Query 014461
Match_columns 424
No_of_seqs 626 out of 4392
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iev_A GTP-binding protein ERA 100.0 3.2E-52 1.1E-56 402.1 28.2 284 134-424 5-292 (308)
2 1wf3_A GTP-binding protein; GT 100.0 5.4E-51 1.8E-55 391.7 26.2 277 137-424 5-282 (301)
3 1ega_A Protein (GTP-binding pr 100.0 7.8E-48 2.7E-52 370.1 25.2 276 137-424 6-283 (301)
4 4dhe_A Probable GTP-binding pr 99.9 1.3E-22 4.5E-27 185.3 17.0 175 137-317 27-212 (223)
5 2gj8_A MNME, tRNA modification 99.9 6.2E-23 2.1E-27 180.4 13.4 164 138-316 3-166 (172)
6 3gee_A MNME, tRNA modification 99.9 5.2E-22 1.8E-26 201.1 21.9 166 137-315 231-397 (476)
7 2dyk_A GTP-binding protein; GT 99.9 1.3E-22 4.4E-27 175.1 12.8 160 140-315 2-161 (161)
8 4dcu_A GTP-binding protein ENG 99.9 6.5E-23 2.2E-27 207.8 12.4 173 137-316 193-369 (456)
9 2hjg_A GTP-binding protein ENG 99.9 5.8E-23 2E-27 207.0 11.2 172 137-316 173-349 (436)
10 3pqc_A Probable GTP-binding pr 99.9 1.6E-21 5.6E-26 173.6 19.4 170 137-315 21-193 (195)
11 2fg5_A RAB-22B, RAS-related pr 99.9 1.9E-22 6.4E-27 180.2 12.9 168 136-318 20-188 (192)
12 3i8s_A Ferrous iron transport 99.9 6.3E-23 2.2E-27 194.1 9.7 169 138-317 2-170 (274)
13 1mky_A Probable GTP-binding pr 99.9 1.9E-22 6.7E-27 203.3 13.4 249 45-316 81-355 (439)
14 1svi_A GTP-binding protein YSX 99.9 3.3E-21 1.1E-25 172.0 19.4 169 137-315 21-194 (195)
15 2xtp_A GTPase IMAP family memb 99.9 9E-23 3.1E-27 191.4 9.5 190 136-331 19-224 (260)
16 2nzj_A GTP-binding protein REM 99.9 4.8E-22 1.6E-26 173.9 13.3 165 138-315 3-168 (175)
17 2g6b_A RAS-related protein RAB 99.9 6.8E-22 2.3E-26 173.9 13.9 165 137-316 8-174 (180)
18 1z0j_A RAB-22, RAS-related pro 99.9 3.3E-22 1.1E-26 174.0 11.7 163 138-315 5-168 (170)
19 1r2q_A RAS-related protein RAB 99.9 3.7E-22 1.3E-26 173.5 11.9 165 137-316 4-169 (170)
20 2qpt_A EH domain-containing pr 99.9 4.3E-25 1.5E-29 227.8 -8.0 235 137-399 63-340 (550)
21 3q72_A GTP-binding protein RAD 99.9 6.5E-22 2.2E-26 171.7 13.2 161 139-315 2-163 (166)
22 4dkx_A RAS-related protein RAB 99.9 2E-22 7E-27 183.7 10.3 165 137-317 11-177 (216)
23 2qu8_A Putative nucleolar GTP- 99.9 3.1E-21 1.1E-25 177.3 18.0 174 137-315 27-204 (228)
24 3tw8_B RAS-related protein RAB 99.9 1.5E-21 5.1E-26 171.6 14.8 162 137-315 7-170 (181)
25 3tkl_A RAS-related protein RAB 99.9 1.1E-21 3.8E-26 175.1 13.9 166 135-316 12-179 (196)
26 2aka_B Dynamin-1; fusion prote 99.9 1.7E-22 5.7E-27 193.3 9.0 211 137-355 24-292 (299)
27 1mky_A Probable GTP-binding pr 99.9 8.2E-22 2.8E-26 198.8 14.5 166 140-317 2-167 (439)
28 2e87_A Hypothetical protein PH 99.9 1.1E-21 3.6E-26 192.7 14.4 171 137-315 165-335 (357)
29 2efe_B Small GTP-binding prote 99.9 8.8E-22 3E-26 173.3 12.5 166 137-317 10-176 (181)
30 3geh_A MNME, tRNA modification 99.9 8.3E-22 2.8E-26 198.8 13.9 165 137-318 222-386 (462)
31 1c1y_A RAS-related protein RAP 99.9 9.4E-22 3.2E-26 170.5 12.4 161 138-314 2-165 (167)
32 1ek0_A Protein (GTP-binding pr 99.9 6.5E-22 2.2E-26 172.0 11.3 163 138-315 2-168 (170)
33 3iby_A Ferrous iron transport 99.9 2.8E-22 9.5E-27 187.6 9.6 163 140-313 2-164 (256)
34 2bme_A RAB4A, RAS-related prot 99.9 2E-21 6.9E-26 171.9 14.0 163 137-315 8-172 (186)
35 2il1_A RAB12; G-protein, GDP, 99.9 2.3E-21 7.7E-26 173.2 14.3 165 136-315 23-189 (192)
36 3t5g_A GTP-binding protein RHE 99.9 3E-21 1E-25 170.2 14.9 165 137-318 4-171 (181)
37 1kao_A RAP2A; GTP-binding prot 99.9 9.8E-22 3.4E-26 170.1 11.5 161 138-315 2-165 (167)
38 2oil_A CATX-8, RAS-related pro 99.9 1.2E-21 4E-26 174.9 11.8 165 136-315 22-187 (193)
39 1zbd_A Rabphilin-3A; G protein 99.9 2.7E-21 9.4E-26 173.9 14.3 163 138-315 7-170 (203)
40 1wxq_A GTP-binding protein; st 99.9 1.7E-22 5.7E-27 200.3 6.5 258 140-411 1-367 (397)
41 1z0f_A RAB14, member RAS oncog 99.9 1.6E-21 5.4E-26 171.1 12.0 164 137-315 13-177 (179)
42 1u8z_A RAS-related protein RAL 99.9 1.5E-21 5.1E-26 169.1 11.7 161 138-315 3-166 (168)
43 1z08_A RAS-related protein RAB 99.9 1.6E-21 5.5E-26 169.7 11.9 162 138-315 5-168 (170)
44 2hup_A RAS-related protein RAB 99.9 3E-21 1E-25 173.9 13.8 166 136-316 26-193 (201)
45 2wji_A Ferrous iron transport 99.9 9.2E-22 3.1E-26 171.4 9.9 162 138-314 2-163 (165)
46 1jwy_B Dynamin A GTPase domain 99.9 1E-21 3.5E-26 189.4 11.2 208 137-355 22-298 (315)
47 3a1s_A Iron(II) transport prot 99.9 3.8E-21 1.3E-25 180.2 14.8 163 138-315 4-166 (258)
48 2fu5_C RAS-related protein RAB 99.9 1E-21 3.5E-26 173.5 10.3 162 138-315 7-170 (183)
49 2ew1_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 173.9 13.6 163 137-315 24-188 (201)
50 4djt_A GTP-binding nuclear pro 99.9 3.7E-21 1.3E-25 175.1 14.2 166 137-318 9-177 (218)
51 2gf9_A RAS-related protein RAB 99.9 2.4E-21 8.1E-26 172.4 12.6 164 137-315 20-184 (189)
52 2bcg_Y Protein YP2, GTP-bindin 99.9 7.4E-21 2.5E-25 171.6 15.9 163 137-315 6-170 (206)
53 1xzp_A Probable tRNA modificat 99.9 2.7E-21 9.2E-26 195.9 14.3 162 138-315 242-404 (482)
54 1zj6_A ADP-ribosylation factor 99.9 1.2E-20 4.2E-25 167.5 16.8 166 137-322 14-184 (187)
55 1wms_A RAB-9, RAB9, RAS-relate 99.9 6.4E-21 2.2E-25 167.2 14.6 163 137-316 5-174 (177)
56 2fn4_A P23, RAS-related protei 99.9 2.7E-21 9.3E-26 169.9 12.2 164 136-316 6-172 (181)
57 1g16_A RAS-related protein SEC 99.9 3.9E-21 1.3E-25 167.2 13.0 161 139-316 3-165 (170)
58 1f6b_A SAR1; gtpases, N-termin 99.9 1.3E-20 4.3E-25 169.4 16.5 159 137-314 23-197 (198)
59 2lkc_A Translation initiation 99.9 7.1E-21 2.4E-25 167.1 14.6 159 137-316 6-171 (178)
60 2iwr_A Centaurin gamma 1; ANK 99.9 2.7E-21 9.2E-26 170.0 11.8 159 137-315 5-168 (178)
61 2y8e_A RAB-protein 6, GH09086P 99.8 2.1E-21 7.1E-26 170.3 10.7 163 137-315 12-176 (179)
62 3dz8_A RAS-related protein RAB 99.8 1E-21 3.6E-26 175.1 8.7 164 137-315 21-185 (191)
63 4dsu_A GTPase KRAS, isoform 2B 99.8 5.1E-21 1.7E-25 169.5 12.6 160 138-315 3-165 (189)
64 2erx_A GTP-binding protein DI- 99.8 4.1E-21 1.4E-25 167.2 11.7 163 138-316 2-167 (172)
65 3b1v_A Ferrous iron uptake tra 99.8 4.5E-21 1.6E-25 180.8 12.9 162 139-316 3-164 (272)
66 3bc1_A RAS-related protein RAB 99.8 9.4E-21 3.2E-25 168.4 14.2 164 136-315 8-184 (195)
67 2hjg_A GTP-binding protein ENG 99.8 1.2E-21 4.1E-26 197.4 9.5 164 139-317 3-166 (436)
68 3reg_A RHO-like small GTPase; 99.8 8.5E-21 2.9E-25 169.5 14.0 165 136-317 20-189 (194)
69 2a5j_A RAS-related protein RAB 99.8 3.6E-21 1.2E-25 171.6 11.5 163 137-315 19-183 (191)
70 3oes_A GTPase rhebl1; small GT 99.8 4.5E-21 1.6E-25 172.5 12.2 164 137-317 22-188 (201)
71 2p5s_A RAS and EF-hand domain 99.8 3.1E-21 1E-25 173.3 11.0 164 137-315 26-196 (199)
72 2bov_A RAla, RAS-related prote 99.8 1.1E-20 3.8E-25 170.0 14.5 163 136-315 11-176 (206)
73 1m2o_B GTP-binding protein SAR 99.8 3E-20 1E-24 165.8 17.1 157 138-313 22-189 (190)
74 1fzq_A ADP-ribosylation factor 99.8 4.7E-20 1.6E-24 163.1 18.2 160 137-315 14-177 (181)
75 1upt_A ARL1, ADP-ribosylation 99.8 1.8E-20 6.2E-25 163.2 15.3 160 137-316 5-169 (171)
76 1x3s_A RAS-related protein RAB 99.8 6E-21 2.1E-25 170.0 12.5 171 135-321 11-183 (195)
77 1mh1_A RAC1; GTP-binding, GTPa 99.8 5.7E-21 1.9E-25 168.8 12.1 165 137-318 3-182 (186)
78 2o52_A RAS-related protein RAB 99.8 5.1E-21 1.7E-25 172.2 11.9 163 137-315 23-187 (200)
79 2a9k_A RAS-related protein RAL 99.8 6.9E-21 2.4E-25 168.2 12.6 162 137-315 16-180 (187)
80 1r8s_A ADP-ribosylation factor 99.8 1.7E-20 5.9E-25 162.3 14.8 156 140-315 1-161 (164)
81 2hxs_A RAB-26, RAS-related pro 99.8 1.9E-21 6.4E-26 170.7 8.8 166 137-318 4-175 (178)
82 3q85_A GTP-binding protein REM 99.8 7.3E-21 2.5E-25 165.5 12.4 162 139-315 2-166 (169)
83 4gzl_A RAS-related C3 botulinu 99.8 8.5E-21 2.9E-25 171.3 13.2 161 137-314 28-203 (204)
84 2h17_A ADP-ribosylation factor 99.8 3.6E-20 1.2E-24 163.6 16.7 159 135-313 17-180 (181)
85 3k53_A Ferrous iron transport 99.8 1.1E-20 3.6E-25 178.5 14.1 167 138-318 2-168 (271)
86 3cbq_A GTP-binding protein REM 99.8 1.4E-20 4.9E-25 168.7 14.3 166 136-316 20-188 (195)
87 3gj0_A GTP-binding nuclear pro 99.8 4.2E-22 1.4E-26 182.0 4.2 167 135-319 11-178 (221)
88 1moz_A ARL1, ADP-ribosylation 99.8 7.3E-20 2.5E-24 161.4 18.5 160 137-315 16-179 (183)
89 2ce2_X GTPase HRAS; signaling 99.8 1.3E-20 4.3E-25 162.7 13.3 160 138-315 2-164 (166)
90 3ihw_A Centg3; RAS, centaurin, 99.8 1.3E-20 4.5E-25 167.3 13.6 159 135-315 16-179 (184)
91 3kkq_A RAS-related protein M-R 99.8 1.1E-20 3.8E-25 166.8 12.9 165 134-315 13-181 (183)
92 3cph_A RAS-related protein SEC 99.8 1.1E-20 3.9E-25 170.9 13.2 162 137-315 18-181 (213)
93 4bas_A ADP-ribosylation factor 99.8 2.7E-20 9.2E-25 166.5 15.4 162 135-316 13-189 (199)
94 1z2a_A RAS-related protein RAB 99.8 6.6E-21 2.3E-25 165.3 10.9 161 138-315 4-166 (168)
95 2f7s_A C25KG, RAS-related prot 99.8 1E-20 3.5E-25 172.0 12.6 163 137-315 23-198 (217)
96 3clv_A RAB5 protein, putative; 99.8 2.2E-20 7.5E-25 167.2 14.4 159 138-315 6-203 (208)
97 1ksh_A ARF-like protein 2; sma 99.8 3.3E-20 1.1E-24 164.3 15.4 161 137-317 16-181 (186)
98 1z06_A RAS-related protein RAB 99.8 9E-21 3.1E-25 168.6 11.6 165 136-315 17-187 (189)
99 2j1l_A RHO-related GTP-binding 99.8 1.3E-20 4.6E-25 171.3 12.6 164 136-316 31-209 (214)
100 1zd9_A ADP-ribosylation factor 99.8 3.4E-20 1.1E-24 164.9 15.0 162 136-315 19-184 (188)
101 3cpj_B GTP-binding protein YPT 99.8 1.6E-20 5.6E-25 171.8 13.0 164 137-316 11-176 (223)
102 3q3j_B RHO-related GTP-binding 99.8 1.2E-20 3.9E-25 171.8 11.9 167 136-318 24-205 (214)
103 2h57_A ADP-ribosylation factor 99.8 6.3E-20 2.1E-24 163.3 16.5 163 136-315 18-186 (190)
104 1vg8_A RAS-related protein RAB 99.8 2.7E-20 9.2E-25 167.7 14.2 162 137-315 6-174 (207)
105 2x77_A ADP-ribosylation factor 99.8 8.1E-20 2.8E-24 162.3 17.1 160 137-316 20-184 (189)
106 2qtf_A Protein HFLX, GTP-bindi 99.8 3.9E-20 1.3E-24 181.4 16.3 172 140-319 180-357 (364)
107 3t1o_A Gliding protein MGLA; G 99.8 6.8E-21 2.3E-25 169.8 9.9 164 137-315 12-191 (198)
108 2atx_A Small GTP binding prote 99.8 2.8E-20 9.5E-25 166.0 13.9 162 137-315 16-192 (194)
109 1ky3_A GTP-binding protein YPT 99.8 1.3E-20 4.6E-25 165.6 11.6 164 137-315 6-177 (182)
110 2q3h_A RAS homolog gene family 99.8 3.4E-20 1.2E-24 166.4 13.5 163 136-315 17-194 (201)
111 3con_A GTPase NRAS; structural 99.8 2.5E-20 8.6E-25 165.6 12.5 163 135-315 17-182 (190)
112 2j0v_A RAC-like GTP-binding pr 99.8 2.9E-20 9.8E-25 168.5 12.9 164 137-317 7-181 (212)
113 2b6h_A ADP-ribosylation factor 99.8 4.6E-20 1.6E-24 164.8 14.1 159 137-315 27-190 (192)
114 2wjg_A FEOB, ferrous iron tran 99.8 1.9E-20 6.5E-25 166.1 11.4 166 137-317 5-170 (188)
115 2gf0_A GTP-binding protein DI- 99.8 2.9E-20 9.9E-25 166.3 12.6 164 137-317 6-172 (199)
116 3l0i_B RAS-related protein RAB 99.8 9.3E-22 3.2E-26 176.7 2.7 163 137-315 31-195 (199)
117 3zvr_A Dynamin-1; hydrolase, D 99.8 1.9E-20 6.5E-25 197.1 13.1 215 137-363 49-335 (772)
118 1lnz_A SPO0B-associated GTP-bi 99.8 9.8E-21 3.4E-25 183.9 10.0 171 140-319 159-333 (342)
119 3lxw_A GTPase IMAP family memb 99.8 2.4E-20 8.1E-25 173.7 12.1 189 136-326 18-219 (247)
120 2yc2_C IFT27, small RAB-relate 99.8 7.3E-21 2.5E-25 171.3 8.2 164 137-315 18-191 (208)
121 3bwd_D RAC-like GTP-binding pr 99.8 8.5E-21 2.9E-25 167.1 8.4 162 137-315 6-180 (182)
122 2atv_A RERG, RAS-like estrogen 99.8 1.8E-20 6E-25 167.8 10.5 161 137-315 26-190 (196)
123 2g3y_A GTP-binding protein GEM 99.8 5.4E-20 1.9E-24 167.1 13.8 165 137-315 35-202 (211)
124 3llu_A RAS-related GTP-binding 99.8 6.9E-20 2.3E-24 164.1 14.1 168 135-314 16-195 (196)
125 3qq5_A Small GTP-binding prote 99.8 1.5E-20 5.2E-25 187.3 10.6 165 137-317 32-197 (423)
126 2fv8_A H6, RHO-related GTP-bin 99.8 6.3E-20 2.2E-24 165.8 13.5 163 137-317 23-201 (207)
127 3c5c_A RAS-like protein 12; GD 99.8 1.7E-20 6E-25 166.8 9.2 162 136-315 18-185 (187)
128 2gco_A H9, RHO-related GTP-bin 99.8 7.8E-20 2.7E-24 164.4 13.2 160 137-314 23-198 (201)
129 4dcu_A GTP-binding protein ENG 99.8 1.9E-20 6.7E-25 189.6 9.8 166 136-316 20-185 (456)
130 2x2e_A Dynamin-1; nitration, h 99.8 8.4E-21 2.9E-25 186.0 6.3 207 137-353 29-295 (353)
131 1m7b_A RND3/RHOE small GTP-bin 99.8 5.8E-20 2E-24 162.7 10.9 162 137-315 5-182 (184)
132 2fh5_B SR-beta, signal recogni 99.8 1E-19 3.6E-24 165.0 12.4 161 138-314 6-214 (214)
133 2cjw_A GTP-binding protein GEM 99.8 1.2E-19 4E-24 162.3 12.4 164 138-315 5-171 (192)
134 2cxx_A Probable GTP-binding pr 99.8 6.9E-19 2.4E-23 155.9 16.2 164 140-316 2-184 (190)
135 1gwn_A RHO-related GTP-binding 99.8 1.1E-19 3.7E-24 164.3 10.5 161 137-314 26-202 (205)
136 3o47_A ADP-ribosylation factor 99.8 7.9E-19 2.7E-23 170.2 16.2 160 138-316 164-327 (329)
137 1puj_A YLQF, conserved hypothe 99.8 2.5E-20 8.6E-25 176.6 4.7 159 23-201 3-179 (282)
138 2wkq_A NPH1-1, RAS-related C3 99.8 1.3E-18 4.6E-23 168.2 15.9 164 136-316 152-330 (332)
139 3r7w_A Gtpase1, GTP-binding pr 99.8 8.8E-19 3E-23 168.3 14.4 168 138-314 2-179 (307)
140 3th5_A RAS-related C3 botulinu 99.7 1.2E-20 4E-25 170.1 0.0 162 137-314 28-203 (204)
141 3lvq_E ARF-GAP with SH3 domain 99.8 2.3E-18 7.8E-23 176.4 16.7 162 137-317 320-485 (497)
142 2zej_A Dardarin, leucine-rich 99.8 1.2E-18 4E-23 154.4 11.3 165 139-317 2-179 (184)
143 3tr5_A RF-3, peptide chain rel 99.8 8.6E-19 3E-23 179.6 11.5 117 138-272 12-149 (528)
144 3j2k_7 ERF3, eukaryotic polype 99.8 5.3E-18 1.8E-22 170.6 17.0 154 137-308 15-217 (439)
145 3sjy_A Translation initiation 99.8 1.9E-18 6.4E-23 172.3 13.2 164 136-317 5-193 (403)
146 1wb1_A Translation elongation 99.8 1.6E-18 5.5E-23 176.3 12.4 161 136-315 16-188 (482)
147 1f60_A Elongation factor EEF1A 99.8 7.4E-20 2.5E-24 185.1 1.7 150 138-305 6-201 (458)
148 2www_A Methylmalonic aciduria 99.7 1.1E-18 3.8E-23 170.4 7.9 189 137-354 72-317 (349)
149 3lxx_A GTPase IMAP family memb 99.7 1.2E-17 4.1E-22 154.5 13.9 174 136-316 26-214 (239)
150 1kk1_A EIF2gamma; initiation o 99.7 2.5E-17 8.4E-22 164.6 16.9 165 136-317 7-201 (410)
151 1pui_A ENGB, probable GTP-bind 99.7 6.6E-17 2.3E-21 145.9 17.7 174 136-318 23-201 (210)
152 2c78_A Elongation factor TU-A; 99.7 7.2E-18 2.5E-22 168.2 11.4 162 137-316 9-212 (405)
153 1s0u_A EIF-2-gamma, translatio 99.7 5.7E-17 2E-21 161.8 17.9 164 137-317 6-199 (408)
154 3t5d_A Septin-7; GTP-binding p 99.7 1.9E-17 6.4E-22 156.5 13.3 169 138-316 7-204 (274)
155 3izy_P Translation initiation 99.7 5.4E-19 1.9E-23 180.5 2.9 161 137-316 2-168 (537)
156 2f9l_A RAB11B, member RAS onco 99.7 2.4E-17 8.3E-22 147.8 13.2 161 139-315 5-167 (199)
157 3izq_1 HBS1P, elongation facto 99.7 1.2E-17 4.1E-22 174.2 12.6 153 137-306 165-362 (611)
158 2elf_A Protein translation elo 99.7 3.1E-17 1.1E-21 161.2 14.8 145 141-315 23-179 (370)
159 3cb4_D GTP-binding protein LEP 99.7 2.3E-17 7.7E-22 171.0 14.3 160 138-317 3-183 (599)
160 2ywe_A GTP-binding protein LEP 99.7 2.1E-17 7.2E-22 170.9 14.0 160 138-317 5-185 (600)
161 1d2e_A Elongation factor TU (E 99.7 2.3E-17 7.7E-22 164.1 13.8 161 138-316 2-195 (397)
162 3dpu_A RAB family protein; roc 99.7 4.7E-17 1.6E-21 168.0 15.5 163 136-319 38-211 (535)
163 3p26_A Elongation factor 1 alp 99.7 2.9E-17 9.8E-22 167.4 12.6 153 137-306 31-228 (483)
164 3mca_A HBS1, elongation factor 99.7 1.6E-18 5.4E-23 180.3 3.3 161 137-315 175-396 (592)
165 1oix_A RAS-related protein RAB 99.7 7.4E-17 2.5E-21 143.8 13.5 161 138-314 28-190 (191)
166 4a9a_A Ribosome-interacting GT 99.7 6.5E-17 2.2E-21 158.1 14.1 123 139-269 72-194 (376)
167 1zun_B Sulfate adenylate trans 99.7 9E-17 3.1E-21 161.6 15.5 153 137-306 22-214 (434)
168 1zo1_I IF2, translation initia 99.7 3.3E-18 1.1E-22 173.4 4.6 158 137-313 2-164 (501)
169 3p32_A Probable GTPase RV1496/ 99.7 6E-18 2.1E-22 165.8 6.1 188 134-349 74-317 (355)
170 1g7s_A Translation initiation 99.7 1.7E-16 5.8E-21 164.6 14.2 160 137-315 3-217 (594)
171 3cnl_A YLQF, putative uncharac 99.7 1.1E-17 3.6E-22 156.8 4.7 139 24-200 2-157 (262)
172 1jny_A EF-1-alpha, elongation 99.7 1E-16 3.5E-21 161.2 12.1 153 138-307 5-204 (435)
173 2j69_A Bacterial dynamin-like 99.7 1E-16 3.5E-21 169.8 12.5 166 136-315 66-324 (695)
174 3c5h_A Glucocorticoid receptor 99.7 2E-16 7E-21 147.7 12.8 90 222-314 162-253 (255)
175 2p67_A LAO/AO transport system 99.7 1.6E-16 5.4E-21 154.7 11.4 188 134-350 51-295 (341)
176 3r7w_B Gtpase2, GTP-binding pr 99.7 1.2E-16 4.3E-21 152.6 10.4 163 141-316 1-174 (331)
177 3avx_A Elongation factor TS, e 99.7 4.3E-16 1.5E-20 168.6 14.7 163 136-316 293-486 (1289)
178 2h5e_A Peptide chain release f 99.7 4.4E-16 1.5E-20 159.7 14.0 118 137-272 11-149 (529)
179 2xex_A Elongation factor G; GT 99.7 1.1E-16 3.9E-21 169.4 8.9 188 137-350 8-221 (693)
180 1dar_A EF-G, elongation factor 99.6 1.3E-15 4.5E-20 161.1 16.0 118 137-272 10-144 (691)
181 1udx_A The GTP-binding protein 99.6 9.8E-16 3.4E-20 152.1 14.0 167 139-318 157-327 (416)
182 3def_A T7I23.11 protein; chlor 99.6 2E-15 6.7E-20 141.6 14.8 134 134-271 31-165 (262)
183 3t34_A Dynamin-related protein 99.6 1.1E-15 3.6E-20 150.1 13.3 167 138-310 33-255 (360)
184 3vqt_A RF-3, peptide chain rel 99.6 9.8E-16 3.3E-20 157.8 13.0 118 137-272 29-167 (548)
185 1nrj_B SR-beta, signal recogni 99.6 1.1E-16 3.7E-21 145.4 5.2 150 136-302 9-170 (218)
186 1h65_A Chloroplast outer envel 99.6 4.5E-15 1.5E-19 139.7 16.4 132 137-272 37-169 (270)
187 1r5b_A Eukaryotic peptide chai 99.6 1.2E-15 4E-20 154.7 11.7 153 137-307 41-243 (467)
188 2qm8_A GTPase/ATPase; G protei 99.6 2E-15 6.8E-20 146.6 12.2 191 133-351 49-296 (337)
189 2dy1_A Elongation factor G; tr 99.6 4.3E-15 1.5E-19 156.7 14.8 116 137-270 7-139 (665)
190 2rdo_7 EF-G, elongation factor 99.6 1.1E-14 3.7E-19 154.4 17.0 118 137-272 8-149 (704)
191 3ec1_A YQEH GTPase; atnos1, at 99.6 1E-16 3.6E-21 157.5 1.0 217 45-303 71-318 (369)
192 2qag_A Septin-2, protein NEDD5 99.6 6.5E-15 2.2E-19 144.3 11.2 170 137-315 35-236 (361)
193 2wsm_A Hydrogenase expression/ 99.6 5.1E-15 1.7E-19 134.6 9.6 153 138-315 29-213 (221)
194 3h2y_A GTPase family protein; 99.6 1.2E-16 4.2E-21 156.9 -1.9 195 62-298 103-312 (368)
195 3j25_A Tetracycline resistance 99.5 5.2E-15 1.8E-19 155.3 7.0 159 139-317 2-240 (638)
196 2ged_A SR-beta, signal recogni 99.5 2.6E-14 8.8E-19 126.9 10.1 120 137-272 46-171 (193)
197 2v3c_C SRP54, signal recogniti 99.5 1E-16 3.5E-21 160.2 -6.9 239 139-404 99-404 (432)
198 1jal_A YCHF protein; nucleotid 99.5 3.6E-14 1.2E-18 137.9 10.9 90 139-234 2-108 (363)
199 2j37_W Signal recognition part 99.5 2.1E-16 7.2E-21 160.2 -5.6 249 137-404 99-412 (504)
200 2qag_C Septin-7; cell cycle, c 99.5 2.5E-14 8.6E-19 142.1 8.9 218 138-402 30-285 (418)
201 2dby_A GTP-binding protein; GD 99.5 4.1E-14 1.4E-18 138.4 9.8 89 140-234 2-111 (368)
202 1yrb_A ATP(GTP)binding protein 99.5 3.1E-14 1E-18 133.0 7.6 172 136-317 11-258 (262)
203 4fn5_A EF-G 1, elongation fact 99.4 6.9E-13 2.4E-17 141.0 15.5 117 137-271 11-151 (709)
204 2qnr_A Septin-2, protein NEDD5 99.4 4.9E-13 1.7E-17 127.7 9.4 169 138-315 17-213 (301)
205 2hf9_A Probable hydrogenase ni 99.4 1.1E-12 3.8E-17 119.5 10.8 154 137-315 36-223 (226)
206 1n0u_A EF-2, elongation factor 99.4 4.6E-13 1.6E-17 144.6 7.3 116 137-270 17-163 (842)
207 2ohf_A Protein OLA1, GTP-bindi 99.3 3.4E-13 1.1E-17 132.4 3.0 194 135-357 18-231 (396)
208 1tq4_A IIGP1, interferon-induc 99.3 5.2E-11 1.8E-15 117.9 15.6 193 137-346 67-289 (413)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1.2E-11 4.1E-16 121.7 10.5 94 136-234 17-127 (392)
210 1cip_A Protein (guanine nucleo 99.2 8.7E-12 3E-16 121.3 7.6 122 182-315 188-343 (353)
211 1t9h_A YLOQ, probable GTPase E 99.2 5.5E-12 1.9E-16 120.1 4.2 121 43-200 84-237 (307)
212 2rcn_A Probable GTPase ENGC; Y 99.1 5.8E-11 2E-15 115.2 5.5 121 43-200 128-281 (358)
213 3ohm_A Guanine nucleotide-bind 99.1 2.6E-10 8.8E-15 109.4 8.6 123 182-316 162-318 (327)
214 2yv5_A YJEQ protein; hydrolase 99.0 1.5E-09 5.3E-14 103.4 9.5 120 43-199 77-228 (302)
215 4fid_A G protein alpha subunit 99.0 2.2E-09 7.5E-14 103.4 10.6 79 181-271 155-242 (340)
216 2qag_B Septin-6, protein NEDD5 98.9 1.7E-09 5.7E-14 107.1 9.6 126 140-272 43-191 (427)
217 3sop_A Neuronal-specific septi 98.9 1.2E-08 4E-13 95.6 11.3 126 140-272 3-155 (270)
218 1f5n_A Interferon-induced guan 98.8 6.4E-09 2.2E-13 107.1 8.8 105 136-248 35-146 (592)
219 1u0l_A Probable GTPase ENGC; p 98.8 3.6E-08 1.2E-12 93.9 11.4 137 154-313 32-170 (301)
220 1zcb_A G alpha I/13; GTP-bindi 98.8 1E-08 3.4E-13 100.0 7.3 122 181-314 195-351 (362)
221 1u0l_A Probable GTPase ENGC; p 98.7 1.8E-08 6.1E-13 96.0 7.4 121 43-200 82-234 (301)
222 2xxa_A Signal recognition part 98.6 5.8E-10 2E-14 111.3 -5.7 239 138-404 99-408 (433)
223 2xtz_A Guanine nucleotide-bind 98.6 4.2E-08 1.4E-12 95.3 7.3 117 186-314 182-343 (354)
224 3dm5_A SRP54, signal recogniti 98.6 3.1E-07 1.1E-11 91.2 13.7 148 138-306 99-281 (443)
225 1azs_C GS-alpha; complex (lyas 98.6 1.2E-07 4.1E-12 93.3 8.9 121 182-314 212-383 (402)
226 1puj_A YLQF, conserved hypothe 98.5 3.3E-07 1.1E-11 86.3 10.8 94 211-315 12-105 (282)
227 2yv5_A YJEQ protein; hydrolase 98.4 3.7E-07 1.3E-11 86.8 8.0 89 219-313 76-166 (302)
228 3kl4_A SRP54, signal recogniti 98.4 1.2E-06 4.3E-11 86.9 10.6 148 138-304 96-278 (433)
229 3ec1_A YQEH GTPase; atnos1, at 98.3 9.2E-07 3.2E-11 86.5 8.3 95 213-315 61-161 (369)
230 3l82_B F-box only protein 4; T 98.2 4.4E-06 1.5E-10 74.1 9.4 97 219-316 122-223 (227)
231 3q5d_A Atlastin-1; G protein, 98.2 9.3E-07 3.2E-11 88.1 5.4 63 137-200 65-153 (447)
232 3h2y_A GTPase family protein; 98.2 2.7E-06 9.4E-11 83.1 8.4 94 213-314 59-158 (368)
233 1j8m_F SRP54, signal recogniti 98.2 9.3E-06 3.2E-10 76.9 11.8 148 139-306 98-281 (297)
234 3szr_A Interferon-induced GTP- 98.2 2.6E-05 9E-10 81.1 15.2 81 186-272 146-229 (608)
235 3cnl_A YLQF, putative uncharac 98.1 1.4E-06 4.9E-11 81.0 4.3 87 213-313 12-98 (262)
236 3e70_C DPA, signal recognition 97.9 6.2E-05 2.1E-09 72.2 10.8 149 137-306 127-310 (328)
237 3l2o_B F-box only protein 4; s 97.8 2.6E-05 8.8E-10 72.5 6.9 95 219-316 207-308 (312)
238 1rj9_A FTSY, signal recognitio 97.8 9.7E-05 3.3E-09 70.0 11.1 24 138-161 101-124 (304)
239 2yhs_A FTSY, cell division pro 97.8 0.00013 4.4E-09 73.2 11.3 153 137-306 291-480 (503)
240 1t9h_A YLOQ, probable GTPase E 97.6 3.2E-05 1.1E-09 73.3 3.8 86 219-310 83-171 (307)
241 1vma_A Cell division protein F 97.4 0.00028 9.6E-09 66.9 8.0 24 138-161 103-126 (306)
242 1zu4_A FTSY; GTPase, signal re 97.4 0.0017 5.9E-08 61.8 12.9 25 137-161 103-127 (320)
243 2px0_A Flagellar biosynthesis 97.3 0.00056 1.9E-08 64.5 8.7 119 138-272 104-254 (296)
244 2og2_A Putative signal recogni 97.3 0.0018 6.1E-08 62.6 11.5 24 138-161 156-179 (359)
245 4dzz_A Plasmid partitioning pr 97.2 0.00027 9.1E-09 62.4 5.2 114 141-270 3-143 (206)
246 2rcn_A Probable GTPase ENGC; Y 97.1 0.0016 5.4E-08 62.9 9.5 85 219-310 127-213 (358)
247 3b9q_A Chloroplast SRP recepto 97.0 0.0027 9.3E-08 59.9 10.3 25 137-161 98-122 (302)
248 2ffh_A Protein (FFH); SRP54, s 97.0 0.003 1E-07 62.5 10.9 24 138-161 97-120 (425)
249 3ney_A 55 kDa erythrocyte memb 96.9 8.9E-05 3E-09 65.6 -1.0 58 137-196 17-75 (197)
250 1ls1_A Signal recognition part 96.9 0.0083 2.8E-07 56.4 11.9 24 138-161 97-120 (295)
251 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0043 1.5E-07 61.5 8.0 24 137-160 65-88 (457)
252 3end_A Light-independent proto 96.5 0.0047 1.6E-07 58.2 7.0 69 186-269 156-225 (307)
253 1ye8_A Protein THEP1, hypothet 96.4 0.0014 4.7E-08 56.9 2.6 22 141-162 2-23 (178)
254 1lvg_A Guanylate kinase, GMP k 96.3 0.0013 4.3E-08 58.1 2.0 24 139-162 4-27 (198)
255 3cwq_A Para family chromosome 96.3 0.0042 1.4E-07 55.2 5.4 110 142-271 3-134 (209)
256 1kgd_A CASK, peripheral plasma 96.3 0.0017 5.9E-08 56.2 2.7 25 138-162 4-28 (180)
257 3k9g_A PF-32 protein; ssgcid, 96.2 0.0044 1.5E-07 57.1 5.0 67 186-270 144-210 (267)
258 1zp6_A Hypothetical protein AT 96.1 0.0031 1.1E-07 54.7 3.7 25 138-162 8-32 (191)
259 3c8u_A Fructokinase; YP_612366 96.1 0.0025 8.6E-08 56.5 2.9 27 136-162 19-45 (208)
260 3tr0_A Guanylate kinase, GMP k 96.1 0.0025 8.4E-08 56.0 2.8 25 138-162 6-30 (205)
261 1znw_A Guanylate kinase, GMP k 96.1 0.0025 8.6E-08 56.4 2.7 26 137-162 18-43 (207)
262 1s96_A Guanylate kinase, GMP k 96.0 0.0028 9.6E-08 56.9 2.7 27 136-162 13-39 (219)
263 3tif_A Uncharacterized ABC tra 96.0 0.0036 1.2E-07 56.8 3.4 27 137-163 29-55 (235)
264 1z6g_A Guanylate kinase; struc 96.0 0.0025 8.5E-08 57.1 2.1 26 137-162 21-46 (218)
265 2pcj_A ABC transporter, lipopr 95.9 0.0038 1.3E-07 56.2 3.3 27 137-163 28-54 (224)
266 3a00_A Guanylate kinase, GMP k 95.9 0.0029 9.8E-08 55.0 2.3 22 141-162 3-24 (186)
267 3tau_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 55.1 3.2 26 138-163 7-32 (208)
268 4gp7_A Metallophosphoesterase; 95.8 0.0046 1.6E-07 53.0 3.3 24 138-161 8-31 (171)
269 3asz_A Uridine kinase; cytidin 95.8 0.0041 1.4E-07 55.0 3.0 25 138-162 5-29 (211)
270 2cbz_A Multidrug resistance-as 95.8 0.0049 1.7E-07 56.0 3.4 27 137-163 29-55 (237)
271 1mv5_A LMRA, multidrug resista 95.8 0.0053 1.8E-07 56.0 3.5 27 137-163 26-52 (243)
272 1b0u_A Histidine permease; ABC 95.8 0.0051 1.8E-07 56.8 3.4 27 137-163 30-56 (262)
273 1htw_A HI0065; nucleotide-bind 95.7 0.005 1.7E-07 52.2 3.0 27 137-163 31-57 (158)
274 1g6h_A High-affinity branched- 95.7 0.0051 1.7E-07 56.6 3.2 27 137-163 31-57 (257)
275 1ex7_A Guanylate kinase; subst 95.7 0.0036 1.2E-07 54.7 2.0 36 142-177 4-40 (186)
276 3gfo_A Cobalt import ATP-bindi 95.7 0.005 1.7E-07 57.3 3.1 27 137-163 32-58 (275)
277 4g1u_C Hemin import ATP-bindin 95.7 0.0051 1.8E-07 56.9 3.2 27 137-163 35-61 (266)
278 2onk_A Molybdate/tungstate ABC 95.7 0.0051 1.8E-07 56.0 3.2 24 140-163 25-48 (240)
279 2oze_A ORF delta'; para, walke 95.7 0.0073 2.5E-07 56.5 4.3 72 186-271 154-226 (298)
280 2pze_A Cystic fibrosis transme 95.7 0.0053 1.8E-07 55.5 3.2 27 137-163 32-58 (229)
281 2j41_A Guanylate kinase; GMP, 95.7 0.0047 1.6E-07 54.2 2.8 26 138-163 5-30 (207)
282 2ff7_A Alpha-hemolysin translo 95.7 0.0053 1.8E-07 56.2 3.2 27 137-163 33-59 (247)
283 2olj_A Amino acid ABC transpor 95.7 0.0059 2E-07 56.4 3.4 26 137-162 48-73 (263)
284 1sgw_A Putative ABC transporte 95.7 0.0047 1.6E-07 55.2 2.6 26 138-163 34-59 (214)
285 2ghi_A Transport protein; mult 95.6 0.0061 2.1E-07 56.2 3.4 26 137-162 44-69 (260)
286 1ji0_A ABC transporter; ATP bi 95.6 0.0058 2E-07 55.6 3.2 27 137-163 30-56 (240)
287 1vpl_A ABC transporter, ATP-bi 95.6 0.0062 2.1E-07 56.0 3.4 27 137-163 39-65 (256)
288 3kjh_A CO dehydrogenase/acetyl 95.6 0.0048 1.6E-07 55.8 2.6 66 184-268 129-194 (254)
289 2qi9_C Vitamin B12 import ATP- 95.6 0.006 2.1E-07 55.9 3.2 27 137-163 24-50 (249)
290 2ixe_A Antigen peptide transpo 95.6 0.0067 2.3E-07 56.3 3.4 27 137-163 43-69 (271)
291 2zu0_C Probable ATP-dependent 95.5 0.0069 2.3E-07 56.1 3.4 26 137-162 44-69 (267)
292 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0065 2.2E-07 55.6 3.2 26 137-162 27-52 (250)
293 2ihy_A ABC transporter, ATP-bi 95.5 0.0067 2.3E-07 56.5 3.2 27 137-163 45-71 (279)
294 3b85_A Phosphate starvation-in 95.5 0.0053 1.8E-07 54.6 2.3 24 139-162 22-45 (208)
295 2yz2_A Putative ABC transporte 95.5 0.0074 2.5E-07 55.8 3.4 27 137-163 31-57 (266)
296 2nq2_C Hypothetical ABC transp 95.5 0.007 2.4E-07 55.5 3.2 27 137-163 29-55 (253)
297 2eyu_A Twitching motility prot 95.5 0.0066 2.2E-07 56.0 3.0 26 137-162 23-48 (261)
298 2v9p_A Replication protein E1; 95.5 0.006 2.1E-07 57.5 2.7 28 135-162 122-149 (305)
299 4eun_A Thermoresistant glucoki 95.4 0.0069 2.4E-07 53.2 2.7 24 138-161 28-51 (200)
300 2bbw_A Adenylate kinase 4, AK4 95.4 0.0085 2.9E-07 54.5 3.3 23 138-160 26-48 (246)
301 3aez_A Pantothenate kinase; tr 95.3 0.0076 2.6E-07 57.1 3.0 27 136-162 87-113 (312)
302 2bbs_A Cystic fibrosis transme 95.3 0.0095 3.2E-07 55.8 3.5 27 137-163 62-88 (290)
303 3lnc_A Guanylate kinase, GMP k 95.2 0.006 2E-07 54.9 1.9 26 137-162 25-51 (231)
304 3uie_A Adenylyl-sulfate kinase 95.2 0.011 3.8E-07 51.8 3.6 26 137-162 23-48 (200)
305 3nh6_A ATP-binding cassette SU 95.2 0.0066 2.2E-07 57.4 2.2 26 137-162 78-103 (306)
306 1knq_A Gluconate kinase; ALFA/ 95.2 0.0092 3.1E-07 51.0 2.9 24 138-161 7-30 (175)
307 2qor_A Guanylate kinase; phosp 95.2 0.0081 2.8E-07 52.9 2.6 25 137-161 10-34 (204)
308 1kag_A SKI, shikimate kinase I 95.2 0.0069 2.4E-07 51.5 2.0 22 140-161 5-26 (173)
309 2pjz_A Hypothetical protein ST 95.2 0.0099 3.4E-07 54.8 3.1 25 139-163 30-54 (263)
310 2bdt_A BH3686; alpha-beta prot 95.1 0.0092 3.1E-07 51.7 2.7 22 140-161 3-24 (189)
311 2qt1_A Nicotinamide riboside k 95.1 0.013 4.3E-07 51.7 3.6 29 134-162 16-44 (207)
312 2jeo_A Uridine-cytidine kinase 95.1 0.01 3.4E-07 54.0 3.0 25 137-161 23-47 (245)
313 2i3b_A HCR-ntpase, human cance 95.1 0.0074 2.5E-07 52.8 1.9 22 141-162 3-24 (189)
314 3la6_A Tyrosine-protein kinase 95.1 0.27 9.3E-06 45.6 12.8 67 187-271 202-268 (286)
315 3tui_C Methionine import ATP-b 95.0 0.012 4.1E-07 56.9 3.4 27 137-163 52-78 (366)
316 3t15_A Ribulose bisphosphate c 95.0 0.03 1E-06 52.4 6.0 24 138-161 35-58 (293)
317 3fvq_A Fe(3+) IONS import ATP- 95.0 0.013 4.5E-07 56.4 3.5 27 137-163 28-54 (359)
318 1odf_A YGR205W, hypothetical 3 95.0 0.026 8.9E-07 52.8 5.4 27 135-161 27-53 (290)
319 4a74_A DNA repair and recombin 95.0 0.012 4E-07 52.5 2.9 27 135-161 21-47 (231)
320 1kht_A Adenylate kinase; phosp 94.9 0.013 4.4E-07 50.5 3.1 23 139-161 3-25 (192)
321 3lw7_A Adenylate kinase relate 94.9 0.013 4.4E-07 49.5 3.0 20 140-159 2-21 (179)
322 2f1r_A Molybdopterin-guanine d 94.8 0.0064 2.2E-07 52.3 0.8 23 140-162 3-25 (171)
323 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.2 7E-06 47.3 11.4 24 138-161 44-67 (322)
324 3cm0_A Adenylate kinase; ATP-b 94.8 0.016 5.3E-07 49.9 3.2 24 138-161 3-26 (186)
325 1ly1_A Polynucleotide kinase; 94.8 0.016 5.5E-07 49.4 3.3 22 140-161 3-24 (181)
326 1sq5_A Pantothenate kinase; P- 94.8 0.014 4.8E-07 55.1 3.1 25 137-161 78-102 (308)
327 2yyz_A Sugar ABC transporter, 94.8 0.015 5.2E-07 56.1 3.4 27 137-163 27-53 (359)
328 3ec2_A DNA replication protein 94.8 0.011 3.8E-07 50.8 2.2 25 138-162 37-61 (180)
329 1z47_A CYSA, putative ABC-tran 94.8 0.015 5E-07 56.1 3.2 27 137-163 39-65 (355)
330 3kb2_A SPBC2 prophage-derived 94.7 0.015 5.2E-07 49.1 3.0 21 141-161 3-23 (173)
331 2it1_A 362AA long hypothetical 94.7 0.016 5.4E-07 56.0 3.4 27 137-163 27-53 (362)
332 2ehv_A Hypothetical protein PH 94.7 0.015 5.2E-07 52.4 3.1 26 136-161 27-52 (251)
333 1cke_A CK, MSSA, protein (cyti 94.7 0.013 4.5E-07 52.2 2.6 23 139-161 5-27 (227)
334 2rhm_A Putative kinase; P-loop 94.7 0.019 6.4E-07 49.6 3.5 24 138-161 4-27 (193)
335 3rlf_A Maltose/maltodextrin im 94.7 0.016 5.5E-07 56.3 3.4 27 137-163 27-53 (381)
336 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.8E-07 51.1 2.7 22 140-161 2-23 (204)
337 2gza_A Type IV secretion syste 94.7 0.014 4.7E-07 56.5 2.8 25 138-162 174-198 (361)
338 1tev_A UMP-CMP kinase; ploop, 94.7 0.018 6.1E-07 49.8 3.3 24 138-161 2-25 (196)
339 3jvv_A Twitching mobility prot 94.7 0.015 5E-07 56.2 3.0 25 138-162 122-146 (356)
340 2plr_A DTMP kinase, probable t 94.7 0.019 6.4E-07 50.4 3.4 24 138-161 3-26 (213)
341 1rz3_A Hypothetical protein rb 94.7 0.017 5.8E-07 50.7 3.1 25 137-161 20-44 (201)
342 1qhx_A CPT, protein (chloramph 94.7 0.018 6.2E-07 49.1 3.2 23 139-161 3-25 (178)
343 1jjv_A Dephospho-COA kinase; P 94.6 0.018 6.2E-07 50.6 3.3 22 140-161 3-24 (206)
344 2vp4_A Deoxynucleoside kinase; 94.6 0.016 5.5E-07 52.1 3.0 26 137-162 18-43 (230)
345 1np6_A Molybdopterin-guanine d 94.6 0.016 5.4E-07 50.0 2.8 24 139-162 6-29 (174)
346 1v43_A Sugar-binding transport 94.6 0.018 6E-07 55.9 3.4 26 137-162 35-60 (372)
347 2qz4_A Paraplegin; AAA+, SPG7, 94.6 0.25 8.4E-06 44.7 11.1 24 138-161 38-61 (262)
348 3vaa_A Shikimate kinase, SK; s 94.6 0.018 6.2E-07 50.4 3.2 24 138-161 24-47 (199)
349 1g29_1 MALK, maltose transport 94.6 0.017 5.9E-07 56.0 3.2 27 137-163 27-53 (372)
350 4e22_A Cytidylate kinase; P-lo 94.5 0.02 6.9E-07 52.3 3.4 24 137-160 25-48 (252)
351 3tqc_A Pantothenate kinase; bi 94.5 0.018 6E-07 54.8 3.0 26 136-161 89-114 (321)
352 2pt7_A CAG-ALFA; ATPase, prote 94.5 0.017 5.7E-07 55.2 2.8 25 138-162 170-194 (330)
353 2ewv_A Twitching motility prot 94.5 0.018 6.1E-07 56.0 3.0 26 137-162 134-159 (372)
354 1lw7_A Transcriptional regulat 94.4 0.013 4.5E-07 56.7 2.0 24 139-162 170-193 (365)
355 1y63_A LMAJ004144AAA protein; 94.4 0.022 7.5E-07 49.2 3.2 25 137-161 8-32 (184)
356 3gd7_A Fusion complex of cysti 94.4 0.022 7.6E-07 55.6 3.5 26 137-162 45-70 (390)
357 3t61_A Gluconokinase; PSI-biol 94.4 0.018 6.2E-07 50.4 2.7 23 139-161 18-40 (202)
358 3tlx_A Adenylate kinase 2; str 94.4 0.034 1.2E-06 50.4 4.6 25 137-161 27-51 (243)
359 1nks_A Adenylate kinase; therm 94.4 0.023 8E-07 48.9 3.3 22 140-161 2-23 (194)
360 3d31_A Sulfate/molybdate ABC t 94.4 0.015 5.1E-07 55.9 2.2 27 137-163 24-50 (348)
361 2v54_A DTMP kinase, thymidylat 94.4 0.023 7.7E-07 49.6 3.2 24 138-161 3-26 (204)
362 2p5t_B PEZT; postsegregational 94.4 0.036 1.2E-06 50.6 4.7 26 136-161 29-54 (253)
363 2kjq_A DNAA-related protein; s 94.3 0.017 5.7E-07 48.4 2.2 25 138-162 35-59 (149)
364 4b4t_L 26S protease subunit RP 94.3 0.59 2E-05 46.1 13.7 26 136-161 212-237 (437)
365 1gvn_B Zeta; postsegregational 94.3 0.047 1.6E-06 50.9 5.4 26 136-161 30-55 (287)
366 2jaq_A Deoxyguanosine kinase; 94.3 0.023 7.7E-07 49.5 3.0 21 141-161 2-22 (205)
367 2wwf_A Thymidilate kinase, put 94.3 0.026 8.8E-07 49.6 3.4 25 137-161 8-32 (212)
368 2c95_A Adenylate kinase 1; tra 94.2 0.027 9.3E-07 48.7 3.4 24 138-161 8-31 (196)
369 1nn5_A Similar to deoxythymidy 94.2 0.028 9.5E-07 49.5 3.4 24 138-161 8-31 (215)
370 2yvu_A Probable adenylyl-sulfa 94.2 0.028 9.7E-07 48.4 3.4 26 136-161 10-35 (186)
371 3fb4_A Adenylate kinase; psych 94.2 0.024 8.2E-07 50.1 3.0 21 141-161 2-22 (216)
372 3te6_A Regulatory protein SIR3 94.1 0.38 1.3E-05 45.4 11.4 25 137-161 43-67 (318)
373 1oxx_K GLCV, glucose, ABC tran 94.1 0.014 4.9E-07 56.2 1.5 27 137-163 29-55 (353)
374 4b4t_J 26S protease regulatory 94.1 0.92 3.1E-05 44.2 14.2 25 137-161 180-204 (405)
375 2pez_A Bifunctional 3'-phospho 94.1 0.03 1E-06 47.9 3.3 24 138-161 4-27 (179)
376 3iij_A Coilin-interacting nucl 94.0 0.024 8.2E-07 48.5 2.7 24 137-160 9-32 (180)
377 1zd8_A GTP:AMP phosphotransfer 94.0 0.028 9.7E-07 50.2 3.2 23 138-160 6-28 (227)
378 2oap_1 GSPE-2, type II secreti 94.0 0.028 9.5E-07 57.0 3.5 25 138-162 259-283 (511)
379 1aky_A Adenylate kinase; ATP:A 94.0 0.028 9.7E-07 49.9 3.2 24 138-161 3-26 (220)
380 3dl0_A Adenylate kinase; phosp 94.0 0.027 9.1E-07 49.8 3.0 21 141-161 2-22 (216)
381 1uf9_A TT1252 protein; P-loop, 94.0 0.033 1.1E-06 48.4 3.6 26 137-162 6-31 (203)
382 1d2n_A N-ethylmaleimide-sensit 94.0 0.65 2.2E-05 42.3 12.6 25 137-161 62-86 (272)
383 2cdn_A Adenylate kinase; phosp 94.0 0.03 1E-06 48.9 3.2 26 136-161 17-42 (201)
384 1p9r_A General secretion pathw 94.0 0.025 8.5E-07 55.8 3.0 25 138-162 166-190 (418)
385 2npi_A Protein CLP1; CLP1-PCF1 93.9 0.04 1.4E-06 55.0 4.3 29 135-163 134-162 (460)
386 3trf_A Shikimate kinase, SK; a 93.9 0.031 1E-06 48.0 3.0 23 139-161 5-27 (185)
387 1xjc_A MOBB protein homolog; s 93.8 0.034 1.2E-06 47.6 3.1 23 139-161 4-26 (169)
388 1zak_A Adenylate kinase; ATP:A 93.8 0.029 1E-06 49.9 2.8 24 138-161 4-27 (222)
389 2vli_A Antibiotic resistance p 93.8 0.024 8.4E-07 48.5 2.2 23 138-160 4-26 (183)
390 3ozx_A RNAse L inhibitor; ATP 93.8 0.033 1.1E-06 56.8 3.5 27 137-163 23-49 (538)
391 2obl_A ESCN; ATPase, hydrolase 93.7 0.029 9.8E-07 53.9 2.8 27 136-162 68-94 (347)
392 1nij_A Hypothetical protein YJ 93.7 0.029 9.9E-07 53.2 2.8 24 139-162 4-27 (318)
393 3kta_A Chromosome segregation 93.7 0.033 1.1E-06 47.7 2.9 21 141-161 28-48 (182)
394 2x8a_A Nuclear valosin-contain 93.7 0.025 8.6E-07 52.4 2.3 20 142-161 47-66 (274)
395 3ug7_A Arsenical pump-driving 93.7 1.8 6.2E-05 41.2 15.5 84 223-312 237-331 (349)
396 3be4_A Adenylate kinase; malar 93.7 0.039 1.3E-06 48.9 3.4 24 138-161 4-27 (217)
397 3b60_A Lipid A export ATP-bind 93.6 0.036 1.2E-06 57.2 3.5 27 137-163 367-393 (582)
398 1gtv_A TMK, thymidylate kinase 93.6 0.021 7.1E-07 50.3 1.5 21 141-161 2-22 (214)
399 1cp2_A CP2, nitrogenase iron p 93.6 0.36 1.2E-05 43.9 10.0 72 186-270 115-187 (269)
400 1ukz_A Uridylate kinase; trans 93.6 0.043 1.5E-06 47.9 3.4 24 138-161 14-37 (203)
401 1yqt_A RNAse L inhibitor; ATP- 93.5 0.037 1.3E-06 56.5 3.3 27 137-163 45-71 (538)
402 1e4v_A Adenylate kinase; trans 93.5 0.04 1.4E-06 48.7 3.2 21 141-161 2-22 (214)
403 2bwj_A Adenylate kinase 5; pho 93.5 0.042 1.4E-06 47.6 3.2 23 139-161 12-34 (199)
404 1vht_A Dephospho-COA kinase; s 93.5 0.043 1.5E-06 48.5 3.4 23 139-161 4-26 (218)
405 1ixz_A ATP-dependent metallopr 93.4 0.031 1.1E-06 50.8 2.3 20 142-161 52-71 (254)
406 2w0m_A SSO2452; RECA, SSPF, un 93.4 0.035 1.2E-06 49.3 2.6 27 136-162 20-46 (235)
407 2yl4_A ATP-binding cassette SU 93.4 0.035 1.2E-06 57.4 3.0 27 137-163 368-394 (595)
408 2pt5_A Shikimate kinase, SK; a 93.4 0.04 1.4E-06 46.4 2.9 21 141-161 2-22 (168)
409 1m7g_A Adenylylsulfate kinase; 93.4 0.065 2.2E-06 47.2 4.3 25 137-161 23-47 (211)
410 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.045 1.5E-06 50.1 3.3 23 139-161 4-26 (260)
411 2z0h_A DTMP kinase, thymidylat 93.3 0.044 1.5E-06 47.4 3.0 21 141-161 2-22 (197)
412 3b5x_A Lipid A export ATP-bind 93.3 0.039 1.3E-06 56.9 3.1 27 137-163 367-393 (582)
413 1qf9_A UMP/CMP kinase, protein 93.3 0.054 1.9E-06 46.5 3.6 23 139-161 6-28 (194)
414 3qf4_B Uncharacterized ABC tra 93.2 0.04 1.4E-06 57.0 3.2 27 137-163 379-405 (598)
415 2pbr_A DTMP kinase, thymidylat 93.2 0.045 1.6E-06 47.1 3.0 21 141-161 2-22 (195)
416 3eie_A Vacuolar protein sortin 93.1 0.21 7.1E-06 47.2 7.7 24 138-161 50-73 (322)
417 4eaq_A DTMP kinase, thymidylat 93.1 0.054 1.8E-06 48.7 3.4 25 137-161 24-48 (229)
418 2dpy_A FLII, flagellum-specifi 93.1 0.042 1.4E-06 54.5 2.9 28 135-162 153-180 (438)
419 3j16_B RLI1P; ribosome recycli 93.1 0.046 1.6E-06 56.5 3.3 27 137-163 101-127 (608)
420 4a82_A Cystic fibrosis transme 93.1 0.035 1.2E-06 57.2 2.4 27 137-163 365-391 (578)
421 1uj2_A Uridine-cytidine kinase 93.1 0.052 1.8E-06 49.4 3.3 24 138-161 21-44 (252)
422 1cr0_A DNA primase/helicase; R 93.1 0.045 1.5E-06 51.0 2.9 28 135-162 31-58 (296)
423 1zcb_A G alpha I/13; GTP-bindi 93.1 0.052 1.8E-06 52.5 3.4 26 135-160 29-54 (362)
424 3b9p_A CG5977-PA, isoform A; A 93.1 0.23 7.7E-06 46.0 7.8 24 138-161 53-76 (297)
425 1via_A Shikimate kinase; struc 93.0 0.04 1.4E-06 46.9 2.4 21 141-161 6-26 (175)
426 1in4_A RUVB, holliday junction 93.0 0.076 2.6E-06 50.5 4.5 23 140-162 52-74 (334)
427 4b4t_H 26S protease regulatory 92.9 1.3 4.5E-05 43.8 13.2 25 137-161 241-265 (467)
428 3r20_A Cytidylate kinase; stru 92.9 0.053 1.8E-06 48.9 3.0 23 138-160 8-30 (233)
429 3euj_A Chromosome partition pr 92.9 0.042 1.4E-06 55.1 2.6 22 140-161 30-51 (483)
430 3bk7_A ABC transporter ATP-bin 92.9 0.052 1.8E-06 56.2 3.3 27 137-163 115-141 (607)
431 3qf4_A ABC transporter, ATP-bi 92.9 0.046 1.6E-06 56.4 2.9 26 137-162 367-392 (587)
432 2xb4_A Adenylate kinase; ATP-b 92.9 0.054 1.8E-06 48.3 3.0 21 141-161 2-22 (223)
433 1jbk_A CLPB protein; beta barr 92.9 0.061 2.1E-06 45.7 3.3 24 139-162 43-66 (195)
434 3sr0_A Adenylate kinase; phosp 92.8 0.055 1.9E-06 47.8 3.0 21 141-161 2-22 (206)
435 3umf_A Adenylate kinase; rossm 92.8 0.064 2.2E-06 47.9 3.3 26 136-161 26-51 (217)
436 1ak2_A Adenylate kinase isoenz 92.8 0.062 2.1E-06 48.2 3.3 24 138-161 15-38 (233)
437 1iy2_A ATP-dependent metallopr 92.7 0.044 1.5E-06 50.6 2.3 20 142-161 76-95 (278)
438 2cvh_A DNA repair and recombin 92.7 0.053 1.8E-06 47.7 2.7 27 135-161 16-42 (220)
439 4b4t_K 26S protease regulatory 92.7 0.31 1.1E-05 48.0 8.5 25 137-161 204-228 (428)
440 2iyv_A Shikimate kinase, SK; t 92.7 0.046 1.6E-06 46.9 2.2 21 141-161 4-24 (184)
441 1f2t_A RAD50 ABC-ATPase; DNA d 92.7 0.058 2E-06 45.0 2.8 21 140-160 24-44 (149)
442 2f6r_A COA synthase, bifunctio 92.7 0.068 2.3E-06 49.6 3.5 23 138-160 74-96 (281)
443 2ze6_A Isopentenyl transferase 92.6 0.055 1.9E-06 49.4 2.8 21 141-161 3-23 (253)
444 1svm_A Large T antigen; AAA+ f 92.5 0.07 2.4E-06 51.8 3.5 26 136-161 166-191 (377)
445 1e6c_A Shikimate kinase; phosp 92.5 0.059 2E-06 45.5 2.7 21 141-161 4-24 (173)
446 3ozx_A RNAse L inhibitor; ATP 92.5 0.061 2.1E-06 54.8 3.2 26 138-163 293-318 (538)
447 3nwj_A ATSK2; P loop, shikimat 92.4 0.055 1.9E-06 49.4 2.5 23 139-161 48-70 (250)
448 1n0w_A DNA repair protein RAD5 92.4 0.056 1.9E-06 48.4 2.6 27 135-161 20-46 (243)
449 3qf7_A RAD50; ABC-ATPase, ATPa 92.4 0.22 7.7E-06 48.0 7.0 20 141-160 25-44 (365)
450 1yqt_A RNAse L inhibitor; ATP- 92.4 0.065 2.2E-06 54.6 3.2 25 139-163 312-336 (538)
451 4b4t_M 26S protease regulatory 92.3 0.26 9E-06 48.6 7.3 26 136-161 212-237 (434)
452 1zuh_A Shikimate kinase; alpha 92.1 0.079 2.7E-06 44.6 2.9 23 139-161 7-29 (168)
453 3bk7_A ABC transporter ATP-bin 92.0 0.074 2.5E-06 55.0 3.2 25 139-163 382-406 (607)
454 1q3t_A Cytidylate kinase; nucl 91.9 0.091 3.1E-06 47.2 3.3 27 135-161 12-38 (236)
455 2xj4_A MIPZ; replication, cell 91.9 0.096 3.3E-06 48.6 3.5 33 187-233 104-136 (286)
456 2grj_A Dephospho-COA kinase; T 91.8 0.099 3.4E-06 45.6 3.3 25 137-161 10-34 (192)
457 2p65_A Hypothetical protein PF 91.8 0.077 2.6E-06 45.0 2.5 23 139-161 43-65 (187)
458 2qmh_A HPR kinase/phosphorylas 91.7 0.14 4.9E-06 44.8 4.2 26 138-163 33-58 (205)
459 2qp9_X Vacuolar protein sortin 91.7 0.27 9.2E-06 47.1 6.5 23 139-161 84-106 (355)
460 3bos_A Putative DNA replicatio 91.6 0.097 3.3E-06 46.4 3.1 24 138-161 51-74 (242)
461 4b4t_I 26S protease regulatory 91.6 2.2 7.6E-05 41.8 12.9 25 137-161 214-238 (437)
462 3cr8_A Sulfate adenylyltranfer 91.5 0.084 2.9E-06 53.9 2.9 27 136-162 366-392 (552)
463 1nlf_A Regulatory protein REPA 91.5 0.085 2.9E-06 48.7 2.7 25 137-161 28-52 (279)
464 3j16_B RLI1P; ribosome recycli 91.5 0.091 3.1E-06 54.3 3.1 24 141-164 380-403 (608)
465 2zan_A Vacuolar protein sortin 91.5 0.63 2.2E-05 46.0 9.2 24 138-161 166-189 (444)
466 1lv7_A FTSH; alpha/beta domain 91.4 0.091 3.1E-06 47.7 2.8 23 139-161 45-67 (257)
467 3n70_A Transport activator; si 91.2 0.18 6E-06 41.5 4.1 24 138-161 23-46 (145)
468 2w58_A DNAI, primosome compone 91.2 0.11 3.9E-06 45.1 3.1 22 140-161 55-76 (202)
469 4f4c_A Multidrug resistance pr 91.2 0.077 2.6E-06 60.0 2.4 26 137-162 1103-1128(1321)
470 2ocp_A DGK, deoxyguanosine kin 91.2 0.13 4.4E-06 46.3 3.5 23 139-161 2-24 (241)
471 3vfd_A Spastin; ATPase, microt 91.2 0.48 1.6E-05 45.9 7.8 24 138-161 147-170 (389)
472 1p5z_B DCK, deoxycytidine kina 91.1 0.09 3.1E-06 48.1 2.4 25 137-161 22-46 (263)
473 1ltq_A Polynucleotide kinase; 91.1 0.12 4E-06 48.1 3.3 22 140-161 3-24 (301)
474 4edh_A DTMP kinase, thymidylat 91.0 0.13 4.6E-06 45.5 3.3 25 137-161 4-28 (213)
475 3tqf_A HPR(Ser) kinase; transf 90.9 0.15 5E-06 43.7 3.3 25 139-163 16-40 (181)
476 3ake_A Cytidylate kinase; CMP 90.9 0.13 4.6E-06 44.6 3.2 21 141-161 4-24 (208)
477 1tue_A Replication protein E1; 90.7 0.11 3.8E-06 45.8 2.4 24 138-161 57-80 (212)
478 1qhl_A Protein (cell division 90.6 0.018 6E-07 51.9 -2.9 22 142-163 30-51 (227)
479 2iw3_A Elongation factor 3A; a 90.6 0.11 3.8E-06 56.4 2.8 26 138-163 460-485 (986)
480 4fcw_A Chaperone protein CLPB; 90.6 0.3 1E-05 45.4 5.6 23 139-161 47-69 (311)
481 2iw3_A Elongation factor 3A; a 90.5 0.074 2.5E-06 57.8 1.4 26 138-163 698-723 (986)
482 4f4c_A Multidrug resistance pr 90.5 0.13 4.6E-06 58.1 3.5 26 137-162 442-467 (1321)
483 3exa_A TRNA delta(2)-isopenten 90.5 0.15 5.3E-06 47.9 3.3 23 139-161 3-25 (322)
484 3qks_A DNA double-strand break 90.4 0.13 4.6E-06 45.1 2.8 21 140-160 24-44 (203)
485 1a7j_A Phosphoribulokinase; tr 90.4 0.092 3.2E-06 49.0 1.7 24 138-161 4-27 (290)
486 1pzn_A RAD51, DNA repair and r 90.3 0.14 4.7E-06 49.2 2.9 27 136-162 128-154 (349)
487 2dr3_A UPF0273 protein PH0284; 90.2 0.16 5.5E-06 45.4 3.2 27 135-161 19-45 (247)
488 3v9p_A DTMP kinase, thymidylat 90.2 0.14 4.6E-06 46.0 2.7 25 137-161 23-47 (227)
489 1ko7_A HPR kinase/phosphatase; 90.1 0.2 6.8E-06 47.2 3.8 25 139-163 144-168 (314)
490 3h4m_A Proteasome-activating n 90.1 0.3 1E-05 44.9 5.0 25 137-161 49-73 (285)
491 3co5_A Putative two-component 90.1 0.21 7E-06 41.0 3.5 23 139-161 27-49 (143)
492 3lv8_A DTMP kinase, thymidylat 90.1 0.18 6.1E-06 45.5 3.3 27 135-161 23-49 (236)
493 2h92_A Cytidylate kinase; ross 90.0 0.13 4.6E-06 45.2 2.5 23 139-161 3-25 (219)
494 4tmk_A Protein (thymidylate ki 89.9 0.19 6.3E-06 44.6 3.3 24 138-161 2-25 (213)
495 3cf0_A Transitional endoplasmi 89.8 0.48 1.6E-05 44.1 6.3 25 137-161 47-71 (301)
496 2chg_A Replication factor C sm 89.8 0.16 5.6E-06 44.1 2.8 21 141-161 40-60 (226)
497 4aby_A DNA repair protein RECN 89.7 0.069 2.4E-06 52.3 0.3 22 138-160 60-81 (415)
498 1njg_A DNA polymerase III subu 89.7 0.16 5.5E-06 44.7 2.8 22 140-161 46-67 (250)
499 3g5u_A MCG1178, multidrug resi 89.7 0.15 5.2E-06 57.5 3.1 26 137-162 414-439 (1284)
500 3gmt_A Adenylate kinase; ssgci 89.6 0.18 6.3E-06 45.2 3.0 24 138-161 7-30 (230)
No 1
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=100.00 E-value=3.2e-52 Score=402.08 Aligned_cols=284 Identities=26% Similarity=0.380 Sum_probs=242.8
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
+..+....|+++|.||||||||+|+|++.+++.++..+++|+....+....+ +.++.||||||+..+... ......+
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~--~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS--DVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT--CHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc--hhHHHHH
Confidence 3456788999999999999999999999999888999999999988888888 899999999999865411 1222344
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC-CCCe
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP-GYER 291 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~ 291 (424)
...+...+..+|++++|+|++++.+..+..+ |+..+.. .+.|+++|+||+|+...........+.+.... .+.+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~--~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEI--YQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHH--HHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHH--HHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence 5566667889999999999987655544433 2333332 14789999999999844456666677777665 4567
Q ss_pred EEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEecc--CCe
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLR--DGS 369 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~--~~~ 369 (424)
++++||++|.|+++|+++|.+.++++++.|++...++.+.++++.|++||++++.+.+|+||++++.+++|++.. ++.
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~~~~ 237 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDANPNM 237 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCCCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999865 468
Q ss_pred EEEEEEEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 370 LRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 370 ~~i~~~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
++|.+.|+|+|+|||+||||++|++||+||++||++|+++|+++|||+|||||++
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~l~vkv~~ 292 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLELWVKVVP 292 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEEEEEEECT
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999986
No 2
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=100.00 E-value=5.4e-51 Score=391.66 Aligned_cols=277 Identities=25% Similarity=0.372 Sum_probs=235.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.||||||||+|+|++.+++.+++.++||++...+.+..++.++.+|||||+..+.. .....+...+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~----~l~~~~~~~~ 80 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD----ALGEFMDQEV 80 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS----HHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh----HHHHHHHHHH
Confidence 456789999999999999999999999988889999999888888888889999999999986532 1112345556
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|++++.+..+..+.+.+.... ++.|+++|+||+|+......+.+..+.+ .++.+++++|
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~----~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iS 153 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV----GKVPILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLS 153 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT----TTSCEEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECC
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc----CCCCEEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEe
Confidence 67788999999999998776555444444444431 2479999999999986533134444444 4566799999
Q ss_pred cCCCcChHHHHHHHHHhccCCCCCCCCCCc-chhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEEE
Q 014461 297 GLKGAGLKALTQYLMEQAVQRPWSEDPLTM-SEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQH 375 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~~ 375 (424)
|++|.|++++++.|.+.++++++.|++... ++.+.+++.+|++|+++++.+.+|+||++.+.++.|++.+++.++|.+.
T Consensus 154 A~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~~~~~~~~~i~~~ 233 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAI 233 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEEecCCCeEEEEEE
Confidence 999999999999999999999988888888 8888888899999999999999999999999999999866788999999
Q ss_pred EEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 376 LITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 376 i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
|+|||+|||+||||++|++||+||++||++|+++|+++|||+|||||++
T Consensus 234 i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~l~vkv~~ 282 (301)
T 1wf3_A 234 LYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLDLEVKVYP 282 (301)
T ss_dssp EEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEEEEEEECT
T ss_pred EEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999986
No 3
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=100.00 E-value=7.8e-48 Score=370.13 Aligned_cols=276 Identities=27% Similarity=0.452 Sum_probs=236.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcc-cCCCCCChhhh-hhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDV-KVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~-~~~~~~~~~~~-~~~~~ 214 (424)
.++.+|+++|+||||||||+|+|++.+++.++..+++|++...+.+..++.++.+|||||+. .+. ..+ ..+..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~-----~~l~~~~~~ 80 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK-----RAINRLMNK 80 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHH-----HHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccch-----hhHHHHHHH
Confidence 35678999999999999999999999988888899999988888888888999999999986 321 111 11122
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+...+..+|++++|+|+++ ++..+..+.+.+.. .+.|+++|+||+|+......+.+....+.+..++..+++
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~------~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE------GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS------SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh------cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEE
Confidence 23456788999999999976 55554444444432 247899999999998744566677777877777767999
Q ss_pred EecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceEEEEEEEEeccCCeEEEEE
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQ 374 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~~~~~~~~~~~~~~~~i~~ 374 (424)
+||++|.|+++|++.|.+.++++++.|++...++.+.+++.+|++|+++++.+.+|+||++++.+++|.+..++.++|.+
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~~~~~~~~~i~~ 233 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFVSNERGGYDING 233 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEEecCCCeEEEEE
Confidence 99999999999999999999999998988888999988889999999999999999999999999999876678899999
Q ss_pred EEEeeCCCcccEEeccCCchHHHHHHHHHHHHHHhcCCceEEEEEEEEeC
Q 014461 375 HLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLKT 424 (424)
Q Consensus 375 ~i~~~~~s~k~ivig~~g~~i~~i~~~~~~~l~~~~~~~v~l~l~vkv~~ 424 (424)
.|+|+++|||+||||++|++||+||.+||.+|+++|+++|+|+|||||++
T Consensus 234 ~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l~l~vkv~~ 283 (301)
T 1ega_A 234 LILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLELWVKVKS 283 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEEEEEEEETT
T ss_pred EEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999985
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=1.3e-22 Score=185.29 Aligned_cols=175 Identities=20% Similarity=0.217 Sum_probs=123.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEe-cCCccEEEEeCCCcccCCCCCCh-hhhhhHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSH-KDVKVRV 213 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~-~~~~~~~ 213 (424)
...++|+++|.+|||||||+|+|++.. ...++..+++|......... ..+..+.+|||||+......... .......
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 346899999999999999999999987 56678888888876555554 56788999999998654221111 1122334
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcC----
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHL---- 286 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~---- 286 (424)
...+.....+|++++|+|++++.+..+..+..++... +.|+++|+||+|+..... ......+.+...
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT------GKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG------CCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 4555556668999999999876665555555555542 478999999999987432 122222333332
Q ss_pred -CCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 287 -PGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 287 -~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
....+++++||++|.|+++++++|.+.++..
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 2344699999999999999999999988643
No 5
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.89 E-value=6.2e-23 Score=180.35 Aligned_cols=164 Identities=21% Similarity=0.275 Sum_probs=118.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...+|+++|.+|||||||+|+|.+.....++..+++|++.....+..++..+.+|||||+..... ......+..++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 78 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD----EVERIGIERAW 78 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS----HHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh----HHHHHHHHHHH
Confidence 46789999999999999999999987666778888888777777777788899999999865321 11112344556
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
..+..+|++++|+|+++..+.....+...+.... ..+.|+++|+||+|+...... +.... ..+++++||
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~NK~Dl~~~~~~-------~~~~~-~~~~~~~SA 147 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARL---PAKLPITVVRNKADITGETLG-------MSEVN-GHALIRLSA 147 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCCE-------EEEET-TEEEEECCT
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhc---ccCCCEEEEEECccCCcchhh-------hhhcc-CCceEEEeC
Confidence 6778899999999998766554444444444332 235899999999998543111 11112 235899999
Q ss_pred CCCcChHHHHHHHHHhccC
Q 014461 298 LKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~ 316 (424)
++|.|+++++++|.+.+..
T Consensus 148 ~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 148 RTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTCTTHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHhhh
Confidence 9999999999999988743
No 6
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=5.2e-22 Score=201.05 Aligned_cols=166 Identities=20% Similarity=0.255 Sum_probs=100.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+++|+++|.||||||||+|+|++.....+++.++||++.....+..++.++.+|||||+..+.... ...++..+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~v----e~~gi~~~ 306 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEI----EHEGIRRS 306 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-----------------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHH----HHHHHHHH
Confidence 35688999999999999999999998877789999999998877788889999999999997542111 12335667
Q ss_pred HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
+..+..+|++++|+|++++.+.... ....++..+. +.|+++|+||+|+........ +.+... ++.+++++
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-----~~piIvV~NK~Dl~~~~~~~~---~~l~~~-~~~~~i~v 377 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP-----AAKFLTVANKLDRAANADALI---RAIADG-TGTEVIGI 377 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-----TSEEEEEEECTTSCTTTHHHH---HHHHHH-HTSCEEEC
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-----CCCEEEEEECcCCCCccchhH---HHHHhc-CCCceEEE
Confidence 7788999999999999876544221 3445555543 479999999999987533211 223322 12459999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++|+++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999886
No 7
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=1.3e-22 Score=175.12 Aligned_cols=160 Identities=26% Similarity=0.277 Sum_probs=111.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
++|+++|.+|+|||||+|+|.+.........+++|.......+...+..+.+|||||...... . ...........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~----~~~~~~~~~~~ 76 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK-W----EKKIQEKVDRA 76 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS-C----CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc-h----HHHHHHHHHHH
Confidence 589999999999999999999887665677777777766666777788999999999875431 1 11112233345
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|++++|+|+++..+.....+..++... +.|+++|+||+|+...... ...+. ..++.+++++||++
T Consensus 77 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~p~ilv~nK~Dl~~~~~~----~~~~~-~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 77 LEDAEVVLFAVDGRAELTQADYEVAEYLRRK------GKPVILVATKVDDPKHELY----LGPLY-GLGFGDPIPTSSEH 145 (161)
T ss_dssp TTTCSEEEEEEESSSCCCHHHHHHHHHHHHH------TCCEEEEEECCCSGGGGGG----CGGGG-GGSSCSCEECBTTT
T ss_pred HHhCCEEEEEEECCCcccHhHHHHHHHHHhc------CCCEEEEEECcccccchHh----HHHHH-hCCCCCeEEEeccc
Confidence 7889999999999876665555566666652 4789999999999764222 22333 23554589999999
Q ss_pred CcChHHHHHHHHHhcc
Q 014461 300 GAGLKALTQYLMEQAV 315 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~ 315 (424)
|.|+++++++|.+.++
T Consensus 146 ~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 146 ARGLEELLEAIWERLP 161 (161)
T ss_dssp TBSHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHhCc
Confidence 9999999999998763
No 8
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=6.5e-23 Score=207.80 Aligned_cols=173 Identities=26% Similarity=0.370 Sum_probs=123.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
....+|+++|.+|+|||||+|+|++.....+++.+++|++.....+..++..+.+|||||+........ .........+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC-CCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch-HHHHHHHHHH
Confidence 457899999999999999999999988777899999998876666777888999999999864321111 0112234445
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhc---CCCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKH---LPGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~---~~~~~~~ 292 (424)
+..+..+|++++|+|++++....+..+..++.+. +.|+++|+||+|+...+. ...+..+.+.. ..+..++
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~------~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc------CCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 5567889999999999987777666666666653 478999999999986432 22222222222 2234569
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 9
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=5.8e-23 Score=207.01 Aligned_cols=172 Identities=27% Similarity=0.391 Sum_probs=118.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
....+|+++|.+|||||||+|+|++.....+++.+++|++.....+..++..+.+|||||+........ ........++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC-CCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc-hHHHHHHHHH
Confidence 356899999999999999999999998887899999999887777777888999999999865432110 0011223344
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh-HHHHHH----HHhcCCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD-LLKVAE----QFKHLPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~----~~~~~~~~~~ 291 (424)
...+..+|++++|+|++++.+..+..+...+.+. +.|+++|+||+|+.+.... ..+..+ .+... ...+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~------~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~-~~~~ 324 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA------GKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFL-DYAP 324 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGG-TTSC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc------CCcEEEEEECccCCCcchHHHHHHHHHHHHhcccC-CCCC
Confidence 5567889999999999987766555554444432 4789999999999864332 222222 22222 2345
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++++||++|.|++++++.+.+.+..
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987754
No 10
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.88 E-value=1.6e-21 Score=173.59 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=120.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~~ 215 (424)
...++|+++|.+|||||||+|+|++.......+.+++|...... ..+.++.+|||||+........ ..........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~---~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFY---LVNSKYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEE---EETTTEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEE---EECCcEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 34679999999999999999999998877677777777665433 2356789999999754321100 0112223344
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh--hhHHHHHHHHhcCCCCCeEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK--KDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 293 (424)
.+.....+|++++|+|++.........+..++... +.|+++|+||+|+.... ....+....+....+..+++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTII 171 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEE
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceE
Confidence 44555667999999999876655555666777665 37899999999997642 22233344444444444699
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|+++++++|.+.+.
T Consensus 172 ~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 172 PTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHC
T ss_pred EEecCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999998874
No 11
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.9e-22 Score=180.23 Aligned_cols=168 Identities=18% Similarity=0.168 Sum_probs=113.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcce-eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA-AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~-~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
..+.++|+++|.+|||||||+|+|++..+. ......+++.......+......+.+|||||...+.. ..
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~- 89 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHS---------LA- 89 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG---------GT-
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh---------hh-
Confidence 345789999999999999999999987653 2344445444433333333456799999999754321 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 90 --~~~~~~~d~iilV~d~~~~~--s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 164 (192)
T 2fg5_A 90 --PMYYRGSAAAVIVYDITKQD--SFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA-IVVE 164 (192)
T ss_dssp --HHHHTTCSEEEEEEETTCTH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC-EEEE
T ss_pred --HHhhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 12356789999999997532 223344555554433334589999999999975323233445555555565 4999
Q ss_pred EecCCCcChHHHHHHHHHhccCCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
+||++|.|+++++++|.+.+...+
T Consensus 165 ~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 165 TSAKNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHTCC---
T ss_pred EeCCCCcCHHHHHHHHHHHHHhhC
Confidence 999999999999999999886544
No 12
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.88 E-value=6.3e-23 Score=194.08 Aligned_cols=169 Identities=18% Similarity=0.308 Sum_probs=121.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+.++|+++|.+|||||||+|+|++... .+++.+++|.+...+.+...+..+.+|||||+...............+.+.+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 468999999999999999999999874 6889999999888888888888999999999986542111111223344444
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.....+|++++|+|+++ ......+..++.+. +.|+++|+||+|+..... .....+.+.+..+. +++++||
T Consensus 81 ~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~-~~~~~~~l~~~lg~-~~i~~SA 150 (274)
T 3i8s_A 81 ILSGDADLLINVVDASN--LERNLYLTLQLLEL------GIPCIVALNMLDIAEKQN-IRIEIDALSARLGC-PVIPLVS 150 (274)
T ss_dssp HHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTT-EEECHHHHHHHHTS-CEEECCC
T ss_pred HhhcCCCEEEEEecCCC--hHHHHHHHHHHHhc------CCCEEEEEECccchhhhh-HHHHHHHHHHhcCC-CEEEEEc
Confidence 44578999999999975 12222344445444 378999999999864321 10112223333344 4999999
Q ss_pred CCCcChHHHHHHHHHhccCC
Q 014461 298 LKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~~ 317 (424)
++|.|+++|+++|.+.++..
T Consensus 151 ~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGGHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999988654
No 13
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=1.9e-22 Score=203.34 Aligned_cols=249 Identities=21% Similarity=0.234 Sum_probs=150.7
Q ss_pred CCcEEEEeCCCCc------------------cCCC-CCCCCCCCccChhhHHHHHHhcCC-eEEEeec-cccccchhhhH
Q 014461 45 DCDSVFDSSYFRI------------------PTID-DPQNNNAAKKQEPTWDEKYRERTD-RIVFGEE-AQKGKLRIFQE 103 (424)
Q Consensus 45 ~~d~vie~~dar~------------------p~~~-~~k~Dl~~~~~~~~~~~~~~~~~~-~i~f~~~-~~~~~~~l~~~ 103 (424)
.+|+++-+-|++. |++. .||+|+........+..++ ..+. .++.+|+ ++.|...+...
T Consensus 81 ~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~ 159 (439)
T 1mky_A 81 EADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLET 159 (439)
T ss_dssp TCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHH
Confidence 5787777777654 3333 5577875321112222333 4443 4677777 88887766211
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe
Q 014461 104 EEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT 183 (424)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~ 183 (424)
+.+. +....... .........++|+++|+||||||||+|+|++.....+++.+++|++...+.+.
T Consensus 160 -------------i~~~-l~~~~~~~-~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~ 224 (439)
T 1mky_A 160 -------------IIKK-LEEKGLDL-ESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVF 224 (439)
T ss_dssp -------------HHHH-HHHTTCCS-SSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEE
T ss_pred -------------HHHh-cccccccc-hhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEE
Confidence 1111 11000000 00001234689999999999999999999999888889999999988777788
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
.++..+.+|||||+..................+...+..+|++++|+|++.+.+..+..+...+... +.|+++|
T Consensus 225 ~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~------~~~~ilv 298 (439)
T 1mky_A 225 IDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR------GRASVVV 298 (439)
T ss_dssp ETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCEEEEE
T ss_pred ECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEE
Confidence 8888999999999854321100000001112334556778999999999876665555555555543 4789999
Q ss_pred EecCCCCCChhh-HHHHH----HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 264 MNKVDLVTKKKD-LLKVA----EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 264 ~NK~Dl~~~~~~-~~~~~----~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||+|+...... ..+.. +.+... ...+++++||++|.|+++|++.+.+.+..
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 299 FNKWDLVVHREKRYDEFTKLFREKLYFI-DYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EECGGGSTTGGGCHHHHHHHHHHHCGGG-TTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EECccCCCchhhHHHHHHHHHHHHhccC-CCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999864321 22222 222222 33469999999999999999999987754
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.87 E-value=3.3e-21 Score=172.02 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++.. .......+++|........ +.++.+|||||+........ .........
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE---TTTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 357899999999999999999999886 4455666777766543322 44799999999764421100 011122233
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH---HHHHHHHhcCCCCCe
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGYER 291 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~---~~~~~~~~~~~~~~~ 291 (424)
..+.....+|++++|+|++++.+..+..+..++... +.|+++|+||+|+....... .+..+.+... ...+
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 170 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY------GIPVIVIATKADKIPKGKWDKHAKVVRQTLNID-PEDE 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCC-TTSE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEECcccCChHHHHHHHHHHHHHHccc-CCCc
Confidence 333444556999999999876665555556666552 47899999999998753211 1222224322 3346
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++++||++|.|+++++++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999988763
No 15
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=9e-23 Score=191.40 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=128.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCC-ceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTN-TTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~-tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
..+.++|+++|.+|||||||+|+|++......+..+. +|+......+...+.++.+|||||+..+..... ........
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~-~~~~~i~~ 97 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCE-ALYKEVQR 97 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCH-HHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHH-HHHHHHHH
Confidence 3457899999999999999999999987655555555 677777777778889999999999986543211 11122244
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe-cCCCCCChhhHHH------------HHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN-KVDLVTKKKDLLK------------VAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N-K~Dl~~~~~~~~~------------~~~ 281 (424)
..+..+..+|++++|+|+++ +...+..+..++.+...... ..|.++|+| |+|+.... ... ...
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~-~~~~i~vv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~ 173 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDA-MGHTIVLFTHKEDLNGGS--LMDYMHDSDNKALSKLVA 173 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGG-GGGEEEEEECGGGGTTCC--HHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchh-hccEEEEEEcccccCCcc--HHHHHHhcchHHHHHHHH
Confidence 44556788999999999974 45444556666766532111 246677776 99998532 222 333
Q ss_pred HHhcCCC-CCeEEEEecCCCcChHHHHHHHHHhccCCC-CCCCCCCcchhhH
Q 014461 282 QFKHLPG-YERIFMTSGLKGAGLKALTQYLMEQAVQRP-WSEDPLTMSEEVM 331 (424)
Q Consensus 282 ~~~~~~~-~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~-~~~~~~~~~~~~~ 331 (424)
.+..... +.+ +++||++|.|+++++++|.+.+...+ +.|+...+++.+.
T Consensus 174 ~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (260)
T 2xtp_A 174 ACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQR 224 (260)
T ss_dssp HTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC--
T ss_pred HhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 3332221 332 78999999999999999999998766 5666555544443
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=173.92 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=101.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
..++|+++|.+|||||||+|+|.+..+......++++.......+......+.+|||||..... + ..+. .
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~----~~~~--~ 72 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLD----K----SWSQ--E 72 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHH--H
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccc----h----hhhH--H
Confidence 4689999999999999999999998877666666655433322222223468899999976421 0 1111 1
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|+++.. ....+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++++|
T Consensus 73 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRG--SFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC-KFIETS 149 (175)
T ss_dssp HTTTSCSEEEEEEETTCHH--HHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS-EEEECB
T ss_pred hhcccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC-eEEEEe
Confidence 3456789999999997532 222333444433321 123589999999999976433222333344433344 599999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++++++|.+.+.
T Consensus 150 a~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 150 ATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988763
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=6.8e-22 Score=173.90 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=108.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+......+.++.......+..++ ..+.+|||||...+..
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------ 75 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS------------ 75 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH------------
Confidence 45789999999999999999999987764333334333333333334444 4789999999754321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKAS--FDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL-PFME 152 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC-CEEE
T ss_pred HHHHHccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEE
Confidence 12245678899999999975321 22233444443332224589999999999986433223333444443455 4999
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|+++++++|.+.+..
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 153 TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988753
No 18
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.87 E-value=3.3e-22 Score=173.99 Aligned_cols=163 Identities=16% Similarity=0.180 Sum_probs=109.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
+.++|+++|.+|||||||+|+|++..+.. ..+..+++.......+......+.+|||||...+.. ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~--- 72 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA---------LA--- 72 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------GT---
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhc---------cc---
Confidence 46899999999999999999999876532 233334343333322333346789999999854321 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++.. ....+..|+..+.....+..|+++|+||+|+...++...+....+....+. +++++|
T Consensus 73 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~S 149 (170)
T 1z0j_A 73 PMYYRGSAAAIIVYDITKEE--TFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA-IFVETS 149 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECB
T ss_pred HhhCcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC-EEEEEe
Confidence 12356789999999997532 222334444444333345689999999999976433333444555544454 599999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++++++|.+.+.
T Consensus 150 a~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 150 AKNAININELFIEISRRIP 168 (170)
T ss_dssp TTTTBSHHHHHHHHHHHCC
T ss_pred CCCCcCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 19
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=3.7e-22 Score=173.52 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=108.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
.+.++|+++|.+|||||||+|+|++..+.... ...+++.......+...+..+.+|||||..... ...
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~-- 72 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---------SLA-- 72 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GGH--
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---------hhh--
Confidence 35689999999999999999999987654322 222333322222233335678999999975431 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++++|+|+++.. ....+..|+..+.....++.|+++|+||+|+...+....+....+....+. +++++
T Consensus 73 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (170)
T 1r2q_A 73 -PMYYRGAQAAIVVYDITNEE--SFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL-LFMET 148 (170)
T ss_dssp -HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred -HHhccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC-eEEEE
Confidence 23456789999999997532 223344555544433334689999999999965322222233344444454 49999
Q ss_pred ecCCCcChHHHHHHHHHhccC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~ 316 (424)
||++|.|+++++++|.+.+.+
T Consensus 149 Sa~~g~gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 149 SAKTSMNVNEIFMAIAKKLPK 169 (170)
T ss_dssp CTTTCTTHHHHHHHHHHTSCC
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 20
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.87 E-value=4.3e-25 Score=227.75 Aligned_cols=235 Identities=19% Similarity=0.257 Sum_probs=149.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce--eecCCCCceeeEEEEE---------------------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA--AVSRKTNTTTHEVLGV--------------------------------- 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~--~~~~~~~tt~~~~~~~--------------------------------- 181 (424)
....+|+|+|.+|+|||||+|+|++.++. .++..++|++......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998875 4677777654321110
Q ss_pred ---EecCC---ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCC
Q 014461 182 ---MTKAD---TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQA 254 (424)
Q Consensus 182 ---~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~ 254 (424)
+...+ .++.||||||+............ .....+...+..+|++++|+|+++. ....+ ..++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~-~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~---~~~l~~l~~~- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGY-DFPAVLRWFAERVDLIILLFDAHKLEISDEF---SEAIGALRGH- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCS-CHHHHHHHHHHHCSEEEEEEETTSCCCCHHH---HHHHHHTTTC-
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHh-hHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH---HHHHHHHHhc-
Confidence 00000 36899999999753210000000 0122333456778999999999752 33222 3344444321
Q ss_pred CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHH
Q 014461 255 PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNI 334 (424)
Q Consensus 255 ~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 334 (424)
+.|+++|+||+|+... ..+......+. ..+..++++|. +.+ ++.+++.+++... +...+++
T Consensus 218 --~~pvilVlNK~Dl~~~-~el~~~~~~l~--~s~~~i~~vs~--------l~~-----~~~~~~~~~~~~~-~~~~~~~ 278 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVET-QQLMRVYGALM--WALGKVVGTPE--------VLR-----VYIGSFWSQPLLV-PDNRRLF 278 (550)
T ss_dssp --GGGEEEEEECGGGSCH-HHHHHHHHHHH--HHHHHHHCCSS--------CCC-----EEESCCSSSCCSS-CTTHHHH
T ss_pred --CCCEEEEEECCCccCH-HHHHHHHHHhh--cchhheeechH--------hhh-----hccccCCCCcccC-CCCHHHH
Confidence 3689999999999864 34444444443 01112333332 221 1334555555544 6677778
Q ss_pred HHHHHHHHHHhhcCccCCcceEEE-EEEEEeccCCeEEEEEEEEeeCCCcccEEeccCCchHHHHH
Q 014461 335 SLEVVRERLLDHVHQEIPYSIEHR-LIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIG 399 (424)
Q Consensus 335 ~~e~ire~l~~~l~~eip~~~~~~-~~~~~~~~~~~~~i~~~i~~~~~s~k~ivig~~g~~i~~i~ 399 (424)
.+|+ |+++..+ +|+||+..++ ++++.+. ++.++|.+.|+|+++|||+|+||++|++.+-+.
T Consensus 279 ~~E~--e~l~~~l-~elP~~~~v~~i~~~~~~-~~~~~I~a~I~v~~~sqk~i~iGk~g~~~~li~ 340 (550)
T 2qpt_A 279 ELEE--QDLFRDI-QGLPRHAALRKLNDLVKR-ARLVRVHAYIISYLKKEMPTVFGKENKKKQLIL 340 (550)
T ss_dssp HHHH--HHHHHHH-HTTGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred HHHH--HHHHHHh-hhccHHHHHHHHHHHhcc-CCeEEEEEEEEEeecccceeEECCchHHHHHHH
Confidence 8787 8898886 8999998876 4444432 356789999999999999999999998776554
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.87 E-value=6.5e-22 Score=171.67 Aligned_cols=161 Identities=16% Similarity=0.168 Sum_probs=98.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.++|+++|.+|||||||+|+|.+.........++++..... .+......+.+|||||...+... ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~------------~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDGGRWL------------PGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCccchhh------------hhh
Confidence 47899999999999999999998877666666666664322 23334456889999997654211 112
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+...+.........+....+. +++++||
T Consensus 69 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 145 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKG--SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC-KFIETSA 145 (166)
T ss_dssp ----CCEEEEEEETTCHH--HHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC-EEEECBG
T ss_pred hhhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC-cEEEecc
Confidence 356789999999997532 223344444444322 224589999999999986544334444555555555 5999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|+++++++|.+.+.
T Consensus 146 ~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 146 ALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp GGTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999988763
No 22
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.87 E-value=2e-22 Score=183.73 Aligned_cols=165 Identities=17% Similarity=0.188 Sum_probs=109.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.+||+++|.+|||||||+++++...+.... .+....+........+ ...+.+|||+|...+.. + ..
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~-~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~------l---~~ 80 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTY-QATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS------L---IP 80 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-----------CEEEEEECSSCEEEEEEECCSCTTTCGG------G---HH
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCc-CCccceEEEEEEEEecceEEEEEEEECCCchhhhh------H---HH
Confidence 45689999999999999999999977664211 1111112222223333 34678999999875421 1 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..++.+|++++|+|.++. .....+..|+..+.....++.|+++|+||+|+...+....+..+.+....+.. +++
T Consensus 81 ---~~~~~a~~~ilv~di~~~--~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e 154 (216)
T 4dkx_A 81 ---SYIRDSAAAVVVYDITNV--NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIE 154 (216)
T ss_dssp ---HHHTTCSEEEEEEETTCH--HHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEE
T ss_pred ---HHhccccEEEEEeecchh--HHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEE
Confidence 246788999999999753 22334455555544433456899999999999765444445556666666664 999
Q ss_pred EecCCCcChHHHHHHHHHhccCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
|||++|.||+++|+.|.+.+...
T Consensus 155 ~SAktg~nV~e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 155 TSAKAGYNVKQLFRRVAAALPGM 177 (216)
T ss_dssp EBTTTTBSHHHHHHHHHHHC---
T ss_pred EeCCCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999988543
No 23
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=3.1e-21 Score=177.28 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=115.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|++..+. +...+++|.......+...+..+.+|||||+....... .. .......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~--~~-~~~~~~~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN--RN-TIEMTTI 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGG--CC-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccch--hh-hHHHHHH
Confidence 56799999999999999999999998876 56677777777666666677899999999986421100 00 0001111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCC-CCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG-YERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~-~~~~ 292 (424)
......+|++++|+|+++..+........++..+... .++.|+++|+||+|+...+. ........+....+ ..++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 1225677999999999876554433344555554432 12589999999999976432 12223444444333 2469
Q ss_pred EEEecCCCcChHHHHHHHHHhcc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++|||++|.|+++++++|.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999999998874
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=171.59 Aligned_cols=162 Identities=20% Similarity=0.185 Sum_probs=110.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+. ....+..+.......+...+ ..+.+|||||........
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 75 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTIT---------- 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhH----------
Confidence 45789999999999999999999988765 33344444444444455555 578999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|++++ .....+..|+..+.... ++.|+++|+||+|+...+.........+....+. ++++
T Consensus 76 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (181)
T 3tw8_B 76 --STYYRGTHGVIVVYDVTSA--ESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI-QLFE 149 (181)
T ss_dssp --GGGGTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-CEEE
T ss_pred --HHHhccCCEEEEEEECCCH--HHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC-eEEE
Confidence 1245778999999999763 22334445555544322 3589999999999875432222333444444455 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 150 ~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 150 TSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=175.09 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=114.0
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
.....++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||...... .
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~ 81 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT---------I 81 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT---------T
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh---------h
Confidence 33457899999999999999999999876642 2333444444334444444 5689999999764321 1
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
. ...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.........+....+.. +
T Consensus 82 ~---~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~ 155 (196)
T 3tkl_A 82 T---SSYYRGAHGIIVVYDVTDQE--SFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-F 155 (196)
T ss_dssp H---HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-E
T ss_pred H---HHHHhhCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-E
Confidence 1 12456789999999997532 2223344544443333346899999999999765433334455555555654 9
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 26
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=1.7e-22 Score=193.27 Aligned_cols=211 Identities=19% Similarity=0.224 Sum_probs=131.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce-----eecCCCC----------------------ceeeE------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTHE------------ 177 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~~~~~~----------------------tt~~~------------ 177 (424)
...++|+++|.+|||||||+|+|++..+. .++..|+ +|.+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 35679999999999999999999998764 2333343 22210
Q ss_pred ------------EEEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEE-EEEeCCCCCCCchHHH
Q 014461 178 ------------VLGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLM-VVFDVHRHLTSPDSRV 243 (424)
Q Consensus 178 ------------~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl-~VvD~~~~~~~~~~~~ 243 (424)
..........++.+|||||+..... .............+..++..++.++ +|+|++......+ .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~--~ 181 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--A 181 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCH--H
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhH--H
Confidence 0011112247899999999874321 0011100111222233445666555 7999976544433 2
Q ss_pred HHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC--CCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461 244 IRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSE 321 (424)
Q Consensus 244 ~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~ 321 (424)
..+++.+.. .+.|+++|+||+|+........+..+..... .++.+++++||++|.|+++++++|.+.. +|.+
T Consensus 182 ~~~~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~---~~~~ 255 (299)
T 2aka_B 182 LKIAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER---KFFL 255 (299)
T ss_dssp HHHHHHHCT---TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH---HHHH
T ss_pred HHHHHHhCC---CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH---HHHh
Confidence 234444432 2478999999999986533222222210001 1334688999999999999999998743 3444
Q ss_pred CCCCcchhhHH---HHHHHHHHHHHHhhcCccCCcce
Q 014461 322 DPLTMSEEVMK---NISLEVVRERLLDHVHQEIPYSI 355 (424)
Q Consensus 322 ~~~~~~~~~~~---~~~~e~ire~l~~~l~~eip~~~ 355 (424)
+...+++...+ ....+.+|+.+++++.+++||..
T Consensus 256 ~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~ 292 (299)
T 2aka_B 256 SHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 292 (299)
T ss_dssp HCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44555555544 67889999999999999999964
No 27
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=8.2e-22 Score=198.77 Aligned_cols=166 Identities=19% Similarity=0.262 Sum_probs=114.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+|+++|.||||||||+|+|++.+.+.+++.+++|++...+.+.+.+..+.+|||||+....... ....+...+...
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~---~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI---ISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGC---CCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccch---HHHHHHHHHHHH
Confidence 47999999999999999999999888789999999998888888888999999999987431100 011223445566
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
+..+|++++|+|++.+.+..+..+.++++.. +.|+++|+||+|+... .......++.. .++.+++++||++
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~NK~D~~~~--~~~~~~~~~~~-lg~~~~~~iSA~~ 149 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVANKAENLRE--FEREVKPELYS-LGFGEPIPVSAEH 149 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEEESCCSHHH--HHHHTHHHHGG-GSSCSCEECBTTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc--cHHHHHHHHHh-cCCCCEEEEeccC
Confidence 7899999999999887776666777777754 3789999999998532 11111133432 3554589999999
Q ss_pred CcChHHHHHHHHHhccCC
Q 014461 300 GAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~~~ 317 (424)
|.|+++|+++|.+.+++.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999888643
No 28
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.1e-21 Score=192.70 Aligned_cols=171 Identities=21% Similarity=0.313 Sum_probs=115.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
....+|+++|.+|||||||+|+|++... .++..+++|.......+...+..+.+|||||+........ ... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-~~~--~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISER-NEI--EKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTS-CHH--HHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhh-hHH--HHHHH
Confidence 4678999999999999999999999874 4667778887776666666778899999999875422111 111 11112
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
......+|++++|+|+++...........++..+..... +.|+++|+||+|+.... ...+..+.+. ..+. ++++||
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~-~~~~~~~~~~-~~~~-~~~~iS 316 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEE-NIKRLEKFVK-EKGL-NPIKIS 316 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHH-HHHHHHHHHH-HTTC-CCEECB
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChH-HHHHHHHHHH-hcCC-CeEEEe
Confidence 223346899999999875432222333344443332111 47899999999998642 3322222222 2233 489999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|+|+++++++|.+.+.
T Consensus 317 A~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 9999999999999998873
No 29
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.86 E-value=8.8e-22 Score=173.34 Aligned_cols=166 Identities=19% Similarity=0.196 Sum_probs=109.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecC-CCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-KTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|+|||||+|+|++..+..... ..+.+.......+......+.+|||||...... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~-- 78 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHS---------LA-- 78 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGG---------GT--
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhh---------hh--
Confidence 456899999999999999999999876543221 112222222211222345789999999754321 11
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++++|+|+++.. ....+..|+..+.....++.|+++|+||+|+...+....+....+....+. +++++
T Consensus 79 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 154 (181)
T 2efe_B 79 -PMYYRGAAAAIIVFDVTNQA--SFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL-FFMET 154 (181)
T ss_dssp -HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred -HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC-EEEEE
Confidence 12356789999999997532 222344555544433334689999999999976433333344455544455 49999
Q ss_pred ecCCCcChHHHHHHHHHhccCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~ 317 (424)
||++|.|+++++++|.+.+...
T Consensus 155 Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 155 SAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CSSSCTTHHHHHHHHHHTCC--
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988543
No 30
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.86 E-value=8.3e-22 Score=198.82 Aligned_cols=165 Identities=24% Similarity=0.345 Sum_probs=113.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..+++|+++|++|||||||+|+|++.....+++.+++|++.....+..++.++.+|||||+..+.... ....+.++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~v----e~~gi~~~ 297 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQV----EKIGVERS 297 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-----------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHH----HHHHHHHH
Confidence 35688999999999999999999998877788889999877655666788999999999986542111 12235667
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+..+..+|++++|+|++++.+..... ++..+. ..|+++|+||+|+...... . .+.......+++++|
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~---i~~~l~-----~~piivV~NK~Dl~~~~~~-~----~~~~~~~~~~~i~iS 364 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQE---IYEQVK-----HRPLILVMNKIDLVEKQLI-T----SLEYPENITQIVHTA 364 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHH---HHHHHT-----TSCEEEEEECTTSSCGGGS-T----TCCCCTTCCCEEEEB
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHH---HHHhcc-----CCcEEEEEECCCCCcchhh-H----HHHHhccCCcEEEEE
Confidence 77889999999999998765544433 344333 2689999999999864221 1 111222334699999
Q ss_pred cCCCcChHHHHHHHHHhccCCC
Q 014461 297 GLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~~ 318 (424)
|++|.|+++|+++|.+.+....
T Consensus 365 Aktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 365 AAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TTTTBSHHHHHHHHHHHHTTSS
T ss_pred CCCCCCHHHHHHHHHHHHhccC
Confidence 9999999999999999886544
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.86 E-value=9.4e-22 Score=170.54 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=104.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|||||||+|+|.+..+. .....++..........+ ...+.+|||||...+.. ...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---------~~~- 69 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA---------MRD- 69 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT---------HHH-
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH---------HHH-
Confidence 4689999999999999999999987653 223333333333333333 44689999999765421 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|++++|+|+++..+ ...+..++..+... ...+.|+++|+||+|+...+....+....+....+..++++
T Consensus 70 --~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1c1y_A 70 --LYMKNGQGFALVYSITAQST--FNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLE 145 (167)
T ss_dssp --HHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEE
T ss_pred --HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEE
Confidence 23456899999999975321 11222233322211 12358999999999997543322333444444443346999
Q ss_pred EecCCCcChHHHHHHHHHhc
Q 014461 295 TSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l 314 (424)
+||++|.|+++++++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998876
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=6.5e-22 Score=171.95 Aligned_cols=163 Identities=19% Similarity=0.190 Sum_probs=106.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
+.++|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||..... ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---------~~~--- 69 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---------SLA--- 69 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---------GGH---
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---------hhh---
Confidence 35789999999999999999999876542 12222222222222222233478999999975431 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC---hhhHHHHHHHHhcCCCCCeEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK---KKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+... ..........+....+. +++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~-~~~ 146 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQ--SFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL-LFF 146 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC-EEE
T ss_pred hhhhccCcEEEEEEecCChH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC-EEE
Confidence 23457789999999997532 2233444555443333346899999999999653 22223333444433344 499
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|+++++++|.+.+.
T Consensus 147 ~~Sa~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 147 ETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEeCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998764
No 33
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=2.8e-22 Score=187.65 Aligned_cols=163 Identities=18% Similarity=0.244 Sum_probs=113.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
.+|+++|.+|||||||+|+|+|... .+++.+++|.+...+.+...+..+.+|||||+...............+.+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~-~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSE-EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 4799999999999999999999874 478899999988888888888899999999997653210000112223333333
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCC
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLK 299 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~ 299 (424)
...+|++++|+|+++ ......+..++.+. +.|+++|+||+|+..... .......+....+. +++++||++
T Consensus 81 ~~~~d~vi~VvDas~--~~~~~~l~~~l~~~------~~pvilv~NK~Dl~~~~~-~~~~~~~l~~~lg~-~vi~~SA~~ 150 (256)
T 3iby_A 81 DLEYDCIINVIDACH--LERHLYLTSQLFEL------GKPVVVALNMMDIAEHRG-ISIDTEKLESLLGC-SVIPIQAHK 150 (256)
T ss_dssp HSCCSEEEEEEEGGG--HHHHHHHHHHHTTS------CSCEEEEEECHHHHHHTT-CEECHHHHHHHHCS-CEEECBGGG
T ss_pred hCCCCEEEEEeeCCC--chhHHHHHHHHHHc------CCCEEEEEEChhcCCcCC-cHHHHHHHHHHcCC-CEEEEECCC
Confidence 378999999999975 11122233333322 478999999999864321 10011223333354 499999999
Q ss_pred CcChHHHHHHHHHh
Q 014461 300 GAGLKALTQYLMEQ 313 (424)
Q Consensus 300 g~gi~~L~~~i~~~ 313 (424)
|.|+++++++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999987
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.86 E-value=2e-21 Score=171.93 Aligned_cols=163 Identities=16% Similarity=0.165 Sum_probs=109.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||.... ..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~ 74 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF------------RS 74 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG------------HH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH------------HH
Confidence 456899999999999999999999876642 2223333333333334444 57899999997532 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.........+....+. ++++
T Consensus 75 ~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 151 (186)
T 2bme_A 75 VTRSYYRGAAGALLVYDITSRE--TYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL-MFLE 151 (186)
T ss_dssp HHHTTSTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred HHHHHHhcCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 2334578899999999997532 222333444443332234689999999999964322222233444444454 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 152 ~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 152 TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=173.24 Aligned_cols=165 Identities=16% Similarity=0.187 Sum_probs=105.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|||||||+|+|++..+.... .+..+.+.....+..++ ..+.+|||||...+. .
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---------~-- 90 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC-KSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---------S-- 90 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH---------H--
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC-CCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH---------H--
Confidence 345689999999999999999999987764322 22222222223333333 578999999975321 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+...+....+..+.+........++
T Consensus 91 -~~~~~~~~~d~iilV~D~~~~~s--~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 167 (192)
T 2il1_A 91 -ITSAYYRSAKGIILVYDITKKET--FDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC 167 (192)
T ss_dssp -HHHHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE
T ss_pred -HHHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE
Confidence 12234567899999999975322 222333443333322345899999999999754333333445555553334699
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|+++++++|.+.+.
T Consensus 168 ~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 168 EASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.86 E-value=3e-21 Score=170.22 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=111.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+. .....++.......+..++ ..+.+|||||...+....
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 71 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFV--DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFP---------- 71 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCC----------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHH----------
Confidence 35689999999999999999999966642 3444444444444444555 467899999987553211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++. .....+..|+..+.. ....+.|+++|+||+|+...+....+....+....+. +++
T Consensus 72 --~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 146 (181)
T 3t5g_A 72 --QTYSIDINGYILVYSVTSI--KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA-AFL 146 (181)
T ss_dssp --GGGTTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EEE
T ss_pred --HHHHhcCCEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC-cEE
Confidence 1235678999999999752 222233444443322 1223589999999999976544444445555555565 499
Q ss_pred EEecCCCcChHHHHHHHHHhccCCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
++||++|.|+++++++|.+.+....
T Consensus 147 ~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 147 ESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999886543
No 37
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=9.8e-22 Score=170.12 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=104.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|||||||+|+|.+..+.. ....++.......+..++ ..+.+|||||..... ...
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~-- 68 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA---------SMR-- 68 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH--
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---------HHH--
Confidence 46899999999999999999999876542 222333322233333343 458999999975431 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+...++........+....+. ++++
T Consensus 69 -~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 144 (167)
T 1kao_A 69 -DLYIKNGQGFILVYSLVNQQ--SFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC-PFME 144 (167)
T ss_dssp -HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-CEEE
T ss_pred -HHHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC-CEEE
Confidence 12356789999999997532 112233333332221 123589999999999865333223333444443454 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHHh
Confidence 999999999999999988763
No 38
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=1.2e-21 Score=174.88 Aligned_cols=165 Identities=19% Similarity=0.207 Sum_probs=110.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....++|+++|.+|||||||+|+|++..+....... +.+.......+...+..+.+|||||...+.. ..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~- 91 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA---------IT- 91 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT---------TH-
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhh---------hh-
Confidence 345689999999999999999999987765332222 2222222222333446789999999865421 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.........+....+. .+++
T Consensus 92 --~~~~~~~d~vi~v~D~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 166 (193)
T 2oil_A 92 --SAYYRGAVGALLVFDLTKHQ--TYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL-LFLE 166 (193)
T ss_dssp --HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred --HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEE
Confidence 12356789999999997532 222344555555443334689999999999975332223334445444455 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 167 ~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 167 TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987763
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=2.7e-21 Score=173.88 Aligned_cols=163 Identities=14% Similarity=0.120 Sum_probs=108.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
..++|+++|.+|||||||+|+|++..+... ....+++..............+.+|||||...+ ....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~------------~~~~ 74 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY------------RTIT 74 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------------HHHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh------------cchH
Confidence 468999999999999999999998775422 122222222222222223457899999997542 1123
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....++ +++++|
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~S 151 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEE--SFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF-EFFEAS 151 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC-EEEECB
T ss_pred HHhhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC-eEEEEE
Confidence 34567899999999997532 223344455544433334589999999999976433323334444444455 599999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++++++|.+.+.
T Consensus 152 a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 152 AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTTBSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 40
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.86 E-value=1.7e-22 Score=200.35 Aligned_cols=258 Identities=16% Similarity=0.195 Sum_probs=131.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec---------------------C---CccEEEEeCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK---------------------A---DTQICIFDTP 195 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~---------------------~---~~~i~l~Dtp 195 (424)
++|+++|.||||||||+|+|++.+ +.+++++++|+....+.... . ..++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999988 66789999998776665321 1 2479999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC---------CchH-------------------------
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT---------SPDS------------------------- 241 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~---------~~~~------------------------- 241 (424)
|+...... ........+..++.+|++++|+|+++... ++..
T Consensus 80 G~~~~a~~-----~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~ 154 (397)
T 1wxq_A 80 GLVPGAHE-----GRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA 154 (397)
T ss_dssp --------------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred Ccccchhh-----hhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 98643210 01122333456789999999999976411 0000
Q ss_pred --------------------------HHHHHHHHhccCC------------------CCCCcEEEEEecCCCCCChhhHH
Q 014461 242 --------------------------RVIRLIERMGKQA------------------PPKQKRVLCMNKVDLVTKKKDLL 277 (424)
Q Consensus 242 --------------------------~~~~~l~~~~~~~------------------~~~~p~ilV~NK~Dl~~~~~~~~ 277 (424)
.+...+..+.... ...+|+++|+||+|+. ....+.
T Consensus 155 k~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~~~~l~ 233 (397)
T 1wxq_A 155 KRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA-SDEQIK 233 (397)
T ss_dssp STTTSSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-CHHHHH
T ss_pred HHHhhcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCccccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-chHHHH
Confidence 0111111111000 0137999999999987 333344
Q ss_pred HHHHHHhcCCCCCeEEEEecCCCcChHHHHH-HHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcceE
Q 014461 278 KVAEQFKHLPGYERIFMTSGLKGAGLKALTQ-YLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIE 356 (424)
Q Consensus 278 ~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~~ 356 (424)
...+.+... + .+++++||+.+.|+++|++ .|.++++.+++.|+...++++..+ ++|.+||++++.+. + ..+.
T Consensus 234 ~l~~~~~~~-~-~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~--~~e~ire~~l~~~g-~--~g~~ 306 (397)
T 1wxq_A 234 RLVREEEKR-G-YIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKR--ALMVIKEKVLDRFG-S--TGVQ 306 (397)
T ss_dssp HHHHHHHHT-T-CEEEEECHHHHHHHHSCSSSCCCCSCC-------------------CTTHHHHHHTSSSS-S--CSHH
T ss_pred HHHHHHhhc-C-CcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHH--HHHHHHHHHHHHhC-c--chHH
Confidence 444444322 3 3599999999999999888 888999999999988888876555 56889988887765 2 1111
Q ss_pred EEEEEEEeccCCeEEEEEE----EEeeCCC--cccEEeccCCchHHHHHHHHHHHHHHhcC
Q 014461 357 HRLIDWKDLRDGSLRIEQH----LITNKLS--QRKILVGKNGSKIGRIGVEANEELRSIFK 411 (424)
Q Consensus 357 ~~~~~~~~~~~~~~~i~~~----i~~~~~s--~k~ivig~~g~~i~~i~~~~~~~l~~~~~ 411 (424)
..+.+..+..=+.+++... -+..... -...++-++|+++.+++..+|.++++-|.
T Consensus 307 ~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~ 367 (397)
T 1wxq_A 307 EVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFL 367 (397)
T ss_dssp HHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEE
T ss_pred HHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhh
Confidence 1110000000012222220 0000111 11344448899999999999999999875
No 41
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.86 E-value=1.6e-21 Score=171.13 Aligned_cols=164 Identities=17% Similarity=0.162 Sum_probs=106.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeec-CCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVS-RKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~-~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|||||||+|+|++..+.... ...+.+.......+......+.+|||||..... . .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~---~ 80 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR---------A---V 80 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC---------H---H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh---------h---h
Confidence 45789999999999999999999987754211 111222222221122233578999999975431 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 157 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRS--TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL-LFLEA 157 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred HHHHhccCCEEEEEEeCcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence 223456789999999997532 222333444444333334689999999999965332222334444444454 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 158 Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 158 SAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CTTTCTTHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 42
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.86 E-value=1.5e-21 Score=169.14 Aligned_cols=161 Identities=17% Similarity=0.075 Sum_probs=103.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|+|||||+|+|.+..+. .....++.......+..++ ..+.+|||||...+. ...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~-- 69 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR-- 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------HHH--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---------HHH--
Confidence 4689999999999999999999987753 3333344333333333333 478999999975431 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 70 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (168)
T 1u8z_A 70 -DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV-NYVE 145 (168)
T ss_dssp -HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred -HHHhhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC-eEEE
Confidence 22356789999999997532 122333343333221 112579999999999975322222233333333344 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 43
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=1.6e-21 Score=169.73 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=104.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||...... .
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------~ 71 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA------------L 71 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCCCCCSCEEEEEEEESSSCEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhh------------h
Confidence 46899999999999999999999776532 1222222222222333333 4688999999754321 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 148 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDED--SFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA-KHYHT 148 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEE
T ss_pred HHHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-eEEEe
Confidence 123467889999999997532 223334444443322223578999999999975332222334444444454 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 149 Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 149 SAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998764
No 44
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=173.90 Aligned_cols=166 Identities=14% Similarity=0.114 Sum_probs=108.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+..++ ..+.+|||||...+. .
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~-- 93 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSER-QGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR---------T-- 93 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH---------H--
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCC-CCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH---------H--
Confidence 34568999999999999999999998765321 111111222223333444 578999999975431 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+...++
T Consensus 94 -~~~~~~~~~d~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 170 (201)
T 2hup_A 94 -ITQSYYRSANGAILAYDITKRS--SFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAI 170 (201)
T ss_dssp -HHHHHHTTCSEEEEEEETTBHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEE
T ss_pred -HHHHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEE
Confidence 1223467889999999997532 1223334554443333346899999999999753222233344555555664699
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++||++|.|+++++++|.+.+..
T Consensus 171 ~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 171 ETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 45
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.86 E-value=9.2e-22 Score=171.43 Aligned_cols=162 Identities=19% Similarity=0.283 Sum_probs=104.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|++|||||||+|+|.+.... ++..+++|.....+.+..++..+.+|||||+..+.... ....+...+
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~ 76 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY 76 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSS-CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCee-ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHH
Confidence 3578999999999999999999987653 45566666665555566677889999999987653211 111122222
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.....+|++++|+|+++. .....++..+.. .+.|+++|+||+|+....... ...+.+....+. +++++||
T Consensus 77 ~~~~~~~~~i~v~D~~~~-----~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~-~~~~~SA 146 (165)
T 2wji_A 77 IINEKPDLVVNIVDATAL-----ERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGV-KVVPLSA 146 (165)
T ss_dssp HHHHCCSEEEEEEETTCH-----HHHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTS-CEEECBG
T ss_pred HhcCCCCEEEEEecCCch-----hHhHHHHHHHHh---cCCCEEEEEEchHhccccChh-hHHHHHHHHhCC-CEEEEEc
Confidence 222368999999999641 122334444332 147899999999985321100 012223322344 4999999
Q ss_pred CCCcChHHHHHHHHHhc
Q 014461 298 LKGAGLKALTQYLMEQA 314 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l 314 (424)
++|.|+++++++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998876
No 46
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.86 E-value=1e-21 Score=189.35 Aligned_cols=208 Identities=14% Similarity=0.201 Sum_probs=128.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc-----eeecCCC---Cceee--------------------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-----AAVSRKT---NTTTH-------------------------------- 176 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~-----~~~~~~~---~tt~~-------------------------------- 176 (424)
...++|+|+|.+|||||||+|+|+|..+ ..++..+ .+++.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3567899999999999999999999876 3333444 22221
Q ss_pred ------EE-------------EEEEecCCccEEEEeCCCcccCCC-CCChhhhhhHHHHHHhhcccccEEEEEEeC-CCC
Q 014461 177 ------EV-------------LGVMTKADTQICIFDTPGLMLNKS-GYSHKDVKVRVESAWSAVNLFEVLMVVFDV-HRH 235 (424)
Q Consensus 177 ------~~-------------~~~~~~~~~~i~l~DtpG~~~~~~-~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~-~~~ 235 (424)
.. ..+....+.++.+|||||+..... ..+..........+...+..+|++++|+|+ +.+
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 001333557899999999864210 011111123344555667889999999997 444
Q ss_pred CCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCC-CeEEEE---ecCC---CcChHHHH
Q 014461 236 LTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGY-ERIFMT---SGLK---GAGLKALT 307 (424)
Q Consensus 236 ~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~i---SA~~---g~gi~~L~ 307 (424)
....+. .+..++.. .+.|+++|+||+|+........+.++. ....+ ..++++ ||.+ |.|+++++
T Consensus 182 ~~~~~~~~i~~~~~~------~~~~~i~v~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~ 253 (315)
T 1jwy_B 182 LANSDALQLAKEVDP------EGKRTIGVITKLDLMDKGTDAMEVLTG--RVIPLTLGFIGVINRSQEDIIAKKSIRESL 253 (315)
T ss_dssp STTCSHHHHHHHHCS------SCSSEEEEEECTTSSCSSCCCHHHHTT--SSSCCTTCEEECCCCCHHHHSSSCCHHHHH
T ss_pred hhhhHHHHHHHHhCC------CCCcEEEEEcCcccCCcchHHHHHHhC--CCccCCCCeEEEecCChhhhccCCCHHHHH
Confidence 433332 34443332 247899999999998653322332221 11111 234555 5555 78999999
Q ss_pred HHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcce
Q 014461 308 QYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSI 355 (424)
Q Consensus 308 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~~ 355 (424)
+.+.+.++.+++ |+ ...++....++.. .+|+.+++++.+++||..
T Consensus 254 ~~~~~~~~~~~~-~~-~~~~~~~~~~l~~-~lre~l~~~~~~elP~~~ 298 (315)
T 1jwy_B 254 KSEILYFKNHPI-YK-SIANRSGTAYLSK-TLNKLLMFHIRDTLPDLK 298 (315)
T ss_dssp HHHHHHHHTCTT-GG-GSGGGCSHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-cc-cchhccCHHHHHH-HHHHHHHHHHHHHhHHHH
Confidence 999999988776 44 3344444555555 599999999999999964
No 47
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.86 E-value=3.8e-21 Score=180.21 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=115.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+.++|+++|.+|||||||+|+|++.... +++.+++|.....+.+...+..+.+|||||+........ ...+.+.+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~----~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSI----DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSH----HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCH----HHHHHHHH
Confidence 4689999999999999999999998765 788899998888887887888999999999876533211 11222222
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.....+|++++|+|+++. . ....++..+... +.|+++|+||+|+...+... .....+....++ +++++||
T Consensus 79 ~~~~~~d~ii~V~D~t~~----~-~~~~~~~~l~~~---~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~-~vi~~SA 148 (258)
T 3a1s_A 79 LLKGDADLVILVADSVNP----E-QSLYLLLEILEM---EKKVILAMTAIDEAKKTGMK-IDRYELQKHLGI-PVVFTSS 148 (258)
T ss_dssp HHHSCCSEEEEEEETTSC----H-HHHHHHHHHHTT---TCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCS-CEEECCT
T ss_pred HhhcCCCEEEEEeCCCch----h-hHHHHHHHHHhc---CCCEEEEEECcCCCCccchH-HHHHHHHHHcCC-CEEEEEe
Confidence 222678999999999752 1 122233333221 47899999999985421110 012233333355 4999999
Q ss_pred CCCcChHHHHHHHHHhcc
Q 014461 298 LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~ 315 (424)
++|.|+++++++|.+.+.
T Consensus 149 ~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 149 VTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHhh
Confidence 999999999999998775
No 48
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.86 E-value=1e-21 Score=173.49 Aligned_cols=162 Identities=14% Similarity=0.129 Sum_probs=86.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+|+|.+..+.. ...+.++.+.....+..++ ..+.+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------ 73 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNS-TFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI------------ 73 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhh------------
Confidence 46899999999999999999999766531 2222333333333344444 67899999997643211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|++++. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. +++++
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~ 150 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEK--SFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI-KFMET 150 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHHhcCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC-eEEEE
Confidence 123467889999999997532 223444555554433334689999999999976433223333444444454 49999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 151 Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 151 SAKANINVENAFFTLARDIK 170 (183)
T ss_dssp CC---CCHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 49
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.2e-21 Score=173.92 Aligned_cols=163 Identities=16% Similarity=0.173 Sum_probs=108.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||...+ ..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------------~~ 90 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF------------RS 90 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG------------HH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH------------HH
Confidence 356899999999999999999999876542 2222222333333344444 47899999997532 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+..+.+....+. .+++
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 167 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEE--SFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM-YYLE 167 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-CEEE
T ss_pred HHHHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-EEEE
Confidence 2335578899999999997532 222233444444332234589999999999975322222333444433344 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 168 TSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 50
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=3.7e-21 Score=175.13 Aligned_cols=166 Identities=17% Similarity=0.230 Sum_probs=109.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
...++|+++|.+|||||||+|+|++..+... ....+++..... .....+ ..+.+|||||........
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT-FLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE-EEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE-EEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 4578999999999999999999997765422 222233322222 222222 568999999986543211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
. ..+..+|++++|+|++++.+. ..+..|+..+......+.|+++|+||+|+.............+....+. +++
T Consensus 79 ~---~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 152 (218)
T 4djt_A 79 D---VYYIGASGAILFFDVTSRITC--QNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY-EYF 152 (218)
T ss_dssp H---HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCC-EEE
T ss_pred H---HHhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-cEE
Confidence 1 224668999999999754322 2233444443322223478999999999986544444555666666565 499
Q ss_pred EEecCCCcChHHHHHHHHHhccCCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
++||++|.|+++++++|.+.+....
T Consensus 153 ~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 153 EISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred EEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999887654
No 51
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.86 E-value=2.4e-21 Score=172.40 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=107.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|||||||+|+|++..+... ....+++..............+.+|||||...+...
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------ 87 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTI------------ 87 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCS------------
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhh------------
Confidence 3468999999999999999999998775422 222222222222222233457899999997654221
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+..+.+....++ +++++
T Consensus 88 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 164 (189)
T 2gf9_A 88 TTAYYRGAMGFLLMYDIANQE--SFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF-EFFEA 164 (189)
T ss_dssp GGGGGTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHhccCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC-eEEEE
Confidence 123467789999999997532 122233444444333234589999999999975432222334444444455 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 165 Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 165 SAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 52
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.85 E-value=7.4e-21 Score=171.57 Aligned_cols=163 Identities=17% Similarity=0.159 Sum_probs=110.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|.+..+.. ...+..+.......+..++ ..+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTIT---------- 74 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHH----------
Confidence 346899999999999999999999876542 2223333232223333343 478999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. ++++
T Consensus 75 --~~~~~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 149 (206)
T 2bcg_Y 75 --SSYYRGSHGIIIVYDVTDQE--SFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM-PFLE 149 (206)
T ss_dssp --GGGGTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-CEEE
T ss_pred --HHhccCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEE
Confidence 13467789999999997532 223344455544433334689999999999976433333334445544555 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 150 ~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 150 TSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 53
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=2.7e-21 Score=195.94 Aligned_cols=162 Identities=22% Similarity=0.376 Sum_probs=122.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcc-cCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLM-LNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~-~~~~~~~~~~~~~~~~~~ 216 (424)
.+++|+++|.||||||||+|+|++...+.+++.++||++.....+..++.++.+|||||+. .+..... ...+..+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve----~~gi~~~ 317 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVE----RLGIERT 317 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCC----CCCHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHH----HHHHHHH
Confidence 4589999999999999999999998877789999999988777778888999999999987 5432111 1235566
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+..+..+|++|+|+|++++.+..+..+ ++.+. +.|+++|+||+|+... ....+ ...+.. .+ .++++||
T Consensus 318 ~~~~~~aD~vl~VvD~s~~~s~~~~~i---l~~l~-----~~piivV~NK~DL~~~-~~~~~-~~~~~~-~~-~~~i~iS 385 (482)
T 1xzp_A 318 LQEIEKADIVLFVLDASSPLDEEDRKI---LERIK-----NKRYLVVINKVDVVEK-INEEE-IKNKLG-TD-RHMVKIS 385 (482)
T ss_dssp HHHHHHCSEEEEEEETTSCCCHHHHHH---HHHHT-----TSSEEEEEEECSSCCC-CCHHH-HHHHHT-CS-TTEEEEE
T ss_pred HHHhhcccEEEEEecCCCCCCHHHHHH---HHHhc-----CCCEEEEEECcccccc-cCHHH-HHHHhc-CC-CcEEEEE
Confidence 777889999999999987654433333 33221 4789999999999753 12222 222322 12 2499999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|++|.|+++|+++|.+.+.
T Consensus 386 Aktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 386 ALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GGGTCCHHHHHHHHHHHTH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998765
No 54
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.2e-20 Score=167.47 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=106.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|++..+....+..+.+. ..+..++..+.+|||||...... ...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~---------~~~-- 78 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRS---------SWN-- 78 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC----EEEEETTEEEEEEECCC----CG---------GGH--
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce----EEEEECCEEEEEEECCCCHhHHH---------HHH--
Confidence 457999999999999999999999877654443333322 22345678899999999864321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 291 (424)
..+..+|++++|+|+++.. .......++..+... ...+.|+++|+||+|+.... ...+..+.+.. ..+. .
T Consensus 79 -~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~-~ 153 (187)
T 1zj6_A 79 -TYYTNTEFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW-H 153 (187)
T ss_dssp -HHHTTCCEEEEEEETTCTT--THHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSCE-E
T ss_pred -HHhcCCCEEEEEEeCCCHH--HHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhhcCCCc-E
Confidence 2356789999999997642 223344455444322 12358999999999997642 22222233221 1222 5
Q ss_pred EEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
++++||++|.|+++++++|.+.+...+...+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 154 IQACCALTGEGLCQGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHCC------
T ss_pred EEEccCCCCcCHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999876654433
No 55
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.85 E-value=6.4e-21 Score=167.19 Aligned_cols=163 Identities=16% Similarity=0.125 Sum_probs=105.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||...+ ..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~ 71 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF------------RS 71 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG------------HH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh------------hh
Confidence 356899999999999999999999876542 2222222222233334444 47899999997532 11
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY 289 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~ 289 (424)
.....+..+|++++|+|+++..+ ...+..|+..+.. ....+.|+++|+||+|+... ....+....+.. ..+.
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 148 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQS--FQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER-QVSTEEAQAWCRDNGDY 148 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC-SSCHHHHHHHHHHTTCC
T ss_pred hHHHHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc-ccCHHHHHHHHHhcCCc
Confidence 22345678999999999975321 1222333333221 11245799999999999743 222333444444 3333
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++++||++|.|+++++++|.+.+..
T Consensus 149 -~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 149 -PYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp -CEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 59999999999999999999988754
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.85 E-value=2.7e-21 Score=169.90 Aligned_cols=164 Identities=16% Similarity=0.143 Sum_probs=110.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+. .....++.......+..++ ..+.+|||||...+.. ..
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~ 74 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFV--SDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA---------MR 74 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCC--SSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC---------CH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCc--cccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH---------HH
Confidence 346789999999999999999999987553 4455555554444444454 4688999999765421 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
. ..+..+|++++|+|+++.. ....+..|+..+ ......+.|+++|+||+|+...+.........+....+. .+
T Consensus 75 ~---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 148 (181)
T 2fn4_A 75 E---QYMRAGHGFLLVFAINDRQ--SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV-AY 148 (181)
T ss_dssp H---HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EE
T ss_pred H---HHHhhCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC-eE
Confidence 1 2245689999999997521 222333444443 111223579999999999976433223334445444455 59
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987743
No 57
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.85 E-value=3.9e-21 Score=167.16 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=104.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|||||||+|+|++..+.. ...+..+.......+..++ ..+.+|||||....... .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---------~--- 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI---------T--- 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC--------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC---------C---
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh---------H---
Confidence 5789999999999999999999876532 2222333333333344443 46899999997654321 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
...+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+... ....+....+....+. +++++|
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~S 145 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERT--FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTADQGEALAKELGI-PFIESS 145 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC-CSCHHHHHHHHHHHTC-CEEECB
T ss_pred HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC-ccCHHHHHHHHHHcCC-eEEEEE
Confidence 123567899999999975321 222334444433322345899999999999543 2222333444443455 499999
Q ss_pred cCCCcChHHHHHHHHHhccC
Q 014461 297 GLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~ 316 (424)
|++|.|+++++++|.+.+.+
T Consensus 146 a~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 146 AKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999987743
No 58
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=1.3e-20 Score=169.43 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=101.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.+|||||||+|+|.+..+....+..+.+ ...+..++.++.+|||||...+... .
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~~~~~~l~i~Dt~G~~~~~~~------------~ 86 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELTIAGMTFTTFDLGGHIQARRV------------W 86 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS----CEEEEETTEEEEEEEECC----CCG------------G
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEEECCEEEEEEECCCcHhhHHH------------H
Confidence 45689999999999999999999988765433333333 2334566789999999997654210 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---------
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL--------- 286 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~--------- 286 (424)
...+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+... ....+..+.+...
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHE--RLLESKEELDSLMTDETIANVPILILGNKIDRPEA-ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-CCHHHHHHHHTCTTTCCCSSCC
T ss_pred HHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-CCHHHHHHHhCccccccccccc
Confidence 13456889999999997532 223344555544321 1235899999999999753 1222222222211
Q ss_pred ------CCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 287 ------PGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 287 ------~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.....+++|||++|.|+++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 1223699999999999999999998754
No 59
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.85 E-value=7.1e-21 Score=167.05 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=108.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+..+|+++|.+|||||||+|+|++..+.. ...++++.......+..++..+.+|||||...+....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 72 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTE-QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMR------------ 72 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSC-SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSC------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcccc-CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHH------------
Confidence 467899999999999999999999877642 3333444333333355677889999999986553211
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC------CC-C
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL------PG-Y 289 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~------~~-~ 289 (424)
...+..+|++++|+|++++..... .+.+..... .+.|+++|+||+|+.... .......+... .+ .
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~---~~~l~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~ 144 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQT---VEAINHAKA---ANVPIIVAINKMDKPEAN--PDRVMQELMEYNLVPEEWGGD 144 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHH---HHHHHHHGG---GSCCEEEEEETTTSSCSC--HHHHHHHHTTTTCCBTTTTSS
T ss_pred HHHHhhCCEEEEEEECCCCCcHHH---HHHHHHHHh---CCCCEEEEEECccCCcCC--HHHHHHHHHhcCcChhHcCCc
Confidence 134577899999999976543322 233443332 247899999999998632 12222222221 11 1
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.+++++||++|.|+++++++|.+.+..
T Consensus 145 ~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 145 TIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 369999999999999999999987643
No 60
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=2.7e-21 Score=170.01 Aligned_cols=159 Identities=13% Similarity=0.123 Sum_probs=104.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+....+ |+.......+..++ ..+.+|||||...+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------------- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEK---TESEQYKKEMLVDGQTHLVLIREEAGAPDA-------------- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSS---CSSSEEEEEEEETTEEEEEEEEECSSSCCH--------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCC---CcceeEEEEEEECCEEEEEEEEECCCCchh--------------
Confidence 456899999999999999999999877653222 22222222233333 46889999997531
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCch-HHHHHHHHHhccCCCCCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCCCe
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPD-SRVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~-~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~ 291 (424)
..+..+|++++|+|++++.+... ..+.+++........++.|+++|+||+|+.. .+....+....+....+..+
T Consensus 68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~ 144 (178)
T 2iwr_A 68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS 144 (178)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE
T ss_pred ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe
Confidence 23456899999999975322111 1233355555443334689999999999942 22222233333433322235
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++++||++|.|+++++++|.+.+.
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 61
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=2.1e-21 Score=170.33 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=106.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+.. ...+.++.+.....+..++ ..+.+|||||...+.. ...
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~~ 81 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIP 81 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---------GSH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH---------HHH
Confidence 356899999999999999999999776542 2233333333333344444 4789999999754321 111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.........+....+. ++++
T Consensus 82 ---~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 155 (179)
T 2y8e_A 82 ---SYIRDSTVAVVVYDITNTN--SFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV-MFIE 155 (179)
T ss_dssp ---HHHHTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred ---HHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC-eEEE
Confidence 2345789999999997532 122233444443322223589999999999975332222223333333344 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 156 ~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 156 TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp EBTTTTBSHHHHHHHHHHTCC
T ss_pred EeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998774
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1e-21 Score=175.10 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=110.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|||||||+|+|++..+... ....+++...........+..+.+|||||...+ ...
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------------~~~ 88 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY------------RTI 88 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC------------HHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH------------HHH
Confidence 4568999999999999999999997654321 112223333333333445667999999996532 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
....+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.......+.+....+. +++++
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 165 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEE--SFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF-DFFEA 165 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEEC
T ss_pred HHHHHccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC-eEEEE
Confidence 223467889999999997532 222334455544433334689999999999965433333344445444455 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 166 Sa~~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 166 SAKENISVRQAFERLVDAIC 185 (191)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 63
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.85 E-value=5.1e-21 Score=169.53 Aligned_cols=160 Identities=17% Similarity=0.164 Sum_probs=106.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|||||||+|+|++..+. ....+++..........++. .+.+|||||...+.. ...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~- 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---------MRD- 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCC--CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT---------THH-
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH---------HHH-
Confidence 4689999999999999999999987753 34444554444444444444 477899999765421 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|++++|+|+++.. ....+..++..+.. ....+.|+++|+||+|+... ....+....+....+.. +++
T Consensus 71 --~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~-~~~~~~~~~~~~~~~~~-~~~ 144 (189)
T 4dsu_A 71 --QYMRTGEGFLCVFAINNTK--SFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARSYGIP-FIE 144 (189)
T ss_dssp --HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSC-SSCHHHHHHHHHHHTCC-EEE
T ss_pred --HHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEECccCccc-ccCHHHHHHHHHHcCCe-EEE
Confidence 2345689999999997531 22233344433322 12235899999999999754 22333344444444554 999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=4.1e-21 Score=167.19 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=101.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|||||||+|+|++..+.. ....+........... ....+.+|||||...+. ...
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------~~~-- 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRE--SYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP---------AMQ-- 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCS--SCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---------HHH--
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---------HHH--
Confidence 35799999999999999999999876531 1111111111222222 23468999999976431 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++..+.. ...+...+.+... ..++.|+++|+||+|+...+.........+....+. ++++
T Consensus 69 -~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 145 (172)
T 2erx_A 69 -RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKG-DVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC-AFME 145 (172)
T ss_dssp -HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC----CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred -HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC-eEEE
Confidence 22345689999999997532111 1123333443321 113579999999999865422222223333333344 5999
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|+++++++|.+.+..
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 146 TSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp CBTTTTBSHHHHHHHHHHTCCS
T ss_pred ecCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999987743
No 65
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.85 E-value=4.5e-21 Score=180.83 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=111.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.++|+++|.||||||||+|+|++... .+++.+++|.....+.+.. +..+.+|||||+....... ....+...+-
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS----PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence 47899999999999999999998764 3788899998877776666 7889999999987653211 1112222222
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
....+|++++|+|+++. .....+...+.. .+.|+++|+||+|+....... .....+....+.+ ++++||+
T Consensus 77 ~~~~~d~vi~V~D~t~~-----e~~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-vi~~SA~ 146 (272)
T 3b1v_A 77 LSQRADSILNVVDATNL-----ERNLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVP-VVATSAL 146 (272)
T ss_dssp HTTCCSEEEEEEEGGGH-----HHHHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSC-EEECBTT
T ss_pred hcCCCCEEEEEecCCch-----HhHHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCC-EEEEEcc
Confidence 22468999999999641 112223332221 147899999999985421100 1122233333444 9999999
Q ss_pred CCcChHHHHHHHHHhccC
Q 014461 299 KGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~ 316 (424)
+|.|+++++++|.+.+..
T Consensus 147 ~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 147 KQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTBSHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987743
No 66
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.85 E-value=9.4e-21 Score=168.36 Aligned_cols=164 Identities=19% Similarity=0.188 Sum_probs=106.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE-EEEEecC-----------CccEEEEeCCCcccCCCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV-LGVMTKA-----------DTQICIFDTPGLMLNKSG 203 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~-~~~~~~~-----------~~~i~l~DtpG~~~~~~~ 203 (424)
....++|+++|.+|||||||+|+|++..+... ..+....+.. ...+... ...+.+|||||....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--- 83 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSK-FITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF--- 83 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCS-CCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcC-cccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---
Confidence 34568999999999999999999998765321 1111111111 2223333 347999999997532
Q ss_pred CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHH
Q 014461 204 YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQ 282 (424)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~ 282 (424)
.......+..+|++++|+|+++..+ ...+..++..+..... .+.|+++|+||+|+...+....+....
T Consensus 84 ---------~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 84 ---------RSLTTAFFRDAMGFLLLFDLTNEQS--FLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp ---------HHHHHHTTTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ---------HHHHHHHHcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 1123345778999999999975322 2223344444332211 358999999999997532222233444
Q ss_pred HhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+....+. +++++||++|.|+++++++|.+.+.
T Consensus 153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4443455 4999999999999999999988763
No 67
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.2e-21 Score=197.35 Aligned_cols=164 Identities=23% Similarity=0.356 Sum_probs=107.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..+|+++|.||||||||+|+|++...+.+++.+++|++...+...+.+..+.+|||||+...... ........+..
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~----~~~~~~~~~~~ 78 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP----FLAQIRQQAEI 78 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C----HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh----HHHHHHHHHHH
Confidence 36899999999999999999999988888999999999888888888889999999998633211 11222334455
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGL 298 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~ 298 (424)
.+..+|++++|+|++.+.+..+..+.+++.. .+.|+++|+||+|+....... .++.. .++..++++||+
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~------~~~pvilv~NK~D~~~~~~~~----~~~~~-lg~~~~~~iSA~ 147 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRANI----YDFYS-LGFGEPYPISGT 147 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT------CCSCEEEEEECCCC-----CC----CSSGG-GSSCCCEECBTT
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH------cCCCEEEEEECccCccchhhH----HHHHH-cCCCCeEEEeCc
Confidence 6788999999999988777665555555543 247999999999987532111 11221 244468999999
Q ss_pred CCcChHHHHHHHHHhccCC
Q 014461 299 KGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~~ 317 (424)
+|.|+++|+++|.+.+++.
T Consensus 148 ~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGC
T ss_pred CCCChHHHHHHHHHhcCcc
Confidence 9999999999999988753
No 68
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=8.5e-21 Score=169.52 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=110.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+. .....|+..........++ ..+.+|||||...+...
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 87 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRL---------- 87 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTT----------
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHH----------
Confidence 346799999999999999999999987753 3333444443333344444 34699999997654211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCC--hhhHHHHHHHHhcCCCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTK--KKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~~ 290 (424)
....+..+|++++|+|+++..+. ..+ ..|+..+... .++.|+++|+||+|+... .....+....+....+..
T Consensus 88 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 88 --RPLSYADSDVVLLCFAVNNRTSF--DNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred --hHhhccCCcEEEEEEECCCHHHH--HHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 12346788999999999753221 121 2333332221 235899999999999753 223334445555555665
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
.++++||++|.|+++++++|.+.+...
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999987544
No 69
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=3.6e-21 Score=171.63 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=106.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+...... ..+.......+..++ ..+.+|||||...+... .
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------~- 87 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI---------T- 87 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC---------C-
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEEECCEEEEEEEEECCCchhhhhh---------H-
Confidence 4568999999999999999999998776432222 122222222233333 57899999997654321 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+..+.+....+. .+++
T Consensus 88 --~~~~~~~d~ii~v~d~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 162 (191)
T 2a5j_A 88 --RSYYRGAAGALLVYDITRRE--TFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL-IFME 162 (191)
T ss_dssp --HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEEE
T ss_pred --HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC-EEEE
Confidence 12356789999999997532 222334455544333334689999999999965322222333444443444 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 163 ~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 163 TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999987763
No 70
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=4.5e-21 Score=172.45 Aligned_cols=164 Identities=15% Similarity=0.141 Sum_probs=110.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe--cCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT--KADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~--~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+. .....++......... .....+.+|||||...+....
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 89 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---------- 89 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC----------
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH----------
Confidence 46799999999999999999999987765 2333333333333333 345678999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++. .....+..|+..+... ...+.|+++|+||+|+...+.........+....+. +++
T Consensus 90 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 164 (201)
T 3oes_A 90 --YSFIIGVHGYVLVYSVTSL--HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA-TFM 164 (201)
T ss_dssp --GGGTTTCCEEEEEEETTCH--HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred --HHHHhcCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC-eEE
Confidence 1345778999999999752 2223444555554332 123579999999999975433333334444444455 599
Q ss_pred EEecCCCcChHHHHHHHHHhccCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
++||++|.|+++++++|.+.+...
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988544
No 71
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=173.30 Aligned_cols=164 Identities=17% Similarity=0.147 Sum_probs=100.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee-ecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA-VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~-~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
.+.++|+++|.+|||||||+|+|++..+.. .....+.+.......+......+.+|||||..... . .
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~---~ 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFR---------S---I 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCH---------H---H
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchh---------h---h
Confidence 457999999999999999999999876532 22222222222222222233568999999975431 1 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC------ChhhHHHHHHHHhcCCCC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT------KKKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~------~~~~~~~~~~~~~~~~~~ 289 (424)
....+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+.. .+....+....+....+.
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKS--FLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred HHHHHhhCCEEEEEEECCChHH--HHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC
Confidence 2234567899999999975322 22233444443332233589999999999852 112222333444433444
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++++||++|.|+++++++|.+.+.
T Consensus 172 -~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 172 -LFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp -EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred -eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998774
No 72
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=169.97 Aligned_cols=163 Identities=17% Similarity=0.071 Sum_probs=108.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|.+..+. ....+++.......+..++ ..+.+|||||...+. ...
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~ 79 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR 79 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCC--TTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH---------HHH
Confidence 346789999999999999999999987753 3444444444333344444 478999999975431 111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|+++.. ....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. ++
T Consensus 80 ---~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~ 153 (206)
T 2bov_A 80 ---DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NY 153 (206)
T ss_dssp ---HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EE
T ss_pred ---HHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC-eE
Confidence 22356689999999997532 2223334444333221 23589999999999975432222233334333344 59
Q ss_pred EEEecCCCcChHHHHHHHHHhcc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++||++|.|+++++++|.+.+.
T Consensus 154 ~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 154 VETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp EEECTTTCTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 73
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.85 E-value=3e-20 Score=165.78 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=105.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+..+|+++|.+|||||||+|+|.+..+....+..+. ....+..++..+.+|||||...+... ..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~i~Dt~G~~~~~~~------------~~ 85 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELAIGNIKFTTFDLGGHIQARRL------------WK 85 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEEETTEEEEEEECCCSGGGTTS------------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEEECCEEEEEEECCCCHHHHHH------------HH
Confidence 457999999999999999999998776543333333 23445567789999999998654221 11
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----------
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---------- 286 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---------- 286 (424)
..+..+|++++|+|++++. .......++..+... ...+.|+++|+||+|+... ....+..+.+...
T Consensus 86 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPE--RFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEG 162 (190)
T ss_dssp GGCTTCCEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCS
T ss_pred HHHhcCCEEEEEEECCChH--HHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccc
Confidence 3457889999999997532 223344444443221 1235899999999999763 2222222222211
Q ss_pred CCCCeEEEEecCCCcChHHHHHHHHHh
Q 014461 287 PGYERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 287 ~~~~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
....++++|||++|.|+++++++|.+.
T Consensus 163 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 163 QRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 122369999999999999999999864
No 74
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.85 E-value=4.7e-20 Score=163.11 Aligned_cols=160 Identities=15% Similarity=0.198 Sum_probs=107.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+++|.+..+....+..+.+. ..+..++..+.+|||||..... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~----~~~~~~~~~l~i~Dt~G~~~~~------------~~~ 77 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI----KSVQSQGFKLNVWDIGGQRKIR------------PYW 77 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEE----EEEEETTEEEEEEECSSCGGGH------------HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEE----EEEEECCEEEEEEECCCCHHHH------------HHH
Confidence 457899999999999999999999887655444444332 2234557889999999975421 112
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc--C-CCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH--L-PGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~--~-~~~~~~ 292 (424)
...+..+|++++|+|+++.. .......++..+... ...+.|+++|+||+|+.... ...+..+.+.. . .....+
T Consensus 78 ~~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (181)
T 1fzq_A 78 RSYFENTDILIYVIDSADRK--RFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-PASEIAEGLNLHTIRDRVWQI 154 (181)
T ss_dssp HHHHTTCSEEEEEEETTCGG--GHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEEE
T ss_pred HHHhCCCCEEEEEEECcCHH--HHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-CHHHHHHHhCchhccCCceEE
Confidence 23457889999999997532 223344455544221 22358999999999997642 22222222211 1 111258
Q ss_pred EEEecCCCcChHHHHHHHHHhcc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++|||++|.|+++++++|.+.+.
T Consensus 155 ~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 155 QSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp EECCTTTCTTHHHHHHHHHHTC-
T ss_pred EEccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998774
No 75
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.84 E-value=1.8e-20 Score=163.19 Aligned_cols=160 Identities=19% Similarity=0.188 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|.+..+....+ |.......+...+..+.+|||||...... ..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 68 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIP----TIGFNVETVTYKNLKFQVWDLGGLTSIRP------------YW 68 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCC----CSSEEEEEEEETTEEEEEEEECCCGGGGG------------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCC----cCccceEEEEECCEEEEEEECCCChhhhH------------HH
Confidence 356899999999999999999998876643222 22222334556688899999999864321 01
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (424)
...+..+|++++|+|+++..+ ......++..+... ...+.|+++|+||+|+.... ...+..+.+. ...+. +
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~ 144 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDR--IGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-TSSEMANSLGLPALKDRKW-Q 144 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTT--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTGGGCTTSCE-E
T ss_pred HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-CHHHHHHHhCchhccCCce-E
Confidence 234678999999999976432 22333444443221 12358999999999997652 2222223222 12233 5
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++++||++|.|+++++++|.+.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 145 IFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEECcCCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999988753
No 76
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=6e-21 Score=170.04 Aligned_cols=171 Identities=16% Similarity=0.140 Sum_probs=112.0
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceee-cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV-SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~-~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
...+.++|+++|.+|||||||+|+|++..+... ....+++.......+......+.+|||||...... ..
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~ 81 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT---------LT 81 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC---------SH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh---------hh
Confidence 345678999999999999999999998765421 11122222222222223345789999999765421 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|+++.. ....+..|+..+.... ..+.|+++|+||+|+.... ...+....+....+. .+
T Consensus 82 ---~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~ 154 (195)
T 1x3s_A 82 ---PSYYRGAQGVILVYDVTRRD--TFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE-VDRNEGLKFARKHSM-LF 154 (195)
T ss_dssp ---HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-SCHHHHHHHHHHTTC-EE
T ss_pred ---HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc-cCHHHHHHHHHHcCC-EE
Confidence 12356789999999997532 2223445666654432 2358999999999996432 222233344444454 49
Q ss_pred EEEecCCCcChHHHHHHHHHhccCCCCCC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQRPWSE 321 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~~~~~~ 321 (424)
+++||++|.|+++++++|.+.+...+..+
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~ 183 (195)
T 1x3s_A 155 IEASAKTCDGVQCAFEELVEKIIQTPGLW 183 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHTSGGGT
T ss_pred EEecCCCCCCHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999887655433
No 77
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.84 E-value=5.7e-21 Score=168.76 Aligned_cols=165 Identities=14% Similarity=0.159 Sum_probs=107.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
++.++|+++|.+|||||||+++|++..+. .....++..........++ ..+.+|||||...+...
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 69 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL----------- 69 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHH-----------
Confidence 45789999999999999999999976653 2333333333222233333 45779999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~ 281 (424)
....+..+|++++|+|++++.+. ..+. .|+..+.... ++.|+++|+||+|+...... ..+...
T Consensus 70 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 145 (186)
T 1mh1_A 70 -RPLSYPQTDVSLICFSLVSPASF--ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145 (186)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -HHHhccCCcEEEEEEECCChhhH--HHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHH
Confidence 11246788999999999753221 1221 2333332211 25899999999999764211 112233
Q ss_pred HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
.+....+..+++++||++|.|+++++++|.+.+...+
T Consensus 146 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 3444455546999999999999999999999986654
No 78
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=172.16 Aligned_cols=163 Identities=18% Similarity=0.188 Sum_probs=103.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.... .+..+.......+..++ ..+.+|||||...+... .
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---------~- 91 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDS-NHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV---------T- 91 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC---------C-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccC-CCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH---------H-
Confidence 45789999999999999999999987764322 22222222222333344 57999999997543211 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+.........+....+. .+++
T Consensus 92 --~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 166 (200)
T 2o52_A 92 --RSYYRGAAGALLVYDITSRE--TYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL-MFLE 166 (200)
T ss_dssp --HHHHTTCSEEEEEEETTCHH--HHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred --HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC-EEEE
Confidence 12356789999999997532 222334455544333334689999999999965322222233344444454 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 167 ~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 167 TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.84 E-value=6.9e-21 Score=168.21 Aligned_cols=162 Identities=17% Similarity=0.071 Sum_probs=107.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+. .....++.......+...+ ..+.+|||||...+. ...
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~- 83 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA---------AIR- 83 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------HHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH---------HHH-
Confidence 45789999999999999999999987753 3334444443333334444 478999999975431 111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++.. ....+..|+..+.... ..+.|+++|+||+|+...+.........+....+. +++
T Consensus 84 --~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~ 158 (187)
T 2a9k_A 84 --DNYFRSGEGFLCVFSITEME--SFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV-NYV 158 (187)
T ss_dssp --HHHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEE
T ss_pred --HHHhccCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC-eEE
Confidence 22356789999999997532 1223333433332211 12579999999999975322222333444444455 599
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++||++|.|+++++++|.+.+.
T Consensus 159 ~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 159 ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=1.7e-20 Score=162.33 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=104.1
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
++|+++|.+|||||||+|+|++..+... .+ |.......+...+..+.+|||||..... . .....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------~---~~~~~ 64 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIR---------P---LWRHY 64 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEECSSCEEEEEECCCCGGGH---------H---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEEECCEEEEEEEcCCChhhH---------H---HHHHH
Confidence 4799999999999999999997665422 22 2222233355677889999999985421 1 12234
Q ss_pred cccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCeEEE
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYERIFM 294 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~ 294 (424)
+..+|++++|+|+++. .....+..++..+.. ....+.|+++|+||+|+.... ...+..+.+.. ..+. ++++
T Consensus 65 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~~~~ 140 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDR--ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNW-YIQA 140 (164)
T ss_dssp TTTCSEEEEEEETTCG--GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCSSCCE-EEEE
T ss_pred hccCCEEEEEEECCCH--HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-CHHHHHHHhCcccccCccE-EEEE
Confidence 6789999999999753 222334455554432 122358999999999997642 22222232221 1122 5899
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC-
T ss_pred cccCCCcCHHHHHHHHHHHHh
Confidence 999999999999999998874
No 81
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=1.9e-21 Score=170.75 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=105.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC---ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD---TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
.+.++|+++|.+|||||||+|+|.+..+... ..+.++.+.....+...+ ..+.+|||||...+.. ..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---------~~ 73 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQ-YKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK---------ML 73 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHH-HHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT---------TH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCC-CCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc---------hh
Confidence 4568999999999999999999998765311 111121222233334443 6799999999765421 11
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC---CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ---APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~---~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
. ..+..+|++++|+|+++..+ ...+..|+..+... .....|+++|+||+|+...+....+....+....+.
T Consensus 74 ~---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~- 147 (178)
T 2hxs_A 74 D---KYIYGAQGVLLVYDITNYQS--FENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF- 147 (178)
T ss_dssp H---HHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred h---HHHhhCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC-
Confidence 1 23567899999999975322 12222333333211 011234899999999975322222333444443444
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
+++++||++|.|+++++++|.+.+...+
T Consensus 148 ~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 148 SSHFVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp EEEEECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 4999999999999999999999886654
No 82
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=7.3e-21 Score=165.53 Aligned_cols=162 Identities=14% Similarity=0.107 Sum_probs=100.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|.+|||||||+|+|.+.........+ ++.......+..++ ..+.+|||||.........
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~----------- 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME-NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ----------- 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC-CcCCeeeEEEEECCeEEEEEEEECCCccccchhhh-----------
Confidence 478999999999999999999876654333322 22333333333343 5688999999865421110
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++++|+|+++. .....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. +++++
T Consensus 70 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDR--RSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KHIET 146 (169)
T ss_dssp CHHHHHCSEEEEEEETTCH--HHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred hhhhccCCEEEEEEECCCh--HHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC-cEEEe
Confidence 0124458999999999752 12223334444433221 12589999999999975433344445555555566 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 147 Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 147 SAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp BTTTTBSHHHHHHHHHHHHH
T ss_pred cCccCCCHHHHHHHHHHHHH
Confidence 99999999999999988763
No 83
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.84 E-value=8.5e-21 Score=171.31 Aligned_cols=161 Identities=14% Similarity=0.168 Sum_probs=106.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||++++++..+. .....++.......+..++. .+.+|||||...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL----------- 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCC--C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTT-----------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCC--CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHH-----------
Confidence 46799999999999999999999976653 34444554444444444544 4559999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~~ 281 (424)
....+..+|++++|+|+++..+. ..+. .|+..+.... ++.|+++|+||+|+...... ......
T Consensus 95 -~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 170 (204)
T 4gzl_A 95 -RPLSYPQTDVFLICFSLVSPASF--ENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 170 (204)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred -HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence 11346788999999999753222 1221 2333332221 35899999999999765321 122333
Q ss_pred HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+....+..++++|||++|.|+++++++|.+.+
T Consensus 171 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 171 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 455555666799999999999999999998754
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.84 E-value=3.6e-20 Score=163.63 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=106.6
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...+.++|+++|.+|||||||+|+|++..+.......+.+.. .+..++..+.+|||||.......
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~----------- 81 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESLRSS----------- 81 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEEETTEEEEEEEESSSGGGTCG-----------
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEEECCEEEEEEECCCCHhHHHH-----------
Confidence 345679999999999999999999999887555555554432 23346788999999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGY 289 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~ 289 (424)
....+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+.... ...+..+.+. ...+.
T Consensus 82 -~~~~~~~~d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~ 157 (181)
T 2h17_A 82 -WNTYYTNTEFVIVVVDSTDRE--RISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-TVAEISQFLKLTSIKDHQW 157 (181)
T ss_dssp -GGGGGTTCCEEEEEEETTCTT--THHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE
T ss_pred -HHHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-CHHHHHHHhCcccccCCce
Confidence 123467889999999997642 223344444443321 12358999999999997641 1222222221 11122
Q ss_pred CeEEEEecCCCcChHHHHHHHHHh
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
.++++||++|.|+++++++|.+.
T Consensus 158 -~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 158 -HIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp -EEEECBTTTTBTHHHHHHHHHTC
T ss_pred -EEEEccCCCCcCHHHHHHHHHhh
Confidence 58999999999999999999764
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=1.1e-20 Score=178.52 Aligned_cols=167 Identities=20% Similarity=0.278 Sum_probs=117.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+.++|+++|++|||||||+|+|+|... .++..+++|.....+.+...+..+.+|||||+....... ....+...+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~----~~~~~~~~~ 76 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHS----IDELIARNF 76 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSC----HHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCC----HHHHHHHHh
Confidence 457999999999999999999999877 678899999888888888888899999999997653321 112233333
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEec
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSG 297 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA 297 (424)
.....+|++++|+|+++. .....+...+.+.+ ..|+++|+||+|+....... .....+....+.+ ++++||
T Consensus 77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~-~~~~Sa 147 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEME-----VKNIILVLNKFDLLKKKGAK-IDIKKMRKELGVP-VIPTNA 147 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTT-----CCSEEEEEECHHHHHHHTCC-CCHHHHHHHHSSC-EEECBG
T ss_pred hhccCCcEEEEEecCCcc--hhhHHHHHHHHhcC-----CCCEEEEEEChhcCcccccH-HHHHHHHHHcCCc-EEEEEe
Confidence 334679999999999752 11112222222221 27899999999975421100 0122333333544 999999
Q ss_pred CCCcChHHHHHHHHHhccCCC
Q 014461 298 LKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 298 ~~g~gi~~L~~~i~~~l~~~~ 318 (424)
++|.|+++++++|.+.+....
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999876543
No 86
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=168.67 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=108.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|||||||+|+|.+.... ....+.++.+.....+..++ ..+.+|||||..... ..+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~ 89 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG---------GWL 89 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG---------HHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch---------hhh
Confidence 345689999999999999999999875432 12334444433333333444 467899999985421 111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.. ..+..+|++++|+|+++.. ....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+. .+
T Consensus 90 ~~--~~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~-~~ 164 (195)
T 3cbq_A 90 RD--HCLQTGDAFLIVFSVTDRR--SFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC-KH 164 (195)
T ss_dssp HH--HHHHHCSEEEEEEETTCHH--HHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC-EE
T ss_pred HH--HhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCC-EE
Confidence 11 2345789999999997532 2223444554443221 13589999999999976433333334455544455 59
Q ss_pred EEEecCCCcChHHHHHHHHHhccC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++||++|.|+++++++|.+.+..
T Consensus 165 ~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 165 IETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=4.2e-22 Score=181.99 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=112.6
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
.....++|+++|.+|||||||+|+++... ........+++...........+..+.+|||||...+....
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 81 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLR--------- 81 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCC---------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHH---------
Confidence 34567899999999999999999965443 34456667777766655555556679999999976543211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
. ..+..+|++++|+|+++..+ ...+..|+..+.... .+.|+++|+||+|+....... ....+....+. .++
T Consensus 82 ~---~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~-~~~ 152 (221)
T 3gj0_A 82 D---GYYIQAQCAIIMFDVTSRVT--YKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNL-QYY 152 (221)
T ss_dssp H---HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTC-EEE
T ss_pred H---HHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhC-CCCCEEEEEECCccccccccH--HHHHHHHHcCC-EEE
Confidence 1 23457899999999975322 222334444433221 258999999999997642111 11112222233 599
Q ss_pred EEecCCCcChHHHHHHHHHhccCCCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
+|||++|.|+++++++|.+.+...+.
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHHHTCTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999998876543
No 88
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=7.3e-20 Score=161.42 Aligned_cols=160 Identities=15% Similarity=0.154 Sum_probs=107.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|.+..+.......+.+. ..+..++..+.+|||||....... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~------------~ 79 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV----ETLSYKNLKLNVWDLGGQTSIRPY------------W 79 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE----EEEEETTEEEEEEEEC----CCTT------------G
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce----EEEEECCEEEEEEECCCCHhHHHH------------H
Confidence 467999999999999999999999887754444444332 223456788999999998654221 1
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~~ 292 (424)
...+..+|++++|+|+++.. ....+..++..+.... ..+.|+++|+||+|+.... ...+..+.+... ....++
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~ 156 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKD--RMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-SASEVSKELNLVELKDRSWSI 156 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTT--THHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-CHHHHHHHTTTTTCCSSCEEE
T ss_pred HHHhccCCEEEEEEECCCHH--HHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCceEE
Confidence 13467889999999997642 2334455555554321 3468999999999997642 222222222211 111258
Q ss_pred EEEecCCCcChHHHHHHHHHhcc
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++||++|.|+++++++|.+.+.
T Consensus 157 ~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 157 VASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.84 E-value=1.3e-20 Score=162.73 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=104.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
+.++|+++|.+|||||||+|+|.+..+. .....++.......+...+ ..+.+|||||...+. . ...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~------~---~~~- 69 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS------A---MRD- 69 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC------H---HHH-
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCc--cccCCccceEEEEEEEECCEEEEEEEEECCCchhhh------H---HHH-
Confidence 3578999999999999999999987653 2233333333333333333 457899999976431 1 111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+... .........+....+. ++++
T Consensus 70 --~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~ 143 (166)
T 2ce2_X 70 --QYMRTGEGFLCVFAINNTK--SFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARSYGI-PYIE 143 (166)
T ss_dssp --HHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-CEEE
T ss_pred --HhhccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc-ccCHHHHHHHHHHcCC-eEEE
Confidence 2345689999999997531 222333444433221 1124789999999999763 2223334444444455 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 144 ~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 144 TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp ECTTTCTTHHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998764
No 90
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.84 E-value=1.3e-20 Score=167.25 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=108.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
...+.++|+++|.+|||||||+|++++..+.... ..+ .......+..++ ..+.+|||||...+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~--~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------- 81 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE--SPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ----------- 81 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC--CTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 4567899999999999999999999987764222 122 222223344444 456789999975421
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCC--ChhhHHHHHHHHhcCCCC
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVT--KKKDLLKVAEQFKHLPGY 289 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~~~~~ 289 (424)
.+..+|++++|+|+++.. ....+..|+..+..... .+.|+++|+||+|+.. .+....+....+....+.
T Consensus 82 ------~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~ 153 (184)
T 3ihw_A 82 ------FAAWVDAVVFVFSLEDEI--SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR 153 (184)
T ss_dssp ------HHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT
T ss_pred ------eecCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC
Confidence 345689999999997532 22344456665543321 3579999999999942 222233344555555554
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+++|||++|.|+++++++|.+.+.
T Consensus 154 ~~~~e~Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 154 CTYYETCATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp CEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988763
No 91
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=1.1e-20 Score=166.83 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=108.3
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhh
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
....+.++|+++|.+|||||||+|+|++..+. .....++..........++. .+.+|||||...+..
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------- 81 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA--------- 81 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS---------
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH---------
Confidence 34556799999999999999999999977553 33333433333334444444 356799999765421
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
... ..+..+|++++|+|+++..+ ...+..|+..+.. ....+.|+++|+||+|+...+....+....+....+..
T Consensus 82 ~~~---~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 156 (183)
T 3kkq_A 82 MRE---QYMRTGDGFLIVYSVTDKAS--FEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP 156 (183)
T ss_dssp SHH---HHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC
T ss_pred HHH---HHHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe
Confidence 111 23456899999999975321 1223333333321 12235789999999999764433334444555444544
Q ss_pred eEEEEecC-CCcChHHHHHHHHHhcc
Q 014461 291 RIFMTSGL-KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 291 ~~~~iSA~-~g~gi~~L~~~i~~~l~ 315 (424)
++++||+ +|.|+++++++|.+.+.
T Consensus 157 -~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 157 -YIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp -EEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred -EEEeccCCCCCCHHHHHHHHHHHHh
Confidence 9999999 99999999999988763
No 92
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.84 E-value=1.1e-20 Score=170.88 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=106.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||...+... .
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~- 86 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP-SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI---------T- 86 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC-SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC---------C-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH---------H-
Confidence 456899999999999999999999876542 2233333333333344444 57899999997654221 1
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++..+ ...+..|+..+......+.|+++|+||+|+... ....+....+....++ ++++
T Consensus 87 --~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~ 160 (213)
T 3cph_A 87 --TAYYRGAMGIILVYDVTDERT--FTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR-VVTADQGEALAKELGI-PFIE 160 (213)
T ss_dssp --HHHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSC-CSCHHHHHHHHHHHTC-CEEE
T ss_pred --HHHhccCCEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc-ccCHHHHHHHHHHcCC-EEEE
Confidence 123567899999999975321 122334444433322335899999999999532 2222333344433455 4999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 161 ~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 161 SSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp CBTTTTBSSHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 93
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=2.7e-20 Score=166.47 Aligned_cols=162 Identities=22% Similarity=0.278 Sum_probs=106.1
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
......+|+++|.+|||||||+|+|++..+..+ ....+ .....+...+..+.+|||||...+.. .
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~------~--- 79 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG----YNVETFEKGRVAFTVFDMGGAKKFRG------L--- 79 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS----EEEEEEEETTEEEEEEEECCSGGGGG------G---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc----eeEEEEEeCCEEEEEEECCCCHhHHH------H---
Confidence 445678999999999999999999999887643 22222 22333456788899999999865421 0
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC--------CCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ--------APPKQKRVLCMNKVDLVTKKKDLLKVAEQFK 284 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~--------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 284 (424)
....+..+|++++|+|+++.. ....+..++..+... ...+.|+++|+||+|+.... ...+..+.+.
T Consensus 80 ---~~~~~~~~d~ii~v~D~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~ 153 (199)
T 4bas_A 80 ---WETYYDNIDAVIFVVDSSDHL--RLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK-TAAELVEILD 153 (199)
T ss_dssp ---GGGGCTTCSEEEEEEETTCGG--GHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC-CHHHHHHHHT
T ss_pred ---HHHHHhcCCEEEEEEECCcHH--HHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC-CHHHHHHHhc
Confidence 113467899999999997532 223333444443221 01257899999999998752 1222222221
Q ss_pred -----cCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 285 -----HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 285 -----~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
...+. .+++|||++|.|+++++++|.+.+..
T Consensus 154 ~~~~~~~~~~-~~~~~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 154 LTTLMGDHPF-VIFASNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp HHHHHTTSCE-EEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred chhhccCCee-EEEEeeCCCccCHHHHHHHHHHHHHH
Confidence 33343 59999999999999999999987753
No 94
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=6.6e-21 Score=165.34 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=104.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+|+|.+..+... ..+..+.+.....+..+ ...+.+|||||...+... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------~-- 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKD-YKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI---------T-- 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCC-SSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---------C--
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCC-CCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---------H--
Confidence 468999999999999999999998765421 12222222222223333 347899999997654221 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
...+..+|++++|+|+++.. ....+..|+..+.... .+.|+++|+||+|+...+....+..+.+....+. +++++
T Consensus 72 -~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~ 146 (168)
T 1z2a_A 72 -KAYYRGAQACVLVFSTTDRE--SFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL-RFYRT 146 (168)
T ss_dssp -HHHHTTCCEEEEEEETTCHH--HHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-EEEEC
T ss_pred -HHHhcCCCEEEEEEECcCHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCC-eEEEE
Confidence 12346789999999997532 1122333443332211 3578999999999975322222333444444455 59999
Q ss_pred ecCCCcChHHHHHHHHHhcc
Q 014461 296 SGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~ 315 (424)
||++|.|+++++++|.+.+.
T Consensus 147 Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 147 SVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp BTTTTBSSHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 95
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.84 E-value=1e-20 Score=172.02 Aligned_cols=163 Identities=15% Similarity=0.143 Sum_probs=108.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC------------CccEEEEeCCCcccCCCCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA------------DTQICIFDTPGLMLNKSGY 204 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~------------~~~i~l~DtpG~~~~~~~~ 204 (424)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+... ...+.+|||||...+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---- 97 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNP-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF---- 97 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCC-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH----
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCc-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH----
Confidence 456899999999999999999999876531 111111111111112222 457999999996432
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC-CCCcEEEEEecCCCCCChhhHHHHHHHH
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP-PKQKRVLCMNKVDLVTKKKDLLKVAEQF 283 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~ 283 (424)
.......+..+|++++|+|+++. .....+..|+..+..... .+.|+++|+||+|+...+.......+.+
T Consensus 98 --------~~~~~~~~~~~d~iilV~D~~~~--~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~ 167 (217)
T 2f7s_A 98 --------RSLTTAFFRDAMGFLLMFDLTSQ--QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167 (217)
T ss_dssp --------HHHHHHHHTTCCEEEEEEETTCH--HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHH
T ss_pred --------HhHHHHHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHH
Confidence 11223456788999999999752 223345567776654332 4689999999999975333223344555
Q ss_pred hcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
....+.. ++++||++|.|+++++++|.+.+.
T Consensus 168 ~~~~~~~-~~~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 168 ADKYGIP-YFETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHTTCC-EEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHCCCc-EEEEECCCCCCHHHHHHHHHHHHH
Confidence 5555554 999999999999999999988763
No 96
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.84 E-value=2.2e-20 Score=167.20 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=103.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-------------------------------
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD------------------------------- 186 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~------------------------------- 186 (424)
..++|+++|.+|||||||+|+|++..+.. ...+.+........+...+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHE-NTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCC-CcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 56899999999999999999999876541 1111111222222233332
Q ss_pred --------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCC
Q 014461 187 --------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ 258 (424)
Q Consensus 187 --------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (424)
..+.+|||||...... .....+..+|++++|+|++++. ....+..|+..+.... ..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~------------~~~~~~~~~d~~i~v~D~~~~~--s~~~~~~~~~~i~~~~--~~ 148 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS------------IVPLYYRGATCAIVVFDISNSN--TLDRAKTWVNQLKISS--NY 148 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT------------THHHHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHS--CC
T ss_pred cccCccceeEEEEEECCCcHHHHH------------HHHHHhcCCCEEEEEEECCCHH--HHHHHHHHHHHHHhhC--CC
Confidence 6789999999765421 1123456789999999997532 2223344554443221 27
Q ss_pred cEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 259 KRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 259 p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
|+++|+||+|+ .......+....+....+. +++++||++|.|+++++++|.+.+.
T Consensus 149 piilv~NK~D~-~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 149 IIILVANKIDK-NKFQVDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp EEEEEEECTTC-C-CCSCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEEECCCc-ccccCCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99999999994 3222222333444444455 5999999999999999999987763
No 97
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=3.3e-20 Score=164.30 Aligned_cols=161 Identities=18% Similarity=0.187 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|++++.......+..+ .....+..++..+.+|||||...... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~~------------~~ 79 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLG----FNIKTLEHRGFKLNIWDVGGQKSLRS------------YW 79 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSS----EEEEEEEETTEEEEEEEECCSHHHHT------------TG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCc----cceEEEEECCEEEEEEECCCCHhHHH------------HH
Confidence 457999999999999999999999877322222222 22333445788899999999854311 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 291 (424)
...+..+|++++|+|++++.+ ...+..++..+... ...+.|+++|+||+|+.... ...+..+.+.. ..+ .+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~-~~ 155 (186)
T 1ksh_A 80 RNYFESTDGLIWVVDSADRQR--MQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-SCNAIQEALELDSIRSHH-WR 155 (186)
T ss_dssp GGGCTTCSEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSC-EE
T ss_pred HHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-CHHHHHHHhChhhccCCc-eE
Confidence 234678999999999975322 23334444443221 12358999999999997642 22233333321 122 25
Q ss_pred EEEEecCCCcChHHHHHHHHHhccCC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
++++||++|.|+++++++|.+.+.+.
T Consensus 156 ~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 156 IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999988654
No 98
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=9e-21 Score=168.61 Aligned_cols=165 Identities=16% Similarity=0.178 Sum_probs=103.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+.... .+..+.+.....+..++ ..+.+|||||...... ...
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~ 87 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT-EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK--------SMV 87 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC-CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT--------TTH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCC-CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh--------hhh
Confidence 345789999999999999999999987664322 12222222222233333 5789999999753210 111
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC-CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA-PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
...+..+|++++|+|+++..+ ...+..|+..+.... ..+.|+++|+||+|+...+....+..+.+....+. .+
T Consensus 88 ---~~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~ 161 (189)
T 1z06_A 88 ---QHYYRNVHAVVFVYDMTNMAS--FHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM-PL 161 (189)
T ss_dssp ---HHHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-CE
T ss_pred ---HHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC-EE
Confidence 223567899999999975321 122333444332211 23589999999999965433233444555555555 49
Q ss_pred EEEecCCC---cChHHHHHHHHHhcc
Q 014461 293 FMTSGLKG---AGLKALTQYLMEQAV 315 (424)
Q Consensus 293 ~~iSA~~g---~gi~~L~~~i~~~l~ 315 (424)
+++||++| .|+++++++|.+.+.
T Consensus 162 ~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 162 FETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp EECCSSSGGGGSCHHHHHHHHC----
T ss_pred EEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 99999999 999999999987764
No 99
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=171.29 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=97.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+.. ....++.......+..++ ..+.+|||||...+..
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~----------- 97 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR----------- 97 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH-----------
Confidence 3467899999999999999999999877642 222333333222233333 3689999999764321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA 280 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~ 280 (424)
.....+..+|++++|+|+++..+ ...+. .|+..+.... ++.|+++|+||+|+...... ..+..
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 173 (214)
T 2j1l_A 98 -LRPLFYPDASVLLLCFDVTSPNS--FDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRG 173 (214)
T ss_dssp --------CEEEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHH
T ss_pred -HHHHHhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHH
Confidence 01123568899999999975321 12222 3443332211 35899999999999765321 11223
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
..+....+...+++|||++|.|+++++++|.+.+..
T Consensus 174 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 174 QEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 445544566569999999999999999999988754
No 100
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.84 E-value=3.4e-20 Score=164.94 Aligned_cols=162 Identities=13% Similarity=0.123 Sum_probs=107.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..+.++|+++|.+|||||||+|+|++..+.. .... |.......+...+..+.+|||||...+. ....
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~~- 85 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE--DMIP-TVGFNMRKITKGNVTIKLWDIGGQPRFR---------SMWE- 85 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SCCC-CCSEEEEEEEETTEEEEEEEECCSHHHH---------TTHH-
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC--ccCC-CCceeEEEEEeCCEEEEEEECCCCHhHH---------HHHH-
Confidence 4457899999999999999999999876541 1111 2222223355678889999999975431 1111
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC---CCCCe
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL---PGYER 291 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~---~~~~~ 291 (424)
..+..+|++++|+|+++. .....+..++..+... ...+.|+++|+||+|+.... ...+..+.+... .....
T Consensus 86 --~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 160 (188)
T 1zd9_A 86 --RYCRGVSAIVYMVDAADQ--EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-DEKELIEKMNLSAIQDREIC 160 (188)
T ss_dssp --HHHTTCSEEEEEEETTCG--GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCEE
T ss_pred --HHHccCCEEEEEEECCCH--HHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-CHHHHHHHhChhhhccCCee
Confidence 235778999999999753 2223444455444321 12358999999999997642 222223332211 11235
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++|||++|.|+++++++|.+.+.
T Consensus 161 ~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 161 CYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999998774
No 101
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-20 Score=171.76 Aligned_cols=164 Identities=15% Similarity=0.125 Sum_probs=105.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|.+..+..... +..+.......+..++ ..+.+|||||...+....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 79 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK-STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT---------- 79 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CcccceeEEEEEEECCEEEEEEEEECCCccchhhhH----------
Confidence 456899999999999999999999877653222 2222222222233444 578999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+......+.|+++|+||+|+...+....+....+....+. .+++
T Consensus 80 --~~~~~~~d~vilV~D~~~~~--s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~ 154 (223)
T 3cpj_B 80 --SAYYRGAVGALIVYDISKSS--SYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL-LFTE 154 (223)
T ss_dssp --GGGTTTCCEEEEEEC-CCHH--HHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred --HHHhccCCEEEEEEeCCCHH--HHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC-EEEE
Confidence 13457789999999997532 223344555554433334589999999999975322222334444444454 5999
Q ss_pred EecCCCcChHHHHHHHHHhccC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+||++|.|+++++++|.+.+..
T Consensus 155 ~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 155 TSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCCC-CCCHHHHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 102
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=1.2e-20 Score=171.83 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=109.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|||||||+++|++..+. .....|+.......+.. ....+.+|||||...+...
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------- 91 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNV---------- 91 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTT----------
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHH----------
Confidence 346799999999999999999999987764 23233333332222233 3457899999998654221
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC------------hhhHHHHHH
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK------------KKDLLKVAE 281 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~------------~~~~~~~~~ 281 (424)
....+..+|++++|+|+++..+... .+..|+..+.... ++.|+++|+||+|+... +....+...
T Consensus 92 --~~~~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 167 (214)
T 3q3j_B 92 --RPLCYSDSDAVLLCFDISRPETVDS-ALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGC 167 (214)
T ss_dssp --GGGGCTTCSEEEEEEETTCTHHHHH-HHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH
T ss_pred --HHHHcCCCeEEEEEEECcCHHHHHH-HHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHH
Confidence 1134678999999999976322211 1234444433222 35899999999999752 122233445
Q ss_pred HHhcCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCC
Q 014461 282 QFKHLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRP 318 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~ 318 (424)
.+....+...+++|||++|.| ++++|++|.+.+....
T Consensus 168 ~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 168 AIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 555555665699999999998 9999999999886543
No 103
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.83 E-value=6.3e-20 Score=163.28 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=106.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..+.++|+++|.+|||||||+|+|++....... . ..|.......+..++..+.+|||||...... .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~------ 83 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN------L------ 83 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG------G------
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHH------H------
Confidence 346789999999999999999999987732222 2 2233334444566788999999999764321 0
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEEecCCCCCChhhHHHHHHHHh--cCC-CC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVTKKKDLLKVAEQFK--HLP-GY 289 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~--~~~-~~ 289 (424)
....+..+|++++|+|+++.. ....+..++..+..... .+.|+++|+||+|+.... ...+..+.+. ... ..
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~ 160 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRL--RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-TSVKVSQLLCLENIKDKP 160 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHH--HHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-CHHHHHHHHTGGGCCSSC
T ss_pred HHHHHhcCCEEEEEEECCCHH--HHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-CHHHHHHHhChhhccCCc
Confidence 123467889999999997531 12233344443322211 358999999999997642 2222222221 111 12
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 161 WHICASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred eEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 25999999999999999999998774
No 104
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.83 E-value=2.7e-20 Score=167.68 Aligned_cols=162 Identities=21% Similarity=0.168 Sum_probs=105.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..++ ..+.+|||||...+....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---------- 74 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG---------- 74 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH----------
Confidence 356899999999999999999999877542 2222222333333333333 578999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc-CCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH-LPGY 289 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~~~ 289 (424)
...+..+|++++|+|++++.+ ...+..|+..+.. ....+.|+++|+||+|+... ....+....+.. ..+.
T Consensus 75 --~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 149 (207)
T 1vg8_A 75 --VAFYRGADCCVLVFDVTAPNT--FKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR-QVATKRAQAWCYSKNNI 149 (207)
T ss_dssp --CGGGTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC-CSCHHHHHHHHHHTTSC
T ss_pred --HHHHhCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc-ccCHHHHHHHHHhcCCc
Confidence 134567899999999975321 1122233332211 11134789999999999743 222333444444 3344
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++++||++|.|+++++++|.+.+.
T Consensus 150 -~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 150 -PYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp -CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999998874
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.83 E-value=8.1e-20 Score=162.32 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=108.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|.+..+....+..+.+ ...+...+..+.+|||||........
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~Dt~G~~~~~~~~------------ 83 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN----LETLQYKNISFEVWDLGGQTGVRPYW------------ 83 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC----EEEEEETTEEEEEEEECCSSSSCCCC------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE----EEEEEECCEEEEEEECCCCHhHHHHH------------
Confidence 46789999999999999999999987765433322222 22344567889999999986543211
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHh----cCCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK----HLPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~ 291 (424)
...+..+|++++|+|++++.+ ......++..+.. ....+.|+++|+||+|+.... ...+..+.+. ...+. +
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~-~ 159 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDR--MGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-SEAEIAEQLGVSSIMNRTW-T 159 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTT--HHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCCSSCE-E
T ss_pred HHHhhcCCEEEEEEeCCCHHH--HHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-CHHHHHHHhChhhccCCce-E
Confidence 123567899999999976432 2333444444322 222458999999999997642 2222222222 11222 5
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++++||++|.|+++++++|.+.+..
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 160 IVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEccCCCccCHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 106
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.83 E-value=3.9e-20 Score=181.41 Aligned_cols=172 Identities=20% Similarity=0.254 Sum_probs=113.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSA 219 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 219 (424)
..|+++|++|||||||+|+|++... .+++.+++|++...+.+..++..+.+|||||+... .+ .+..+.+..++..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~---lp-~~lve~f~~tl~~ 254 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG---IP-PQIVDAFFVTLSE 254 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS---CC-GGGHHHHHHHHHG
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhc---CC-HHHHHHHHHHHHH
Confidence 3499999999999999999999875 46778888888777777777888999999998643 22 2233446777788
Q ss_pred cccccEEEEEEeCCCCCCCchH---HHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-hHHHHHHHHhcC--CCCCeEE
Q 014461 220 VNLFEVLMVVFDVHRHLTSPDS---RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLLKVAEQFKHL--PGYERIF 293 (424)
Q Consensus 220 ~~~aD~vl~VvD~~~~~~~~~~---~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~--~~~~~~~ 293 (424)
+..+|++++|+|+++..+.... .+.+++..++. .+.|+++|+||+|+..... ........+... ....+++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGV---SGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTC---CSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCc---CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence 8999999999999754211121 23455565542 2478999999999976421 111122112111 1123589
Q ss_pred EEecCCCcChHHHHHHHHHhccCCCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
++||++|.|+++|+++|.+.+...++
T Consensus 332 ~~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 332 PISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EEECCCCcCHHHHHHHHHHHhcccCC
Confidence 99999999999999999998865543
No 107
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.83 E-value=6.8e-21 Score=169.84 Aligned_cols=164 Identities=11% Similarity=0.096 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEE-----EecCCccEEEEeCCCcccCCCCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGV-----MTKADTQICIFDTPGLMLNKSGY 204 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~-----~~~~~~~i~l~DtpG~~~~~~~~ 204 (424)
...++|+++|.+|||||||++.+.+........ ....|....... .......+.+|||||...+.
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 457899999999999999998887644321111 011122111110 11223468999999976432
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC----chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHH
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS----PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVA 280 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~----~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 280 (424)
... ...+..+|++++|+|++++... ....+..|+.+.. ....+.|+++|+||+|+... ...+..
T Consensus 89 ------~~~---~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~ 156 (198)
T 3t1o_A 89 ------ASR---KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMV 156 (198)
T ss_dssp ------HHH---HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHH
T ss_pred ------HHH---HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHH
Confidence 111 1346789999999999743111 1224556666653 22346899999999999764 233445
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+....+...++++||++|.|+++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence 56666667745999999999999999999988764
No 108
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.8e-20 Score=166.05 Aligned_cols=162 Identities=14% Similarity=0.127 Sum_probs=107.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+++|++..+. .....|+.......+..++ ..+.+|||||...+...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------- 82 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------- 82 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH-----------
Confidence 35689999999999999999999987653 3334444333333344444 56889999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~ 281 (424)
....+..+|++++|+|+++..+ ...+. .|+..+... .++.|+++|+||+|+.... ....+...
T Consensus 83 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 83 -RPLSYPMTDVFLICFSVVNPAS--FQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHH
T ss_pred -HHHhcCCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHH
Confidence 1134678899999999975321 11222 333333222 1258999999999997642 11122333
Q ss_pred HHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 282 QFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
.+....+...++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 159 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 4444445545999999999999999999988764
No 109
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.83 E-value=1.3e-20 Score=165.59 Aligned_cols=164 Identities=18% Similarity=0.178 Sum_probs=100.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
.+.++|+++|.+|||||||+|+|++..+.. ...+..+.+.....+..+ ...+.+|||||...+..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQ-QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS----------- 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCT-TC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh-----------
Confidence 356899999999999999999999876542 112222222222333333 35789999999654321
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc----CCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHhcCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK----QAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFKHLPG 288 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~----~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~ 288 (424)
.....+..+|++++|+|+++..+ ...+..|+..+.. ....+.|+++|+||+|+.... ....+....+.....
T Consensus 74 -~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 74 -LGVAFYRGADCCVLVYDVTNASS--FENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLG 150 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTT
T ss_pred -hhHHHhhcCCEEEEEEECCChHH--HHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcC
Confidence 12245678899999999975321 1222333333221 122458999999999996432 112333444544223
Q ss_pred CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 289 YERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 289 ~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+++++||++|.|+++++++|.+.+.
T Consensus 151 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 151 DIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp SCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 335999999999999999999988663
No 110
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=166.42 Aligned_cols=163 Identities=14% Similarity=0.125 Sum_probs=104.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+. ....+|+.......+..++. .+.+|||||...+....
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~--------- 85 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYP--TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLR--------- 85 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSG---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHh---------
Confidence 346789999999999999999999987743 44445554444444445553 57799999986543211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHH
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVA 280 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~ 280 (424)
...+..+|++++|+|+++..+ ...+. .|+..+.... ++.|+++|+||+|+.... ....+..
T Consensus 86 ---~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 86 ---PLCYTNTDIFLLCFSVVSPSS--FQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp ---GGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred ---HhhcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 124677899999999975322 12222 3443333221 258999999999997531 1122233
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+....+...+++|||++|.|+++++++|.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 160 KLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHh
Confidence 44444445546999999999999999999988764
No 111
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.83 E-value=2.5e-20 Score=165.65 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=103.2
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
..++.++|+++|.+|||||||+|+|++..+. .....++.......+...+ ..+.+|||||...+..
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 84 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---------- 84 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------------
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHH----------
Confidence 3456789999999999999999999987653 3333444443333344444 4589999999754321
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCe
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYER 291 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.....+..+|++++|+|+++.. ....+..|+..+... ...+.|+++|+||+|+... ....+....+....+. +
T Consensus 85 --~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~ 158 (190)
T 3con_A 85 --MRDQYMRTGEGFLCVFAINNSK--SFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKSYGI-P 158 (190)
T ss_dssp -------CTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC-CSCHHHHHHHHHHHTC-C
T ss_pred --HHHHhhCcCCEEEEEEECcCHH--HHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcc-cCCHHHHHHHHHHcCC-e
Confidence 1123467789999999997532 222333333333221 1124789999999999763 2222333444443455 4
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
++++||++|.|+++++++|.+.+.
T Consensus 159 ~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 159 FIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 112
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=2.9e-20 Score=168.46 Aligned_cols=164 Identities=15% Similarity=0.163 Sum_probs=110.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+++|.+..+. .....|+.......+..++ ..+.+|||||...+....
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 74 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLR---------- 74 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHH----------
Confidence 35689999999999999999999977653 3333344333333333333 478999999986543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh--------HHHHHHHHhc
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD--------LLKVAEQFKH 285 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~--------~~~~~~~~~~ 285 (424)
...+..+|++++|+|+++..+ ...+. .|+..+.... ++.|+++|+||+|+...... .......+..
T Consensus 75 --~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~ 149 (212)
T 2j0v_A 75 --PLSYRGADIFVLAFSLISKAS--YENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRK 149 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHH
T ss_pred --HhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHH
Confidence 124677899999999975321 12222 3444433221 25899999999999765321 2333444544
Q ss_pred CCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 286 LPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 286 ~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..+..+++++||++|.|+++++++|.+.+...
T Consensus 150 ~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 150 QIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence 44555699999999999999999999988653
No 113
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=4.6e-20 Score=164.83 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=104.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|++..+....+ |.......+...+..+.+|||||...... ...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------~~~-- 91 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQDKIRP---------LWR-- 91 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CT---------THH--
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCCHhHHH---------HHH--
Confidence 467899999999999999999999877643221 22223334556778999999999864321 111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCCCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPGYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~~~~ 291 (424)
..+..+|++++|+|+++.. ....+..++..+.. ....+.|+++|+||+|+.... ...+..+.+.. ..+ .+
T Consensus 92 -~~~~~~d~iilv~D~~~~~--s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~-~~ 166 (192)
T 2b6h_A 92 -HYFQNTQGLIFVVDSNDRE--RVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-PVSELTDKLGLQHLRSRT-WY 166 (192)
T ss_dssp -HHHHTCCEEEEEEETTCGG--GHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHTTGGGCSSCC-EE
T ss_pred -HHhccCCEEEEEEECCCHH--HHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-CHHHHHHHhCcccccCCc-eE
Confidence 2346789999999997532 22334455554322 112358999999999997642 22233333221 112 25
Q ss_pred EEEEecCCCcChHHHHHHHHHhcc
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++|||++|.|+++++++|.+.+.
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHTT
T ss_pred EEECcCCCcCCHHHHHHHHHHHHh
Confidence 899999999999999999998774
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.83 E-value=1.9e-20 Score=166.06 Aligned_cols=166 Identities=19% Similarity=0.274 Sum_probs=113.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++..+|+++|++|||||||+|+|++.... ++..+++|.....+.+...+..+.+|||||...+.... ....+...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----~~~~~~~~ 79 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARD 79 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSS----HHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCeeccceEEEEEeCCcEEEEEECCCcCcccccc----HHHHHHHH
Confidence 35689999999999999999999987643 56677778777777777778899999999987653211 01111111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
+.....+|++++|+|+++ ......++..+.. .+.|+++|+||+|+...... ....+.+....+. +++++|
T Consensus 80 ~~~~~~~~~~i~v~d~~~-----~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~-~~~~~S 149 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATA-----LERNLYLTLQLME---MGANLLLALNKMDLAKSLGI-EIDVDKLEKILGV-KVVPLS 149 (188)
T ss_dssp HHHHHCCSEEEEEEEGGG-----HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTC-CCCHHHHHHHHTS-CEEECB
T ss_pred HHhccCCCEEEEEecchh-----HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccc-hHHHHHHHHHhCC-CeEEEE
Confidence 111135899999999863 2233344444432 24789999999998542110 0112223332344 499999
Q ss_pred cCCCcChHHHHHHHHHhccCC
Q 014461 297 GLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~~~ 317 (424)
|++|.|+++++++|.+.+...
T Consensus 150 a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 150 AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp GGGTBSHHHHHHHHHHHHTTC
T ss_pred ecCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988654
No 115
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.9e-20 Score=166.27 Aligned_cols=164 Identities=19% Similarity=0.137 Sum_probs=104.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+... ...+........... ....+.+|||||...+. ...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------~~~- 73 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDT--YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP---------AMQ- 73 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCT--TSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH---------HHH-
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCc--ccCccccceeEEEEECCEEEEEEEEeCCChHHhH---------HHH-
Confidence 4578999999999999999999998765421 111211111222222 23468999999976431 111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCc-hHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSP-DSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~-~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++..+.. ...+...+...... .++.|+++|+||+|+.... ........+....+. .++
T Consensus 74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~-~~~ 148 (199)
T 2gf0_A 74 --RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGS-VEDIPVMLVGNKCDETQRE-VDTREAQAVAQEWKC-AFM 148 (199)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSC-GGGSCEEEEEECTTCSSCS-SCHHHHHHHHHHHTC-EEE
T ss_pred --HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCCccc-cCHHHHHHHHHHhCC-eEE
Confidence 12356689999999997532111 11233444443211 1247899999999997632 222223333333344 499
Q ss_pred EEecCCCcChHHHHHHHHHhccCC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
++||++|.|+++++++|.+.+...
T Consensus 149 ~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 149 ETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp ECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred EEecCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999988543
No 116
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=9.3e-22 Score=176.70 Aligned_cols=163 Identities=18% Similarity=0.185 Sum_probs=104.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+.. ...+.++.......+..++ ..+.+|||||........
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~---------- 99 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT---------- 99 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCS----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHH----------
Confidence 456899999999999999999999876542 2222333333333344444 568999999976543211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++. .....+..|+..+......+.|+++|+||+|+...+.........+....+.. +++
T Consensus 100 --~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~ 174 (199)
T 3l0i_B 100 --SSYYRGAHGIIVVYDVTDQ--ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLE 174 (199)
T ss_dssp --CC--CCCSEEEECC-CCCS--HHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BCC
T ss_pred --HHHhhcCCEEEEEEECCCH--HHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EEE
Confidence 1245778999999999763 23334556666665544456899999999999754322222233444455554 899
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||++|.|+++++++|.+.+.
T Consensus 175 vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 175 TSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp CCC---HHHHHHHHHHTTTTT
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 117
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.83 E-value=1.9e-20 Score=197.14 Aligned_cols=215 Identities=19% Similarity=0.269 Sum_probs=144.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceee----------------------------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTH---------------------------------------- 176 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~---------------------------------------- 176 (424)
...++|+|+|.+|+|||||+|+|+|..+...+..+ +|+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 35679999999999999999999997763222221 1111
Q ss_pred -----------E-EEEEEecCCccEEEEeCCCcccCCC-CCCh---hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCch
Q 014461 177 -----------E-VLGVMTKADTQICIFDTPGLMLNKS-GYSH---KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPD 240 (424)
Q Consensus 177 -----------~-~~~~~~~~~~~i~l~DtpG~~~~~~-~~~~---~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~ 240 (424)
. ...+......++.|+||||+..... ..+. ......+..++. ..+|++++|+|++..+...+
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhH
Confidence 1 1112334456799999999986321 1111 122233333332 67899999999987666655
Q ss_pred H-HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHH--HhcCCCCCeEEEEecCCCcChHHHHHHHHH---hc
Q 014461 241 S-RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQ--FKHLPGYERIFMTSGLKGAGLKALTQYLME---QA 314 (424)
Q Consensus 241 ~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~---~l 314 (424)
. .+...+... +.|+++|+||+|+............. +....++.+++++||++|.|+++|++.|.+ .+
T Consensus 206 ~l~ll~~L~~~------g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ff 279 (772)
T 3zvr_A 206 ALKIAKEVDPQ------GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF 279 (772)
T ss_dssp HHHHHHHHCTT------CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc------CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhc
Confidence 4 344444322 47899999999998653332222210 001124557899999999999999999987 46
Q ss_pred cCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCc----------ceEEEEEEEE
Q 014461 315 VQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPY----------SIEHRLIDWK 363 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~----------~~~~~~~~~~ 363 (424)
+.+|+. ..++++...+..+|++||++++++.+|+|| ++++.+++|.
T Consensus 280 pe~P~y---d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I~~~l~s~~vele~~~ 335 (772)
T 3zvr_A 280 LSHPSY---RHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVDEYK 335 (772)
T ss_dssp HHCTTT---GGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcch---hhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHhC
Confidence 666654 556788889999999999999999999999 6666655544
No 118
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.83 E-value=9.8e-21 Score=183.89 Aligned_cols=171 Identities=19% Similarity=0.280 Sum_probs=117.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
.+|+++|.+|||||||+|+|++.+.. +++++.+|.....+.+...+ ..+.+|||||+....... .......+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~-i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~-----~~l~~~fl~ 232 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQG-----VGLGHQFLR 232 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCT-----TTTHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCc-cccCCccccCceEEEEEeCCCceEEEecCCCCccccccc-----chhHHHHHH
Confidence 46999999999999999999987643 57888888887777776665 789999999986432111 111233345
Q ss_pred hcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCC--CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 219 AVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQA--PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
.+..+|++++|+|+++.. ......+..++.++.... ..+.|+++|+||+|+....+....+.+.+.. ..++++|
T Consensus 233 ~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~---~~~v~~i 309 (342)
T 1lnz_A 233 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTD---DYPVFPI 309 (342)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCS---CCCBCCC
T ss_pred HHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhc---CCCEEEE
Confidence 566789999999997521 122233333444433222 2358999999999998643333333333221 1358999
Q ss_pred ecCCCcChHHHHHHHHHhccCCCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
||++|.|+++|+++|.+.+...+.
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999999876553
No 119
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.83 E-value=2.4e-20 Score=173.69 Aligned_cols=189 Identities=15% Similarity=0.137 Sum_probs=119.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT-NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~-~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
....++|+++|.+|||||||+|+|++.........+ ++|...........+.++.+|||||+.................
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 346789999999999999999999998876554444 4777777777778899999999999865421100001112222
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-hHH-----HHHHHHhcCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-DLL-----KVAEQFKHLPG 288 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~~~-----~~~~~~~~~~~ 288 (424)
..+.....+|++|+|+|+++ ++..+..+.+++.+.......+.|+++|.||+|+..... +.. +.++.+.+..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 22344588999999999974 555555666777765322222478999999999976321 111 11233333334
Q ss_pred CCeEEEEecCC-----CcChHHHHHHHHHhccC-CCCCCCCCCc
Q 014461 289 YERIFMTSGLK-----GAGLKALTQYLMEQAVQ-RPWSEDPLTM 326 (424)
Q Consensus 289 ~~~~~~iSA~~-----g~gi~~L~~~i~~~l~~-~~~~~~~~~~ 326 (424)
.. ++.+++.. +.|+++|++.|.+.+.. ++..|+.+++
T Consensus 177 ~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~ 219 (247)
T 3lxw_A 177 GR-VCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVY 219 (247)
T ss_dssp TC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHH
T ss_pred Ce-EEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 33 55565544 68999999999999875 4555555443
No 120
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.83 E-value=7.3e-21 Score=171.28 Aligned_cols=164 Identities=20% Similarity=0.207 Sum_probs=79.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCcee-eEEEEEEecC----CccEEEEeCCCcccCCCCCChhhhhh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTT-HEVLGVMTKA----DTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~-~~~~~~~~~~----~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
...++|+++|.+|||||||+|+|++...........|+. +.....+..+ ...+.+|||||...+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------- 86 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY----------- 86 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-----------
Confidence 456899999999999999999999872221233333332 2222334444 357999999997532
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCC---CCCcEEEEEecCCCCC-ChhhHHHHHHHHhcCC
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAP---PKQKRVLCMNKVDLVT-KKKDLLKVAEQFKHLP 287 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~---~~~p~ilV~NK~Dl~~-~~~~~~~~~~~~~~~~ 287 (424)
.......+..+|++++|+|++++. ....+..|+..+..... .+.|+++|+||+|+.. .+....+....+....
T Consensus 87 -~~~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 87 -KEQISQYWNGVYYAILVFDVSSME--SFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTN 163 (208)
T ss_dssp -HHHHSTTCCCCCEEEEEEETTCHH--HHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHT
T ss_pred -HHHHHHHHhhCcEEEEEEECCCHH--HHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHc
Confidence 112334578899999999997532 22334455555443322 3589999999999976 3332233344454444
Q ss_pred CCCeEEEEecCC-CcChHHHHHHHHHhcc
Q 014461 288 GYERIFMTSGLK-GAGLKALTQYLMEQAV 315 (424)
Q Consensus 288 ~~~~~~~iSA~~-g~gi~~L~~~i~~~l~ 315 (424)
+. +++++||++ |.|+++++++|.+.+.
T Consensus 164 ~~-~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 TL-DFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp TC-EEEECCC-------CHHHHHHHHHHH
T ss_pred CC-EEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 54 599999999 9999999999998763
No 121
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.82 E-value=8.5e-21 Score=167.14 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=98.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE--EecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV--MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~--~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||++++.+..+. ....+|+....... .......+.+|||||...+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 72 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRL----------- 72 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 35689999999999999999999976643 22223332211111 1222345679999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChhh----------HHHHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKKD----------LLKVAEQF 283 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~----------~~~~~~~~ 283 (424)
....+..+|++++|+|+++..+ ...+. .|+..+.... ++.|+++|+||+|+...... ..+....+
T Consensus 73 -~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~ 148 (182)
T 3bwd_D 73 -RPLSYRGADVFILAFSLISKAS--YENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEEL 148 (182)
T ss_dssp -GGGGGTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHH
T ss_pred -HHhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHH
Confidence 1134577899999999975321 11222 2333333221 25899999999999765332 22334445
Q ss_pred hcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 284 KHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 284 ~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
....+..++++|||++|.|+++++++|.+.+.
T Consensus 149 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 149 KKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp HHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred HHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 54456556999999999999999999998764
No 122
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.8e-20 Score=167.81 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=103.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|++..+... ...++.......+..+ ...+.+|||||... . ...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~---------~~~- 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED-T---------IQR- 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C---------HHH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c---------cch-
Confidence 4578999999999999999999998776432 2222222222223333 45689999999864 0 111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++..+ ...+..|+..+... ...+.|+++|+||+|+...+....+....+....+. +++
T Consensus 93 --~~~~~~~d~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 167 (196)
T 2atv_A 93 --EGHMRWGEGFVLVYDITDRGS--FEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELAC-AFY 167 (196)
T ss_dssp --HHHHHHCSEEEEEEETTCHHH--HHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS-EEE
T ss_pred --hhhhccCCEEEEEEECcCHHH--HHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCC-eEE
Confidence 123566899999999975321 12222333322211 123589999999999975322222233334333344 599
Q ss_pred EEecCCCc-ChHHHHHHHHHhcc
Q 014461 294 MTSGLKGA-GLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~-gi~~L~~~i~~~l~ 315 (424)
++||++|. |+++++++|.+.+.
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHHH
Confidence 99999999 99999999988764
No 123
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=5.4e-20 Score=167.08 Aligned_cols=165 Identities=15% Similarity=0.119 Sum_probs=103.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++.........+.++.+.....+..++. .+.+|||+|.... ...+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~---------~~~l~ 105 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE---------NEWLH 105 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH---------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch---------hhhHH
Confidence 356899999999999999999999755432333333333322233334443 5689999996421 01111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEE
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIF 293 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+..+|++++|+|+++.. ....+..|...+... ...+.|+++|+||+|+...+....+....+....+. +++
T Consensus 106 --~~~~~~a~~~ilVydvt~~~--sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~-~~~ 180 (211)
T 2g3y_A 106 --DHCMQVGDAYLIVYSITDRA--SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC-KFI 180 (211)
T ss_dssp --HCCCCCCSEEEEEEETTCHH--HHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC-EEE
T ss_pred --HHHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC-EEE
Confidence 23457789999999997532 222333444433221 123589999999999965322222223333333344 499
Q ss_pred EEecCCCcChHHHHHHHHHhcc
Q 014461 294 MTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+|||++|.||+++|++|.+.+.
T Consensus 181 e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 181 ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 124
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=6.9e-20 Score=164.11 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=106.6
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEe-cCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMT-KADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
...+.++|+++|.+|||||||++++.+............+.......+. .....+.+|||||...+...... .
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------~ 89 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD------Y 89 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC------H
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh------c
Confidence 3446789999999999999999999885433211111222222221122 45578999999998654321100 0
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-------hhHHHHHHHHhc-
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-------KDLLKVAEQFKH- 285 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-------~~~~~~~~~~~~- 285 (424)
. ..+..+|++++|+|+++........+..++.+.... .++.|+++|+||+|+.... .......+.+..
T Consensus 90 ~---~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~ 165 (196)
T 3llu_A 90 E---MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADA 165 (196)
T ss_dssp H---HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred c---cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHh
Confidence 1 234568999999999875333444566777765221 2358999999999987632 111222344554
Q ss_pred ---CCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 286 ---LPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 286 ---~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
..+. .++++||++ .|++++|+.|.+.+
T Consensus 166 ~~~~~~~-~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 166 GLEKLHL-SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TCTTSCE-EEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhcCCc-ceEEEEech-hhHHHHHHHHHHHh
Confidence 3333 599999999 99999999998765
No 125
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.82 E-value=1.5e-20 Score=187.28 Aligned_cols=165 Identities=25% Similarity=0.303 Sum_probs=116.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc-cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT-QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~-~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
...++|+++|.+|+|||||+|+|++..+..++..+++|.+.....+...+. .+.+|||||+..+.... ...+..
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~-----~~~~~~ 106 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELG-----RLRVEK 106 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTC-----CCCHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchh-----HHHHHH
Confidence 356899999999999999999999998877788888888776666666555 89999999998653211 122455
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
+...+..+|++++|+|+ ........+..++.+. +.|+++|+||+|+...... +..+.+.+..+.. ++++
T Consensus 107 ~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~------~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~-v~~v 175 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM------EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAK-VLLV 175 (423)
T ss_dssp HHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT------TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCC-CCCC
T ss_pred HHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc------CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCC-EEEE
Confidence 56677889999999998 3344444555666554 4789999999999875433 4556676666664 9999
Q ss_pred ecCCCcChHHHHHHHHHhccCC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~~ 317 (424)
||++|.|+++++++|.+.++..
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999999544
No 126
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.3e-20 Score=165.81 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=103.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|++..+... ...++.......+..++ ..+.+|||||.......
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 89 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT-----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH-----------
Confidence 4568999999999999999999998776422 22232222222233333 46899999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA 280 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~ 280 (424)
....+..+|++++|+|+++..+... ..+...+.... ++.|+++|+||+|+...... ..+..
T Consensus 90 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 90 -RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC----PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp -GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred -HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHH
Confidence 1134677899999999975311111 12233333321 35899999999999764211 11122
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..+....+...++++||++|.|+++++++|.+.+...
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 165 RAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 3333334554699999999999999999999987543
No 127
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=166.80 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=104.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
..+.++|+++|.+|||||||+|+|++..+. .....|+..........+ ...+.+|||||...+.. +
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~ 85 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----------C 85 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----------T
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----------H
Confidence 346789999999999999999999987653 333444443332223333 35688999999865421 1
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC---CCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA---PPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~---~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
. ..+..+|++++|+|+++.. ....+..|+..+.... ..+.|+++|+||+|+...+....+....+....+.
T Consensus 86 ~---~~~~~~~~~ilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 159 (187)
T 3c5c_A 86 E---RYLNWAHAFLVVYSVDSRQ--SFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC- 159 (187)
T ss_dssp H---HHHTTCSEEEEEEETTCHH--HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC-
T ss_pred H---HHHhhCCEEEEEEECCCHH--HHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC-
Confidence 1 2356789999999997522 2223334444433211 13589999999999965333223334444444455
Q ss_pred eEEEEec-CCCcChHHHHHHHHHhcc
Q 014461 291 RIFMTSG-LKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 291 ~~~~iSA-~~g~gi~~L~~~i~~~l~ 315 (424)
.+++||| ++|.|+++++++|.+.+.
T Consensus 160 ~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 160 LFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp EEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred cEEEEeecCccccHHHHHHHHHHHHh
Confidence 5999999 899999999999988763
No 128
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=7.8e-20 Score=164.43 Aligned_cols=160 Identities=11% Similarity=0.118 Sum_probs=103.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|.+..+... ..+.++.... ..+..++ ..+.+|||||.......
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 89 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEV-YVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRL----------- 89 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSS-CCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTT-----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcc-cCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHH-----------
Confidence 3468999999999999999999998766422 1122222211 2233333 47899999997644211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCch--HHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh------------HHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPD--SRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD------------LLKVA 280 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~--~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~------------~~~~~ 280 (424)
....+..+|++++|+|+++..+... ..+...+.... ++.|+++|+||+|+...... ..+..
T Consensus 90 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 164 (201)
T 2gco_A 90 -RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC----PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEG 164 (201)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS----TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHH
T ss_pred -HHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC----CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHH
Confidence 1124678899999999975321111 12233333322 25899999999999865211 11223
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
..+....+...++++||++|.|+++++++|.+.+
T Consensus 165 ~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 165 RDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3444444554699999999999999999998865
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=1.9e-20 Score=189.61 Aligned_cols=166 Identities=23% Similarity=0.366 Sum_probs=108.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
.+...+|+++|.+|||||||+|+|++.+.+.+.+.+++|++.........+..+.+|||||+....... .......
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~----~~~~~~~ 95 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF----LAQIRQQ 95 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CC----HHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHH----HHHHHHH
Confidence 455689999999999999999999999988889999999998888788888899999999986322111 1223334
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
+...+..+|++|+|+|+..+.+..+..+.+++.. .+.|+++|+||+|+...... ..++.. .++..++++
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~------~~~pvilV~NK~D~~~~~~~----~~e~~~-lg~~~~~~i 164 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAADEEVAKILYR------TKKPVVLAVNKLDNTEMRAN----IYDFYS-LGFGEPYPI 164 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT------CCSCEEEEEECC-------------CCSGG-GSSSSEEEC
T ss_pred HHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH------cCCCEEEEEECccchhhhhh----HHHHHH-cCCCceEEe
Confidence 4456778999999999987777766666666654 24789999999998753211 111111 244457899
Q ss_pred ecCCCcChHHHHHHHHHhccC
Q 014461 296 SGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l~~ 316 (424)
||++|.|+++|++.+.+.++.
T Consensus 165 SA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGGG
T ss_pred ecccccchHHHHHHHHhhccc
Confidence 999999999999999988754
No 130
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.81 E-value=8.4e-21 Score=186.02 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=126.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce-----eecCCCC----------------------ceee-------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AVSRKTN----------------------TTTH------------- 176 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~~~~~~----------------------tt~~------------- 176 (424)
...++|+++|.+|||||||+|+|+|.++. .++..|+ +|++
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999998764 2333333 1111
Q ss_pred -----------EEEEEEecCCccEEEEeCCCcccCCCC-CChh---hhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH
Q 014461 177 -----------EVLGVMTKADTQICIFDTPGLMLNKSG-YSHK---DVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS 241 (424)
Q Consensus 177 -----------~~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~---~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~ 241 (424)
...........++.||||||+...... .+.. ....++..++. ...+++++|+|++..+...+
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiL~v~~a~~~~~~~~- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSD- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT--STTEEEEEEEETTSCGGGCH-
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc--CCCeEEEEEecCCCccchhH-
Confidence 001112223568999999998753211 0111 11222222221 44567777888865443332
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHH--hcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF--KHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 242 ~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
+..+++.+.. .+.|+++|+||+|+...........+.- ....++..++++||++|.|++++++++.+.- ++
T Consensus 186 -~~~i~~~~~~---~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e~---~~ 258 (353)
T 2x2e_A 186 -ALKVAKEVDP---QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER---KF 258 (353)
T ss_dssp -HHHHHHHHCT---TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHHH---HH
T ss_pred -HHHHHHHhCc---CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHHH---HH
Confidence 3344555442 2478999999999986433222222210 0012344678899999999999999998732 22
Q ss_pred CCCCCCcchhhHH---HHHHHHHHHHHHhhcCccCCc
Q 014461 320 SEDPLTMSEEVMK---NISLEVVRERLLDHVHQEIPY 353 (424)
Q Consensus 320 ~~~~~~~~~~~~~---~~~~e~ire~l~~~l~~eip~ 353 (424)
.++...+++...+ ....+.+|+.+++++.+++||
T Consensus 259 f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~ 295 (353)
T 2x2e_A 259 FLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPG 295 (353)
T ss_dssp HHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333333 667899999999999999999
No 131
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=5.8e-20 Score=162.72 Aligned_cols=162 Identities=14% Similarity=0.159 Sum_probs=103.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|.+..+. .....+........+.. ....+.+|||||...+...
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 71 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 71 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTT-----------
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhh-----------
Confidence 35689999999999999999999987653 22222222222222333 3356899999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~ 281 (424)
....+..+|++++|+|+++..+ ...+ ..|+..+.... ++.|+++|+||+|+.... ....+...
T Consensus 72 -~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 147 (184)
T 1m7b_A 72 -RPLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 147 (184)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred -HHhhcCCCcEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHH
Confidence 1124678899999999975321 1222 23333332211 358999999999997431 11122334
Q ss_pred HHhcCCCCCeEEEEecC-CCcChHHHHHHHHHhcc
Q 014461 282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~-~g~gi~~L~~~i~~~l~ 315 (424)
.+....+..++++|||+ +|.|++++++.|.+.+.
T Consensus 148 ~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 148 NMAKQIGAATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 44444454469999999 68999999999988753
No 132
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.81 E-value=1e-19 Score=164.98 Aligned_cols=161 Identities=15% Similarity=0.188 Sum_probs=97.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
+.++|+++|.+|||||||+++|++..+. ...+.++..... +..+ +..+.+|||||...+ ...+
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~---------~~~~- 71 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYR--DTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL---------RFQL- 71 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCC--CBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH---------HHHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--cccCCcceeeEE--EEecCCCccEEEEEECCCChhH---------HHHH-
Confidence 4689999999999999999999987754 333333332222 3343 567999999998532 1101
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc-c--CCCCCCcEEEEEecCCCCCChh--hHHHHH-HHHh----
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG-K--QAPPKQKRVLCMNKVDLVTKKK--DLLKVA-EQFK---- 284 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~-~--~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~-~~~~---- 284 (424)
....+..+|++++|+|+++ ..........++.... . ....+.|+++|+||+|+..... ...+.+ +.+.
T Consensus 72 -~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~ 149 (214)
T 2fh5_B 72 -LDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRV 149 (214)
T ss_dssp -HHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhc
Confidence 1123678999999999964 1111222333333211 0 1123589999999999976421 111111 1111
Q ss_pred ---------------c-CCC-------------CCeEEEEecCCC------cChHHHHHHHHHhc
Q 014461 285 ---------------H-LPG-------------YERIFMTSGLKG------AGLKALTQYLMEQA 314 (424)
Q Consensus 285 ---------------~-~~~-------------~~~~~~iSA~~g------~gi~~L~~~i~~~l 314 (424)
. ..+ ...+++|||++| .||++++++|.+.+
T Consensus 150 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 150 TRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred cchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 1 111 335999999999 99999999998753
No 133
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.81 E-value=1.2e-19 Score=162.30 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=99.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|.+|||||||+|+|++......+..+.++.+.....+..++. .+.+|||+|........ .
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~-----~----- 74 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL-----H----- 74 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT-----G-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH-----H-----
Confidence 45899999999999999999999644322333333333332233334443 56799999975421101 0
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+..+|++++|+|+++.. ....+..|+..+... ...+.|+++|+||+|+...+.........+....+. .+++
T Consensus 75 -~~~~~~~~~~i~v~dv~~~~--s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~-~~~e 150 (192)
T 2cjw_A 75 -DHCMQVGDAYLIVYSITDRA--SFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDX-KFIE 150 (192)
T ss_dssp -GGHHHHCSEEEEEEETTCHH--HHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEE
T ss_pred -HhhcccCCEEEEEEECCCHH--HHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCC-ceEE
Confidence 11235579999999997532 122233333322211 123579999999999965322222233334333344 5999
Q ss_pred EecCCCcChHHHHHHHHHhcc
Q 014461 295 TSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~ 315 (424)
|||++|.||+++|++|.+.+.
T Consensus 151 ~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 151 TSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp CBTTTTBSHHHHHHHHHHHHH
T ss_pred eccccCCCHHHHHHHHHHHHH
Confidence 999999999999999998774
No 134
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.80 E-value=6.9e-19 Score=155.94 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=102.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh---hhhhhHHHHH
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH---KDVKVRVESA 216 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~---~~~~~~~~~~ 216 (424)
++|+++|.+|||||||+|+|++..+. .+..+++|........ . .+.+|||||+..... ... ..........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~t~~~~~~~~--~--~~~l~Dt~G~~~~~~-~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEW--K--NHKIIDMPGFGFMMG-LPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEE--T--TEEEEECCCBSCCTT-SCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCCCCCccceeEEEec--C--CEEEEECCCcccccc-CCHHHHHHHHHHHHHH
Confidence 57999999999999999999988754 4555666655443322 2 789999999753221 111 1112222233
Q ss_pred Hhh-cccccEEEEEEeCCCCCCCchHHHH---------HHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461 217 WSA-VNLFEVLMVVFDVHRHLTSPDSRVI---------RLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (424)
Q Consensus 217 ~~~-~~~aD~vl~VvD~~~~~~~~~~~~~---------~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (424)
+.. ...++++++|+|.+.. ......+. +.+..... .+.|+++|+||+|+.... .+..+.+...
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~---~~~~~~~~~~ 148 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAA-PEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV---QEVINFLAEK 148 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHH-HHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH---HHHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhh-hhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH---HHHHHHHHHH
Confidence 333 5567788888887421 00000110 11121111 247899999999998753 2223333333
Q ss_pred CCCC------eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 287 PGYE------RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 287 ~~~~------~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.+.. .++++||++|.|+++++++|.+.+..
T Consensus 149 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 149 FEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 3332 48999999999999999999988754
No 135
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.80 E-value=1.1e-19 Score=164.31 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=103.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC--CccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA--DTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
...++|+++|.+|||||||+|+|.+..+. .....|........+..+ ...+.+|||||...+...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 92 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV----------- 92 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTT-----------
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHH-----------
Confidence 45689999999999999999999987664 222222222222223333 356899999998654211
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHH-HHHHHHhccCCCCCCcEEEEEecCCCCCCh------------hhHHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRV-IRLIERMGKQAPPKQKRVLCMNKVDLVTKK------------KDLLKVAE 281 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~------------~~~~~~~~ 281 (424)
....+..+|++++|+|+++..+ ...+ ..|+..+.... ++.|+++|+||+|+.... ....+...
T Consensus 93 -~~~~~~~~d~~ilv~D~~~~~s--~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 168 (205)
T 1gwn_A 93 -RPLSYPDSDAVLICFDISRPET--LDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGA 168 (205)
T ss_dssp -GGGGCTTCSEEEEEEETTCHHH--HHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHH
T ss_pred -HHhhccCCCEEEEEEECCCHHH--HHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHH
Confidence 1124678899999999975321 1222 23433332221 358999999999997431 11122234
Q ss_pred HHhcCCCCCeEEEEecC-CCcChHHHHHHHHHhc
Q 014461 282 QFKHLPGYERIFMTSGL-KGAGLKALTQYLMEQA 314 (424)
Q Consensus 282 ~~~~~~~~~~~~~iSA~-~g~gi~~L~~~i~~~l 314 (424)
.+....+...+++|||+ +|.|++++++.|.+.+
T Consensus 169 ~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 169 NMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 44444444469999999 6899999999998765
No 136
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.9e-19 Score=170.21 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=105.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
+.++|+++|.+|||||||+|+|.+..+.... + |.......+...+..+.+|||||...+.. ...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~--- 227 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDKIRP---------LWR--- 227 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----CC---------SHH---
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCCCHhHHH---------HHH---
Confidence 4569999999999999999999988764322 2 33344445667788999999999754421 111
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHHHHHHh-ccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERM-GKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERIF 293 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~-~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~ 293 (424)
..+..+|++|+|+|+++..+ ...+..++..+ ......+.|+++|+||+|+.... ...+....+.... ...+++
T Consensus 228 ~~~~~ad~vilV~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRER--VNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-NAAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSS--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-CHHHHHHHHTCTTCCSSCEEEE
T ss_pred HHhccCCEEEEEEECCchHH--HHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-CHHHHHHHhchhhhhcCCCEEE
Confidence 23567899999999975432 22333333332 22222358999999999998642 2333333333221 122589
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
++||++|.||++++++|.+.+..
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHTC
T ss_pred EEECCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 137
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.79 E-value=2.5e-20 Score=176.60 Aligned_cols=159 Identities=24% Similarity=0.367 Sum_probs=107.6
Q ss_pred ChhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-CC----------------CCCCCCccChhhHHHHHHhcCC
Q 014461 23 NPLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-DP----------------QNNNAAKKQEPTWDEKYRERTD 85 (424)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~~----------------k~Dl~~~~~~~~~~~~~~~~~~ 85 (424)
.+||-|||.++..|... .+..+|+++++.|||.|.++ ++ |+||++.+..+.|..++.+.+.
T Consensus 3 i~w~PGhm~ka~~~~~~--~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~ 80 (282)
T 1puj_A 3 IQWFPGHMAKARREVTE--KLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI 80 (282)
T ss_dssp ------CTTHHHHHHHH--HGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcCCchHHHHHHHHHHH--HHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCC
Confidence 36778889888888877 77889999999999999998 53 6699988888899999988888
Q ss_pred eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc
Q 014461 86 RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV 164 (424)
Q Consensus 86 ~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~ 164 (424)
.+++.++ ++.|..++ .....+++....+. ...+.......+|+++|.||||||||+|+|.+...
T Consensus 81 ~~i~iSA~~~~gi~~L----------~~~i~~~l~~~~~~-----~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 81 RSLSINSVNGQGLNQI----------VPASKEILQEKFDR-----MRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEECCTTTCTTGGGH----------HHHHHHHHHHHHHH-----HHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred cEEEEECCCcccHHHH----------HHHHHHHHHHHHHH-----HHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence 8888888 88888877 22222223222111 01122245678999999999999999999999988
Q ss_pred eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 165 AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 165 ~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
+.+++.+++|+...... . +..+.++||||+..+.
T Consensus 146 ~~~~~~~g~T~~~~~~~--~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 146 AKTGDRPGITTSQQWVK--V-GKELELLDTPGILWPK 179 (282)
T ss_dssp C------------CCEE--E-TTTEEEEECCCCCCSC
T ss_pred eecCCCCCeeeeeEEEE--e-CCCEEEEECcCcCCCC
Confidence 88999999998764322 2 4579999999998653
No 138
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.79 E-value=1.3e-18 Score=168.18 Aligned_cols=164 Identities=14% Similarity=0.152 Sum_probs=110.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCcc--EEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQ--ICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|+|||||++++++..+. .....|+.......+..++.. +.+|||||...+...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 219 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL---------- 219 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCC--CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT----------
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCC--cccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH----------
Confidence 345789999999999999999999977653 444555555554445555544 559999998654211
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHH-HHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHH
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVI-RLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVA 280 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~-~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~ 280 (424)
....+..+|++++|+|+++..+. ..+. .|+..+.... ++.|+++|+||+|+..... ......
T Consensus 220 --~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 220 --RPLSYPQTDVFLICFSLVSPASF--HHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHH--HHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred --HHHhccCCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence 11346789999999999753221 1221 2333322211 2589999999999965421 112233
Q ss_pred HHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 281 EQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 281 ~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
..+....+..++++|||++|.|+++++++|.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 295 LAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 444545566569999999999999999999987743
No 139
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=8.8e-19 Score=168.31 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=117.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
...+|+++|.+|||||||+|++++.....++..+++|.....+.+.. ++..+.+|||||...+. ... .....
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~--~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFM-----ENY--FTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHH-----HHH--HTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHh-----hhh--hhhHH
Confidence 35799999999999999999999875555666778887776666553 56789999999976430 000 00111
Q ss_pred HhhcccccEEEEEEeCCCCCCCchH-HHHHHHHHhccCCCCCCcEEEEEecCCCCC--Chh----hHHHHHHHHhcCCCC
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDS-RVIRLIERMGKQAPPKQKRVLCMNKVDLVT--KKK----DLLKVAEQFKHLPGY 289 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~-~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~--~~~----~~~~~~~~~~~~~~~ 289 (424)
...+..+|++++|+|+++..+.... .+..++..+... .++.|+++|+||+|+.. .+. ......+.+....++
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~-~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY-SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 2335678999999999764322221 334445544322 23589999999999987 222 333556667777774
Q ss_pred --CeEEEEecCCCcChHHHHHHHHHhc
Q 014461 290 --ERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 290 --~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.+++++||++ .|+.+++..+...+
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 5799999999 88999998888765
No 140
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.65 E-value=1.2e-20 Score=170.06 Aligned_cols=162 Identities=13% Similarity=0.143 Sum_probs=103.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec--CCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK--ADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~--~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+++|++..+. .....++.......+.. ....+.+|||||...+..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------------ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR------------ 93 (204)
Confidence 35689999999999999999999976653 23333333332222223 334567999999764321
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh------------hHHHHHHH
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK------------DLLKVAEQ 282 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~~~~~ 282 (424)
.....+..+|++++|+|+++..+.... ...|+..+.... ++.|+++|+||+|+..... ...+....
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~-~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENV-RAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 111235678999999999764332221 113333332221 2578999999999976421 11122333
Q ss_pred HhcCCCCCeEEEEecCCCcChHHHHHHHHHhc
Q 014461 283 FKHLPGYERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 283 ~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
+....+..++++|||++|.|+++++++|.+.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 44444553589999999999999999987654
No 141
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=2.3e-18 Score=176.37 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=110.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.+.++|+++|.+|||||||+|+|++..+... . .|.......+...+..+.+|||||...+.. . .
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~--~--~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~------~ 383 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT--I--PTVGFNVETVTYKNVKFNVWDVGGQDKIRP------L------W 383 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC--C--CCSSEEEEEEESSSCEEEEEEECCCGGGSG------G------G
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCc--C--CccceeEEEEEeCCEEEEEEECCCcHHHHH------H------H
Confidence 3568999999999999999999998775422 2 244445555677888999999999765421 0 2
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhcc-CCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCC---CCCeE
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGK-QAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLP---GYERI 292 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~-~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~---~~~~~ 292 (424)
...+..+|++|+|+|+++.. ....+..++..+.. ....+.|+++|+||+|+.... ...+....+.... ....+
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~--s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 460 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRD--RIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-KPHEIQEKLGLTRIRDRNWYV 460 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGG--GHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-CHHHHHHHTTCTTCCSSCEEE
T ss_pred HHHhccCCEEEEEEECcchh--HHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-CHHHHHHHhchhhhhcCCeEE
Confidence 24567899999999997632 23334444444322 112358999999999997642 2223333332111 12259
Q ss_pred EEEecCCCcChHHHHHHHHHhccCC
Q 014461 293 FMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
++|||++|.||++++++|.+.+...
T Consensus 461 ~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 461 QPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp EECBTTTTBTHHHHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988654
No 142
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=1.2e-18 Score=154.43 Aligned_cols=165 Identities=13% Similarity=0.211 Sum_probs=100.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCce-eeEEEEEEe-----cCCccEEEEeCCCcccCCCCCChhhhhhH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTT-THEVLGVMT-----KADTQICIFDTPGLMLNKSGYSHKDVKVR 212 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt-~~~~~~~~~-----~~~~~i~l~DtpG~~~~~~~~~~~~~~~~ 212 (424)
.++|+++|.+|||||||+|+|.+......+....|. .+.....+. .....+.+|||||...+...
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~--------- 72 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST--------- 72 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT---------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh---------
Confidence 368999999999999999999985322122222221 121111111 23567899999997643211
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhH---HHHHHHHhcCCCC
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDL---LKVAEQFKHLPGY 289 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~---~~~~~~~~~~~~~ 289 (424)
.. ..+..+|++++|+|.+++.. ....+..|+.++.... ++.|+++|+||+|+....... ....+.+....++
T Consensus 73 ~~---~~~~~~~~~i~v~d~~~~~~-s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T 2zej_A 73 HP---HFMTQRALYLAVYDLSKGQA-EVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGF 147 (184)
T ss_dssp SH---HHHHHSEEEEEEEEGGGCHH-HHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTS
T ss_pred hH---HHccCCcEEEEEEeCCcchh-HHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCC
Confidence 11 12456799999999975311 1223445555443221 358999999999997642211 2334556655566
Q ss_pred C---eEEEEecCCCc-ChHHHHHHHHHhccCC
Q 014461 290 E---RIFMTSGLKGA-GLKALTQYLMEQAVQR 317 (424)
Q Consensus 290 ~---~~~~iSA~~g~-gi~~L~~~i~~~l~~~ 317 (424)
. .++++||++|. |+++|++.|.+.+...
T Consensus 148 ~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 148 PAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred cchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 4 48999999996 9999999999887643
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.77 E-value=8.6e-19 Score=179.63 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=82.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcce---------------eec------CCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVS------RKTNTTTHEVLGVMTKADTQICIFDTPG 196 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~------~~~~tt~~~~~~~~~~~~~~i~l~DtpG 196 (424)
+..+|+++|++|+|||||+|+|++.... .+. ...+.|.......+.+.+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 5689999999999999999999621100 011 1133444444445667889999999999
Q ss_pred cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
+.++. ..+...+..+|++|+|+|++++.......++..+... +.|+++|+||+|+...
T Consensus 92 ~~df~------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~------~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFT------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR------HTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT------TCCEEEEEECTTSCCS
T ss_pred chhHH------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCEEEEEeCCCCccc
Confidence 87542 2244567789999999999887665555555444432 4789999999999753
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=5.3e-18 Score=170.62 Aligned_cols=154 Identities=21% Similarity=0.228 Sum_probs=103.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee------------------------------ecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA------------------------------VSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~------------------------------~~~~~~tt~~~~~~~~~~~~ 186 (424)
....+|+++|++|+|||||+|+|++..... .....++|.+.....+...+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456899999999999999999996532111 11224667776666677788
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (424)
.++.+|||||+..+ ...+...+..+|++++|+|++++.. .........+... +.|
T Consensus 95 ~~~~iiDTPGh~~f------------~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~------~v~ 156 (439)
T 3j2k_7 95 KHFTILDAPGHKSF------------VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA------GVK 156 (439)
T ss_pred eEEEEEECCChHHH------------HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc------CCC
Confidence 89999999997543 3344455678999999999987643 2233333334433 255
Q ss_pred -EEEEEecCCCCCC---hh---hHHHHHHHHhcCCCC-----CeEEEEecCCCcChHHHHH
Q 014461 260 -RVLCMNKVDLVTK---KK---DLLKVAEQFKHLPGY-----ERIFMTSGLKGAGLKALTQ 308 (424)
Q Consensus 260 -~ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~-----~~~~~iSA~~g~gi~~L~~ 308 (424)
+++|+||+|+... .. .+.+....+....++ .+++++||++|.|++++.+
T Consensus 157 ~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 157 HLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred eEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 8999999999642 11 122222333333333 3599999999999999654
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.77 E-value=1.9e-18 Score=172.30 Aligned_cols=164 Identities=19% Similarity=0.249 Sum_probs=104.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEE------EEE--------E-----ecCCccEEEEeCCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEV------LGV--------M-----TKADTQICIFDTPG 196 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~------~~~--------~-----~~~~~~i~l~DtpG 196 (424)
....++|+++|++|+|||||+|+|++...........++.... ... . ......+.+|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4567899999999999999999999853321111111110000 000 0 00115789999999
Q ss_pred cccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhh
Q 014461 197 LMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKD 275 (424)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~ 275 (424)
+..+ .......+..+|++++|+|++++. ..........+...+ ..|+++|+||+|+.+.. .
T Consensus 85 h~~~------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-----~~~iivviNK~Dl~~~~-~ 146 (403)
T 3sjy_A 85 HEVL------------MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-----VKNLIIVQNKVDVVSKE-E 146 (403)
T ss_dssp CGGG------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGGSCHH-H
T ss_pred cHHH------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-----CCCEEEEEECccccchH-H
Confidence 7533 334445667899999999998765 222334444555443 24799999999998742 2
Q ss_pred HHHHH---HHHhcCCC--CCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 276 LLKVA---EQFKHLPG--YERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 276 ~~~~~---~~~~~~~~--~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..... ..+....+ ..+++++||++|.|+++|+++|.+.++..
T Consensus 147 ~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 147 ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 22222 22222211 23599999999999999999999987543
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.76 E-value=1.6e-18 Score=176.28 Aligned_cols=161 Identities=16% Similarity=0.274 Sum_probs=107.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCc----c--eeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhh
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK----V--AAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDV 209 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~----~--~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~ 209 (424)
.++.++|+++|++|+|||||+|+|++.. . ...+...++|.+.....+..++..+.+|||||+..+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~--------- 86 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL--------- 86 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH---------
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH---------
Confidence 3567899999999999999999999866 1 112334455555443345557789999999997432
Q ss_pred hhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH---HHHHHHhcC
Q 014461 210 KVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL---KVAEQFKHL 286 (424)
Q Consensus 210 ~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~---~~~~~~~~~ 286 (424)
.......+..+|++++|+|++++........+.++... +.|.++|+||+|+.+. .... +.+..+...
T Consensus 87 ---~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~ip~IvviNK~Dl~~~-~~~~~~~~~l~~~l~~ 156 (482)
T 1wb1_A 87 ---IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF------NIPIIVVITKSDNAGT-EEIKRTEMIMKSILQS 156 (482)
T ss_dssp ---HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT------TCCBCEEEECTTSSCH-HHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc------CCCEEEEEECCCcccc-hhHHHHHHHHHHHHhh
Confidence 34445567889999999999876655444555555543 3678999999999863 2222 222222221
Q ss_pred C-C--CCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 287 P-G--YERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 287 ~-~--~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
. + ..+++++||++|.|+++|+++|.+.++
T Consensus 157 ~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 157 THNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 1 1 235999999999999999999998764
No 147
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.76 E-value=7.4e-20 Score=185.15 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=95.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc--ce----------------------eecC------CCCceeeEEEEEEecCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VA----------------------AVSR------KTNTTTHEVLGVMTKADT 187 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~--~~----------------------~~~~------~~~tt~~~~~~~~~~~~~ 187 (424)
..++|+++|++|+|||||+|+|++.. +. .+.+ ..+.|.+.....+...+.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999998531 10 0001 134555444444566778
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC-------chHHHHHHHHHhccCCCCCCc-
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS-------PDSRVIRLIERMGKQAPPKQK- 259 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~-------~~~~~~~~l~~~~~~~~~~~p- 259 (424)
++.+|||||+..+ .......+..+|++++|+|++++... ........+... +.|
T Consensus 86 ~~~iiDtPGh~~f------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~------~v~~ 147 (458)
T 1f60_A 86 QVTVIDAPGHRDF------------IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL------GVRQ 147 (458)
T ss_dssp EEEEEECCCCTTH------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT------TCCE
T ss_pred eEEEEECCCcHHH------------HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc------CCCe
Confidence 8999999997532 33455667899999999999753211 122222233322 244
Q ss_pred EEEEEecCCCCCC-hhhH---HHHHHHHhcCCCC----CeEEEEecCCCcChHH
Q 014461 260 RVLCMNKVDLVTK-KKDL---LKVAEQFKHLPGY----ERIFMTSGLKGAGLKA 305 (424)
Q Consensus 260 ~ilV~NK~Dl~~~-~~~~---~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~ 305 (424)
+++|+||+|+... ...+ .+.+..+....++ .+++++||++|.|+++
T Consensus 148 iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 148 LIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred EEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence 8999999999842 2222 2223333222332 3699999999999874
No 148
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=170.43 Aligned_cols=189 Identities=15% Similarity=0.233 Sum_probs=113.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCcee-------------------------eEEEEE----
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTTT-------------------------HEVLGV---- 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt~-------------------------~~~~~~---- 181 (424)
.....|+++|+||||||||+|+|++ .++......+++.. ....+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 4478999999999999999999986 33333333332221 000000
Q ss_pred ----------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhc
Q 014461 182 ----------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMG 251 (424)
Q Consensus 182 ----------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~ 251 (424)
+...+.++.++||||+..+. ......+|++++|+|++.+... ..+.. .+.
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~---------------~~l~~~~d~vl~V~d~~~~~~~--~~i~~---~il 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE---------------FAVADMVDMFVLLLPPAGGDEL--QGIKR---GII 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH---------------HHHHTTCSEEEEEECCC-----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh---------------hhHHhhCCEEEEEEcCCcchhH--HHhHH---HHH
Confidence 11356789999999975320 0113568999999999653211 11111 111
Q ss_pred cCCCCCCcEEEEEecCCCCCChhhHHHHHHHH----hcCC-----CCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC
Q 014461 252 KQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQF----KHLP-----GYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED 322 (424)
Q Consensus 252 ~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~----~~~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~ 322 (424)
..|.++|+||+|+... .........+ .... ..++++++||++|.|+++|+++|.+.+.. .++
T Consensus 212 -----~~~~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~---~~~ 282 (349)
T 2www_A 212 -----EMADLVAVTKSDGDLI-VPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL---MLA 282 (349)
T ss_dssp -----CSCSEEEECCCSGGGH-HHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH---HHH
T ss_pred -----hcCCEEEEeeecCCCc-hhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH---Hhh
Confidence 2578999999999742 1111112222 2111 13468999999999999999999987743 122
Q ss_pred CCCcchh---hHHHHHHHHHHHHHHhhcCccCCcc
Q 014461 323 PLTMSEE---VMKNISLEVVRERLLDHVHQEIPYS 354 (424)
Q Consensus 323 ~~~~~~~---~~~~~~~e~ire~l~~~l~~eip~~ 354 (424)
...+++. ...+++.+.++++++..+.+++|+.
T Consensus 283 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (349)
T 2www_A 283 SGELTAKRRKQQKVWMWNLIQESVLEHFRTHPTVR 317 (349)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh
Confidence 2333333 4556678999999999888888764
No 149
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=154.47 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=105.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCC--CceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT--NTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~--~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....++|+++|.+|||||||+|+|++..... +..+ ++|...........+..+.+|||||+..... ........+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~--~~~~~~~~~ 102 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFH-SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEV--PNAETSKEI 102 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSC-C-------CCSCEEEEEEETTEEEEEEECCSCC-------CHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCc-cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCC--CHHHHHHHH
Confidence 3457899999999999999999999987743 3333 5666666666777888999999999875431 111122222
Q ss_pred H-HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH-------HHHHHHhc
Q 014461 214 E-SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL-------KVAEQFKH 285 (424)
Q Consensus 214 ~-~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~-------~~~~~~~~ 285 (424)
. ........+|++|+|+|+++ .+..+..+..++.+..... ...|+++|+||+|+.... .+. +.++.+.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~-~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDT-NLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcc-cHHHHHHhchHHHHHHHH
Confidence 2 23334567899999999963 4444444444443221110 125899999999987642 111 12233333
Q ss_pred CCCCCeEEEEecCCC-----cChHHHHHHHHHhccC
Q 014461 286 LPGYERIFMTSGLKG-----AGLKALTQYLMEQAVQ 316 (424)
Q Consensus 286 ~~~~~~~~~iSA~~g-----~gi~~L~~~i~~~l~~ 316 (424)
..+.. ++.+++..+ .|+.+|++.+.+.+..
T Consensus 180 ~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 33333 667766643 6899999999887754
No 150
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.74 E-value=2.5e-17 Score=164.56 Aligned_cols=165 Identities=16% Similarity=0.277 Sum_probs=106.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCccee--ecCCCCceeeEEEEEEec------------------C-----CccEE
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAA--VSRKTNTTTHEVLGVMTK------------------A-----DTQIC 190 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~--~~~~~~tt~~~~~~~~~~------------------~-----~~~i~ 190 (424)
....++|+++|++|+|||||+++|++..... .....+.|.......... + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 3456899999999999999999999753221 112234444322111111 0 15799
Q ss_pred EEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCC
Q 014461 191 IFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (424)
Q Consensus 191 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl 269 (424)
+|||||+..+ .......+..+|++++|+|++++. .......+..+..++ ..|+++|+||+|+
T Consensus 87 iiDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~-----~~~iivviNK~Dl 149 (410)
T 1kk1_A 87 FIDAPGHEAL------------MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG-----QKNIIIAQNKIEL 149 (410)
T ss_dssp EEECSSHHHH------------HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-----CCCEEEEEECGGG
T ss_pred EEECCChHHH------------HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC-----CCcEEEEEECccC
Confidence 9999997432 334455677889999999998764 223333334444443 2479999999999
Q ss_pred CCChh--hHHHHHHHHhcC--CCCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 270 VTKKK--DLLKVAEQFKHL--PGYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 270 ~~~~~--~~~~~~~~~~~~--~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..... ...+.+..+... ....+++++||++|.|+++|+++|.+.++..
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 87421 112222333322 1223699999999999999999999987643
No 151
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=6.6e-17 Score=145.87 Aligned_cols=174 Identities=20% Similarity=0.210 Sum_probs=103.4
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCc-ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCC-hhhhhhHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTK-VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYS-HKDVKVRV 213 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~-~~~~~~~~ 213 (424)
...+.+|+++|++|||||||+|+|++.. ...+.+.+++|..... +...+ .+.+|||||+........ .......+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEEET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEecC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 3467899999999999999999999876 3444566666654322 22223 788999999864211000 01111222
Q ss_pred HHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCC-CC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPG-YE 290 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~-~~ 290 (424)
...+.....+|.+++++|++.+....+..+..++... +.|+++|.||+|+....+ ........+....+ ..
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS------NIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc------CCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3333334678999999999876544334455555543 378999999999976421 11222333332222 34
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccCCC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
.++++||+++.|+++++++|.+.+..++
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred ceEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 5899999999999999999998876543
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.73 E-value=7.2e-18 Score=168.18 Aligned_cols=162 Identities=18% Similarity=0.170 Sum_probs=109.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC--------cceee--c------CCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT--------KVAAV--S------RKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~--------~~~~~--~------~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
...++|+++|++|+|||||+|+|++. .+... . ...+.|.......+...+..+.+|||||+..+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45689999999999999999999873 11000 0 12344555444445666789999999998643
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~--- 276 (424)
.......+..+|++++|+|++++.......++..+... +.| +++|+||+|+.......
T Consensus 89 ------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~------~ip~iivviNK~Dl~~~~~~~~~~ 150 (405)
T 2c78_A 89 ------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV------GVPYIVVFMNKVDMVDDPELLDLV 150 (405)
T ss_dssp ------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT------TCCCEEEEEECGGGCCCHHHHHHH
T ss_pred ------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEEEECccccCcHHHHHHH
Confidence 23344556789999999999876554444444444443 367 88999999998532222
Q ss_pred HHHHHHHhcCCCC----CeEEEEecCCCcC------------------hHHHHHHHHHhccC
Q 014461 277 LKVAEQFKHLPGY----ERIFMTSGLKGAG------------------LKALTQYLMEQAVQ 316 (424)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~iSA~~g~g------------------i~~L~~~i~~~l~~ 316 (424)
......+....++ .+++++||++|.| +++|++.|.+.++.
T Consensus 151 ~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 151 EMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2223333333332 4699999999987 88999999888764
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.73 E-value=5.7e-17 Score=161.78 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=98.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEec---------------C--------CccEEE
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTK---------------A--------DTQICI 191 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~---------------~--------~~~i~l 191 (424)
...++|+++|++++|||||+++|++...... ...++.|.......... . ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3568999999999999999999997542211 11233344322111100 1 157999
Q ss_pred EeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-CCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 192 FDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-TSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 192 ~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
|||||+..+ .......+..+|++++|+|++++. .......+..+..++ ..|+++|+||+|+.
T Consensus 86 iDtPGh~~f------------~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~-----~~~iivv~NK~Dl~ 148 (408)
T 1s0u_A 86 VDSPGHETL------------MATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG-----IDKIIIVQNKIDLV 148 (408)
T ss_dssp EECSSHHHH------------HHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT-----CCCEEEEEECTTSS
T ss_pred EECCCHHHH------------HHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC-----CCeEEEEEEccCCC
Confidence 999997432 334455677889999999998764 222233333444332 24799999999997
Q ss_pred CChh--hHHHHHHHHhcCC--CCCeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 271 TKKK--DLLKVAEQFKHLP--GYERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 271 ~~~~--~~~~~~~~~~~~~--~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
.... ...+.+..+.... ...+++++||++|.|+++|+++|.+.++..
T Consensus 149 ~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 149 DEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp CTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 6432 2222333333321 223599999999999999999999987643
No 154
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.73 E-value=1.9e-17 Score=156.47 Aligned_cols=169 Identities=15% Similarity=0.187 Sum_probs=89.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecC-------CCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCC-Chh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR-------KTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGY-SHK 207 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~-------~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~-~~~ 207 (424)
..++|+++|.+|+|||||+|+|++........ .+.++.......+..++. .+.+|||||+....... ...
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 35899999999999999999999877654332 222233333333444443 79999999986542211 111
Q ss_pred hhh----hHHHHHHhh----------cccccEEEEEEeCCC-CCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 208 DVK----VRVESAWSA----------VNLFEVLMVVFDVHR-HLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 208 ~~~----~~~~~~~~~----------~~~aD~vl~VvD~~~-~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
.+. ..+..++.. -..+|+++++++.+. +....+..+. +.+.. +.|+++|+||+|+...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l---~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM---KRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHH---HHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHH---HHHhc----cCCEEEEEeccCCCCH
Confidence 111 111222221 123678999997654 3444343443 43332 4789999999999764
Q ss_pred hhhHHHH----HHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 273 KKDLLKV----AEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 273 ~~~~~~~----~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
...... .+.+. ..+.. ++++||++|.|+++++++|.+.++.
T Consensus 160 -~e~~~~~~~i~~~l~-~~~i~-v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 160 -EECQQFKKQIMKEIQ-EHKIK-IYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp -HHHHHHHHHHHHHHH-HTTCC-CCCC-----------CHHHHHTCSE
T ss_pred -HHHHHHHHHHHHHHH-HcCCe-EEcCCCCCChhHHHHHHHHhcCCCc
Confidence 223222 22222 23443 8889999999999999999988754
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.73 E-value=5.4e-19 Score=180.54 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=109.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec-CCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK-ADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
++.++|+++|++|+|||||+|+|.+..+.. ...+++|.+.....+.. .+..+.||||||+..+....
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~-~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~----------- 69 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAA-MEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR----------- 69 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHH-SSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccc-ccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH-----------
Confidence 356889999999999999999999877653 34555665543333333 56689999999986553211
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHHHh---cCC-CCC
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQFK---HLP-GYE 290 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~~---~~~-~~~ 290 (424)
...+..+|++++|+|++++........+..+... +.|+++|+||+|+.... .........+. ..+ +..
T Consensus 70 -~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~------~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~ 142 (537)
T 3izy_P 70 -ARGTQVTDIVILVVAADDGVMKQTVESIQHAKDA------HVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDV 142 (537)
T ss_dssp -BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT------TCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSE
T ss_pred -HHHHccCCEEEEEEECCCCccHHHHHHHHHHHHc------CCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCc
Confidence 1345778999999999876554444444444332 47899999999997532 11111122221 111 223
Q ss_pred eEEEEecCCCcChHHHHHHHHHhccC
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+++++||++|.|+++|+++|...+..
T Consensus 143 ~iv~vSAktG~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 143 QAVHVSALTGENMMALAEATIALAEM 168 (537)
T ss_dssp EECCCCSSSSCSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCchhHHHHHHHhhhc
Confidence 69999999999999999999987653
No 156
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.73 E-value=2.4e-17 Score=147.77 Aligned_cols=161 Identities=18% Similarity=0.199 Sum_probs=103.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
.++|+++|++|||||||+++|.+..+..... +..+.....+.+..++ ..+.+|||||....... ..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~---------~~-- 72 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI---------TS-- 72 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCC---------CH--
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCchhhhhh---------hH--
Confidence 5789999999999999999999876643222 2222222333344444 35678999997654211 11
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iS 296 (424)
..+..+|++++|+|+++..+ ...+..|+..+........|+++|+||+|+.............+....+. .++.+|
T Consensus 73 -~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~~d~S 148 (199)
T 2f9l_A 73 -AYYRGAVGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL-SFIETS 148 (199)
T ss_dssp -HHHTTCSEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC-EEEECC
T ss_pred -HHHhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC-eEEEEe
Confidence 12346799999999965322 12223344333222223578999999999965322222334445544555 489999
Q ss_pred cCCCcChHHHHHHHHHhcc
Q 014461 297 GLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~l~ 315 (424)
|+++.|+++++++|.+.+.
T Consensus 149 al~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-17 Score=174.17 Aligned_cols=153 Identities=17% Similarity=0.225 Sum_probs=102.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecC------------------------------CCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------------------------------KTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~------------------------------~~~tt~~~~~~~~~~~~ 186 (424)
...++|+++|++|+|||||+|+|++........ ..++|.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998753321111 14666666555667788
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p 259 (424)
.++.||||||+..+ ...+...+..+|++|+|+|++.+ ...........+...+ ..|
T Consensus 245 ~~~~iiDTPG~e~f------------~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg-----i~~ 307 (611)
T 3izq_1 245 ANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHN 307 (611)
T ss_dssp CEEEEEECCSSSCH------------HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT-----CCE
T ss_pred ceEEEEECCCCccc------------HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcC-----CCe
Confidence 89999999998542 45556678899999999999753 1222223333333322 245
Q ss_pred EEEEEecCCCCCChh-hH---HHHHHHHhcCCC----CCeEEEEecCCCcChHHH
Q 014461 260 RVLCMNKVDLVTKKK-DL---LKVAEQFKHLPG----YERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~~-~~---~~~~~~~~~~~~----~~~~~~iSA~~g~gi~~L 306 (424)
+|+|+||+|+..... .. ...+..+....+ ..++++|||++|.|++++
T Consensus 308 iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 308 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999999999986321 11 222222222122 236999999999999865
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.73 E-value=3.1e-17 Score=161.16 Aligned_cols=145 Identities=15% Similarity=0.173 Sum_probs=103.6
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
+|+++|++|+|||||+++|+ ..+.|.+.....+...+.++.+|||||+.++ .......+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f------------~~~~~~~~ 81 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT------------LKSLITAL 81 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC------------HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH------------HHHHHHHH
Confidence 89999999999999999998 2234444444456677888999999998653 23334456
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEe-cCCCCCChhhHH---HHHHHHhcCCC--CCeEE
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMN-KVDLVTKKKDLL---KVAEQFKHLPG--YERIF 293 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~N-K~Dl~~~~~~~~---~~~~~~~~~~~--~~~~~ 293 (424)
..+|++++|+| +.+...........+...+ .|. ++|+| |+|+ .. .... +.++.+....+ ..+++
T Consensus 82 ~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~------i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii 152 (370)
T 2elf_A 82 NISDIAVLCIP-PQGLDAHTGECIIALDLLG------FKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECI 152 (370)
T ss_dssp HTCSEEEEEEC-TTCCCHHHHHHHHHHHHTT------CCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEE
T ss_pred HHCCEEEEEEc-CCCCcHHHHHHHHHHHHcC------CCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEE
Confidence 78999999999 7665544444545555443 566 89999 9999 43 2222 23334433332 24699
Q ss_pred E--EecCC---CcChHHHHHHHHHhcc
Q 014461 294 M--TSGLK---GAGLKALTQYLMEQAV 315 (424)
Q Consensus 294 ~--iSA~~---g~gi~~L~~~i~~~l~ 315 (424)
+ +||++ |.|+++|++.|.+.++
T Consensus 153 ~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 153 SLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp ECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred ecccccccCcCCCCHHHHHHHHHhhcc
Confidence 9 99999 9999999999998774
No 159
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.73 E-value=2.3e-17 Score=171.00 Aligned_cols=160 Identities=19% Similarity=0.202 Sum_probs=99.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEEecC-----CccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVMTKA-----DTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~~~~-----~~~i~l~DtpG~~ 198 (424)
+..+|+++|++|+|||||+++|+...... +.+ ..+.|.......+.+. +..+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35789999999999999999998522110 001 1233332222222221 3578999999986
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 278 (424)
++. ..+. ..+..+|++++|+|++++........+...... +.|+++|+||+|+.... ...
T Consensus 83 dF~---------~ev~---~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~------~ipiIvViNKiDl~~a~--~~~ 142 (599)
T 3cb4_D 83 DFS---------YEVS---RSLAACEGALLVVDAGQGVEAQTLANCYTAMEM------DLEVVPVLNKIDLPAAD--PER 142 (599)
T ss_dssp GGH---------HHHH---HHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT------TCEEEEEEECTTSTTCC--HHH
T ss_pred HHH---------HHHH---HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEeeeccCccccc--HHH
Confidence 541 2222 345678999999999887665544333333222 47899999999998642 333
Q ss_pred HHHHHhcCCCC--CeEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 279 VAEQFKHLPGY--ERIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 279 ~~~~~~~~~~~--~~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..+++.+..+. .+++++||++|.|+++|+++|.+.++..
T Consensus 143 v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 143 VAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 34444443343 2589999999999999999999998653
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.73 E-value=2.1e-17 Score=170.92 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=102.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCccee--------ecC------CCCceeeEEEEEEec---C--CccEEEEeCCCcc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAA--------VSR------KTNTTTHEVLGVMTK---A--DTQICIFDTPGLM 198 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~--------~~~------~~~tt~~~~~~~~~~---~--~~~i~l~DtpG~~ 198 (424)
+..+|+++|++|+|||||+++|+...... +.+ ..+.|.......+.+ + ...+.||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 46789999999999999999997521110 001 112222211111211 2 2578899999987
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHH
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLK 278 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 278 (424)
++. ..+. ..+..+|++++|+|++++........+...... +.|+++|+||+|+... ....
T Consensus 85 dF~---------~ev~---r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~------~ipiIvviNKiDl~~a--~~~~ 144 (600)
T 2ywe_A 85 DFS---------YEVS---RALAACEGALLLIDASQGIEAQTVANFWKAVEQ------DLVIIPVINKIDLPSA--DVDR 144 (600)
T ss_dssp GGH---------HHHH---HHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT------TCEEEEEEECTTSTTC--CHHH
T ss_pred hHH---------HHHH---HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC------CCCEEEEEeccCcccc--CHHH
Confidence 541 2222 335678999999999877654433333222222 4789999999999864 2344
Q ss_pred HHHHHhcCCCCC--eEEEEecCCCcChHHHHHHHHHhccCC
Q 014461 279 VAEQFKHLPGYE--RIFMTSGLKGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 279 ~~~~~~~~~~~~--~~~~iSA~~g~gi~~L~~~i~~~l~~~ 317 (424)
..+++.+..++. +++++||++|.|+++|+++|.+.++..
T Consensus 145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 455666655553 589999999999999999999998653
No 161
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.73 E-value=2.3e-17 Score=164.09 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=108.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcc-------e--------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKV-------A--------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKS 202 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~-------~--------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~ 202 (424)
..++|+++|++|+|||||+++|++... . ......+.|.......+...+..+.+|||||+..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY-- 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHH--
Confidence 357899999999999999999986311 0 00112345555444445556788999999997532
Q ss_pred CCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhh---HHH
Q 014461 203 GYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKD---LLK 278 (424)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~---~~~ 278 (424)
.......+..+|++++|+|++++........+..+... +.| +++|+||+|+...... ..+
T Consensus 80 ----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~------~vp~iivviNK~Dl~~~~~~~~~~~~ 143 (397)
T 1d2e_A 80 ----------VKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI------GVEHVVVYVNKADAVQDSEMVELVEL 143 (397)
T ss_dssp ----------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred ----------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCeEEEEEECcccCCCHHHHHHHHH
Confidence 23444567889999999999876544444444444443 367 6899999999853222 122
Q ss_pred HHHHHhcCCCC----CeEEEEecCCCcC----------hHHHHHHHHHhccC
Q 014461 279 VAEQFKHLPGY----ERIFMTSGLKGAG----------LKALTQYLMEQAVQ 316 (424)
Q Consensus 279 ~~~~~~~~~~~----~~~~~iSA~~g~g----------i~~L~~~i~~~l~~ 316 (424)
....+....++ .+++++||++|.| +++|++.|.+.++.
T Consensus 144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 23333333332 3699999999775 89999999998864
No 162
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.72 E-value=4.7e-17 Score=168.04 Aligned_cols=163 Identities=18% Similarity=0.236 Sum_probs=99.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEE-------Ee----cCCccEEEEeCCCcccCCCCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGV-------MT----KADTQICIFDTPGLMLNKSGY 204 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~-------~~----~~~~~i~l~DtpG~~~~~~~~ 204 (424)
.....+|+++|.+|||||||+|+|++..+. .....|........ +. ..+..+.+|||||........
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 456799999999999999999999987753 11112211111111 11 125679999999975443211
Q ss_pred ChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHh
Q 014461 205 SHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFK 284 (424)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~ 284 (424)
. ..+..+|++++|+|+++. .....+...+.... ++.|+++|+||+|+........+..+.+.
T Consensus 116 ---------~---~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~----~~~pvilV~NK~Dl~~~~~v~~~~~~~~~ 177 (535)
T 3dpu_A 116 ---------Q---FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYG----GKSPVIVVMNKIDENPSYNIEQKKINERF 177 (535)
T ss_dssp ---------H---HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHS----SSCCEEEEECCTTTCTTCCCCHHHHHHHC
T ss_pred ---------H---HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhC----CCCCEEEEEECCCcccccccCHHHHHHHH
Confidence 0 124568999999999642 22334444455443 24799999999999765432233344444
Q ss_pred cCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCC
Q 014461 285 HLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPW 319 (424)
Q Consensus 285 ~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~ 319 (424)
...+.. ++++||++|.|+++|+++|.+.+...+.
T Consensus 178 ~~~~~~-~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 178 PAIENR-FHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp GGGTTC-EEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred HhcCCc-eEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 444443 9999999999999999999999876553
No 163
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=2.9e-17 Score=167.43 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=98.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc------------------------------eeecCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV------------------------------AAVSRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~------------------------------~~~~~~~~tt~~~~~~~~~~~~ 186 (424)
...++|+++|.+|+|||||+|+|++... .......+.|.+.....+...+
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 4578999999999999999999975411 0112223556665555567778
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (424)
.++.||||||+..+ .......+..+|++|+|+|++++.. .........+...+ ..|
T Consensus 111 ~~~~iiDTPG~~~f------------~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-----~~~ 173 (483)
T 3p26_A 111 ANFTIVDAPGHRDF------------VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-----IHN 173 (483)
T ss_dssp CEEEEECCCCCGGG------------HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT-----CCC
T ss_pred ceEEEEECCCcHHH------------HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC-----CCc
Confidence 89999999998643 3444556788999999999986522 22223333343332 246
Q ss_pred EEEEEecCCCCCChh-hHH---HHHHHHhcCCC----CCeEEEEecCCCcChHHH
Q 014461 260 RVLCMNKVDLVTKKK-DLL---KVAEQFKHLPG----YERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~~-~~~---~~~~~~~~~~~----~~~~~~iSA~~g~gi~~L 306 (424)
+++|+||+|+..... ... +.+..+....+ ..+++++||++|.|++++
T Consensus 174 iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 174 LIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred EEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 999999999986322 222 22222221112 236899999999999864
No 164
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.71 E-value=1.6e-18 Score=180.30 Aligned_cols=161 Identities=18% Similarity=0.233 Sum_probs=88.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee------------------------------cCCCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV------------------------------SRKTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~------------------------------~~~~~tt~~~~~~~~~~~~ 186 (424)
...++|+++|++|+|||||+|+|++...... ...+++|.+.....+...+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 3457899999999999999999975321111 1134667666655566677
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC-------CCchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL-------TSPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~-------~~~~~~~~~~l~~~~~~~~~~~p 259 (424)
..+.||||||+..+... ....+..+|++|+|+|++.+. ..........+...+ .|
T Consensus 255 ~~i~iiDTPGh~~f~~~------------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lg------ip 316 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG------------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALG------IS 316 (592)
T ss_dssp ----CCEEESSSEEEEE------------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSS------CC
T ss_pred eEEEEEECCChHHHHHH------------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcC------CC
Confidence 88999999998765321 123456789999999998642 334444444555443 44
Q ss_pred -EEEEEecCCCCCC-hhhHH---HHHHHHh-cCCCCC----eEEEEecCCCcChH--------------HHHHHHHHhcc
Q 014461 260 -RVLCMNKVDLVTK-KKDLL---KVAEQFK-HLPGYE----RIFMTSGLKGAGLK--------------ALTQYLMEQAV 315 (424)
Q Consensus 260 -~ilV~NK~Dl~~~-~~~~~---~~~~~~~-~~~~~~----~~~~iSA~~g~gi~--------------~L~~~i~~~l~ 315 (424)
+|+|+||+|+... ..... ..+..+. ...++. +++++||++|.|++ .|++.|...++
T Consensus 317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 8999999999762 22222 2233333 334542 69999999999998 78888877654
No 165
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.71 E-value=7.4e-17 Score=143.83 Aligned_cols=161 Identities=21% Similarity=0.229 Sum_probs=103.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCc--cEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADT--QICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..++|+++|++|||||||+++|.+..+.... .+..+.+...+.+..++. .+.+|||||........ .
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~-~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~---------~- 96 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES-KSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT---------S- 96 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC-CCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC---------H-
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh---------H-
Confidence 4589999999999999999999987664322 222222333344445554 45679999986543211 1
Q ss_pred HHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEE
Q 014461 216 AWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 216 ~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i 295 (424)
..+..++++++|+|.++..+ ...+..|+..+........|+++|+||+|+.............+....+. .++.+
T Consensus 97 --~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~-~~ld~ 171 (191)
T 1oix_A 97 --AYYRGAVGALLVYDIAKHLT--YENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL-SFIET 171 (191)
T ss_dssp --HHHTTCCEEEEEEETTCHHH--HHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC-EEEEC
T ss_pred --HHhhcCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC-EEEEE
Confidence 12355789999999864321 12222344333221223578999999999965322223344455554555 48999
Q ss_pred ecCCCcChHHHHHHHHHhc
Q 014461 296 SGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 296 SA~~g~gi~~L~~~i~~~l 314 (424)
||+++.|++++++.|.+.+
T Consensus 172 Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 172 SALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 166
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.5e-17 Score=158.15 Aligned_cols=123 Identities=23% Similarity=0.388 Sum_probs=88.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHh
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWS 218 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 218 (424)
..+|+++|.||||||||+|+|++.+ +.++++|+||+++..+.+...+.++.++||||+..... .........+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~-----~~~~~g~~~l~ 145 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAK-----DGRGRGKQVIA 145 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC----------CHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCch-----hhhHHHHHHHH
Confidence 4689999999999999999999987 45899999999999999999999999999999975421 12334566777
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCC
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDL 269 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl 269 (424)
.++.||++++|+|++++... ...+...|....... ...|.++++||+|.
T Consensus 146 ~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l-~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRL-NKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEE-TCCCCCEEEEECSS
T ss_pred HHHhcCccccccccCccHHH-HHHHHHHHHHhhHhh-ccCChhhhhhHhhh
Confidence 88999999999999753211 112222333332211 12455666777664
No 167
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.71 E-value=9e-17 Score=161.60 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=99.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCccee----------ecCCC----------------------CceeeEEEEEEec
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAA----------VSRKT----------------------NTTTHEVLGVMTK 184 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~----------~~~~~----------------------~tt~~~~~~~~~~ 184 (424)
...++|+++|++|+|||||+|+|++..... .+..+ +.|.+.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998643111 11112 2233333334556
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCM 264 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~ 264 (424)
.+..+.+|||||+..+ .......+..+|++++|+|++++...........+...+ ..|+++|+
T Consensus 102 ~~~~~~iiDtpGh~~f------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~-----~~~iIvvi 164 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLG-----IKHIVVAI 164 (434)
T ss_dssp SSEEEEEEECCCSGGG------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTT-----CCEEEEEE
T ss_pred CCceEEEEECCChHHH------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEE
Confidence 6778999999997643 122234567899999999998766444444444444432 13689999
Q ss_pred ecCCCCCCh-hh---HHHHHHHHhcCCC--C--CeEEEEecCCCcChHHH
Q 014461 265 NKVDLVTKK-KD---LLKVAEQFKHLPG--Y--ERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 265 NK~Dl~~~~-~~---~~~~~~~~~~~~~--~--~~~~~iSA~~g~gi~~L 306 (424)
||+|+.... .. ..+....+....+ . .+++++||++|.|++++
T Consensus 165 NK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 165 NKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp ECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred EcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 999998632 22 2233344444444 2 36999999999999984
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.71 E-value=3.3e-18 Score=173.37 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=106.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
++.++|+++|++|+|||||+++|.+..+. .+..++.|.+.....+..++..+.||||||+..+....
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~-~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~------------ 68 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVA-SGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMR------------ 68 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHS-BTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSB------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCc-cccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHH------------
Confidence 36788999999999999999999875543 22334444443333344567789999999987653211
Q ss_pred HhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh-hhHHHHHHH---HhcCC-CCCe
Q 014461 217 WSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK-KDLLKVAEQ---FKHLP-GYER 291 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~---~~~~~-~~~~ 291 (424)
...+..+|++++|+|++++........+..+... +.|+++++||+|+.... ..+...+.. +.+.+ +..+
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~------~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~ 142 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA------QVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQ 142 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT------TCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCE
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc------CceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCcc
Confidence 1346778999999999876655554444444433 47899999999997531 111100000 01111 1236
Q ss_pred EEEEecCCCcChHHHHHHHHHh
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~ 313 (424)
++++||++|.|+++|+++|...
T Consensus 143 ~v~vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 143 FVHVSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp EEECCTTTCTTCTTHHHHTTTT
T ss_pred EEEEeeeeccCcchhhhhhhhh
Confidence 9999999999999999999764
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=6e-18 Score=165.76 Aligned_cols=188 Identities=18% Similarity=0.234 Sum_probs=113.0
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceeeE-------E----------EEE---------
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE-------V----------LGV--------- 181 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~-------~----------~~~--------- 181 (424)
+...+...|+++|.+|+|||||+++|. |.++..+...++++... . ..+
T Consensus 74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~ 153 (355)
T 3p32_A 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTL 153 (355)
T ss_dssp GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCH
T ss_pred hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccc
Confidence 344567899999999999999999986 34444343333332200 0 000
Q ss_pred -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
+...+.++.||||||+... . ...+..+|++++|+|++.... ...+..
T Consensus 154 ~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~------------~---~~~~~~aD~vl~V~d~~~~~~--~~~l~~--- 213 (355)
T 3p32_A 154 GGVTRATRETVVLLEAAGFDVILIETVGVGQS------------E---VAVANMVDTFVLLTLARTGDQ--LQGIKK--- 213 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECSCSSH------------H---HHHHTTCSEEEEEEESSTTCT--TTTCCT---
T ss_pred cchhHHHHHHHHHHhhCCCCEEEEeCCCCCcH------------H---HHHHHhCCEEEEEECCCCCcc--HHHHHH---
Confidence 1225678999999997532 0 112467899999999864321 111110
Q ss_pred HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC----C----C-CCeEEEEecCCCcChHHHHHHHHHhccC--C
Q 014461 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL----P----G-YERIFMTSGLKGAGLKALTQYLMEQAVQ--R 317 (424)
Q Consensus 249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~----~----~-~~~~~~iSA~~g~gi~~L~~~i~~~l~~--~ 317 (424)
.+ ...|+++|+||+|+... .........+... . + ..+++++||++|.|+++|+++|.+.+.. .
T Consensus 214 ~~-----~~~p~ivVlNK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~~~ 287 (355)
T 3p32_A 214 GV-----LELADIVVVNKADGEHH-KEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVLTG 287 (355)
T ss_dssp TS-----GGGCSEEEEECCCGGGH-HHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred hH-----hhcCCEEEEECCCCcCh-hHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence 00 12579999999999753 2222222222211 1 1 2459999999999999999999998754 1
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461 318 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ 349 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~ 349 (424)
+..++. . ......+++.+.+|+++++.+.+
T Consensus 288 ~~~~~~-~-r~~~~~~~~~e~i~e~l~~~~~~ 317 (355)
T 3p32_A 288 AGEFDA-R-RRDQQVDWTWQLVRDAVLDRVWS 317 (355)
T ss_dssp TTHHHH-H-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHH-H-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111 1 11234556788999999887754
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.68 E-value=1.7e-16 Score=164.56 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=102.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEec------------------CCccEEEEeCCCcc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTK------------------ADTQICIFDTPGLM 198 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~------------------~~~~i~l~DtpG~~ 198 (424)
.+.++|+++|++|+|||||+++|++..+.... ..+.|.+.....+.. ....+.||||||+.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e-~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASRE-AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCcccc-CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 45789999999999999999999976543111 112222211111111 11259999999987
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh----
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---- 274 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---- 274 (424)
.+..... ..+..+|++++|+|++++........+.++... +.|+++|+||+|+.....
T Consensus 82 ~F~~~~~------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~------~vPiIVViNKiDl~~~~~~~~~ 143 (594)
T 1g7s_A 82 AFTTLRK------------RGGALADLAILIVDINEGFKPQTQEALNILRMY------RTPFVVAANKIDRIHGWRVHEG 143 (594)
T ss_dssp CCTTSBC------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSTTCCCCTT
T ss_pred HHHHHHH------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc------CCeEEEEecccccccccccccC
Confidence 6532111 235678999999999987665555555555542 478999999999964210
Q ss_pred ------------h----HH----HHHHHHhcC-------------CCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 275 ------------D----LL----KVAEQFKHL-------------PGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 275 ------------~----~~----~~~~~~~~~-------------~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
. +. +....+.+. ....+++++||++|.|+++|+++|...++
T Consensus 144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 11 111222211 12236999999999999999999998764
No 171
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.68 E-value=1.1e-17 Score=156.83 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=97.6
Q ss_pred hhHHHHHHhhccccccccCCCCCcEEEEeCCCCccCCC-C--------------CCCCCCCccChhhHHHHHHhcCCeEE
Q 014461 24 PLFIHRFYSAQPQQTDNETENDCDSVFDSSYFRIPTID-D--------------PQNNNAAKKQEPTWDEKYRERTDRIV 88 (424)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~d~vie~~dar~p~~~-~--------------~k~Dl~~~~~~~~~~~~~~~~~~~i~ 88 (424)
+||-|||.++..+... .+..+|+++++.|||.|.++ + ||+||++++..+.|..++.+.|..+
T Consensus 2 ~w~PGhm~ka~~~~~~--~l~~~D~vl~VvDar~P~~~~~~~l~ll~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKD--LLRLVNTVVEVRDARAPFATSAYGVDFSRKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHH--HHTTCSEEEEEEETTSTTTTSCTTSCCTTSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHH--HHhhCCEEEEEeeCCCCCcCcChHHHhcCCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 4778899999888877 88899999999999999988 5 3569998888889999998888888
Q ss_pred Eeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccc-eEEEEEecCCCChhHHHHhHhCCccee
Q 014461 89 FGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKS-VAVGIIGAPNAGKSSIINYMVGTKVAA 166 (424)
Q Consensus 89 f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~v~vvG~~~~GKStLin~l~~~~~~~ 166 (424)
+.++ ++.|...+ ++. .... .+++++|.||+|||||+|+|.+.....
T Consensus 79 ~iSa~~~~gi~~L-----------------~~~---------------l~~~~~~v~~vG~~~vGKSslin~l~~~~~~~ 126 (262)
T 3cnl_A 79 ITTHKGEPRKVLL-----------------KKL---------------SFDRLARVLIVGVPNTGKSTIINKLKGKRASS 126 (262)
T ss_dssp EECCTTSCHHHHH-----------------HHH---------------CCCTTCEEEEEESTTSSHHHHHHHHHTTCC--
T ss_pred EEECCCCcCHHHH-----------------HHH---------------HHHhhhheEEeCCCCCCHHHHHHHHhcccccc
Confidence 8887 77776655 110 1111 689999999999999999999988877
Q ss_pred ecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 167 VSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 167 ~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
+++.+++|+..... ..+..+.+|||||+..+
T Consensus 127 ~~~~~g~T~~~~~~---~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 127 VGAQPGITKGIQWF---SLENGVKILDTPGILYK 157 (262)
T ss_dssp --------CCSCEE---ECTTSCEEESSCEECCC
T ss_pred cCCCCCCccceEEE---EeCCCEEEEECCCcccC
Confidence 88888888765422 22457899999999865
No 172
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=1e-16 Score=161.23 Aligned_cols=153 Identities=17% Similarity=0.290 Sum_probs=95.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc--cee----------------------------ecCCCCceeeEEEEEEecCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK--VAA----------------------------VSRKTNTTTHEVLGVMTKADT 187 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~--~~~----------------------------~~~~~~tt~~~~~~~~~~~~~ 187 (424)
..++|+++|++|+|||||+++|++.. +.. .....++|.+.....+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 46899999999999999999998531 110 011345565555445667788
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC-------CCCchHHHHHHHHHhccCCCCCCcE
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH-------LTSPDSRVIRLIERMGKQAPPKQKR 260 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~-------~~~~~~~~~~~l~~~~~~~~~~~p~ 260 (424)
.+.+|||||+..+ .......+..+|++++|+|++++ +..........+...+ ..|+
T Consensus 85 ~~~iiDtpG~~~f------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~-----~~~i 147 (435)
T 1jny_A 85 FFTIIDAPGHRDF------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMG-----LDQL 147 (435)
T ss_dssp EEEECCCSSSTTH------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTT-----CTTC
T ss_pred EEEEEECCCcHHH------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcC-----CCeE
Confidence 9999999998643 23344567889999999999874 3333333333333332 1358
Q ss_pred EEEEecCCCCCC---hh---hHHHHHHHHhcCCCC----CeEEEEecCCCcChHHHH
Q 014461 261 VLCMNKVDLVTK---KK---DLLKVAEQFKHLPGY----ERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 261 ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~~~----~~~~~iSA~~g~gi~~L~ 307 (424)
++|+||+|+... .. ...+.+..+....++ .+++++||++|.|+.+++
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 999999999862 11 122233333333332 469999999999997543
No 173
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=1e-16 Score=169.76 Aligned_cols=166 Identities=22% Similarity=0.251 Sum_probs=108.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEE---------EEEe------------------cCC--
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVL---------GVMT------------------KAD-- 186 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~---------~~~~------------------~~~-- 186 (424)
....++|+|+|.+|+|||||+|+|+|..+..++..++|...... ..+. ..+
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 44679999999999999999999999988777777766211000 0000 000
Q ss_pred ----------------------------ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCC
Q 014461 187 ----------------------------TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTS 238 (424)
Q Consensus 187 ----------------------------~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~ 238 (424)
..+.+|||||+.... .....+...+..+|++++|+|++.+.+.
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~---------~~~~~~~~~i~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE---------ARNELSLGYVNNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH---------TCHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh---------hHHHHHHHHHHhCCEEEEEEeCCCccch
Confidence 469999999986531 1234455667889999999999876554
Q ss_pred chHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh----h---h-------HHHHH-HHHhcCC-------CCCeEEEEe
Q 014461 239 PDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK----K---D-------LLKVA-EQFKHLP-------GYERIFMTS 296 (424)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~----~---~-------~~~~~-~~~~~~~-------~~~~~~~iS 296 (424)
.+... +...+.. .+.|+++|+||+|+.... . . +.... ..+.... ...++++||
T Consensus 217 ~e~~~--l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vS 291 (695)
T 2j69_A 217 GERRY--LENYIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELS 291 (695)
T ss_dssp HHHHH--HHHHTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECC
T ss_pred hHHHH--HHHHHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEe
Confidence 43322 2222221 146799999999986532 1 1 11111 1122211 123599999
Q ss_pred cC--------------CCcChHHHHHHHHHhcc
Q 014461 297 GL--------------KGAGLKALTQYLMEQAV 315 (424)
Q Consensus 297 A~--------------~g~gi~~L~~~i~~~l~ 315 (424)
|+ +|.|+++|+++|.+.+.
T Consensus 292 Ak~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 292 SIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred ChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 99 99999999999988764
No 174
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=147.72 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=59.9
Q ss_pred cccEEEEEEeCCCCCCCchHHHHHHHHHhccC-CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC-CCCCeEEEEecCC
Q 014461 222 LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ-APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL-PGYERIFMTSGLK 299 (424)
Q Consensus 222 ~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~iSA~~ 299 (424)
.+|++++|+|+++........+..|+..+... ...+.|+++|+||+|+...+ .. +..+.+... .+. .++++||++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v-~~~~~~~~~~~~~-~~~e~SAk~ 238 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-YI-RDAHTFALSKKNL-QVVETSARS 238 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-HH-HHHHHHHHTSSSC-CEEECBTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-HH-HHHHHHHHhcCCC-eEEEEECCC
Confidence 68999999999764112233344444443221 11257999999999997532 22 344455543 344 599999999
Q ss_pred CcChHHHHHHHHHhc
Q 014461 300 GAGLKALTQYLMEQA 314 (424)
Q Consensus 300 g~gi~~L~~~i~~~l 314 (424)
|.|+++++++|.+.+
T Consensus 239 g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLI 253 (255)
T ss_dssp TBSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 175
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.67 E-value=1.6e-16 Score=154.74 Aligned_cols=188 Identities=15% Similarity=0.244 Sum_probs=113.5
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceeeE--EEE--------------E----------
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE--VLG--------------V---------- 181 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~--~~~--------------~---------- 181 (424)
....+...|+++|++|+|||||+|.|. +.++..++..++++... ..+ .
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l 130 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHL 130 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC----
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCcccccc
Confidence 345677899999999999999999996 44555555555443310 000 0
Q ss_pred -------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 182 -------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 182 -------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
+...+.++.++||||+..+. . .....+|++++|+|++.+..... +....
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~---------~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~- 192 (341)
T 2p67_A 131 GGASQRARELMLLCEAAGYDVVIVETVGVGQSE------T---------EVARMVDCFISLQIAGGGDDLQG--IKKGL- 192 (341)
T ss_dssp -CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH------H---------HHHTTCSEEEEEECC------CC--CCHHH-
T ss_pred chhHHHHHHHHHHhhccCCCEEEEeCCCccchH------H---------HHHHhCCEEEEEEeCCccHHHHH--HHHhh-
Confidence 01346789999999986431 1 02367899999999864311100 00000
Q ss_pred HhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CCC-----CCeEEEEecCCCcChHHHHHHHHHhcc---C
Q 014461 249 RMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LPG-----YERIFMTSGLKGAGLKALTQYLMEQAV---Q 316 (424)
Q Consensus 249 ~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~~-----~~~~~~iSA~~g~gi~~L~~~i~~~l~---~ 316 (424)
. +.|.++|+||+|+... .......+.+.. ... ..+++++||++|.|+++|+++|.+.+. .
T Consensus 193 -~------~~p~ivv~NK~Dl~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~~~~ 264 (341)
T 2p67_A 193 -M------EVADLIVINKDDGDNH-TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA 264 (341)
T ss_dssp -H------HHCSEEEECCCCTTCH-HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHHH
T ss_pred -h------cccCEEEEECCCCCCh-HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 1 2568999999999763 223222222221 111 356899999999999999999998775 2
Q ss_pred CCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCcc
Q 014461 317 RPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQE 350 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~e 350 (424)
++ .++ .... ....+.+.|.+++.+++.+.++
T Consensus 265 ~~-~~~-~~r~-~~~~~~~~e~i~e~l~~~~~~~ 295 (341)
T 2p67_A 265 SG-RLQ-QVRQ-QQSVEWLRKQTEEEVLNHLFAN 295 (341)
T ss_dssp TT-HHH-HHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CC-hHH-HHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 21 111 1111 2244556788899888887665
No 176
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.67 E-value=1.2e-16 Score=152.64 Aligned_cols=163 Identities=15% Similarity=0.172 Sum_probs=102.8
Q ss_pred EEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV 220 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 220 (424)
||+++|.+|||||||++++.+..........+.|.......+ .....+.+|||||+..+.... + .....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-~~~v~LqIWDTAGQErf~~~~--------l-~~~~yy 70 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-STLIDLAVMELPGQLNYFEPS--------Y-DSERLF 70 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-CSSSCEEEEECCSCSSSCCCS--------H-HHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-ccEEEEEEEECCCchhccchh--------h-hhhhhc
Confidence 589999999999999998876543221111222221111112 234789999999998653110 0 011346
Q ss_pred ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-------hHHHHHHHHhcC----CCC
Q 014461 221 NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-------DLLKVAEQFKHL----PGY 289 (424)
Q Consensus 221 ~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-------~~~~~~~~~~~~----~~~ 289 (424)
+.++++++|+|+++........+.+++...... .++.|+++|+||+|+..... ...+..+++++. .+.
T Consensus 71 r~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i 149 (331)
T 3r7w_B 71 KSVGALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQV 149 (331)
T ss_dssp TTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCE
T ss_pred cCCCEEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCc
Confidence 789999999999875222223444455543222 24689999999999987521 222334455553 233
Q ss_pred CeEEEEecCCCcChHHHHHHHHHhccC
Q 014461 290 ERIFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 290 ~~~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
.++++||++ .+|.+.|..|.+.+.+
T Consensus 150 -~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 150 -SFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp -EEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred -eEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 599999998 5899999999877654
No 177
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.66 E-value=4.3e-16 Score=168.64 Aligned_cols=163 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcce---------------eecCCCCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVA---------------AVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~---------------~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
.....+|+++|++|+|||||+++|++.... ......+.|.+.....+...+..+.+|||||+..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 345689999999999999999999863100 00112333433322234556788999999998642
Q ss_pred CCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEEEEecCCCCCChhhH---
Q 014461 201 KSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVLCMNKVDLVTKKKDL--- 276 (424)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ilV~NK~Dl~~~~~~~--- 276 (424)
.......+..+|++|+|+|++++........+..+... +.| +|+|+||+|+....+..
T Consensus 373 ------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l------gIP~IIVVINKiDLv~d~e~le~i 434 (1289)
T 3avx_A 373 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV------GVPYIIVFLNKCDMVDDEELLELV 434 (1289)
T ss_dssp ------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH------TCSCEEEEEECCTTCCCHHHHHHH
T ss_pred ------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc------CCCeEEEEEeecccccchhhHHHH
Confidence 33445567889999999999887665555555555543 367 78999999998643222
Q ss_pred HHHHHHHhcCCCC----CeEEEEecCCC--------cChHHHHHHHHHhccC
Q 014461 277 LKVAEQFKHLPGY----ERIFMTSGLKG--------AGLKALTQYLMEQAVQ 316 (424)
Q Consensus 277 ~~~~~~~~~~~~~----~~~~~iSA~~g--------~gi~~L~~~i~~~l~~ 316 (424)
......+....++ .+++++||++| .|+++|++.|.+.++.
T Consensus 435 ~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 435 EMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp HHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 2223333333332 36999999999 5799999999987753
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.66 E-value=4.4e-16 Score=159.71 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=76.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--ce-------------eecC------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA-------------AVSR------KTNTTTHEVLGVMTKADTQICIFDTP 195 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~-------------~~~~------~~~tt~~~~~~~~~~~~~~i~l~Dtp 195 (424)
.+..+|+++|++|+|||||+++|++.. .. .+.+ ..+.|.......+.+.+..+.+||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 356899999999999999999998531 10 0111 12222222223355678899999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
|+..+. ......+..+|++|+|+|++++.......+...+.. .+.|+++|+||+|+...
T Consensus 91 G~~df~------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~------~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL------RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT------TTCCEEEEEECTTSCCS
T ss_pred CChhHH------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH------cCCCEEEEEcCcCCccc
Confidence 986542 123345778999999999987654333333333322 24789999999999764
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.65 E-value=1.1e-16 Score=169.37 Aligned_cols=188 Identities=14% Similarity=0.196 Sum_probs=115.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC--cce---------eecC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT--KVA---------AVSR------KTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~--~~~---------~~~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
.+..+|+++|++|+|||||+|+|++. .+. .+.+ ..++|.......+.+.+.++.+|||||+..
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 35689999999999999999999842 110 0111 234444444445667788999999999875
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHH
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKV 279 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~ 279 (424)
+. . .....+..+|++++|+|++++.......++..+... +.|+++|+||+|+... +....
T Consensus 88 f~---------~---~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~------~~p~ilviNK~Dl~~~--~~~~~ 147 (693)
T 2xex_A 88 FT---------V---EVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY------GVPRIVFVNKMDKLGA--NFEYS 147 (693)
T ss_dssp CC---------H---HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC--CHHHH
T ss_pred hH---------H---HHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc------CCCEEEEEECCCcccc--chHHH
Confidence 42 1 122345668999999999877665555555545443 4789999999999864 23333
Q ss_pred HHHHhc---CCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCC-C----CCcchhhHHHH-HHHHHHHHHHhhcCcc
Q 014461 280 AEQFKH---LPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSED-P----LTMSEEVMKNI-SLEVVRERLLDHVHQE 350 (424)
Q Consensus 280 ~~~~~~---~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~-~----~~~~~~~~~~~-~~e~ire~l~~~l~~e 350 (424)
.+.+.. ......++++|+ |.|++.+++++.+.. +.|+ . ...++.+.++. .++.+|+++++.+.++
T Consensus 148 ~~~l~~~l~~~~~~~~ipisa--~~~~~~l~d~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~ 221 (693)
T 2xex_A 148 VSTLHDRLQANAAPIQLPIGA--EDEFEAIIDLVEMKC----FKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAET 221 (693)
T ss_dssp HHHHHHHHCCCEEESEEEECC--GGGCCEEEETTTTEE----EECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCceeEEeeccc--CCCcceeeeeeccee----EEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhC
Confidence 333332 233345789998 777777777654433 2232 1 11222222222 4678899998887544
No 180
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.65 E-value=1.3e-15 Score=161.14 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=77.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--c---eee------cC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V---AAV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~---~~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
.+..+|+++|++|+|||||+|+|+... + ..+ .+ ..+.|.......+.+.+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 457899999999999999999998311 1 001 11 223444333444566788999999999865
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
+ .......+..+|++++|+|++++.......++..+... +.|+++|+||+|+...
T Consensus 90 f------------~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 F------------TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp C------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECTTSTTC
T ss_pred h------------HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc------CCCEEEEEECCCcccC
Confidence 3 11223445678999999999877655544444444432 4789999999999764
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.65 E-value=9.8e-16 Score=152.14 Aligned_cols=167 Identities=26% Similarity=0.371 Sum_probs=111.9
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-ccEEEEeCCCcccCCCCCChhhhhhHHHHHH
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-TQICIFDTPGLMLNKSGYSHKDVKVRVESAW 217 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 217 (424)
...|+++|++|||||||+++|++... .+.+.+.+|.....+.+...+ ..+.++||||+....... ..+. ...+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~--~~L~---~~fl 230 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG--KGLG---LEFL 230 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS--CCSC---HHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhh--hhhh---HHHH
Confidence 45689999999999999999998764 467778888777777776665 789999999986431100 0010 1122
Q ss_pred hhcccccEEEEEEeCCCCCCCchHHHHH---HHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEE
Q 014461 218 SAVNLFEVLMVVFDVHRHLTSPDSRVIR---LIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFM 294 (424)
Q Consensus 218 ~~~~~aD~vl~VvD~~~~~~~~~~~~~~---~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+..+|.+++|+|++ ......+.. .+..+... ....|.++|+||+|+... ..+....+.+. ..+. .+++
T Consensus 231 ~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~a-L~~~P~ILVlNKlDl~~~-~~~~~l~~~l~-~~g~-~vi~ 303 (416)
T 1udx_A 231 RHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPA-LLRRPSLVALNKVDLLEE-EAVKALADALA-REGL-AVLP 303 (416)
T ss_dssp HHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHH-HHHSCEEEEEECCTTSCH-HHHHHHHHHHH-TTTS-CEEE
T ss_pred HHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHH-hhcCCEEEEEECCChhhH-HHHHHHHHHHH-hcCC-eEEE
Confidence 3456789999999996 222222222 22222100 013689999999999764 33333333333 2344 4999
Q ss_pred EecCCCcChHHHHHHHHHhccCCC
Q 014461 295 TSGLKGAGLKALTQYLMEQAVQRP 318 (424)
Q Consensus 295 iSA~~g~gi~~L~~~i~~~l~~~~ 318 (424)
+||+++.|+++|+++|.+.+...+
T Consensus 304 iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 304 VSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred EECCCccCHHHHHHHHHHHHHhcc
Confidence 999999999999999999987654
No 182
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.64 E-value=2e-15 Score=141.58 Aligned_cols=134 Identities=22% Similarity=0.245 Sum_probs=92.5
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHH
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRV 213 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~ 213 (424)
....+.++|+++|.+|+|||||+|+|++.....++..+++|.......+..++..+.+|||||+..+.... ......+
T Consensus 31 ~~~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~--~~~~~~i 108 (262)
T 3def_A 31 QKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVN--HQALELI 108 (262)
T ss_dssp HTTCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEEC--HHHHHHH
T ss_pred hccCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccch--HHHHHHH
Confidence 34456899999999999999999999998877778888888877777777888899999999997653211 1111112
Q ss_pred HHHHhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 214 ESAWSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 214 ~~~~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
.+.+ ....+|++++|+|++.. ....+..+.+.+....... ...|+++|+||+|+..
T Consensus 109 ~~~l-~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 109 KGFL-VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE-IWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHT-TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECTTCCC
T ss_pred HHHH-hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh-hhcCEEEEEeCcccCC
Confidence 2222 12478999999988642 2223335666666543211 1148999999999964
No 183
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.64 E-value=1.1e-15 Score=150.08 Aligned_cols=167 Identities=17% Similarity=0.223 Sum_probs=103.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeE----------------------------------------
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHE---------------------------------------- 177 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~---------------------------------------- 177 (424)
.-.+|+++|.+|||||||+|+|+|..+...+... +|+..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~-vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI-VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS-CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc-ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 3458999999999999999999997653222211 11000
Q ss_pred ---------------EEEEEecCCccEEEEeCCCcccCCCC-CChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchH
Q 014461 178 ---------------VLGVMTKADTQICIFDTPGLMLNKSG-YSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDS 241 (424)
Q Consensus 178 ---------------~~~~~~~~~~~i~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~ 241 (424)
...+.......+.+|||||+...... .+..........+..++..+|++++|+|++.. .....
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~~ 190 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLATS 190 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGGC
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCCH
Confidence 11112233557999999999765321 11112223344455567889999999987532 11223
Q ss_pred HHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHH
Q 014461 242 RVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYL 310 (424)
Q Consensus 242 ~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i 310 (424)
.+..++..+.. .+.|+++|+||+|+........+..+.+....+. .++++|+.++.|+++.+..+
T Consensus 191 ~~~~l~~~~~~---~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 DAIKISREVDP---SGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp HHHHHHHHSCT---TCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHhcc---cCCCEEEEEeCCccCCCcccHHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 44555665543 2468999999999987544444434433333344 48999999999988765543
No 184
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.63 E-value=9.8e-16 Score=157.77 Aligned_cols=118 Identities=16% Similarity=0.229 Sum_probs=83.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-----ce----------eecC------CCCceeeEEEEEEecCCccEEEEeCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VA----------AVSR------KTNTTTHEVLGVMTKADTQICIFDTP 195 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~----------~~~~------~~~tt~~~~~~~~~~~~~~i~l~Dtp 195 (424)
.+..+|+|+|+.++|||||..+|+... .. .+.+ .-+.|.......+.+.+..++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 456899999999999999999996210 00 1111 12333333333467889999999999
Q ss_pred CcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 196 GLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 196 G~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
|+.++. ..+.++ ++.+|.+|+|+|+..+...+...+++.+.+.+ .|.++++||+|....
T Consensus 109 GHvDF~---------~Ev~ra---L~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~------lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS---------EDTYRV---LTAVDSALVVIDAAKGVEAQTRKLMDVCRMRA------TPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS---------HHHHHH---HHSCSEEEEEEETTTBSCHHHHHHHHHHHHTT------CCEEEEEECTTSCCC
T ss_pred CcHHHH---------HHHHHH---HHhcCceEEEeecCCCcccccHHHHHHHHHhC------CceEEEEecccchhc
Confidence 998763 234444 55679999999999988877777777777653 889999999998764
No 185
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-16 Score=145.38 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=81.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHH
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVES 215 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~ 215 (424)
..+.++|+++|++|+|||||+|+|.+..+.........+.. .......+.+|||||+.... .....
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~---------~~~~~ 74 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-----ADYDGSGVTLVDFPGHVKLR---------YKLSD 74 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-----TTGGGSSCEEEECCCCGGGT---------HHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-----EEeeCceEEEEECCCcHHHH---------HHHHH
Confidence 34578999999999999999999998765321111111110 11245678999999986542 11111
Q ss_pred HH-hhcccccEEEEEEeCC-CCCCCchHHHHHHHHHhccC----CCCCCcEEEEEecCCCCCChhh------HHHHHHHH
Q 014461 216 AW-SAVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTKKKD------LLKVAEQF 283 (424)
Q Consensus 216 ~~-~~~~~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~----~~~~~p~ilV~NK~Dl~~~~~~------~~~~~~~~ 283 (424)
.+ .....+|++++|+|++ +..+ ......++.++... ...+.|+++|+||+|+...... +.+....+
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~ 152 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKK--LTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKV 152 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTC--CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEEECCCChHH--HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHH
Confidence 11 1223479999999997 3222 22222333332111 1235899999999999875321 12223333
Q ss_pred hcCCCCCeEEEEecCCCcC
Q 014461 284 KHLPGYERIFMTSGLKGAG 302 (424)
Q Consensus 284 ~~~~~~~~~~~iSA~~g~g 302 (424)
....+. .++++||++|.+
T Consensus 153 ~~~~~~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 153 IERRKK-SLNEVERKINEE 170 (218)
T ss_dssp HHHHHH-HHHC--------
T ss_pred HHHHhc-cccccccccccc
Confidence 333232 478999998865
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.63 E-value=4.5e-15 Score=139.75 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=90.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESA 216 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~ 216 (424)
...++|+++|.+|+|||||+|+|++..+..+++.+++|.......+...+..+.+|||||+..+... . ......+...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~-~-~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI-N-DMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE-C-HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccc-h-HHHHHHHHHH
Confidence 4578999999999999999999999887777888888877766667778889999999999764311 1 1111122221
Q ss_pred HhhcccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 217 WSAVNLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 217 ~~~~~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
.....+|++++|+|++.. +...+..+...+....... ...|+++|+||+|+...
T Consensus 115 -~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 115 -LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG-IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp -TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECCSCCCG
T ss_pred -hhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcc-cccCEEEEEECcccCCc
Confidence 123578999999988642 2222334555554432110 11589999999999754
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.62 E-value=1.2e-15 Score=154.69 Aligned_cols=153 Identities=16% Similarity=0.177 Sum_probs=87.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--c----------------------eeecC------CCCceeeEEEEEEecCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--V----------------------AAVSR------KTNTTTHEVLGVMTKAD 186 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~----------------------~~~~~------~~~tt~~~~~~~~~~~~ 186 (424)
...++|+++|++|+|||||+++|+... + +.+.+ ..+.|.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 356899999999999999999997411 1 00111 23444444333455677
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC-------CchHHHHHHHHHhccCCCCCCc
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT-------SPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~-------~~~~~~~~~l~~~~~~~~~~~p 259 (424)
..+.+|||||+..+. ......+..+|++|+|+|++++.. .........+... +.|
T Consensus 121 ~~~~iiDtPGh~~f~------------~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~------~vp 182 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYV------------TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ------GIN 182 (467)
T ss_dssp EEEEECCCCC-----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT------TCS
T ss_pred eEEEEEECCCcHHHH------------HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc------CCC
Confidence 889999999986542 223345678999999999986531 2222333333332 356
Q ss_pred -EEEEEecCCCCCC---hhhHH---HHHHHHhcCC-CC-----CeEEEEecCCCcChHHHH
Q 014461 260 -RVLCMNKVDLVTK---KKDLL---KVAEQFKHLP-GY-----ERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 260 -~ilV~NK~Dl~~~---~~~~~---~~~~~~~~~~-~~-----~~~~~iSA~~g~gi~~L~ 307 (424)
+++|+||+|+... .+... .....+.... ++ .+++++||++|.|+++++
T Consensus 183 ~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 183 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 8999999999642 11111 1222222222 22 359999999999998865
No 188
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.61 E-value=2e-15 Score=146.56 Aligned_cols=191 Identities=19% Similarity=0.223 Sum_probs=115.7
Q ss_pred hhhcccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCceee-----------------EEEEE--------
Q 014461 133 KEEDQKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTTTH-----------------EVLGV-------- 181 (424)
Q Consensus 133 ~~~~~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt~~-----------------~~~~~-------- 181 (424)
.....++..++++|++|||||||+|.|. +.++...+..+.++.. .....
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 128 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGT 128 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSS
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCccccc
Confidence 3445678899999999999999999998 4454444433332211 00000
Q ss_pred --------------EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHH
Q 014461 182 --------------MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLI 247 (424)
Q Consensus 182 --------------~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l 247 (424)
+...+.++.|+||||+..+. . .....+|++++|+|++.+.. ...+...+
T Consensus 129 l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~------~---------~v~~~~d~vl~v~d~~~~~~--~~~i~~~i 191 (337)
T 2qm8_A 129 LGGVAAKTRETMLLCEAAGFDVILVETVGVGQSE------T---------AVADLTDFFLVLMLPGAGDE--LQGIKKGI 191 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCH------H---------HHHTTSSEEEEEECSCC--------CCTTH
T ss_pred ccchHHHHHHHHHHHhcCCCCEEEEECCCCCcch------h---------hHHhhCCEEEEEEcCCCccc--HHHHHHHH
Confidence 12357899999999987431 0 11356899999999853211 00011111
Q ss_pred HHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhc----CC-----CCCeEEEEecCCCcChHHHHHHHHHhcc---
Q 014461 248 ERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKH----LP-----GYERIFMTSGLKGAGLKALTQYLMEQAV--- 315 (424)
Q Consensus 248 ~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~----~~-----~~~~~~~iSA~~g~gi~~L~~~i~~~l~--- 315 (424)
.+ .|.++|+||+|+...........+.+.. .. ..++++++||++|.|+++|++.|.+...
T Consensus 192 ~~--------~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~~~~ 263 (337)
T 2qm8_A 192 FE--------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLT 263 (337)
T ss_dssp HH--------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred hc--------cccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 3467888999986533222222222221 11 1356899999999999999999988764
Q ss_pred CCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccC
Q 014461 316 QRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEI 351 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~ei 351 (424)
..++ + ....+ ....+++.|++|+++++.+.++.
T Consensus 264 ~~~~-~-~~~r~-~~~~~~~~~~i~~~~~~~~~~~~ 296 (337)
T 2qm8_A 264 ATGE-I-AGKRR-EQDVKWMWALVHERLHQRLVGSA 296 (337)
T ss_dssp HTTH-H-HHHHH-HHHHHHHHHHHHHHHHHHHTSSH
T ss_pred hCcH-H-HHHHH-HHHHHHHHHHHHHHHHHHHHhCc
Confidence 2221 1 11112 23356788999999999887653
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.61 E-value=4.3e-15 Score=156.67 Aligned_cols=116 Identities=17% Similarity=0.233 Sum_probs=79.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcce-----ee------cC------CCCceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVA-----AV------SR------KTNTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~-----~~------~~------~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
.+..+|+++|++|+|||||+++|++.... .+ .+ ..+.|.......+...+..+.+|||||+..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45788999999999999999999842211 00 00 112343334444566788899999999864
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
+ .......+..+|++++|+|++++.......+...+... +.|+++|+||+|+.
T Consensus 87 f------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F------------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL------GLPRMVVVTKLDKG 139 (665)
T ss_dssp G------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT------TCCEEEEEECGGGC
T ss_pred h------------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc------cCCEEEEecCCchh
Confidence 3 12233455678999999999877655444454444442 47899999999997
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.60 E-value=1.1e-14 Score=154.38 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=77.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc--ce---e------ecC------CCCceeeEEEEEEecCC-------ccEEEE
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK--VA---A------VSR------KTNTTTHEVLGVMTKAD-------TQICIF 192 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~--~~---~------~~~------~~~tt~~~~~~~~~~~~-------~~i~l~ 192 (424)
.+..+|+++|++|+|||||+++|+... +. . ..+ ..+.|.......+.+.+ ..+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 356899999999999999999997421 11 0 111 12334333333344444 789999
Q ss_pred eCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
||||+.++. . .....+..+|++|+|+|++++.......++..+... +.|+++|+||+|+...
T Consensus 88 DTPG~~df~---------~---~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~------~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFT---------I---EVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY------KVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchH---------H---HHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc------CCCEEEEEeCCCcccc
Confidence 999987541 1 222345678999999999876554444444333322 4789999999998753
No 191
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.59 E-value=1e-16 Score=157.50 Aligned_cols=217 Identities=14% Similarity=0.110 Sum_probs=129.5
Q ss_pred CCcEEEEeCCCCccCCC-----------------CCCCCCCCcc----ChhhHHHH-HHhcCC---eEEEeec-cccccc
Q 014461 45 DCDSVFDSSYFRIPTID-----------------DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKL 98 (424)
Q Consensus 45 ~~d~vie~~dar~p~~~-----------------~~k~Dl~~~~----~~~~~~~~-~~~~~~---~i~f~~~-~~~~~~ 98 (424)
..++++.+.|++.|..+ .||+||.+.+ ....|... +...|. .+++.|+ ++.|..
T Consensus 71 ~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~ 150 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMA 150 (369)
T ss_dssp HCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHH
T ss_pred cCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHH
Confidence 34677777777665543 3377998764 34567654 455665 5788888 888887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCc
Q 014461 99 RIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNT 173 (424)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~t 173 (424)
.+. ..+...+ ...+++++|.+|+|||||+|+|++. ....++..++|
T Consensus 151 ~L~--------------~~I~~~~---------------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gt 201 (369)
T 3ec1_A 151 KVM--------------EAINRYR---------------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGT 201 (369)
T ss_dssp HHH--------------HHHHHHH---------------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTS
T ss_pred HHH--------------HHHHhhc---------------ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCe
Confidence 661 1111111 2357999999999999999999986 45668899999
Q ss_pred eeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC
Q 014461 174 TTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ 253 (424)
Q Consensus 174 t~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~ 253 (424)
|+......+ +..+.++||||+..... ............ +......|.+++++++............+++.
T Consensus 202 T~~~~~~~~---~~~~~liDtPG~~~~~~-~~~~l~~~~l~~-~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~----- 271 (369)
T 3ec1_A 202 TLDMIEIPL---ESGATLYDTPGIINHHQ-MAHFVDARDLKI-ITPKREIHPRVYQLNEGQTLFFGGLARLDYIK----- 271 (369)
T ss_dssp SCEEEEEEC---STTCEEEECCSCCCCSS-GGGGSCTTTHHH-HSCSSCCCCEEEEECTTEEEEETTTEEEEEEE-----
T ss_pred EEeeEEEEe---CCCeEEEeCCCcCcHHH-HHHHHhHHHHHH-HhcccccCceEEEEcCCceEEECCEEEEEEcc-----
Confidence 988665332 33489999999975531 111111111211 11226679999999984211000000011111
Q ss_pred CCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcCh
Q 014461 254 APPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGL 303 (424)
Q Consensus 254 ~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi 303 (424)
..+.|+++++||+|.... .......+.+.+..+.. +.+.++..+.++
T Consensus 272 -~~~~~~~~v~~k~d~~~~-~~~~~~~~~~~~~~g~~-l~p~~~~~~~~~ 318 (369)
T 3ec1_A 272 -GGRRSFVCYMANELTVHR-TKLEKADSLYANQLGEL-LSPPSKRYAAEF 318 (369)
T ss_dssp -SSSEEEEEEECTTSCEEE-EEGGGHHHHHHHHBTTT-BCSSCGGGTTTC
T ss_pred -CCCceEEEEecCCccccc-ccHHHHHHHHHHhcCCc-cCCCCchhhhhc
Confidence 124789999999998754 23333344444444433 555565554444
No 192
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=6.5e-15 Score=144.32 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=77.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecCCC------Ccee--eEEEEEEecCCc--cEEEEeCCCcccCCCC---
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------NTTT--HEVLGVMTKADT--QICIFDTPGLMLNKSG--- 203 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~------~tt~--~~~~~~~~~~~~--~i~l~DtpG~~~~~~~--- 203 (424)
...++|+++|++|+|||||+|+|++.........+ ..|. ......+...+. .+.+|||||+......
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 34688999999999999999999876443222111 1122 111111222333 6899999999543210
Q ss_pred -CCh-hhhhhHHHHHHhhcc----------cccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 204 -YSH-KDVKVRVESAWSAVN----------LFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 204 -~~~-~~~~~~~~~~~~~~~----------~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
... ..+...+...+.... .+|+++|+++.+ ..+...+. .+++.+. .+.|+|+|+||+|+.
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~---~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHH---HHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHH---HHHHHhc----cCCCEEEEEECCCCC
Confidence 000 111111122222211 235788888763 33332222 3444443 257899999999998
Q ss_pred CChhhHH--HHHHHHhcCCCCCeEEEEecCCCcChHHH----HHHHHHhcc
Q 014461 271 TKKKDLL--KVAEQFKHLPGYERIFMTSGLKGAGLKAL----TQYLMEQAV 315 (424)
Q Consensus 271 ~~~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~L----~~~i~~~l~ 315 (424)
...+... .....+....++. ++++||++|.| ++. .+.|.+.++
T Consensus 188 ~~~ev~~~k~~i~~~~~~~~i~-~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 188 TLKERERLKKRILDEIEEHNIK-IYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp CHHHHHHHHHHHHHHTTCC-CC-SCCCC----------CHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHHHHCCCC-EEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 7432211 2444555555654 89999999987 544 444544443
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.57 E-value=5.1e-15 Score=134.65 Aligned_cols=153 Identities=19% Similarity=0.206 Sum_probs=93.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC-----cceeecCCCCceeeE--------EEEEE------------------ecCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT-----KVAAVSRKTNTTTHE--------VLGVM------------------TKAD 186 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~-----~~~~~~~~~~tt~~~--------~~~~~------------------~~~~ 186 (424)
+..+|+++|.+|||||||+++|++. +.+.+...++++.+. ....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5678999999999999999999864 233344444322100 00001 1234
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
..+.+|||+|...... . ....++.+++|+|++.+.. ....+.... +.|.++|+||
T Consensus 109 ~d~iiidt~G~~~~~~-----~----------~~~~~~~~i~vvd~~~~~~----~~~~~~~~~------~~~~iiv~NK 163 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV-----D----------FDLGENYRVVMVSVTEGDD----VVEKHPEIF------RVADLIVINK 163 (221)
T ss_dssp CSEEEEEEEEBSSGGG-----G----------CCCSCSEEEEEEEGGGCTT----HHHHCHHHH------HTCSEEEEEC
T ss_pred CCEEEEeCCCCCCCCc-----h----------hccccCcEEEEEeCCCcch----hhhhhhhhh------hcCCEEEEec
Confidence 5788999999521100 0 0013578999999975421 111222222 2678999999
Q ss_pred CCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 267 VDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 267 ~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+|+.... .......+.+.......+++++||++|.|+++++++|.+.+.
T Consensus 164 ~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~ 213 (221)
T 2wsm_A 164 VALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213 (221)
T ss_dssp GGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 9986421 123333333333233346999999999999999999998774
No 194
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.56 E-value=1.2e-16 Score=156.92 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=113.8
Q ss_pred CCCCCCCCcc----ChhhHHHH-HHhcCC---eEEEeec-cccccchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 014461 62 DPQNNNAAKK----QEPTWDEK-YRERTD---RIVFGEE-AQKGKLRIFQEEEEERKHRALAKALLQAALERQEEEEEEV 132 (424)
Q Consensus 62 ~~k~Dl~~~~----~~~~~~~~-~~~~~~---~i~f~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 132 (424)
.||+||.+.+ ..+.|... +...|. .++++|+ ++.|..++. ..+....
T Consensus 103 ~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~--------------~~l~~~~---------- 158 (368)
T 3h2y_A 103 GNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELA--------------DAIEYYR---------- 158 (368)
T ss_dssp EECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHH--------------HHHHHHH----------
T ss_pred EEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHH--------------hhhhhhc----------
Confidence 4588998765 35567554 455565 6788888 888887661 1111111
Q ss_pred hhhcccceEEEEEecCCCChhHHHHhHhCCc------ceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCCh
Q 014461 133 KEEDQKSVAVGIIGAPNAGKSSIINYMVGTK------VAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSH 206 (424)
Q Consensus 133 ~~~~~~~~~v~vvG~~~~GKStLin~l~~~~------~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~ 206 (424)
...+|+++|.+|+|||||+|+|++.. ...++..++||+......+ +..+.++||||+..... ..
T Consensus 159 -----~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~-~~- 228 (368)
T 3h2y_A 159 -----GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQ-MA- 228 (368)
T ss_dssp -----TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTS-GG-
T ss_pred -----ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe---cCCeEEEeCCCcCcHHH-HH-
Confidence 23579999999999999999999853 4557889999987665432 22389999999976531 11
Q ss_pred hhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcC
Q 014461 207 KDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHL 286 (424)
Q Consensus 207 ~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~ 286 (424)
..+..............+.+++++|+............+++. ..+.|+++++||+|.... .......+.+.+.
T Consensus 229 ~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~------~~~~~~~~v~nk~d~~~~-~~~~~~~~~~~~~ 301 (368)
T 3h2y_A 229 HYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVS------GGRRAFTCHFSNRLTIHR-TKLEKADELYKNH 301 (368)
T ss_dssp GGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEE------SSSEEEEEEECTTSCEEE-EEHHHHHHHHHHH
T ss_pred HHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEec------CCCceEEEEecCcccccc-ccHHHHHHHHHHH
Confidence 111111111222246678999999884211100100011111 124789999999999864 3445555555555
Q ss_pred CCCCeEEEEecC
Q 014461 287 PGYERIFMTSGL 298 (424)
Q Consensus 287 ~~~~~~~~iSA~ 298 (424)
.+.. +.+.++.
T Consensus 302 ~g~~-l~p~~~~ 312 (368)
T 3h2y_A 302 AGDL-LSPPTPE 312 (368)
T ss_dssp BTTT-BCSSCHH
T ss_pred hCCc-cCCCchh
Confidence 5543 4455544
No 195
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=5.2e-15 Score=155.34 Aligned_cols=159 Identities=16% Similarity=0.292 Sum_probs=110.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC-----cceee------cCCC------CceeeEEEEEEecCCccEEEEeCCCcccCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT-----KVAAV------SRKT------NTTTHEVLGVMTKADTQICIFDTPGLMLNK 201 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~-----~~~~~------~~~~------~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~ 201 (424)
..+|+|+|+.++|||||..+|+.. +...+ .+.. +.|.......+.+.+..++|+||||+.++.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 467999999999999999999721 11111 1111 233333333366788999999999998662
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHH
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAE 281 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~ 281 (424)
..+. ..++.+|++|+|+|+..+...+...+++.+.+.+ .|.++++||+|....+ .....+
T Consensus 82 ---------~Ev~---raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~------lp~i~~INKmDr~~a~--~~~~~~ 141 (638)
T 3j25_A 82 ---------AEVY---RSLSVLDGAILLISAKDGVQAQTRILFHALRKMG------IPTIFFINKIDQNGID--LSTVYQ 141 (638)
T ss_dssp ---------HHHH---HHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT------CSCEECCEECCSSSCC--SHHHHH
T ss_pred ---------HHHH---HHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC------CCeEEEEeccccccCC--HHHHHH
Confidence 2233 4456789999999999998888777777777764 7889999999986532 111111
Q ss_pred HHhcC---------------------------------------------------------------CCCCeEEEEecC
Q 014461 282 QFKHL---------------------------------------------------------------PGYERIFMTSGL 298 (424)
Q Consensus 282 ~~~~~---------------------------------------------------------------~~~~~~~~iSA~ 298 (424)
++.+. ..+.+++..||+
T Consensus 142 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~ 221 (638)
T 3j25_A 142 DIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAK 221 (638)
T ss_dssp HHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCST
T ss_pred HHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccc
Confidence 11110 122357788999
Q ss_pred CCcChHHHHHHHHHhccCC
Q 014461 299 KGAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 299 ~g~gi~~L~~~i~~~l~~~ 317 (424)
+|.|++.|++.|.+.++..
T Consensus 222 ~~~Gv~~LLd~i~~~~p~p 240 (638)
T 3j25_A 222 SNIGIDNLIEVITNKFYSS 240 (638)
T ss_dssp TCCSHHHHHHHHHHSCCCS
T ss_pred cCCCchhHhhhhhccccCc
Confidence 9999999999999988643
No 196
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.6e-14 Score=126.90 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=73.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceee--cCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHH
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAV--SRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVE 214 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~--~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~ 214 (424)
.+.++|+++|.+|||||||+|+|.+..+... +..+.++ ....+..+.+|||||....... ....+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~-----~~~~~- 112 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYK-----LSDYL- 112 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-----HHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-------eeecCCeEEEEECCCCchHHHH-----HHHHH-
Confidence 4678999999999999999999998764321 1112121 1225678999999998755321 11111
Q ss_pred HHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccC----CCCCCcEEEEEecCCCCCC
Q 014461 215 SAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQ----APPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 215 ~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~----~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+..+|++++|+|++.. ......+..++..+... ...+.|+++|+||+|+...
T Consensus 113 --~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 113 --KTRAKFVKGLIFMVDSTVD-PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp --HHHGGGEEEEEEEEETTCC-HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred --HhhcccCCEEEEEEECCCC-chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 2233568999999999611 11222333333332111 1235899999999999865
No 197
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.52 E-value=1e-16 Score=160.23 Aligned_cols=239 Identities=16% Similarity=0.137 Sum_probs=132.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhC------CcceeecCCCC------------------------ceeeEE----EEEEec
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTN------------------------TTTHEV----LGVMTK 184 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~------------------------tt~~~~----~~~~~~ 184 (424)
+..|+++|.+|+||||+++.|.+ .++..+...++ ++++.. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999875 22322221111 222110 000012
Q ss_pred CCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCC-c-EEE
Q 014461 185 ADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQ-K-RVL 262 (424)
Q Consensus 185 ~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~-p-~il 262 (424)
.+.+++++||||..... ......+. ....+..+|.+++|+|+..+. + .....+.+.. .. | ..+
T Consensus 179 ~~~D~vIIDT~G~~~~~-----~~l~~~l~-~i~~~~~~d~vllVvda~~g~---~--~~~~~~~~~~----~~~~i~gv 243 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE-----KGLLEEMK-QIKEITNPDEIILVIDGTIGQ---Q--AGIQAKAFKE----AVGEIGSI 243 (432)
T ss_dssp SSCSEEEEECCCSCSSH-----HHHHHHHH-HTTSSSCCSEEEEEEEGGGGG---G--HHHHHHHHHT----TSCSCEEE
T ss_pred hCCCEEEEcCCCCcccc-----HHHHHHHH-HHHHHhcCcceeEEeeccccH---H--HHHHHHHHhh----cccCCeEE
Confidence 56789999999976321 11111121 233444689999999996532 1 2223333331 23 4 789
Q ss_pred EEecCCCCCChhhHHHHHHHHh-------------cCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCcch
Q 014461 263 CMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTMSE 328 (424)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~~~ 328 (424)
|+||+|..............+. ....+.+..++|+..|.| +..|++.+.+.+. ... ++
T Consensus 244 VlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~~~-------e~~-~~ 315 (432)
T 2v3c_C 244 IVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAEDMVD-------EKT-EE 315 (432)
T ss_dssp EEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTSCSC-------SSS-ST
T ss_pred EEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHHHHH-------hhh-HH
Confidence 9999998653232333322221 111223344567777777 7777666655432 122 33
Q ss_pred hhHHHHHHHHHHHHHHhhcCc------------cCCcceEE-EEEEEEeccCCeEEEEEEEE----eeCCCcccEEeccC
Q 014461 329 EVMKNISLEVVRERLLDHVHQ------------EIPYSIEH-RLIDWKDLRDGSLRIEQHLI----TNKLSQRKILVGKN 391 (424)
Q Consensus 329 ~~~~~~~~e~ire~l~~~l~~------------eip~~~~~-~~~~~~~~~~~~~~i~~~i~----~~~~s~k~ivig~~ 391 (424)
...+....++.++.+++.+.+ ++||.... ..+++...+++..++.+.|+ +||++|+-| +
T Consensus 316 ~~~k~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~a~i~smt~~er~~~~~i----~ 391 (432)
T 2v3c_C 316 SIDAIMRGKFTLNELMTQLEAIENMGSMKKILSMIPGFGGAMPKELSHLTEAKIKKYKVIISSMTKEERENPKII----K 391 (432)
T ss_dssp THHHHCCSCCHHHHHHHHTTTTSCC-----------------------CCHHHHHHHHHHHTTSCHHHHSSCTTC----C
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHccccccccchhhhcccHHHHHHHHHHHHhCCHHHhhCcccc----C
Confidence 333433446778888888886 99995332 22344322223467788888 999999943 7
Q ss_pred CchHHHHHHHHHH
Q 014461 392 GSKIGRIGVEANE 404 (424)
Q Consensus 392 g~~i~~i~~~~~~ 404 (424)
|+++++|+..|+.
T Consensus 392 ~sr~~rI~~gsg~ 404 (432)
T 2v3c_C 392 ASRIRRIARGSGT 404 (432)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCC
Confidence 9999999999964
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.51 E-value=3.6e-14 Score=137.94 Aligned_cols=90 Identities=21% Similarity=0.263 Sum_probs=62.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcccCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLMLNK 201 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~~~~ 201 (424)
..+|+++|.||||||||+|+|++.. +.+++.+++|.....+.+...+ ..+.+|||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999877 4578888888876665555544 469999999987542
Q ss_pred CCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461 202 SGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (424)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~ 234 (424)
. .........+..++.+|++++|+|+++
T Consensus 81 ~-----~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 S-----KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H-----HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c-----ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 001111223345678999999999975
No 199
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.51 E-value=2.1e-16 Score=160.24 Aligned_cols=249 Identities=14% Similarity=0.099 Sum_probs=137.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce-----------e--eEEEEE----------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-----------T--HEVLGV---------------- 181 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-----------~--~~~~~~---------------- 181 (424)
.+...|+++|.+||||||+++.|. |.++..++..+... + -.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998 76665554422110 0 001110
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR- 260 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~- 260 (424)
+...+.+++||||||..... ..+...+..... +..+|.+++|+|+..+.. .......+.+. .|+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~-----~~l~~el~~~~~-~i~pd~vllVvDa~~g~~--~~~~a~~~~~~-------~~i~ 243 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQE-----DSLFEEMLQVAN-AIQPDNIVYVMDASIGQA--CEAQAKAFKDK-------VDVA 243 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTC-----HHHHHHHHHHHH-HHCCSEEEEEEETTCCTT--HHHHHHHHHHH-------HCCC
T ss_pred HHHCCCcEEEEeCCCCcccc-----hhHHHHHHHHHh-hhcCceEEEEEecccccc--HHHHHHHHHhh-------cCce
Confidence 01156789999999986421 111111222222 226899999999976432 22222223221 354
Q ss_pred EEEEecCCCCCChhhHHHHHHHHh-------------cCCCCCeEEEEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCc
Q 014461 261 VLCMNKVDLVTKKKDLLKVAEQFK-------------HLPGYERIFMTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTM 326 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~~~~~~~~~~-------------~~~~~~~~~~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~ 326 (424)
.+|+||+|..............+. ....+.+.+++|+..|.| +++|++++.+...+..........
T Consensus 244 gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~~~~~~~~l~~k~~ 323 (504)
T 2j37_W 244 SVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLK 323 (504)
T ss_dssp CEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTTTTCCCTTTTTSCT
T ss_pred EEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999998754333333333221 111233456689999999 999999998762110101111111
Q ss_pred chhhHHHHHHHHHHHHHH--------hhcCccCCcceE--EEEEEEEeccCCeEEEEEEEE----eeCCCcc-cEEeccC
Q 014461 327 SEEVMKNISLEVVRERLL--------DHVHQEIPYSIE--HRLIDWKDLRDGSLRIEQHLI----TNKLSQR-KILVGKN 391 (424)
Q Consensus 327 ~~~~~~~~~~e~ire~l~--------~~l~~eip~~~~--~~~~~~~~~~~~~~~i~~~i~----~~~~s~k-~ivig~~ 391 (424)
+.+ +..+-+.+.+. ..+-..+|+... .....+...+++.-++.+.|. .||++|+ +.|||++
T Consensus 324 ~g~----~~l~d~~~~l~~~~~~G~~~~~~~~ipg~~~~~~~~~~~~~~~~~~~~~~~ii~smt~~Er~~~~~p~~~~~~ 399 (504)
T 2j37_W 324 HGQ----FTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQ 399 (504)
T ss_dssp TSG----GGGCCCHHHHHHCCCCCCCCSSCCCCSCCSCGGGCSCCCCCHHHHHHHHHHHHTTSCHHHHHCTTHHHHHHHC
T ss_pred cCC----CCHHHHHHHHHHHHHcCCHHHHHHhccccchhhccccccccChHhhhhhHHHHHhCCHHHhcCCCCCcccCCC
Confidence 111 01111122222 224557888532 111111111122234444555 7899999 9999999
Q ss_pred CchHHHHHHHHHH
Q 014461 392 GSKIGRIGVEANE 404 (424)
Q Consensus 392 g~~i~~i~~~~~~ 404 (424)
|+++++|+..++.
T Consensus 400 ~sr~~ria~gsg~ 412 (504)
T 2j37_W 400 PGRIQRVARGSGV 412 (504)
T ss_dssp THHHHHHHHHTTC
T ss_pred hHHHHHHHHhcCC
Confidence 9999999998875
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=142.09 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=98.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecC------CCCceeeEEEEE-EecCC--ccEEEEeCCCcccCCCCC-Chh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR------KTNTTTHEVLGV-MTKAD--TQICIFDTPGLMLNKSGY-SHK 207 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~------~~~tt~~~~~~~-~~~~~--~~i~l~DtpG~~~~~~~~-~~~ 207 (424)
-.++|+++|++|||||||+|+|+|......+. ...++.....+. +...+ ..+.+|||||+....... ...
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 35789999999999999999999876532111 111222111111 11122 258899999987542110 001
Q ss_pred hhhh----HHHHH--------Hhhccc--ccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 208 DVKV----RVESA--------WSAVNL--FEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 208 ~~~~----~~~~~--------~~~~~~--aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
.+.. .+... ...+.+ +++++++++.+ .++...+ ..++..+.. +.|+|+|+||+|+...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d---~~~lk~L~~----~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD---IEFMKRLHE----KVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHH---HHHHHHHTT----TSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHH---HHHHHHHhc----cCcEEEEEEcccCccH
Confidence 1100 11111 111233 34566666654 3443333 244555431 4789999999999864
Q ss_pred hhhHH---HHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhccCCCCCCCCCCcchhhHHHHHHHHHHHHHHhhcCc
Q 014461 273 KKDLL---KVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQ 349 (424)
Q Consensus 273 ~~~~~---~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~ 349 (424)
. .+. ..+.......+.. ++++||+++.++++++..| .+
T Consensus 183 ~-ev~~~k~~i~~~~~~~~i~-~~~~sa~~~~~v~~~~~~l-------------------------------------~~ 223 (418)
T 2qag_C 183 E-ECQQFKKQIMKEIQEHKIK-IYEFPETDDEEENKLVKKI-------------------------------------KD 223 (418)
T ss_dssp H-HHHHHHHHHHHHHHHHTCC-CCCCC-----------------------------------------------------
T ss_pred H-HHHHHHHHHHHHHHHcCCe-EEeCCCCCCcCHHHHHHHH-------------------------------------Hh
Confidence 3 222 2222222223443 7888998888776544333 34
Q ss_pred cCCcceEEEEEEEEeccCCeE----EEEEEEEeeCCCccc------EEeccCCchHHHHHHHH
Q 014461 350 EIPYSIEHRLIDWKDLRDGSL----RIEQHLITNKLSQRK------ILVGKNGSKIGRIGVEA 402 (424)
Q Consensus 350 eip~~~~~~~~~~~~~~~~~~----~i~~~i~~~~~s~k~------ivig~~g~~i~~i~~~~ 402 (424)
++||++......+.. .+..+ ++.+.+.|++++|.. ++||.+..-+++.....
T Consensus 224 ~iPfavv~s~~~~~~-~g~~vr~R~y~wg~i~Ven~~h~df~~Lr~~Li~~~~~dl~~~T~~~ 285 (418)
T 2qag_C 224 RLPLAVVGSNTIIEV-NGKRVRGRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNV 285 (418)
T ss_dssp -CCEEECC--------------CEECSSCEECC--CCSSTTTHHHHHHHTTSHHHHHHHHHHH
T ss_pred hCCcceeecceeEec-CCceeecccccceEEEecchhhCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455554322222221 11122 255678899999984 58899998888877654
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.50 E-value=4.1e-14 Score=138.39 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=64.0
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecC---------------------CccEEEEeCCCcc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKA---------------------DTQICIFDTPGLM 198 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~---------------------~~~i~l~DtpG~~ 198 (424)
++|+++|.||||||||+|+|++.. +.+++.+++|.....+..... +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999865 346777777776655554322 3469999999997
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~ 234 (424)
...... . ......+..++.+|++++|+|+++
T Consensus 81 ~~a~~~--~---~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKG--E---GLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSS--S---CTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccc--c---hHHHHHHHHHHhCCEEEEEEECCC
Confidence 643210 1 112334456788999999999975
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.49 E-value=3.1e-14 Score=133.00 Aligned_cols=172 Identities=18% Similarity=0.172 Sum_probs=100.4
Q ss_pred cccceEEEEEecCCCChhHHHHhHh-----CCcceeecCCCCceee------------EEEEEE----------------
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMV-----GTKVAAVSRKTNTTTH------------EVLGVM---------------- 182 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~-----~~~~~~~~~~~~tt~~------------~~~~~~---------------- 182 (424)
..+...++++|.+|||||||++.|. |.++..+...++.+.. ......
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR 90 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence 3456788999999999999999998 7777666655542110 000000
Q ss_pred -------------e-cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHH-HHHH-
Q 014461 183 -------------T-KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSR-VIRL- 246 (424)
Q Consensus 183 -------------~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~-~~~~- 246 (424)
. ..+.++.+|||||...+.. ...........+.. +++++++|++......+.. ....
T Consensus 91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~------~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~ 163 (262)
T 1yrb_A 91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFL------FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFA 163 (262)
T ss_dssp HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHH------HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhh------hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHH
Confidence 0 0134799999999864310 00001122234456 8999999986433222211 1111
Q ss_pred HHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHH-------HHH------------------hcCCCCCeEEEEecCC
Q 014461 247 IERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVA-------EQF------------------KHLPGYERIFMTSGLK 299 (424)
Q Consensus 247 l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~-------~~~------------------~~~~~~~~~~~iSA~~ 299 (424)
...... .+.|+++|+||+|+..... ...+.. +.+ .......+++++||++
T Consensus 164 ~~~~~~---~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~ 240 (262)
T 1yrb_A 164 LLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKT 240 (262)
T ss_dssp HHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTT
T ss_pred HHHhcc---cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecC
Confidence 111111 1378999999999976421 111111 111 1112222589999999
Q ss_pred CcChHHHHHHHHHhccCC
Q 014461 300 GAGLKALTQYLMEQAVQR 317 (424)
Q Consensus 300 g~gi~~L~~~i~~~l~~~ 317 (424)
|.|+++|+++|.+.++.+
T Consensus 241 ~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 241 REGFEDLETLAYEHYCTC 258 (262)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccc
Confidence 999999999999887644
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.45 E-value=6.9e-13 Score=140.96 Aligned_cols=117 Identities=20% Similarity=0.273 Sum_probs=78.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecC------------CCCceeeEEEEEEec-------CCccEEEE
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSR------------KTNTTTHEVLGVMTK-------ADTQICIF 192 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~------------~~~tt~~~~~~~~~~-------~~~~i~l~ 192 (424)
.+..+|+|+|+.++|||||..+|+... ...+.. .-+.|.......+.+ +++.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 356899999999999999999997311 111111 112222221112222 25689999
Q ss_pred eCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 193 DTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 193 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
||||+.++. ..+.+ .++.+|++|+|+|+..+...+...+++...+.+ .|.++++||+|...
T Consensus 91 DTPGHvDF~---------~Ev~~---aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~------lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDFT---------IEVER---SLRVLDGAVVVFCGTSGVEPQSETVWRQANKYG------VPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTCH---------HHHHH---HHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHT------CCEEEEEECSSSTT
T ss_pred eCCCCcccH---------HHHHH---HHHHhCeEEEEEECCCCCchhHHHHHHHHHHcC------CCeEEEEccccccC
Confidence 999998762 22333 456679999999999988877777777666654 78999999999865
No 204
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.40 E-value=4.9e-13 Score=127.70 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=78.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCcceeecCC-------CCceeeEEEEE-EecC--CccEEEEeCCCcccCCCC-CCh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK-------TNTTTHEVLGV-MTKA--DTQICIFDTPGLMLNKSG-YSH 206 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~-------~~tt~~~~~~~-~~~~--~~~i~l~DtpG~~~~~~~-~~~ 206 (424)
-.++|+++|++|||||||+|+|.+......+.. ..+......+. .... ...+.+|||||+...... ...
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 468899999999999999999988632212111 01111111111 2212 346899999998432110 000
Q ss_pred hhhhh----HHHHHHhhc----------ccccEEEEEEeCCCC-CCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 207 KDVKV----RVESAWSAV----------NLFEVLMVVFDVHRH-LTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 207 ~~~~~----~~~~~~~~~----------~~aD~vl~VvD~~~~-~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
..+.. .....+..+ ..+++++++.+.+.. +...+ .++++.+. ...|+++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~---~~~l~~l~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLD---VAFMKAIH----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHH---HHHHHHHT----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHH---HHHHHHHH----hcCCEEEEEEeCCCCC
Confidence 11111 111222211 123456666665432 33322 24555543 2368999999999986
Q ss_pred Chh--hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 272 KKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 272 ~~~--~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
..+ ...+....+....+. .++++||++| |++++++.+.+.+.
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhh
Confidence 422 122333444444455 4899999999 99999998887664
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.39 E-value=1.1e-12 Score=119.45 Aligned_cols=154 Identities=14% Similarity=0.226 Sum_probs=84.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc-----ceeecCCCCceee--------EEEEEEe--------------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK-----VAAVSRKTNTTTH--------EVLGVMT-------------------- 183 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~-----~~~~~~~~~tt~~--------~~~~~~~-------------------- 183 (424)
.+.++|+++|.+|||||||+++|+... .+.+...++++.+ .....+.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356899999999999999999998642 2222222221100 0000011
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
..+..++++||+|...... .+. ...+.++.++|+......... .... + ..|.++|
T Consensus 116 ~~~~d~~~id~~g~i~~~~-------------s~~--~~~~~~~~v~~~~~~~~~~~~-~~~~---~------~~~~iiv 170 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA-------------DFD--LGTHKRIVVISTTEGDDTIEK-HPGI---M------KTADLIV 170 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG-------------GCC--CSCSEEEEEEEGGGCTTTTTT-CHHH---H------TTCSEEE
T ss_pred cCCCCEEEEeCCCCccCcc-------------hhh--hccCcEEEEEecCcchhhHhh-hhhH---h------hcCCEEE
Confidence 0112567777777432100 000 123455677775322111111 0111 1 2578999
Q ss_pred EecCCCCCCh-hhHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 264 MNKVDLVTKK-KDLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 264 ~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+||+|+.... .......+.+.......+++++||++|.|+++++++|.+.+.
T Consensus 171 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 171 INKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp EECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 9999986421 122222223332223346999999999999999999987663
No 206
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.36 E-value=4.6e-13 Score=144.59 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=74.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcceeecC---------------CCCceeeEEEEEEec----------------C
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSR---------------KTNTTTHEVLGVMTK----------------A 185 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~---------------~~~tt~~~~~~~~~~----------------~ 185 (424)
.+..+|+++|++|+|||||+++|++........ ..+.|.......+.+ .
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 356899999999999999999998642211111 112222211111222 2
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+..+.||||||+.++. ... ...+..+|++|+|+|++++.......++..+... +.|+++|+|
T Consensus 97 ~~~i~liDTPG~~df~---------~~~---~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~------~~p~ilviN 158 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFS---------SEV---TAALRVTDGALVVVDTIEGVCVQTETVLRQALGE------RIKPVVVIN 158 (842)
T ss_dssp EEEEEEECCCCCCSSC---------HHH---HHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT------TCEEEEEEE
T ss_pred CceEEEEECcCchhhH---------HHH---HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc------CCCeEEEEE
Confidence 5679999999997652 112 2345678999999999877655544433333322 478999999
Q ss_pred cCCCC
Q 014461 266 KVDLV 270 (424)
Q Consensus 266 K~Dl~ 270 (424)
|+|+.
T Consensus 159 K~D~~ 163 (842)
T 1n0u_A 159 KVDRA 163 (842)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 99986
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.32 E-value=3.4e-13 Score=132.40 Aligned_cols=194 Identities=13% Similarity=0.136 Sum_probs=92.1
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCc
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGL 197 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~ 197 (424)
....+.+|+++|.||||||||+|+|++... .+++.+++|.....+.+...+ .++.+|||||+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCc
Confidence 345578999999999999999999999876 678889999877666655443 24899999999
Q ss_pred ccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHH
Q 014461 198 MLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLL 277 (424)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~ 277 (424)
...... ........+..++.+|++++|+|+++. ..+.. +... ..| +|++|.... +...
T Consensus 97 ~~~as~-----~~glg~~~l~~ir~aD~Il~VvD~~~~-----~~i~~-v~~~------~dP----~~di~~i~~-El~l 154 (396)
T 2ohf_A 97 VKGAHN-----GQGLGNAFLSHISACDGIFHLTRAFED-----DDITH-VEGS------VDP----IRDIEIIHE-ELQL 154 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC------------------------CTT----HHHHHHHHH-HHHH
T ss_pred ccccch-----hhHHHHHHHHHHHhcCeEEEEEecCCC-----cchhh-hcCC------CCh----HHHHHHhhh-hhhh
Confidence 764321 011112344567889999999999631 11111 1110 123 455554432 1111
Q ss_pred HHHHHHhcCCCCCeEEEEe--cCCCcChHHHHHHHHHhccCC-CCCCCCCCcchhhHHHHHHHHHHHHHHhhcCccCCcc
Q 014461 278 KVAEQFKHLPGYERIFMTS--GLKGAGLKALTQYLMEQAVQR-PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYS 354 (424)
Q Consensus 278 ~~~~~~~~~~~~~~~~~iS--A~~g~gi~~L~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~e~ire~l~~~l~~eip~~ 354 (424)
...+.+............| ++.+.+..++++.+.+.+.++ ++......++.+ ..+++ +.++....+++||.
T Consensus 155 ~d~~~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~-----e~e~i-~~~~llt~KPviy~ 228 (396)
T 2ohf_A 155 KDEEMIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDK-----EIEVL-NKHLFLTSKPMVYL 228 (396)
T ss_dssp HHHHHHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHH-----HHHHH-HHHCCGGGSCEEEE
T ss_pred hhHHHHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHH-----HHHHH-HHHHHHhCCceEEE
Confidence 1111111111111122344 577788999999999998776 432100112222 12344 45555667778776
Q ss_pred eEE
Q 014461 355 IEH 357 (424)
Q Consensus 355 ~~~ 357 (424)
+.+
T Consensus 229 ~Nv 231 (396)
T 2ohf_A 229 VNL 231 (396)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 208
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.28 E-value=5.2e-11 Score=117.90 Aligned_cols=193 Identities=17% Similarity=0.158 Sum_probs=113.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc----ceeecCCCCceeeEEEEEEecC-CccEEEEeCCCcccCCCCCChhhhhh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK----VAAVSRKTNTTTHEVLGVMTKA-DTQICIFDTPGLMLNKSGYSHKDVKV 211 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~----~~~~~~~~~tt~~~~~~~~~~~-~~~i~l~DtpG~~~~~~~~~~~~~~~ 211 (424)
.....++++|++|||||||+|.|.|.. .........+|+... ++... ..++.++|+||+.... .....
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~--v~q~~~~~~ltv~D~~g~~~~~-----~~~~~ 139 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPNIPNVVFWDLPGIGSTN-----FPPDT 139 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSSCTTEEEEECCCGGGSS-----CCHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEE--eccccccCCeeehHhhcccchH-----HHHHH
Confidence 456789999999999999999999832 211222222333211 22222 2368999999986431 11111
Q ss_pred HHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC-----------ChhhHHHHH
Q 014461 212 RVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT-----------KKKDLLKVA 280 (424)
Q Consensus 212 ~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~-----------~~~~~~~~~ 280 (424)
.+... .+...+..++ ++... .......+...+... +.|+++|+||.|+.- .+..+.+.+
T Consensus 140 ~L~~~--~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l 209 (413)
T 1tq4_A 140 YLEKM--KFYEYDFFII-ISATR-FKKNDIDIAKAISMM------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDI 209 (413)
T ss_dssp HHHHT--TGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHH
T ss_pred HHHHc--CCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHH
Confidence 12111 2334455555 77642 233344555566554 378999999998741 123344444
Q ss_pred HHHh-----cC-CCCCeEEEEec--CCCcChHHHHHHHHHhccCCCCCCC-----C-CCcchhhHHHHHHHHHHHHHHhh
Q 014461 281 EQFK-----HL-PGYERIFMTSG--LKGAGLKALTQYLMEQAVQRPWSED-----P-LTMSEEVMKNISLEVVRERLLDH 346 (424)
Q Consensus 281 ~~~~-----~~-~~~~~~~~iSA--~~g~gi~~L~~~i~~~l~~~~~~~~-----~-~~~~~~~~~~~~~e~ire~l~~~ 346 (424)
..+. +. .....+|++|+ .++.|+++|.+.|.+.++++++.+. . ...+.+..+....+.+++..+..
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~i~~~a~~a 289 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQRIWLEGFAA 289 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4442 22 23446899999 6777899999999999998875542 2 22223444555667777766544
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1.2e-11 Score=121.66 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=71.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEEecCC-----------------ccEEEEeCCCcc
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVMTKAD-----------------TQICIFDTPGLM 198 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~-----------------~~i~l~DtpG~~ 198 (424)
...+.+++++|.||||||||+|+|++...+.+++.|++|.....+.+...+ ..+.++||||+.
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 345789999999999999999999998876789999999888777766554 358999999987
Q ss_pred cCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC
Q 014461 199 LNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR 234 (424)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~ 234 (424)
...... +.+ ....+..+..+|++++|+|+.+
T Consensus 97 ~~~s~~--e~L---~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTG--VGL---GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSS--SSS---CHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHH--HHH---HHHHHHHHHHHHHHHHHHhccc
Confidence 543211 111 1223455678899999999864
No 210
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.24 E-value=8.7e-12 Score=121.33 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=77.5
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCC--------CchHHHHHHHHHhccC
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLT--------SPDSRVIRLIERMGKQ 253 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~--------~~~~~~~~~l~~~~~~ 253 (424)
+..++..+.+|||+|....... ....+.+++++|+|+|+++.-+ .....+..++..+...
T Consensus 188 ~~~~~~~l~iwDt~GQe~~r~~------------w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 188 FTFKDLHFKMFDVGGQRSERKK------------WIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp EEETTEEEEEEEECCSGGGGGG------------GGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred EeeCCeeEEEEeCCCchhhhHH------------HHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 4456778999999998754321 1235678999999999975211 1223455566555432
Q ss_pred -CCCCCcEEEEEecCCCCCCh----------------hhHHHHHH----HHhcC-----CCCCeEEEEecCCCcChHHHH
Q 014461 254 -APPKQKRVLCMNKVDLVTKK----------------KDLLKVAE----QFKHL-----PGYERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 254 -~~~~~p~ilV~NK~Dl~~~~----------------~~~~~~~~----~~~~~-----~~~~~~~~iSA~~g~gi~~L~ 307 (424)
...+.|+++|+||+|+...+ ....+..+ .+... .....++++||++|.||+++|
T Consensus 256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF 335 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVF 335 (353)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHH
T ss_pred ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHH
Confidence 22458999999999985211 11111111 11122 112258899999999999999
Q ss_pred HHHHHhcc
Q 014461 308 QYLMEQAV 315 (424)
Q Consensus 308 ~~i~~~l~ 315 (424)
+++.+.+.
T Consensus 336 ~~v~~~i~ 343 (353)
T 1cip_A 336 DAVTDVII 343 (353)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 211
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=5.5e-12 Score=120.08 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=82.3
Q ss_pred CCCCcEEEEeCCCCccCCC-C--------------------CCCCCCCccC----hhhHHHHHHhcCCeEEEeec-cccc
Q 014461 43 ENDCDSVFDSSYFRIPTID-D--------------------PQNNNAAKKQ----EPTWDEKYRERTDRIVFGEE-AQKG 96 (424)
Q Consensus 43 ~~~~d~vie~~dar~p~~~-~--------------------~k~Dl~~~~~----~~~~~~~~~~~~~~i~f~~~-~~~~ 96 (424)
+..+|.++++.|++.|.++ + ||+||++++. .+.|..+|...|+.+++.++ ++.|
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g 163 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDS 163 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTT
T ss_pred HHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 4578999999999987776 3 2669988754 68899999999999999988 7777
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC-----
Q 014461 97 KLRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT----- 171 (424)
Q Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~----- 171 (424)
...+ .....+..++++|++|||||||+|.|.+.....++...
T Consensus 164 ~~~L---------------------------------~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~ 210 (307)
T 1t9h_A 164 LADI---------------------------------IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGR 210 (307)
T ss_dssp CTTT---------------------------------GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------
T ss_pred HHHH---------------------------------HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCC
Confidence 7766 11123568999999999999999999986543332222
Q ss_pred --CceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 172 --~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
++|+.... +... ...++||||+..+
T Consensus 211 G~~tt~~~~~--~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 211 GKHTTRHVEL--IHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp ----CCCCCE--EEET--TEEEESSCSCSSC
T ss_pred CcccccHHHH--hhcC--CEEEecCCCcccc
Confidence 34443221 1121 3489999998754
No 212
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.09 E-value=5.8e-11 Score=115.20 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCCCcEEEEeCCCCccCCC---------------------CCCCCCCCccC---hhhHHHHHHhcCCeEEEeec-ccccc
Q 014461 43 ENDCDSVFDSSYFRIPTID---------------------DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGK 97 (424)
Q Consensus 43 ~~~~d~vie~~dar~p~~~---------------------~~k~Dl~~~~~---~~~~~~~~~~~~~~i~f~~~-~~~~~ 97 (424)
...+|.++.+ +|+.|.++ .||+||++++. .+.|..+|...|+.+++.++ ++.|.
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl 206 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGL 206 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTH
T ss_pred HhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCH
Confidence 3467777755 66666554 33779988765 66899999999999999998 77777
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcc-eeecCCC-----
Q 014461 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKT----- 171 (424)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~-~~~~~~~----- 171 (424)
..+ . .. ..+..++++|++|||||||+|.|.|... ...+...
T Consensus 207 ~~L----------~--------~~---------------~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 207 KPL----------E--------EA---------------LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGL 253 (358)
T ss_dssp HHH----------H--------HH---------------HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------
T ss_pred HHH----------H--------Hh---------------cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCC
Confidence 666 0 00 1245789999999999999999998654 3222211
Q ss_pred --CceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 172 --NTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 172 --~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
++|+....+.+..+ ..++||||+.++
T Consensus 254 g~~tt~~~~i~~v~q~---~~l~dtpgv~e~ 281 (358)
T 2rcn_A 254 GQHTTTAARLYHFPHG---GDVIDSPGVREF 281 (358)
T ss_dssp -----CCCEEEECTTS---CEEEECHHHHTC
T ss_pred CccceEEEEEEEECCC---CEecCcccHHHh
Confidence 13333333333222 267999998653
No 213
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.06 E-value=2.6e-10 Score=109.44 Aligned_cols=123 Identities=12% Similarity=0.098 Sum_probs=76.6
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC-------CCC-CCchHHHHHHHHHhccC
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH-------RHL-TSPDSRVIRLIERMGKQ 253 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~-------~~~-~~~~~~~~~~l~~~~~~ 253 (424)
+..++..+.+|||+|....+.. ....+++++++|+|+|.+ +.. .........++..+...
T Consensus 162 ~~~~~v~l~iwDtgGQe~~R~~------------w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~ 229 (327)
T 3ohm_A 162 FDLQSVIFRMVDVGGQRSERRK------------WIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY 229 (327)
T ss_dssp EEETTEEEEEEEECCSHHHHTT------------GGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS
T ss_pred EEeeceeeEEEEcCCchhHHHH------------HHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh
Confidence 5556788999999998643211 123568899999999875 211 12223455555554332
Q ss_pred -CCCCCcEEEEEecCCCCCCh-----------------hhHHHHH----HHHhcCC----CCCeEEEEecCCCcChHHHH
Q 014461 254 -APPKQKRVLCMNKVDLVTKK-----------------KDLLKVA----EQFKHLP----GYERIFMTSGLKGAGLKALT 307 (424)
Q Consensus 254 -~~~~~p~ilV~NK~Dl~~~~-----------------~~~~~~~----~~~~~~~----~~~~~~~iSA~~g~gi~~L~ 307 (424)
...+.|+++++||+|+...+ ....+.. ..+.... ....++++||+++.||+.+|
T Consensus 230 ~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF 309 (327)
T 3ohm_A 230 PWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVF 309 (327)
T ss_dssp GGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHH
T ss_pred hccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHH
Confidence 22458999999999985421 1112111 1222211 11236789999999999999
Q ss_pred HHHHHhccC
Q 014461 308 QYLMEQAVQ 316 (424)
Q Consensus 308 ~~i~~~l~~ 316 (424)
+.+.+.+..
T Consensus 310 ~~v~~~Il~ 318 (327)
T 3ohm_A 310 AAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887643
No 214
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.96 E-value=1.5e-09 Score=103.43 Aligned_cols=120 Identities=18% Similarity=0.187 Sum_probs=79.7
Q ss_pred CCCCcEEEEeCCCCccC--------------------CC-CCCCCCCCcc---ChhhHHHHHHhcCCeEEEeec-ccccc
Q 014461 43 ENDCDSVFDSSYFRIPT--------------------ID-DPQNNNAAKK---QEPTWDEKYRERTDRIVFGEE-AQKGK 97 (424)
Q Consensus 43 ~~~~d~vie~~dar~p~--------------------~~-~~k~Dl~~~~---~~~~~~~~~~~~~~~i~f~~~-~~~~~ 97 (424)
...+|.++.+-|++.|. +. .||+||.+.. ....|..++...++.++++|+ ++.|.
T Consensus 77 ~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi 156 (302)
T 2yv5_A 77 VANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGI 156 (302)
T ss_dssp EESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred HHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCH
Confidence 33677777777776554 33 4688998765 257788888888888999999 88887
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCCC------
Q 014461 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKT------ 171 (424)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~------ 171 (424)
..+ .....+..++++|++|||||||+|.|. ......+...
T Consensus 157 ~~L---------------------------------~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G 202 (302)
T 2yv5_A 157 DEL---------------------------------VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERG 202 (302)
T ss_dssp HHH---------------------------------HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-------
T ss_pred HHH---------------------------------HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCC
Confidence 766 111234568999999999999999998 5433222222
Q ss_pred -CceeeEEEEEEecCCccEEEEeCCCccc
Q 014461 172 -NTTTHEVLGVMTKADTQICIFDTPGLML 199 (424)
Q Consensus 172 -~tt~~~~~~~~~~~~~~i~l~DtpG~~~ 199 (424)
++|+..... ... .--.++||||+..
T Consensus 203 ~~~t~~~~~~--~~~-~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 203 RHTTTGVRLI--PFG-KGSFVGDTPGFSK 228 (302)
T ss_dssp --CCCCEEEE--EET-TTEEEESSCCCSS
T ss_pred CCceeeEEEE--EcC-CCcEEEECcCcCc
Confidence 244433221 111 2247899999864
No 215
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.96 E-value=2.2e-09 Score=103.38 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--------CCCchHHHHHHHHHhcc
Q 014461 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGK 252 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--------~~~~~~~~~~~l~~~~~ 252 (424)
.+..++..+.+|||+|.... -......++.++++|+|+|.++- ..........++..+..
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~------------R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSE------------RKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp EEESSSCEEEEEECCSCHHH------------HHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred EEEeeeeeeccccCCCcccc------------cccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 35567788999999998532 11223457899999999999720 11222344455554432
Q ss_pred C-CCCCCcEEEEEecCCCCC
Q 014461 253 Q-APPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 253 ~-~~~~~p~ilV~NK~Dl~~ 271 (424)
. ...+.|+++++||+|+..
T Consensus 223 ~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp CGGGTTSEEEEEEECHHHHH
T ss_pred hhccCCCeEEEEEECchhhh
Confidence 2 224589999999999854
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=1.7e-09 Score=107.08 Aligned_cols=126 Identities=16% Similarity=0.191 Sum_probs=67.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCccee---ecCCCCceeeEEEEEEecCC--ccEEEEeCCCcccCCCC-CChhh----h
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAA---VSRKTNTTTHEVLGVMTKAD--TQICIFDTPGLMLNKSG-YSHKD----V 209 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~---~~~~~~tt~~~~~~~~~~~~--~~i~l~DtpG~~~~~~~-~~~~~----~ 209 (424)
++++++|++|+|||||+|.|+|..+.. ....++.++..........+ ..+.++|+||+...... ..... +
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 449999999999999999999875321 11123444433322232222 26899999998643110 00000 1
Q ss_pred hhHHHHHHhhc----------cccc---EEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 210 KVRVESAWSAV----------NLFE---VLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 210 ~~~~~~~~~~~----------~~aD---~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
...+...+... .+++ +++|++|+..+++..+..+.+.| . .+.|+|+|+||+|....
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L---~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL---D----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT---C----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH---h----hCCCEEEEEcchhccch
Confidence 11122222211 1222 46677787666665554444433 3 24789999999999864
No 217
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.86 E-value=1.2e-08 Score=95.63 Aligned_cols=126 Identities=13% Similarity=0.251 Sum_probs=68.8
Q ss_pred eEEEEEecCCCChhHHHHhHhCCcceeec-------CCCCceeeEEEEEEecC---CccEEEEeCCCcccCCCCCC-hhh
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTKVAAVS-------RKTNTTTHEVLGVMTKA---DTQICIFDTPGLMLNKSGYS-HKD 208 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~~~~~~-------~~~~tt~~~~~~~~~~~---~~~i~l~DtpG~~~~~~~~~-~~~ 208 (424)
++++++|++|+|||||+|.|+|......+ +.+.++.....+.+... ...+.++|+||+........ ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68999999999999999999975432211 11222222222222221 13679999999865322111 111
Q ss_pred hhhHHH----HHH-h----------hcccccEEEEEEeCC-CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCC
Q 014461 209 VKVRVE----SAW-S----------AVNLFEVLMVVFDVH-RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTK 272 (424)
Q Consensus 209 ~~~~~~----~~~-~----------~~~~aD~vl~VvD~~-~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~ 272 (424)
+..... ..+ . .+..+++.++++|.. .++...+..+...+.+ ..++++|+||+|....
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-------~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-------VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-------TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-------cCcEEEEEeccccCCH
Confidence 111111 111 0 123458889999964 4555444444444433 1679999999998874
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.82 E-value=6.4e-09 Score=107.14 Aligned_cols=105 Identities=21% Similarity=0.267 Sum_probs=61.8
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCCcceeecCCCCceeeEEEEEE-------ecCCccEEEEeCCCcccCCCCCChhh
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRKTNTTTHEVLGVM-------TKADTQICIFDTPGLMLNKSGYSHKD 208 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~~~tt~~~~~~~~-------~~~~~~i~l~DtpG~~~~~~~~~~~~ 208 (424)
..+..+|+|+|.||+|||||+|+|+|..... +.+++|+..+.+.+ ...+..+.++||||+..........+
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~ 112 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND 112 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH
Confidence 3456889999999999999999999987531 33444433333332 23567899999999986432111111
Q ss_pred hhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHH
Q 014461 209 VKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIE 248 (424)
Q Consensus 209 ~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~ 248 (424)
. ..+ ++..+- ++ ++|+|+...++..+...+.++.
T Consensus 113 ~-~~f--ala~ll-ss--~lv~n~~~~i~~~dl~~l~~v~ 146 (592)
T 1f5n_A 113 S-WIF--ALAVLL-SS--TFVYNSIGTINQQAMDQLYYVT 146 (592)
T ss_dssp H-HHH--HHHHHH-CS--EEEEEEESCSSHHHHHTTHHHH
T ss_pred H-HHH--HHHHHh-cC--eEEEECCCCccHHHHHHHHHHH
Confidence 1 111 111111 23 5667776666665554444433
No 219
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.76 E-value=3.6e-08 Score=93.91 Aligned_cols=137 Identities=18% Similarity=0.169 Sum_probs=81.5
Q ss_pred HHHHhHhCCcceeecCCCCceeeEEEEEEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 154 SIINYMVGTKVAAVSRKTNTTTHEVLGVMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 154 tLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
+|+++++...+.. .....|.-+...... ..+..+.+||| +..+.. + . ...+..+|++++|+|++
T Consensus 32 sl~~~~~~~~f~~-~~~~pTiGd~~~~~~-~~~~~~~iwD~--qer~~~------l---~---~~~~~~ad~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRL-QNLKIYVGDRVEYTP-DETGSGVIENV--LHRKNL------L---T---KPHVANVDQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTT-TTCCCCTTCEEEEEC-CCSSSEEEEEE--CCCSCE------E---T---TTTEESCCEEEEEECSS
T ss_pred cEEEEEEcccccc-cCCCCCCccEEEEEE-cCCCeEEEEEE--ccccce------e---e---ccccccCCEEEEEEeCC
Confidence 5677766655531 111112112222112 22347999999 332211 1 0 13578899999999998
Q ss_pred CCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEecCCCcChHHHHHHHH
Q 014461 234 RHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTSGLKGAGLKALTQYLM 311 (424)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L~~~i~ 311 (424)
++.. ....+..|+..+.. .+.|+++|+||+|+.+... ...+..+.+... ..++++||++|.|++++++.+.
T Consensus 96 ~~~~-s~~~l~~~l~~~~~---~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~---~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 96 MPET-STYIIDKFLVLAEK---NELETVMVINKMDLYDEDDLRKVRELEEIYSGL---YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TTCC-CHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT---SCEEECCTTTCTTHHHHHHHHS
T ss_pred CCCC-CHHHHHHHHHHHHH---CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh---CcEEEEECCCCcCHHHHHHHhc
Confidence 6532 22344555554432 2589999999999976432 123333333322 3599999999999999999886
Q ss_pred Hh
Q 014461 312 EQ 313 (424)
Q Consensus 312 ~~ 313 (424)
..
T Consensus 169 ge 170 (301)
T 1u0l_A 169 GK 170 (301)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 220
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.75 E-value=1e-08 Score=100.03 Aligned_cols=122 Identities=11% Similarity=0.170 Sum_probs=73.3
Q ss_pred EEecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCC--------CCchHHHHHHHHHhcc
Q 014461 181 VMTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHL--------TSPDSRVIRLIERMGK 252 (424)
Q Consensus 181 ~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~--------~~~~~~~~~~l~~~~~ 252 (424)
.+..++..+.+|||+|........ ...+..++++|||+|+++.- .........++..+..
T Consensus 195 ~~~~~~~~l~i~Dt~Gq~~~r~~w------------~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 195 DFEIKNVPFKMVDVGGQRSERKRW------------FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp EEEETTEEEEEEEECC-------C------------TTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred EeeeCCeEEEEEeccchhhhhhhH------------HHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 345567889999999986543211 23467889999999997521 1122344455555433
Q ss_pred C-CCCCCcEEEEEecCCCCCCh-----------------hhHHHHHH----HHhcCC-----CCCeEEEEecCCCcChHH
Q 014461 253 Q-APPKQKRVLCMNKVDLVTKK-----------------KDLLKVAE----QFKHLP-----GYERIFMTSGLKGAGLKA 305 (424)
Q Consensus 253 ~-~~~~~p~ilV~NK~Dl~~~~-----------------~~~~~~~~----~~~~~~-----~~~~~~~iSA~~g~gi~~ 305 (424)
. ...+.|+|+|+||+|+...+ ....+... .|.... ....++++||++|.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 2 22458999999999985211 11122111 121211 112478999999999999
Q ss_pred HHHHHHHhc
Q 014461 306 LTQYLMEQA 314 (424)
Q Consensus 306 L~~~i~~~l 314 (424)
+|+++.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.71 E-value=1.8e-08 Score=95.98 Aligned_cols=121 Identities=21% Similarity=0.151 Sum_probs=74.4
Q ss_pred CCCCcEEEEeCCCCccCC--------------------C-CCCCCCCCccC---hhhHHHHHHhcCCeEEEeec-ccccc
Q 014461 43 ENDCDSVFDSSYFRIPTI--------------------D-DPQNNNAAKKQ---EPTWDEKYRERTDRIVFGEE-AQKGK 97 (424)
Q Consensus 43 ~~~~d~vie~~dar~p~~--------------------~-~~k~Dl~~~~~---~~~~~~~~~~~~~~i~f~~~-~~~~~ 97 (424)
...+|+++.+-|++.|.+ . .||+||.+... .+.|...+... ..++.+|+ ++.|.
T Consensus 82 ~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg~gv 160 (301)
T 1u0l_A 82 VANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTGMGI 160 (301)
T ss_dssp EESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTCTTH
T ss_pred cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCCcCH
Confidence 446788888888776543 2 45788876543 45677666554 66777888 77777
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhcccceEEEEEecCCCChhHHHHhHhCCcceeecCC-------
Q 014461 98 LRIFQEEEEERKHRALAKALLQAALERQEEEEEEVKEEDQKSVAVGIIGAPNAGKSSIINYMVGTKVAAVSRK------- 170 (424)
Q Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~vvG~~~~GKStLin~l~~~~~~~~~~~------- 170 (424)
.++ +. ......++++|++|+|||||+|.|.|......+..
T Consensus 161 ~~l-----------------f~----------------~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g 207 (301)
T 1u0l_A 161 EEL-----------------KE----------------YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRG 207 (301)
T ss_dssp HHH-----------------HH----------------HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----------
T ss_pred HHH-----------------HH----------------HhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCC
Confidence 665 11 11245689999999999999999998654322221
Q ss_pred CCceeeEEEEEEecCCccEEEEeCCCcccC
Q 014461 171 TNTTTHEVLGVMTKADTQICIFDTPGLMLN 200 (424)
Q Consensus 171 ~~tt~~~~~~~~~~~~~~i~l~DtpG~~~~ 200 (424)
..+|+.... .... .--.++|+||+...
T Consensus 208 ~~~t~~~~~--~~~~-~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 208 RHTTTTAQL--LKFD-FGGYVVDTPGFANL 234 (301)
T ss_dssp --CCCSCCE--EECT-TSCEEESSCSSTTC
T ss_pred CCceeeeEE--EEcC-CCCEEEECcCCCcc
Confidence 123332211 1111 12378999998643
No 222
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.63 E-value=5.8e-10 Score=111.33 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=114.1
Q ss_pred cceEEEEEecCCCChhHHHHhHh-------CCcceeecCCCCcee--------------eEEEE---------------E
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV-------GTKVAAVSRKTNTTT--------------HEVLG---------------V 181 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~-------~~~~~~~~~~~~tt~--------------~~~~~---------------~ 181 (424)
++..|+++|.+|+||||++..|. |.++..+...++... +.... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45788999999999999999987 555443333321110 00000 0
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-E
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-R 260 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~ 260 (424)
....++.++++||||..... ......+.. ...+..+|.+++|+|+..+ .. . ...++.+... .+ .
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~-----~~l~~~L~~-~~~~~~p~~vllVvda~~g-~~-~---~~~~~~f~~~----l~i~ 243 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVD-----EAMMDEIKQ-VHASINPVETLFVVDAMTG-QD-A---ANTAKAFNEA----LPLT 243 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTC-----HHHHHHHHH-HHHHSCCSEEEEEEETTBC-TT-H---HHHHHHHHHH----SCCC
T ss_pred HHhCCCCEEEEECCCccccc-----HHHHHHHHH-HHHhhcCcceeEEeecchh-HH-H---HHHHHHHhcc----CCCe
Confidence 01246789999999975321 111111111 1223467899999999643 11 1 2223333211 22 3
Q ss_pred EEEEecCCCCCChhhHHHHHHHHhcC-------CCCCeEE------EEecCCCcC-hHHHHHHHHHhccCCCCCCCCCCc
Q 014461 261 VLCMNKVDLVTKKKDLLKVAEQFKHL-------PGYERIF------MTSGLKGAG-LKALTQYLMEQAVQRPWSEDPLTM 326 (424)
Q Consensus 261 ilV~NK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~------~iSA~~g~g-i~~L~~~i~~~l~~~~~~~~~~~~ 326 (424)
-+|+||+|..............+..- .....+. .+|+..|.| +..|++.+.+.+....
T Consensus 244 gvVlnK~D~~~~~g~~l~i~~~~~~Pi~~iG~ge~v~dl~~f~p~~~a~~l~g~gD~~~Lie~a~~~~~~~~-------- 315 (433)
T 2xxa_A 244 GVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQ-------- 315 (433)
T ss_dssp CEEEECTTSSSCCTHHHHHHHHHCCCEEEEECSSSSSCEEECCHHHHHHHHHCCCTTHHHHHHHHHHHHHHH--------
T ss_pred EEEEecCCCCccHHHHHHHHHHHCCCeEEEecCCCchhhhhcChHHHHHHHhCccchHHHHHHHHHhhhhhh--------
Confidence 46899999864333333333333100 0001111 124445555 6666666554321100
Q ss_pred chhhH-HHHHH-HHHHHHHHhhcCc------------cCCcceEEEEEEEEe--ccCCeEEEEEEEE----eeCCCcccE
Q 014461 327 SEEVM-KNISL-EVVRERLLDHVHQ------------EIPYSIEHRLIDWKD--LRDGSLRIEQHLI----TNKLSQRKI 386 (424)
Q Consensus 327 ~~~~~-~~~~~-e~ire~l~~~l~~------------eip~~~~~~~~~~~~--~~~~~~~i~~~i~----~~~~s~k~i 386 (424)
.++.. +...- +..++.+++.+.+ ++|+.... ...+.. .++...++.+.|. .||++++.|
T Consensus 316 ~~~l~~k~~~~~~f~~~d~~~ql~~~~~~g~~~~~~~~lPg~~~~-~~~~~~~~~~~~~~~~~~ii~smt~~er~~~~~~ 394 (433)
T 2xxa_A 316 AEKLASKLKKGDGFDLNDFLEQLRQMKNMGGMASLMGKLPGMGQI-PDNVKSQMDDKVLVRMEAIINSMTMKERAKPEII 394 (433)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHSCSSCHHHHCC----------------CHHHHHHHHHHHHTSCHHHHHCGGGC
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCchhhhhcCcCcchh-hhhhhccccHHHHHHHHHHHHcCCHHHhcCcccc
Confidence 00000 00001 1333344444433 78986432 123321 1111234555565 788888877
Q ss_pred EeccCCchHHHHHHHHHH
Q 014461 387 LVGKNGSKIGRIGVEANE 404 (424)
Q Consensus 387 vig~~g~~i~~i~~~~~~ 404 (424)
+|+++++|+..++.
T Consensus 395 ----~~sr~~ria~gsg~ 408 (433)
T 2xxa_A 395 ----KGSRKRRIAAGSGM 408 (433)
T ss_dssp ----CHHHHHHHHHHHTC
T ss_pred ----CHHHHHHHHccCCC
Confidence 79999999998873
No 223
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.62 E-value=4.2e-08 Score=95.31 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=71.8
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCC--------CCCCchHHHHHHHHHhccC-CCC
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHR--------HLTSPDSRVIRLIERMGKQ-APP 256 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~--------~~~~~~~~~~~~l~~~~~~-~~~ 256 (424)
...+.+|||+|...+... ....++.++++|+|+|.+. ........+..++..+... ...
T Consensus 182 ~v~l~iwDtaGQe~~r~~------------~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRK------------WIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFE 249 (354)
T ss_dssp --EEEEEEECCSTTGGGG------------TGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGS
T ss_pred ceeeEEEECCCchhhhHH------------HHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccC
Confidence 467899999998754321 1235678999999999861 1122233455566554432 124
Q ss_pred CCcEEEEEecCCCCCChh---------------------hHHHHHHHH-hc----C----------CCCCeEEEEecCCC
Q 014461 257 KQKRVLCMNKVDLVTKKK---------------------DLLKVAEQF-KH----L----------PGYERIFMTSGLKG 300 (424)
Q Consensus 257 ~~p~ilV~NK~Dl~~~~~---------------------~~~~~~~~~-~~----~----------~~~~~~~~iSA~~g 300 (424)
+.|+++|+||+|+...+. ...+....+ .. . .....++++||++|
T Consensus 250 ~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~ 329 (354)
T 2xtz_A 250 KTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQ 329 (354)
T ss_dssp SCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCH
T ss_pred CCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecc
Confidence 589999999999843110 001112222 11 0 11123689999999
Q ss_pred cChHHHHHHHHHhc
Q 014461 301 AGLKALTQYLMEQA 314 (424)
Q Consensus 301 ~gi~~L~~~i~~~l 314 (424)
.||+++|+++.+.+
T Consensus 330 ~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 330 KLVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999988765
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.62 E-value=3.1e-07 Score=91.24 Aligned_cols=148 Identities=20% Similarity=0.210 Sum_probs=81.7
Q ss_pred cceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce-------------eeEEEEE----------------E
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT-------------THEVLGV----------------M 182 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt-------------~~~~~~~----------------~ 182 (424)
++..|+++|.+|+||||++..|. |.++..+...+... ....... .
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999987 44443333221100 0000000 0
Q ss_pred ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (424)
Q Consensus 183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il 262 (424)
...++.++++||||..... ......+... .....+|.+++|+|+..+ ...... ...+... -.+..+
T Consensus 179 ~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i-~~~~~pd~vlLVvDA~~g--q~a~~~---a~~f~~~---~~i~gV 244 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKED-----KALIEEMKQI-SNVIHPHEVILVIDGTIG--QQAYNQ---ALAFKEA---TPIGSI 244 (443)
T ss_dssp HHTTCSEEEEECCCCSSCC-----HHHHHHHHHH-HHHHCCSEEEEEEEGGGG--GGHHHH---HHHHHHS---CTTEEE
T ss_pred HhCCCCEEEEECCCcccch-----HHHHHHHHHH-HHhhcCceEEEEEeCCCc--hhHHHH---HHHHHhh---CCCeEE
Confidence 1135789999999975321 1111222222 223357999999999642 112222 2333211 134678
Q ss_pred EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L 306 (424)
|+||+|.......... +....+.+ +..++. |+++++|
T Consensus 245 IlTKlD~~~~gG~~ls----~~~~~g~P-I~fig~--Ge~vddL 281 (443)
T 3dm5_A 245 IVTKLDGSAKGGGALS----AVAATGAP-IKFIGT--GEKIDDI 281 (443)
T ss_dssp EEECCSSCSSHHHHHH----HHHTTCCC-EEEEEC--SSSTTCE
T ss_pred EEECCCCcccccHHHH----HHHHHCCC-EEEEEc--CCChHHh
Confidence 9999998764333222 22234554 666764 8877664
No 225
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.57 E-value=1.2e-07 Score=93.28 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=77.0
Q ss_pred EecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCC--------CCCchHHHHHHHHHhccC
Q 014461 182 MTKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRH--------LTSPDSRVIRLIERMGKQ 253 (424)
Q Consensus 182 ~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~--------~~~~~~~~~~~l~~~~~~ 253 (424)
+..++..+.+|||+|...+... ....++.++++|+|+|+++- .......+..|+..+...
T Consensus 212 ~~~~~v~l~iwDtaGQe~~r~~------------w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 212 FQVDKVNFHMFDVGGQRDERRK------------WIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp EEETTEEEEEEEECCSGGGGGG------------GGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eecCCccceecccchhhhhhhh------------hHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 4556788999999998754321 12356789999999999751 012233556667665443
Q ss_pred -CCCCCcEEEEEecCCCCCChh---h---------------------------HHHHHHHH-----hcC-----CC--CC
Q 014461 254 -APPKQKRVLCMNKVDLVTKKK---D---------------------------LLKVAEQF-----KHL-----PG--YE 290 (424)
Q Consensus 254 -~~~~~p~ilV~NK~Dl~~~~~---~---------------------------~~~~~~~~-----~~~-----~~--~~ 290 (424)
...+.|+++|+||+|+...+. . ..+....| ... .+ ..
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 234689999999999843211 0 01112222 111 01 12
Q ss_pred eEEEEecCCCcChHHHHHHHHHhc
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
.++++||+++.||+++|+++.+.+
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHH
Confidence 367899999999999999987765
No 226
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.54 E-value=3.3e-07 Score=86.27 Aligned_cols=94 Identities=16% Similarity=0.274 Sum_probs=69.2
Q ss_pred hHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCC
Q 014461 211 VRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYE 290 (424)
Q Consensus 211 ~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 290 (424)
...+..+..+..+|++++|+|+..+.+.....+.+++ .++|.++|+||+|+.+. .....+.+.+.. .++
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~-~~~~~~~~~~~~-~g~- 80 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADA-AVTQQWKEHFEN-QGI- 80 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCH-HHHHHHHHHHHT-TTC-
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCH-HHHHHHHHHHHh-cCC-
Confidence 3466777889999999999999877665544444443 14789999999999873 334444444433 344
Q ss_pred eEEEEecCCCcChHHHHHHHHHhcc
Q 014461 291 RIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 291 ~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
+++++||++|.|+++|++.+.+.+.
T Consensus 81 ~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 81 RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred cEEEEECCCcccHHHHHHHHHHHHH
Confidence 4899999999999999998877653
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.43 E-value=3.7e-07 Score=86.83 Aligned_cols=89 Identities=19% Similarity=0.311 Sum_probs=60.7
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh-h-HHHHHHHHhcCCCCCeEEEEe
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK-D-LLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~~~iS 296 (424)
.+.++|++++|+|++++... ...+..|+..+.. .+.|+++|+||+|+.+... . ..+..+.+.. .++ +++++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s-~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~-~g~-~~~~~S 149 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFN-NYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRD-AGY-DVLKVS 149 (302)
T ss_dssp EEESCCEEEEEECSTTTTCC-HHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-TTC-EEEECC
T ss_pred HHHhcCEEEEEEECCCCCCC-HHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-CCC-eEEEEE
Confidence 57889999999999864322 2334455544332 2488999999999986421 1 2333333333 355 599999
Q ss_pred cCCCcChHHHHHHHHHh
Q 014461 297 GLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 297 A~~g~gi~~L~~~i~~~ 313 (424)
|++|.|+++|++.+...
T Consensus 150 A~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 150 AKTGEGIDELVDYLEGF 166 (302)
T ss_dssp TTTCTTHHHHHHHTTTC
T ss_pred CCCCCCHHHHHhhccCc
Confidence 99999999999987654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.38 E-value=1.2e-06 Score=86.88 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=78.6
Q ss_pred cceEEEEEecCCCChhHHHHhHh------CCcceeecCCC----------------CceeeEEE-----------E--EE
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKT----------------NTTTHEVL-----------G--VM 182 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~----------------~tt~~~~~-----------~--~~ 182 (424)
++..|+++|++|+||||++..|. |.++..+.... +....... . ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46788999999999999999987 33332222110 10000000 0 00
Q ss_pred ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461 183 TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (424)
Q Consensus 183 ~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il 262 (424)
...++.++++||||...... . ......+......+ ..|.+++|+|+..+ .......+.+.+.. .+..+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~--d-~~lm~el~~i~~~~-~pd~vlLVlDa~~g--q~a~~~a~~f~~~~------~~~gV 243 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGE--E-TKLLEEMKEMYDVL-KPDDVILVIDASIG--QKAYDLASRFHQAS------PIGSV 243 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCC--T-THHHHHHHHHHHHH-CCSEEEEEEEGGGG--GGGHHHHHHHHHHC------SSEEE
T ss_pred HhcCCCEEEEECCCCccccC--C-HHHHHHHHHHHHhh-CCcceEEEEeCccc--hHHHHHHHHHhccc------CCcEE
Confidence 12367899999999653100 0 11112222222222 46899999999643 22223333333221 34788
Q ss_pred EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChH
Q 014461 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLK 304 (424)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~ 304 (424)
|+||+|....-......... .+. ++..++. |++++
T Consensus 244 IlTKlD~~a~~G~als~~~~----~g~-Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 244 IITKMDGTAKGGGALSAVVA----TGA-TIKFIGT--GEKID 278 (433)
T ss_dssp EEECGGGCSCHHHHHHHHHH----HTC-EEEEEEC--CSSSS
T ss_pred EEecccccccchHHHHHHHH----HCC-CEEEEEC--CCChH
Confidence 99999987543333333332 233 3666765 66654
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.33 E-value=9.2e-07 Score=86.50 Aligned_cols=95 Identities=17% Similarity=0.214 Sum_probs=63.0
Q ss_pred HHHHHhhc-ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCCh---hhHHHHHHHHhcCCC
Q 014461 213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKK---KDLLKVAEQFKHLPG 288 (424)
Q Consensus 213 ~~~~~~~~-~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~ 288 (424)
+...+..+ ..++++++|+|+++........+ .+.. .+.|+++|+||+|+.... ....+....+....+
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l----~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g 132 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNGSFIPGL----PRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG 132 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGGGCCSSH----HHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCCchhhHH----HHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence 34444444 66789999999976432221122 2221 147899999999998642 223344444444455
Q ss_pred C--CeEEEEecCCCcChHHHHHHHHHhcc
Q 014461 289 Y--ERIFMTSGLKGAGLKALTQYLMEQAV 315 (424)
Q Consensus 289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l~ 315 (424)
. ..++.+||++|.|+++|++.|.+...
T Consensus 133 ~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 133 LCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp CCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5 36899999999999999999987653
No 230
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.23 E-value=4.4e-06 Score=74.06 Aligned_cols=97 Identities=11% Similarity=0.048 Sum_probs=58.7
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCC--CCCCcEEEEEecC-CCCCChhhHHHHHHHHh--cCCCCCeEE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQA--PPKQKRVLCMNKV-DLVTKKKDLLKVAEQFK--HLPGYERIF 293 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~ilV~NK~-Dl~~~~~~~~~~~~~~~--~~~~~~~~~ 293 (424)
++..+|++|||+|+++........-+..+..+.... ..+.|++|+.||. |+... -...++.+.+. .....-.+.
T Consensus 122 Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A-ms~~EI~e~L~L~~l~R~W~Iq 200 (227)
T 3l82_B 122 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-MPCFYLAHELHLNLLNHPWLVQ 200 (227)
T ss_dssp HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB-CCHHHHHHHTTGGGGCSCEEEE
T ss_pred HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC-CCHHHHHHHcCCcCCCCCEEEE
Confidence 456789999999998653222111111122222111 2458999999996 67543 12223333321 111222589
Q ss_pred EEecCCCcChHHHHHHHHHhccC
Q 014461 294 MTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 294 ~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+|||++|+|+.+-++||.+.+..
T Consensus 201 ~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 201 DTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp EEETTTCTTHHHHHHHHTTTTTT
T ss_pred EeECCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999987743
No 231
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.21 E-value=9.3e-07 Score=88.11 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=44.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC---------------cceeecCCCCceeeEEEEEEecC-----------CccEE
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT---------------KVAAVSRKTNTTTHEVLGVMTKA-----------DTQIC 190 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~---------------~~~~~~~~~~tt~~~~~~~~~~~-----------~~~i~ 190 (424)
.+...|+|+|.+++|||||+|.|+|. +....+.. ++|+..+.+++.+. +.+++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCccccccCCCCcceEE
Confidence 46788999999999999999999864 22223322 25555556665442 35699
Q ss_pred EEeCCCcccC
Q 014461 191 IFDTPGLMLN 200 (424)
Q Consensus 191 l~DtpG~~~~ 200 (424)
++||||+..+
T Consensus 144 llDTeG~~~~ 153 (447)
T 3q5d_A 144 LMDTQGTFDS 153 (447)
T ss_dssp EEEEECCCSS
T ss_pred EEcCCccccc
Confidence 9999999765
No 232
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.20 E-value=2.7e-06 Score=83.07 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=61.3
Q ss_pred HHHHHhhc-ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCC
Q 014461 213 VESAWSAV-NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPG 288 (424)
Q Consensus 213 ~~~~~~~~-~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~ 288 (424)
+...+..+ +.+|++++|+|+++. ...+...+.++. .+.|+++|+||+|+..... ...+....+....+
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 33444333 456799999999652 223333344432 1478999999999976431 23333333333345
Q ss_pred C--CeEEEEecCCCcChHHHHHHHHHhc
Q 014461 289 Y--ERIFMTSGLKGAGLKALTQYLMEQA 314 (424)
Q Consensus 289 ~--~~~~~iSA~~g~gi~~L~~~i~~~l 314 (424)
+ ..++.+||++|.|+++|++.|.+..
T Consensus 131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 131 LKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp CCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 5 2699999999999999999997754
No 233
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.20 E-value=9.3e-06 Score=76.87 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=78.8
Q ss_pred ceEEEEEecCCCChhHHHHhHh------CCcceeecCCCCce--------------eeEEEE------------E---Ee
Q 014461 139 SVAVGIIGAPNAGKSSIINYMV------GTKVAAVSRKTNTT--------------THEVLG------------V---MT 183 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~------~~~~~~~~~~~~tt--------------~~~~~~------------~---~~ 183 (424)
+..++++|.+|+||||++..|. +.++..+...+... ...... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999987 33333222221100 000000 0 01
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc-EEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK-RVL 262 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~il 262 (424)
..++.++++||||..... . .......+.. +..+..+|.+++|+|+..+ . .....++.+.. ..| ..+
T Consensus 178 ~~~~D~ViIDTpg~~~~~--~-~~~l~~el~~-i~~~~~~d~vllVvda~~g--~---~~~~~~~~~~~----~~~i~gv 244 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG--E-EAALLEEMKN-IYEAIKPDEVTLVIDASIG--Q---KAYDLASKFNQ----ASKIGTI 244 (297)
T ss_dssp HTTCSEEEEECCCSCCTT--C-HHHHHHHHHH-HHHHHCCSEEEEEEEGGGG--G---GHHHHHHHHHH----TCTTEEE
T ss_pred hCCCCEEEEeCCCCcccc--c-HHHHHHHHHH-HHHHhcCCEEEEEeeCCch--H---HHHHHHHHHHh----hCCCCEE
Confidence 156789999999986410 0 0111111111 1223357999999998632 1 12223333322 134 678
Q ss_pred EEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461 263 CMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 263 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L 306 (424)
|+||+|........ ..+....+.+ +..++ +|++++++
T Consensus 245 Vlnk~D~~~~~g~~----~~~~~~~~~p-i~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 245 IITKMDGTAKGGGA----LSAVAATGAT-IKFIG--TGEKIDEL 281 (297)
T ss_dssp EEECGGGCTTHHHH----HHHHHTTTCC-EEEEE--CSSSTTCE
T ss_pred EEeCCCCCcchHHH----HHHHHHHCcC-EEEEe--CCCChhhc
Confidence 99999986532222 2233444554 66665 67777653
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=2.6e-05 Score=81.14 Aligned_cols=81 Identities=12% Similarity=0.268 Sum_probs=42.4
Q ss_pred CccEEEEeCCCcccC-CCCCChhhhhhHHHHHHhh-cc-cccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEE
Q 014461 186 DTQICIFDTPGLMLN-KSGYSHKDVKVRVESAWSA-VN-LFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVL 262 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~-~~~~~~~~~~~~~~~~~~~-~~-~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~il 262 (424)
...+.++|.||+... ..++... ....+...... +. ...+++++++++.... ......++..+... +.+.|+
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~-~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l~la~~v~~~---g~rtI~ 219 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPAD-IGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEALSMAQEVDPE---GDRTIG 219 (608)
T ss_dssp SCCEEEEECCC------CCSSCS-HHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHHHHHHHHCSS---CCSEEE
T ss_pred CCceeEeeCCCccccccCCCCHH-HHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHHHHHHHHhhc---CCceEE
Confidence 356999999997653 1222221 12223333332 22 3356667776643322 22345556665432 357999
Q ss_pred EEecCCCCCC
Q 014461 263 CMNKVDLVTK 272 (424)
Q Consensus 263 V~NK~Dl~~~ 272 (424)
|+||.|+...
T Consensus 220 VlTK~Dlv~~ 229 (608)
T 3szr_A 220 ILTKPDLVDK 229 (608)
T ss_dssp EEECGGGSSS
T ss_pred EecchhhcCc
Confidence 9999999864
No 235
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.12 E-value=1.4e-06 Score=81.01 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=62.2
Q ss_pred HHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChhhHHHHHHHHhcCCCCCeE
Q 014461 213 VESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERI 292 (424)
Q Consensus 213 ~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+..+..+..+|++++|+|+..+.......+. ++ ++|.++|+||+|+.+. .......+.+.. .+.. +
T Consensus 12 ~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~-~~~~~~~~~~~~-~g~~-v 78 (262)
T 3cnl_A 12 KRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADE-KTTKKWVEFFKK-QGKR-V 78 (262)
T ss_dssp THHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCH-HHHHHHHHHHHH-TTCC-E
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCH-HHHHHHHHHHHH-cCCe-E
Confidence 45566778899999999999876554332221 21 4789999999999873 334444455543 2454 6
Q ss_pred EEEecCCCcChHHHHHHHHHh
Q 014461 293 FMTSGLKGAGLKALTQYLMEQ 313 (424)
Q Consensus 293 ~~iSA~~g~gi~~L~~~i~~~ 313 (424)
++||++|.|+++|++.+.+.
T Consensus 79 -~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 79 -ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp -EECCTTSCHHHHHHHHCCCT
T ss_pred -EEECCCCcCHHHHHHHHHHh
Confidence 99999999999999888664
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.88 E-value=6.2e-05 Score=72.16 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=77.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC------cceeecCCCCc-----------eeeEEEEEE-----------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT------KVAAVSRKTNT-----------TTHEVLGVM----------------- 182 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~------~~~~~~~~~~t-----------t~~~~~~~~----------------- 182 (424)
.++..++++|++||||||+++.|.+. ++...+..... .+.....+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45778999999999999999998852 22111111000 000000000
Q ss_pred -ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE
Q 014461 183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV 261 (424)
Q Consensus 183 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i 261 (424)
...+..+.++||+|.......+ . ..+... ...-..|-.++++|+..+ ..+.+.++.+.... ....
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l----~-~eL~~i-~ral~~de~llvLDa~t~-----~~~~~~~~~~~~~~---~it~ 272 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNL----M-DEMKKI-ARVTKPNLVIFVGDALAG-----NAIVEQARQFNEAV---KIDG 272 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCH----H-HHHHHH-HHHHCCSEEEEEEEGGGT-----THHHHHHHHHHHHS---CCCE
T ss_pred HHhccchhhHHhhccchhHHHHH----H-HHHHHH-HHHhcCCCCEEEEecHHH-----HHHHHHHHHHHHhc---CCCE
Confidence 0124567899999985432211 1 111111 112236889999998643 12333333332111 1247
Q ss_pred EEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461 262 LCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 262 lV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L 306 (424)
+++||.|....-.......... +.+ +..++ +|++++++
T Consensus 273 iilTKlD~~a~~G~~l~~~~~~----~~p-i~~i~--~Ge~v~dl 310 (328)
T 3e70_C 273 IILTKLDADARGGAALSISYVI----DAP-ILFVG--VGQGYDDL 310 (328)
T ss_dssp EEEECGGGCSCCHHHHHHHHHH----TCC-EEEEE--CSSSTTCE
T ss_pred EEEeCcCCccchhHHHHHHHHH----CCC-EEEEe--CCCCcccc
Confidence 8899999754333333333333 333 66676 77777553
No 237
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.83 E-value=2.6e-05 Score=72.55 Aligned_cols=95 Identities=8% Similarity=0.022 Sum_probs=58.5
Q ss_pred hcccccEEEEEEeCCCCCCCchH-HHH---HHHHHhccCCCCCCcEEEEEec-CCCCCChhhHHHHHHHHh--cCCCCCe
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDS-RVI---RLIERMGKQAPPKQKRVLCMNK-VDLVTKKKDLLKVAEQFK--HLPGYER 291 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~-~~~---~~l~~~~~~~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~~--~~~~~~~ 291 (424)
++..+|++|||+|+++....... ++. .++.+-. ...+.|++|..|| .|+... -...++.+.+. .....-.
T Consensus 207 Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~--~l~~apLLVfANKkQDlp~A-ms~~EI~e~L~L~~l~r~W~ 283 (312)
T 3l2o_B 207 VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAF--GSSGRPLLVLSCISQGDVKR-MPCFYLAHELHLNLLNHPWL 283 (312)
T ss_dssp HHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHH--HCTTCCEEEEEEESSTTSCB-CCHHHHHHHTTGGGGCSCEE
T ss_pred HhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchh--hcCCCeEEEEeCCcccccCC-CCHHHHHHHcCCccCCCcEE
Confidence 45678999999999865432211 111 2222110 0125789999997 588653 12223333321 1112225
Q ss_pred EEEEecCCCcChHHHHHHHHHhccC
Q 014461 292 IFMTSGLKGAGLKALTQYLMEQAVQ 316 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~~l~~ 316 (424)
+.+|||.+|+|+.+-++||.+.+..
T Consensus 284 Iq~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 284 VQDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred EEecccCCCcCHHHHHHHHHHHHHh
Confidence 8999999999999999999998753
No 238
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.82 E-value=9.7e-05 Score=70.04 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..++++|++|||||||++.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 466899999999999999999874
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.76 E-value=0.00013 Score=73.22 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=76.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC------CcceeecCCCCce-----------eeEEEEEE-----------------
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG------TKVAAVSRKTNTT-----------THEVLGVM----------------- 182 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~------~~~~~~~~~~~tt-----------~~~~~~~~----------------- 182 (424)
.++..++|+|.+|+|||||++.|.+ +++.......... +..+..+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 3566899999999999999999875 2222211111100 00000000
Q ss_pred -ecCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCc
Q 014461 183 -TKADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQK 259 (424)
Q Consensus 183 -~~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p 259 (424)
...+..++++||+|.......+. ..+.. +......+ ...+-+++|+|++.+ . .....++.+.... ..
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm-~EL~k-iv~iar~l~~~~P~evLLvLDattG---q--~al~~ak~f~~~~---~i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLM-EELKK-IVRVMKKLDVEAPHEVMLTIDASTG---Q--NAVSQAKLFHEAV---GL 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHH-HHHHH-HHHHHHTTCTTCSSEEEEEEEGGGT---H--HHHHHHHHHHHHT---CC
T ss_pred HHhcCCCEEEEeCCCccchhhhHH-HHHHH-HHHHHHHhccCCCCeeEEEecCccc---H--HHHHHHHHHHhhc---CC
Confidence 01356789999999753321000 01111 11111111 235678999998642 1 1222333332111 12
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHhcCCCCCeEEEEecCCCcChHHH
Q 014461 260 RVLCMNKVDLVTKKKDLLKVAEQFKHLPGYERIFMTSGLKGAGLKAL 306 (424)
Q Consensus 260 ~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~L 306 (424)
..+|+||+|-...-.........+ +.+ +.++ -+|+++++|
T Consensus 441 tgvIlTKLD~takgG~~lsi~~~~----~~P-I~fi--g~Ge~vdDL 480 (503)
T 2yhs_A 441 TGITLTKLDGTAKGGVIFSVADQF----GIP-IRYI--GVGERIEDL 480 (503)
T ss_dssp SEEEEECGGGCSCCTHHHHHHHHH----CCC-EEEE--ECSSSGGGE
T ss_pred CEEEEEcCCCcccccHHHHHHHHH----CCC-EEEE--ecCCChhhc
Confidence 467899999754434444444433 333 5444 467777653
No 240
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.60 E-value=3.2e-05 Score=73.33 Aligned_cols=86 Identities=17% Similarity=0.388 Sum_probs=58.8
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh---hHHHHHHHHhcCCCCCeEEEE
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK---DLLKVAEQFKHLPGYERIFMT 295 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~i 295 (424)
.+..+|.+++|+|+..+..... .+.+++..... .++|.++|+||+|+.+... ....+.+.+... ++ +++.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~-g~-~v~~~ 156 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNI-GY-DVYLT 156 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHH-TC-CEEEC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhC-CC-eEEEE
Confidence 4678899999999975544443 45555543221 1478899999999987632 134444555332 45 48999
Q ss_pred ecCCCcChHHHHHHH
Q 014461 296 SGLKGAGLKALTQYL 310 (424)
Q Consensus 296 SA~~g~gi~~L~~~i 310 (424)
||.+|.|+++|++.+
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999999877644
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.44 E-value=0.00028 Score=66.88 Aligned_cols=24 Identities=13% Similarity=0.315 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+..++++|++|+||||++..|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 456789999999999999998874
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.39 E-value=0.0017 Score=61.83 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..++++|.+|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999998864
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.33 E-value=0.00056 Score=64.50 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=62.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC-------CcceeecCCCCc-e---------------eeEEE-------EEEecCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG-------TKVAAVSRKTNT-T---------------THEVL-------GVMTKADT 187 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~-------~~~~~~~~~~~t-t---------------~~~~~-------~~~~~~~~ 187 (424)
++..++++|++|+||||++..|.+ .++..+...+.. + ..... ......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 466899999999999999998863 122222111110 0 00000 00012456
Q ss_pred cEEEEeCCCcccCCCCCChhhhhhHHHHHHhhc--ccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 188 QICIFDTPGLMLNKSGYSHKDVKVRVESAWSAV--NLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 188 ~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~--~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
+++++||||..... . ..+......+ ...|.+++|+|++.. ...+.++...+... ...-+|+|
T Consensus 184 dlvIiDT~G~~~~~-----~---~~~~el~~~l~~~~~~~~~lVl~at~~----~~~~~~~~~~~~~l----~~~giVlt 247 (296)
T 2px0_A 184 DHVFVDTAGRNFKD-----P---QYIDELKETIPFESSIQSFLVLSATAK----YEDMKHIVKRFSSV----PVNQYIFT 247 (296)
T ss_dssp SEEEEECCCCCTTS-----H---HHHHHHHHHSCCCTTEEEEEEEETTBC----HHHHHHHTTTTSSS----CCCEEEEE
T ss_pred CEEEEeCCCCChhh-----H---HHHHHHHHHHhhcCCCeEEEEEECCCC----HHHHHHHHHHHhcC----CCCEEEEe
Confidence 89999999976321 1 1111111122 235778999998632 22333333333311 12346779
Q ss_pred cCCCCCC
Q 014461 266 KVDLVTK 272 (424)
Q Consensus 266 K~Dl~~~ 272 (424)
|+|....
T Consensus 248 k~D~~~~ 254 (296)
T 2px0_A 248 KIDETTS 254 (296)
T ss_dssp CTTTCSC
T ss_pred CCCcccc
Confidence 9998654
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.25 E-value=0.0018 Score=62.63 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++-.++++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 466889999999999999999875
No 245
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.25 E-value=0.00027 Score=62.38 Aligned_cols=114 Identities=13% Similarity=0.161 Sum_probs=64.8
Q ss_pred EEEEE-ecCCCChhHHHHhHh------CCcceeecCCCCceeeE-------EEEEEe-------------cCCccEEEEe
Q 014461 141 AVGII-GAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHE-------VLGVMT-------------KADTQICIFD 193 (424)
Q Consensus 141 ~v~vv-G~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~-------~~~~~~-------------~~~~~i~l~D 193 (424)
.|+|. +..|+||||+.-.|. |.++..+.-.++.+... ....+. ...+.++++|
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~viiD 82 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIVD 82 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEEE
Confidence 35566 578899999988765 33433333222211000 000111 1357899999
Q ss_pred CCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCC
Q 014461 194 TPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLV 270 (424)
Q Consensus 194 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~ 270 (424)
||+.... .....+..+|.+++++..+... .....+.+.+++.... .++.++.+|+|++|..
T Consensus 83 ~~~~~~~--------------~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 83 GAGSLSV--------------ITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAY-SRKVEARFLITRKIEM 143 (206)
T ss_dssp CCSSSSH--------------HHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCG-GGCCEEEEEECSBCTT
T ss_pred CCCCCCH--------------HHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHh-CCCCcEEEEEeccCCC
Confidence 9986521 1122345579999999986433 3333455666655422 2335678999999954
No 246
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.12 E-value=0.0016 Score=62.90 Aligned_cols=85 Identities=18% Similarity=0.291 Sum_probs=54.5
Q ss_pred hcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCCChh--hHHHHHHHHhcCCCCCeEEEEe
Q 014461 219 AVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVTKKK--DLLKVAEQFKHLPGYERIFMTS 296 (424)
Q Consensus 219 ~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~iS 296 (424)
.+..+|.+++|... .+ ......+..+|...... ++|.++|+||+|+.+... ....+...|.. .++. ++.+|
T Consensus 127 i~anvD~v~iv~a~-~P-~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-~G~~-v~~~S 199 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LP-ELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-IGYR-VLMVS 199 (358)
T ss_dssp EEECCCEEEEEEES-TT-TCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-TTCC-EEECB
T ss_pred HHhcCCEEEEEEeC-CC-CCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHh-CCCc-EEEEe
Confidence 35778999977544 33 22233444444321111 367899999999987422 13344555543 4665 89999
Q ss_pred cCCCcChHHHHHHH
Q 014461 297 GLKGAGLKALTQYL 310 (424)
Q Consensus 297 A~~g~gi~~L~~~i 310 (424)
|.+|.|+++|...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999988765
No 247
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.05 E-value=0.0027 Score=59.95 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++-.++++|++||||||+++.|.+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3466889999999999999999875
No 248
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.04 E-value=0.003 Score=62.46 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..++++|.+|+||||++..|.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998873
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.94 E-value=8.9e-05 Score=65.58 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=36.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCcc-eeecCCCCceeeEEEEEEecCCccEEEEeCCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHEVLGVMTKADTQICIFDTPG 196 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~i~l~DtpG 196 (424)
.++..++++|++|||||||++.|.+... ......+.||+....+. .++..+.++|...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~ 75 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEE 75 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHH
Confidence 4566789999999999999999986432 12344455665543221 2344455555544
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.87 E-value=0.0083 Score=56.38 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..++++|.+|+||||++..|.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999998874
No 251
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.61 E-value=0.0043 Score=61.51 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~ 160 (424)
.+...|+|+|..++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 356778999999999999999664
No 252
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.46 E-value=0.0047 Score=58.22 Aligned_cols=69 Identities=19% Similarity=0.161 Sum_probs=38.6
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCM 264 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~ 264 (424)
++.++++|||+..... . ....+..+|.+++|++.+...-.....+.+.++.... ..+.+++ +|+
T Consensus 156 ~yD~ViiD~p~~~~~~------~-------~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~--~~~~~~~gvV~ 220 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG------G-------FAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSK--NYKVRLAGCVA 220 (307)
T ss_dssp SCSEEEEEECCSSCCG------G-------GGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTT--TCCCEEEEEEE
T ss_pred cCCEEEEeCCCccchH------H-------HHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhh--cCCCceEEEEE
Confidence 4678999998754321 0 0123566899999998742100111233444444321 2235554 899
Q ss_pred ecCCC
Q 014461 265 NKVDL 269 (424)
Q Consensus 265 NK~Dl 269 (424)
|+++.
T Consensus 221 N~~~~ 225 (307)
T 3end_A 221 NRSRA 225 (307)
T ss_dssp ESCSC
T ss_pred ecCCc
Confidence 99984
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.38 E-value=0.0014 Score=56.94 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEEecCCCChhHHHHhHhCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~ 162 (424)
+++++|++|+|||||++.+.|.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 254
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.31 E-value=0.0013 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+..++++|++|+|||||++.|.+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456899999999999999999863
No 255
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.30 E-value=0.0042 Score=55.17 Aligned_cols=110 Identities=11% Similarity=0.102 Sum_probs=60.2
Q ss_pred EEEE-ecCCCChhHHHHhHh------CCcceeecCCCCceeeEEE-------EEEe-------cCCccEEEEeCCCc-cc
Q 014461 142 VGII-GAPNAGKSSIINYMV------GTKVAAVSRKTNTTTHEVL-------GVMT-------KADTQICIFDTPGL-ML 199 (424)
Q Consensus 142 v~vv-G~~~~GKStLin~l~------~~~~~~~~~~~~tt~~~~~-------~~~~-------~~~~~i~l~DtpG~-~~ 199 (424)
|+|. +..|+||||+.-.|. | ++..+.-.++.+..... ..+. ...+.++++|||+. ..
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~ 81 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPED 81 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSS
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCc
Confidence 5554 678999999988775 3 44333322221100000 0010 23567999999986 42
Q ss_pred CCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEecCCCCC
Q 014461 200 NKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNKVDLVT 271 (424)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK~Dl~~ 271 (424)
. . . ...+..+|.+++++..+...-.....+.+.++... +.++.+|+|++|...
T Consensus 82 ~-------~----~---~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~-----~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 82 E-------D----L---EALADGCDLLVIPSTPDALALDALMLTIETLQKLG-----NNRFRILLTIIPPYP 134 (209)
T ss_dssp S-------H----H---HHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTC-----SSSEEEEECSBCCTT
T ss_pred H-------H----H---HHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhcc-----CCCEEEEEEecCCcc
Confidence 2 1 1 12345679999999874211111123334444432 245889999999754
No 256
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0017 Score=56.16 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.7
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|||||||++.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457899999999999999999863
No 257
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.18 E-value=0.0044 Score=57.06 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=39.4
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEe
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMN 265 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~N 265 (424)
.+.++++|||+.... .+...+..+|.+++++..+.........+.+.++..+ .+.++.+|+|
T Consensus 144 ~yD~viiD~pp~~~~--------------~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~----~~~~~~vv~N 205 (267)
T 3k9g_A 144 KYDYIVIDTNPSLDV--------------TLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLN----LFLPIFLIIT 205 (267)
T ss_dssp TCSEEEEEECSSCSH--------------HHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTT----CCCCEEEEEE
T ss_pred CCCEEEEECcCCccH--------------HHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHh----ccCCEEEEEe
Confidence 467899999985421 1123345589999999985311111123344444442 2356789999
Q ss_pred cCCCC
Q 014461 266 KVDLV 270 (424)
Q Consensus 266 K~Dl~ 270 (424)
+++..
T Consensus 206 ~~~~~ 210 (267)
T 3k9g_A 206 RFKKN 210 (267)
T ss_dssp EECTT
T ss_pred cccCc
Confidence 99543
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.15 E-value=0.0031 Score=54.69 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=22.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
++..++++|++|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999874
No 259
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.11 E-value=0.0025 Score=56.50 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++..|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999999999999999864
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.11 E-value=0.0025 Score=56.03 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|||||||++.|.+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3557899999999999999999864
No 261
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.08 E-value=0.0025 Score=56.44 Aligned_cols=26 Identities=19% Similarity=0.311 Sum_probs=22.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++-.++++|++|||||||++.|.|.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567899999999999999999874
No 262
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.01 E-value=0.0028 Score=56.89 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+++..++++|++|||||||++.|.+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 345677899999999999999999874
No 263
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.99 E-value=0.0036 Score=56.78 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456679999999999999999998753
No 264
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.97 E-value=0.0025 Score=57.12 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..++++|++|+|||||++.|.+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34667899999999999999999873
No 265
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.95 E-value=0.0038 Score=56.18 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998853
No 266
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.91 E-value=0.0029 Score=55.03 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEecCCCChhHHHHhHhCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++++|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3789999999999999999864
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.87 E-value=0.0042 Score=55.09 Aligned_cols=26 Identities=12% Similarity=0.302 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
++..++++|++|||||||++.|.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678999999999999999998653
No 268
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.84 E-value=0.0046 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++-.++++|++|+|||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 456789999999999999998664
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.84 E-value=0.0041 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
++..|+++|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.80 E-value=0.0049 Score=56.00 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456679999999999999999998853
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.78 E-value=0.0053 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999999853
No 272
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.76 E-value=0.0051 Score=56.77 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678999999999999999998853
No 273
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.74 E-value=0.005 Score=52.22 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|+.|+|||||++.|.+.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456679999999999999999998743
No 274
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.72 E-value=0.0051 Score=56.61 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999998853
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.72 E-value=0.0036 Score=54.67 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=24.8
Q ss_pred EEEEecCCCChhHHHHhHhCCcc-eeecCCCCceeeE
Q 014461 142 VGIIGAPNAGKSSIINYMVGTKV-AAVSRKTNTTTHE 177 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~~-~~~~~~~~tt~~~ 177 (424)
|+|+|++|||||||++.|+.... ......+.||+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 78999999999999999975321 1123345566543
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.72 E-value=0.005 Score=57.27 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 456678999999999999999998843
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.71 E-value=0.0051 Score=56.90 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456679999999999999999999853
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.71 E-value=0.0051 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChhHHHHhHhCCc
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
-.++++|++|+|||||++.+.|-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999999853
No 279
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=95.71 E-value=0.0073 Score=56.53 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=39.8
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEE-EEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRV-LCM 264 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~i-lV~ 264 (424)
.+.++++|||+.... ... ..+..+|.+++++..+.........+.+.+........++.+++ +|+
T Consensus 154 ~yD~IiiD~pp~~~~-----------~~~---~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~ 219 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV-----------YTN---NAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVP 219 (298)
T ss_dssp GCSEEEEEECSSCSH-----------HHH---HHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCCEEEEECCCCccH-----------HHH---HHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 356899999986421 011 12335899999998853211112234444544321111235544 899
Q ss_pred ecCCCCC
Q 014461 265 NKVDLVT 271 (424)
Q Consensus 265 NK~Dl~~ 271 (424)
|++|...
T Consensus 220 n~~~~~~ 226 (298)
T 2oze_A 220 YLVDTDS 226 (298)
T ss_dssp EESCTTC
T ss_pred EEECCCc
Confidence 9999654
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.71 E-value=0.0053 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.526 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.+.|..
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356679999999999999999999853
No 281
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.70 E-value=0.0047 Score=54.23 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=22.5
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
++..++++|++||||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999998643
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.70 E-value=0.0053 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356679999999999999999998853
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.66 E-value=0.0059 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 45667999999999999999999885
No 284
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.65 E-value=0.0047 Score=55.19 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.+-.++++|++|+|||||++.|.|-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998853
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.63 E-value=0.0061 Score=56.19 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=23.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 45668999999999999999999874
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.63 E-value=0.0058 Score=55.61 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 355679999999999999999998853
No 287
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.63 E-value=0.0062 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456679999999999999999999853
No 288
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.62 E-value=0.0048 Score=55.83 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=38.7
Q ss_pred cCCccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEE
Q 014461 184 KADTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLC 263 (424)
Q Consensus 184 ~~~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV 263 (424)
...+.++++|||+..... . ...+..+|.+++|++.+...-.....+.+++...+. ..+.+|
T Consensus 129 ~~~yD~viiD~pp~~~~~-----------~---~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~-----~~~~~v 189 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEHL-----------T---RGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGI-----KKVRYV 189 (254)
T ss_dssp HTCCSEEEEEECTTCTTC-----------C---HHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTC-----SCEEEE
T ss_pred cCCCCEEEEeCCCcccHH-----------H---HHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCC-----ccEEEE
Confidence 346789999998754321 0 123466899999998742111111233344444431 347789
Q ss_pred EecCC
Q 014461 264 MNKVD 268 (424)
Q Consensus 264 ~NK~D 268 (424)
+|+++
T Consensus 190 ~N~~~ 194 (254)
T 3kjh_A 190 INKVR 194 (254)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 99998
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.61 E-value=0.006 Score=55.86 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999998853
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.56 E-value=0.0067 Score=56.28 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456679999999999999999998853
No 291
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.54 E-value=0.0069 Score=56.08 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667999999999999999999985
No 292
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.54 E-value=0.0065 Score=55.63 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999999985
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.51 E-value=0.0067 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356679999999999999999998853
No 294
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.50 E-value=0.0053 Score=54.61 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+-.++++|++|+|||||++.+.|.
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 556899999999999999999986
No 295
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.49 E-value=0.0074 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 356679999999999999999998853
No 296
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.48 E-value=0.007 Score=55.53 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678999999999999999999853
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.47 E-value=0.0066 Score=56.01 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..++++|++|+|||||++.+.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 45678999999999999999999873
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.47 E-value=0.006 Score=57.53 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.2
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...++-.++|+|++|+|||||++.|.|-
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4456778999999999999999999863
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.38 E-value=0.0069 Score=53.18 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+..|+++|++|+|||||++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.36 E-value=0.0085 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
++..|+++|++|+|||||++.|.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999998
No 301
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.33 E-value=0.0076 Score=57.12 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++..|+|+|++|+|||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456788999999999999999999864
No 302
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.31 E-value=0.0095 Score=55.82 Aligned_cols=27 Identities=22% Similarity=0.526 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456679999999999999999999853
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.24 E-value=0.006 Score=54.90 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=17.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHh-CC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV-GT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~-~~ 162 (424)
..+..++++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345678999999999999999998 64
No 304
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.24 E-value=0.011 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..|+++|++|+||||+.+.|.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998753
No 305
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.23 E-value=0.0066 Score=57.35 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 45678999999999999999999874
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.23 E-value=0.0092 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+..++++|++|+||||+++.|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 307
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.21 E-value=0.0081 Score=52.92 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.7
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+++|++|||||||++.|..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999999999975
No 308
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.20 E-value=0.0069 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|+++|++|+||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 309
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.17 E-value=0.0099 Score=54.85 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
+-.++++|++|+|||||++.|.|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999999854
No 310
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.14 E-value=0.0092 Score=51.71 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..++++|++|+|||||++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999974
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.14 E-value=0.013 Score=51.66 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=24.5
Q ss_pred hhcccceEEEEEecCCCChhHHHHhHhCC
Q 014461 134 EEDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 134 ~~~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+...++..|+++|.+|+||||+++.|.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34455678999999999999999999874
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.12 E-value=0.01 Score=54.02 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=22.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+++|++|+|||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.08 E-value=0.0074 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHhHhCC
Q 014461 141 AVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999864
No 314
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.08 E-value=0.27 Score=45.64 Aligned_cols=67 Identities=12% Similarity=0.082 Sum_probs=38.7
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcEEEEEec
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKRVLCMNK 266 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~ilV~NK 266 (424)
+.++++|||+..... .+......+|.+++|+..............+.++..+. ..+-+|+|+
T Consensus 202 yD~VIIDtpp~~~~~-------------da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~-----~~~GvVlN~ 263 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-------------DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGI-----PVKGVILNS 263 (286)
T ss_dssp CSEEEEECCCTTTCT-------------HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTC-----CCCEEEEEE
T ss_pred CCEEEEcCCCCcchH-------------HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCC-----CEEEEEEcC
Confidence 458999999865320 11223456899999999853211111234444544431 234578999
Q ss_pred CCCCC
Q 014461 267 VDLVT 271 (424)
Q Consensus 267 ~Dl~~ 271 (424)
+|...
T Consensus 264 v~~~~ 268 (286)
T 3la6_A 264 IFRRA 268 (286)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 98654
No 315
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.04 E-value=0.012 Score=56.85 Aligned_cols=27 Identities=33% Similarity=0.462 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.+.|-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456679999999999999999999853
No 316
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.01 E-value=0.03 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+.-+++.|+||+|||+|+.++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999874
No 317
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.98 E-value=0.013 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 345678999999999999999999843
No 318
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.98 E-value=0.026 Score=52.81 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=23.1
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++..|+|+|++|+|||||++.|.+
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999998875
No 319
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.96 E-value=0.012 Score=52.45 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=23.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++-.++++|++|+|||||++.+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999986
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.94 E-value=0.013 Score=50.51 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 321
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.91 E-value=0.013 Score=49.50 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChhHHHHhH
Q 014461 140 VAVGIIGAPNAGKSSIINYM 159 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l 159 (424)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 322
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.83 E-value=0.0064 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=20.5
Q ss_pred eEEEEEecCCCChhHHHHhHhCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++|+|++|+|||||++.|.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 323
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.2 Score=47.30 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....|++.|+||+|||+|+.++..
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHH
Confidence 346799999999999999999875
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.81 E-value=0.016 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|+++|.+|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999863
No 325
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.79 E-value=0.016 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.8
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|++.|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999875
No 326
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.79 E-value=0.014 Score=55.08 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=22.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+|+|++|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999976
No 327
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.78 E-value=0.015 Score=56.06 Aligned_cols=27 Identities=19% Similarity=0.427 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 345678999999999999999999843
No 328
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.77 E-value=0.011 Score=50.77 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|+|||||++++.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999998764
No 329
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.76 E-value=0.015 Score=56.07 Aligned_cols=27 Identities=26% Similarity=0.666 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 355678999999999999999999853
No 330
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.75 E-value=0.015 Score=49.12 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 331
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.75 E-value=0.016 Score=56.03 Aligned_cols=27 Identities=19% Similarity=0.458 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 355678999999999999999999853
No 332
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.73 E-value=0.015 Score=52.44 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=22.5
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..++-.++++|++|+|||||++.+++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44567899999999999999999873
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.73 E-value=0.013 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|+++|++|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.72 E-value=0.019 Score=49.65 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 335
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.72 E-value=0.016 Score=56.27 Aligned_cols=27 Identities=22% Similarity=0.486 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 345678999999999999999999843
No 336
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.70 E-value=0.014 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|+++|.+|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999976
No 337
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.69 E-value=0.014 Score=56.51 Aligned_cols=25 Identities=12% Similarity=0.355 Sum_probs=22.3
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|+|||||++.|.+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4567999999999999999999874
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.67 E-value=0.018 Score=49.75 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999998853
No 339
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.67 E-value=0.015 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
....++|+|++|+|||||++++++.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3458999999999999999999863
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.66 E-value=0.019 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 341
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.66 E-value=0.017 Score=50.72 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=22.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+++|.+|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 342
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.65 E-value=0.018 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|.+.|.+|+||||+.+.|..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999864
No 343
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.65 E-value=0.018 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|+++|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 344
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.64 E-value=0.016 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++..|+|.|.+|+||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678999999999999999999764
No 345
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.64 E-value=0.016 Score=49.96 Aligned_cols=24 Identities=8% Similarity=0.252 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...++++|++|+|||||+++|++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 356899999999999999999863
No 346
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.62 E-value=0.018 Score=55.91 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.+.|-
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 35667899999999999999999984
No 347
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.62 E-value=0.25 Score=44.66 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|+||+|||+++.++..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999865
No 348
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.60 E-value=0.018 Score=50.39 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|+++|++|+||||+...|..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.58 E-value=0.017 Score=56.03 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=23.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 345678999999999999999999853
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.53 E-value=0.02 Score=52.31 Aligned_cols=24 Identities=17% Similarity=0.327 Sum_probs=21.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~ 160 (424)
.++..|+|+|++|+||||+++.|.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.49 E-value=0.018 Score=54.75 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+++.|+++|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999865
No 352
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.46 E-value=0.017 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|+|||||++.|.+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999874
No 353
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.45 E-value=0.018 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=22.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+..++++|++|+|||||++.|.+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34667999999999999999999863
No 354
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.43 E-value=0.013 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+++|+|++|+|||||++.|.|.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999874
No 355
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.42 E-value=0.022 Score=49.20 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=21.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+++..|+++|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.40 E-value=0.022 Score=55.59 Aligned_cols=26 Identities=23% Similarity=0.514 Sum_probs=23.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..+-.++++|++|+|||||++.|.|-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 45667999999999999999999984
No 357
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.40 E-value=0.018 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|+++|.+|+||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.37 E-value=0.034 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++.+|++.|+|||||||+...|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999999863
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.36 E-value=0.023 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.6
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|++.|.+|+||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999864
No 360
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.36 E-value=0.015 Score=55.93 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 345678999999999999999999853
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.36 E-value=0.023 Score=49.63 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999875
No 362
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.35 E-value=0.036 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.3
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+..|+++|.||+||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999999864
No 363
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.34 E-value=0.017 Score=48.35 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999863
No 364
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.59 Score=46.08 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+.-|++.|+||+|||+|+.++.+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 34456799999999999999999975
No 365
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.29 E-value=0.047 Score=50.91 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.1
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+..|++.|+|||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 366
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.26 E-value=0.023 Score=49.52 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999864
No 367
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.26 E-value=0.026 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|++.|.+|+||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.22 E-value=0.027 Score=48.72 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.17 E-value=0.028 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|++.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 370
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.16 E-value=0.028 Score=48.41 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=22.4
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.+++..|+++|.+|+||||+.+.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34567899999999999999999864
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.15 E-value=0.024 Score=50.09 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 372
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.38 Score=45.41 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=22.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..+.+.|+||+|||++++.++.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999875
No 373
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.11 E-value=0.014 Score=56.20 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.+.|-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 345678999999999999999999853
No 374
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.07 E-value=0.92 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+.-|++.|+||+|||+|+.++.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHH
Confidence 3445689999999999999999975
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.06 E-value=0.03 Score=47.94 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|+++|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467799999999999999999875
No 376
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.04 E-value=0.024 Score=48.55 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHh
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~ 160 (424)
++...|++.|.+|+||||+.+.|.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 345679999999999999999986
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.04 E-value=0.028 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=20.3
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
+...|++.|.+||||||+.+.|.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 378
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.04 E-value=0.028 Score=56.97 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=21.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+..++|+|++|+|||||+++|++.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456999999999999999999863
No 379
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.02 E-value=0.028 Score=49.89 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|+++|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999864
No 380
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.01 E-value=0.027 Score=49.83 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999853
No 381
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.00 E-value=0.033 Score=48.43 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.+...|+++|.+|+||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999998753
No 382
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.99 E-value=0.65 Score=42.32 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.....+.+.|+||+|||+|+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4567899999999999999999875
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.99 E-value=0.03 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.0
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+..|++.|.+|+||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999863
No 384
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.99 E-value=0.025 Score=55.78 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhCC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
++..++|+|++|+|||||++++++.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4567999999999999999999863
No 385
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.04 Score=55.03 Aligned_cols=29 Identities=21% Similarity=0.333 Sum_probs=24.5
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
....+-.++++|++|+|||||++.|.|-.
T Consensus 134 ~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 134 SNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 34467789999999999999999998743
No 386
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.88 E-value=0.031 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|+++|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 387
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.81 E-value=0.034 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++++|.+|+|||||+++|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 388
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.81 E-value=0.029 Score=49.90 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.8
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999863
No 389
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.78 E-value=0.024 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=16.1
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
++..|++.|.+||||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999999986
No 390
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.76 E-value=0.033 Score=56.78 Aligned_cols=27 Identities=19% Similarity=0.600 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 345678999999999999999999853
No 391
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.75 E-value=0.029 Score=53.92 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=23.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++-+++++|++|+|||||++.|.+.
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 356788999999999999999999874
No 392
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.72 E-value=0.029 Score=53.17 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.0
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...++++|..|+|||||+|.|.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 356799999999999999999864
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.69 E-value=0.033 Score=47.68 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
..+|+|++|+|||||+.+|..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999864
No 394
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.69 E-value=0.025 Score=52.39 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=19.2
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
++++|+||+|||||++++.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999976
No 395
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.67 E-value=1.8 Score=41.17 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=43.5
Q ss_pred ccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEEecCCCCCChh--------hHHHHHHHHhcCCCCC--e
Q 014461 223 FEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCMNKVDLVTKKK--------DLLKVAEQFKHLPGYE--R 291 (424)
Q Consensus 223 aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~--~ 291 (424)
.+.+++|...............+.++..+ .|+ -+|+|++.-..... ......+.+.+.++.. .
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~------i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~ 310 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYG------IPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIA 310 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTT------CCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEE
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCC------CCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 36788887663210011113334444433 455 57899997653201 1233344555545443 2
Q ss_pred EEEEecCCCcChHHHHHHHHH
Q 014461 292 IFMTSGLKGAGLKALTQYLME 312 (424)
Q Consensus 292 ~~~iSA~~g~gi~~L~~~i~~ 312 (424)
.+|.....-.|++.|......
T Consensus 311 ~iPl~~~e~~g~~~L~~~~~~ 331 (349)
T 3ug7_A 311 YVPLLRTEAKGIETLKQIAKI 331 (349)
T ss_dssp EEECCSSCSCSHHHHHHHHHH
T ss_pred EecCCCCCCCCHHHHHHHHHH
Confidence 456677777888877654433
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.67 E-value=0.039 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|++.|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999853
No 397
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.63 E-value=0.036 Score=57.16 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456689999999999999999998753
No 398
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.60 E-value=0.021 Score=50.31 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|+|.|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999874
No 399
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.60 E-value=0.36 Score=43.93 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=37.3
Q ss_pred CccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCCCCCCCchHHHHHHHHHhccCCCCCCcE-EEEE
Q 014461 186 DTQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVHRHLTSPDSRVIRLIERMGKQAPPKQKR-VLCM 264 (424)
Q Consensus 186 ~~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~~~~~~~~~~~~~~l~~~~~~~~~~~p~-ilV~ 264 (424)
.+.++++||||..... .+ .. . .....+|.+++++..+...-.....+.+.+..+... .+.++ -+|+
T Consensus 115 ~yD~iiiD~~~~~~~~-~~--------~~-~-~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~--~~~~~~gvv~ 181 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCG-GF--------AM-P-IREGKAQEIYIVASGEMMALYAANNISKGIQKYAKS--GGVRLGGIIC 181 (269)
T ss_dssp TCSEEEEEEECSSCST-TT--------TH-H-HHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTT--BBCEEEEEEE
T ss_pred CCCEEEEeCCchhhhh-hh--------hh-h-hhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhc--CCCcEEEEEe
Confidence 4679999999854211 00 00 0 012457999999887421001111234445544321 12443 5889
Q ss_pred ecCCCC
Q 014461 265 NKVDLV 270 (424)
Q Consensus 265 NK~Dl~ 270 (424)
|+++..
T Consensus 182 N~~~~~ 187 (269)
T 1cp2_A 182 NSRKVA 187 (269)
T ss_dssp ECCSSS
T ss_pred ecCCcc
Confidence 999753
No 400
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.56 E-value=0.043 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|++.|.+|+||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999863
No 401
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.51 E-value=0.037 Score=56.46 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=23.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456689999999999999999999853
No 402
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.50 E-value=0.04 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.50 E-value=0.042 Score=47.63 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|++.|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.47 E-value=0.043 Score=48.55 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 405
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.41 E-value=0.031 Score=50.83 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
++++|++|+|||||++++.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999976
No 406
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.41 E-value=0.035 Score=49.30 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=22.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++-.++++|++|+|||||++.+.+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345667899999999999999999853
No 407
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=93.41 E-value=0.035 Score=57.37 Aligned_cols=27 Identities=15% Similarity=0.434 Sum_probs=23.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 456789999999999999999998853
No 408
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.40 E-value=0.04 Score=46.37 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.38 E-value=0.065 Score=47.23 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+++|.+|+||||+.+.|.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999865
No 410
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.32 E-value=0.045 Score=50.14 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|++.|.||+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.29 E-value=0.044 Score=47.40 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 412
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.29 E-value=0.039 Score=56.87 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.|.|-.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456689999999999999999998743
No 413
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.27 E-value=0.054 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|++.|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 414
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=93.24 E-value=0.04 Score=56.98 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=23.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.+.|-.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 456789999999999999999998743
No 415
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.18 E-value=0.045 Score=47.11 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 416
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.12 E-value=0.21 Score=47.16 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|+||+|||+|+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999864
No 417
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.12 E-value=0.054 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|++.|.+|+||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3577899999999999999999874
No 418
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.12 E-value=0.042 Score=54.50 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=24.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...++-+++++|++|+|||||++.|.+.
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3456788999999999999999999874
No 419
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.046 Score=56.53 Aligned_cols=27 Identities=22% Similarity=0.578 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 346689999999999999999999854
No 420
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.09 E-value=0.035 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.++-.++++|++|+|||||++.+.|-.
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 456789999999999999999998743
No 421
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.08 E-value=0.052 Score=49.41 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.07 E-value=0.045 Score=51.03 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=23.5
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhCC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...++-.++++|+||+|||||++.+.+.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445667899999999999999998864
No 423
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.06 E-value=0.052 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=21.7
Q ss_pred hcccceEEEEEecCCCChhHHHHhHh
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~ 160 (424)
...+..+|+++|.+|+||||++..+.
T Consensus 29 ~~~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 29 RSARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HhcCccEEEEECCCCCcHHHHHHHHH
Confidence 34567999999999999999999874
No 424
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.06 E-value=0.23 Score=46.03 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.2
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|+||+|||++++++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHH
Confidence 356799999999999999999875
No 425
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.05 E-value=0.04 Score=46.90 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
+|+++|++|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 426
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.98 E-value=0.076 Score=50.53 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChhHHHHhHhCC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++++|+||+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999863
No 427
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.93 E-value=1.3 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=21.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+.-|++.|+||+|||+|+.++.+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHh
Confidence 4566799999999999999999975
No 428
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.93 E-value=0.053 Score=48.95 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
++..|++.|++|+||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.90 E-value=0.042 Score=55.06 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
-.++++|++|+|||||++.|.|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 5689999999999999999986
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.89 E-value=0.052 Score=56.18 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=23.5
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCCc
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
..+-.++++|++|+|||||++.|.|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 456689999999999999999999854
No 431
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.87 E-value=0.046 Score=56.44 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++-.++++|++|+|||||++.|.|-
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999874
No 432
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.86 E-value=0.054 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 433
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.85 E-value=0.061 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=20.7
Q ss_pred ceEEEEEecCCCChhHHHHhHhCC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
...+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 434
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.85 E-value=0.055 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|.++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999874
No 435
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.77 E-value=0.064 Score=47.85 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=20.9
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+...|.++|+|||||+|....|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34455677899999999999998874
No 436
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.75 E-value=0.062 Score=48.21 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..+|++.|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 437
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.75 E-value=0.044 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHhHhC
Q 014461 142 VGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~ 161 (424)
++++|++|+|||||++++.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 99999999999999999986
No 438
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.71 E-value=0.053 Score=47.72 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++-.++++|++|+|||||+..+.+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345567799999999999999999986
No 439
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.70 E-value=0.31 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+.-|++.|+||+|||+|+.++.+
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999999975
No 440
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.69 E-value=0.046 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.7
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|+++|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998853
No 441
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.68 E-value=0.058 Score=44.96 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChhHHHHhHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~ 160 (424)
.-.+|+|++|+||||++.++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999976
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.66 E-value=0.068 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
+...|+|.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 443
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.62 E-value=0.055 Score=49.38 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|+++|++|+|||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 444
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.52 E-value=0.07 Score=51.77 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.7
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+..++++|++|+|||||++.|.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 44566899999999999999999985
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.52 E-value=0.059 Score=45.51 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=18.9
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 446
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.52 E-value=0.061 Score=54.84 Aligned_cols=26 Identities=27% Similarity=0.567 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
++-.++++|++|+|||||++.|.|..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999854
No 447
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.44 E-value=0.055 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|+++|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999999864
No 448
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.43 E-value=0.056 Score=48.37 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++-.++++|++|+|||||+..+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 345667899999999999999999986
No 449
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=92.42 E-value=0.22 Score=47.96 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEEEEecCCCChhHHHHhHh
Q 014461 141 AVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~ 160 (424)
-.+|+|++|+|||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.37 E-value=0.065 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
+-.++++|++|+|||||++.|.|..
T Consensus 312 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 312 GEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999854
No 451
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.30 E-value=0.26 Score=48.59 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+.-|++.|+||+|||+|+.++.+
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 34456799999999999999999975
No 452
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.08 E-value=0.079 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|++.|.+|+||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998853
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=92.04 E-value=0.074 Score=55.00 Aligned_cols=25 Identities=24% Similarity=0.656 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
+-.++++|++|+|||||++.|.|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4468999999999999999999854
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.92 E-value=0.091 Score=47.17 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=22.3
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++..|+++|.+|+||||+.+.|.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445677899999999999999999864
No 455
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.92 E-value=0.096 Score=48.60 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=22.6
Q ss_pred ccEEEEeCCCcccCCCCCChhhhhhHHHHHHhhcccccEEEEEEeCC
Q 014461 187 TQICIFDTPGLMLNKSGYSHKDVKVRVESAWSAVNLFEVLMVVFDVH 233 (424)
Q Consensus 187 ~~i~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~aD~vl~VvD~~ 233 (424)
+.++++|||+.... .+...+..+|.+++++..+
T Consensus 104 yD~viiD~p~~~~~--------------~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 104 CDFILIDTPGGDSA--------------ITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp CSEEEEECCSSCCH--------------HHHHHHHTCSEEEEEEESS
T ss_pred CCEEEEcCCCCccH--------------HHHHHHHHCCEEEEEEcCC
Confidence 56899999986421 1123355679999999874
No 456
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.80 E-value=0.099 Score=45.59 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.8
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.....|++.|.+|+||||+.+.|..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999864
No 457
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.77 E-value=0.077 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+++.|++|+|||+|+..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998865
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.72 E-value=0.14 Score=44.83 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.+..|+|+|++|+|||||...|....
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 35668999999999999999997643
No 459
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.67 E-value=0.27 Score=47.14 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|++.|+||+|||+|+.++..
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHH
Confidence 34589999999999999999875
No 460
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.61 E-value=0.097 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.309 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|++|+|||||+..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 461
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.57 E-value=2.2 Score=41.81 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+.-|++.|+||+|||+|+.++.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHH
Confidence 3456699999999999999999975
No 462
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.54 E-value=0.084 Score=53.90 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=23.4
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++..++++|.+|+|||||++.|.+.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 446778999999999999999999764
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.50 E-value=0.085 Score=48.69 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=22.0
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++-.++++|++|+|||||+..+.+
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4566789999999999999999886
No 464
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.48 E-value=0.091 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEEecCCCChhHHHHhHhCCcc
Q 014461 141 AVGIIGAPNAGKSSIINYMVGTKV 164 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~~~~ 164 (424)
.++++|++|+|||||++.|.|...
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 479999999999999999998543
No 465
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.46 E-value=0.63 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|+||+|||+|+.++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 466
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.44 E-value=0.091 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+++.|+||+|||||++++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 34599999999999999999975
No 467
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.23 E-value=0.18 Score=41.52 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....|.+.|++|+|||++..++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 455699999999999999999864
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.23 E-value=0.11 Score=45.07 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=20.1
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+.+.|++|+|||+|+.++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999999999875
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.22 E-value=0.077 Score=60.02 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++-+|++||++|+|||||++.|.+-
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcC
Confidence 45678999999999999999999863
No 470
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.19 E-value=0.13 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|++.|.+|+||||+++.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 471
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.19 E-value=0.48 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=21.0
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
....+++.|++|+|||+|+.++..
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 472
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.14 E-value=0.09 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+|.|.+|+||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 473
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.11 E-value=0.12 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.7
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..|++.|.||+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 474
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.99 E-value=0.13 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+++..|+|-|.+|+||||+++.|..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4678899999999999999999863
No 475
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.91 E-value=0.15 Score=43.72 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
+.-|++.|++|+|||||.-.|....
T Consensus 16 G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 4568999999999999999987543
No 476
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.88 E-value=0.13 Score=44.65 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.|++.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 477
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.71 E-value=0.11 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...+++.|+||+||||++.+|..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 344589999999999999888764
No 478
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=90.64 E-value=0.018 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHhHhCCc
Q 014461 142 VGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 142 v~vvG~~~~GKStLin~l~~~~ 163 (424)
++|+|++|+|||||++++.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999998743
No 479
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.61 E-value=0.11 Score=56.43 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=22.4
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
++-.++++|++|+|||||++.|.++.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45578999999999999999998643
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.57 E-value=0.3 Score=45.36 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=20.4
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+++.|+||+|||+++.++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 35799999999999999999875
No 481
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.54 E-value=0.074 Score=57.78 Aligned_cols=26 Identities=38% Similarity=0.618 Sum_probs=22.6
Q ss_pred cceEEEEEecCCCChhHHHHhHhCCc
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
.+-.++++|++|+|||||++.|.|..
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999853
No 482
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.47 E-value=0.13 Score=58.07 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.3
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
+++-.++++|++|+|||||++.|.|.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccc
Confidence 45678999999999999999999874
No 483
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.46 E-value=0.15 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..-|+|+|++|+|||||...|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 45689999999999999999974
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.44 E-value=0.13 Score=45.10 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChhHHHHhHh
Q 014461 140 VAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~ 160 (424)
.-.+|+|++|+||||++.++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 456899999999999999875
No 485
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.36 E-value=0.092 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=17.9
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+...|+|.|++|+||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 486
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.28 E-value=0.14 Score=49.16 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=23.2
Q ss_pred cccceEEEEEecCCCChhHHHHhHhCC
Q 014461 136 DQKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 136 ~~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
..++-.+.++|++|+|||||+..+.+.
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 446678899999999999999999863
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.24 E-value=0.16 Score=45.37 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...++-.++++|+||+|||||+..++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 344566789999999999999887753
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.20 E-value=0.14 Score=46.02 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=19.1
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.++..|+|.|.+|+||||+++.|..
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999864
No 489
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=90.14 E-value=0.2 Score=47.18 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhCCc
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVGTK 163 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~~~ 163 (424)
+.-|++.|++|+||||+...|....
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 5679999999999999999998654
No 490
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.14 E-value=0.3 Score=44.87 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.4
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
.....+.+.|+||+|||+|+.++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHH
Confidence 3456699999999999999999864
No 491
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.06 E-value=0.21 Score=41.03 Aligned_cols=23 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...|.+.|++|+|||++..++..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 45699999999999999999864
No 492
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.05 E-value=0.18 Score=45.55 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=21.8
Q ss_pred hcccceEEEEEecCCCChhHHHHhHhC
Q 014461 135 EDQKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 135 ~~~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+++..|++.|.+|+||||+++.|..
T Consensus 23 ~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 23 NAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp ---CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999999864
No 493
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.01 E-value=0.13 Score=45.23 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.1
Q ss_pred ceEEEEEecCCCChhHHHHhHhC
Q 014461 139 SVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 139 ~~~v~vvG~~~~GKStLin~l~~ 161 (424)
+..|++.|.+|+||||+...|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 494
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.94 E-value=0.19 Score=44.63 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
++..|+|-|.+|+||||+++.|..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~ 25 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVE 25 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 495
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.84 E-value=0.48 Score=44.13 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.6
Q ss_pred ccceEEEEEecCCCChhHHHHhHhC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+..+++.|+||+|||+|++++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3456799999999999999999875
No 496
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=89.75 E-value=0.16 Score=44.09 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=19.0
Q ss_pred EEEEEecCCCChhHHHHhHhC
Q 014461 141 AVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 141 ~v~vvG~~~~GKStLin~l~~ 161 (424)
.+.+.|++|+|||+|+..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999874
No 497
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=89.74 E-value=0.069 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred cceEEEEEecCCCChhHHHHhHh
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMV 160 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~ 160 (424)
.+ .++++|++|+|||||+++|.
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHH
T ss_pred CC-cEEEECCCCCCHHHHHHHHH
Confidence 44 88999999999999998874
No 498
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.71 E-value=0.16 Score=44.70 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChhHHHHhHhC
Q 014461 140 VAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 140 ~~v~vvG~~~~GKStLin~l~~ 161 (424)
..+++.|++|+|||||+..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 499
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=89.68 E-value=0.15 Score=57.49 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.9
Q ss_pred ccceEEEEEecCCCChhHHHHhHhCC
Q 014461 137 QKSVAVGIIGAPNAGKSSIINYMVGT 162 (424)
Q Consensus 137 ~~~~~v~vvG~~~~GKStLin~l~~~ 162 (424)
.++-.++++|++|+|||||++.|.|.
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45668999999999999999999874
No 500
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.62 E-value=0.18 Score=45.21 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.1
Q ss_pred cceEEEEEecCCCChhHHHHhHhC
Q 014461 138 KSVAVGIIGAPNAGKSSIINYMVG 161 (424)
Q Consensus 138 ~~~~v~vvG~~~~GKStLin~l~~ 161 (424)
...+.+++|.||+||||+...|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 357899999999999999998864
Done!