Query 014462
Match_columns 424
No_of_seqs 266 out of 2065
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 12:00:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 1.4E-14 4.7E-19 145.9 26.5 185 187-410 245-439 (451)
2 4aps_A DI-OR tripeptide H+ sym 99.6 1.5E-13 5.2E-18 140.3 20.6 174 194-406 13-198 (491)
3 3o7q_A L-fucose-proton symport 99.5 5.7E-13 1.9E-17 133.6 22.4 155 187-350 251-409 (438)
4 3o7q_A L-fucose-proton symport 99.5 8.9E-13 3.1E-17 132.1 19.4 143 197-346 29-177 (438)
5 2gfp_A EMRD, multidrug resista 99.5 2.5E-13 8.6E-18 133.8 14.9 169 198-405 4-175 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.5 2.5E-13 8.4E-18 136.6 13.5 174 194-406 28-208 (451)
7 2cfq_A Lactose permease; trans 99.4 1.1E-12 3.9E-17 132.0 15.7 183 187-408 213-403 (417)
8 2xut_A Proton/peptide symporte 99.4 1E-12 3.4E-17 135.5 15.3 171 194-403 12-197 (524)
9 4gc0_A D-xylose-proton symport 99.4 5.1E-11 1.7E-15 121.4 23.2 169 210-411 293-469 (491)
10 4aps_A DI-OR tripeptide H+ sym 99.2 1.4E-09 4.7E-14 110.8 22.7 180 196-410 285-477 (491)
11 2gfp_A EMRD, multidrug resista 99.1 2.9E-10 1E-14 111.7 13.0 154 187-350 192-354 (375)
12 4gc0_A D-xylose-proton symport 99.1 2.8E-09 9.4E-14 108.5 17.0 110 232-348 60-188 (491)
13 2cfq_A Lactose permease; trans 99.0 8.9E-11 3E-15 118.0 1.6 151 190-347 3-163 (417)
14 2xut_A Proton/peptide symporte 98.6 1.8E-07 6E-12 96.0 10.2 154 232-409 340-507 (524)
15 2l8s_A Integrin alpha-1; trans 32.9 84 0.0029 21.5 4.8 31 72-102 8-38 (54)
16 2knc_A Integrin alpha-IIB; tra 30.8 1E+02 0.0034 21.1 5.0 31 71-101 10-40 (54)
17 2knc_B Integrin beta-3; transm 21.3 2.1E+02 0.0073 20.9 5.7 22 383-404 11-32 (79)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.67 E-value=1.4e-14 Score=145.85 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=150.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhh--hhcccCc
Q 014462 187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAI--VRKFAYP 261 (424)
Q Consensus 187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~--g~k~~~~ 261 (424)
.++.++++.+|.+.+..++.......+..++|.+.++ +|++.... +.++.++++.+|+++.|+++||+ ++|+..
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~- 323 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT- 323 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-
Confidence 4567889999999988888888878888899999988 79987654 78888999999999999999999 776433
Q ss_pred hhHHHHHHHHHHH-HHHHHHHhc---hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHH-HHHH
Q 014462 262 RPVAMAVAQVVMA-FALLYYAIG---WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPA-GSLI 336 (424)
Q Consensus 262 r~~~l~~~~~~~~-~~~ll~~~~---~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~l-gs~l 336 (424)
.++..+.. ++.+++... +.+.+.+..++.|++.+..++....++.|.+|.+++|+++++.++...+ |+.+
T Consensus 324 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~ 398 (451)
T 1pw4_A 324 -----GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 398 (451)
T ss_dssp -----HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHH
Confidence 33333333 444444332 4556677888889999999998999999999999999999999999999 9997
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462 337 FSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 410 (424)
Q Consensus 337 ~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~ 410 (424)
+|.+.|.++|..+ |+.+|++.+++++++.++.+++.++.++
T Consensus 399 -~~~~~g~l~~~~g--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 399 -ASAIVGYTVDFFG--------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp -HHHHHHHHHHSSC--------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 8999999999876 9999999999999888877766544443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.56 E-value=1.5e-13 Score=140.35 Aligned_cols=174 Identities=13% Similarity=0.131 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhcHHHHHHH------cCCCchhH--HHHHHHHHhhhhhhhhhhhhhh-hhhcccCchhH
Q 014462 194 ADFLLLFFSLVLASGSGLTVIDNLGQICQS------LGYADTSI--YVSMISIWNFLGRVGGGYFSEA-IVRKFAYPRPV 264 (424)
Q Consensus 194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~------~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~-~g~k~~~~r~~ 264 (424)
+.+|.+++..++.....+.+...++.+.++ +|.+..+. +.+...++..++++.+|+++|| +|||+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~---- 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAV---- 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHH----
Confidence 356777777777777777777778877755 78887654 8899999999999999999999 8998755
Q ss_pred HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcch--hhHHHHHHHHHHHHHHHHHHHHH
Q 014462 265 AMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKS--FGALYNFLTLASPAGSLIFSGVI 341 (424)
Q Consensus 265 ~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~--~g~~~g~~~~~~~lgs~l~~~~l 341 (424)
.++.++.+++.++++. .+.+.+++..++.|++.|...+...++++|+++.++ ++.++++.+.+..+|..+ +|.+
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~ 165 (491)
T 4aps_A 89 --FWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLI 165 (491)
T ss_dssp --HHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred --HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHH
Confidence 6666777777666653 456788889999999999999999999999999988 888999999999999997 9999
Q ss_pred HHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462 342 ASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 406 (424)
Q Consensus 342 ~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~ 406 (424)
+|.+.+..+ |++.|++.+++++++.++.++..+
T Consensus 166 ~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG--------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC--------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh--------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999988766 999999998888877776655533
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.54 E-value=5.7e-13 Score=133.59 Aligned_cols=155 Identities=12% Similarity=0.084 Sum_probs=123.4
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHH-HHHc-CCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCch
Q 014462 187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQI-CQSL-GYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPR 262 (424)
Q Consensus 187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i-~~~~-g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r 262 (424)
+++.++++.+|...+..++..+....+..++|.+ .++. |++.... +.++..+++.+|+++.|+++||+++|+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~-- 328 (438)
T 3o7q_A 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL-- 328 (438)
T ss_dssp HHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 3458889999999999888888888888899999 8775 9887654 77888999999999999999999987643
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462 263 PVAMAVAQVVMAFALLYYAIGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 342 (424)
Q Consensus 263 ~~~l~~~~~~~~~~~ll~~~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~ 342 (424)
.++.++.+++.+++.........+..++.|++.+..++...+++.|.+|++ ++.+.++.. ...+|+.+ +|.+.
T Consensus 329 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~-~~~~~ 401 (438)
T 3o7q_A 329 ----AAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGI-VTPVM 401 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHH-HHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHH-HHHHH
Confidence 445555555555544433333455568889999999999999999999865 888888877 56688887 89999
Q ss_pred HHHHhhhh
Q 014462 343 SGIYDYYA 350 (424)
Q Consensus 343 g~l~d~~~ 350 (424)
|.++|..+
T Consensus 402 g~l~~~~g 409 (438)
T 3o7q_A 402 GFVSDAAG 409 (438)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99999876
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.49 E-value=8.9e-13 Score=132.15 Aligned_cols=143 Identities=15% Similarity=0.033 Sum_probs=116.6
Q ss_pred HHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHH
Q 014462 197 LLLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMA 274 (424)
Q Consensus 197 wll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~ 274 (424)
+.+...+++...........+|.+.+++|.+..+. +.+...++..++.+.+|+++||+|||+.+ .++.++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l------~~~~~~~~ 102 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGI------ITGLFLYA 102 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHH------HHHHHHHH
Confidence 33344444433333444556788888999988765 88999999999999999999999998755 66666666
Q ss_pred HHHHHH---H-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462 275 FALLYY---A-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 346 (424)
Q Consensus 275 ~~~ll~---~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~ 346 (424)
++.+++ . ..+.+.+++..++.|++.|..++...++++|+++.++|+...++.+.+..+|..+ ++.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 103 LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 766665 4 3456788889999999999999999999999999999999999999999999997 899999887
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.49 E-value=2.5e-13 Score=133.79 Aligned_cols=169 Identities=10% Similarity=0.131 Sum_probs=136.6
Q ss_pred HHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHH
Q 014462 198 LLFFSLVLASGSGLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAF 275 (424)
Q Consensus 198 ll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~ 275 (424)
.+....++.......+...+|.+.+++|.+..+. ..+...++..++.+..|+++||+|||+.+ ..+.++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~ 77 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFML 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHH
Confidence 3444444444444455566788888899987654 88899999999999999999999999877 566666666
Q ss_pred HHHHHH-hchhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 014462 276 ALLYYA-IGWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQA 354 (424)
Q Consensus 276 ~~ll~~-~~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~ 354 (424)
+.++.. ..+.+.+++..++.|++.+..++...++++|.+++++|++..++.+....+|..+ +|.+++.+.+..+
T Consensus 78 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~---- 152 (375)
T 2gfp_A 78 ATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTMWN---- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCHHH----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcc----
Confidence 666554 3456678889999999999999999999999999999999999999999999997 9999999888766
Q ss_pred hhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 014462 355 GLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVV 405 (424)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~ 405 (424)
|+..|++.+.++++..+......
T Consensus 153 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 175 (375)
T 2gfp_A 153 ----------------------------WRACYLFLLVLCAGVTFSMARWM 175 (375)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHCCCCCSS
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999888877665444333
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=2.5e-13 Score=136.61 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhcHHHHHHHcCCCchh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHH
Q 014462 194 ADFLLLFFSLVLASGSGLTVIDNLGQICQSLGYADTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQV 271 (424)
Q Consensus 194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~~g~s~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~ 271 (424)
+.++.+++..++.......+...+|.+.+++ .+..+ .+.+...++..++.+.+|+++||+|||+.+ .++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l------~~~~~ 100 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL------PAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHH------HHHHH
Confidence 3444555555544444444555677888888 77654 388899999999999999999999998744 56666
Q ss_pred HHHHHHHHHHh-----chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014462 272 VMAFALLYYAI-----GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIY 346 (424)
Q Consensus 272 ~~~~~~ll~~~-----~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~ 346 (424)
+.+++.++++. .+.+.+++..++.|++.|..++...++++|+++.++|+++.++.+.+..+|..+ +|.++|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 179 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 66666666544 356678889999999999999999999999999999999999999999999997 899999887
Q ss_pred hhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhh
Q 014462 347 DYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVH 406 (424)
Q Consensus 347 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~ 406 (424)
+..+ .|+++|++.++++++..++.++..+
T Consensus 180 ~~~g-------------------------------~w~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 180 AWFN-------------------------------DWHAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp HHTC-------------------------------CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred HHhc-------------------------------cHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6544 1899999999888877766655543
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.44 E-value=1.1e-12 Score=131.96 Aligned_cols=183 Identities=10% Similarity=0.045 Sum_probs=134.1
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCC---chh--HHHHHHHHHhhhhhhhhhhhhhhhhhcccC
Q 014462 187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYA---DTS--IYVSMISIWNFLGRVGGGYFSEAIVRKFAY 260 (424)
Q Consensus 187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s---~~~--~~~sl~si~~~~gr~~~G~lsd~~g~k~~~ 260 (424)
.++.++++++|.+.+..++.......+..++|.++++ ++.. ... ...++..+++.++.+..|+++||++||+.+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l 292 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL 292 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 4567889999877666554444444455668887765 3322 111 256667788889999999999999987643
Q ss_pred chhHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHH-HHHHHHHHHHHH
Q 014462 261 PRPVAMAVAQVVMAFALLYYAI-GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFL-TLASPAGSLIFS 338 (424)
Q Consensus 261 ~r~~~l~~~~~~~~~~~ll~~~-~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~-~~~~~lgs~l~~ 338 (424)
.++.++++++.+++.. .+.+.+.+..++.+++.+...+....+++|.+|++.+|+++++. +....+|+.+ +
T Consensus 293 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-g 365 (417)
T 2cfq_A 293 ------LLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-M 365 (417)
T ss_dssp ------HHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-H
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-h
Confidence 4455555555544443 34455666667778888777777889999999999999999994 7888899997 9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014462 339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRT 408 (424)
Q Consensus 339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~ 408 (424)
|.+.|.++|..+ |..+|.+.+++++++.++.+.+.+++
T Consensus 366 p~l~G~l~~~~g--------------------------------~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 366 SVLAGNMYESIG--------------------------------FQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp THHHHTHHHHSH--------------------------------HHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred hhhHHHHHHhcC--------------------------------cHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999998766 88999999999888887766544433
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.44 E-value=1e-12 Score=135.51 Aligned_cols=171 Identities=12% Similarity=0.107 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cC------CCchhH--HHHHHHHHhhhhhhhhhhhhhhh-hhcccCchh
Q 014462 194 ADFLLLFFSLVLASGSGLTVIDNLGQICQS-LG------YADTSI--YVSMISIWNFLGRVGGGYFSEAI-VRKFAYPRP 263 (424)
Q Consensus 194 ~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g------~s~~~~--~~sl~si~~~~gr~~~G~lsd~~-g~k~~~~r~ 263 (424)
+.+|.+++..++.....+++...++.+.++ +| ++..+. +.+...++..++.+.+|+++||+ |||+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~--- 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI--- 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH---
Confidence 456777777777777777777788877654 78 876544 88899999999999999999999 988754
Q ss_pred HHHHHHHHHHHHHHHHHH-hc-hhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHH---HHHHHHHHHHHHH
Q 014462 264 VAMAVAQVVMAFALLYYA-IG-WPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNF---LTLASPAGSLIFS 338 (424)
Q Consensus 264 ~~l~~~~~~~~~~~ll~~-~~-~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~---~~~~~~lgs~l~~ 338 (424)
.++.++.+++.+++. .. +.+.+++..++.|++.|...+...++++|.++.+++++..++ .+.+..+|+.+ +
T Consensus 89 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 89 ---LWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp ---HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred ---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 556666666666655 34 567788899999999999999999999999999999765555 88999999997 8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 014462 339 GVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLI 403 (424)
Q Consensus 339 ~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~ 403 (424)
|.+.|.+.+..+ |++.|++.+++++++.++.++
T Consensus 165 ~~~~~~l~~~~g--------------------------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKNFG--------------------------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHTSC--------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcccc--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999887655 999999998887776665543
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.38 E-value=5.1e-11 Score=121.40 Aligned_cols=169 Identities=11% Similarity=-0.012 Sum_probs=114.6
Q ss_pred HHHHHhcHHHHHHHcCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH----hc
Q 014462 210 GLTVIDNLGQICQSLGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA----IG 283 (424)
Q Consensus 210 ~~~~~~~l~~i~~~~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~----~~ 283 (424)
...+..+.+.+.+..+.+.... ...+.++...++.++++++.||+|||+.. ..+...++++.+.+. ..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~------~~~~~~~~~~~~~l~~~~~~~ 366 (491)
T 4gc0_A 293 INVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ------IIGALGMAIGMFSLGTAFYTQ 366 (491)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchh------ccchHHHHHHHHHHHHHHhcc
Confidence 3445556777778888776543 66677888999999999999999998644 333333333333322 11
Q ss_pred -hhHHHHHHHHHHHHHhhh-hHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcc
Q 014462 284 -WPGEIYVTTVLVGLSYGA-HWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYN 361 (424)
Q Consensus 284 -~~~~l~~~~~l~G~~~G~-~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~ 361 (424)
......+...+...+++. ..++.+.+.+|+||++.|+++.++.+....+++++ ++.+...+.+....... .
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~~------~ 439 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVAH------F 439 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHHH------H
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh------h
Confidence 122222233333333333 33566789999999999999999999999999997 78777766554321100 0
Q ss_pred CCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 014462 362 GNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKSV 411 (424)
Q Consensus 362 ~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~~ 411 (424)
.+..+|++.+++++++.+..+++..+||..
T Consensus 440 --------------------~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 440 --------------------HNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred --------------------hhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 156789999999999999888888888764
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.21 E-value=1.4e-09 Score=110.83 Aligned_cols=180 Identities=13% Similarity=0.046 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCc--hhHHHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHH
Q 014462 196 FLLLFFSLVLASGSGLTVIDNLGQICQS-LGYAD--TSIYVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVV 272 (424)
Q Consensus 196 fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~--~~~~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~ 272 (424)
++.++...++...........++.+.++ .+.+. ...+.++.++...++.++.|+++||++||+.... ..+.++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~-~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSP-TKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCch-HHHHHHHHH
Confidence 3444444444444444455667777776 56652 3347778888889999999999999998864322 223345555
Q ss_pred HHHHHHHHHh----------chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014462 273 MAFALLYYAI----------GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIA 342 (424)
Q Consensus 273 ~~~~~ll~~~----------~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~ 342 (424)
++++.+++.. .+...+.+..++.|++.+...+...+++.|.+|.+++|++.++.++...+|+.+ ++.+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~~~ 442 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQLV 442 (491)
T ss_dssp HHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHHHG
T ss_pred HHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5555444332 144566778889999999989999999999999999999999999999999997 89887
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcccCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 014462 343 SGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTCLGSICYSITCGIMAGLCIIAMVMSLIVVHRTKS 410 (424)
Q Consensus 343 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~~ 410 (424)
|.+.|. + +...|.+.+++++++.++.+++.++.++
T Consensus 443 ~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 443 TLYNAK-S--------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp GGGGGS-S--------------------------------TTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HHHhcc-c--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 2 6778888888888887777666555444
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.13 E-value=2.9e-10 Score=111.68 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=118.3
Q ss_pred HHHhhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchh
Q 014462 187 LPQALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRP 263 (424)
Q Consensus 187 ~~~~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~ 263 (424)
+++.++++++|...+..++.......+..++|.+.++ +|++.... +.+...++..++++..|++.||++++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~----- 266 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM----- 266 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH-----
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 4568889999998888888777777777788888776 78776543 778888999999999999999998621
Q ss_pred HHHHHHHHH-HHHHHH--HHHh---chhHHHHHHHHHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHH
Q 014462 264 VAMAVAQVV-MAFALL--YYAI---GWPGEIYVTTVLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIF 337 (424)
Q Consensus 264 ~~l~~~~~~-~~~~~l--l~~~---~~~~~l~~~~~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~ 337 (424)
..+..+ ...+.. .+.. .+.+.+++..++.|++.|..++...+.+.|.+| +++|+..++.+....+|+.+
T Consensus 267 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~- 341 (375)
T 2gfp_A 267 ---WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV- 341 (375)
T ss_dssp ---HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-
Confidence 111111 111111 1111 234556678888999999999999999999998 89999999999999999997
Q ss_pred HHHHHHHHHhhhh
Q 014462 338 SGVIASGIYDYYA 350 (424)
Q Consensus 338 ~~~l~g~l~d~~~ 350 (424)
+|.+.|.++|..+
T Consensus 342 ~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 342 LASLSAMLPQTGQ 354 (375)
T ss_dssp CSTTCTHHHHHHH
T ss_pred HHHHHHHHhcCCc
Confidence 8999999987655
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=2.8e-09 Score=108.48 Aligned_cols=110 Identities=23% Similarity=0.233 Sum_probs=91.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHHHHHHHHHHHHHHHHH-------------------hchhHHHHHHH
Q 014462 232 YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAMAVAQVVMAFALLYYA-------------------IGWPGEIYVTT 292 (424)
Q Consensus 232 ~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l~~~~~~~~~~~ll~~-------------------~~~~~~l~~~~ 292 (424)
+++...++.++|.+++|+++||+|||+.+ .++.+++.++.++.+ ..+.+.++++.
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l------~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSL------KIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHH------HHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 67788899999999999999999999755 566666666665543 23466789999
Q ss_pred HHHHHHhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014462 293 VLVGLSYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDY 348 (424)
Q Consensus 293 ~l~G~~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~ 348 (424)
++.|++.|+..+..+++++|..|+++||...++...+..+|..+ +..+...+.+.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~~ 188 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhccc
Confidence 99999999999999999999999999999999999999999886 66555554443
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.97 E-value=8.9e-11 Score=118.02 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=97.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhHHHHHhcHHHHHHH-cCCCchhH--HHHHHHHHhhhhhhhhhhhhhhhhhcccCchhHHH
Q 014462 190 ALMKADFLLLFFSLVLASGSGLTVIDNLGQICQS-LGYADTSI--YVSMISIWNFLGRVGGGYFSEAIVRKFAYPRPVAM 266 (424)
Q Consensus 190 ~l~~~~fwll~~~~~~~~~~~~~~~~~l~~i~~~-~g~s~~~~--~~sl~si~~~~gr~~~G~lsd~~g~k~~~~r~~~l 266 (424)
.++++++|.+....++.......+...+|.+.++ +|.++.+. +.+...++..++++.+|+++||+|||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 6889999988887777666655666788888765 79887654 88899999999999999999999998755
Q ss_pred HHHHHHHHH---HHHHHHhchh--HHHHHHHHHHHHHhhhhHhHHHHHHHHhhC--cchhhHHHHHHHHHHHHHHHHHHH
Q 014462 267 AVAQVVMAF---ALLYYAIGWP--GEIYVTTVLVGLSYGAHWAIVPAAASELFG--LKSFGALYNFLTLASPAGSLIFSG 339 (424)
Q Consensus 267 ~~~~~~~~~---~~ll~~~~~~--~~l~~~~~l~G~~~G~~~~~~~~~~se~fg--~~~~g~~~g~~~~~~~lgs~l~~~ 339 (424)
.++.++.++ +......... ..++....+.|++.|..++.....+.++.+ .++++..++.......+|..+ +|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~-~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL-GA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHH-HH
Confidence 333322221 1111111100 011222333333333333333333333332 245677788888888999987 89
Q ss_pred HHHHHHHh
Q 014462 340 VIASGIYD 347 (424)
Q Consensus 340 ~l~g~l~d 347 (424)
.+.|.+.+
T Consensus 156 ~l~~~l~~ 163 (417)
T 2cfq_A 156 SIVGIMFT 163 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998876
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.55 E-value=1.8e-07 Score=96.04 Aligned_cols=154 Identities=12% Similarity=0.006 Sum_probs=93.4
Q ss_pred HHHHHHHHhhhhhhhhhhhh----hhhhhcccCchhHHHHHHHHHHHHHHHHHHh----------chhHHHHHHHHHHHH
Q 014462 232 YVSMISIWNFLGRVGGGYFS----EAIVRKFAYPRPVAMAVAQVVMAFALLYYAI----------GWPGEIYVTTVLVGL 297 (424)
Q Consensus 232 ~~sl~si~~~~gr~~~G~ls----d~~g~k~~~~r~~~l~~~~~~~~~~~ll~~~----------~~~~~l~~~~~l~G~ 297 (424)
+.+...++..++.++.+++. +|.++|... ...+.++.++++++.+++.. .+.+.+.+..++.|+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 417 (524)
T 2xut_A 340 MQALNPLLVMLLIPFNNFVLYPAIERMGVKLTA--LRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF 417 (524)
T ss_dssp HHTTSGGGHHHHGGGTTTC------------CC--HHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence 44444455555555555553 333322211 12234555666666555433 234556778889999
Q ss_pred HhhhhHhHHHHHHHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCCcccCCCCCCcc
Q 014462 298 SYGAHWAIVPAAASELFGLKSFGALYNFLTLASPAGSLIFSGVIASGIYDYYAEKQAGLLWKYNGNMLPVSFRDQETPTC 377 (424)
Q Consensus 298 ~~G~~~~~~~~~~se~fg~~~~g~~~g~~~~~~~lgs~l~~~~l~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 377 (424)
+.+...+...+++.|.+|.+.+|+..|+.++...+|+.+ +|.+.|.+.|..+.. |... .-
T Consensus 418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~-g~~~~g~~~~~~~~~-----~~~~--------------~~ 477 (524)
T 2xut_A 418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLW-VLLANVSVKSPTVTE-----QIVQ--------------TG 477 (524)
T ss_dssp HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHH-HHHHHHHTTSCHHHH-----HHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHH-HHHHHHHhccccccc-----cccc--------------cc
Confidence 999999999999999999999999999999999999998 999999988754310 0000 00
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014462 378 LGSICYSITCGIMAGLCIIAMVMSLIVVHRTK 409 (424)
Q Consensus 378 ~g~~c~~~~f~i~a~~~~~~~~l~~~l~~~~~ 409 (424)
.| -.+..|++.+++++++.++.+++.++++
T Consensus 478 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 478 MS--VTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp SC--HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred cc--ccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 0134488888888888777666555443
No 15
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=32.95 E-value=84 Score=21.46 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhHhhhhhccCC
Q 014462 72 NQNVLTVLAVGLIIIILLPVTIPVVLVFFTE 102 (424)
Q Consensus 72 s~~~~~~~~~v~~~ll~~Pl~i~~~~~~~~~ 102 (424)
.-+.++...++++++|.+-.++.-|..+|..
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 3344455555555555555555666665653
No 16
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=30.84 E-value=1e+02 Score=21.09 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=17.0
Q ss_pred cchHHHHHHHHHHHHHHHhhhhHhhhhhccC
Q 014462 71 ANQNVLTVLAVGLIIIILLPVTIPVVLVFFT 101 (424)
Q Consensus 71 ~s~~~~~~~~~v~~~ll~~Pl~i~~~~~~~~ 101 (424)
..-+.++...++++++|.+-.++.-|..+|.
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK~GFFk 40 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWKVGFFK 40 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 4444445555555555555455566666564
No 17
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.35 E-value=2.1e+02 Score=20.92 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 014462 383 YSITCGIMAGLCIIAMVMSLIV 404 (424)
Q Consensus 383 ~~~~f~i~a~~~~~~~~l~~~l 404 (424)
+..+..+.+++.++|+++.+++
T Consensus 11 ~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777665544
Done!