BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014463
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 359 bits (922), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/424 (41%), Positives = 260/424 (61%), Gaps = 16/424 (3%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
+N +T + A R LG + + P R + V + D+GS+ F G+R QH++
Sbjct: 15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
A GP KGG+R+HPEV+ ++V AL+ MT K +A +PYGG KGGI C+PR +S ELERL
Sbjct: 75 AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGH-SPAVVTGKPIVSIKRE 179
+R + + I ++G +D+PAPD+ TNSQ MAW++DEYS+ SP +TGKP+V
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLV----- 189
Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
LGGS GRE AT GV E + + G + N + IQGFGN GS+ AKF
Sbjct: 190 ---------LGGSQGRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFM 240
Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVL 299
H+ G KV+ +SD G + NP+G+D+P + + + +LL +CD+L
Sbjct: 241 HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNL-FTDVITNEELLEKDCDIL 299
Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
VP A+ + +NA +++A ++E AN PT +A +IL+++GV+++PDI A++GGVTVSY
Sbjct: 300 VPAAISNQITAKNAHNIQASIVVERANGPTTIDATKILNERGVLLVPDILASAGGVTVSY 359
Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
FEWVQN QG+ W EE+V +L+ M+S+F+ I TH ++R+ A+ G+ + A+A+
Sbjct: 360 FEWVQNNQGYYWSEEEVAEKLRSVMVSSFETIYQTAATHKVDMRLAAYMTGIRKSAEASR 419
Query: 420 LRGW 423
RGW
Sbjct: 420 FRGW 423
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 358 bits (918), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS +ELERL+R F +I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
+IG + D+PAPD+ TN+ +AW +D YS GH+ +VTGKP+ +
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPV--------------E 177
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
LGGS GRE ATG GV + G A+QGFGNVG +AA E G KVV
Sbjct: 178 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 237
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
AVSD G I NP G DV + G + +LL + D+LVP AL G
Sbjct: 238 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 297
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
++ NA +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 298 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 357
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
F W+ ++V + L++ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 358 SFFWDLDQVRNALEKMMKKAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 357 bits (917), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 13 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS +ELERL+R F +I
Sbjct: 73 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
+IG + D+PAPD+ TN+ +AW +D YS GH+ +VTGKP+ +
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPV--------------E 178
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
LGGS GRE ATG GV + G A+QGFGNVG +AA E G KVV
Sbjct: 179 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 238
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
AVSD G I NP G DV + G + +LL + D+LVP AL G
Sbjct: 239 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 298
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
++ NA +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 299 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 358
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
F W+ ++V + L++ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 359 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 413
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 339 bits (870), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 188/415 (45%), Positives = 255/415 (61%), Gaps = 16/415 (3%)
Query: 10 NFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGI 69
F AA ++ L+S L L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV +P+GG KGG+ +P++LS ELERL+R F ++I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 130 DLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSP-AVVTGKPIVSIKRETEKQRNKND 188
+IG + D+PAPD+ TN+ +AW +DEY GH+ +VTGKP+ +
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPV--------------E 177
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVV 247
LGGS GRE ATG GV + G A+QGFGNVG +AA E G KVV
Sbjct: 178 LGGSKGREEATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVV 237
Query: 248 AVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGV 307
AVSD G I NP G DV + G + +LL + D+LVP AL G
Sbjct: 238 AVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGA 297
Query: 308 LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ 367
++ NA +KAK ++E AN PT PEADEILS++G++++PDI AN+GGVTVSYFEWVQ++Q
Sbjct: 298 IHAGNAERIKAKAVVEGANGPTTPEADEILSRRGILVVPDILANAGGVTVSYFEWVQDLQ 357
Query: 368 GFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
F W+ ++V + L++ M AF D+ + + +N ++R A+ L ++RVA AT RG
Sbjct: 358 SFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILAIDRVAYATKKRG 412
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 336 bits (862), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 239/419 (57%), Gaps = 18/419 (4%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V + DDGS+ F GFR+Q++ ARGP KGG
Sbjct: 11 KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV +PYGG KGG+ CNP+E+S E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEY---SKFHGHSPAVVTGKPIVSIKRETEKQRN 185
+D+I + D+PAPD+ TN Q MAW++DEY S+ S V+TGKP
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKP------------- 177
Query: 186 KNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF-HEHGG 244
+GG + R AT G + G + AIQG+GN G + AK E+G
Sbjct: 178 -PSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGM 236
Query: 245 KVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCAL 304
KVVAVSD G I NP+G++ DF G + +LL E DVL P A+
Sbjct: 237 KVVAVSDTKGGIYNPDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAI 296
Query: 305 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
V+ K+NA ++KAK + E AN PT PEADEIL +KG++I+PD N+GGVTVSYFEWVQ
Sbjct: 297 EEVITKKNADNIKAKIVAELANGPTTPEADEILYEKGILIIPDFLCNAGGVTVSYFEWVQ 356
Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
NI G W E+ +L + M AF D+ + N N+R A+ + V+RV QA RGW
Sbjct: 357 NITGDYWTVEETRAKLDKKMTKAFWDVYNTHKEKNINMRDAAYVVAVSRVYQAMKDRGW 415
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 336 bits (861), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 238/419 (56%), Gaps = 18/419 (4%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V I DDGS+ F GFR+QH+ ARGP KGG
Sbjct: 12 KQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGG 71
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HP V ALA MTWK AV +PYGG KGGI NP+ELS E ERL R + + +
Sbjct: 72 IRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAV 131
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYS---KFHGHSPAVVTGKPIVSIKRETEKQRN 185
+D+IG D+PAPD+ TN + M W++DEY + G + V+TGKP+
Sbjct: 132 YDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPL------------ 179
Query: 186 KNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH-GG 244
+GGSLGR AT G F G + K A+QG+GN G + AK E G
Sbjct: 180 --SIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGM 237
Query: 245 KVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCAL 304
VVAVSD G I NP+G+D DF G + +LL E DVL P A+
Sbjct: 238 TVVAVSDSRGGIYNPDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAI 297
Query: 305 GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQ 364
V+ ++NA ++KAK + E AN P PEAD+IL +KG++ +PD N+GGVTVSYFEWVQ
Sbjct: 298 EEVITEKNADNIKAKIVAEVANGPVTPEADDILREKGILQIPDFLCNAGGVTVSYFEWVQ 357
Query: 365 NIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
NI G+ W EE+V +L + M AF ++ + N ++R A+ + V+RV QA RGW
Sbjct: 358 NINGYYWTEEEVREKLDKKMTKAFWEVYNTHKDKNIHMRDAAYVVAVSRVYQAMKDRGW 416
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 181/420 (43%), Positives = 242/420 (57%), Gaps = 19/420 (4%)
Query: 9 RNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGG 68
+ AA+ + + + L P R ++V + DDGS+ F GFR+QH+ ARGP KGG
Sbjct: 11 KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV +PYGG KGGI +P++LS E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 129 HDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF-HGHSPA--VVTGKPIVSIKRETEKQRN 185
+D+I + D+PAPD+ TN Q MAW++DEY +PA ++TGKP+
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPL------------ 178
Query: 186 KNDLGGSLGREAATGLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-HG 243
+GGSLGR AT G + EA ++ AIQG+GN G + AK E G
Sbjct: 179 --SIGGSLGRIEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFG 236
Query: 244 GKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCA 303
KVVAVSD G I NP+G++ DF G + +LL E DVL P A
Sbjct: 237 MKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAA 296
Query: 304 LGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWV 363
+ V+ K+NA ++KAK + E AN P PEADEIL +KG++ +PD N+GGVTVSYFEWV
Sbjct: 297 IEEVITKKNADNIKAKIVAEVANGPVTPEADEILFEKGILQIPDFLCNAGGVTVSYFEWV 356
Query: 364 QNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRGW 423
QNI G+ W E+V L + M AF D+ + + N ++R A+ + V RV QA L RGW
Sbjct: 357 QNITGYYWTIEEVRERLDKKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQAMLDRGW 416
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 328 bits (840), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/424 (40%), Positives = 255/424 (60%), Gaps = 17/424 (4%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
++ L +T A LG ++ L P R + V+ + DDGS+ F G+R H++
Sbjct: 15 LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYR-AHND 73
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
+ GP KGGIR+HP V EV AL+ M+ K + +PYGG KGGI C+PR++S ELERL
Sbjct: 74 SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRE 179
+R + + I ++G +DVPAPD+ TNSQ MAW++DEYS+ +SP +TGKP+V
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLV----- 188
Query: 180 TEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF 239
LGGS GRE+AT GV + + G I + +QGFGN GS+ AKF
Sbjct: 189 ---------LGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFM 239
Query: 240 HEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVL 299
H+ G KVV +SD G + +P G+D+ + + +LL +CD+L
Sbjct: 240 HDAGAKVVGISDAYGGLYDPEGLDIDYLLDRRDSFGTVTKLFN-DTITNQELLELDCDIL 298
Query: 300 VPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSY 359
VP A+ + +ENA +++AK ++EAAN PT E +ILS + ++++PD+ A++GGVTVSY
Sbjct: 299 VPAAIENQITEENAHNIRAKIVVEAANGPTTLEGTKILSDRDILLVPDVLASAGGVTVSY 358
Query: 360 FEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATL 419
FEWVQN QGF W EE+V +L++ M+ +F +I M ++R+ A+ +GV ++A+A+
Sbjct: 359 FEWVQNNQGFYWSEEEVEEKLEKMMVKSFNNIYEMANNRRIDMRLAAYMVGVRKMAEASR 418
Query: 420 LRGW 423
RGW
Sbjct: 419 FRGW 422
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/406 (44%), Positives = 240/406 (59%), Gaps = 15/406 (3%)
Query: 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L SL P R + V+ + DDGS+A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 30 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
EV ALA MT K A +PYGG KGGI +PR+LS ELERLTR +T +I L+G RD
Sbjct: 90 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE 196
+PAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIA--------------LGGSLGRR 195
Query: 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI 256
ATG GVF A + G + + AIQGFGNVG+ AA+ FH+HG +VVAV D TG +
Sbjct: 196 DATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV 255
Query: 257 KNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
N GID + + D + LVP AL + ++NA +
Sbjct: 256 YNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRI 315
Query: 317 KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKV 376
+A+ + E AN PT P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+ + W EE++
Sbjct: 316 RARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEI 375
Query: 377 NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
N L+R + +AF+ + + Q LR A+ + RV +A LRG
Sbjct: 376 NARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRG 421
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 326 bits (836), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/406 (44%), Positives = 240/406 (59%), Gaps = 15/406 (3%)
Query: 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L SL P R + V+ + DDGS+A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 46 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRD 137
EV ALA MT K A +PYGG KGGI +PR+LS ELERLTR +T +I L+G RD
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 138 VPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE 196
+PAPD+ T + MAW++D YS G + P VVTGKPI LGGSLGR
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIA--------------LGGSLGRR 211
Query: 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI 256
ATG GVF A + G + + AIQGFGNVG+ AA+ FH+HG +VVAV D TG +
Sbjct: 212 DATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTV 271
Query: 257 KNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV 316
N GID + + D + LVP AL + ++NA +
Sbjct: 272 YNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAALEKQITEQNAWRI 331
Query: 317 KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKV 376
+A+ + E AN PT P AD+IL +KGV+++PD+ AN+GGVTVSYFEWVQ+ + W EE++
Sbjct: 332 RARIVAEGANGPTTPAADDILLEKGVLVVPDVIANAGGVTVSYFEWVQDFNSYFWTEEEI 391
Query: 377 NHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
N L+R + +AF+ + + Q LR A+ + RV +A LRG
Sbjct: 392 NARLERVLRNAFEAVWQVAQEKKIPLRTAAYVVAATRVLEARALRG 437
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 289 bits (739), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/430 (37%), Positives = 226/430 (52%), Gaps = 21/430 (4%)
Query: 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDN 60
+N L A R A LG D + L P R I++ + DDG++ F G+R H +
Sbjct: 5 LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERL 120
A GP KGG+R+HP V+ DEV AL+ MT+K +PYGG KGGI +P ELS ELE+L
Sbjct: 65 AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 121 TRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAV--VTGKPIVSIKR 178
+R + + ++ +G D+PAPD+ TN Q M+W +DEY K +G + TGKP+
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVA---- 180
Query: 179 ETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKF 238
GGS GR ATG GV G + + K A+QGFGNVG++ K
Sbjct: 181 ----------FGGSEGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKN 230
Query: 239 FHEHGGKVVAVSDI-----TGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV 293
GGKV A+++ A+ N NGID F G + +
Sbjct: 231 IERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWT 290
Query: 294 HECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSG 353
E D++VP AL V+ E A + AK + EAAN PT PE D++L+++G+ + PDI NSG
Sbjct: 291 KEYDIIVPAALENVITGERAKTINAKLVCEAANGPTTPEGDKVLTERGINLTPDILTNSG 350
Query: 354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNR 413
GV VSY+EWVQN G+ W E +V + + MM A K + + +N LR + +
Sbjct: 351 GVLVSYYEWVQNQYGYYWTEAEVEEKQEADMMKAIKGVFAVADEYNVTLREAVYMYAIKS 410
Query: 414 VAQATLLRGW 423
+ A LRGW
Sbjct: 411 IDVAMKLRGW 420
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 284 bits (726), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 159/418 (38%), Positives = 227/418 (54%), Gaps = 32/418 (7%)
Query: 19 GLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPD 78
G + L P R + V + D G F G+R+QH + GP KGG+R+HPEV
Sbjct: 22 GFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLA 81
Query: 79 EVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDV 138
+ ALA LMT K ++A +PYGGAKG + +P++LS ELE L+R + + I LIG D+
Sbjct: 82 DDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDI 141
Query: 139 PAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGSLGREA 197
PAPD+GTN+Q MAW++DEYSK G++ P V T KP +L G+ RE
Sbjct: 142 PAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKP--------------PELWGNPVREY 187
Query: 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIK 257
ATG GV AT + + I AIQG GNVG W A + + G KV+AVSDI G
Sbjct: 188 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAY 247
Query: 258 NPNGIDV-----------PAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGG 306
G++V PA + +A + + D+ VP A+
Sbjct: 248 RKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDA-----IFKLDVDIFVPAAIEN 302
Query: 307 VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
V+ +NA VKA+ ++E AN PT PEA+ IL ++GVV++PDI AN+GGV +SY EWV+N+
Sbjct: 303 VIRGDNAGLVKARLVVEGANGPTTPEAERILYERGVVVVPDILANAGGVIMSYLEWVENL 362
Query: 367 QGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHN-CNLRMGAFTLGVNRVAQATLLRGW 423
Q ++W+EE+ L+ M++ + + Q +R A + R+ A +RGW
Sbjct: 363 QWYIWDEEETRKRLENIMVNNVERVYKRWQREKGWTMRDAAIVTALERIYNAMKIRGW 420
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 254 bits (649), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 191/340 (56%), Gaps = 29/340 (8%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 230
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
SI M FA+QGFGNVG + ++ H G K VAV + G+I NP+GID
Sbjct: 231 SYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKE 290
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
F + +L +CD+L+P A L K NA VKAK I E AN
Sbjct: 291 LEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 349
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
PT PEAD+I ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 350 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 389
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 191/340 (56%), Gaps = 29/340 (8%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E
Sbjct: 180 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 225
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
SI M F +QGFGNVG + ++ H G K +AV + G+I NP+GID
Sbjct: 226 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 285
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
F + +L +CD+L+P A L K NA VKAK I E AN
Sbjct: 286 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 344
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
PT PEAD+I ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 345 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 384
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 190/340 (55%), Gaps = 29/340 (8%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E
Sbjct: 189 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 234
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
SI M F +QGFGNVG + ++ H G K +AV + G+I NP+GID
Sbjct: 235 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 294
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
F + +L +CD+L+P A L K NA VKAK I E AN
Sbjct: 295 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 353
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
PT PEAD+I ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 354 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 393
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 253 bits (645), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/340 (42%), Positives = 190/340 (55%), Gaps = 29/340 (8%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E
Sbjct: 180 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 225
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
SI M F +QGFGNVG + ++ H G K +AV + G+I NP+GID
Sbjct: 226 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE 285
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
F + +L +CD+L+P A L K NA VKAK I E AN
Sbjct: 286 LEDFKLQHGSILGFPKAKPYE-GSILEADCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 344
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
PT PEAD+I ++ ++++PD+Y N+GGVTVSYFEW++N+
Sbjct: 345 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNL 384
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 144/340 (42%), Positives = 188/340 (55%), Gaps = 29/340 (8%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +ELE++TR FT ++ IG DVPAPDM T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFINEA 230
Query: 215 GK-SISNM-------KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266
SI M F +QGFGNVG + ++ H G K + V + G+I NP+GID
Sbjct: 231 SYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKE 290
Query: 267 XXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN 326
F + +L +CD+L+P A L K NA VKAK I E AN
Sbjct: 291 LEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGAN 349
Query: 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
PT PEAD+I ++ ++++PD+Y N+GGVTVSYFEW+ N+
Sbjct: 350 GPTTPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLNNL 389
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/410 (35%), Positives = 207/410 (50%), Gaps = 19/410 (4%)
Query: 14 AARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHP 73
A ++ G+ L P R + + + DDG + F G+R+ HD ARGP KGG+R P
Sbjct: 25 ALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVRLDP 84
Query: 74 EVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIG 133
V + LA MT K AV +P+GGA GGI +P+ LS ELERL R +T ++ LIG
Sbjct: 85 GVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVGLIG 144
Query: 134 IHRDVPAPDMGTNSQTMAWILDEYSKFHGHS-PAVVTGKPIVSIKRETEKQRNKNDLGGS 192
D+ PD+G + Q MAWI+D YS G + P VVTGKP + LGGS
Sbjct: 145 PDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKP--------------HALGGS 190
Query: 193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252
GR+ A GLG EAL G + + +QG G VG+ A G +VVAV+
Sbjct: 191 EGRDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATS 250
Query: 253 TGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN 312
G + P G+DV + ++ E +VLV A G L+ +
Sbjct: 251 MGGMYAPEGLDVAEVLSAYEATGSLPRLD----LAPEEVFGLEAEVLVLAAREGALDGDR 306
Query: 313 AADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
A V+A+ ++E AN +PEA+ L KG +++PD+ + GG+ SY EWVQ++ F W
Sbjct: 307 ARQVQAQAVVEVANFGLNPEAEAYLLGKGALVVPDLLSGGGGLLASYLEWVQDLNMFFWS 366
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQATLLRG 422
E+V + + + + +LRMGA L + R+ +AT LRG
Sbjct: 367 PEEVRERFETRVARVVDAVCRRAERGGLDLRMGALALALERLDEATRLRG 416
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/341 (41%), Positives = 191/341 (56%), Gaps = 31/341 (9%)
Query: 41 IPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGG 100
I +DDGS G+R QH + R P KGGIRY +V DEV ALA LMT+K AV +P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPRELSMSELERLTRVFTQKI--HDLIGIHRDVPAPDMGTNSQTMAWILDEYS 158
AK G+ NP+ + +LE++TR FT ++ IG DVPAP+M T + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH 214
GH + A VTGKPI GG GR +ATG GVF E + E+
Sbjct: 185 STIGHYDINAHACVTGKPISQ--------------GGIHGRISATGRGVFHGIENFI-EN 229
Query: 215 GKSIS---------NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVP 265
+S + FA+QGFGNVG + ++ H G K VAV + G+I NP+GID
Sbjct: 230 ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPK 289
Query: 266 AXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAA 325
F + +L +CD+L+P A L K NA VKAK I E A
Sbjct: 290 ELEDFKLQHGTILGFPKAKIYE-GSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGA 348
Query: 326 NHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI 366
N PT P+AD+I ++ ++++PD+Y N+GGVTVSYF+ ++N+
Sbjct: 349 NGPTTPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNL 389
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 187/412 (45%), Gaps = 28/412 (6%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 49 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLIRPEATGYG 213
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
+ + TEA+L HG M+ ++ G GNV +A + E G +V+ SD +G + + +G
Sbjct: 214 LVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGF 273
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAAD 315
A + + + D+ +PCA L+ + A
Sbjct: 274 TKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQ 333
Query: 316 VKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
+ A K + E AN PT EA E+ + GV+ P AN+GGV S E QN W+
Sbjct: 334 LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGWK 393
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
EKV+ L M + + NL GA +G ++A A + +G
Sbjct: 394 AEKVDARLHHIMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 445
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 183/413 (44%), Gaps = 43/413 (10%)
Query: 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R I+ D G GFR+Q+++ GP KGG+R+HP V+ + L +K
Sbjct: 64 PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 91 TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
++ +P GG KGG +P+ S +E+ + + F + IG + DVPA D+G + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 151 AWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEAL 210
++ +Y K V+TGK I GGS R ATG GV + E +
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNI--------------KWGGSNIRAEATGYGVVYFAENV 229
Query: 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXX 270
L + ++ N K + G GNV + + E G V+ +SD G I PNG
Sbjct: 230 LKDLNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGF-------T 282
Query: 271 XXXXXXXXDFQGGNAMDLNDLLVHE---------------CDVLVPCALGGVLNKENAAD 315
D + + L + L + CD+ PCA +N EN AD
Sbjct: 283 KEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWNIPCDIAFPCATQNEIN-ENDAD 341
Query: 316 V----KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
+ K K I+E AN PT +A L + +++ P AN+GGV VS E QN W
Sbjct: 342 LFIQNKCKMIVEGANMPTHIKALHKLKQNNIILCPSKAANAGGVAVSGLEMSQNSMRLQW 401
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRG 422
++ + +L+ M S ++ + + +L GA G +VA + L +G
Sbjct: 402 THQETDMKLQNIMKSIYEQCHNTSKIYLNESDLVAGANIAGFLKVADSFLEQG 454
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
D+G + + ++ K ++ V TGK + GGSL R ATG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 213
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
G+ + TEA+L HG M+ ++ G GNV +A + E G +V+ SD +G + + +G
Sbjct: 214 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG 273
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
A + + + D+ +PCA L+ + A
Sbjct: 274 FTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAH 333
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
+ A K + E AN PT EA E+ + GV+ P AN+GGV S E QN W
Sbjct: 334 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 393
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
+ EKV+ L M+ DI C H N GA G +VA A L +G
Sbjct: 394 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 168 bits (425), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 52 SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
D+G + + ++ K ++ V TGK + GGSL R ATG
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 216
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
G+ + TEA+L HG M+ ++ G GNV +A + E G +V+ SD +G + + +G
Sbjct: 217 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESG 276
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
A + + + D+ +PCA L+ + A
Sbjct: 277 FTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAH 336
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
+ A K + E AN PT EA E+ + GV+ P AN+GGV S E QN W
Sbjct: 337 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 396
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
+ EKV+ L M+ DI C H N GA G +VA A L +G
Sbjct: 397 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 448
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 184/416 (44%), Gaps = 34/416 (8%)
Query: 22 SKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LER L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAP 141
L T+K A+ +P GG KGG +P+ S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGL 201
D+G + + ++ K ++ V TGK + GGSL R ATG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGL--------------SFGGSLIRPEATGY 213
Query: 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNG 261
G+ + TEA+L HG M+ ++ G GNV +A + E G +V+ SD +G + + +G
Sbjct: 214 GLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESG 273
Query: 262 IDVPAXXXXXXXXXXXXDFQGGNAMDLNDLLVH-------ECDVLVPCALGGVLNKENAA 314
A + + + D+ +PCA L+ + A
Sbjct: 274 FTKEKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAH 333
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMW 371
+ A K + E AN PT EA E+ + GV+ P AN+GGV S E QN W
Sbjct: 334 QLIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW 393
Query: 372 EEEKVNHELKRYMMSAFKDIKTMCQTH-----NCNLRMGAFTLGVNRVAQATLLRG 422
+ EKV+ L M+ DI C H N GA G +VA A L +G
Sbjct: 394 KAEKVDARLHHIML----DIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQG 445
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 123/414 (29%), Positives = 189/414 (45%), Gaps = 30/414 (7%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
+ EA++ ++ A+ GFGNV AAK E G K V +S G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV--------HECDVLVPCALGGVLNKENAA 314
+ + D + + D+++PCA ++ E A
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
+ A K+ IE AN PT EA L ++ +V+ P N+GGV VS FE QN +
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
W E+V+ +L + M + + NL GA +G ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 162 bits (410), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 188/414 (45%), Gaps = 30/414 (7%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
+ EA++ ++ A+ GFGNV AAK E G K V +S G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 DVPAXXXXXXXXXXXXDFQGGNAMDLNDLLV--------HECDVLVPCALGGVLNKENAA 314
+ + D + + D+++PCA ++ E A
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
+ A K+ IE AN PT EA L ++ +V+ P N+GGV VS FE QN +
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
W E+V+ +L + M + + NL GA +G ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/414 (29%), Positives = 186/414 (44%), Gaps = 30/414 (7%)
Query: 24 LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
LER ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 48 LER-MVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTNSQTMAWILDEYSKF-HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLG 202
G ++ + ++ +Y K G V+TGK GGSL R ATG G
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGK--------------ARSFGGSLVRPEATGYG 212
Query: 203 VFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262
+ EA++ ++ A+ GFGNV AAK E G K V +S G I +P GI
Sbjct: 213 SVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGI 272
Query: 263 D--------VPAXXXXXXXXXXXXDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAA 314
+ D G + D+++PCA ++ E A
Sbjct: 273 TTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPCATQNDVDLEQAK 332
Query: 315 DVKA---KFIIEAANHPTDPEADEILSKK-GVVILPDIYANSGGVTVSYFEWVQNIQGFM 370
+ A K+ IE AN PT EA L ++ +V+ P N+GGV V FE QN +
Sbjct: 333 KIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVVGFEMSQNSERLS 392
Query: 371 WEEEKVNHELKRYMMSAFKDIKTMCQTHNC--NLRMGAFTLGVNRVAQATLLRG 422
W E+V+ +L + M + + NL GA +G ++A A + +G
Sbjct: 393 WTAEEVDSKLHQVMTDIHDGSAAAAERYGLGYNLVAGANIVGFQKIADAMMAQG 446
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/413 (25%), Positives = 170/413 (41%), Gaps = 42/413 (10%)
Query: 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R I+ D+G FR+Q+++A GP KGG+R+HP V+ V L +K
Sbjct: 77 PERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFK 136
Query: 91 TAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTM 150
++ + GG KGG +P+ S +E+ + + F +++ IG DVPA D+G + +
Sbjct: 137 NSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREI 196
Query: 151 AWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEAL 210
++ +Y K +TGK + GGS R ATG G+ + +
Sbjct: 197 GYLYGQYKKIVNSFNGTLTGKNV--------------KWGGSNLRVEATGYGLVYFVLEV 242
Query: 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXX 270
L + + G GNV + + KV+ +SD G + PNG
Sbjct: 243 LKSLNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGF-------T 295
Query: 271 XXXXXXXXDFQGGNAMDLNDLLVHE---------------CDVLVPCALGGVLNKENAAD 315
D + + + L H C + PCA ++ + A
Sbjct: 296 HENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNEKPWGVPCTLAFPCATQNDVDLDQAKL 355
Query: 316 VKAKFII---EAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWE 372
++ I E AN P+ +A + ++ P AN+GGV +S E QN Q W
Sbjct: 356 LQKNGCILVGEGANMPSTVDAINLFKSNNIIYCPSKAANAGGVAISGLEMSQNFQFSHWT 415
Query: 373 EEKVNHELKRYMMSAFKDIKTMCQTHNCN---LRMGAFTLGVNRVAQATLLRG 422
E V+ +LK M + F + N L+ GA G +VA++ + +G
Sbjct: 416 RETVDEKLKEIMRNIFIACSENALKYTKNKYDLQAGANIAGFLKVAESYIEQG 468
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 128/305 (41%), Gaps = 52/305 (17%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
HD GP GG R Y E + ++ LA+ MT+K A A + GG K I NP+
Sbjct: 32 HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPK--- 88
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
+ + + R F + I L G R + A D+GT M I E G S
Sbjct: 89 TDKNDEMFRAFGRYIEGLNG--RYITAEDVGTTEADMDLINLETDYVTGTSAGA------ 140
Query: 174 VSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNV 231
G S T G+++ +A E S++ A+QG GNV
Sbjct: 141 ----------------GSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNV 184
Query: 232 GSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDL 291
++ HE G K++ ++DI N + D G A+ +N++
Sbjct: 185 AYALCEYLHEEGAKLI-ITDI-----NEEAVQ------------RAVDAFGATAVGINEI 226
Query: 292 LVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYA 350
E D+ PCALG ++N E +KAK I +AN+ + +++ + G+V PD
Sbjct: 227 YSQEADIFAPCALGAIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVI 286
Query: 351 NSGGV 355
NSGGV
Sbjct: 287 NSGGV 291
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 283 APDFVANAGG 292
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 282 APDFVANAGG 291
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 283 APDFVANAGG 292
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 283 APDFVANAGG 292
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 282 APDFVANAGG 291
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 137 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 181
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 182 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 222
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 223 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 282
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 283 APDFVANAGG 292
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 282 APDFVANAGG 291
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 136/310 (43%), Gaps = 52/310 (16%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGC- 107
F I+ D+ + GP GG R Y D + LA MT K AV+ +P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 108 NPR-ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPA 166
PR + S R+ R+ + I L G + PD+ TNS M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHG-KSISNMKFAI 225
V G+ S++R GG+ T +GVF A +A +A G S+ + +
Sbjct: 136 -VFGR---SLER-----------GGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLV 180
Query: 226 QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNA 285
QG G VG A E G +++ T + + + G A
Sbjct: 181 QGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GHTA 221
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVI 344
+ L D+L CDV PCA+GGV+ E A + + AAN+ D A +IL +G++
Sbjct: 222 VALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILY 281
Query: 345 LPDIYANSGG 354
PD AN+GG
Sbjct: 282 APDFVANAGG 291
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 120/305 (39%), Gaps = 52/305 (17%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELS 113
HD GP GG R Y+ E + ++ LA+ MT+K A A + GG K I +P
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPFADK 91
Query: 114 MSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPI 173
++ R F Q ++ R + A D+GT M I E G SPA
Sbjct: 92 NEDMFRALGRFIQGLN-----GRYITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 174 VSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNV 231
G S T GV+ +A E S+ + ++QG GNV
Sbjct: 140 ---------------FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV 184
Query: 232 GSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPAXXXXXXXXXXXXDFQGGNAMDLNDL 291
K + G K+V V+D+ +G +A+ N +
Sbjct: 185 AKALCKKLNTEGAKLV-VTDVN-----------------KAAVSAAVAEEGADAVAPNAI 226
Query: 292 LVHECDVLVPCALGGVLNKENAADVKAKFIIEAA-NHPTDPEADEILSKKGVVILPDIYA 350
CD+ PCALG VLN +KAK I +A N DP + L + G+V PD
Sbjct: 227 YGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVI 286
Query: 351 NSGGV 355
N+GGV
Sbjct: 287 NAGGV 291
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253
+MK AI GFG +G K E G +VA++D+T
Sbjct: 21 SMKLAINGFGRIGRNVFKIAFERGIDIVAINDLT 54
>pdb|1VC2|A Chain A, Crystal Structure Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Thermus Thermophilus Hb8
Length = 331
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253
MK I GFG +G + HE G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHERGVEVALINDLT 33
>pdb|3AYX|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYX|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An H2-Reduced Condition
pdb|3AYY|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYY|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In A Ferricyanide-Oxidized
Condition
pdb|3AYZ|A Chain A, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
pdb|3AYZ|C Chain C, Membrane-Bound Respiratory [nife] Hydrogenase From
Hydrogenovibrio Marinus In An Air-Oxidized Condition
Length = 596
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%)
Query: 189 LGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 248
LG ++GR A L + + +L + + ISN+K N W + EH V
Sbjct: 459 LGSTIGRTLARALESEYCGDMMLDDFNQLISNIKNGDSSTANTDKWDPSSWPEHAKGVGT 518
Query: 249 VSDITGAI 256
V+ GA+
Sbjct: 519 VAAPRGAL 526
>pdb|1CER|O Chain O, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|P Chain P, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|Q Chain Q, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|R Chain R, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|A Chain A, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|B Chain B, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|C Chain C, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
pdb|1CER|D Chain D, Determinants Of Enzyme Thermostability Observed In The
Molecular Structure Of Thermus Aquaticus
D-Glyceraldehyde- 3-Phosphate Dehydrogenase At 2.5
Angstroms Resolution
Length = 331
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253
MK I GFG +G + H G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|2G82|O Chain O, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|P Chain P, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|Q Chain Q, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|R Chain R, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|A Chain A, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|B Chain B, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|C Chain C, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
pdb|2G82|D Chain D, High Resolution Structures Of Thermus Aquaticus
Glyceraldehyde-3- Phosphate Dehydrogenase: Role Of 220's
Loop Motion In Catalysis
Length = 331
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253
MK I GFG +G + H G +V ++D+T
Sbjct: 1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLT 33
>pdb|2WYB|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq With A Covalently Bound Dodecanoic Acid
pdb|2WYC|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With 3-Oxo-Lauric Acid
pdb|2WYD|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq In Complex With Dodecanoic Acid
pdb|2WYE|B Chain B, The Quorum Quenching N-Acyl Homoserine Lactone Acylase
Pvdq Is An Ntn-Hydrolase With An Unusual
Substrate-Binding Pocket
pdb|3L91|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Bound To
Octanoate
pdb|3L94|B Chain B, Structure Of Pvdq Covalently Acylated With Myristate
pdb|3SRA|B Chain B, Structure Of Pseudomonas Aerugionsa Pvdq Covalently
Acylated With Myristic Acid From Pvdiq
pdb|3SRB|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Smer28
pdb|3SRC|B Chain B, Structure Of Pseudomonas Aeruginosa Pvdq Bound To Ns2028
Length = 546
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 142 DMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRET-EKQRNKNDLGGSLGREAATG 200
D NS AW+ + S G SP V KPI R + + K L E T
Sbjct: 263 DFVQNSNDSAWLTNPASPLQGFSPLVSQEKPIGPRARYALSRLQGKQPLEAKTLEEMVTA 322
Query: 201 LGVFFATEAL 210
VF A + L
Sbjct: 323 NHVFSADQVL 332
>pdb|3GNQ|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|E Chain E, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|F Chain F, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|G Chain G, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
pdb|3GNQ|H Chain H, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase, Type I From Burkholderia Pseudomallei
Length = 344
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 221 MKFAIQGFGNVGSWAAKFFHEHGGK----VVAVSDITGAIKN 258
++ AI G+G +G + F+E+G K +VA++D+ A N
Sbjct: 11 IRVAINGYGRIGRNTLRAFYENGKKHDLEIVAINDLGDAKTN 52
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN---HPTDPEADEILSKKGV 342
M + D LVHE DVL L ++ V+ + ++ N H DP+ I +K G+
Sbjct: 168 MAVVDTLVHEIDVL------HWLVNDDYESVQVIYPKKSKNALPHLKDPQIVVIETKGGI 221
Query: 343 VILPDIYAN 351
VI +IY N
Sbjct: 222 VINAEIYVN 230
>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis
pdb|3NTQ|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTQ|B Chain B, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTR|A Chain A, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
pdb|3NTR|B Chain B, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
Length = 344
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 286 MDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAAN---HPTDPEADEILSKKGV 342
M + D LVHE DVL L ++ V+ + ++ N H DP+ I +K G+
Sbjct: 168 MAVVDTLVHEIDVL------HWLVNDDYESVQVIYPKKSKNALPHLKDPQIVVIETKGGI 221
Query: 343 VILPDIYAN 351
VI +IY N
Sbjct: 222 VINAEIYVN 230
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 251
+K I GFG +G + E G +VVAV+D
Sbjct: 2 VKVGINGFGRIGRLVLRVCMEKGVRVVAVND 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,769,251
Number of Sequences: 62578
Number of extensions: 530703
Number of successful extensions: 1427
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 58
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)