ~lT~ 177 (373)
T COG5019 174 TLTD 177 (373)
T ss_pred cCCH
Confidence 8875
No 348
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.66 E-value=9.6e-08 Score=88.07 Aligned_cols=91 Identities=20% Similarity=0.186 Sum_probs=62.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC--cceeecCCCCceeeEEEEEEec---CCccEEEEeCCCcccCCCCC-Chhhhhh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT--KVAAVSRKTNTTTHEVLGVMTK---ADTQICIFDTPGLMLNKSGY-SHKDVKV 211 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~--~~~~~~~~~~tt~~~~~~~~~~---~~~~i~l~DtpG~~~~~~~~-~~~~~~~ 211 (424)
+...|+|+|++++|||||+|.|++. .+........+|+......... .+..++++||||+....... .+ .
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~----~ 81 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFED----D 81 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhh----h
Confidence 4567899999999999999999998 6765556677777665554433 35789999999998654322 11 1
Q ss_pred HHHHHHhhcccccEEEEEEeCC
Q 014461 212 RVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
....++..+ -+|++|+..+..
T Consensus 82 ~~~~~l~~l-lss~~i~n~~~~ 102 (224)
T cd01851 82 ARLFALATL-LSSVLIYNSWET 102 (224)
T ss_pred hHHHHHHHH-HhCEEEEeccCc
Confidence 111111111 378999888874
No 349
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.65 E-value=3.2e-07 Score=87.66 Aligned_cols=163 Identities=21% Similarity=0.313 Sum_probs=97.9
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCccee----------e---cCCCCceeeEEEEEEec-----------------
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA----------V---SRKTNTTTHEVLGVMTK----------------- 184 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~----------~---~~~~~tt~~~~~~~~~~----------------- 184 (424)
..+....|+..|+-++|||||+-+|...+... + .-..+.|.+....++-+
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567889999999999999999987432110 0 00011222222222111
Q ss_pred ------CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461 185 ------ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (424)
Q Consensus 185 ------~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (424)
.+.-+.|+||.|+... ++.++..+ ...|..++++-++++.+....+-+-.+-.+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpw------------LrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~------ 254 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPW------------LRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAM------ 254 (527)
T ss_pred hHhhhhcccEEEEEecCCccHH------------HHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhh------
Confidence 1234779999997532 33333332 567999999999888766554433333332
Q ss_pred CCcEEEEEecCCCCCChhhHHHHHHHHh-------c--------------------CCCCCeEEEEecCCCcChHHHHHH
Q 014461 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFK-------H--------------------LPGYERIFMTSGLKGAGLKALTQY 309 (424)
Q Consensus 257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-------~--------------------~~~~~~~~~iSA~~g~gi~~L~~~ 309 (424)
..|+|+|++|+|+..+ +.+....+++. . ..+..++|.+|+.+|+|++-|.+.
T Consensus 255 ~lPviVvvTK~D~~~d-dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 255 ELPVIVVVTKIDMVPD-DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred cCCEEEEEEecccCcH-HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 4799999999999875 22222222211 0 112347999999999999866554
Q ss_pred HHHhccCC
Q 014461 310 LMEQAVQR 317 (424)
Q Consensus 310 i~~~l~~~ 317 (424)
+ ..+|..
T Consensus 334 f-~~Lp~r 340 (527)
T COG5258 334 F-LLLPKR 340 (527)
T ss_pred H-HhCCcc
Confidence 4 455543
No 350
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.6e-07 Score=95.12 Aligned_cols=117 Identities=21% Similarity=0.348 Sum_probs=75.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCC----------------CCceeeE--EEEEEe---cCCccEEEEeC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK----------------TNTTTHE--VLGVMT---KADTQICIFDT 194 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~----------------~~tt~~~--~~~~~~---~~~~~i~l~Dt 194 (424)
.....+|+++|+-.+|||+|+..|........+.. .+++... ..-.+. ...+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 34568899999999999999999987543221110 0111111 111111 22334889999
Q ss_pred CCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 195 PGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 195 pG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
||+..+ ...+...++.+|++++|+|+..+..-....+.+..-+ . +.|+++|+||+|..
T Consensus 205 PGHVnF------------~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~---~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNF------------SDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---N---RLPIVVVINKVDRL 262 (971)
T ss_pred CCcccc------------hHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---c---cCcEEEEEehhHHH
Confidence 999865 2233345677899999999988776655544332222 1 47899999999963
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=1.5e-06 Score=78.12 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=74.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceee-------cCCCCceeeEE-EEEEecCCc--cEEEEeCCCcccCCCCCCh-h
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRKTNTTTHEV-LGVMTKADT--QICIFDTPGLMLNKSGYSH-K 207 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~~~tt~~~~-~~~~~~~~~--~i~l~DtpG~~~~~~~~~~-~ 207 (424)
.++|++||.+|.|||||+|.|...++... .+.+.|+.-.. ...+..++. ++.++||||+.+.-..-.- +
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 58999999999999999999986554321 12334443332 223444444 4789999999865432111 1
Q ss_pred hhhhHH----HHHHh---------hc--ccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 208 DVKVRV----ESAWS---------AV--NLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 208 ~~~~~~----~~~~~---------~~--~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
.+...+ ...+. .+ ...++++|.+..+.+. ...+..+++.|.+. ..++-|+-|.|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v-------vNvvPVIakaDtlT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV-------VNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh-------heeeeeEeeccccc
Confidence 111111 11111 01 3458899999887443 33344555555543 34788999999765
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=2.9e-07 Score=81.31 Aligned_cols=95 Identities=21% Similarity=0.334 Sum_probs=66.5
Q ss_pred hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (424)
...+.+.+..+..+|++++|+|++.+....+..+.. ... +.|+++|+||+|+... .......+.+... .
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~---~~~-----~k~~ilVlNK~Dl~~~-~~~~~~~~~~~~~-~- 75 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEK---ILG-----NKPRIIVLNKADLADP-KKTKKWLKYFESK-G- 75 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHh---Hhc-----CCCEEEEEehhhcCCh-HHHHHHHHHHHhc-C-
Confidence 345677788889999999999998665544333322 221 3679999999999753 2222333333332 2
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..++.+||++|.|+++|.+.+.+.++
T Consensus 76 ~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 76 EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 35899999999999999999988763
No 353
>PF07650 KH_2: KH domain syndrome, contains KH motifs.; InterPro: IPR004044 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-2 KH domain include eukaryotic and prokaryotic S3 family of ribosomal proteins, and the prokaryotic GTP-binding protein, era.; GO: 0003723 RNA binding; PDB: 2XR1_B 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C 3J0V_F ....
Probab=98.59 E-value=4.4e-08 Score=74.64 Aligned_cols=51 Identities=35% Similarity=0.532 Sum_probs=47.9
Q ss_pred EEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 373 EQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 373 ~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
.+.+++.+.+|++++||++|++|++|+..+++.|+.+++++|+|+++ +|++
T Consensus 25 ~~~~i~i~~~~~~ivIGk~G~~ik~i~~~~~k~l~~~~~~~V~l~v~-~V~~ 75 (78)
T PF07650_consen 25 DQIIIVIKASQPGIVIGKKGSNIKKIREELRKELEKLLNKKVFLNVV-KVKK 75 (78)
T ss_dssp SEEEEEEEESSHHHHHTGGGHHHHHHHHHHHHHHHHHCSSSEEEEEE-EESS
T ss_pred CeEEEEEeCCCccHhHHhhhHHHHHHHHHHHHHHhhcCCCcEEEEEE-EecC
Confidence 56778889999999999999999999999999999999999999999 8874
No 354
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.1e-06 Score=84.88 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=75.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee------cCCCCce--eeEEEEEEecCCc--cEEEEeCCCcccCCCCCC-
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV------SRKTNTT--THEVLGVMTKADT--QICIFDTPGLMLNKSGYS- 205 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~------~~~~~tt--~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~- 205 (424)
.-.+.++++|.+|.|||||+|.|++..+... ...+..| .......+..+|. .++++||||+.+.-....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4468999999999999999999987643211 1112112 2222222344444 478999999986432111
Q ss_pred h----hhhhhHHHHHHhh--------c--ccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 206 H----KDVKVRVESAWSA--------V--NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 206 ~----~~~~~~~~~~~~~--------~--~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
. ..+...+..++.. . ...+++||.+..+.+ +...+....+.+.. ...+|-|+-|.|..
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-------~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-------KVNLIPVIAKADTL 171 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-------cccccceeeccccC
Confidence 0 1112223322221 1 256899999987643 44444444333332 35688899999998
Q ss_pred CC
Q 014461 271 TK 272 (424)
Q Consensus 271 ~~ 272 (424)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 75
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.59 E-value=2.9e-07 Score=79.90 Aligned_cols=83 Identities=27% Similarity=0.343 Sum_probs=57.4
Q ss_pred cEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC
Q 014461 224 EVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG 302 (424)
Q Consensus 224 D~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 302 (424)
|++++|+|+.++.......+. ..+.. .+.|+++|+||+|+... .....+...+.... ...++++||++|.|
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~------~~~p~IiVlNK~Dl~~~-~~~~~~~~~~~~~~-~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE------KGKKLILVLNKADLVPK-EVLRKWLAYLRHSY-PTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc------CCCCEEEEEechhcCCH-HHHHHHHHHHHhhC-CceEEEEeccCCcC
Confidence 789999999766555444333 12222 24789999999999763 33334444454443 34589999999999
Q ss_pred hHHHHHHHHHhc
Q 014461 303 LKALTQYLMEQA 314 (424)
Q Consensus 303 i~~L~~~i~~~l 314 (424)
+++|.+.|.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999987653
No 356
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.58 E-value=2.7e-07 Score=87.97 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=69.4
Q ss_pred hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (424)
....+.....+..+|++++|+|+..+.+.....+.+.+. +.|+++|+||+|+.+. .......+.+.. .+.
T Consensus 9 ~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--------~kp~IiVlNK~DL~~~-~~~~~~~~~~~~-~~~ 78 (276)
T TIGR03596 9 AKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--------NKPRLIVLNKADLADP-AVTKQWLKYFEE-KGI 78 (276)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--------CCCEEEEEEccccCCH-HHHHHHHHHHHH-cCC
Confidence 345666777889999999999998766655544444431 3689999999999753 333444444433 233
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.++++||++|.|+++|.+.|.+.++.
T Consensus 79 -~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 79 -KALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 48999999999999999999887754
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.57 E-value=3.9e-07 Score=81.84 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=58.5
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh-----cCC--CCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK-----HLP--GYE 290 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~-----~~~--~~~ 290 (424)
..+..+|++++|+|+++........+ .... .+.|+++|+||+|+...... ......+. ... ...
T Consensus 30 ~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~----~~~~~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 30 SISPKKALVVHVVDIFDFPGSLIPRL----RLFG----GNNPVILVGNKIDLLPKDKN-LVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred hcccCCcEEEEEEECccCCCccchhH----HHhc----CCCcEEEEEEchhcCCCCCC-HHHHHHHHHHHHHhhcCCCcc
Confidence 34578899999999976433322222 1111 24789999999999754221 11112221 111 223
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.++++||++|.|+++|+++|.+.++.
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~~ 126 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAKK 126 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 58999999999999999999998753
No 358
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.55 E-value=3.5e-07 Score=85.52 Aligned_cols=90 Identities=19% Similarity=0.293 Sum_probs=63.1
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|.+++|+|++++.. ....+..|+..... .+.|+++|+||+||........+..+.+.. .++ .++++||+
T Consensus 33 ~~~n~D~viiV~d~~~p~~-s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~-~v~~~SAk 106 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPEL-SLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGY-QVLMTSSK 106 (245)
T ss_pred ccccCCEEEEEEECCCCCC-CHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCC-eEEEEecC
Confidence 3677899999999975432 23345555554332 247899999999997644333345555654 455 49999999
Q ss_pred CCcChHHHHHHHHHhc
Q 014461 299 KGAGLKALTQYLMEQA 314 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l 314 (424)
+|.|+++|++.+.+..
T Consensus 107 tg~gi~eLf~~l~~~~ 122 (245)
T TIGR00157 107 NQDGLKELIEALQNRI 122 (245)
T ss_pred CchhHHHHHhhhcCCE
Confidence 9999999999887543
No 359
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.53 E-value=1.9e-07 Score=88.11 Aligned_cols=91 Identities=19% Similarity=0.271 Sum_probs=68.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-----------------CccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-----------------DTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-----------------~~~i~l~DtpG~~~ 199 (424)
...++++|||.||||||||+|+|+..... ..+.|.+|.++..+.+... ...+.++|..|...
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35679999999999999999999998877 8999999988866653221 12488999999875
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
..+. -...-...++.++.+|+++.|+++.
T Consensus 97 GAs~-----G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASA-----GEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred Cccc-----CcCchHHHHHhhhhccceeEEEEec
Confidence 4320 0111233456788899999999885
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.51 E-value=4.5e-06 Score=80.83 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=81.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc-----------eeeEEEEEE------------------
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-----------TTHEVLGVM------------------ 182 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t-----------t~~~~~~~~------------------ 182 (424)
++..++++|++|+||||++..|.+ .++..+...+.. .+.......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 467889999999999999998864 222222211110 000000000
Q ss_pred ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh-----cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCC
Q 014461 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA-----VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPK 257 (424)
Q Consensus 183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~-----~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (424)
...++.++++||||...... .....+...... -...+.+++|+|++.+. ..+.+ ...+....
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~-----~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~----~~~~~-a~~f~~~~--- 259 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT-----NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ----NALSQ-AKAFHEAV--- 259 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH-----HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh----HHHHH-HHHHHhhC---
Confidence 12456799999999864321 111112222221 12467889999997432 12222 22222111
Q ss_pred CcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461 258 QKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 258 ~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~ 307 (424)
.+.-+|+||+|....-.........+ +.+ +..++ +|+++++|.
T Consensus 260 ~~~giIlTKlD~t~~~G~~l~~~~~~----~~P-i~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 260 GLTGIILTKLDGTAKGGVVFAIADEL----GIP-IKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCEEEEECCCCCCCccHHHHHHHHH----CCC-EEEEe--CCCChhhCc
Confidence 23568999999765434444444333 443 77776 788887764
No 361
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=6.1e-07 Score=76.57 Aligned_cols=82 Identities=26% Similarity=0.427 Sum_probs=59.4
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
+.++..+..+|++++|+|+.++....+..+.+++.... .+.|+++|+||+|+... .......+.+... +. .++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----~~k~~iivlNK~DL~~~-~~~~~~~~~~~~~-~~-~ii 75 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVD----PRKKNILLLNKADLLTE-EQRKAWAEYFKKE-GI-VVV 75 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhcc----CCCcEEEEEechhcCCH-HHHHHHHHHHHhc-CC-eEE
Confidence 45567788899999999998877766667777777542 24789999999999753 3333444444433 33 589
Q ss_pred EEecCCCcC
Q 014461 294 MTSGLKGAG 302 (424)
Q Consensus 294 ~iSA~~g~g 302 (424)
++||++|.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999999876
No 362
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=7e-07 Score=91.91 Aligned_cols=113 Identities=27% Similarity=0.317 Sum_probs=75.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC---------------ceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN---------------TTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~---------------tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
....+++++.+-..|||||...|+.......+...| .|.....-.+...++.++++|+||+.++.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 346789999999999999999998543322222222 22222111134578889999999998764
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHH--HHHHhccCCCCCCcEEEEEecCCC
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIR--LIERMGKQAPPKQKRVLCMNKVDL 269 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~--~l~~~~~~~~~~~p~ilV~NK~Dl 269 (424)
+. +. ....-+|..++++|+..+.......++. |.+. ...++|+||+|.
T Consensus 87 se---------vs---sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~--------~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SE---------VS---SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG--------LKPILVINKIDR 136 (887)
T ss_pred hh---------hh---hhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc--------CceEEEEehhhh
Confidence 21 22 2345579999999998887766655554 3332 447999999993
No 363
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.47 E-value=7.2e-06 Score=81.92 Aligned_cols=122 Identities=18% Similarity=0.164 Sum_probs=68.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCc-----------eee--EEEEEEe--------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNT-----------TTH--EVLGVMT-------------- 183 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~t-----------t~~--~~~~~~~-------------- 183 (424)
.++..|+++|.+||||||++..|. |.++..++..+.. ... +......
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346789999999999999999886 4444434332211 010 1111111
Q ss_pred --cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461 184 --KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (424)
Q Consensus 184 --~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (424)
..+++++|+||||..... ......+.... .....|.+++|+|++.+. ..... .+.+... -.+.-
T Consensus 178 ~~~~~~DvViIDTaGr~~~d-----~~lm~El~~i~-~~~~p~e~lLVlda~~Gq--~a~~~---a~~F~~~---~~~~g 243 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQE-----DSLFEEMLQVA-EAIQPDNIIFVMDGSIGQ--AAEAQ---AKAFKDS---VDVGS 243 (429)
T ss_pred HHhCCCCEEEEECCCCCcch-----HHHHHHHHHHh-hhcCCcEEEEEeccccCh--hHHHH---HHHHHhc---cCCcE
Confidence 125789999999975431 11212222222 234568899999986432 11222 2333211 12467
Q ss_pred EEEecCCCCCC
Q 014461 262 LCMNKVDLVTK 272 (424)
Q Consensus 262 lV~NK~Dl~~~ 272 (424)
+|+||+|....
T Consensus 244 ~IlTKlD~~ar 254 (429)
T TIGR01425 244 VIITKLDGHAK 254 (429)
T ss_pred EEEECccCCCC
Confidence 89999998654
No 364
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.42 E-value=1.9e-06 Score=87.15 Aligned_cols=63 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred CCcEEEEEecCCCCCC---h--------hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCC
Q 014461 257 KQKRVLCMNKVDLVTK---K--------KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWS 320 (424)
Q Consensus 257 ~~p~ilV~NK~Dl~~~---~--------~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~ 320 (424)
++|++||++|+|.... + +-+...++.++-.+|.. .|.+|++...+++-|+.+|...+...++.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~~~f~ 269 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYGFPFK 269 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhccCCCC
Confidence 3799999999997421 0 12345566677677776 88899999999999999999998776654
No 365
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.8e-06 Score=86.91 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=82.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce------------------------------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT------------------------------------------ 174 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt------------------------------------------ 174 (424)
....+|+|.|..++||||++|+++..++-.. +..++|
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~-g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPS-GIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcc-cccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3568999999999999999999986443211 111111
Q ss_pred --eeEEEEEEecCC------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHH
Q 014461 175 --THEVLGVMTKAD------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRL 246 (424)
Q Consensus 175 --~~~~~~~~~~~~------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~ 246 (424)
......++..++ ..+.++|.||...... . -........++|++|+|+.+.+.++.....+
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se------~---tswid~~cldaDVfVlV~NaEntlt~sek~F--- 253 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE------L---TSWIDSFCLDADVFVLVVNAENTLTLSEKQF--- 253 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchh------h---hHHHHHHhhcCCeEEEEecCccHhHHHHHHH---
Confidence 111111222222 3588999999875421 1 1111234567899999999976555444433
Q ss_pred HHHhccCCCCCCcEEEEEecCCCCCChhhHH-HHHHHHhcCC------CCCeEEEEecCC
Q 014461 247 IERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-KVAEQFKHLP------GYERIFMTSGLK 299 (424)
Q Consensus 247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~-~~~~~~~~~~------~~~~~~~iSA~~ 299 (424)
+...... +..++++.||.|....+.... ....++.+.. ....+|.|||+.
T Consensus 254 f~~vs~~---KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 254 FHKVSEE---KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred HHHhhcc---CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 3333222 233777888889876533222 1222222211 123689999763
No 366
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.1e-06 Score=81.58 Aligned_cols=165 Identities=15% Similarity=0.277 Sum_probs=95.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCC---------------------CCceeeEEEEE----------EecC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK---------------------TNTTTHEVLGV----------MTKA 185 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~---------------------~~tt~~~~~~~----------~~~~ 185 (424)
...++|+-+|+.-.||||++.++.|-......+. +.+.+...... +...
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 3468999999999999999999987321110000 00000000000 0000
Q ss_pred C--------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCC
Q 014461 186 D--------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPP 256 (424)
Q Consensus 186 ~--------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~ 256 (424)
+ ..+.|+|+||+.- .+...+....-.|++++++.+......+. .+-+..++-+..
T Consensus 116 g~~~~~klvRHVSfVDCPGHDi------------LMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L---- 179 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDI------------LMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL---- 179 (466)
T ss_pred CCCCceEEEEEEEeccCCchHH------------HHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh----
Confidence 1 2467999999631 12233333344588888888764333222 122222332221
Q ss_pred CCcEEEEEecCCCCCChhhHHH--HHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 257 KQKRVLCMNKVDLVTKKKDLLK--VAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 257 ~~p~ilV~NK~Dl~~~~~~~~~--~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
+.++++-||+|+....+..+. ....|-.-. ...+++|+||.-+.|++-+.++|.+.++..+
T Consensus 180 -khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 180 -KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred -ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 348899999999876433222 122222111 2236999999999999999999999997654
No 367
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.39 E-value=1.4e-06 Score=83.46 Aligned_cols=96 Identities=22% Similarity=0.297 Sum_probs=68.4
Q ss_pred hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC
Q 014461 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 289 (424)
....+..+..+..+|++++|+|+..+.+.....+.+.+. +.|+++|+||+|+.+. .......+.+... +
T Consensus 12 ~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--------~kp~iiVlNK~DL~~~-~~~~~~~~~~~~~-~- 80 (287)
T PRK09563 12 AKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--------NKPRLLILNKSDLADP-EVTKKWIEYFEEQ-G- 80 (287)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--------CCCEEEEEEchhcCCH-HHHHHHHHHHHHc-C-
Confidence 345666777889999999999997766655544443332 3689999999999753 3333444444322 2
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
..++.+||+++.|+++|.+.|.+.++.
T Consensus 81 ~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 81 IKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 248999999999999999998877643
No 368
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=5e-06 Score=78.51 Aligned_cols=161 Identities=18% Similarity=0.265 Sum_probs=101.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC----------Ccceeec-----CCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVS-----RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~----------~~~~~~~-----~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
....+|+-+|+-..|||||..++.. .++..+. ...+.|.......+......+-=+|+||+-++
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY- 130 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY- 130 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH-
Confidence 4568999999999999999998873 1122222 22345555443334445566778999997643
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH--
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV-- 279 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-- 279 (424)
+++......+-|..|+|+.++++.-.+..+-+-+-++++. ..+++.+||.|++++.+ ..++
T Consensus 131 -----------IKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV-----~~ivvfiNKvD~V~d~e-~leLVE 193 (449)
T KOG0460|consen 131 -----------IKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGV-----KHIVVFINKVDLVDDPE-MLELVE 193 (449)
T ss_pred -----------HHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCC-----ceEEEEEecccccCCHH-HHHHHH
Confidence 5555566677799999999998766655544444455552 34788899999996533 2222
Q ss_pred --HHHHhcCCCCC----eEEEEecC---CCcC-------hHHHHHHHHHhcc
Q 014461 280 --AEQFKHLPGYE----RIFMTSGL---KGAG-------LKALTQYLMEQAV 315 (424)
Q Consensus 280 --~~~~~~~~~~~----~~~~iSA~---~g~g-------i~~L~~~i~~~l~ 315 (424)
++++...++|+ +++.=||+ .|.+ |.+|++.+-++++
T Consensus 194 mE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 194 MEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 33444455553 57766654 4422 5556666655554
No 369
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.36 E-value=8.7e-07 Score=79.28 Aligned_cols=125 Identities=20% Similarity=0.228 Sum_probs=77.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHH-HH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVE-SA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~ 216 (424)
..||.++|.+|+||||+=..+.....+.-...+|.|.+..-+.+.. ++--+.+||..|+..+-. ..+. .-
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme--------n~~~~q~ 75 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME--------NYLSSQE 75 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHH--------HHHhhcc
Confidence 4689999999999999877666544443444556666555444433 345678999999863311 1111 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
-......+++++|+|++..--+.+. .....|+.+.. ..|...+++.+.|+|+...
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~-~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQ-NSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHh-cCCcceEEEEEeechhccc
Confidence 1235678999999999743222222 23333444332 2345778999999999864
No 370
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.34 E-value=3.3e-05 Score=73.26 Aligned_cols=151 Identities=15% Similarity=0.203 Sum_probs=80.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc-----------eeeEEEEE------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT-----------TTHEVLGV------------------ 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t-----------t~~~~~~~------------------ 181 (424)
.+...++++|++|+||||++..|.. .++..+...+.. .+......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 3457789999999999999888752 233222211100 00000000
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc-----ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCC
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV-----NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPP 256 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~-----~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (424)
....++.++++||||..... ......+....... ..+|.+++|+|++.+ .. .+. ....+....
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d-----~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~--~~~-~~~~f~~~~-- 217 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNK-----VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QN--ALE-QAKVFNEAV-- 217 (272)
T ss_pred HHHCCCCEEEEeCCCCCcch-----HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HH--HHH-HHHHHHhhC--
Confidence 01245789999999986421 11111122222222 237899999999632 11 111 122222111
Q ss_pred CCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461 257 KQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 257 ~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~ 307 (424)
.+.-+|+||+|....-.......... +.+ +..++ +|++++++.
T Consensus 218 -~~~g~IlTKlDe~~~~G~~l~~~~~~----~~P-i~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 218 -GLTGIILTKLDGTAKGGIILSIAYEL----KLP-IKFIG--VGEKIDDLA 260 (272)
T ss_pred -CCCEEEEEccCCCCCccHHHHHHHHH----CcC-EEEEe--CCCChHhCc
Confidence 13568899999876544444444433 333 66666 788887654
No 371
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=7.9e-06 Score=81.61 Aligned_cols=141 Identities=13% Similarity=0.309 Sum_probs=88.0
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
...+.++-|+++|+||+|||||+..|...-... +....+. ..++.....++.|+.+|.-
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP-----iTvvsgK~RRiTflEcp~D--------------- 123 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP-----ITVVSGKTRRITFLECPSD--------------- 123 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc-----eEEeecceeEEEEEeChHH---------------
Confidence 356677888999999999999999997532211 1111111 1123355667899999842
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH-----HhcCC
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ-----FKHLP 287 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~-----~~~~~ 287 (424)
+.......+-||+|++++|+.-++.-....++.++...+. ..++-|++..|+......+...... |.+.+
T Consensus 124 l~~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGm-----PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 124 LHQMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGM-----PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred HHHHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCC-----CceEEEEeecccccChHHHHHHHHHHhhhHHHHHc
Confidence 1122234566899999999976655544456666665542 2367799999998765444443333 22333
Q ss_pred CCCeEEEEecCC
Q 014461 288 GYERIFMTSGLK 299 (424)
Q Consensus 288 ~~~~~~~iSA~~ 299 (424)
.-...|.+|...
T Consensus 199 qGaKlFylsgV~ 210 (1077)
T COG5192 199 QGAKLFYLSGVE 210 (1077)
T ss_pred CCceEEEecccc
Confidence 444578888653
No 372
>PRK12289 GTPase RsgA; Reviewed
Probab=98.24 E-value=4.2e-06 Score=82.03 Aligned_cols=88 Identities=24% Similarity=0.360 Sum_probs=60.8
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+.++|.+++|+|+.++. .....+..++..... .+.|+++|+||+|+... .....+.+.+. ..++ .++++||++
T Consensus 87 ~aNvD~vLlV~d~~~p~-~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~-~~~~~~~~~~~-~~g~-~v~~iSA~t 159 (352)
T PRK12289 87 VANADQILLVFALAEPP-LDPWQLSRFLVKAES---TGLEIVLCLNKADLVSP-TEQQQWQDRLQ-QWGY-QPLFISVET 159 (352)
T ss_pred hhcCCEEEEEEECCCCC-CCHHHHHHHHHHHHH---CCCCEEEEEEchhcCCh-HHHHHHHHHHH-hcCC-eEEEEEcCC
Confidence 57789999999997432 222234455544321 24789999999999864 33344444443 3455 489999999
Q ss_pred CcChHHHHHHHHHhc
Q 014461 300 GAGLKALTQYLMEQA 314 (424)
Q Consensus 300 g~gi~~L~~~i~~~l 314 (424)
|.|+++|++.|...+
T Consensus 160 g~GI~eL~~~L~~ki 174 (352)
T PRK12289 160 GIGLEALLEQLRNKI 174 (352)
T ss_pred CCCHHHHhhhhccce
Confidence 999999999987643
No 373
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=6e-06 Score=78.75 Aligned_cols=155 Identities=21% Similarity=0.343 Sum_probs=93.5
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcce------eec-------CCCCceeeEE---EE------E------------Eec
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVA------AVS-------RKTNTTTHEV---LG------V------------MTK 184 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~------~~~-------~~~~tt~~~~---~~------~------------~~~ 184 (424)
..+++++|.-.+|||||+--|...... ... -..+.|.... .+ + ...
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 478999999999999999888743211 000 0011111100 00 0 111
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
...-+.|+|..|...+.....+ .+.. .-.|..++|+.+..+......+-+-++..+ +.|+++++
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~---------gLtg-Y~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL------~iPfFvlv 310 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIH---------GLTG-YTPHFACLVVSADRGITWTTREHLGLIAAL------NIPFFVLV 310 (591)
T ss_pred hcceEEEeecccchhhheeeee---------eccc-CCCceEEEEEEcCCCCccccHHHHHHHHHh------CCCeEEEE
Confidence 2234789999998755321110 0111 124888999999888777666555555555 48999999
Q ss_pred ecCCCCCChhhHHHHHHHHhc----------------------------CCCCCeEEEEecCCCcChHHHHHHH
Q 014461 265 NKVDLVTKKKDLLKVAEQFKH----------------------------LPGYERIFMTSGLKGAGLKALTQYL 310 (424)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~iSA~~g~gi~~L~~~i 310 (424)
+|+|+... +.+.+.++++.. ..+..++|.+|+.+|+|++-|...|
T Consensus 311 tK~Dl~~~-~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 311 TKMDLVDR-QGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred Eeeccccc-hhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 99999875 333333333221 1234478999999999998666554
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=98.22 E-value=9.8e-05 Score=71.93 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-----------e--eEEEEE----------------E
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-----------T--HEVLGV----------------M 182 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-----------~--~~~~~~----------------~ 182 (424)
++..++++|.+|+||||++..|.. .++..+....... . -..... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998777652 2222121111000 0 000000 0
Q ss_pred ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (424)
Q Consensus 183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il 262 (424)
...+..++++||+|..... ......++.... ....|.+++|+|+..+. + ..+....+.... ..--+
T Consensus 219 ~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~-~~~pd~~iLVl~a~~g~---d--~~~~a~~f~~~~---~~~gi 284 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTD-----ANLMDELKKIVR-VTKPDLVIFVGDALAGN---D--AVEQAREFNEAV---GIDGV 284 (336)
T ss_pred HhCCCCEEEEECCCccCCc-----HHHHHHHHHHHH-hhCCceEEEeeccccch---h--HHHHHHHHHhcC---CCCEE
Confidence 1134679999999986421 112122222222 23468999999996421 1 112223222111 12468
Q ss_pred EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHH
Q 014461 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~ 307 (424)
++||+|....-.......... +.+ +..++ +|+++++|.
T Consensus 285 IlTKlD~~~~~G~~ls~~~~~----~~P-i~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 285 ILTKVDADAKGGAALSIAYVI----GKP-ILFLG--VGQGYDDLI 322 (336)
T ss_pred EEeeecCCCCccHHHHHHHHH----CcC-EEEEe--CCCChhhcc
Confidence 899999876544444444332 333 67776 799988765
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.20 E-value=6.8e-06 Score=71.52 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=40.8
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhh-HHHHHHhhcccccEEEEEEeCCCCCCCc--hHHHHHHHHHhccCCCCCCcEEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKV-RVESAWSAVNLFEVLMVVFDVHRHLTSP--DSRVIRLIERMGKQAPPKQKRVL 262 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~-~~~~~~~~~~~aD~vl~VvD~~~~~~~~--~~~~~~~l~~~~~~~~~~~p~il 262 (424)
..+.+++||||...+.. .... +....+...-..|.+++++|+....... ...+...++.. -++
T Consensus 86 ~~d~I~IEt~G~~~p~~-----~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a---------d~i 151 (158)
T cd03112 86 AFDRIVIETTGLADPGP-----VAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA---------DRI 151 (158)
T ss_pred CCCEEEEECCCcCCHHH-----HHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC---------CEE
Confidence 46789999999986531 1111 1223444566789999999985321111 11222223221 377
Q ss_pred EEecCCC
Q 014461 263 CMNKVDL 269 (424)
Q Consensus 263 V~NK~Dl 269 (424)
|+||+|+
T Consensus 152 vlnk~dl 158 (158)
T cd03112 152 LLNKTDL 158 (158)
T ss_pred EEecccC
Confidence 9999996
No 376
>PRK00098 GTPase RsgA; Reviewed
Probab=98.19 E-value=7.7e-06 Score=78.79 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=58.7
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+.++|.+++|+|++++... ...+..++..... .+.|+++|+||+|+...........+.+.. .++ +++++||++
T Consensus 78 aaniD~vllV~d~~~p~~~-~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~-~g~-~v~~vSA~~ 151 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYRA-IGY-DVLELSAKE 151 (298)
T ss_pred eecCCEEEEEEECCCCCCC-HHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHH-CCC-eEEEEeCCC
Confidence 5788999999999654222 2233344443322 247899999999997443333333343433 345 499999999
Q ss_pred CcChHHHHHHHHHh
Q 014461 300 GAGLKALTQYLMEQ 313 (424)
Q Consensus 300 g~gi~~L~~~i~~~ 313 (424)
|.|+++|++.+...
T Consensus 152 g~gi~~L~~~l~gk 165 (298)
T PRK00098 152 GEGLDELKPLLAGK 165 (298)
T ss_pred CccHHHHHhhccCc
Confidence 99999999988543
No 377
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.19 E-value=2.1e-05 Score=79.37 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=97.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE-EEEE-EecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE-VLGV-MTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~-~~~~-~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.+...++|+.|+|||.++++++|+.+.. +....+.... ...+ .......+++-|.+-. ... .+..
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~-~l~~------- 491 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQD-FLTS------- 491 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeeccccceEEEeecCcc-ccc-cccC-------
Confidence 3456788999999999999999999987764 2222111111 1111 1122334566665543 110 0000
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.+ ..||++++++|.+++. ....+...... +... ...|+++|..|+|+.+..+...-.-.+++...+.++.+
T Consensus 492 ---ke--~~cDv~~~~YDsS~p~--sf~~~a~v~~~-~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~ 562 (625)
T KOG1707|consen 492 ---KE--AACDVACLVYDSSNPR--SFEYLAEVYNK-YFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPI 562 (625)
T ss_pred ---cc--ceeeeEEEecccCCch--HHHHHHHHHHH-hhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCe
Confidence 01 4589999999997432 22223232222 2222 35899999999999765433333336777777888788
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.+|.++... .++|..|...+..
T Consensus 563 ~~S~~~~~s-~~lf~kL~~~A~~ 584 (625)
T KOG1707|consen 563 HISSKTLSS-NELFIKLATMAQY 584 (625)
T ss_pred eeccCCCCC-chHHHHHHHhhhC
Confidence 888885223 8899999887753
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.17 E-value=1.2e-05 Score=79.47 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=57.4
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCC--CeEEE
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGY--ERIFM 294 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~--~~~~~ 294 (424)
...++++++|+|+.+........+ .+.. .+.|+++|+||+|+..... ...+.+.++....++ ..+++
T Consensus 61 ~~~~~~Il~VvD~~d~~~s~~~~l----~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~ 132 (360)
T TIGR03597 61 GDSNALIVYVVDIFDFEGSLIPEL----KRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIIL 132 (360)
T ss_pred ccCCcEEEEEEECcCCCCCccHHH----HHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEE
Confidence 357789999999965433322222 2221 1368999999999975422 233333333334444 25899
Q ss_pred EecCCCcChHHHHHHHHHh
Q 014461 295 TSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~ 313 (424)
+||++|.|++++++.|.+.
T Consensus 133 vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 133 VSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 9999999999999999765
No 379
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.11 E-value=1.3e-05 Score=76.72 Aligned_cols=86 Identities=19% Similarity=0.260 Sum_probs=57.5
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|.+++|+|+.++. .....+..++..+... +.|+++|+||+|+.... ........+. ..+. +++++||++
T Consensus 76 ~anvD~vllV~d~~~p~-~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~-~~~~~~~~~~-~~g~-~v~~vSA~~ 148 (287)
T cd01854 76 AANVDQLVIVVSLNEPF-FNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE-EEELELVEAL-ALGY-PVLAVSAKT 148 (287)
T ss_pred EEeCCEEEEEEEcCCCC-CCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH-HHHHHHHHHH-hCCC-eEEEEECCC
Confidence 67789999999997654 1222334445433322 47899999999997642 2112222222 2344 489999999
Q ss_pred CcChHHHHHHHHH
Q 014461 300 GAGLKALTQYLME 312 (424)
Q Consensus 300 g~gi~~L~~~i~~ 312 (424)
|.|+++|++.|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999998875
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.10 E-value=2.3e-05 Score=77.64 Aligned_cols=94 Identities=19% Similarity=0.199 Sum_probs=62.7
Q ss_pred HHHHHhhccccc-EEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCCC
Q 014461 213 VESAWSAVNLFE-VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLPG 288 (424)
Q Consensus 213 ~~~~~~~~~~aD-~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~ 288 (424)
+...+..+...| +|++|+|+.+.... +...+.++.. +.|+++|+||+|+.... ....++...+.+..+
T Consensus 59 ~~~~l~~i~~~~~lIv~VVD~~D~~~s----~~~~L~~~~~----~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 59 FLKLLNGIGDSDALVVNVVDIFDFNGS----WIPGLHRFVG----NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHhhcccCcEEEEEEECccCCCc----hhHHHHHHhC----CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcC
Confidence 444566666666 99999999753322 2333443321 46899999999997532 223334444444444
Q ss_pred C--CeEEEEecCCCcChHHHHHHHHHhc
Q 014461 289 Y--ERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
. ..++.+||++|.|+++|++.|.+..
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3 2589999999999999999998764
No 381
>PRK01889 GTPase RsgA; Reviewed
Probab=98.10 E-value=1.1e-05 Score=79.50 Aligned_cols=84 Identities=20% Similarity=0.399 Sum_probs=54.1
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+.++|.+++|+++...+.. ..+..+|...... +.|.++|+||+||.+......+....+ ..+. +++++||++
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~-~Vi~vSa~~ 181 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWES---GAEPVIVLTKADLCEDAEEKIAEVEAL--APGV-PVLAVSALD 181 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHc---CCCEEEEEEChhcCCCHHHHHHHHHHh--CCCC-cEEEEECCC
Confidence 4678999999999644332 2333333332211 356788999999986422222222222 2233 599999999
Q ss_pred CcChHHHHHHHH
Q 014461 300 GAGLKALTQYLM 311 (424)
Q Consensus 300 g~gi~~L~~~i~ 311 (424)
|.|+++|.++|.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999999885
No 382
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.00 E-value=4.9e-05 Score=86.11 Aligned_cols=127 Identities=16% Similarity=0.189 Sum_probs=71.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
+=.+++|++|+||||+++.- |..+..... ..+.|+++.. +-..+.+++||+|......... ......
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~-~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDP-EEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcc-cccHHH
Confidence 45689999999999999986 544432110 1122222111 1234568999999764321111 000111
Q ss_pred HHHHHhh------cccccEEEEEEeCCCCCCCchH-------HHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 213 VESAWSA------VNLFEVLMVVFDVHRHLTSPDS-------RVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 213 ~~~~~~~------~~~aD~vl~VvD~~~~~~~~~~-------~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
....+.. -...|+||+++|+.+-+..... .+...+.++........|+.+|+||||+...
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2222221 2456999999999754433221 2333344444333345899999999999864
No 383
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00012 Score=72.00 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=22.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..++..++++|++||||||++..|..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=97.94 E-value=5.8e-05 Score=74.01 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=58.6
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEec
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
+.++|.+++|++..... ....+..|+..... .+.|.++|+||+|+..... ...+....+.. .++ +++++||
T Consensus 118 aANvD~vlIV~s~~p~~--s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-~g~-~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPEL--SLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-IGY-RVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCC--CHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeC
Confidence 45689999999975432 22344444443321 2478999999999976421 23333344433 344 5999999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
++|.|+++|+++|...+
T Consensus 191 ~tg~GideL~~~L~~ki 207 (347)
T PRK12288 191 HTGEGLEELEAALTGRI 207 (347)
T ss_pred CCCcCHHHHHHHHhhCC
Confidence 99999999999997644
No 385
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.93 E-value=4.8e-05 Score=67.42 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=59.0
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+.++|+||+.+-.. |-.+...+-+.+....---++++++|+. -+.+....+.-.+..+.....-..|.|=|++|
T Consensus 98 ddylifDcPGQIELyt---H~pVm~~iv~hl~~~~F~~c~Vylldsq-f~vD~~KfiSG~lsAlsAMi~lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYT---HLPVMPQIVEHLKQWNFNVCVVYLLDSQ-FLVDSTKFISGCLSALSAMISLEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEee---cChhHHHHHHHHhcccCceeEEEEeccc-hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhH
Confidence 4588999999986532 2222122222222222224677777763 22232222222222211111124789999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcC---hHHHHHHHHHhccCC
Q 014461 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAG---LKALTQYLMEQAVQR 317 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g---i~~L~~~i~~~l~~~ 317 (424)
+||.+. ...+.++.|..--... ....|. .+.+ ...|...|...+.+.
T Consensus 174 MDLlk~--~~k~~l~~Fl~~d~~~-l~~~~~-~~~~s~Kf~~L~~~i~~~v~d~ 223 (273)
T KOG1534|consen 174 MDLLKD--KNKKELERFLNPDEYL-LLEDSE-INLRSPKFKKLTKCIAQLVDDY 223 (273)
T ss_pred HHHhhh--hhHHHHHHhcCCchhh-hhcccc-cccccHHHHHHHHHHHHHhccc
Confidence 999874 2233344443211111 121111 1222 667777777776544
No 386
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.93 E-value=8.5e-06 Score=72.41 Aligned_cols=139 Identities=20% Similarity=0.309 Sum_probs=70.6
Q ss_pred EEEEEecCCCChhHHHHhHh-----CCcceeecCCCCce----------eeEEEEE--------------------EecC
Q 014461 141 AVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTT----------THEVLGV--------------------MTKA 185 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~-----~~~~~~~~~~~~tt----------~~~~~~~--------------------~~~~ 185 (424)
-+.+.|..|+|||||++.++ +.+.+.+.+..+.. ....... ....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 36789999999999999998 23333332222200 0001110 1112
Q ss_pred --CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 186 --DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 186 --~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
+....++.+.|...+.. + ......+...-..+.++.|+|+..- ......-..+..++. .--++|
T Consensus 82 ~~~~d~IiIE~sG~a~p~~------l-~~~~~~~~~~~~~~~iI~vVDa~~~-~~~~~~~~~~~~Qi~------~ADvIv 147 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAP------L-ILQDPPLKEDFRLDSIITVVDATNF-DELENIPELLREQIA------FADVIV 147 (178)
T ss_dssp HGC-SEEEEEEECSSGGGG------H-HHHSHHHHHHESESEEEEEEEGTTH-GGHTTHCHHHHHHHC------T-SEEE
T ss_pred CCCcCEEEECCccccccch------h-hhccccccccccccceeEEeccccc-cccccchhhhhhcch------hcCEEE
Confidence 45789999999766532 1 0012222223345899999999532 111111111222222 124889
Q ss_pred EecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
+||+|+.+..+.+....+.+++.++..+++
T Consensus 148 lnK~D~~~~~~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 148 LNKIDLVSDEQKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp EE-GGGHHHH--HHHHHHHHHHH-TTSEEE
T ss_pred EeccccCChhhHHHHHHHHHHHHCCCCEEe
Confidence 999999875423345555555555555443
No 387
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=0.00023 Score=69.72 Aligned_cols=147 Identities=13% Similarity=0.192 Sum_probs=76.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce------------ee-EEEEEEe-------------cC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT------------TH-EVLGVMT-------------KA 185 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt------------~~-~~~~~~~-------------~~ 185 (424)
++..++++|++|+||||++..|.. .++..+...+... .. ....... ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 456789999999999999998863 2222222222111 00 0000000 13
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..++|+||||..... ......+...... ...|.+++|+++.. ....+.+.+..+... .+--+|+|
T Consensus 285 ~~D~VLIDTAGr~~~d-----~~~l~EL~~l~~~-~~p~~~~LVLsag~----~~~d~~~i~~~f~~l----~i~glI~T 350 (407)
T PRK12726 285 CVDHILIDTVGRNYLA-----EESVSEISAYTDV-VHPDLTCFTFSSGM----KSADVMTILPKLAEI----PIDGFIIT 350 (407)
T ss_pred CCCEEEEECCCCCccC-----HHHHHHHHHHhhc-cCCceEEEECCCcc----cHHHHHHHHHhcCcC----CCCEEEEE
Confidence 4689999999985321 1111222222222 24477778887632 223344555544321 23467899
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (424)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~ 305 (424)
|.|-...-..+....... +.+ +..+| +|++|.+
T Consensus 351 KLDET~~~G~~Lsv~~~t----glP-Isylt--~GQ~Vpd 383 (407)
T PRK12726 351 KMDETTRIGDLYTVMQET----NLP-VLYMT--DGQNITE 383 (407)
T ss_pred cccCCCCccHHHHHHHHH----CCC-EEEEe--cCCCCCc
Confidence 999876544444443332 333 33332 4666654
No 388
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.90 E-value=0.00013 Score=65.71 Aligned_cols=145 Identities=18% Similarity=0.248 Sum_probs=73.4
Q ss_pred eEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEE----------------Eec
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGV----------------MTK 184 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~----------------~~~ 184 (424)
..++++|++||||||.+-.|.. .++..++.....- .-..... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988763 2222211111000 0000000 012
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.+.+++++||||..... ......+...+... ..+-+++|++++.+... ...+....+.++ +-=+++
T Consensus 82 ~~~D~vlIDT~Gr~~~d-----~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~-------~~~lIl 147 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRD-----EELLEELKKLLEAL-NPDEVHLVLSATMGQED-LEQALAFYEAFG-------IDGLIL 147 (196)
T ss_dssp TTSSEEEEEE-SSSSTH-----HHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHH-HHHHHHHHHHSS-------TCEEEE
T ss_pred cCCCEEEEecCCcchhh-----HHHHHHHHHHhhhc-CCccceEEEecccChHH-HHHHHHHhhccc-------CceEEE
Confidence 34679999999976321 12222333333333 46789999999643111 112222222221 235679
Q ss_pred ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHH
Q 014461 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKA 305 (424)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~ 305 (424)
+|.|....-..+....... +.+ +-.+| +|++|++
T Consensus 148 TKlDet~~~G~~l~~~~~~----~~P-i~~it--~Gq~V~D 181 (196)
T PF00448_consen 148 TKLDETARLGALLSLAYES----GLP-ISYIT--TGQRVDD 181 (196)
T ss_dssp ESTTSSSTTHHHHHHHHHH----TSE-EEEEE--SSSSTTG
T ss_pred EeecCCCCcccceeHHHHh----CCC-eEEEE--CCCChhc
Confidence 9999876545554444433 222 43343 5666644
No 389
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.90 E-value=0.00018 Score=69.97 Aligned_cols=112 Identities=11% Similarity=0.139 Sum_probs=62.5
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC--------CchHHHHHHHHHhccC
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ 253 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--------~~~~~~~~~l~~~~~~ 253 (424)
+..++..+.+||++|....+. .....+.++++++||+|.++... .........++.+...
T Consensus 156 f~~~~~~~~~~DvgGq~~~R~------------kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 156 FTIKNLKFRMFDVGGQRSERK------------KWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred EEecceEEEEECCCCCcccch------------hHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 445667788999999864321 11234568899999999975211 0111222333332221
Q ss_pred -CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 254 -APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 254 -~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
...+.|+++++||.|+... .+. . .++..+||-=.-.+..+++..++|.+...
T Consensus 224 ~~~~~~pill~~NK~D~f~~--ki~-------~-~~l~~~fp~y~g~~~~~~~~~~~i~~~F~ 276 (317)
T cd00066 224 RWFANTSIILFLNKKDLFEE--KIK-------K-SPLTDYFPDYTGPPNDYEEAAKFIRKKFL 276 (317)
T ss_pred ccccCCCEEEEccChHHHHH--hhc-------C-CCccccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 2235899999999998652 111 1 12222332211113568888888877654
No 390
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.90 E-value=2.7e-05 Score=64.10 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=62.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
++++++|..|+|||+|+.++....+. ..+. .|.. +..+|. .
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~---~~~~~~t~~------------~~~~~~-----------------------~ 42 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD---YVPTVFTIG------------IDVYDP-----------------------T 42 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc---ccCceehhh------------hhhccc-----------------------c
Confidence 37999999999999999999654442 1111 1100 111110 1
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
..+.++.++.|++.+...+. ... |...+......+.|.++++||.|+........+... .++.+||+
T Consensus 43 ~~~s~~~~~~v~~~~~~~s~--~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~---------~~~~~s~~ 109 (124)
T smart00010 43 SYESFDVVLQCWRVDDRDSA--DNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL---------EFAETSAK 109 (124)
T ss_pred ccCCCCEEEEEEEccCHHHH--HHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH---------HHHHHhCC
Confidence 23446788888887543221 111 233222222335788999999998442111111111 24568999
Q ss_pred CCcChH
Q 014461 299 KGAGLK 304 (424)
Q Consensus 299 ~g~gi~ 304 (424)
+|.|+.
T Consensus 110 ~~~~~~ 115 (124)
T smart00010 110 TPEEGE 115 (124)
T ss_pred Ccchhh
Confidence 999884
No 391
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.90 E-value=0.00011 Score=72.20 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=47.2
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC--------CCchHHHHHHHHHhcc-
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGK- 252 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~--------~~~~~~~~~~l~~~~~- 252 (424)
+..++..+.+||.+|....+. .....+.++++++||+|.++-. ..........++.+..
T Consensus 179 f~~~~~~~~~~DvgGqr~~R~------------kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~ 246 (342)
T smart00275 179 FIVKKLFFRMFDVGGQRSERK------------KWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNS 246 (342)
T ss_pred EEECCeEEEEEecCCchhhhh------------hHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcC
Confidence 445566788999999753321 1123457789999999997521 0111122233333322
Q ss_pred CCCCCCcEEEEEecCCCCC
Q 014461 253 QAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 253 ~~~~~~p~ilV~NK~Dl~~ 271 (424)
....+.|+++++||.|+..
T Consensus 247 ~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 247 RWFANTSIILFLNKIDLFE 265 (342)
T ss_pred ccccCCcEEEEEecHHhHH
Confidence 2223589999999999865
No 392
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.90 E-value=9.4e-05 Score=72.68 Aligned_cols=131 Identities=16% Similarity=0.249 Sum_probs=70.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCc--------e-----eeEEEEEE------------e-cC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNT--------T-----THEVLGVM------------T-KA 185 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~t--------t-----~~~~~~~~------------~-~~ 185 (424)
++..|+++|++|+||||++..|.. .++..+...+.. + .-...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 357899999999999999999863 122222221110 0 00000000 0 01
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..++|+||||..... ...+ ..+...... ...+.+++|+|++.. ...+.+.++.+... ..-=++++
T Consensus 320 ~~DvVLIDTaGRs~kd----~~lm-~EL~~~lk~-~~PdevlLVLsATtk----~~d~~~i~~~F~~~----~idglI~T 385 (436)
T PRK11889 320 RVDYILIDTAGKNYRA----SETV-EEMIETMGQ-VEPDYICLTLSASMK----SKDMIEIITNFKDI----HIDGIVFT 385 (436)
T ss_pred CCCEEEEeCccccCcC----HHHH-HHHHHHHhh-cCCCeEEEEECCccC----hHHHHHHHHHhcCC----CCCEEEEE
Confidence 4689999999975321 1112 222222222 235778899998532 22334555555432 12457899
Q ss_pred cCCCCCChhhHHHHHHH
Q 014461 266 KVDLVTKKKDLLKVAEQ 282 (424)
Q Consensus 266 K~Dl~~~~~~~~~~~~~ 282 (424)
|.|-...-..+......
T Consensus 386 KLDET~k~G~iLni~~~ 402 (436)
T PRK11889 386 KFDETASSGELLKIPAV 402 (436)
T ss_pred cccCCCCccHHHHHHHH
Confidence 99987654555544443
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00039 Score=70.95 Aligned_cols=145 Identities=17% Similarity=0.259 Sum_probs=73.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC--------CcceeecCCCCce------------eeE-EEEEE----------ecC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------THE-VLGVM----------TKA 185 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~--------~~~~~~~~~~~tt------------~~~-~~~~~----------~~~ 185 (424)
..+..++|+|++|+||||++..|.. .++..+....... ... ..... ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 3567899999999999999988864 1222222111100 000 00000 113
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+.+++|+||||...... .....+.. +.... ....++|++++... ..+.+.++.+... .+.-+|+|
T Consensus 428 ~~DLVLIDTaG~s~~D~-----~l~eeL~~-L~aa~-~~a~lLVLpAtss~----~Dl~eii~~f~~~----~~~gvILT 492 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDR-----ALAAQLNW-LRAAR-QVTSLLVLPANAHF----SDLDEVVRRFAHA----KPQGVVLT 492 (559)
T ss_pred cCCEEEecCCCcchhhH-----HHHHHHHH-HHHhh-cCCcEEEEECCCCh----hHHHHHHHHHHhh----CCeEEEEe
Confidence 57899999999863211 11111111 11111 23467788875322 2233444444321 34678999
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (424)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 303 (424)
|+|....-......... .+.+ +..++ +|++|
T Consensus 493 KlDEt~~lG~aLsv~~~----~~LP-I~yvt--~GQ~V 523 (559)
T PRK12727 493 KLDETGRFGSALSVVVD----HQMP-ITWVT--DGQRV 523 (559)
T ss_pred cCcCccchhHHHHHHHH----hCCC-EEEEe--CCCCc
Confidence 99986543333333222 2333 44443 56666
No 394
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.87 E-value=0.00024 Score=68.74 Aligned_cols=153 Identities=21% Similarity=0.293 Sum_probs=85.5
Q ss_pred EEEEecCCCChhHHHHhHhCC----cce-------eecCCC-C---c----eeeEEEEE--Ee---------------cC
Q 014461 142 VGIIGAPNAGKSSIINYMVGT----KVA-------AVSRKT-N---T----TTHEVLGV--MT---------------KA 185 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~----~~~-------~~~~~~-~---t----t~~~~~~~--~~---------------~~ 185 (424)
.++-|.=|+|||||+|.++.. +++ .++-.. . . ......+. ++ .+
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 568899999999999999842 222 111110 0 0 00111111 11 23
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHH-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHH-HHhccCCCCCCcEEEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVE-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI-ERMGKQAPPKQKRVLC 263 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l-~~~~~~~~~~~p~ilV 263 (424)
....++|.|-|+-.|.+ ....... ..+...-..|.++-|+|+......... ..+.. .++. .--++|
T Consensus 84 ~~D~ivIEtTGlA~P~p-----v~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~-~~~~~~~Qia------~AD~iv 151 (323)
T COG0523 84 RPDRLVIETTGLADPAP-----VIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDA-IAELAEDQLA------FADVIV 151 (323)
T ss_pred CCCEEEEeCCCCCCCHH-----HHHHhccccccccceeeceEEEEEeHHHhhhhHHH-HHHHHHHHHH------hCcEEE
Confidence 45688999999987621 1111011 112223345889999999753332221 11211 1221 114899
Q ss_pred EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~ 308 (424)
+||+|+.+.. .+......+.+.++..+++.+|. .+.+..+++.
T Consensus 152 lNK~Dlv~~~-~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 152 LNKTDLVDAE-ELEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred EecccCCCHH-HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 9999999864 46666677777777778888877 4444444444
No 395
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.84 E-value=0.00091 Score=67.09 Aligned_cols=82 Identities=16% Similarity=0.293 Sum_probs=48.0
Q ss_pred ccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 187 TQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
.+++++|.||+...-. +.....-...+.-+..++...++||+|+--. ........+.+++..+.. .+...|+|++
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAERSnVTDLVsq~DP---~GrRTIfVLT 487 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAERSIVTDLVSQMDP---HGRRTIFVLT 487 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-CcchhhhhHHHHHHhcCC---CCCeeEEEEe
Confidence 3589999999975321 1111111122333445677888888887431 112222356666666543 2456899999
Q ss_pred cCCCCCC
Q 014461 266 KVDLVTK 272 (424)
Q Consensus 266 K~Dl~~~ 272 (424)
|+|+.+.
T Consensus 488 KVDlAEk 494 (980)
T KOG0447|consen 488 KVDLAEK 494 (980)
T ss_pred ecchhhh
Confidence 9999764
No 396
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.83 E-value=0.00013 Score=62.80 Aligned_cols=20 Identities=45% Similarity=0.921 Sum_probs=18.0
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
++++|.+|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998864
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.82 E-value=0.00024 Score=71.14 Aligned_cols=149 Identities=11% Similarity=0.161 Sum_probs=77.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--------ceeecCCC----------------CceeeEEEE-------EEecC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRKT----------------NTTTHEVLG-------VMTKA 185 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--------~~~~~~~~----------------~tt~~~~~~-------~~~~~ 185 (424)
..+..++++|++|+||||++..|.+.. ...+.... +........ .....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 356789999999999999999876521 11000000 000000000 01124
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..+.++||+|..... ......+.. +.......-.++|+|++.. ...+.+.+..+... ..-=++++
T Consensus 269 ~~d~VLIDTaGrsqrd-----~~~~~~l~~-l~~~~~~~~~~LVl~at~~----~~~~~~~~~~f~~~----~~~~~I~T 334 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-----QMLAEQIAM-LSQCGTQVKHLLLLNATSS----GDTLDEVISAYQGH----GIHGCIIT 334 (420)
T ss_pred CCCEEEecCCCCCcch-----HHHHHHHHH-HhccCCCceEEEEEcCCCC----HHHHHHHHHHhcCC----CCCEEEEE
Confidence 5678999999976321 111122222 2222334567889998632 23344555554422 12357899
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL 306 (424)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L 306 (424)
|.|-...-..+....... +.+ +..+ -+|++| +++
T Consensus 335 KlDEt~~~G~~l~~~~~~----~lP-i~yv--t~Gq~VP~Dl 369 (420)
T PRK14721 335 KVDEAASLGIALDAVIRR----KLV-LHYV--TNGQKVPEDL 369 (420)
T ss_pred eeeCCCCccHHHHHHHHh----CCC-EEEE--ECCCCchhhh
Confidence 999876544444443332 333 4434 357777 444
No 398
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.81 E-value=0.00015 Score=69.48 Aligned_cols=156 Identities=15% Similarity=0.216 Sum_probs=85.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcce-----------------------eec-------------CCCCcee--eEEEE
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVA-----------------------AVS-------------RKTNTTT--HEVLG 180 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~-----------------------~~~-------------~~~~tt~--~~~~~ 180 (424)
..+|+++|...+|||||+--|...... .++ ++|...- -.+..
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 468999999999999999887632110 000 0110000 00111
Q ss_pred EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 014461 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (424)
+......-+.|+|..|...+.....+ . ..-...|...+++-+..++-....+-+-+--.+ ..|+
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvF----G------MTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL------~VPV 276 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVF----G------MTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL------HVPV 276 (641)
T ss_pred eccccceeEEEEeccchhhhhheeee----c------cccCCCCceEEEecccccceeccHHhhhhhhhh------cCcE
Confidence 11122234789999998654211100 0 012345888888877654433322222111111 4899
Q ss_pred EEEEecCCCCCChhhHHHHH---HHHhcC--------------------CC-----CCeEEEEecCCCcChHHHHHHHH
Q 014461 261 VLCMNKVDLVTKKKDLLKVA---EQFKHL--------------------PG-----YERIFMTSGLKGAGLKALTQYLM 311 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~~~~~~---~~~~~~--------------------~~-----~~~~~~iSA~~g~gi~~L~~~i~ 311 (424)
++|++|+|.... ..+++.+ ..+.+. .+ ..++|.+|..+|.|++-|..+|-
T Consensus 277 fvVVTKIDMCPA-NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 277 FVVVTKIDMCPA-NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EEEEEeeccCcH-HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 999999999874 2333322 222211 11 23689999999999987766553
No 399
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=4.5e-05 Score=73.72 Aligned_cols=155 Identities=21% Similarity=0.252 Sum_probs=90.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc--------------------------e----eecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV--------------------------A----AVSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~--------------------------~----~~~~~~~tt~~~~~~~~~~~~ 186 (424)
....++.|+|+-.+||||+-..++.... + .-...-+.|...-...+....
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 4578999999999999998887764110 0 001112334444444566667
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-----CC--chHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-----TS--PDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-----~~--~~~~~~~~l~~~~~~~~~~~p 259 (424)
..+.++|+||.-.+ +......+.+||+.++|+.+..+- .. +...-..+.+..+ -..
T Consensus 157 ~~ftiLDApGHk~f------------v~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~ 219 (501)
T KOG0459|consen 157 KRFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKH 219 (501)
T ss_pred eeEEeeccCccccc------------chhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cce
Confidence 78999999998654 223345567889999999884221 10 0111111122222 134
Q ss_pred EEEEEecCCCCCCh---hhH---HHHHHHHhcCCCC-----CeEEEEecCCCcChHHHHH
Q 014461 260 RVLCMNKVDLVTKK---KDL---LKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~---~~~---~~~~~~~~~~~~~-----~~~~~iSA~~g~gi~~L~~ 308 (424)
.|+++||+|-...+ +.. .+.+..+....++ ..++++|..+|.++.+..+
T Consensus 220 lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEEeccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 78999999976431 111 1222222222222 2589999999999988665
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.77 E-value=0.00049 Score=69.44 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-------------eeEEEEEE--------------e
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-------------THEVLGVM--------------T 183 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-------------~~~~~~~~--------------~ 183 (424)
.++..|+++|.+|+||||++..|.. .++..+....... ........ .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3567899999999999999988752 2222222111100 00000000 0
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
..+..++++||||..... ......+.. +..+..+|.+++|+|++.+ ....+..+.+.... ...-+|
T Consensus 173 ~~~~DvVIIDTAGr~~~d-----~~lm~El~~-l~~~~~pdevlLVvda~~g-----q~av~~a~~F~~~l---~i~gvI 238 (437)
T PRK00771 173 FKKADVIIVDTAGRHALE-----EDLIEEMKE-IKEAVKPDEVLLVIDATIG-----QQAKNQAKAFHEAV---GIGGII 238 (437)
T ss_pred hhcCCEEEEECCCcccch-----HHHHHHHHH-HHHHhcccceeEEEecccc-----HHHHHHHHHHHhcC---CCCEEE
Confidence 123479999999976321 111111222 2234457899999999653 12223344433211 123578
Q ss_pred EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L 306 (424)
+||+|....-.......... +.+ +..++ +|+.+++|
T Consensus 239 lTKlD~~a~~G~~ls~~~~~----~~P-i~fig--~Ge~v~Dl 274 (437)
T PRK00771 239 ITKLDGTAKGGGALSAVAET----GAP-IKFIG--TGEKIDDL 274 (437)
T ss_pred EecccCCCcccHHHHHHHHH----CcC-EEEEe--cCCCcccC
Confidence 99999765433443333322 333 44443 46666554
No 401
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00037 Score=74.22 Aligned_cols=151 Identities=13% Similarity=0.190 Sum_probs=78.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc--------ceeecCCCCc---e--------ee--EEEEE----------EecCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK--------VAAVSRKTNT---T--------TH--EVLGV----------MTKAD 186 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~--------~~~~~~~~~t---t--------~~--~~~~~----------~~~~~ 186 (424)
++..++++|++||||||++..|.+.. +..+...... . .. ..... -...+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 35678999999999999999887532 1111111100 0 00 00000 01235
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..++||||||..... .......... ......+-+++|+|++. ....+.+.++.+...... .+-=+|++|
T Consensus 264 ~D~VLIDTAGRs~~d-----~~l~eel~~l-~~~~~p~e~~LVLsAt~----~~~~l~~i~~~f~~~~~~-~i~glIlTK 332 (767)
T PRK14723 264 KHLVLIDTVGMSQRD-----RNVSEQIAML-CGVGRPVRRLLLLNAAS----HGDTLNEVVHAYRHGAGE-DVDGCIITK 332 (767)
T ss_pred CCEEEEeCCCCCccC-----HHHHHHHHHH-hccCCCCeEEEEECCCC----cHHHHHHHHHHHhhcccC-CCCEEEEec
Confidence 679999999975322 1111112211 12334567899999863 223344445544321100 123578999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL 306 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L 306 (424)
.|-...-..+....... +.+ +..++ +|++| ++|
T Consensus 333 LDEt~~~G~iL~i~~~~----~lP-I~yit--~GQ~VPdDL 366 (767)
T PRK14723 333 LDEATHLGPALDTVIRH----RLP-VHYVS--TGQKVPEHL 366 (767)
T ss_pred cCCCCCccHHHHHHHHH----CCC-eEEEe--cCCCChhhc
Confidence 99876544555444433 333 44443 57777 443
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=0.00038 Score=70.79 Aligned_cols=148 Identities=13% Similarity=0.205 Sum_probs=75.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC--------cceeecCCCC-ce----------e-e-EEEE----------EEecCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT--------KVAAVSRKTN-TT----------T-H-EVLG----------VMTKAD 186 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~--------~~~~~~~~~~-tt----------~-~-~~~~----------~~~~~~ 186 (424)
++..++++|++||||||++..|.+. ++..+...+. .+ . . .... .....+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d 334 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN 334 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC
Confidence 4567899999999999999988742 2222221111 00 0 0 0000 011234
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+.++||+|..... ........ .+.......-.++|+|++.+ ...+.+.++.+... ...-+|+||
T Consensus 335 ~d~VLIDTaGr~~~d-----~~~~e~~~-~l~~~~~p~e~~LVLdAt~~----~~~l~~i~~~f~~~----~~~g~IlTK 400 (484)
T PRK06995 335 KHIVLIDTIGMSQRD-----RMVSEQIA-MLHGAGAPVKRLLLLNATSH----GDTLNEVVQAYRGP----GLAGCILTK 400 (484)
T ss_pred CCeEEeCCCCcChhh-----HHHHHHHH-HHhccCCCCeeEEEEeCCCc----HHHHHHHHHHhccC----CCCEEEEeC
Confidence 568999999965321 11111111 11111112337889998532 23344445444322 234577999
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHH
Q 014461 267 VDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KAL 306 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L 306 (424)
+|-...-..+....... +.+ +..+ -+|++| ++|
T Consensus 401 lDet~~~G~~l~i~~~~----~lP-I~yv--t~GQ~VPeDL 434 (484)
T PRK06995 401 LDEAASLGGALDVVIRY----KLP-LHYV--SNGQRVPEDL 434 (484)
T ss_pred CCCcccchHHHHHHHHH----CCC-eEEE--ecCCCChhhh
Confidence 99876544454444433 333 4444 367887 554
No 403
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.70 E-value=0.00033 Score=67.96 Aligned_cols=94 Identities=9% Similarity=0.136 Sum_probs=50.2
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHH--HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRV--ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~--~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
...+++.|.|..++. .+...+ ...+...-..|.++.|+|+......... ......++.. --++|+
T Consensus 91 ~d~IvIEttG~a~p~------~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~-~~~~~~Qi~~------AD~Ivl 157 (318)
T PRK11537 91 FDRLVIECTGMADPG------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ-FTIAQSQVGY------ADRILL 157 (318)
T ss_pred CCEEEEECCCccCHH------HHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccc-cHHHHHHHHh------CCEEEE
Confidence 457899999987542 111111 0111122235889999999642211111 1111122221 148899
Q ss_pred ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
||+|+.... ......++..++..+++.++
T Consensus 158 nK~Dl~~~~---~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 158 TKTDVAGEA---EKLRERLARINARAPVYTVV 186 (318)
T ss_pred eccccCCHH---HHHHHHHHHhCCCCEEEEec
Confidence 999998743 34455556666666676553
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.69 E-value=0.00024 Score=69.77 Aligned_cols=129 Identities=15% Similarity=0.167 Sum_probs=69.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcc--eeecCCCCceeeEEE-------------------EE----------EecCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKV--AAVSRKTNTTTHEVL-------------------GV----------MTKAD 186 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~--~~~~~~~~tt~~~~~-------------------~~----------~~~~~ 186 (424)
++..|++||++||||||.+-.|..... ..-....-.|.++.+ .. ....+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 377899999999999999988764322 000000011111111 00 11235
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
++++|+||.|..... ......++...... ...-+.+|++++. ....+.+.++.+..... -=++++|
T Consensus 282 ~d~ILVDTaGrs~~D-----~~~i~el~~~~~~~-~~i~~~Lvlsat~----K~~dlkei~~~f~~~~i----~~~I~TK 347 (407)
T COG1419 282 CDVILVDTAGRSQYD-----KEKIEELKELIDVS-HSIEVYLVLSATT----KYEDLKEIIKQFSLFPI----DGLIFTK 347 (407)
T ss_pred CCEEEEeCCCCCccC-----HHHHHHHHHHHhcc-ccceEEEEEecCc----chHHHHHHHHHhccCCc----ceeEEEc
Confidence 689999999965321 11122233333333 3345667788753 23445566666653321 2467899
Q ss_pred CCCCCChhhHHHHH
Q 014461 267 VDLVTKKKDLLKVA 280 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~ 280 (424)
+|-...-..+...+
T Consensus 348 lDET~s~G~~~s~~ 361 (407)
T COG1419 348 LDETTSLGNLFSLM 361 (407)
T ss_pred ccccCchhHHHHHH
Confidence 99876544444433
No 405
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.69 E-value=0.0011 Score=65.24 Aligned_cols=169 Identities=17% Similarity=0.298 Sum_probs=90.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC-----------------cceeecCCCCceeeEE----------EEEE-ecCCc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT-----------------KVAAVSRKTNTTTHEV----------LGVM-TKADT 187 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~-----------------~~~~~~~~~~tt~~~~----------~~~~-~~~~~ 187 (424)
....+.+++||+--+|||||+.++... ..++ ...|.|..++ .-.+ ..-..
T Consensus 14 T~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQ--S~aGktImTTEPKFiP~eAv~I~l~~~~~~ 91 (492)
T PF09547_consen 14 TGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQ--SGAGKTIMTTEPKFIPNEAVEITLDDGIKV 91 (492)
T ss_pred cCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCc--CCCCCceeccCCcccCCcceEEEecCCceE
Confidence 346789999999999999999998741 1111 1112121111 1111 11234
Q ss_pred cEEEEeCCCcccCC-CCCChhhhhhHHHHHH----------------hhccccc--EEEEEEeCCCCCCC--------ch
Q 014461 188 QICIFDTPGLMLNK-SGYSHKDVKVRVESAW----------------SAVNLFE--VLMVVFDVHRHLTS--------PD 240 (424)
Q Consensus 188 ~i~l~DtpG~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~aD--~vl~VvD~~~~~~~--------~~ 240 (424)
++.++|+.|+.-+. .++...+-..++...| ..+.+-. ++++--|.| +++ .+
T Consensus 92 kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGS--i~dipRe~Y~eAE 169 (492)
T PF09547_consen 92 KVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGS--ITDIPRENYVEAE 169 (492)
T ss_pred EEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCC--ccCCChHHHHHHH
Confidence 68899999986332 1111111111222111 1122212 333444443 222 12
Q ss_pred HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 241 SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
..+.+-|++++ +|+++++|=.+=.. .+..++.+++.+.++.+ ++++++.. -.-+++...|.+.+.+.|
T Consensus 170 ervI~ELk~ig------KPFvillNs~~P~s--~et~~L~~eL~ekY~vp-Vlpvnc~~-l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 170 ERVIEELKEIG------KPFVILLNSTKPYS--EETQELAEELEEKYDVP-VLPVNCEQ-LREEDITRILEEVLYEFP 237 (492)
T ss_pred HHHHHHHHHhC------CCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCc-EEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence 24445555553 89999999887443 56677788888888887 88888743 233444444445554443
No 406
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.66 E-value=2.6e-05 Score=70.26 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=42.7
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
.....++|.||+.+.. .+++....+-+.+....-.=+++.++|+- -.+.+...+..++-.+.....-..|-|=|+.
T Consensus 96 ~~~Y~lFDcPGQVELf---t~h~~l~~I~~~Lek~~~rl~~V~LiDs~-ycs~p~~~iS~lL~sl~tMl~melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELF---THHDSLNKIFRKLEKLDYRLVAVNLIDSH-YCSDPSKFISSLLVSLATMLHMELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEE---eccchHHHHHHHHHHcCceEEEEEeeece-eeCChHHHHHHHHHHHHHHHhhcccchhhhh
Confidence 3568899999998753 22332222222233333233455566652 2333433333333222211112367888999
Q ss_pred cCCCCCC
Q 014461 266 KVDLVTK 272 (424)
Q Consensus 266 K~Dl~~~ 272 (424)
|+|+...
T Consensus 172 K~Dl~~~ 178 (290)
T KOG1533|consen 172 KADLLKK 178 (290)
T ss_pred HhHHHHh
Confidence 9998754
No 407
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.64 E-value=0.00016 Score=63.85 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=41.4
Q ss_pred cEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461 224 EVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (424)
Q Consensus 224 D~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (424)
|++++|+|+..++...+..+.+.+. +.. .+.|+++|+||+|+.+. ..+.++.+.+.+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~-l~~---~~kp~IlVlNK~DL~~~-~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVL-QAG---GNKKLVLVLNKIDLVPK-ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHH-hcc---CCCCEEEEEehhhcCCH-HHHHHHHHHHHhh
Confidence 7899999998777766666666532 111 13789999999999864 5566677777654
No 408
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.0028 Score=63.06 Aligned_cols=150 Identities=13% Similarity=0.180 Sum_probs=79.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC----------CcceeecCCCCce-------------eeEEEEE----------Eec
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG----------TKVAAVSRKTNTT-------------THEVLGV----------MTK 184 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~----------~~~~~~~~~~~tt-------------~~~~~~~----------~~~ 184 (424)
.+..|+++|++|+||||.+..|.. .++..++..+... .-..... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 456899999999999999987752 1222222111100 0000100 012
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.+..++++||+|..... ...+ ..+...+.......-+++|+|++.+ ...+.+.+..+... .+-=+++
T Consensus 253 ~~~DlVLIDTaGr~~~~----~~~l-~el~~~l~~~~~~~e~~LVlsat~~----~~~~~~~~~~~~~~----~~~~~I~ 319 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD----FMKL-AEMKELLNACGRDAEFHLAVSSTTK----TSDVKEIFHQFSPF----SYKTVIF 319 (388)
T ss_pred CCCCEEEEcCCCCCccC----HHHH-HHHHHHHHhcCCCCeEEEEEcCCCC----HHHHHHHHHHhcCC----CCCEEEE
Confidence 46789999999975321 1111 1233333333322358899999643 23344555555421 1345789
Q ss_pred ecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh-HHHH
Q 014461 265 NKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL-KALT 307 (424)
Q Consensus 265 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi-~~L~ 307 (424)
+|.|-...-..+....... +.+ +..+ -+|++| +++.
T Consensus 320 TKlDet~~~G~~l~~~~~~----~~P-i~yi--t~Gq~vPeDl~ 356 (388)
T PRK12723 320 TKLDETTCVGNLISLIYEM----RKE-VSYV--TDGQIVPHNIS 356 (388)
T ss_pred EeccCCCcchHHHHHHHHH----CCC-EEEE--eCCCCChhhhh
Confidence 9999876544554444333 233 3333 367887 5554
No 409
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.0011 Score=65.90 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=69.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC-------cceeecCCCCce-----------e-e-EEEEE---------EecCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT-------KVAAVSRKTNTT-----------T-H-EVLGV---------MTKADTQ 188 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~-------~~~~~~~~~~tt-----------~-~-~~~~~---------~~~~~~~ 188 (424)
+...++++|++||||||++..|... .+..+...+..+ . . ..... +...+..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 3456899999999999999988642 122111111000 0 0 00000 0114678
Q ss_pred EEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc--cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 189 ICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN--LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 189 i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~--~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
++++||||..... ......+...+.... ...-+++|+|++.+ ...+.+.+..+... .+-=+|++|
T Consensus 302 ~VLIDTaGr~~rd-----~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~----~~~~~~~~~~f~~~----~~~glIlTK 368 (432)
T PRK12724 302 LILIDTAGYSHRN-----LEQLERMQSFYSCFGEKDSVENLLVLSSTSS----YHHTLTVLKAYESL----NYRRILLTK 368 (432)
T ss_pred EEEEeCCCCCccC-----HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC----HHHHHHHHHHhcCC----CCCEEEEEc
Confidence 9999999975321 111122333333221 23467889998643 22344444444321 224578999
Q ss_pred CCCCCChhhHHHHHH
Q 014461 267 VDLVTKKKDLLKVAE 281 (424)
Q Consensus 267 ~Dl~~~~~~~~~~~~ 281 (424)
.|-...-..+.....
T Consensus 369 LDEt~~~G~il~i~~ 383 (432)
T PRK12724 369 LDEADFLGSFLELAD 383 (432)
T ss_pred ccCCCCccHHHHHHH
Confidence 998765444444433
No 410
>PRK10867 signal recognition particle protein; Provisional
Probab=97.59 E-value=0.0022 Score=64.66 Aligned_cols=128 Identities=13% Similarity=0.173 Sum_probs=64.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHh-------CCcceeecCCCCcee-----------e--EEEEE---------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT-----------H--EVLGV--------------- 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~-------~~~~~~~~~~~~tt~-----------~--~~~~~--------------- 181 (424)
.++..|+++|.+|+||||++-.|. |.++..++..+.... . .....
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 346788999999999999666554 223332222211100 0 00000
Q ss_pred -EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE
Q 014461 182 -MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR 260 (424)
Q Consensus 182 -~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (424)
....++.++++||||..... ......+..... .-..+.+++|+|+..+ ....+..+.+.... ...
T Consensus 178 ~a~~~~~DvVIIDTaGrl~~d-----~~lm~eL~~i~~-~v~p~evllVlda~~g-----q~av~~a~~F~~~~---~i~ 243 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLHID-----EELMDELKAIKA-AVNPDEILLVVDAMTG-----QDAVNTAKAFNEAL---GLT 243 (433)
T ss_pred HHHhcCCCEEEEeCCCCcccC-----HHHHHHHHHHHH-hhCCCeEEEEEecccH-----HHHHHHHHHHHhhC---CCC
Confidence 01134679999999975321 111112222222 2346778999998531 22223333333211 123
Q ss_pred EEEEecCCCCCChhhHHH
Q 014461 261 VLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~~~~ 278 (424)
-+|+||.|-.........
T Consensus 244 giIlTKlD~~~rgG~als 261 (433)
T PRK10867 244 GVILTKLDGDARGGAALS 261 (433)
T ss_pred EEEEeCccCcccccHHHH
Confidence 578899996543333333
No 411
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.57 E-value=0.0019 Score=56.82 Aligned_cols=77 Identities=12% Similarity=0.151 Sum_probs=40.4
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..++++||||..... ......+... ......|.+++|+|+... . . ..+....+.... + ..-+|+|
T Consensus 82 ~~d~viiDt~g~~~~~-----~~~l~~l~~l-~~~~~~~~~~lVv~~~~~--~--~-~~~~~~~~~~~~--~-~~~vilt 147 (173)
T cd03115 82 NFDVVIVDTAGRLQID-----ENLMEELKKI-KRVVKPDEVLLVVDAMTG--Q--D-AVNQAKAFNEAL--G-ITGVILT 147 (173)
T ss_pred CCCEEEEECcccchhh-----HHHHHHHHHH-HhhcCCCeEEEEEECCCC--h--H-HHHHHHHHHhhC--C-CCEEEEE
Confidence 5568999999975321 1111222222 122347999999998522 1 1 112223221111 1 2567889
Q ss_pred cCCCCCChhhH
Q 014461 266 KVDLVTKKKDL 276 (424)
Q Consensus 266 K~Dl~~~~~~~ 276 (424)
|+|........
T Consensus 148 k~D~~~~~g~~ 158 (173)
T cd03115 148 KLDGDARGGAA 158 (173)
T ss_pred CCcCCCCcchh
Confidence 99987654333
No 412
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.0044 Score=53.08 Aligned_cols=79 Identities=10% Similarity=0.158 Sum_probs=46.0
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..||++ ++|--.++......+.+.+++.... +.|++.++.+-+.- ..++.+....+. ++. .+
T Consensus 98 ~~~aDvI--IIDEIGpMElks~~f~~~ve~vl~~---~kpliatlHrrsr~-------P~v~~ik~~~~v--~v~---lt 160 (179)
T COG1618 98 LEEADVI--IIDEIGPMELKSKKFREAVEEVLKS---GKPLIATLHRRSRH-------PLVQRIKKLGGV--YVF---LT 160 (179)
T ss_pred hhcCCEE--EEecccchhhccHHHHHHHHHHhcC---CCcEEEEEecccCC-------hHHHHhhhcCCE--EEE---Ec
Confidence 4456865 4675445544445566666665433 46788888776541 234555544332 222 56
Q ss_pred CcChHHHHHHHHHhcc
Q 014461 300 GAGLKALTQYLMEQAV 315 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~ 315 (424)
-.|=+.++..|...+.
T Consensus 161 ~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 161 PENRNRILNEILSVLK 176 (179)
T ss_pred cchhhHHHHHHHHHhc
Confidence 6676788888777663
No 413
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.55 E-value=0.0012 Score=64.83 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=56.6
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHH-HHhhcccccEEEEEEeCCCCCCCc--------------------hHHHH
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVES-AWSAVNLFEVLMVVFDVHRHLTSP--------------------DSRVI 244 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~aD~vl~VvD~~~~~~~~--------------------~~~~~ 244 (424)
....+++.|.|...+. .+...+.. .+...-..|.++.|+|+....... ...+.
T Consensus 92 ~~d~IvIEtsG~a~P~------~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (341)
T TIGR02475 92 RPDHILIETSGLALPK------PLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLE 165 (341)
T ss_pred CCCEEEEeCCCCCCHH------HHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHH
Confidence 3567899999987652 22122210 111122458899999996321100 00011
Q ss_pred HH-HHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCC-CCeEEEEecCCCcChHHHHH
Q 014461 245 RL-IERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPG-YERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 245 ~~-l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~iSA~~g~gi~~L~~ 308 (424)
.. ..++. .--++|+||+|+... +.+......+....+ ...++.++ ........+++
T Consensus 166 ~~~~~Qi~------~AD~IvlnK~Dl~~~-~~l~~~~~~l~~~~~~~a~i~~~~-~~~v~~~~ll~ 223 (341)
T TIGR02475 166 ELFEDQLA------CADLVILNKADLLDA-AGLARVRAEIAAELPRAVKIVEAS-HGEVDARVLLG 223 (341)
T ss_pred HHHHHHHH------hCCEEEEeccccCCH-HHHHHHHHHHHHhCCCCCEEEEcc-cCCCCHHHHhC
Confidence 11 12222 124889999999875 456666666666444 34566553 22344455444
No 414
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.50 E-value=0.0035 Score=63.13 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=41.3
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.++.++++||||..... ......+..... .-..|.+++|+|+..+ ....+....+.... ...=+|+
T Consensus 181 ~~~DvVIIDTaGr~~~d-----~~l~~eL~~i~~-~~~p~e~lLVvda~tg-----q~~~~~a~~f~~~v---~i~giIl 246 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQID-----EELMEELAAIKE-ILNPDEILLVVDAMTG-----QDAVNTAKTFNERL---GLTGVVL 246 (428)
T ss_pred cCCCEEEEeCCCccccC-----HHHHHHHHHHHH-hhCCceEEEEEeccch-----HHHHHHHHHHHhhC---CCCEEEE
Confidence 34679999999975321 111122222222 3346888999998532 12222333332111 1235679
Q ss_pred ecCCCCCChhhHHH
Q 014461 265 NKVDLVTKKKDLLK 278 (424)
Q Consensus 265 NK~Dl~~~~~~~~~ 278 (424)
||+|-.........
T Consensus 247 TKlD~~~~~G~~ls 260 (428)
T TIGR00959 247 TKLDGDARGGAALS 260 (428)
T ss_pred eCccCcccccHHHH
Confidence 99996543333333
No 415
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00032 Score=69.64 Aligned_cols=114 Identities=23% Similarity=0.270 Sum_probs=69.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC---------------ceeeEE-EEE---------------EecC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN---------------TTTHEV-LGV---------------MTKA 185 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~---------------tt~~~~-~~~---------------~~~~ 185 (424)
....++.++.+...|||||..+|....--..+...+ .|.... ... -...
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 456678899999999999999998532211112222 111111 110 0112
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~ 264 (424)
+.-++++|.||+.++.+. + ...++-.|..++|+|.-++.--+.+.++ +.+.+. +.-++++
T Consensus 97 ~FLiNLIDSPGHVDFSSE---------V---TAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ER-------IkPvlv~ 157 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSE---------V---TAALRVTDGALVVVDCVSGVCVQTETVLRQAIAER-------IKPVLVM 157 (842)
T ss_pred ceeEEeccCCCcccchhh---------h---hheeEeccCcEEEEEccCceEechHHHHHHHHHhh-------ccceEEe
Confidence 345889999999876421 2 2346677999999998777655555443 333321 2236789
Q ss_pred ecCCC
Q 014461 265 NKVDL 269 (424)
Q Consensus 265 NK~Dl 269 (424)
||+|.
T Consensus 158 NK~DR 162 (842)
T KOG0469|consen 158 NKMDR 162 (842)
T ss_pred ehhhH
Confidence 99995
No 416
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.43 E-value=0.00098 Score=64.66 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=49.1
Q ss_pred EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--CCCchH---HH---HHHHHHhcc
Q 014461 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--LTSPDS---RV---IRLIERMGK 252 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--~~~~~~---~~---~~~l~~~~~ 252 (424)
.+...+..+.++|.+|+.... +.......++++|+||++.++- ....+. .+ +.+.+.+..
T Consensus 189 ~F~~k~~~f~~~DvGGQRseR------------rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSER------------KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHh------------hhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 356677889999999976432 2223456888999999998731 111121 12 222222221
Q ss_pred -CCCCCCcEEEEEecCCCCC
Q 014461 253 -QAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 253 -~~~~~~p~ilV~NK~Dl~~ 271 (424)
....+.++|+.+||.|+-.
T Consensus 257 ~~~F~~tsiiLFLNK~DLFe 276 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFE 276 (354)
T ss_pred CcccccCcEEEEeecHHHHH
Confidence 2223578999999999976
No 417
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00066 Score=75.30 Aligned_cols=126 Identities=14% Similarity=0.200 Sum_probs=69.9
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceee-------cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAV-------SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~-------~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
+=-+|+|+||+||||++..- |.++... ...++ |+++-. +-+..-++|||.|-..........+ ...
T Consensus 126 PWy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdw----wf~deaVlIDtaGry~~q~s~~~~~-~~~ 198 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDW----WFTDEAVLIDTAGRYITQDSADEVD-RAE 198 (1188)
T ss_pred CceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCc----ccccceEEEcCCcceecccCcchhh-HHH
Confidence 34579999999999998763 3332211 11112 333221 2344568999999764432111111 111
Q ss_pred HHH------HHhhcccccEEEEEEeCCCCCCCchHH-------HHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 213 VES------AWSAVNLFEVLMVVFDVHRHLTSPDSR-------VIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 213 ~~~------~~~~~~~aD~vl~VvD~~~~~~~~~~~-------~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
... -+......|+|++.+|+++-.+..... +-.-|.++...-.-..|+++++||.|+...
T Consensus 199 W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 199 WLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 111 112235569999999987544433321 222245554443445899999999999874
No 418
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.36 E-value=0.00084 Score=67.79 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=72.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhC--------CcceeecCCCCce------------e-eEEEEE----------EecCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG--------TKVAAVSRKTNTT------------T-HEVLGV----------MTKADT 187 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~--------~~~~~~~~~~~tt------------~-~~~~~~----------~~~~~~ 187 (424)
+..++|+|++||||||++..|.. .++..+...+... . -..... -...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45789999999999998887643 1222222222100 0 000000 012356
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV 267 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~ 267 (424)
.++++||||..... ... ...+...+.......-+.+|++++.. ...+.+.+..+... .+--+++||+
T Consensus 301 DlVlIDt~G~~~~d----~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~----~~~l~~~~~~f~~~----~~~~vI~TKl 367 (424)
T PRK05703 301 DVILIDTAGRSQRD----KRL-IEELKALIEFSGEPIDVYLVLSATTK----YEDLKDIYKHFSRL----PLDGLIFTKL 367 (424)
T ss_pred CEEEEeCCCCCCCC----HHH-HHHHHHHHhccCCCCeEEEEEECCCC----HHHHHHHHHHhCCC----CCCEEEEecc
Confidence 89999999975321 111 11222222212223567788888532 23344444444421 1235789999
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461 268 DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (424)
Q Consensus 268 Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 303 (424)
|-...-..+...+... +.+ +..+ -+|++|
T Consensus 368 Det~~~G~i~~~~~~~----~lP-v~yi--t~Gq~V 396 (424)
T PRK05703 368 DETSSLGSILSLLIES----GLP-ISYL--TNGQRV 396 (424)
T ss_pred cccccccHHHHHHHHH----CCC-EEEE--eCCCCC
Confidence 9865433333333222 333 3334 356775
No 419
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.005 Score=58.22 Aligned_cols=146 Identities=16% Similarity=0.242 Sum_probs=77.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC------cceeecCCCCc--------ee----e-EEEEEE-------------ecC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTNT--------TT----H-EVLGVM-------------TKA 185 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~------~~~~~~~~~~t--------t~----~-~~~~~~-------------~~~ 185 (424)
+..+++++|++|+||||++..+.+. .+..+...+.. +. . ...... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4578999999999999999987542 12211111110 00 0 000000 012
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..+.++||||..... ...+ ..+...+. ....|.+++|+|++.. .....+.++.+... .+-=++++
T Consensus 154 ~~D~ViIDt~Gr~~~~----~~~l-~el~~~~~-~~~~~~~~LVl~a~~~----~~d~~~~~~~f~~~----~~~~~I~T 219 (270)
T PRK06731 154 RVDYILIDTAGKNYRA----SETV-EEMIETMG-QVEPDYICLTLSASMK----SKDMIEIITNFKDI----HIDGIVFT 219 (270)
T ss_pred CCCEEEEECCCCCcCC----HHHH-HHHHHHHh-hhCCCeEEEEEcCccC----HHHHHHHHHHhCCC----CCCEEEEE
Confidence 5689999999976321 1112 22222222 2345678999998532 23344556665432 23467899
Q ss_pred cCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChH
Q 014461 266 KVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304 (424)
Q Consensus 266 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~ 304 (424)
|.|....-..+....... +.+ +..+ -+|+++.
T Consensus 220 KlDet~~~G~~l~~~~~~----~~P-i~~i--t~Gq~vp 251 (270)
T PRK06731 220 KFDETASSGELLKIPAVS----SAP-IVLM--TDGQDVK 251 (270)
T ss_pred eecCCCCccHHHHHHHHH----CcC-EEEE--eCCCCCC
Confidence 999876544444443332 333 4334 2466654
No 420
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.24 E-value=0.002 Score=54.67 Aligned_cols=100 Identities=13% Similarity=0.102 Sum_probs=55.9
Q ss_pred EEecCCCChhHHHHhHhC------CcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 144 IIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 144 vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
.-|.+|+||||+.-.+.. .....+.-.++.+. -.+.+.++|||+.... ...
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~---------~~yd~VIiD~p~~~~~--------------~~~ 61 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLAN---------LDYDYIIIDTGAGISD--------------NVL 61 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCC---------CCCCEEEEECCCCCCH--------------HHH
Confidence 456889999999776652 22222222211110 1167899999985421 112
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
..+..+|.++++++.+...-.......+.+.+.. ...++.+|+|+++..
T Consensus 62 ~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~----~~~~~~lVvN~~~~~ 110 (139)
T cd02038 62 DFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL----RVLNFRVVVNRAESP 110 (139)
T ss_pred HHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc----CCCCEEEEEeCCCCH
Confidence 3456689999999985311111123334443322 234678999999754
No 421
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.002 Score=61.63 Aligned_cols=151 Identities=17% Similarity=0.250 Sum_probs=78.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC------Ccce-------------------------eecCCCCceeeEEEEE---
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG------TKVA-------------------------AVSRKTNTTTHEVLGV--- 181 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~------~~~~-------------------------~~~~~~~tt~~~~~~~--- 181 (424)
..++..++++|-+|+||||-+-.|.. .++. .++...+ .++....
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G--~DpAaVafDA 213 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEG--ADPAAVAFDA 213 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCC--CCcHHHHHHH
Confidence 34578899999999999999988763 1111 0111000 0000000
Q ss_pred ---EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhccccc-----EEEEEEeCCCCCCCchHHHHHHHHHhccC
Q 014461 182 ---MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFE-----VLMVVFDVHRHLTSPDSRVIRLIERMGKQ 253 (424)
Q Consensus 182 ---~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD-----~vl~VvD~~~~~~~~~~~~~~~l~~~~~~ 253 (424)
-...+..+.++||.|-...+. .+...++.....+...+ -+++++|++-+... +...+.+...
T Consensus 214 i~~Akar~~DvvliDTAGRLhnk~-----nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~ea 283 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLHNKK-----NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEA 283 (340)
T ss_pred HHHHHHcCCCEEEEeCcccccCch-----hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHh
Confidence 012467799999999875532 22222333333333333 38888999754221 1122222211
Q ss_pred CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 254 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~ 308 (424)
.. -.=++++|+|-...-..+..+...+ +.+ +..+ --|+++++|..
T Consensus 284 v~---l~GiIlTKlDgtAKGG~il~I~~~l----~~P-I~fi--GvGE~~~DL~~ 328 (340)
T COG0552 284 VG---LDGIILTKLDGTAKGGIILSIAYEL----GIP-IKFI--GVGEGYDDLRP 328 (340)
T ss_pred cC---CceEEEEecccCCCcceeeeHHHHh----CCC-EEEE--eCCCChhhccc
Confidence 11 1247899999544323344433333 333 5555 34788887653
No 422
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.0012 Score=60.99 Aligned_cols=129 Identities=16% Similarity=0.217 Sum_probs=69.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee---ecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCC-CChhhh-
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSG-YSHKDV- 209 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~-~~~~~~- 209 (424)
.-.++|+-||.+|.|||||++.|.+.++.. ....+........+.+...+. .+.++||.|+.+.-.. -.+..+
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 346899999999999999999999876641 111122222222222222333 4789999999764321 111111
Q ss_pred ---hh----------HHHHHHhhcc--cccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 210 ---KV----------RVESAWSAVN--LFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 210 ---~~----------~~~~~~~~~~--~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
.. .+++++..+. ..+++++.+..+.+.... +... ++.+.. ...+|-|+-|.|....
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvt---mk~Lds----kVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVT---MKKLDS----KVNIIPVIAKADTISK 191 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHH---HHHHhh----hhhhHHHHHHhhhhhH
Confidence 11 1223333333 347888888876432221 1111 222221 2446778889998764
No 423
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.12 E-value=0.0053 Score=54.29 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=42.1
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
..+.++++|||+.... .....+..+|.+++++..+.........+.+.++.. +.|+.+|+
T Consensus 91 ~~~d~viiDtpp~~~~--------------~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~------~~~~~vV~ 150 (179)
T cd03110 91 EGAELIIIDGPPGIGC--------------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHF------GIPVGVVI 150 (179)
T ss_pred cCCCEEEEECcCCCcH--------------HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHc------CCCEEEEE
Confidence 5678999999975421 112334668999999988632111122344444433 25688999
Q ss_pred ecCCCCC
Q 014461 265 NKVDLVT 271 (424)
Q Consensus 265 NK~Dl~~ 271 (424)
||+|...
T Consensus 151 N~~~~~~ 157 (179)
T cd03110 151 NKYDLND 157 (179)
T ss_pred eCCCCCc
Confidence 9999754
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.12 E-value=0.0029 Score=50.55 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=40.6
Q ss_pred EEEEe-cCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 142 VGIIG-APNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 142 v~vvG-~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
|++.| ..|+||||+.-.|...-.. .+.. ....-......+.++|+|+.... .....+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~---vl~~d~d~~~d~viiD~p~~~~~--------------~~~~~l 59 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKR---VLLIDLDPQYDYIIIDTPPSLGL--------------LTRNAL 59 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCc---EEEEeCCCCCCEEEEeCcCCCCH--------------HHHHHH
Confidence 56666 6799999988876532110 0100 00000011267899999996532 011334
Q ss_pred ccccEEEEEEeCC
Q 014461 221 NLFEVLMVVFDVH 233 (424)
Q Consensus 221 ~~aD~vl~VvD~~ 233 (424)
..+|.++++++.+
T Consensus 60 ~~ad~viv~~~~~ 72 (104)
T cd02042 60 AAADLVLIPVQPS 72 (104)
T ss_pred HHCCEEEEeccCC
Confidence 5689999999885
No 425
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.10 E-value=0.0023 Score=62.18 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=58.5
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.......+..+|+||.|+|+.++++.....+.+++..... +...|+|+||+|++.. +.+.+++..++..++.. +
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~g----nKkLILVLNK~DLVPr-Ev~e~Wl~YLr~~~ptv-~ 210 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHG----NKKLILVLNKIDLVPR-EVVEKWLVYLRREGPTV-A 210 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccC----CceEEEEeehhccCCH-HHHHHHHHHHHhhCCcc-e
Confidence 3444456677899999999999888777777777754432 3668999999999975 78888888888765543 4
Q ss_pred EEEec
Q 014461 293 FMTSG 297 (424)
Q Consensus 293 ~~iSA 297 (424)
|..|.
T Consensus 211 fkast 215 (435)
T KOG2484|consen 211 FKAST 215 (435)
T ss_pred eeccc
Confidence 44443
No 426
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.07 E-value=0.0013 Score=46.09 Aligned_cols=47 Identities=15% Similarity=0.334 Sum_probs=25.7
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCC
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVD 268 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~D 268 (424)
.-.++|+|++|.+.....+-..-..+.+++.... .+.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3468999999998766555443333444433221 2589999999998
No 427
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.07 E-value=0.0016 Score=59.18 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=31.3
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
...+|.++.|+|.+...-.....+.++-.+++ -.++.+|+||+|-.
T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg-----~k~i~~V~NKv~e~ 198 (255)
T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELG-----IKRIFVVLNKVDEE 198 (255)
T ss_pred ccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhC-----CceEEEEEeeccch
Confidence 46789999999997433233334545555544 25799999999965
No 428
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.05 E-value=0.0015 Score=61.05 Aligned_cols=143 Identities=17% Similarity=0.271 Sum_probs=74.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC----cceeecCCCCc----------------------------eeeEEEEE---
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT----KVAAVSRKTNT----------------------------TTHEVLGV--- 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~----~~~~~~~~~~t----------------------------t~~~~~~~--- 181 (424)
.+.+.-.+.|.-|+|||||+|.++.+ +++.+-+..|- --.+....
T Consensus 55 ~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvr 134 (391)
T KOG2743|consen 55 ARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVR 134 (391)
T ss_pred CccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHH
Confidence 34455678999999999999998742 23222221111 00000000
Q ss_pred ------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-----CchHHHHHHHHHh
Q 014461 182 ------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-----SPDSRVIRLIERM 250 (424)
Q Consensus 182 ------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-----~~~~~~~~~l~~~ 250 (424)
-..+....+++.|-|+-.|.+-. . .......+..--.-|+|+-|+|+..... .++..+.+...++
T Consensus 135 aie~lvqkkGkfD~IllETTGlAnPaPia---~-~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Qi 210 (391)
T KOG2743|consen 135 AIENLVQKKGKFDHILLETTGLANPAPIA---S-MFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQI 210 (391)
T ss_pred HHHHHHhcCCCcceEEEeccCCCCcHHHH---H-HHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHH
Confidence 11233457899999998763210 0 0111122222233599999999953211 1112233333333
Q ss_pred ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 251 GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 251 ~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
.. .--+++||.|+... +.+....+.+...+...
T Consensus 211 A~------AD~II~NKtDli~~-e~~~~l~q~I~~INslA 243 (391)
T KOG2743|consen 211 AL------ADRIIMNKTDLVSE-EEVKKLRQRIRSINSLA 243 (391)
T ss_pred hh------hheeeeccccccCH-HHHHHHHHHHHHhhhHH
Confidence 21 13567999999986 55555666655544433
No 429
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.04 E-value=0.0078 Score=52.89 Aligned_cols=109 Identities=17% Similarity=0.200 Sum_probs=57.4
Q ss_pred EEecCCCChhHHHHhHh------CCcceeecCCCC-ceeeEEEE--------EEecCCccEEEEeCCCcccCCCCCChhh
Q 014461 144 IIGAPNAGKSSIINYMV------GTKVAAVSRKTN-TTTHEVLG--------VMTKADTQICIFDTPGLMLNKSGYSHKD 208 (424)
Q Consensus 144 vvG~~~~GKStLin~l~------~~~~~~~~~~~~-tt~~~~~~--------~~~~~~~~i~l~DtpG~~~~~~~~~~~~ 208 (424)
.-+..|+||||+.-.|. |.++..+.-.++ .......+ ....-...++++||||.... .
T Consensus 5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~-------~ 77 (179)
T cd02036 5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER-------G 77 (179)
T ss_pred eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH-------H
Confidence 34578999999988765 334333332221 11111000 00001117899999985421 0
Q ss_pred hhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 209 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
. ...+..+|.++++++.+...-.....+.+.++... .....+|+|++|...
T Consensus 78 ----~---~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~-----~~~~~iv~N~~~~~~ 128 (179)
T cd02036 78 ----F---ITAIAPADEALLVTTPEISSLRDADRVKGLLEALG-----IKVVGVIVNRVRPDM 128 (179)
T ss_pred ----H---HHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcC-----CceEEEEEeCCcccc
Confidence 1 12345689999999885321111123344444321 134678999998654
No 430
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.0029 Score=61.31 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=55.3
Q ss_pred hhhcccceEEEEEecCCCChhHHHHhHhC------CcceeecCCC-------------CceeeEEEEE------------
Q 014461 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKT-------------NTTTHEVLGV------------ 181 (424)
Q Consensus 133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~-------------~tt~~~~~~~------------ 181 (424)
.+...++-.|+++|-.|+||||.+..|.. .+.+.+.... ..++-+..+.
T Consensus 95 ~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~e 174 (483)
T KOG0780|consen 95 QPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASE 174 (483)
T ss_pred ccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHH
Confidence 34556677899999999999999887752 1211111000 0011111111
Q ss_pred ----EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC
Q 014461 182 ----MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH 235 (424)
Q Consensus 182 ----~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~ 235 (424)
+..+++.++++||.|-+... ...+.+ +..... .-..|.+|+|+|++-+
T Consensus 175 gv~~fKke~fdvIIvDTSGRh~qe----~sLfeE-M~~v~~-ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 175 GVDRFKKENFDVIIVDTSGRHKQE----ASLFEE-MKQVSK-AIKPDEIIFVMDASIG 226 (483)
T ss_pred HHHHHHhcCCcEEEEeCCCchhhh----HHHHHH-HHHHHh-hcCCCeEEEEEecccc
Confidence 22356789999999976431 111222 222222 2347999999999754
No 431
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.0051 Score=55.95 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=64.4
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcce----eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVA----AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVE 214 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~----~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~ 214 (424)
.+|.++|.--+||||+-.-....-.+ -.......|++. +...-..+.+||.||+..+.. .+.+.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s~D~e------- 96 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPSFDYE------- 96 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhh----hhhhhcceEEeecCCccccCCCccCHH-------
Confidence 56999999999999987654421110 011111111111 111223578999999986532 12111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+.+-++++|+|+.+...+....+...+.+.. .-.+++.+=+.+.|+|-..+
T Consensus 97 ---~iF~~~gALifvIDaQddy~eala~L~~~v~ray-kvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 97 ---MIFRGVGALIFVIDAQDDYMEALARLHMTVERAY-KVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred ---HHHhccCeEEEEEechHHHHHHHHHHHHHhhhee-ecCCCceEEEEEEeccCCch
Confidence 1235568999999995432222222222222222 12345667788999998764
No 432
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=96.87 E-value=0.007 Score=58.80 Aligned_cols=95 Identities=21% Similarity=0.213 Sum_probs=67.3
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+..+|+++.|+|+.+++......+...|++.. +.+.+|+|+|||||+.. -....++..+...++-. .|
T Consensus 205 ~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~----phKHli~vLNKvDLVPt-wvt~~Wv~~lSkeyPTi-Af 278 (572)
T KOG2423|consen 205 GELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEK----PHKHLIYVLNKVDLVPT-WVTAKWVRHLSKEYPTI-AF 278 (572)
T ss_pred HHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcC----CcceeEEEeeccccccH-HHHHHHHHHHhhhCcce-ee
Confidence 34455678889999999999888777777777777643 44669999999999874 34556666666665543 45
Q ss_pred EEecCCCcChHHHHHHHHHhc
Q 014461 294 MTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l 314 (424)
..|-.+..|-..|++.|.+..
T Consensus 279 HAsi~nsfGKgalI~llRQf~ 299 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQFA 299 (572)
T ss_pred ehhhcCccchhHHHHHHHHHH
Confidence 566666677666776665543
No 433
>PRK13695 putative NTPase; Provisional
Probab=96.83 E-value=0.049 Score=47.93 Aligned_cols=81 Identities=11% Similarity=0.256 Sum_probs=43.0
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|+ +++|--......+..+.+.+..... .+.|++++.||.... ...+.+....+. .++.+
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~---~~~~~i~v~h~~~~~-------~~~~~i~~~~~~-~i~~~-- 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLD---SEKPVIATLHRRSVH-------PFVQEIKSRPGG-RVYEL-- 156 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHh---CCCeEEEEECchhhH-------HHHHHHhccCCc-EEEEE--
Confidence 34556777 5778321112222334444444432 247899999985321 223344444443 36665
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
+.+|=+++...|.+.+
T Consensus 157 -~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 157 -TPENRDSLPFEILNRL 172 (174)
T ss_pred -cchhhhhHHHHHHHHH
Confidence 5566678887777654
No 434
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.82 E-value=0.0066 Score=48.88 Aligned_cols=94 Identities=12% Similarity=0.132 Sum_probs=52.5
Q ss_pred EecCCCChhHHHHhHhCC-------cceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 145 IGAPNAGKSSIINYMVGT-------KVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 145 vG~~~~GKStLin~l~~~-------~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
-+..|+||||+.-.|... .+..+.-.++ .+..++++|||+.... ...
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~------------~~~D~IIiDtpp~~~~--------------~~~ 59 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ------------FGDDYVVVDLGRSLDE--------------VSL 59 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC------------CCCCEEEEeCCCCcCH--------------HHH
Confidence 356889999987776532 1111111111 1227899999986531 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+..+|.++++++.+.........+.+++++.+.. +...+.+|+|+
T Consensus 60 ~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~lVvNr 106 (106)
T cd03111 60 AALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYS--LPAKIELVLNR 106 (106)
T ss_pred HHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCC--CcCceEEEecC
Confidence 234567999999988532222223455555554422 12357788885
No 435
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.81 E-value=0.006 Score=59.40 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=62.2
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+...+.+..+|+|+.|+|+.++.+.....+.+++.. .|.++|+||+|+.+. ....++.+.+....+.. .
T Consensus 25 ~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--------k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~~-~ 94 (322)
T COG1161 25 KRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--------KPKLLVLNKADLAPK-EVTKKWKKYFKKEEGIK-P 94 (322)
T ss_pred HHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--------CCcEEEEehhhcCCH-HHHHHHHHHHHhcCCCc-c
Confidence 3444556788899999999987776665555555543 456999999999985 45677777777766554 6
Q ss_pred EEEecCCCcChHHHH
Q 014461 293 FMTSGLKGAGLKALT 307 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~ 307 (424)
+.+|++++.+...+.
T Consensus 95 ~~v~~~~~~~~~~i~ 109 (322)
T COG1161 95 IFVSAKSRQGGKKIR 109 (322)
T ss_pred EEEEeecccCccchH
Confidence 778888888777666
No 436
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.67 E-value=0.011 Score=45.83 Aligned_cols=69 Identities=12% Similarity=0.159 Sum_probs=42.7
Q ss_pred EEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVN 221 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (424)
+++.|.+|+||||+...+...-.. .+.. ...+ + .+.++|+||....... . ......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~----v~~~--~--d~iivD~~~~~~~~~~---------~--~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKR----VLLI--D--DYVLIDTPPGLGLLVL---------L--CLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCe----EEEE--C--CEEEEeCCCCccchhh---------h--hhhhhh
Confidence 678899999999999988642211 0110 0111 1 7899999997643110 0 122345
Q ss_pred cccEEEEEEeCCC
Q 014461 222 LFEVLMVVFDVHR 234 (424)
Q Consensus 222 ~aD~vl~VvD~~~ 234 (424)
.+|.++++++...
T Consensus 58 ~~~~vi~v~~~~~ 70 (99)
T cd01983 58 AADLVIIVTTPEA 70 (99)
T ss_pred hCCEEEEecCCch
Confidence 6799999998853
No 437
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.67 E-value=0.0072 Score=60.66 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=61.9
Q ss_pred hHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 211 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
+..+..|..+..+|+||.++|+.+++-.....+.+++.+... .+..++++||.||... .....+.+.|...+ .
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~----~K~~~LLvNKaDLl~~-~qr~aWa~YF~~~n-i- 235 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDP----SKANVLLVNKADLLPP-EQRVAWAEYFRQNN-I- 235 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhcccc----ccceEEEEehhhcCCH-HHHHHHHHHHHhcC-c-
Confidence 568889999999999999999988766666667777776542 2557899999999986 44455666666543 3
Q ss_pred eEEEEecCC
Q 014461 291 RIFMTSGLK 299 (424)
Q Consensus 291 ~~~~iSA~~ 299 (424)
.++..||..
T Consensus 236 ~~vf~SA~~ 244 (562)
T KOG1424|consen 236 PVVFFSALA 244 (562)
T ss_pred eEEEEeccc
Confidence 488889875
No 438
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.60 E-value=0.013 Score=55.56 Aligned_cols=88 Identities=18% Similarity=0.235 Sum_probs=53.7
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCc
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGA 301 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~ 301 (424)
+.|-+++|+.+..+ ......+..+|-..... ++.-++++||+|+........+....+-...++. ++.+|++++.
T Consensus 79 n~d~~iiIvs~~~P-~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~-v~~~s~~~~~ 153 (301)
T COG1162 79 NNDQAIIVVSLVDP-DFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYP-VLFVSAKNGD 153 (301)
T ss_pred ccceEEEEEeccCC-CCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCee-EEEecCcCcc
Confidence 35666677766543 22223333333332222 3445778999999976332212233333345665 8999999999
Q ss_pred ChHHHHHHHHHhc
Q 014461 302 GLKALTQYLMEQA 314 (424)
Q Consensus 302 gi~~L~~~i~~~l 314 (424)
|+++|.+++....
T Consensus 154 ~~~~l~~~l~~~~ 166 (301)
T COG1162 154 GLEELAELLAGKI 166 (301)
T ss_pred cHHHHHHHhcCCe
Confidence 9999999987664
No 439
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.53 E-value=0.0076 Score=60.81 Aligned_cols=157 Identities=14% Similarity=0.166 Sum_probs=85.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
..++++|+|..++|||+|+.+++...+.. ...+...+.....+......-+.+.|-.|.. . .
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~-~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-~--------a-------- 90 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQ-DESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-D--------A-------- 90 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceecc-ccCCcCccceeeEEeeccceEeeeecccCCc-h--------h--------
Confidence 35789999999999999999977655432 2222223333333333444445566666621 1 0
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....+|++||||...+.... ..+..+-.++.. ......|+++|+++-=.... +.........+........+|+
T Consensus 91 Qft~wvdavIfvf~~~d~~s~--q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~e 168 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSF--QAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYE 168 (749)
T ss_pred hhhhhccceEEEEEeccccCH--HHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceee
Confidence 123446889999988543222 222222222221 11334677777776422111 1222222222222222234899
Q ss_pred EecCCCcChHHHHHHHHHhc
Q 014461 295 TSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l 314 (424)
.+|.+|.++...|+.+....
T Consensus 169 t~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 169 TCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred cchhhhhhHHHHHHHHHHHH
Confidence 99999999999888776543
No 440
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.39 E-value=0.0024 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.|+++|++|||||||+|.+.|-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999854
No 441
>PHA02518 ParA-like protein; Provisional
Probab=96.35 E-value=0.029 Score=50.79 Aligned_cols=71 Identities=6% Similarity=0.028 Sum_probs=39.2
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLC 263 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV 263 (424)
..+.++++||||.... .. ...+..+|.+|++++.+...-.....+.+++....... ...| ..++
T Consensus 75 ~~~d~viiD~p~~~~~-----------~~---~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv 139 (211)
T PHA02518 75 SGYDYVVVDGAPQDSE-----------LA---RAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT-DGLPKFAFI 139 (211)
T ss_pred ccCCEEEEeCCCCccH-----------HH---HHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC-CCCceEEEE
Confidence 3467999999986421 12 23355689999999885321111223444555433221 1233 4567
Q ss_pred EecCCCC
Q 014461 264 MNKVDLV 270 (424)
Q Consensus 264 ~NK~Dl~ 270 (424)
.|+.+..
T Consensus 140 ~n~~~~~ 146 (211)
T PHA02518 140 ISRAIKN 146 (211)
T ss_pred EeccCCc
Confidence 7877643
No 442
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.34 E-value=0.0026 Score=52.88 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=18.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..-+.+.|++|+|||++++.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999998643
No 443
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.31 E-value=0.0023 Score=57.18 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=33.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEE
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIF 192 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~ 192 (424)
++.-|+++|++|||||||+++|+..........+.||+..-.+. .+|....|+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE--~~G~dY~fv 55 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGD--EEGKTYFFL 55 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCC--CCCceeEeC
Confidence 45668999999999999999998653222233456666543321 234444554
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.29 E-value=0.046 Score=47.95 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=31.3
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecC-CCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKV-DLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
.+| ++|+|=-.++......+.+.+..+-. .+.|++.++-+. +.. .++.+....+.. ++.++..+
T Consensus 95 ~~~--liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~~~~--------~l~~i~~~~~~~-i~~vt~~N 159 (168)
T PF03266_consen 95 SSD--LIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRSDNP--------FLEEIKRRPDVK-IFEVTEEN 159 (168)
T ss_dssp CCH--EEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS--SC--------CHHHHHTTTTSE-EEE--TTT
T ss_pred CCC--EEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCCCcH--------HHHHHHhCCCcE-EEEeChhH
Confidence 445 67888655555554555555655543 247888888877 321 244555554443 77775543
No 445
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.11 Score=52.05 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=44.5
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.+..++++||.|-...... +...+. -+..+...|.|++|-.+--+ ++....+..+=+.+.....+..---+++
T Consensus 465 ~gfDVvLiDTAGR~~~~~~-----lm~~l~-k~~~~~~pd~i~~vgealvg-~dsv~q~~~fn~al~~~~~~r~id~~~l 537 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAP-----LMTSLA-KLIKVNKPDLILFVGEALVG-NDSVDQLKKFNRALADHSTPRLIDGILL 537 (587)
T ss_pred cCCCEEEEeccccccCChh-----HHHHHH-HHHhcCCCceEEEehhhhhC-cHHHHHHHHHHHHHhcCCCccccceEEE
Confidence 4678999999998754321 111111 12345678999999876432 2222233333333332222222235789
Q ss_pred ecCCCCCC
Q 014461 265 NKVDLVTK 272 (424)
Q Consensus 265 NK~Dl~~~ 272 (424)
+|+|-+++
T Consensus 538 tk~dtv~d 545 (587)
T KOG0781|consen 538 TKFDTVDD 545 (587)
T ss_pred Eeccchhh
Confidence 99998874
No 446
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.004 Score=51.06 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|+|.|+|||||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 447
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.20 E-value=0.019 Score=47.42 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.2
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
|++.|+||+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 67999999999999999875
No 448
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.20 E-value=0.004 Score=44.68 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHhHh
Q 014461 141 AVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~ 160 (424)
..+|.|++|+|||||+.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999875
No 449
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.19 E-value=0.12 Score=49.58 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.1
Q ss_pred EEEEEecCCCChhHHHHhHh
Q 014461 141 AVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~ 160 (424)
++++.|..||||||+.-.|.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA 21 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNIS 21 (290)
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 58999999999999877654
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.18 E-value=0.0044 Score=52.08 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~ 164 (424)
.++-.++|+|++|+|||||++.|.|...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred cCCCEEEEEccCCCccccceeeeccccc
Confidence 3456799999999999999999998643
No 451
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.14 E-value=0.0041 Score=54.42 Aligned_cols=27 Identities=33% Similarity=0.605 Sum_probs=23.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.|+|+|++|+|||||+|-+.|-.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 345679999999999999999998744
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.13 E-value=0.0049 Score=54.49 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..++++|++|+|||||++.|.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 358999999999999999998753
No 453
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.11 E-value=0.049 Score=51.86 Aligned_cols=118 Identities=15% Similarity=0.211 Sum_probs=65.9
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC---------C-
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS---------G- 203 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~---------~- 203 (424)
+...+..+++++|++|.|||++++++....-.. .+ .. ....++..+.+|.--.... +
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~-~d-~~-----------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ-SD-ED-----------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCC-CC-CC-----------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 556677889999999999999999998644321 11 11 1123667777775422110 0
Q ss_pred -C-ChhhhhhHHHHHHhhcccccEEEEEEeCCCCC----CCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 204 -Y-SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL----TSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 204 -~-~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~----~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
+ +..............++...+=++++|--+.. ......++..++.++.. -.+|+|.|+++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne--L~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE--LQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc--cCCCeEEeccH
Confidence 0 00111122223334455667777888853321 22234566777766532 24788888754
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.05 E-value=0.0049 Score=56.36 Aligned_cols=27 Identities=30% Similarity=0.562 Sum_probs=23.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.|+|+|++|+|||||+|.+-+-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 456679999999999999999987643
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0028 Score=55.67 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=33.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEe
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFD 193 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~D 193 (424)
++.-+++.|++|||||||+++|+... ...-....|||..-.+. .+|....|++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gE--v~G~dY~Fvs 55 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGE--VDGVDYFFVT 55 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCC--cCCceeEeCC
Confidence 35668999999999999999998765 22222334555443322 2344455543
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0063 Score=55.32 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=22.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..++|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35677889999999999999999754
No 457
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.93 E-value=0.058 Score=49.10 Aligned_cols=48 Identities=10% Similarity=-0.008 Sum_probs=27.1
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
.+|.++++++.+...-.....+.+.++++.... .-....+|.||++..
T Consensus 141 ~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~-~~~~~gvv~N~~~~~ 188 (212)
T cd02117 141 KADEIYIVTSGEFMALYAANNICKGIRKYAKSG-GVRLGGLICNSRNTD 188 (212)
T ss_pred cCcEEEEEecccHHHHHHHHHHHHHHHHhCccc-CCcEEEEEEeCCCCc
Confidence 578888888774211111234556666654321 112245899999854
No 458
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.92 E-value=0.0067 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
++..++++|++|+|||||++.|.+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999874
No 459
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=95.91 E-value=0.046 Score=51.70 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=16.7
Q ss_pred EEEEEecCCCChhHHHHhHh
Q 014461 141 AVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~ 160 (424)
.|+|.|..||||||+.-.|.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA 21 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLS 21 (267)
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 58888999999999777654
No 460
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.86 E-value=0.0076 Score=50.99 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHhHhCC
Q 014461 142 VGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~ 162 (424)
++++|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 461
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.81 E-value=0.013 Score=54.14 Aligned_cols=28 Identities=39% Similarity=0.707 Sum_probs=24.0
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...+...+++.|++|+|||||++.|.+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999998863
No 462
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.75 E-value=0.01 Score=52.92 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=22.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+..++++|++|+|||||+++|++.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34678999999999999999999863
No 463
>PRK07261 topology modulation protein; Provisional
Probab=95.74 E-value=0.0074 Score=53.15 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|+|+|++|+|||||...|..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 464
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.72 E-value=0.027 Score=52.17 Aligned_cols=70 Identities=9% Similarity=-0.030 Sum_probs=39.1
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
+++.++++||||.... .. ...+..+|.+|+.+..+...-.....+...+.+......++.|..+++
T Consensus 82 ~~yD~iiID~pp~~~~-----------~~---~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~ 147 (231)
T PRK13849 82 QGFDYALADTHGGSSE-----------LN---NTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILR 147 (231)
T ss_pred CCCCEEEEeCCCCccH-----------HH---HHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 3578999999996521 11 223456799988877642111111123333333222223346778999
Q ss_pred ecCC
Q 014461 265 NKVD 268 (424)
Q Consensus 265 NK~D 268 (424)
|.++
T Consensus 148 ~~~~ 151 (231)
T PRK13849 148 QRVP 151 (231)
T ss_pred Eecc
Confidence 9987
No 465
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.72 E-value=0.041 Score=54.14 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.6
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.....+++++|+.++|||||...|.+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHH
Confidence 45678999999999999999888775
No 466
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.71 E-value=0.034 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...+.+.|++|+|||+|++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998754
No 467
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.0077 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999754
No 468
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.67 E-value=0.085 Score=49.78 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=40.6
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCC-CceeeEEEEE-E--ecCCccEEEEeCCCccc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKT-NTTTHEVLGV-M--TKADTQICIFDTPGLML 199 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~-~tt~~~~~~~-~--~~~~~~i~l~DtpG~~~ 199 (424)
..+..-|+|+|+..+|||.|+|.|++.. ...++... .+|....... . ...+..+.++||.|+..
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 3455678999999999999999999743 12233322 2333222111 1 12345699999999976
No 469
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.66 E-value=0.0085 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 356689999999999999999999853
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.62 E-value=0.0085 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+++..|+|+|++|+|||||++.|.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
No 471
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.62 E-value=0.0092 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..++-.++++|++|+|||||++.+++
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34567899999999999999999863
No 472
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.61 E-value=0.0095 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.674 Sum_probs=22.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+++-.++++|++|||||||+++|.+
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4566789999999999999999987
No 473
>PRK08118 topology modulation protein; Reviewed
Probab=95.58 E-value=0.0091 Score=52.36 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+|.|+|++|+|||||...|..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999874
No 474
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.57 E-value=0.051 Score=49.75 Aligned_cols=103 Identities=9% Similarity=0.148 Sum_probs=56.8
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
+.+++|+||.|..... .. ..+..+|+||+=.-.+. .+.+ ....+++.+......+.+|.-++
T Consensus 83 ~~d~VlvDleG~as~~-----------~~---~aia~sDlVlIP~~~s~--lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl 146 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL-----------ND---YAIARSDLVLIPMQPSQ--LDADEAAKTFKWVRRLEKAERRDIPAAVL 146 (231)
T ss_pred CCCEEEEeCCCCCchh-----------HH---HHHHHCCEEEECCCCCh--HHHHHHHHHHHHHHHHHHhhCCCCCeeEE
Confidence 4578999999975321 11 12345798876543321 1111 24556666665544556899999
Q ss_pred EecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHH
Q 014461 264 MNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 264 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~ 308 (424)
+|++.-.... .......++.+ .+ ++|.++-.....+.+++.
T Consensus 147 ~Tr~~~~~~~-~~~~~~~e~~~--~l-pvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 147 FTRVPAARLT-RAQRIISEQLE--SL-PVLDTELHERDAFRAMFS 187 (231)
T ss_pred EecCCcchhh-HHHHHHHHHHh--cC-CccccccccHHHHHHHHH
Confidence 9999844321 22223333322 23 366666665555555554
No 475
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.57 E-value=0.011 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.573 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||+.++-+-.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 456679999999999999999997654
No 476
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.56 E-value=0.0099 Score=50.19 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=18.3
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
|+++|+||+||||++..|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999873
No 477
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.55 E-value=0.011 Score=43.60 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEecCCCChhHHHHhHhCC
Q 014461 142 VGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~ 162 (424)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998753
No 478
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.52 E-value=0.011 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356678999999999999999999853
No 479
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.52 E-value=0.072 Score=46.56 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=56.5
Q ss_pred EEEecCCCChhHHHHhHh------CCcceeecCCCCce-eeE-EEE---------E---EecCCccEEEEeCCCcccCCC
Q 014461 143 GIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-THE-VLG---------V---MTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 143 ~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-~~~-~~~---------~---~~~~~~~i~l~DtpG~~~~~~ 202 (424)
..-+.+|+||||+.-.|. |.++..+.-.++.+ ... ... . ....++.++++|||+....
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~-- 81 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGD-- 81 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcH--
Confidence 344678999999877664 33433332222211 100 000 0 1124678999999986421
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
. .. .. ..+..+|.+++|...+...........+.+.+.+. ...-+|+|+++-.
T Consensus 82 -----~---~~-~~-~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~-----~~~gvv~N~~~~~ 134 (169)
T cd02037 82 -----E---HL-TL-AQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI-----PILGVVENMSYFV 134 (169)
T ss_pred -----H---HH-HH-HhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCC-----CeEEEEEcCCccc
Confidence 0 01 11 11246799999997753111111233444444321 2245789999853
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.52 E-value=0.011 Score=54.12 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 456679999999999999999999853
No 481
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.51 E-value=0.011 Score=54.85 Aligned_cols=27 Identities=30% Similarity=0.612 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999853
No 482
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.0099 Score=54.07 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+ .++++|++|+|||||++.+.|.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 45 8999999999999999999985
No 483
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.50 E-value=0.011 Score=54.03 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999853
No 484
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=95.45 E-value=0.046 Score=49.52 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=22.8
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHh
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~ 160 (424)
....+..+.+++|...+||||++..+.
T Consensus 34 k~arrelkllllgtgesgkstfikqmr 60 (359)
T KOG0085|consen 34 KDARRELKLLLLGTGESGKSTFIKQMR 60 (359)
T ss_pred HhhhhhheeeeecCCCcchhhHHHHHH
Confidence 444567899999999999999999864
No 485
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.012 Score=51.91 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+...|+|.|.+|+|||||.+.|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3567899999999999999999753
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.43 E-value=0.012 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.489 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|..
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999998853
No 487
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.40 E-value=0.012 Score=53.23 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356689999999999999999998853
No 488
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.40 E-value=0.0075 Score=63.95 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~ 164 (424)
...+.|+++|..++||||.++.+.|..+
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~f 54 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVF 54 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhcccc
Confidence 4567899999999999999999998544
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.39 E-value=0.0088 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=17.4
Q ss_pred EEEEEecCCCChhHHHHhHhCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~ 162 (424)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999754
No 490
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.39 E-value=0.013 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|..
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456679999999999999999999853
No 491
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.38 E-value=0.013 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 455678999999999999999998854
No 492
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.38 E-value=0.015 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.4
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
..-.++++|++|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34678999999999999999986
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.013 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35667899999999999999999985
No 494
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.36 E-value=0.013 Score=54.47 Aligned_cols=25 Identities=32% Similarity=0.631 Sum_probs=22.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++-.++++|++|+|||||+..++|
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 4456789999999999999999998
No 495
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.34 E-value=0.013 Score=53.45 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 346679999999999999999999853
No 496
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.32 E-value=0.014 Score=53.22 Aligned_cols=26 Identities=15% Similarity=0.514 Sum_probs=23.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45667999999999999999999985
No 497
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.31 E-value=0.014 Score=53.42 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998753
No 498
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.31 E-value=0.013 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=22.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..|+|.|.+|+|||||++.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999763
No 499
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.30 E-value=0.014 Score=53.11 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999999853
No 500
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.30 E-value=0.014 Score=52.84 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999999853
Done!