BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014462
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IAI|I Chain I, Idiotype-Anti-Idiotype Fab Complex
 pdb|1AIF|H Chain H, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
 pdb|1AIF|B Chain B, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
          Length = 218

 Score = 30.0 bits (66), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 277 LLYYAIGWPGE-IYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSL 335
           L YYA+ + G+   VT      +  + + + P +A++   + + G L        P    
Sbjct: 103 LFYYAVDYWGQGTSVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGY-FPEPVTVT 161

Query: 336 IFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC 377
             SG ++SG++ + A  Q+ L    +   +P ++R  ET TC
Sbjct: 162 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSTWRPSETVTC 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,193,465
Number of Sequences: 62578
Number of extensions: 314051
Number of successful extensions: 777
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 22
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)