Query 014463
Match_columns 424
No_of_seqs 254 out of 1739
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:22:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 1E-132 3E-137 1021.6 49.2 410 1-424 1-410 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 4E-130 8E-135 987.3 45.0 408 2-423 2-410 (411)
3 PRK14030 glutamate dehydrogena 100.0 1E-128 3E-133 996.2 47.6 408 2-423 19-444 (445)
4 PRK09414 glutamate dehydrogena 100.0 3E-125 7E-130 973.7 46.8 408 2-423 23-444 (445)
5 PRK14031 glutamate dehydrogena 100.0 4E-121 8E-126 941.2 46.0 407 3-423 20-443 (444)
6 PTZ00079 NADP-specific glutama 100.0 1E-120 3E-125 935.2 47.0 387 23-423 54-453 (454)
7 KOG2250 Glutamate/leucine/phen 100.0 6E-105 1E-109 808.3 33.5 387 23-423 66-483 (514)
8 PTZ00324 glutamate dehydrogena 100.0 1.3E-83 2.8E-88 703.9 39.8 365 18-411 459-911 (1002)
9 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 4.3E-73 9.2E-78 548.6 26.8 241 169-423 1-254 (254)
10 PF00208 ELFV_dehydrog: Glutam 100.0 1.1E-65 2.3E-70 496.6 20.1 233 190-422 1-244 (244)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 5.5E-62 1.2E-66 466.3 25.7 226 190-415 1-226 (227)
12 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 4.5E-61 9.8E-66 457.0 23.4 217 198-415 1-217 (217)
13 PF02812 ELFV_dehydrog_N: Glu/ 100.0 9.6E-48 2.1E-52 338.2 13.7 130 31-160 1-130 (131)
14 cd01075 NAD_bind_Leu_Phe_Val_D 100.0 5.2E-44 1.1E-48 336.1 22.7 194 197-415 3-199 (200)
15 smart00839 ELFV_dehydrog Gluta 100.0 6.5E-31 1.4E-35 222.3 9.6 100 296-398 3-102 (102)
16 COG2902 NAD-specific glutamate 100.0 2.9E-29 6.4E-34 278.0 22.3 338 19-393 760-1195(1592)
17 PF05088 Bac_GDH: Bacterial NA 100.0 3.6E-28 7.8E-33 278.9 26.6 368 19-422 698-1168(1528)
18 PRK08374 homoserine dehydrogen 99.3 3.1E-12 6.7E-17 129.6 7.4 171 221-400 3-205 (336)
19 PRK06392 homoserine dehydrogen 99.1 1.7E-10 3.8E-15 116.4 7.6 83 221-305 1-91 (326)
20 PRK06270 homoserine dehydrogen 98.8 3.3E-08 7.1E-13 100.6 11.3 177 221-400 3-209 (341)
21 cd05191 NAD_bind_amino_acid_DH 98.7 1.4E-07 3E-12 77.0 9.9 84 198-325 1-86 (86)
22 PLN02700 homoserine dehydrogen 98.2 3.8E-06 8.3E-11 86.4 8.5 61 220-280 3-79 (377)
23 PRK06813 homoserine dehydrogen 98.0 2.1E-05 4.5E-10 80.3 9.2 81 221-304 3-95 (346)
24 COG0460 ThrA Homoserine dehydr 98.0 3E-05 6.5E-10 78.4 9.2 78 219-306 2-89 (333)
25 PF00670 AdoHcyase_NAD: S-aden 97.8 0.00015 3.3E-09 66.4 9.7 120 199-343 5-127 (162)
26 cd01065 NAD_bind_Shikimate_DH 97.7 0.0009 1.9E-08 59.4 13.9 129 206-347 5-138 (155)
27 TIGR02853 spore_dpaA dipicolin 97.6 0.00048 1E-08 68.6 11.7 125 197-345 131-259 (287)
28 PRK09436 thrA bifunctional asp 97.5 0.00026 5.7E-09 79.9 8.6 60 213-272 458-526 (819)
29 PRK09599 6-phosphogluconate de 97.4 0.0026 5.6E-08 63.5 13.7 168 221-409 1-210 (301)
30 COG0373 HemA Glutamyl-tRNA red 97.4 0.0056 1.2E-07 64.0 15.8 166 202-401 160-336 (414)
31 PTZ00075 Adenosylhomocysteinas 97.3 0.001 2.2E-08 70.5 9.3 108 200-327 233-343 (476)
32 PRK08306 dipicolinate synthase 97.3 0.0021 4.6E-08 64.3 11.1 125 197-345 132-260 (296)
33 PRK09466 metL bifunctional asp 97.3 0.00064 1.4E-08 76.7 8.0 178 217-400 455-659 (810)
34 PRK05476 S-adenosyl-L-homocyst 97.3 0.0008 1.7E-08 70.6 8.0 98 196-316 191-289 (425)
35 PRK15438 erythronate-4-phospha 97.1 0.011 2.5E-07 61.2 15.0 131 198-352 94-237 (378)
36 PRK13529 malate dehydrogenase; 97.1 0.018 4E-07 62.1 16.5 183 112-327 218-419 (563)
37 PF03446 NAD_binding_2: NAD bi 97.0 0.0022 4.7E-08 58.3 7.7 110 221-349 2-120 (163)
38 cd05311 NAD_bind_2_malic_enz N 97.0 0.0065 1.4E-07 58.5 11.3 136 199-342 4-144 (226)
39 PRK12861 malic enzyme; Reviewe 97.0 0.014 3.1E-07 65.3 14.8 124 197-332 166-297 (764)
40 COG0281 SfcA Malic enzyme [Ene 97.0 0.0058 1.3E-07 63.5 10.8 124 197-333 176-306 (432)
41 PRK14175 bifunctional 5,10-met 96.9 0.0083 1.8E-07 59.9 11.4 94 196-328 138-233 (286)
42 PLN03129 NADP-dependent malic 96.9 0.023 4.9E-07 61.6 15.4 178 112-327 243-438 (581)
43 cd00401 AdoHcyase S-adenosyl-L 96.9 0.0031 6.7E-08 66.0 8.4 104 198-324 183-289 (413)
44 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.016 3.4E-07 53.5 12.0 96 194-328 22-119 (168)
45 PF01488 Shikimate_DH: Shikima 96.8 0.0033 7.2E-08 55.5 7.0 103 216-332 8-117 (135)
46 PF02826 2-Hacid_dh_C: D-isome 96.8 0.0065 1.4E-07 56.0 8.9 116 214-349 30-154 (178)
47 PRK13243 glyoxylate reductase; 96.7 0.016 3.6E-07 58.9 12.1 155 215-391 145-311 (333)
48 PLN02494 adenosylhomocysteinas 96.7 0.0078 1.7E-07 63.9 9.6 98 198-318 235-333 (477)
49 PRK08410 2-hydroxyacid dehydro 96.6 0.041 8.9E-07 55.5 13.7 111 216-350 141-259 (311)
50 PRK06932 glycerate dehydrogena 96.6 0.077 1.7E-06 53.6 15.3 108 217-349 144-260 (314)
51 cd05312 NAD_bind_1_malic_enz N 96.6 0.018 4E-07 57.2 10.5 123 198-327 3-142 (279)
52 COG0111 SerA Phosphoglycerate 96.5 0.032 7E-07 56.7 12.5 37 215-252 137-173 (324)
53 PRK14982 acyl-ACP reductase; P 96.5 0.05 1.1E-06 55.7 13.6 130 198-357 133-269 (340)
54 PRK07232 bifunctional malic en 96.5 0.018 3.9E-07 64.5 11.0 119 197-327 162-286 (752)
55 PRK13940 glutamyl-tRNA reducta 96.5 0.12 2.6E-06 54.3 16.5 101 216-333 177-282 (414)
56 PF03807 F420_oxidored: NADP o 96.4 0.0058 1.3E-07 50.0 5.2 86 222-326 1-95 (96)
57 PRK00676 hemA glutamyl-tRNA re 96.4 0.037 8E-07 56.5 12.0 101 204-328 159-264 (338)
58 TIGR00936 ahcY adenosylhomocys 96.4 0.0099 2.2E-07 62.1 8.0 96 198-316 176-272 (406)
59 PRK09310 aroDE bifunctional 3- 96.4 0.056 1.2E-06 57.7 13.5 153 198-389 314-471 (477)
60 PF03447 NAD_binding_3: Homose 96.3 0.0015 3.2E-08 55.8 1.2 89 227-356 1-95 (117)
61 cd00762 NAD_bind_malic_enz NAD 96.3 0.021 4.5E-07 56.0 9.1 121 198-327 3-143 (254)
62 PLN02928 oxidoreductase family 96.3 0.054 1.2E-06 55.5 12.5 124 216-349 155-289 (347)
63 TIGR01035 hemA glutamyl-tRNA r 96.3 0.21 4.6E-06 52.4 17.2 99 217-333 177-286 (417)
64 PRK00045 hemA glutamyl-tRNA re 96.3 0.14 3.1E-06 53.7 16.0 99 217-332 179-288 (423)
65 PTZ00142 6-phosphogluconate de 96.3 0.012 2.7E-07 62.6 7.9 172 221-409 2-218 (470)
66 PTZ00317 NADP-dependent malic 96.2 0.12 2.6E-06 55.9 15.2 181 113-327 221-418 (559)
67 PRK14176 bifunctional 5,10-met 96.2 0.025 5.4E-07 56.5 9.4 93 196-326 144-238 (287)
68 PRK07574 formate dehydrogenase 96.2 0.048 1E-06 56.7 11.8 157 216-392 188-357 (385)
69 PRK12862 malic enzyme; Reviewe 96.2 0.03 6.5E-07 63.0 10.9 119 197-327 170-294 (763)
70 PRK15409 bifunctional glyoxyla 96.2 0.054 1.2E-06 55.0 11.9 114 215-349 140-263 (323)
71 TIGR00872 gnd_rel 6-phosphoglu 96.2 0.02 4.3E-07 57.1 8.6 169 221-409 1-208 (298)
72 PLN03139 formate dehydrogenase 96.2 0.078 1.7E-06 55.2 13.0 108 216-343 195-311 (386)
73 PRK00257 erythronate-4-phospha 96.1 0.013 2.8E-07 60.9 6.8 54 198-252 94-147 (381)
74 COG0499 SAM1 S-adenosylhomocys 96.0 0.022 4.8E-07 58.2 8.0 103 197-322 189-292 (420)
75 TIGR00507 aroE shikimate 5-deh 96.0 0.18 3.9E-06 49.5 14.2 130 198-346 99-235 (270)
76 PRK13302 putative L-aspartate 96.0 0.025 5.5E-07 55.9 8.1 112 218-346 4-122 (271)
77 cd05213 NAD_bind_Glutamyl_tRNA 96.0 0.049 1.1E-06 54.8 10.3 83 207-307 166-250 (311)
78 TIGR01505 tartro_sem_red 2-hyd 96.0 0.23 5E-06 49.1 14.8 169 222-410 1-205 (291)
79 PF03949 Malic_M: Malic enzyme 96.0 0.02 4.4E-07 56.2 7.2 124 198-327 3-143 (255)
80 PRK00048 dihydrodipicolinate r 95.9 0.028 6.1E-07 55.0 8.0 109 221-350 2-119 (257)
81 COG0057 GapA Glyceraldehyde-3- 95.9 0.044 9.6E-07 55.5 9.4 32 221-252 2-35 (335)
82 PF01113 DapB_N: Dihydrodipico 95.9 0.0069 1.5E-07 52.7 3.2 105 221-339 1-111 (124)
83 PRK13304 L-aspartate dehydroge 95.8 0.022 4.9E-07 56.0 7.0 106 221-345 2-117 (265)
84 COG1023 Gnd Predicted 6-phosph 95.8 0.12 2.5E-06 50.6 11.4 169 221-409 1-209 (300)
85 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.16 3.4E-06 45.6 11.7 52 197-253 9-61 (140)
86 TIGR00873 gnd 6-phosphoglucona 95.7 0.025 5.4E-07 60.2 7.2 170 223-409 2-215 (467)
87 PRK13581 D-3-phosphoglycerate 95.6 0.13 2.8E-06 55.6 12.4 108 215-343 135-250 (526)
88 TIGR01532 E4PD_g-proteo D-eryt 95.6 0.11 2.4E-06 52.9 11.2 32 222-253 1-36 (325)
89 cd01078 NAD_bind_H4MPT_DH NADP 95.6 0.049 1.1E-06 50.6 7.9 123 198-332 6-137 (194)
90 PRK14192 bifunctional 5,10-met 95.6 0.079 1.7E-06 52.9 9.7 52 196-252 139-191 (283)
91 TIGR01327 PGDH D-3-phosphoglyc 95.5 0.26 5.5E-06 53.3 14.3 156 215-392 133-301 (525)
92 PF10727 Rossmann-like: Rossma 95.5 0.013 2.7E-07 51.7 3.5 72 220-308 10-81 (127)
93 PLN00203 glutamyl-tRNA reducta 95.5 0.48 1E-05 51.2 16.2 113 207-333 252-378 (519)
94 PRK11064 wecC UDP-N-acetyl-D-m 95.5 0.3 6.5E-06 51.2 14.1 32 221-253 4-35 (415)
95 COG5322 Predicted dehydrogenas 95.5 0.21 4.6E-06 49.5 11.9 135 197-349 144-283 (351)
96 PRK14194 bifunctional 5,10-met 95.4 0.05 1.1E-06 54.8 7.8 53 196-253 139-192 (301)
97 PRK12549 shikimate 5-dehydroge 95.4 0.24 5.1E-06 49.4 12.5 132 199-346 110-248 (284)
98 PRK10792 bifunctional 5,10-met 95.4 0.049 1.1E-06 54.4 7.5 91 196-325 139-231 (285)
99 PRK15461 NADH-dependent gamma- 95.4 0.07 1.5E-06 53.2 8.7 167 222-409 3-206 (296)
100 PF02882 THF_DHG_CYH_C: Tetrah 95.4 0.065 1.4E-06 49.1 7.7 54 195-253 15-69 (160)
101 PLN02350 phosphogluconate dehy 95.3 0.05 1.1E-06 58.3 7.8 173 221-408 7-223 (493)
102 PRK00258 aroE shikimate 5-dehy 95.3 0.38 8.3E-06 47.5 13.6 131 198-346 104-242 (278)
103 PRK14177 bifunctional 5,10-met 95.3 0.1 2.2E-06 52.2 9.3 94 195-326 138-233 (284)
104 PF00044 Gp_dh_N: Glyceraldehy 95.2 0.11 2.4E-06 47.1 8.7 33 221-253 1-34 (151)
105 PRK14189 bifunctional 5,10-met 95.2 0.061 1.3E-06 53.7 7.5 52 196-252 138-190 (285)
106 PRK14172 bifunctional 5,10-met 95.2 0.11 2.4E-06 51.7 9.2 83 196-315 138-222 (278)
107 PRK12490 6-phosphogluconate de 95.0 0.087 1.9E-06 52.5 8.2 170 221-409 1-209 (299)
108 PRK06349 homoserine dehydrogen 94.9 0.069 1.5E-06 56.2 7.5 159 220-400 3-188 (426)
109 PRK06487 glycerate dehydrogena 94.9 0.064 1.4E-06 54.2 7.0 107 217-349 145-260 (317)
110 PRK14166 bifunctional 5,10-met 94.9 0.12 2.5E-06 51.7 8.6 91 196-324 137-229 (282)
111 PRK14169 bifunctional 5,10-met 94.9 0.15 3.2E-06 50.9 9.2 94 195-326 135-230 (282)
112 TIGR01546 GAPDH-II_archae glyc 94.9 0.058 1.3E-06 55.0 6.5 91 223-325 1-107 (333)
113 PLN02272 glyceraldehyde-3-phos 94.9 0.36 7.7E-06 50.8 12.4 32 221-252 86-118 (421)
114 PRK14191 bifunctional 5,10-met 94.9 0.1 2.2E-06 52.2 8.0 52 196-252 137-189 (285)
115 PRK13535 erythrose 4-phosphate 94.9 0.33 7.2E-06 49.6 11.9 32 221-252 2-37 (336)
116 COG1052 LdhA Lactate dehydroge 94.8 0.43 9.4E-06 48.5 12.7 108 215-343 141-256 (324)
117 PRK09424 pntA NAD(P) transhydr 94.8 0.11 2.5E-06 55.8 8.8 35 218-253 163-197 (509)
118 PRK14187 bifunctional 5,10-met 94.8 0.13 2.7E-06 51.7 8.5 83 196-315 140-224 (294)
119 PRK08328 hypothetical protein; 94.8 0.025 5.5E-07 54.6 3.4 119 218-345 25-147 (231)
120 PRK14188 bifunctional 5,10-met 94.7 0.11 2.4E-06 52.2 8.0 52 196-252 138-190 (296)
121 PRK06476 pyrroline-5-carboxyla 94.7 0.4 8.6E-06 46.6 11.5 171 221-410 1-194 (258)
122 PRK14186 bifunctional 5,10-met 94.6 0.19 4.1E-06 50.6 9.3 93 196-326 138-232 (297)
123 PRK08223 hypothetical protein; 94.6 0.028 6E-07 56.2 3.4 36 218-253 25-60 (287)
124 PLN02516 methylenetetrahydrofo 94.6 0.2 4.2E-06 50.5 9.4 54 195-253 146-200 (299)
125 PRK14179 bifunctional 5,10-met 94.6 0.1 2.2E-06 52.1 7.4 52 196-252 138-190 (284)
126 PRK15425 gapA glyceraldehyde-3 94.6 0.45 9.8E-06 48.6 12.2 32 221-252 3-35 (331)
127 COG0677 WecC UDP-N-acetyl-D-ma 94.6 0.26 5.5E-06 51.3 10.3 118 221-348 10-155 (436)
128 PRK14173 bifunctional 5,10-met 94.6 0.19 4E-06 50.3 9.2 53 196-253 135-188 (287)
129 TIGR01534 GAPDH-I glyceraldehy 94.6 0.42 9.1E-06 48.7 11.9 31 222-252 1-34 (327)
130 COG1748 LYS9 Saccharopine dehy 94.6 0.099 2.2E-06 54.4 7.4 126 221-363 2-137 (389)
131 TIGR02356 adenyl_thiF thiazole 94.6 0.099 2.1E-06 49.3 6.8 37 217-253 18-54 (202)
132 TIGR01809 Shik-DH-AROM shikima 94.5 0.57 1.2E-05 46.5 12.4 130 199-345 106-251 (282)
133 PLN02358 glyceraldehyde-3-phos 94.5 0.45 9.7E-06 48.7 11.8 34 221-254 6-40 (338)
134 PF03721 UDPG_MGDP_dh_N: UDP-g 94.5 0.12 2.5E-06 48.3 7.0 120 221-350 1-155 (185)
135 PRK05690 molybdopterin biosynt 94.4 0.11 2.4E-06 50.5 7.1 36 218-253 30-65 (245)
136 PRK11559 garR tartronate semia 94.4 0.21 4.7E-06 49.3 9.1 106 221-346 3-119 (296)
137 PRK07680 late competence prote 94.3 0.11 2.5E-06 50.8 7.0 111 221-348 1-119 (273)
138 PLN02520 bifunctional 3-dehydr 94.3 0.63 1.4E-05 50.4 13.2 130 198-345 351-495 (529)
139 PRK15057 UDP-glucose 6-dehydro 94.3 0.8 1.7E-05 47.7 13.4 121 221-354 1-148 (388)
140 PLN02616 tetrahydrofolate dehy 94.3 0.23 5.1E-06 51.1 9.1 85 194-315 209-295 (364)
141 PRK06141 ornithine cyclodeamin 94.2 0.76 1.6E-05 46.3 12.8 139 190-347 100-242 (314)
142 PRK14180 bifunctional 5,10-met 94.2 0.23 4.9E-06 49.6 8.8 93 196-326 138-232 (282)
143 PRK14170 bifunctional 5,10-met 94.2 0.21 4.6E-06 49.9 8.5 93 196-326 137-231 (284)
144 PRK13301 putative L-aspartate 94.2 0.11 2.4E-06 51.4 6.4 85 221-324 3-93 (267)
145 TIGR02355 moeB molybdopterin s 94.2 0.12 2.7E-06 50.2 6.7 36 218-253 22-57 (240)
146 TIGR00518 alaDH alanine dehydr 94.1 0.2 4.4E-06 51.7 8.5 35 218-253 165-199 (370)
147 PRK12475 thiamine/molybdopteri 94.1 0.12 2.6E-06 52.8 6.7 36 218-253 22-57 (338)
148 PRK06436 glycerate dehydrogena 94.1 0.082 1.8E-06 53.2 5.4 103 216-342 118-228 (303)
149 smart00846 Gp_dh_N Glyceraldeh 94.0 1.1 2.4E-05 40.4 12.1 32 221-252 1-33 (149)
150 PRK03659 glutathione-regulated 94.0 0.55 1.2E-05 51.6 12.1 137 221-383 401-548 (601)
151 PRK05225 ketol-acid reductoiso 93.9 0.8 1.7E-05 48.7 12.5 30 218-247 34-63 (487)
152 PRK12491 pyrroline-5-carboxyla 93.9 1.7 3.6E-05 43.0 14.3 173 221-412 3-207 (272)
153 COG0345 ProC Pyrroline-5-carbo 93.9 1.3 2.7E-05 44.0 13.3 115 221-354 2-125 (266)
154 cd01079 NAD_bind_m-THF_DH NAD 93.9 0.18 3.8E-06 47.8 7.0 139 196-359 33-183 (197)
155 PRK14171 bifunctional 5,10-met 93.9 0.26 5.7E-06 49.3 8.4 83 196-315 139-223 (288)
156 PRK15469 ghrA bifunctional gly 93.8 0.1 2.2E-06 52.7 5.6 107 216-343 132-246 (312)
157 PF13241 NAD_binding_7: Putati 93.8 0.085 1.9E-06 44.3 4.2 37 216-252 3-39 (103)
158 COG2084 MmsB 3-hydroxyisobutyr 93.8 0.24 5.2E-06 49.6 8.1 108 221-346 1-118 (286)
159 PLN03096 glyceraldehyde-3-phos 93.8 0.66 1.4E-05 48.5 11.5 32 221-252 61-95 (395)
160 PRK14182 bifunctional 5,10-met 93.8 0.29 6.3E-06 48.9 8.5 83 196-315 137-221 (282)
161 PRK07679 pyrroline-5-carboxyla 93.7 1.9 4.2E-05 42.4 14.4 100 219-337 2-111 (279)
162 PRK14167 bifunctional 5,10-met 93.7 0.34 7.4E-06 48.7 9.0 93 196-326 137-235 (297)
163 PRK12480 D-lactate dehydrogena 93.7 0.11 2.4E-06 52.9 5.5 105 216-343 142-254 (330)
164 cd00757 ThiF_MoeB_HesA_family 93.6 0.2 4.4E-06 48.0 7.1 36 218-253 19-54 (228)
165 PTZ00023 glyceraldehyde-3-phos 93.6 0.67 1.4E-05 47.5 11.1 32 221-252 3-35 (337)
166 TIGR01692 HIBADH 3-hydroxyisob 93.6 1.6 3.5E-05 43.1 13.7 165 225-410 1-202 (288)
167 PRK11790 D-3-phosphoglycerate 93.6 0.11 2.3E-06 54.5 5.5 104 216-343 147-259 (409)
168 cd00755 YgdL_like Family of ac 93.6 0.042 9.2E-07 53.2 2.2 36 218-253 9-44 (231)
169 PRK14618 NAD(P)H-dependent gly 93.6 0.45 9.6E-06 47.9 9.7 111 220-343 4-130 (328)
170 TIGR00561 pntA NAD(P) transhyd 93.5 0.49 1.1E-05 51.0 10.2 35 218-253 162-196 (511)
171 PRK07729 glyceraldehyde-3-phos 93.4 0.95 2.1E-05 46.5 11.8 32 221-252 3-35 (343)
172 PF07991 IlvN: Acetohydroxy ac 93.4 0.12 2.6E-06 47.6 4.7 37 218-255 2-38 (165)
173 PRK07403 glyceraldehyde-3-phos 93.4 0.86 1.9E-05 46.7 11.4 32 221-252 2-36 (337)
174 PRK14183 bifunctional 5,10-met 93.3 0.28 6.1E-06 48.9 7.6 53 196-253 137-190 (281)
175 PLN02897 tetrahydrofolate dehy 93.3 0.44 9.6E-06 48.8 9.1 95 194-326 192-288 (345)
176 TIGR00036 dapB dihydrodipicoli 93.3 0.33 7.1E-06 47.9 8.1 98 221-332 2-105 (266)
177 PRK06153 hypothetical protein; 93.3 0.061 1.3E-06 55.9 3.0 36 218-253 174-209 (393)
178 PRK15059 tartronate semialdehy 93.2 0.41 8.9E-06 47.7 8.7 165 222-409 2-204 (292)
179 PRK14852 hypothetical protein; 93.2 0.27 5.8E-06 56.6 8.0 121 217-347 329-455 (989)
180 PRK07688 thiamine/molybdopteri 93.2 0.19 4E-06 51.4 6.2 36 218-253 22-57 (339)
181 COG2085 Predicted dinucleotide 93.1 0.3 6.5E-06 46.7 7.1 90 221-327 2-95 (211)
182 PRK14178 bifunctional 5,10-met 93.1 0.29 6.2E-06 48.8 7.2 53 196-253 132-185 (279)
183 PRK14851 hypothetical protein; 93.0 0.31 6.7E-06 54.4 8.2 120 218-346 41-165 (679)
184 PLN02306 hydroxypyruvate reduc 93.0 0.14 3.1E-06 53.2 5.2 125 215-350 160-300 (386)
185 PRK14185 bifunctional 5,10-met 93.0 0.54 1.2E-05 47.2 9.1 83 196-315 137-225 (293)
186 KOG1370 S-adenosylhomocysteine 92.9 0.23 4.9E-06 50.1 6.2 79 218-316 212-291 (434)
187 COG1712 Predicted dinucleotide 92.8 0.22 4.8E-06 48.2 5.8 74 221-311 1-76 (255)
188 PRK07340 ornithine cyclodeamin 92.8 0.77 1.7E-05 46.1 10.0 109 218-341 123-234 (304)
189 PRK13403 ketol-acid reductoiso 92.6 0.18 4E-06 51.3 5.2 32 218-249 14-45 (335)
190 PRK04207 glyceraldehyde-3-phos 92.5 0.49 1.1E-05 48.4 8.3 33 221-253 2-35 (341)
191 PF02737 3HCDH_N: 3-hydroxyacy 92.5 0.098 2.1E-06 48.5 2.9 31 222-253 1-31 (180)
192 COG0569 TrkA K+ transport syst 92.5 0.29 6.3E-06 47.0 6.2 114 221-349 1-123 (225)
193 PRK06719 precorrin-2 dehydroge 92.4 0.18 4E-06 45.8 4.6 34 216-249 9-42 (157)
194 PTZ00353 glycosomal glyceralde 92.4 1.5 3.2E-05 45.1 11.5 32 221-252 3-35 (342)
195 PRK07877 hypothetical protein; 92.4 0.29 6.3E-06 54.9 6.9 125 218-356 105-234 (722)
196 PF01262 AlaDh_PNT_C: Alanine 92.3 0.19 4.2E-06 45.8 4.6 34 218-252 18-51 (168)
197 PRK14190 bifunctional 5,10-met 92.3 0.37 8.1E-06 48.1 6.9 52 196-252 138-190 (284)
198 PRK05479 ketol-acid reductoiso 92.1 0.21 4.6E-06 50.9 5.0 34 218-252 15-48 (330)
199 PLN02688 pyrroline-5-carboxyla 92.0 0.65 1.4E-05 45.0 8.2 31 221-252 1-36 (266)
200 KOG2018 Predicted dinucleotide 92.0 0.42 9.1E-06 48.3 6.8 35 218-252 72-106 (430)
201 PRK13303 L-aspartate dehydroge 91.9 0.48 1E-05 46.6 7.2 107 221-345 2-117 (265)
202 PRK12749 quinate/shikimate deh 91.9 4.7 0.0001 40.3 14.3 134 200-346 108-254 (288)
203 COG0169 AroE Shikimate 5-dehyd 91.9 4.3 9.2E-05 40.6 13.9 130 200-344 108-245 (283)
204 COG2130 Putative NADP-dependen 91.9 0.46 9.9E-06 47.9 6.9 108 198-325 133-250 (340)
205 PRK05597 molybdopterin biosynt 91.8 0.44 9.6E-06 48.9 7.0 36 218-253 26-61 (355)
206 PRK06718 precorrin-2 dehydroge 91.7 0.27 5.8E-06 46.6 4.9 35 216-250 6-40 (202)
207 COG1064 AdhP Zn-dependent alco 91.7 0.46 9.9E-06 48.7 6.8 41 211-252 159-199 (339)
208 TIGR03026 NDP-sugDHase nucleot 91.6 5.3 0.00012 41.6 14.9 32 221-253 1-32 (411)
209 PRK08229 2-dehydropantoate 2-r 91.6 2.9 6.2E-05 42.0 12.5 31 221-252 3-33 (341)
210 PRK05600 thiamine biosynthesis 91.5 0.45 9.7E-06 49.3 6.7 36 218-253 39-74 (370)
211 PRK08955 glyceraldehyde-3-phos 91.5 2.9 6.3E-05 42.8 12.4 32 221-252 3-35 (334)
212 PLN02237 glyceraldehyde-3-phos 91.5 1.8 4E-05 45.8 11.2 32 221-252 76-110 (442)
213 KOG2380 Prephenate dehydrogena 91.3 0.33 7.1E-06 49.6 5.3 34 219-253 51-84 (480)
214 COG1648 CysG Siroheme synthase 91.3 0.55 1.2E-05 44.9 6.6 49 216-274 8-56 (210)
215 PRK08289 glyceraldehyde-3-phos 91.3 3.4 7.3E-05 44.1 12.9 37 218-254 125-166 (477)
216 TIGR01470 cysG_Nterm siroheme 91.3 0.28 6.1E-06 46.5 4.6 35 216-250 5-39 (205)
217 TIGR00465 ilvC ketol-acid redu 91.2 0.35 7.7E-06 48.9 5.5 35 218-252 1-35 (314)
218 PRK06046 alanine dehydrogenase 91.2 1.3 2.8E-05 44.9 9.6 115 219-348 128-246 (326)
219 PRK08300 acetaldehyde dehydrog 91.2 0.71 1.5E-05 46.6 7.6 115 219-349 3-133 (302)
220 PLN02819 lysine-ketoglutarate 91.1 0.44 9.4E-06 55.5 6.7 114 219-349 568-704 (1042)
221 PRK14193 bifunctional 5,10-met 91.1 0.77 1.7E-05 45.9 7.6 53 196-253 138-193 (284)
222 PRK06567 putative bifunctional 90.9 0.76 1.7E-05 53.1 8.3 34 218-252 381-414 (1028)
223 PRK03562 glutathione-regulated 90.9 1.2 2.6E-05 49.2 9.6 111 220-349 400-520 (621)
224 PRK08762 molybdopterin biosynt 90.8 0.53 1.2E-05 48.6 6.4 36 218-253 133-168 (376)
225 PF02254 TrkA_N: TrkA-N domain 90.7 0.89 1.9E-05 38.1 6.7 102 223-343 1-111 (116)
226 KOG0069 Glyoxylate/hydroxypyru 90.7 0.78 1.7E-05 46.9 7.4 100 215-334 157-263 (336)
227 PRK08605 D-lactate dehydrogena 90.7 0.34 7.3E-06 49.3 4.8 106 215-343 141-256 (332)
228 PF01118 Semialdhyde_dh: Semia 90.6 0.36 7.9E-06 41.5 4.3 32 222-253 1-34 (121)
229 COG2344 AT-rich DNA-binding pr 90.5 0.53 1.1E-05 44.4 5.4 55 199-254 64-120 (211)
230 COG0059 IlvC Ketol-acid reduct 90.1 0.3 6.5E-06 49.2 3.7 55 218-273 16-74 (338)
231 PRK10669 putative cation:proto 90.1 0.82 1.8E-05 49.6 7.4 104 221-343 418-530 (558)
232 PRK07878 molybdopterin biosynt 90.1 0.84 1.8E-05 47.5 7.2 36 218-253 40-75 (392)
233 PRK06928 pyrroline-5-carboxyla 90.0 5.2 0.00011 39.5 12.5 113 221-351 2-125 (277)
234 PRK07417 arogenate dehydrogena 90.0 1.1 2.3E-05 44.2 7.6 69 221-307 1-69 (279)
235 TIGR01915 npdG NADPH-dependent 89.9 0.8 1.7E-05 43.4 6.4 97 221-329 1-105 (219)
236 PRK14184 bifunctional 5,10-met 89.8 1 2.2E-05 45.2 7.2 53 196-253 137-194 (286)
237 PRK08618 ornithine cyclodeamin 89.7 3.9 8.4E-05 41.4 11.6 115 219-348 126-245 (325)
238 PF00070 Pyr_redox: Pyridine n 89.6 1.5 3.2E-05 34.6 6.8 42 222-266 1-42 (80)
239 PRK05472 redox-sensing transcr 89.4 0.75 1.6E-05 43.6 5.7 53 200-253 65-119 (213)
240 PRK07530 3-hydroxybutyryl-CoA 89.3 1.5 3.3E-05 43.3 8.1 32 221-253 5-36 (292)
241 KOG0068 D-3-phosphoglycerate d 89.2 0.33 7.3E-06 49.5 3.3 35 214-248 140-174 (406)
242 PRK01438 murD UDP-N-acetylmura 89.0 0.7 1.5E-05 48.9 5.8 41 212-253 8-48 (480)
243 PF01210 NAD_Gly3P_dh_N: NAD-d 89.0 1.6 3.5E-05 39.3 7.4 70 222-303 1-77 (157)
244 PRK14181 bifunctional 5,10-met 89.0 1.2 2.6E-05 44.7 7.0 83 196-315 133-221 (287)
245 TIGR01921 DAP-DH diaminopimela 88.9 0.71 1.5E-05 47.0 5.5 34 220-253 3-37 (324)
246 PRK14174 bifunctional 5,10-met 88.8 1.2 2.5E-05 44.9 6.8 53 196-253 139-196 (295)
247 PRK08268 3-hydroxy-acyl-CoA de 88.8 0.5 1.1E-05 50.9 4.6 32 221-253 8-39 (507)
248 PRK15182 Vi polysaccharide bio 88.8 20 0.00042 37.9 16.3 33 219-253 5-37 (425)
249 PLN02545 3-hydroxybutyryl-CoA 88.6 0.49 1.1E-05 46.8 4.1 32 221-253 5-36 (295)
250 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.5 0.47 1E-05 51.1 4.1 32 221-253 6-37 (503)
251 PF00899 ThiF: ThiF family; I 88.4 0.48 1E-05 41.4 3.5 34 220-253 2-35 (135)
252 cd01487 E1_ThiF_like E1_ThiF_l 88.3 1.1 2.5E-05 41.2 6.0 32 222-253 1-32 (174)
253 PRK02472 murD UDP-N-acetylmura 88.1 0.85 1.8E-05 47.7 5.7 36 217-253 2-37 (447)
254 PRK12550 shikimate 5-dehydroge 88.1 12 0.00026 37.1 13.5 124 199-346 106-237 (272)
255 TIGR02354 thiF_fam2 thiamine b 88.1 0.76 1.7E-05 43.4 4.8 36 218-253 19-54 (200)
256 PLN02712 arogenate dehydrogena 88.1 0.89 1.9E-05 50.7 6.0 38 214-252 363-400 (667)
257 PRK04690 murD UDP-N-acetylmura 88.0 0.73 1.6E-05 49.0 5.1 35 218-253 6-40 (468)
258 PRK09496 trkA potassium transp 88.0 2.1 4.6E-05 44.6 8.6 121 207-343 217-345 (453)
259 PRK12548 shikimate 5-dehydroge 87.9 1.6 3.4E-05 43.5 7.1 50 200-253 110-159 (289)
260 PLN02858 fructose-bisphosphate 87.9 1.9 4.1E-05 52.0 8.9 172 219-410 3-213 (1378)
261 KOG0409 Predicted dehydrogenas 87.8 1.2 2.6E-05 44.9 6.1 66 218-302 33-98 (327)
262 PRK15116 sulfur acceptor prote 87.8 0.74 1.6E-05 45.7 4.7 36 218-253 28-63 (268)
263 COG0190 FolD 5,10-methylene-te 87.8 1.3 2.9E-05 44.2 6.4 53 196-253 136-189 (283)
264 PRK09260 3-hydroxybutyryl-CoA 87.8 0.61 1.3E-05 46.1 4.1 32 221-253 2-33 (288)
265 PRK11579 putative oxidoreducta 87.6 3.5 7.5E-05 41.8 9.6 102 221-345 5-119 (346)
266 PRK00094 gpsA NAD(P)H-dependen 87.6 1.9 4.2E-05 42.8 7.6 32 221-253 2-33 (325)
267 COG0686 Ald Alanine dehydrogen 87.5 3.1 6.6E-05 42.4 8.7 65 197-272 135-209 (371)
268 PRK14168 bifunctional 5,10-met 87.4 1.5 3.3E-05 44.1 6.7 53 196-253 141-198 (297)
269 KOG0455 Homoserine dehydrogena 87.2 1.4 3E-05 43.5 6.0 57 219-275 2-71 (364)
270 KOG1257 NADP+-dependent malic 87.2 7.9 0.00017 41.8 12.0 176 113-329 233-427 (582)
271 PRK08293 3-hydroxybutyryl-CoA 87.1 0.79 1.7E-05 45.3 4.5 31 221-252 4-34 (287)
272 PLN02858 fructose-bisphosphate 87.1 2.1 4.6E-05 51.5 8.7 169 220-408 324-531 (1378)
273 PRK05717 oxidoreductase; Valid 87.0 1.2 2.6E-05 42.4 5.6 36 216-252 6-42 (255)
274 PRK11880 pyrroline-5-carboxyla 87.0 2 4.4E-05 41.6 7.2 31 221-252 3-36 (267)
275 PLN02712 arogenate dehydrogena 87.0 1.5 3.2E-05 49.0 6.9 32 218-249 50-81 (667)
276 PF03435 Saccharop_dh: Sacchar 86.9 0.61 1.3E-05 47.9 3.7 112 223-353 1-127 (386)
277 PRK00066 ldh L-lactate dehydro 86.9 1.6 3.6E-05 44.0 6.7 34 219-253 5-40 (315)
278 PRK07819 3-hydroxybutyryl-CoA 86.9 0.64 1.4E-05 46.2 3.7 32 221-253 6-37 (286)
279 PF13380 CoA_binding_2: CoA bi 86.7 2.8 6E-05 36.1 7.1 100 221-347 1-109 (116)
280 TIGR03628 arch_S11P archaeal r 86.6 2.9 6.2E-05 36.3 7.0 67 192-258 37-112 (114)
281 PRK14106 murD UDP-N-acetylmura 86.4 1.1 2.5E-05 46.7 5.5 36 217-253 2-37 (450)
282 PRK14620 NAD(P)H-dependent gly 86.4 2.2 4.7E-05 42.8 7.3 31 221-252 1-31 (326)
283 PRK00436 argC N-acetyl-gamma-g 86.4 2 4.3E-05 43.9 7.1 96 221-328 3-102 (343)
284 KOG0022 Alcohol dehydrogenase, 86.4 0.8 1.7E-05 46.5 4.0 47 196-249 176-223 (375)
285 KOG0089 Methylenetetrahydrofol 86.3 0.75 1.6E-05 45.6 3.7 55 197-255 147-202 (309)
286 PTZ00434 cytosolic glyceraldeh 86.2 3.1 6.8E-05 43.0 8.3 32 221-252 4-40 (361)
287 PTZ00082 L-lactate dehydrogena 85.9 0.88 1.9E-05 46.1 4.2 37 218-255 4-41 (321)
288 KOG1196 Predicted NAD-dependen 85.8 2.9 6.3E-05 42.2 7.6 121 190-328 131-257 (343)
289 PRK14619 NAD(P)H-dependent gly 85.7 1.3 2.8E-05 44.3 5.1 34 219-253 3-36 (308)
290 COG1179 Dinucleotide-utilizing 85.5 0.9 1.9E-05 44.5 3.7 36 218-253 28-63 (263)
291 PRK09496 trkA potassium transp 85.5 2.1 4.5E-05 44.7 6.8 31 221-252 1-31 (453)
292 PRK09607 rps11p 30S ribosomal 85.4 3.6 7.8E-05 36.6 7.2 66 193-258 45-119 (132)
293 PRK07066 3-hydroxybutyryl-CoA 85.4 0.87 1.9E-05 46.3 3.8 32 221-253 8-39 (321)
294 PLN02256 arogenate dehydrogena 85.3 1.6 3.5E-05 43.9 5.7 33 218-250 34-66 (304)
295 PRK14027 quinate/shikimate deh 85.1 2.6 5.7E-05 42.0 7.0 130 199-345 110-249 (283)
296 PRK04148 hypothetical protein; 85.0 2 4.3E-05 38.3 5.4 34 218-253 15-48 (134)
297 PTZ00431 pyrroline carboxylate 85.0 14 0.0003 36.0 11.9 105 219-349 2-116 (260)
298 PRK01710 murD UDP-N-acetylmura 84.9 1.4 3E-05 46.6 5.2 35 218-253 12-46 (458)
299 PLN02353 probable UDP-glucose 84.8 5 0.00011 43.0 9.4 32 221-253 2-35 (473)
300 PRK08507 prephenate dehydrogen 84.6 2.9 6.4E-05 40.9 7.1 31 221-252 1-33 (275)
301 PRK08644 thiamine biosynthesis 84.4 1.4 2.9E-05 42.1 4.4 36 218-253 26-61 (212)
302 cd08239 THR_DH_like L-threonin 84.4 6.8 0.00015 38.9 9.7 32 218-249 162-194 (339)
303 cd01492 Aos1_SUMO Ubiquitin ac 84.3 1.2 2.5E-05 42.0 3.9 36 218-253 19-54 (197)
304 PRK07523 gluconate 5-dehydroge 84.1 1.9 4.2E-05 40.9 5.4 35 217-252 7-42 (255)
305 PRK08628 short chain dehydroge 83.6 1.8 4E-05 41.0 5.1 35 215-249 2-37 (258)
306 COG1004 Ugd Predicted UDP-gluc 83.6 7 0.00015 40.9 9.5 121 221-353 1-156 (414)
307 COG0673 MviM Predicted dehydro 83.5 7 0.00015 38.8 9.4 90 219-324 2-98 (342)
308 COG1250 FadB 3-hydroxyacyl-CoA 83.5 1.3 2.8E-05 44.8 4.1 33 220-253 3-35 (307)
309 cd01485 E1-1_like Ubiquitin ac 83.5 1.5 3.2E-05 41.3 4.2 36 218-253 17-52 (198)
310 PRK03369 murD UDP-N-acetylmura 83.4 1.8 3.9E-05 46.2 5.4 35 218-253 10-44 (488)
311 PF01408 GFO_IDH_MocA: Oxidore 83.3 2 4.4E-05 36.0 4.7 67 221-303 1-70 (120)
312 PRK12828 short chain dehydroge 83.3 2.1 4.4E-05 39.7 5.1 35 217-252 4-39 (239)
313 TIGR01832 kduD 2-deoxy-D-gluco 83.2 2.1 4.7E-05 40.2 5.3 34 217-250 2-36 (248)
314 TIGR02371 ala_DH_arch alanine 83.2 10 0.00022 38.4 10.5 115 219-349 127-246 (325)
315 cd01491 Ube1_repeat1 Ubiquitin 83.1 3.3 7.2E-05 41.5 6.8 36 218-253 17-52 (286)
316 PRK00141 murD UDP-N-acetylmura 83.1 1.9 4.1E-05 45.9 5.3 35 218-253 13-47 (473)
317 PTZ00117 malate dehydrogenase; 83.0 1.5 3.2E-05 44.4 4.3 35 218-253 3-38 (319)
318 PRK02006 murD UDP-N-acetylmura 83.0 1.9 4.1E-05 46.0 5.3 36 218-254 5-40 (498)
319 TIGR03215 ac_ald_DH_ac acetald 82.8 2.5 5.3E-05 42.4 5.7 33 221-253 2-35 (285)
320 PRK07060 short chain dehydroge 82.8 2.4 5.3E-05 39.6 5.5 36 216-252 5-41 (245)
321 PRK09291 short chain dehydroge 82.6 1.9 4.2E-05 40.7 4.7 31 220-250 2-33 (257)
322 cd08230 glucose_DH Glucose deh 82.5 4 8.7E-05 41.1 7.3 33 218-250 171-203 (355)
323 PRK12826 3-ketoacyl-(acyl-carr 82.5 2.3 5E-05 39.8 5.2 33 218-250 4-37 (251)
324 PRK04308 murD UDP-N-acetylmura 82.3 2.3 5E-05 44.6 5.6 35 218-253 3-37 (445)
325 PRK01390 murD UDP-N-acetylmura 82.3 2.1 4.5E-05 45.1 5.3 35 218-253 7-41 (460)
326 cd05291 HicDH_like L-2-hydroxy 82.2 2.4 5.2E-05 42.4 5.5 33 221-254 1-35 (306)
327 PLN02896 cinnamyl-alcohol dehy 82.2 2.6 5.6E-05 42.5 5.7 37 215-251 5-42 (353)
328 cd01483 E1_enzyme_family Super 82.2 2.2 4.7E-05 37.5 4.6 32 222-253 1-32 (143)
329 PRK06849 hypothetical protein; 82.2 2 4.4E-05 44.2 5.0 34 219-253 3-37 (389)
330 PRK06138 short chain dehydroge 82.1 2.4 5.2E-05 39.8 5.2 34 217-250 2-36 (252)
331 TIGR01202 bchC 2-desacetyl-2-h 82.1 2.1 4.7E-05 42.4 5.0 35 218-252 143-177 (308)
332 PF02558 ApbA: Ketopantoate re 82.0 2.7 5.9E-05 36.8 5.1 30 223-252 1-30 (151)
333 PRK05309 30S ribosomal protein 81.6 5.8 0.00013 35.1 7.0 65 194-258 53-118 (128)
334 PRK12742 oxidoreductase; Provi 81.5 7.5 0.00016 36.2 8.3 33 217-249 3-36 (237)
335 PLN02206 UDP-glucuronate decar 81.5 2.4 5.2E-05 44.8 5.3 37 214-250 113-150 (442)
336 PLN02586 probable cinnamyl alc 81.4 4.7 0.0001 41.0 7.4 35 218-252 182-216 (360)
337 PRK05557 fabG 3-ketoacyl-(acyl 81.3 3.3 7.2E-05 38.5 5.8 36 217-252 2-38 (248)
338 smart00859 Semialdhyde_dh Semi 81.2 4 8.6E-05 34.8 5.7 32 222-253 1-34 (122)
339 KOG2336 Molybdopterin biosynth 81.1 1.8 3.8E-05 43.3 3.8 43 210-253 67-115 (422)
340 CHL00041 rps11 ribosomal prote 81.1 6.4 0.00014 34.2 6.9 65 194-258 49-114 (116)
341 TIGR03632 bact_S11 30S ribosom 81.0 6.3 0.00014 33.7 6.8 65 194-258 36-101 (108)
342 PRK06522 2-dehydropantoate 2-r 80.9 2.5 5.3E-05 41.5 4.9 31 221-252 1-31 (304)
343 PRK06523 short chain dehydroge 80.8 3 6.5E-05 39.6 5.4 36 216-252 5-41 (260)
344 PRK06841 short chain dehydroge 80.8 3 6.6E-05 39.4 5.4 35 217-252 12-47 (255)
345 PRK12938 acetyacetyl-CoA reduc 80.7 3.1 6.8E-05 39.1 5.4 35 218-252 1-36 (246)
346 PRK07231 fabG 3-ketoacyl-(acyl 80.7 3.1 6.8E-05 39.0 5.4 36 217-253 2-38 (251)
347 PRK06300 enoyl-(acyl carrier p 80.6 2.8 6.2E-05 41.9 5.3 36 216-252 4-42 (299)
348 PRK06035 3-hydroxyacyl-CoA deh 80.6 2.5 5.5E-05 41.8 4.9 32 221-253 4-35 (291)
349 PRK07774 short chain dehydroge 80.6 3.2 6.9E-05 39.1 5.4 34 218-252 4-38 (250)
350 COG0771 MurD UDP-N-acetylmuram 80.5 2.3 4.9E-05 45.3 4.8 36 218-254 5-40 (448)
351 cd01974 Nitrogenase_MoFe_beta 80.5 36 0.00077 35.9 13.7 36 216-251 299-334 (435)
352 PRK00683 murD UDP-N-acetylmura 80.4 2.7 5.9E-05 43.8 5.3 34 219-253 2-35 (418)
353 PRK07634 pyrroline-5-carboxyla 80.4 7.2 0.00016 37.1 7.8 112 219-349 3-125 (245)
354 PRK05786 fabG 3-ketoacyl-(acyl 80.3 3.1 6.7E-05 38.8 5.2 33 217-249 2-35 (238)
355 PRK08339 short chain dehydroge 80.3 3.3 7.1E-05 40.0 5.5 36 216-252 4-40 (263)
356 PRK05579 bifunctional phosphop 80.2 5.8 0.00013 41.6 7.6 35 216-250 184-235 (399)
357 COG1063 Tdh Threonine dehydrog 80.1 6.1 0.00013 40.3 7.7 33 221-253 170-202 (350)
358 PRK13394 3-hydroxybutyrate deh 80.1 3.3 7E-05 39.2 5.3 34 218-252 5-39 (262)
359 PF02629 CoA_binding: CoA bind 80.1 1.7 3.7E-05 35.9 3.0 35 220-254 3-38 (96)
360 PRK06949 short chain dehydroge 80.0 3.5 7.6E-05 39.0 5.5 34 216-249 5-39 (258)
361 PLN02240 UDP-glucose 4-epimera 79.9 3.2 7E-05 41.4 5.5 34 217-250 2-36 (352)
362 PRK00421 murC UDP-N-acetylmura 79.8 2.7 5.9E-05 44.3 5.1 35 218-253 5-40 (461)
363 PF03853 YjeF_N: YjeF-related 79.6 13 0.00029 33.9 9.0 48 197-248 6-57 (169)
364 PRK07411 hypothetical protein; 79.5 2.3 5.1E-05 44.3 4.4 36 218-253 36-71 (390)
365 TIGR02622 CDP_4_6_dhtase CDP-g 79.4 3.1 6.8E-05 41.8 5.2 33 218-250 2-35 (349)
366 PRK12829 short chain dehydroge 79.3 3.3 7.1E-05 39.2 5.1 32 218-249 9-41 (264)
367 PRK06125 short chain dehydroge 79.2 3.8 8.3E-05 39.0 5.5 37 216-253 3-40 (259)
368 PRK09287 6-phosphogluconate de 79.2 4 8.8E-05 43.5 6.1 164 231-409 1-207 (459)
369 PRK09186 flagellin modificatio 79.1 3.5 7.5E-05 38.9 5.2 32 218-249 2-34 (256)
370 PRK05562 precorrin-2 dehydroge 79.0 3.6 7.7E-05 39.8 5.2 36 217-252 22-57 (223)
371 PRK08217 fabG 3-ketoacyl-(acyl 78.8 3.8 8.1E-05 38.4 5.3 35 217-252 2-37 (253)
372 COG0362 Gnd 6-phosphogluconate 78.8 8.3 0.00018 40.5 8.0 109 221-345 4-124 (473)
373 PRK08703 short chain dehydroge 78.8 3.9 8.4E-05 38.4 5.4 35 217-252 3-38 (239)
374 PRK07533 enoyl-(acyl carrier p 78.5 3.8 8.2E-05 39.3 5.3 36 217-253 7-45 (258)
375 PRK05867 short chain dehydroge 78.5 4.1 8.8E-05 38.7 5.5 35 217-252 6-41 (253)
376 PRK08063 enoyl-(acyl carrier p 78.5 4 8.8E-05 38.3 5.4 35 218-252 2-37 (250)
377 PLN02427 UDP-apiose/xylose syn 78.4 3.6 7.8E-05 42.0 5.4 37 214-250 8-46 (386)
378 PRK12770 putative glutamate sy 78.4 10 0.00022 38.4 8.6 36 218-253 170-205 (352)
379 PRK06505 enoyl-(acyl carrier p 78.3 3.5 7.7E-05 40.1 5.1 34 218-252 5-41 (271)
380 PRK08416 7-alpha-hydroxysteroi 78.3 4 8.7E-05 39.0 5.4 37 216-252 4-41 (260)
381 PRK09072 short chain dehydroge 78.3 4.2 9.1E-05 38.8 5.5 35 217-252 2-37 (263)
382 PRK09620 hypothetical protein; 78.3 4.1 8.8E-05 39.4 5.4 34 218-251 1-51 (229)
383 PRK07236 hypothetical protein; 78.3 4 8.6E-05 41.7 5.7 41 218-259 4-44 (386)
384 PRK06130 3-hydroxybutyryl-CoA 78.2 3.3 7E-05 41.2 4.9 31 221-252 5-35 (311)
385 PRK05876 short chain dehydroge 78.2 4 8.8E-05 39.7 5.4 35 218-253 4-39 (275)
386 PRK15181 Vi polysaccharide bio 78.1 3.5 7.7E-05 41.6 5.1 36 216-251 11-47 (348)
387 PRK08945 putative oxoacyl-(acy 78.0 3.7 8.1E-05 38.7 5.0 35 218-253 10-45 (247)
388 PRK05808 3-hydroxybutyryl-CoA 77.8 3.2 7E-05 40.8 4.7 32 221-253 4-35 (282)
389 PRK06057 short chain dehydroge 77.7 4.2 9E-05 38.7 5.3 32 218-249 5-37 (255)
390 PRK08642 fabG 3-ketoacyl-(acyl 77.7 4.2 9.2E-05 38.2 5.3 34 218-251 3-37 (253)
391 PRK06079 enoyl-(acyl carrier p 77.7 3.9 8.4E-05 39.1 5.1 34 218-252 5-41 (252)
392 PRK06172 short chain dehydroge 77.7 4.1 8.8E-05 38.5 5.2 36 217-253 4-40 (253)
393 PRK06194 hypothetical protein; 77.6 4.2 9.1E-05 39.3 5.4 35 217-252 3-38 (287)
394 PRK12771 putative glutamate sy 77.6 3.4 7.3E-05 44.9 5.1 34 218-252 135-168 (564)
395 PRK12429 3-hydroxybutyrate deh 77.5 4.2 9.2E-05 38.2 5.2 32 218-249 2-34 (258)
396 PRK06171 sorbitol-6-phosphate 77.4 4.3 9.4E-05 38.7 5.3 35 217-252 6-41 (266)
397 PRK07984 enoyl-(acyl carrier p 77.4 4.1 8.8E-05 39.5 5.2 34 218-252 4-40 (262)
398 PRK07831 short chain dehydroge 77.4 4 8.8E-05 38.9 5.1 34 218-252 15-50 (262)
399 PRK12939 short chain dehydroge 77.3 4.6 9.9E-05 37.8 5.4 33 217-249 4-37 (250)
400 PRK08993 2-deoxy-D-gluconate 3 77.3 4.1 9E-05 38.7 5.1 33 217-249 7-40 (253)
401 PRK08085 gluconate 5-dehydroge 77.3 4.6 0.0001 38.2 5.4 35 217-252 6-41 (254)
402 PLN02695 GDP-D-mannose-3',5'-e 77.3 3.8 8.2E-05 42.0 5.1 32 219-250 20-52 (370)
403 PRK06124 gluconate 5-dehydroge 77.2 4.7 0.0001 38.2 5.5 37 216-253 7-44 (256)
404 PRK07792 fabG 3-ketoacyl-(acyl 77.1 4.6 9.9E-05 40.0 5.6 36 216-252 8-44 (306)
405 PRK08655 prephenate dehydrogen 77.0 7.2 0.00016 41.2 7.3 31 221-252 1-32 (437)
406 TIGR01850 argC N-acetyl-gamma- 77.0 7.9 0.00017 39.6 7.3 33 221-253 1-35 (346)
407 TIGR02130 dapB_plant dihydrodi 77.0 7.9 0.00017 38.6 7.1 115 222-349 2-126 (275)
408 PRK07890 short chain dehydroge 77.0 4.2 9.2E-05 38.4 5.1 34 218-252 3-37 (258)
409 PRK12746 short chain dehydroge 76.9 5 0.00011 37.9 5.6 33 217-249 3-36 (254)
410 PRK08594 enoyl-(acyl carrier p 76.9 4.4 9.5E-05 39.0 5.2 35 217-252 4-41 (257)
411 COG1004 Ugd Predicted UDP-gluc 76.9 9 0.00019 40.2 7.6 91 218-327 308-410 (414)
412 PRK05875 short chain dehydroge 76.8 4.9 0.00011 38.6 5.5 34 217-250 4-38 (276)
413 PRK06398 aldose dehydrogenase; 76.7 4.7 0.0001 38.6 5.4 33 217-249 3-36 (258)
414 PLN02514 cinnamyl-alcohol dehy 76.5 7.8 0.00017 39.2 7.1 42 211-252 172-213 (357)
415 PRK06249 2-dehydropantoate 2-r 76.5 3.3 7.2E-05 41.4 4.4 32 219-250 4-35 (313)
416 PRK06196 oxidoreductase; Provi 76.5 4.9 0.00011 39.8 5.6 35 215-249 21-56 (315)
417 PRK08936 glucose-1-dehydrogena 76.4 5.7 0.00012 37.9 5.8 35 217-251 4-39 (261)
418 PRK06129 3-hydroxyacyl-CoA deh 76.3 3.8 8.3E-05 40.9 4.8 32 221-253 3-34 (308)
419 PRK08265 short chain dehydroge 76.3 5.2 0.00011 38.3 5.5 35 217-252 3-38 (261)
420 PRK07806 short chain dehydroge 76.3 5.6 0.00012 37.4 5.7 34 217-250 3-37 (248)
421 PRK07856 short chain dehydroge 76.3 5.4 0.00012 37.8 5.6 35 217-252 3-38 (252)
422 PF00411 Ribosomal_S11: Riboso 76.1 9.8 0.00021 32.6 6.6 63 196-258 38-101 (110)
423 PLN02662 cinnamyl-alcohol dehy 76.1 4 8.7E-05 40.1 4.8 32 219-250 3-35 (322)
424 PLN00141 Tic62-NAD(P)-related 76.1 4.7 0.0001 38.5 5.2 36 217-252 14-50 (251)
425 PRK05653 fabG 3-ketoacyl-(acyl 76.0 5.2 0.00011 37.1 5.3 35 217-252 2-37 (246)
426 PRK08291 ectoine utilization p 76.0 29 0.00063 35.1 11.1 119 219-350 131-253 (330)
427 PLN02214 cinnamoyl-CoA reducta 75.9 4.6 0.0001 40.7 5.3 33 218-250 8-41 (342)
428 PRK08213 gluconate 5-dehydroge 75.9 5.1 0.00011 38.0 5.4 35 217-252 9-44 (259)
429 PLN02253 xanthoxin dehydrogena 75.8 5.2 0.00011 38.5 5.4 35 217-252 15-50 (280)
430 TIGR03736 PRTRC_ThiF PRTRC sys 75.7 3.5 7.7E-05 40.3 4.2 25 219-243 10-34 (244)
431 TIGR03325 BphB_TodD cis-2,3-di 75.6 5.4 0.00012 38.1 5.5 35 217-252 2-37 (262)
432 PRK07067 sorbitol dehydrogenas 75.6 5.2 0.00011 38.0 5.3 34 218-252 4-38 (257)
433 PF13460 NAD_binding_10: NADH( 75.6 4.8 0.0001 36.1 4.8 31 223-253 1-32 (183)
434 PRK07062 short chain dehydroge 75.5 5.4 0.00012 38.0 5.4 36 216-252 4-40 (265)
435 PRK08264 short chain dehydroge 75.5 5.2 0.00011 37.3 5.2 33 217-249 3-37 (238)
436 PRK01368 murD UDP-N-acetylmura 75.5 3.7 8E-05 43.6 4.6 33 218-252 4-36 (454)
437 PRK07576 short chain dehydroge 75.4 5.4 0.00012 38.3 5.4 35 217-252 6-41 (264)
438 PRK12769 putative oxidoreducta 75.4 4.2 9.1E-05 45.1 5.2 35 218-253 325-359 (654)
439 PRK09135 pteridine reductase; 75.4 5.1 0.00011 37.4 5.1 33 218-250 4-37 (249)
440 PRK10206 putative oxidoreducta 75.3 5.4 0.00012 40.6 5.6 33 221-253 2-37 (344)
441 PRK12937 short chain dehydroge 75.3 5.8 0.00013 37.1 5.5 34 217-250 2-36 (245)
442 PRK06197 short chain dehydroge 75.2 4.7 0.0001 39.7 5.0 34 217-250 13-47 (306)
443 PRK07097 gluconate 5-dehydroge 75.1 5.5 0.00012 38.1 5.4 36 216-252 6-42 (265)
444 PLN02653 GDP-mannose 4,6-dehyd 75.1 4.6 0.0001 40.3 5.0 34 217-250 3-37 (340)
445 PRK05447 1-deoxy-D-xylulose 5- 75.0 9.2 0.0002 40.0 7.2 32 221-252 2-37 (385)
446 PRK07577 short chain dehydroge 75.0 5.5 0.00012 37.0 5.2 32 219-250 2-34 (234)
447 PRK06935 2-deoxy-D-gluconate 3 74.9 5.7 0.00012 37.8 5.4 35 217-252 12-47 (258)
448 TIGR03206 benzo_BadH 2-hydroxy 74.9 5.3 0.00012 37.4 5.1 32 218-249 1-33 (250)
449 PRK11199 tyrA bifunctional cho 74.8 11 0.00024 38.9 7.8 34 219-253 97-131 (374)
450 PLN02986 cinnamyl-alcohol dehy 74.8 5.6 0.00012 39.3 5.5 34 219-252 4-38 (322)
451 PRK05866 short chain dehydroge 74.8 6 0.00013 39.0 5.7 37 215-252 35-72 (293)
452 PRK07035 short chain dehydroge 74.7 5.8 0.00013 37.4 5.4 35 217-252 5-40 (252)
453 PRK05872 short chain dehydroge 74.7 5.9 0.00013 38.9 5.6 35 217-252 6-41 (296)
454 KOG0029 Amine oxidase [Seconda 74.6 4.3 9.4E-05 43.8 4.9 35 218-253 13-47 (501)
455 PRK02705 murD UDP-N-acetylmura 74.6 4.6 9.9E-05 42.4 5.0 31 222-253 2-32 (459)
456 PRK07814 short chain dehydroge 74.6 5.6 0.00012 38.1 5.2 36 217-253 7-43 (263)
457 PLN02178 cinnamyl-alcohol dehy 74.5 9.4 0.0002 39.2 7.2 35 218-252 177-211 (375)
458 PRK08226 short chain dehydroge 74.4 5.7 0.00012 37.7 5.3 34 218-252 4-38 (263)
459 KOG0023 Alcohol dehydrogenase, 74.4 5.9 0.00013 40.5 5.4 44 209-253 172-215 (360)
460 PRK06114 short chain dehydroge 74.4 6.1 0.00013 37.6 5.4 36 217-253 5-41 (254)
461 PRK12921 2-dehydropantoate 2-r 74.3 4.4 9.6E-05 39.8 4.6 29 221-249 1-29 (305)
462 PRK12825 fabG 3-ketoacyl-(acyl 74.2 6.5 0.00014 36.4 5.5 35 218-252 4-39 (249)
463 PRK06550 fabG 3-ketoacyl-(acyl 74.2 5.9 0.00013 36.9 5.2 35 217-252 2-37 (235)
464 PRK06500 short chain dehydroge 74.2 5.4 0.00012 37.4 5.0 34 218-252 4-38 (249)
465 PRK11730 fadB multifunctional 74.1 2.6 5.6E-05 47.4 3.1 32 221-253 314-345 (715)
466 PRK07326 short chain dehydroge 74.1 5.7 0.00012 37.0 5.1 34 218-252 4-38 (237)
467 PRK06077 fabG 3-ketoacyl-(acyl 74.0 6.7 0.00015 36.8 5.6 36 217-252 3-39 (252)
468 PRK12823 benD 1,6-dihydroxycyc 74.0 5.8 0.00012 37.7 5.2 35 217-252 5-40 (260)
469 PF01494 FAD_binding_3: FAD bi 74.0 5 0.00011 39.2 4.9 33 222-255 3-35 (356)
470 PRK06463 fabG 3-ketoacyl-(acyl 74.0 7.1 0.00015 37.0 5.8 34 217-250 4-38 (255)
471 PLN02166 dTDP-glucose 4,6-dehy 74.0 5.6 0.00012 42.0 5.5 37 214-250 114-151 (436)
472 PRK09880 L-idonate 5-dehydroge 73.9 10 0.00022 38.0 7.2 34 218-252 168-202 (343)
473 PF00056 Ldh_1_N: lactate/mala 73.9 6.4 0.00014 34.9 5.1 32 221-253 1-35 (141)
474 PTZ00090 40S ribosomal protein 73.8 16 0.00034 35.2 7.8 67 194-261 156-224 (233)
475 PTZ00129 40S ribosomal protein 73.8 11 0.00023 34.3 6.4 65 194-258 65-138 (149)
476 PLN02730 enoyl-[acyl-carrier-p 73.7 5 0.00011 40.3 4.9 34 215-248 4-40 (303)
477 KOG1429 dTDP-glucose 4-6-dehyd 73.7 5.9 0.00013 40.0 5.1 39 213-252 20-59 (350)
478 TIGR02437 FadB fatty oxidation 73.7 2.7 5.8E-05 47.3 3.1 32 221-253 314-345 (714)
479 TIGR02441 fa_ox_alpha_mit fatt 73.7 2.1 4.5E-05 48.4 2.3 32 221-253 336-367 (737)
480 TIGR03570 NeuD_NnaD sugar O-ac 73.6 5.9 0.00013 35.9 4.9 33 222-254 1-33 (201)
481 PRK06182 short chain dehydroge 73.5 6.1 0.00013 38.0 5.3 31 219-249 2-33 (273)
482 PRK07825 short chain dehydroge 73.5 6.7 0.00015 37.6 5.5 35 217-252 2-37 (273)
483 PLN00198 anthocyanidin reducta 73.4 5.8 0.00013 39.6 5.2 34 217-250 6-40 (338)
484 PRK12859 3-ketoacyl-(acyl-carr 73.4 5.8 0.00013 37.9 5.0 33 217-249 3-38 (256)
485 PRK10537 voltage-gated potassi 73.4 19 0.00042 37.6 9.2 109 220-349 240-359 (393)
486 PRK08017 oxidoreductase; Provi 73.3 5.7 0.00012 37.4 5.0 30 221-250 3-33 (256)
487 TIGR01763 MalateDH_bact malate 73.2 13 0.00028 37.3 7.7 31 221-252 2-33 (305)
488 PRK06914 short chain dehydroge 73.2 6.4 0.00014 37.9 5.3 32 219-250 2-34 (280)
489 PRK12481 2-deoxy-D-gluconate 3 73.2 6 0.00013 37.7 5.1 33 217-249 5-38 (251)
490 PLN02172 flavin-containing mon 73.1 5.2 0.00011 42.6 5.1 35 218-253 8-42 (461)
491 TIGR03366 HpnZ_proposed putati 73.1 12 0.00026 36.4 7.2 34 218-252 119-153 (280)
492 PRK06603 enoyl-(acyl carrier p 73.1 5.7 0.00012 38.2 5.0 34 218-252 6-42 (260)
493 PRK09242 tropinone reductase; 73.1 6.5 0.00014 37.3 5.3 35 217-252 6-41 (257)
494 PRK12748 3-ketoacyl-(acyl-carr 73.0 5.7 0.00012 37.7 4.9 33 217-249 2-37 (256)
495 PRK08415 enoyl-(acyl carrier p 73.0 5.8 0.00013 38.7 5.0 35 218-253 3-40 (274)
496 PRK07478 short chain dehydroge 72.9 6.7 0.00014 37.1 5.3 35 217-252 3-38 (254)
497 PRK12409 D-amino acid dehydrog 72.9 5.2 0.00011 41.1 4.9 32 221-253 2-33 (410)
498 PRK10637 cysG siroheme synthas 72.9 4.7 0.0001 42.8 4.6 35 216-250 8-42 (457)
499 PRK03803 murD UDP-N-acetylmura 72.8 5.4 0.00012 41.8 5.1 33 220-253 6-38 (448)
500 PRK07063 short chain dehydroge 72.8 6.5 0.00014 37.4 5.2 35 217-252 4-39 (260)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=1.2e-132 Score=1021.64 Aligned_cols=410 Identities=84% Similarity=1.331 Sum_probs=406.3
Q ss_pred CCHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHH
Q 014463 1 MNALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (424)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev 80 (424)
|++|++++++|++|++++++++++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463 81 NALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (424)
Q Consensus 81 ~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~ 160 (424)
++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||+.|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463 161 HGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240 (424)
Q Consensus 161 ~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~ 240 (424)
+|++|+++||||+ .+|||.+|.++||+||+++++++++++|.+++|+||+||||||||+++|++|+
T Consensus 161 ~g~~~~~vtGkp~--------------~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~ 226 (410)
T PLN02477 161 HGFSPAVVTGKPI--------------DLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIH 226 (410)
T ss_pred hCCCCceEeCCCc--------------ccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF 320 (424)
Q Consensus 241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki 320 (424)
++|+|||||||++|++|||+|||+++|++++++++++.+|++++.++++++|..+||||+|||++++||++||++++||+
T Consensus 227 e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~~~na~~i~ak~ 306 (410)
T PLN02477 227 EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVINKENAADVKAKF 306 (410)
T ss_pred HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCCHhHHHHcCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||+++++|++++|+++|+++|.++++++++.|+++++
T Consensus 307 I~egAN~p~t~ea~~~L~~rGI~~~PD~~aNaGGVivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~ 386 (410)
T PLN02477 307 IVEAANHPTDPEADEILRKKGVVVLPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNC 386 (410)
T ss_pred EEeCCCCCCCHHHHHHHHHCCcEEEChHHhCCCCeeeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCCC
Q 014463 401 NLRMGAFTLGVNRVAQATLLRGWE 424 (424)
Q Consensus 401 ~~r~aA~~~A~~rv~~a~~~rg~~ 424 (424)
++|+|||++|++||+++|+.||||
T Consensus 387 ~~r~aA~~~a~~rv~~a~~~rG~~ 410 (410)
T PLN02477 387 SLRMGAFTLGVNRVARATVLRGWE 410 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-130 Score=987.28 Aligned_cols=408 Identities=48% Similarity=0.839 Sum_probs=402.7
Q ss_pred CHHHHHHHHHHHHHHHcCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHH
Q 014463 2 NALTATNRNFRYAARILGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81 (424)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~ 81 (424)
++|++++.++.+|++.+++++.++++|++|+|.++|++||+||||++++|+|||||||+++||+|||+||||++|++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhh
Q 014463 82 ALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFH 161 (424)
Q Consensus 82 ~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~ 161 (424)
+||+||||||||++||||||||||++||+.+|++|+|||+|+|+++|.+++||++||||||+||++++|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH
Q 014463 162 GH-SPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH 240 (424)
Q Consensus 162 g~-~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~ 240 (424)
|. .||++||||+ ++|||.+|.++|||||+++++++++.+|.+++|+||+||||||||+++|++|+
T Consensus 162 g~~~~gv~TGKp~--------------~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~ 227 (411)
T COG0334 162 GNSAPGVFTGKPL--------------ELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLH 227 (411)
T ss_pred CCCCcceecCCcc--------------cccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHH
Confidence 87 4999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceE
Q 014463 241 EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKF 320 (424)
Q Consensus 241 ~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~aki 320 (424)
+.|+|||++||++|+||||+|||+++|.+.+++.+++..|++++.++++++|+++||||+|||++|+||++||++++||+
T Consensus 228 ~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~~~na~~l~ak~ 307 (411)
T COG0334 228 ELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVITEDNADQLKAKI 307 (411)
T ss_pred HcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccchhhHHHhhhcE
Confidence 99999999999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 321 IIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 321 IvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
|+||||+|+|++|+++|.+|||+|+||+++|||||++|||||+||.++++|++|+|+++|+++|.++++.+++.++++++
T Consensus 308 V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~~~~~~~~ 387 (411)
T COG0334 308 VVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQAAKEYGV 387 (411)
T ss_pred EEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHcCC
Q 014463 401 NLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 401 ~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
++|+|||++|++||++||+.|||
T Consensus 388 ~~r~aA~~~a~~Rva~Am~~~G~ 410 (411)
T COG0334 388 DLRTAAYILAFERVADAMKARGW 410 (411)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-128 Score=996.17 Aligned_cols=408 Identities=30% Similarity=0.465 Sum_probs=400.8
Q ss_pred CHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCC
Q 014463 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (424)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t 76 (424)
++||+++.+|++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||+++
T Consensus 19 eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p~v~ 98 (445)
T PRK14030 19 EYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVN 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecCCCC
Confidence 4799999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHH
Q 014463 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (424)
Q Consensus 77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~ 156 (424)
++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||+.|||||||||++++|+||+|+
T Consensus 99 ~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~ 178 (445)
T PRK14030 99 LSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGM 178 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH
Q 014463 157 YSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA 236 (424)
Q Consensus 157 ~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a 236 (424)
|+++.++.++++||||+ .+|||.+|.++|||||++++++++++.|.+++|+||+||||||||+++|
T Consensus 179 y~~~~~~~~g~vTGkp~--------------~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA 244 (445)
T PRK14030 179 YKKLTREFTGTLTGKGL--------------EFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAA 244 (445)
T ss_pred HHhccCccccEEEcccc--------------ccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHH
Confidence 99999988999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCEEEEEEcCCCceeCCCCCCHHH---HHHHHHhcCCcc-----cCCCCeeecCCcccccccceeeeccccCcc
Q 014463 237 KFFHEHGGKVVAVSDITGAIKNPNGIDVPA---LLKYKKSNKSLN-----DFQGGNAMDLNDLLVHECDVLVPCALGGVL 308 (424)
Q Consensus 237 ~~L~~~GakVVaVsD~~G~i~~~~GlDi~~---L~~~~~~~g~v~-----~~~~~~~i~~~~ll~~~~DIliPaA~~~~I 308 (424)
++|++.|+|||+|||++|+||||+|||+++ |++++++++++. .||+++.++++++|+++||||+|||++|+|
T Consensus 245 ~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I 324 (445)
T PRK14030 245 TKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNEL 324 (445)
T ss_pred HHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccC
Confidence 999999999999999999999999999888 888999888876 788889999999999999999999999999
Q ss_pred cccccccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHH
Q 014463 309 NKENAADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMM 385 (424)
Q Consensus 309 t~~na~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~ 385 (424)
|++||+++ +||+|+||||+|+||+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.
T Consensus 325 ~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI~~vPD~~aNAGGVivs~~E~~qn~~~~~w~~eeV~~~L~~~m~ 404 (445)
T PRK14030 325 NGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQLFAPGKAVNAGGVATSGLEMSQNAMHLSWSAEEVDEKLHQIMS 404 (445)
T ss_pred CHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCCEEeCcceecCCCeeeehhhhhccccccCcCHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463 386 SAFKDIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 386 ~~~~~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
++|+++++.+++++ +++|+|||++|++||++||..|||
T Consensus 405 ~~~~~v~~~~~~~~~~~~lr~aA~~~a~~rva~a~~~rG~ 444 (445)
T PRK14030 405 GIHEQCVKYGKEGDGYINYVKGANIAGFMKVAKAMLAQGV 444 (445)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999 999999999999999999999998
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-125 Score=973.75 Aligned_cols=408 Identities=30% Similarity=0.497 Sum_probs=400.1
Q ss_pred CHHHHHHHHHHHHHHHcCCChH-----HHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCC
Q 014463 2 NALTATNRNFRYAARILGLDSK-----LERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVD 76 (424)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t 76 (424)
++|++++.+|++|+++++++|+ ++++|++|+|+++|++||+||||++++|+|||||||+++||+||||||||+++
T Consensus 23 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p~v~ 102 (445)
T PRK09414 23 EFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVN 102 (445)
T ss_pred hHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecCCCC
Confidence 5899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHH
Q 014463 77 PDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDE 156 (424)
Q Consensus 77 ~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~ 156 (424)
.+|+.+||+||||||||++||||||||||.+||+++|+.|+|||+|+|+++|.+++||..|||+|||||++++|+||+|+
T Consensus 103 ~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~ 182 (445)
T PRK09414 103 LSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ 182 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHH
Q 014463 157 YSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAA 236 (424)
Q Consensus 157 ~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a 236 (424)
|+++.++..|++||||+ .+|||.+|.++|||||++++++++++.+.+++|+||+||||||||+++|
T Consensus 183 y~~~~~~~~g~vtGkp~--------------~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A 248 (445)
T PRK09414 183 YKRLTNRFEGVLTGKGL--------------SFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAI 248 (445)
T ss_pred HHhhcCcceEEEecCCc--------------ccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHH
Confidence 99999987799999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc-CCcccCC---CCeeecCCcccccccceeeeccccCcccccc
Q 014463 237 KFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN-KSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNKEN 312 (424)
Q Consensus 237 ~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~-g~v~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~~n 312 (424)
++|++.|+|||+|||++|++|||+|||+++|+++++++ +++.+|+ +++.++++++|+++||||||||++|+||++|
T Consensus 249 ~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It~~~ 328 (445)
T PRK09414 249 EKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELDEED 328 (445)
T ss_pred HHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCCHHH
Confidence 99999999999999999999999999999999999887 5888887 5677899999999999999999999999999
Q ss_pred cccc---cceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHH
Q 014463 313 AADV---KAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFK 389 (424)
Q Consensus 313 a~~i---~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~ 389 (424)
+.++ +||+|+||||+|+||+|+++|++|||+|+||+++||||||+|||||+||.++++|++++|+++|+++|.++|+
T Consensus 329 a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI~~vPD~laNaGGVivs~~E~~qn~~~~~w~~~~V~~~l~~~m~~~~~ 408 (445)
T PRK09414 329 AKTLIANGVKAVAEGANMPSTPEAIEVFLEAGVLFAPGKAANAGGVATSGLEMSQNASRLSWTFEEVDARLHDIMKNIHH 408 (445)
T ss_pred HHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeehhhccccccceecHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463 390 DIKTMCQTHN--CNLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 390 ~v~~~a~~~~--~~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
++++.+++++ +++|+|||++|++||++||+.|||
T Consensus 409 ~~~~~~~~~~~~~~~r~aA~~~a~~rv~~a~~~rG~ 444 (445)
T PRK09414 409 ACVETAEEYGKPGNYVAGANIAGFVKVADAMLAQGV 444 (445)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999 999999999999999999999997
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.8e-121 Score=941.20 Aligned_cols=407 Identities=30% Similarity=0.465 Sum_probs=389.0
Q ss_pred HHHHHHHHHHHHHHHcCCChHH-----HHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCH
Q 014463 3 ALTATNRNFRYAARILGLDSKL-----ERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDP 77 (424)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~ 77 (424)
++|.++..+..-..+++-+|++ +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++++
T Consensus 20 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~ 99 (444)
T PRK14031 20 YHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNL 99 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCH
Confidence 4566666666666777766665 56999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCceeEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHh
Q 014463 78 DEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEY 157 (424)
Q Consensus 78 ~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~ 157 (424)
+|+++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||+.|||||||||++++|+||+|+|
T Consensus 100 ~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y 179 (444)
T PRK14031 100 GILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMY 179 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHH
Q 014463 158 SKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAK 237 (424)
Q Consensus 158 ~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~ 237 (424)
+++.++.+|++||||+ .+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|+
T Consensus 180 ~~~~~~~~g~~tgkp~--------------~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~ 245 (444)
T PRK14031 180 KKLSHEFTGTFTGKGR--------------EFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAE 245 (444)
T ss_pred HhhcCCcceEECCCcc--------------ccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHH
Confidence 9999988999999999 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCEEEEEEcCCCceeCCCCCCHHHHH---HHHHh-cCCcccCC---CCeeecCCcccccccceeeeccccCcccc
Q 014463 238 FFHEHGGKVVAVSDITGAIKNPNGIDVPALL---KYKKS-NKSLNDFQ---GGNAMDLNDLLVHECDVLVPCALGGVLNK 310 (424)
Q Consensus 238 ~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~---~~~~~-~g~v~~~~---~~~~i~~~~ll~~~~DIliPaA~~~~It~ 310 (424)
+|++.|+|||+|||++|++|||+|||+++|. +++.+ ++++.+|+ +++.++++++|+.+||||+|||++++||+
T Consensus 246 ~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~~ 325 (444)
T PRK14031 246 KVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELNG 325 (444)
T ss_pred HHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccCH
Confidence 9999999999999999999999999999987 55555 67788886 67788999999999999999999999999
Q ss_pred cccccccce---EEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHH
Q 014463 311 ENAADVKAK---FIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSA 387 (424)
Q Consensus 311 ~na~~i~ak---iIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~ 387 (424)
+||++++|+ +|+||||+|+||+|+++|++|||+++||+++|||||++|||||+||+++++|++|+|+++|+++|.++
T Consensus 326 ~na~~l~a~g~~~V~EgAN~P~t~eA~~~L~~rgI~~~PD~~aNAGGVivs~~E~~qn~~~~~W~~eeV~~~L~~~m~~~ 405 (444)
T PRK14031 326 DDARQLVANGVIAVSEGANMPSTPEAIKVFQDAKILYAPGKAANAGGVSVSGLEMTQNSIKLSWSSEEVDEKLKSIMKNI 405 (444)
T ss_pred HHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHCCcEEeChhhccCCCeeeehhhhhccccccCCCHHHHHHHHHHHHHHH
Confidence 999999986 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHcCC
Q 014463 388 FKDIKTMCQTH--NCNLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 388 ~~~v~~~a~~~--~~~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
|+++++.++++ ++++|+|||++|++||++||+.|||
T Consensus 406 ~~~v~~~~~~~~~~~~~r~aA~~~a~~rva~a~~~~G~ 443 (444)
T PRK14031 406 HEACVQYGTEADGYVNYVKGANVAGFMKVAKAMMAQGI 443 (444)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999988 6999999999999999999999997
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-120 Score=935.23 Aligned_cols=387 Identities=30% Similarity=0.508 Sum_probs=375.6
Q ss_pred HHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 014463 23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK 102 (424)
Q Consensus 23 ~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaK 102 (424)
.++++|++|+|+|+|++||+||||++++|+|||||||+++||+||||||||+++++|+++||++|||||||++||+||||
T Consensus 54 ~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgK 133 (454)
T PTZ00079 54 GVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGK 133 (454)
T ss_pred HHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhh
Q 014463 103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEK 182 (424)
Q Consensus 103 ggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~ 182 (424)
|||.+||+.+|+.|++|++|+|+++|.++|||+.||||||+||++++|+||+++|+++.+..++++||||+
T Consensus 134 GGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~--------- 204 (454)
T PTZ00079 134 GGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNV--------- 204 (454)
T ss_pred eeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred hhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCC
Q 014463 183 QRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGI 262 (424)
Q Consensus 183 ~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~Gl 262 (424)
.+|||.+|.++|||||+++++++++.++.+++|+||+||||||||+++|++|++.|+|||+|||++|+||||+||
T Consensus 205 -----~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gl 279 (454)
T PTZ00079 205 -----KWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGF 279 (454)
T ss_pred -----CCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhc-CCcccCC----CCeeecCCcccccccceeeeccccCcccccccccc---cceEEEecCCCCCCH
Q 014463 263 DVPAL---LKYKKSN-KSLNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAANHPTDP 331 (424)
Q Consensus 263 Di~~L---~~~~~~~-g~v~~~~----~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~ 331 (424)
|+++| .++++.+ +++.+|+ +++.++++++|+++||||+|||++|+||.+||+++ +||+|+||||+|+||
T Consensus 280 d~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~ 359 (454)
T PTZ00079 280 TKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTI 359 (454)
T ss_pred CHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 99887 6677654 6777775 57789999999999999999999999999999988 999999999999999
Q ss_pred HHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Q 014463 332 EADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTL 409 (424)
Q Consensus 332 eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~ 409 (424)
+|+++|++|||+|+||+++|||||++|||||+||+++++|++|+|+++|+++|.++|+++++.++++ ++++|+|||+.
T Consensus 360 eA~~~L~~~GI~~~PD~~aNAGGV~vS~~E~~Qn~~~~~W~~eeV~~~L~~~M~~~~~~~~~~a~~~~~~~~~r~~A~i~ 439 (454)
T PTZ00079 360 EATHLFKKNGVIFCPGKAANAGGVAISGLEMSQNAARLQWTAEEVDEKLREIMKSIFEACVKYAEKYGGKSDLVAGANIA 439 (454)
T ss_pred HHHHHHHHCCcEEEChhhhcCCCeeeehHHhhhhhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 58999999999
Q ss_pred HHHHHHHHHHHcCC
Q 014463 410 GVNRVAQATLLRGW 423 (424)
Q Consensus 410 A~~rv~~a~~~rg~ 423 (424)
|++||++||..|||
T Consensus 440 ~~~rva~Am~~~G~ 453 (454)
T PTZ00079 440 GFLKVADSMIEQGC 453 (454)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999999997
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-105 Score=808.34 Aligned_cols=387 Identities=51% Similarity=0.805 Sum_probs=365.3
Q ss_pred HHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCce
Q 014463 23 KLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAK 102 (424)
Q Consensus 23 ~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaK 102 (424)
.++.+|..|+|+++|++||.+|+|+.+|+.||||||+.+|||+||||||||++++|++++||+.||||||+.++|+||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 34557888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhh
Q 014463 103 GGIGCNPRELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEK 182 (424)
Q Consensus 103 ggI~~dP~~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~ 182 (424)
|||.+||+.+|.+|+||++|+|+++|.++|||.+|+|+|||||+++||.|++++|++.+|++++++||||+
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i--------- 216 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPI--------- 216 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCCCCCCCCchhHHHHHHHHHHHHHHhC--CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCC
Q 014463 183 QRNKNDLGGSLGREAATGLGVFFATEALLAEHG--KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPN 260 (424)
Q Consensus 183 ~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~ 260 (424)
.+|||.+|.+||||||+++++.++++++ .+++|+||+||||||||++++++|++.|+++|+|+|++|+|+||+
T Consensus 217 -----~~GGs~~R~~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~ 291 (514)
T KOG2250|consen 217 -----SLGGSHGRYEATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPD 291 (514)
T ss_pred -----ccCCccCcccccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCC
Confidence 9999999999999999999999999887 669999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCcccCCCCeeecCC-------cccccccceeeeccccCcccccccccccce---EEEecCCCCCC
Q 014463 261 GIDVPALLKYKKSNKSLNDFQGGNAMDLN-------DLLVHECDVLVPCALGGVLNKENAADVKAK---FIIEAANHPTD 330 (424)
Q Consensus 261 GlDi~~L~~~~~~~g~v~~~~~~~~i~~~-------~ll~~~~DIliPaA~~~~It~~na~~i~ak---iIvEgAN~p~t 330 (424)
|||+.+|.+++++++++.+|++++...+. .+|..+||||+|||.+|+||.+||..+.++ +||||||+|+|
T Consensus 292 Gid~~eL~~~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~~~nA~~lvak~~~~IvEGAN~ptT 371 (514)
T KOG2250|consen 292 GIDIEELLDLADEKKTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEITGENAKALVAKGCKYIVEGANMPTT 371 (514)
T ss_pred CCCHHHHHHHHHhhccccccccccccCccccccCcchhhHhhCcEEeecCccCcccHhhHHHHHhcCCcEEEecCCCCCC
Confidence 99999999999999999999988755443 678899999999999999999999999666 99999999999
Q ss_pred HHHHHHHHhCCceEeccccccccCcchhhHHHhhhcc-------ccCCCHHHHHHHHHHHHHHHHHHH----HHHHHHcC
Q 014463 331 PEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ-------GFMWEEEKVNHELKRYMMSAFKDI----KTMCQTHN 399 (424)
Q Consensus 331 ~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~-------~~~w~~e~v~~~l~~~m~~~~~~v----~~~a~~~~ 399 (424)
|||+++|.++||+++||..||+|||++|||||+||++ .+.|++|.|.+.|.+.|...+... ++.+++++
T Consensus 372 peA~~vlek~gv~i~Pd~~aNaGGVtvS~~E~l~nl~~~s~g~~~~~~~~e~v~~~L~~v~e~~~~~~~~~~l~~~~~~~ 451 (514)
T KOG2250|consen 372 PEADEVLEKAGVLIIPDIYANAGGVTVSYFEWLQNLNHVSYGKLTFKWTEEKVDSLLASVQENLSRKQGKANLEPAAEFK 451 (514)
T ss_pred hhHHHHHHhCCeEEechhhccCCCeeeeHHHHHHhcccccccceeEEeehhhHHHHHHHHHHHHHHhccCcccchHHHhh
Confidence 9999999999999999999999999999999999999 689999999999999877777666 54444322
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463 400 --------CNLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 400 --------~~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
.+++..|++.++.|++++|..+|+
T Consensus 452 ~~~~~~~~~~lv~gal~~~~~kva~ai~~~g~ 483 (514)
T KOG2250|consen 452 DRIQGTSEKDLVHGALIATFNKVARAITDQGD 483 (514)
T ss_pred hhhcCCCchHHhhhhHHHHHHHHHHHHHHHHH
Confidence 388899999999999999988874
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=1.3e-83 Score=703.86 Aligned_cols=365 Identities=24% Similarity=0.295 Sum_probs=343.0
Q ss_pred cCCChHHHHhhcCCCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecC-----------CCHHHHHHHHHH
Q 014463 18 LGLDSKLERSLLIPFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQL 86 (424)
Q Consensus 18 ~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~-----------~t~~ev~~LA~~ 86 (424)
.++||+.++.|..|++.+.+.+|+ | ..|+|||+||+.+ +||||||||+ ++++|+++||+|
T Consensus 459 Frldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~t 529 (1002)
T PTZ00324 459 FRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAST 529 (1002)
T ss_pred EeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHH
Confidence 379999999999999999999999 4 8999999999998 9999999998 889999999999
Q ss_pred HHHHHhhcCCCCCCceeEEecCCCCCCH---HHHHHHHHHHHHHHhhccCCCCcc-----------ccCCCCCCHHHHHH
Q 014463 87 MTWKTAVAAIPYGGAKGGIGCNPRELSM---SELERLTRVFTQKIHDLIGIHRDV-----------PAPDMGTNSQTMAW 152 (424)
Q Consensus 87 Mt~K~Al~~lp~GGaKggI~~dP~~~s~---~e~e~~~r~~~~~l~~~iG~~~di-----------~apDvgt~~~~m~~ 152 (424)
|||||| +||+|||||||++||+.+++ .|+|+++|+|+++|.+++||..|| ||||+||+++.|+|
T Consensus 530 qt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdw 607 (1002)
T PTZ00324 530 QLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDW 607 (1002)
T ss_pred HHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHH
Confidence 999997 99999999999999999887 889999999999999999999998 99999999999999
Q ss_pred HHHHhhhhhCCC--CceecCCCcchhhhhhhhhhccccCCCCCCCC-chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe--
Q 014463 153 ILDEYSKFHGHS--PAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE-AATGLGVFFATEALLAEHGKSISNMKFAIQG-- 227 (424)
Q Consensus 153 i~d~~~~~~g~~--~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~-~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-- 227 (424)
| ++|++.+|++ ++++||||. .+||+.++. ++||+||+++++++++++|+++++.||++||
T Consensus 608 a-~~~s~~rG~~~~~af~TGKp~--------------~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp 672 (1002)
T PTZ00324 608 A-ALHAKKRGYPFWKSFTTGKSP--------------SMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGP 672 (1002)
T ss_pred H-HHHHHHcCCCCCCCEEeCCCc--------------ccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCC
Confidence 9 8999999985 899999999 999999998 9999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC---------------------CCeee
Q 014463 228 FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ---------------------GGNAM 286 (424)
Q Consensus 228 fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~---------------------~~~~i 286 (424)
||+||++.++++. +|||||+|++|++|||+|||+++|.+++++++++.+|+ +++.+
T Consensus 673 ~GDVGgN~~lls~---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i 749 (1002)
T PTZ00324 673 DGDLGSNELLLSK---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIV 749 (1002)
T ss_pred CchHHHHHHHHhC---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCcccee
Confidence 9999999999874 79999999999999999999999999999998998653 22222
Q ss_pred -----cCCcc---cccccceeeeccc-cCccccccc--------ccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463 287 -----DLNDL---LVHECDVLVPCAL-GGVLNKENA--------ADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 349 (424)
Q Consensus 287 -----~~~~l---l~~~~DIliPaA~-~~~It~~na--------~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l 349 (424)
.++++ +.++||||||||. +++||++|+ .+++||+||||||+|+||+|+.+|++|||+++||++
T Consensus 750 ~~g~~~~~~~~l~~~~~vDlliPaggr~~~I~~~Na~~~~~~~~~~irakvIvEGANlpiT~eAr~~L~~~Gv~IipD~l 829 (1002)
T PTZ00324 750 ESGLRFRNEFHLLPYSDADVFVPCGGRPRSVTLFNVGRFFDEKNGKLRFKIIVEGANLFITQDARLALEECGVILFKDAS 829 (1002)
T ss_pred ccccccchhhccccCCCccEEEECCCCcCccCHHHHhhhhhccccCceeEEEEECCCCCCCHHHHHHHHHCCCEEcCcch
Confidence 23444 5789999999998 999999999 789999999999999999999999999999999999
Q ss_pred ccccCcchhhHHHhhhcc------------------ccCCC--HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463 350 ANSGGVTVSYFEWVQNIQ------------------GFMWE--EEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 409 (424)
Q Consensus 350 aNaGGVi~s~~E~~qn~~------------------~~~w~--~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 409 (424)
+|+|||++|||||+||++ ..+|+ .++|+++|+++|...++.|++.+++.++++|+||..+
T Consensus 830 aNsGGV~~S~~Evl~~l~l~d~ef~~~m~~~~~~~~~~f~~~yv~eV~~~L~~~a~~ef~~i~~~~~~~~~~~r~asd~l 909 (1002)
T PTZ00324 830 ANKGGVTSSSLEVLAALALSDEEFAEHMCVKDATDAPEFYKKYVKEILDRIEENARLEFNAIWREELRTGKPRCLLADVL 909 (1002)
T ss_pred hcCCCcEeeHHHHHhccccchhhhhhhhcccccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 999999999999999998 78899 8999999999999999999999999999999999977
Q ss_pred HH
Q 014463 410 GV 411 (424)
Q Consensus 410 A~ 411 (424)
..
T Consensus 910 S~ 911 (1002)
T PTZ00324 910 SR 911 (1002)
T ss_pred HH
Confidence 54
No 9
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=4.3e-73 Score=548.65 Aligned_cols=241 Identities=32% Similarity=0.501 Sum_probs=231.8
Q ss_pred cCCCcchhhhhhhhhhccccCCCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 014463 169 TGKPIVSIKRETEKQRNKNDLGGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 248 (424)
Q Consensus 169 tGkp~~~i~~~~~~~~~~~~~GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa 248 (424)
||||+ .+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|++.|+|||+
T Consensus 1 TGKp~--------------~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~Gakvva 66 (254)
T cd05313 1 TGKGL--------------SWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVT 66 (254)
T ss_pred CCCCC--------------cCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 89999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCceeCCCCCCHHHH---HHHHHhcCC-cccCC----CCeeecCCcccccccceeeeccccCcccccccccc---c
Q 014463 249 VSDITGAIKNPNGIDVPAL---LKYKKSNKS-LNDFQ----GGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV---K 317 (424)
Q Consensus 249 VsD~~G~i~~~~GlDi~~L---~~~~~~~g~-v~~~~----~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i---~ 317 (424)
|||++|++|||+|||+++| .++++++++ +.+|+ +++.++++++|+++||||+|||++++||++||+++ +
T Consensus 67 VsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ 146 (254)
T cd05313 67 LSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNG 146 (254)
T ss_pred EECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCCHHHHHHHHHcC
Confidence 9999999999999999988 566766665 45553 67889999999999999999999999999999999 8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014463 318 AKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQT 397 (424)
Q Consensus 318 akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~ 397 (424)
||+|+||||+|+||+|+++|++|||+|+||+++|+||||+|||||+||+++++|++|+|+++|+++|.++|+++++++++
T Consensus 147 ak~I~EgAN~p~t~~a~~~L~~rGI~vvPD~laNaGGVivs~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~ 226 (254)
T cd05313 147 CKYVAEGANMPCTAEAIEVFRQAGVLFAPGKAANAGGVAVSGLEMSQNSQRLSWTAEEVDAKLKDIMKNIHDACAETAKK 226 (254)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHCCcEEECchhhcCCCeeeeHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCHHHHHHHHHHHHHHHHHHHcCC
Q 014463 398 HN--CNLRMGAFTLGVNRVAQATLLRGW 423 (424)
Q Consensus 398 ~~--~~~r~aA~~~A~~rv~~a~~~rg~ 423 (424)
++ ++||+|||++|++||++||+.||+
T Consensus 227 ~~~~~~lr~aA~~~a~~rv~~a~~~rG~ 254 (254)
T cd05313 227 YGDPPDLVAGANIAGFLKVADAMLAQGV 254 (254)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99 899999999999999999999996
No 10
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=100.00 E-value=1.1e-65 Score=496.56 Aligned_cols=233 Identities=50% Similarity=0.850 Sum_probs=223.9
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCC-CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463 190 GGSLGREAATGLGVFFATEALLAEHGKS-ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALL 268 (424)
Q Consensus 190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~ 268 (424)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 8999999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-cccCC-----CCeeecCC-cccccccceeeeccccCcccccccc-ccc--ceEEEecCCCCCCHHHHHHHH
Q 014463 269 KYKKSNKS-LNDFQ-----GGNAMDLN-DLLVHECDVLVPCALGGVLNKENAA-DVK--AKFIIEAANHPTDPEADEILS 338 (424)
Q Consensus 269 ~~~~~~g~-v~~~~-----~~~~i~~~-~ll~~~~DIliPaA~~~~It~~na~-~i~--akiIvEgAN~p~t~eA~~iL~ 338 (424)
+++++.++ +..|+ +.+.++++ ++|+++||||+|||++++||++|++ .++ ||+||||||+|+||+|+++|+
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~~L~ 160 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADEILR 160 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHHHHH
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHHHHH
Confidence 99999998 99998 56788884 9999999999999999999999999 999 999999999999999999999
Q ss_pred hCCceEeccccccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 014463 339 KKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVAQAT 418 (424)
Q Consensus 339 ~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~~a~ 418 (424)
+|||+|+||+++|+||||+||+||+||+++++|++++|.++++++|.++++++++.|+++++++|+|||++|++||++||
T Consensus 161 ~rGI~viPD~~aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~~~aA~~~A~~rv~~a~ 240 (244)
T PF00208_consen 161 ERGILVIPDFLANAGGVIVSYFEWLQNLQGLFWTEEEVFEKLEEIMDRAFKRVLERAEEEGISLRQAAYILAFERVAAAM 240 (244)
T ss_dssp HTT-EEE-HHHHTTHHHHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HCCCEEEcchhhcCCCeEeehhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q 014463 419 LLRG 422 (424)
Q Consensus 419 ~~rg 422 (424)
+.||
T Consensus 241 ~~rG 244 (244)
T PF00208_consen 241 KLRG 244 (244)
T ss_dssp HHTT
T ss_pred HhcC
Confidence 9998
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=100.00 E-value=5.5e-62 Score=466.31 Aligned_cols=226 Identities=54% Similarity=0.894 Sum_probs=222.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHH
Q 014463 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK 269 (424)
Q Consensus 190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~ 269 (424)
|||.+|.++|||||++++++++++++.+++++||+|||||+||++++++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463 270 YKKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 349 (424)
Q Consensus 270 ~~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l 349 (424)
++++++++..|++++.++++++++.+||||||||++++||++|+++++||+|+||||+|+||+|+++|++|||+|+||++
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~~rGi~~~PD~~ 160 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQITADNADRIKAKIIVEAANGPTTPEADEILHERGVLVVPDIL 160 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccCHHHHhhceeeEEEeCCCCCCCHHHHHHHHHCCCEEEChHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463 350 ANSGGVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 415 (424)
Q Consensus 350 aNaGGVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 415 (424)
+|+||||+||+||+||++++.|++++|.+++++.|.+++.++++.++++++++|++||.+|++||+
T Consensus 161 aNaGGvi~s~~E~~~~~~~~~~~~~~v~~~l~~~i~~~~~~v~~~a~~~~~~~~~aA~~~a~~rl~ 226 (227)
T cd01076 161 ANAGGVTVSYFEWVQNLQGFYWDEEEVNSRLETKMREAFEAVLETAEKYGVDLRTAAYVLALERVA 226 (227)
T ss_pred hcCcchhhhHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999996
No 12
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=100.00 E-value=4.5e-61 Score=457.03 Aligned_cols=217 Identities=40% Similarity=0.646 Sum_probs=212.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
+|||||++++++++++++.+++|+||+||||||||+++|++|+++|+++|+|||++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 69999999999999999989999999999999999999999999999999999999999999 99999999999988999
Q ss_pred ccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcch
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTV 357 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~ 357 (424)
..|+.++.+++++++..+||||||||++++||++|+++++||+|+|+||+|+|++++++|++|||+|+||+++|+|||++
T Consensus 80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~~a~~l~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~Pd~~~NaGGvi~ 159 (217)
T cd05211 80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLENAKKLKAKVVAEGANNPTTDEALRILHERGIVVAPDIVANAGGVIV 159 (217)
T ss_pred cccCcccccCcccceeccccEEeeccccCccChhhHhhcCccEEEeCCCCCCCHHHHHHHHHCCcEEEChHHhcCCCeEe
Confidence 99987777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463 358 SYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 415 (424)
Q Consensus 358 s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 415 (424)
|||||+||.++++|++++|.++++++|.++++++++.++++++++|+|||++|++||+
T Consensus 160 s~~E~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a~~rva 217 (217)
T cd05211 160 SYFEWVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILAFERIA 217 (217)
T ss_pred EHHHhcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999985
No 13
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=9.6e-48 Score=338.16 Aligned_cols=130 Identities=52% Similarity=0.895 Sum_probs=124.4
Q ss_pred CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEEecCCC
Q 014463 31 PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVAAIPYGGAKGGIGCNPR 110 (424)
Q Consensus 31 p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~t~~ev~~LA~~Mt~K~Al~~lp~GGaKggI~~dP~ 110 (424)
|+|+++|+|||+||||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhh
Q 014463 111 ELSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKF 160 (424)
Q Consensus 111 ~~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~ 160 (424)
++|..|+|+++|+|+++|.+++|+..|||||||||+++||+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999864
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=100.00 E-value=5.2e-44 Score=336.10 Aligned_cols=194 Identities=27% Similarity=0.429 Sum_probs=177.7
Q ss_pred chhHHHHHHHHHHHHHHh--CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 197 AATGLGVFFATEALLAEH--GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+||+||+++++++++++ +.+++|++|+|||||+||+++++.|.+.|++|+ ++|.+ .+++.++++..
T Consensus 3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~~ 71 (200)
T cd01075 3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAELF 71 (200)
T ss_pred ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHHc
Confidence 699999999999999975 778999999999999999999999999999999 88864 45565555532
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccccCcccccccccccceEEEecCCCCCC-HHHHHHHHhCCceEecccccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPTD-PEADEILSKKGVVILPDIYANSG 353 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t-~eA~~iL~~rGI~viPD~laNaG 353 (424)
+++.+++++++..+|||++|||++++||++|+++++||+|+|+||+|+| ++++++|+++||+|+||+++|+|
T Consensus 72 -------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaG 144 (200)
T cd01075 72 -------GATVVAPEEIYSVDADVFAPCALGGVINDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAG 144 (200)
T ss_pred -------CCEEEcchhhccccCCEEEecccccccCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCc
Confidence 3566778899999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CcchhhHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 014463 354 GVTVSYFEWVQNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLGVNRVA 415 (424)
Q Consensus 354 GVi~s~~E~~qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~rv~ 415 (424)
||++|||||+|+. +++++++++.+ .+++.++++.++++++++|+|||.+|++||.
T Consensus 145 Gv~~~~~e~~~~~------~~~~~~~~~~~-~~~~~~v~~~a~~~~~~~~~aA~~~a~~r~~ 199 (200)
T cd01075 145 GLINVADELYGGN------EARVLAKVEAI-YDTLLEIFAQAKQDGITTLEAADRMAEERIA 199 (200)
T ss_pred CceeehhHHhCCc------HHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 9999999999863 67899999986 8899999999999999999999999999985
No 15
>smart00839 ELFV_dehydrog Glutamate/Leucine/Phenylalanine/Valine dehydrogenase. Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction.
Probab=99.97 E-value=6.5e-31 Score=222.25 Aligned_cols=100 Identities=43% Similarity=0.675 Sum_probs=96.2
Q ss_pred cceeeeccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhccccCCCHHH
Q 014463 296 CDVLVPCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQGFMWEEEK 375 (424)
Q Consensus 296 ~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~~~~w~~e~ 375 (424)
||||+|||++++||++|+++++||+|+||||+|+|++++++|++|||+|+||+++|+|||++||+||.|+.++ ++++
T Consensus 3 ~DI~~PcA~~~~I~~~~a~~l~a~~V~egAN~~~t~~a~~~L~~rGi~~~PD~~~NaGGvi~s~~E~~~~~~~---~~e~ 79 (102)
T smart00839 3 CDIFIPCALQNVINEANANRLGAKIIAEGANMPLTDEADDILEDRGVLYAPDFAANAGGVIVSALEMLQNLAR---TAEE 79 (102)
T ss_pred cCEEEeCCCcCcCCHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCCEEcCcceecCCCEEeehhhhhcccCC---CHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998874 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q 014463 376 VNHELKRYMMSAFKDIKTMCQTH 398 (424)
Q Consensus 376 v~~~l~~~m~~~~~~v~~~a~~~ 398 (424)
|..++.++|.+++.++++.++++
T Consensus 80 v~~~~~~~i~~~~~~v~~~a~~~ 102 (102)
T smart00839 80 VFTDLSEIMRNALEEIFETAQKY 102 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999998753
No 16
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.97 E-value=2.9e-29 Score=277.97 Aligned_cols=338 Identities=23% Similarity=0.269 Sum_probs=238.6
Q ss_pred CCChHHHHhhcC--CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCC-CCCCeeeecCCC---HHHHHHHHHHHHHHHh
Q 014463 19 GLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGP-MKGGIRYHPEVD---PDEVNALAQLMTWKTA 92 (424)
Q Consensus 19 ~~~~~~~~~l~~--p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GP-akGGiR~~~~~t---~~ev~~LA~~Mt~K~A 92 (424)
++||..++-|.. |.++|.|.-| -|+|++. ..|| |+|||||+ +.. .+|++.|++.|+.||
T Consensus 760 K~dps~i~~lp~P~Py~eIFVyg~---------~vEGvHL----RFg~VARGGLRws-DR~~D~rtEvlgLvKAQqvKN- 824 (1592)
T COG2902 760 KFDPSLIDELPYPRPYREIFVYGP---------EVEGVHL----RFGPVARGGLRWS-DRNQDFRTEVLGLVKAQQVKN- 824 (1592)
T ss_pred EeChhhcCCCCCCCcceEEEEEcC---------cceEEEe----ecccccccccccc-ccchhHHHHHHHHHHHHHhcC-
Confidence 577887776664 7788877744 3688544 4566 99999998 444 569999999999999
Q ss_pred hcCCCCCCceeEEecCC--CCCCHHHH----HHHHHHHHHHHhhcc-----C----C------CCc----cccCCCCCCH
Q 014463 93 VAAIPYGGAKGGIGCNP--RELSMSEL----ERLTRVFTQKIHDLI-----G----I------HRD----VPAPDMGTNS 147 (424)
Q Consensus 93 l~~lp~GGaKggI~~dP--~~~s~~e~----e~~~r~~~~~l~~~i-----G----~------~~d----i~apDvgt~~ 147 (424)
+.||-+|||||+.+.+ ..-+.+|+ ...++.|++.|.+++ + | +.| +.|||-||..
T Consensus 825 -avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTAt 903 (1592)
T COG2902 825 -AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTAT 903 (1592)
T ss_pred -CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCccc
Confidence 4588899999998764 34466554 234567777665431 1 1 111 5699999951
Q ss_pred HHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeE
Q 014463 148 QTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKF 223 (424)
Q Consensus 148 ~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~v 223 (424)
--+| +...++.+|+ +-|+.. ..|||.|.+ +.|++|++++++..++++|.+++...|
T Consensus 904 -FsD~-AN~vA~~~~f----wl~DAF--------------aSGgS~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~f 963 (1592)
T COG2902 904 -FSDI-ANSVAREYGF----WLGDAF--------------ASGGSAGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPF 963 (1592)
T ss_pred -HHHH-HHHHHHHhCC----Chhhhh--------------hcCCCCCCCccccccchhhHHHHHHHHHHHhcccCCCCce
Confidence 2222 2223344444 444444 455555543 599999999999999999999999999
Q ss_pred EEEecChHHHHHH--HHHHHCCCEEEEEEcCCCceeCC-CCCCHHHHHH---HHHhcCCcccCCC------Ce-------
Q 014463 224 AIQGFGNVGSWAA--KFFHEHGGKVVAVSDITGAIKNP-NGIDVPALLK---YKKSNKSLNDFQG------GN------- 284 (424)
Q Consensus 224 aIqGfGnVG~~~a--~~L~~~GakVVaVsD~~G~i~~~-~GlDi~~L~~---~~~~~g~v~~~~~------~~------- 284 (424)
.+.|.|.+.+-+. .+|..+-.+.||+.|+++.++|| -++|...+.+ +...+.++.+|.. +.
T Consensus 964 TvvgiGdmsGDVfgNgMLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR~RlF~lpRSsw~DYD~s~iS~gG~v~srs~K 1043 (1592)
T COG2902 964 TVVGIGDMSGDVFGNGMLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAERKRLFALPRSSWSDYDASKISKGGGVVSRSAK 1043 (1592)
T ss_pred EEEeeCCCCccccccceeccccceeeEEecCCceeeCCCCCccccHHHHHHHhcCCcCchhhcchhhcCCCCeEEEeecc
Confidence 9988654443333 56777778899999999999999 5788777766 4445567777741 11
Q ss_pred -----------------eecCCc----cccccc--------ceeeecccc-Cccccccc--------ccccceEEEecCC
Q 014463 285 -----------------AMDLND----LLVHEC--------DVLVPCALG-GVLNKENA--------ADVKAKFIIEAAN 326 (424)
Q Consensus 285 -----------------~i~~~~----ll~~~~--------DIliPaA~~-~~It~~na--------~~i~akiIvEgAN 326 (424)
.++|.+ +|..++ |.+|||..+ |.++.+|| .+++||+|+||||
T Consensus 1044 ~I~Lspe~~~~lgi~~~~~~P~elitAILKapvDLLw~GGIgTYVka~~etnA~vgDrANd~irv~g~e~raKvIgEGaN 1123 (1592)
T COG2902 1044 AITLSPEVIAALGIDKTELAPNELITAILKAPVDLLWNGGIGTYVKASGETNADVGDRANDAIRVNGEEVRAKVIGEGAN 1123 (1592)
T ss_pred ccCCCHHHHHHhCCCccccChHHHHHHHHcCchhhhccCCCceeEecCCCccchhhcccchhhccccceeceeEEeeccc
Confidence 122232 345444 556677763 44555544 3579999999999
Q ss_pred CCCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhcc------ccCCCHHHHHHHHHHHHHHHHHHHHH
Q 014463 327 HPTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNIQ------GFMWEEEKVNHELKRYMMSAFKDIKT 393 (424)
Q Consensus 327 ~p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~~------~~~w~~e~v~~~l~~~m~~~~~~v~~ 393 (424)
..+|+.++-.|.++|..+..|++.|+|||.||..|..-.+. .-..+.++.+.-|++ |++.+.+++.
T Consensus 1124 LgvTQ~gRief~~~Ggr~ntDaidNsaGVd~SD~EVniKIal~~a~~~g~l~~~~Rn~Llas-mtdeV~~lVl 1195 (1592)
T COG2902 1124 LGVTQRGRIEFALAGGRINTDAIDNSAGVDCSDHEVNIKIALNSAVFAGKLTRGERNALLAS-MTDEVASLVL 1195 (1592)
T ss_pred ccccchhHHHHHHcCCeecchhhcccCCCcccchhhhhHHhhhhhhhcCCcchhhHHHHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999864321 224566777777776 7777766553
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.96 E-value=3.6e-28 Score=278.92 Aligned_cols=368 Identities=23% Similarity=0.248 Sum_probs=268.4
Q ss_pred CCChHHHHhhcC--CCeEEEEEEEEEcCCCCeEEEEEEEEeecCCCCCCCCCeeeecCC--CHHHHHHHHHHHHHHHhhc
Q 014463 19 GLDSKLERSLLI--PFREIKVECSIPKDDGSLATFVGFRIQHDNARGPMKGGIRYHPEV--DPDEVNALAQLMTWKTAVA 94 (424)
Q Consensus 19 ~~~~~~~~~l~~--p~r~~~~~~p~~~d~g~~~~~~Gyrv~h~~~~GPakGGiR~~~~~--t~~ev~~LA~~Mt~K~Al~ 94 (424)
+++|..+..+.. |.++|.|.-| -|+|++...... |+|||||+... -..||+.|+++|+.|| +
T Consensus 698 Kldp~~l~~~p~P~P~~eifV~s~---------~~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--a 763 (1528)
T PF05088_consen 698 KLDPSFLPDLPEPRPYFEIFVYSP---------RFEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--A 763 (1528)
T ss_pred EEcHHHcCCCCCCCCcEEEEEECC---------ceEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--C
Confidence 466777666654 6666666544 368977766553 99999996432 2579999999999999 5
Q ss_pred CCCCCCceeEEecCCCCC--CHH----HHHHHHHHHHHHHhhc---------cCCC------Cc----cccCCCCCCHHH
Q 014463 95 AIPYGGAKGGIGCNPREL--SMS----ELERLTRVFTQKIHDL---------IGIH------RD----VPAPDMGTNSQT 149 (424)
Q Consensus 95 ~lp~GGaKggI~~dP~~~--s~~----e~e~~~r~~~~~l~~~---------iG~~------~d----i~apDvgt~~~~ 149 (424)
.||-||||||++++.... +.. |-...++.|++.|.++ +.|. .| |.|.|-||. .
T Consensus 764 vIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA--t 841 (1528)
T PF05088_consen 764 VIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA--T 841 (1528)
T ss_pred cccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc--h
Confidence 689999999999865432 333 3345667777777665 2221 11 669999994 4
Q ss_pred HHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCCCCCC----chhHHHHHHHHHHHHHHhCCCCCCCeEEE
Q 014463 150 MAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGSLGRE----AATGLGVFFATEALLAEHGKSISNMKFAI 225 (424)
Q Consensus 150 m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs~gr~----~aTg~Gv~~~~~~~~~~~g~~l~g~~vaI 225 (424)
+.=++.+.+.-+| ++.|+.. .+|||.|++ +.|++|.|.+++..++++|++++...|.|
T Consensus 842 fSD~AN~ia~~~g----fWLgDAF--------------ASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTv 903 (1528)
T PF05088_consen 842 FSDIANEIAAEYG----FWLGDAF--------------ASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTV 903 (1528)
T ss_pred HHHHHHHHHHHcC----CCcchhh--------------hcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEE
Confidence 5555555555454 5777777 889998886 69999999999999999999999999999
Q ss_pred EecChHHHHHH--HHHHHCCCEEEEEEcCCCceeCCCCCCHHHH----HHHHHh-cCCcccCCC----------------
Q 014463 226 QGFGNVGSWAA--KFFHEHGGKVVAVSDITGAIKNPNGIDVPAL----LKYKKS-NKSLNDFQG---------------- 282 (424)
Q Consensus 226 qGfGnVG~~~a--~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L----~~~~~~-~g~v~~~~~---------------- 282 (424)
.|.|.+++-+. -+|..+-.|+||..|+.....||+. |++.= .++++- +-++.+|..
T Consensus 904 vGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~~Sf~ER~RLF~lprSsW~DYd~~lIS~GGGVf~R~aKs 982 (1528)
T PF05088_consen 904 VGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPAASFAERKRLFELPRSSWADYDKSLISKGGGVFSRSAKS 982 (1528)
T ss_pred EEecCCCccccccchhcccceeEEEecCcceeecCcCC-ChhhhHHHHHHHhcCCCCChhhcCHHHhCCCCceeecccCC
Confidence 99999988888 5888889999999999999999997 54432 222332 236777641
Q ss_pred --------------CeeecCCc----ccccccceeeeccccCcc---ccc--------------ccccccceEEEecCCC
Q 014463 283 --------------GNAMDLND----LLVHECDVLVPCALGGVL---NKE--------------NAADVKAKFIIEAANH 327 (424)
Q Consensus 283 --------------~~~i~~~~----ll~~~~DIliPaA~~~~I---t~~--------------na~~i~akiIvEgAN~ 327 (424)
...++|+| +|.+++|+|+-..+|..| ++. |+..++||+|+||+|.
T Consensus 983 I~lS~e~r~~lgi~~~~~tp~eLi~aiL~apVDLlwnGGIGTYVKas~Es~~~vgDkaND~vRV~g~~lrakVvgEGgNL 1062 (1528)
T PF05088_consen 983 IPLSPEMRAALGIEKDSLTPDELIRAILKAPVDLLWNGGIGTYVKASTESHADVGDKANDAVRVNGSELRAKVVGEGGNL 1062 (1528)
T ss_pred CCCCHHHHHHhCCCCCccCHHHHHHHHhcCccceEecCCccceEecCCCcccccccccCcceeechHHceEEEEeccccc
Confidence 11334444 578999999999999988 333 4556899999999999
Q ss_pred CCCHHHHHHHHhCCceEeccccccccCcchhhHHHhhhc------cccCCCHHHHHHHHHHHHHHHHHHHH-HHH--HHc
Q 014463 328 PTDPEADEILSKKGVVILPDIYANSGGVTVSYFEWVQNI------QGFMWEEEKVNHELKRYMMSAFKDIK-TMC--QTH 398 (424)
Q Consensus 328 p~t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~qn~------~~~~w~~e~v~~~l~~~m~~~~~~v~-~~a--~~~ 398 (424)
.+|+.++-.+..+|..+.-|++-||+||-||-.|..-.+ ..-..+.++-++.|++ |++.+.++. .-. +..
T Consensus 1063 G~TQ~gRiE~a~~GGriNtDaiDNSaGVd~SDhEVNiKIll~~~~~~g~lt~~~Rn~lL~~-mtdeV~~lVL~~N~~Q~~ 1141 (1528)
T PF05088_consen 1063 GLTQRGRIEYALNGGRINTDAIDNSAGVDCSDHEVNIKILLNSLVRAGDLTRKERNKLLAS-MTDEVAELVLRDNYRQTL 1141 (1528)
T ss_pred ccchHHHHHHHHcCCccchhhhcccCCCcCccchhhHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999974211 1224577888887877 676665533 221 111
Q ss_pred CC---CHHHHHHHHHHHHHHHHHHHcC
Q 014463 399 NC---NLRMGAFTLGVNRVAQATLLRG 422 (424)
Q Consensus 399 ~~---~~r~aA~~~A~~rv~~a~~~rg 422 (424)
-+ ..+.+.+.--..|+.+.++.+|
T Consensus 1142 alsl~~~~~~~~~~~~~r~~~~Le~~g 1168 (1528)
T PF05088_consen 1142 ALSLAERRAAERLEEHQRLIERLEREG 1168 (1528)
T ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcC
Confidence 12 2233344555667777776665
No 18
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.31 E-value=3.1e-12 Score=129.63 Aligned_cols=171 Identities=22% Similarity=0.306 Sum_probs=115.5
Q ss_pred CeEEEEecChHHHHHHHHHHH--------CC--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC---Ceeec
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE--------HG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG---GNAMD 287 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~--------~G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~---~~~i~ 287 (424)
.+|+||||||||++++++|.+ .| .+|++|+|+++++|||+|+|++++++++++++++..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 589999999999999999976 45 799999999999999999999999999999988887752 22345
Q ss_pred CCccc-ccccceeeeccccCcccccccccccceEEEecCCCC------C--C-HHHHHHHHhCCceEecccccccc-Cc-
Q 014463 288 LNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHP------T--D-PEADEILSKKGVVILPDIYANSG-GV- 355 (424)
Q Consensus 288 ~~~ll-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p------~--t-~eA~~iL~~rGI~viPD~laNaG-GV- 355 (424)
.++++ ..+|||+|.|. +.+++..+.++++.+|-+.- + + ++..++.+++|+.+.-. +|.+ |+
T Consensus 83 ~~ell~~~~~DVvVd~t-----~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~e--a~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEIDADIVVDVT-----NDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFE--ATVMAGTP 155 (336)
T ss_pred HHHHHhcCCCCEEEECC-----CcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEe--ccccccCC
Confidence 66777 58999999775 34567666555555554432 1 1 23344566788877633 3333 33
Q ss_pred chhhH-HHh-----hhcccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 356 TVSYF-EWV-----QNIQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 356 i~s~~-E~~-----qn~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
+.+.+ +.+ +.+++. .=+-.-+..++++ ...|.+++..|++.|.
T Consensus 156 ii~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~--g~~f~eal~eAq~~Gy 205 (336)
T PRK08374 156 IIGLLRENLLGDTVKRIEAVVNATTTFILTRMEQ--GKTFEEALKEAQTLGI 205 (336)
T ss_pred chHHHHhhccccceEEEEEEEechHHHHHHHhhC--CCCHHHHHHHHHHcCC
Confidence 22222 111 000110 1123345666653 5678999999998876
No 19
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.09 E-value=1.7e-10 Score=116.42 Aligned_cols=83 Identities=25% Similarity=0.457 Sum_probs=68.7
Q ss_pred CeEEEEecChHHHHHHHHHHH--------CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE--------HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL 292 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~--------~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll 292 (424)
++|+|||||+||+.++++|.+ .+.+||+|+|+++++|||+|||++++++++++ +++..++ .+.++.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence 379999999999999999987 36899999999999999999999999998876 6665553 1223456677
Q ss_pred ccccceeeecccc
Q 014463 293 VHECDVLVPCALG 305 (424)
Q Consensus 293 ~~~~DIliPaA~~ 305 (424)
..++||+|+|+-.
T Consensus 79 ~~~~DVvVE~t~~ 91 (326)
T PRK06392 79 EIKPDVIVDVTPA 91 (326)
T ss_pred cCCCCEEEECCCC
Confidence 7899999999753
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.79 E-value=3.3e-08 Score=100.56 Aligned_cols=177 Identities=23% Similarity=0.333 Sum_probs=110.9
Q ss_pred CeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-eecCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-AMDLN 289 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-~i~~~ 289 (424)
.+|+|+|+|+||+.+++.|.+. +.+|++|+|+++.+|+++|+|++++.++.+..+.+..|++.. ..+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 589999999999999999999999999888777666665332 12445
Q ss_pred ccc-ccccceeeeccccCcccccccc----c-c--cceEEEecCC-CCC---CHHHHHHHHhCCceEeccccccccCcch
Q 014463 290 DLL-VHECDVLVPCALGGVLNKENAA----D-V--KAKFIIEAAN-HPT---DPEADEILSKKGVVILPDIYANSGGVTV 357 (424)
Q Consensus 290 ~ll-~~~~DIliPaA~~~~It~~na~----~-i--~akiIvEgAN-~p~---t~eA~~iL~~rGI~viPD~laNaGGVi~ 357 (424)
+++ +.++||+|.|...+.-+.+.+. . + +..+|++ | .|+ -++-.+..+++|+.+.-.-...+|=-+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta--NK~pla~~~~eL~~~A~~~g~~~~~ea~v~~glPii 160 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS--NKGPLALAYKELKELAKKNGVRFRYEATVGGAMPII 160 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC--CcHHHHhhHHHHHHHHHHcCCEEEEeeeeeechhHH
Confidence 666 4679999999765433222211 1 2 3445553 3 343 2444556678888776332222222222
Q ss_pred hhH-HHhhh-----ccc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 358 SYF-EWVQN-----IQG-FMWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 358 s~~-E~~qn-----~~~-~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
..+ +.+.. +++ +.=+-.-+..++++. ...|.+++..|++.|.
T Consensus 161 ~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~G~ 209 (341)
T PRK06270 161 NLAKETLAGNDIKSIKGILNGTTNYILTRMEEE-GLSYEQALAEAQELGY 209 (341)
T ss_pred HHHHhhcccCceEEEEEEEeCcHHHHHHHHhhc-CCCHHHHHHHHHHcCC
Confidence 221 22110 000 011223455555321 4678999999998886
No 21
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.69 E-value=1.4e-07 Score=76.95 Aligned_cols=84 Identities=31% Similarity=0.370 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
+||+|++..++...+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------
Confidence 4899999999999888888899999999999999999999999986555557766
Q ss_pred ccCCCCeeecCCcccccccceeeeccccCccccc--ccccccceEEEecC
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKE--NAADVKAKFIIEAA 325 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~--na~~i~akiIvEgA 325 (424)
|++|+|...+.+..+ +....+..+|++.|
T Consensus 56 -------------------di~i~~~~~~~~~~~~~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 -------------------DILVTATPAGVPVLEEATAKINEGAVVIDLA 86 (86)
T ss_pred -------------------CEEEEcCCCCCCchHHHHHhcCCCCEEEecC
Confidence 999999987766655 56666777887764
No 22
>PLN02700 homoserine dehydrogenase family protein
Probab=98.21 E-value=3.8e-06 Score=86.41 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=47.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHC-------C--CEEEEEEcCCCceeCCC----CCCHHHHHH---HHHhcCCcccC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEH-------G--GKVVAVSDITGAIKNPN----GIDVPALLK---YKKSNKSLNDF 280 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~-------G--akVVaVsD~~G~i~~~~----GlDi~~L~~---~~~~~g~v~~~ 280 (424)
-.+|+|.|+|+||+.+++.|.++ | .+|++|+|+++.++|++ |||++.+.+ .+.+...+..|
T Consensus 3 ~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~ 79 (377)
T PLN02700 3 KIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL 79 (377)
T ss_pred EEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence 45789999999999999987542 3 58999999999999965 999888766 33444444444
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.02 E-value=2.1e-05 Score=80.33 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=56.3
Q ss_pred CeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND 290 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ 290 (424)
.+|+|.|||+||+.++++|.++ ..+|++|+|+++.+++++|+|++.+++.......+..|. ....++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~ 79 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE 79 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence 5899999999999999998653 258999999999999999999988665432211111211 011222
Q ss_pred cc--ccccceeeeccc
Q 014463 291 LL--VHECDVLVPCAL 304 (424)
Q Consensus 291 ll--~~~~DIliPaA~ 304 (424)
++ ..++||+|.|.-
T Consensus 80 ~~~~~~~~dVvVe~T~ 95 (346)
T PRK06813 80 RATDNISGTVLVESTV 95 (346)
T ss_pred HhcCCCCCCEEEECCC
Confidence 22 236899998853
No 24
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.97 E-value=3e-05 Score=78.44 Aligned_cols=78 Identities=27% Similarity=0.380 Sum_probs=55.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL 288 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~ 288 (424)
+-.+|+|.|||+||+.++++|.++ ..+|++|+|+++..+. ++|...+ +.+...+... .+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~ 71 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD 71 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence 346899999999999999999864 3699999999998775 4454443 3333222221 223
Q ss_pred CcccccccceeeeccccC
Q 014463 289 NDLLVHECDVLVPCALGG 306 (424)
Q Consensus 289 ~~ll~~~~DIliPaA~~~ 306 (424)
+.+...+.||++++...+
T Consensus 72 ~~~~~~~~dvvve~~~~d 89 (333)
T COG0460 72 EVLLDEDIDVVVELVGGD 89 (333)
T ss_pred hhhccccCCEEEecCccc
Confidence 445678899999997654
No 25
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.79 E-value=0.00015 Score=66.40 Aligned_cols=120 Identities=25% Similarity=0.374 Sum_probs=66.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 278 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~ 278 (424)
||.+++.++. +..+..+.|++++|.|||.||+.+|+.|+..|++|+ |+|.+- +..|.++. .
T Consensus 5 ~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~DP---------i~alqA~~------d 65 (162)
T PF00670_consen 5 TGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEIDP---------IRALQAAM------D 65 (162)
T ss_dssp HHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SSH---------HHHHHHHH------T
T ss_pred cchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECCh---------HHHHHhhh------c
Confidence 4555544443 345677999999999999999999999999999997 998841 33333322 2
Q ss_pred cCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCCCC-CCHHHH-HHHHhCCce
Q 014463 279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHP-TDPEAD-EILSKKGVV 343 (424)
Q Consensus 279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p-~t~eA~-~iL~~rGI~ 343 (424)
+| +..+-++.+ ..+||||-|.. .++|+.+-..+++=..|+ +|.. .+.|.+ +.|.+.++.
T Consensus 66 Gf---~v~~~~~a~-~~adi~vtaTG~~~vi~~e~~~~mkdgail--~n~Gh~d~Eid~~~L~~~~~~ 127 (162)
T PF00670_consen 66 GF---EVMTLEEAL-RDADIFVTATGNKDVITGEHFRQMKDGAIL--ANAGHFDVEIDVDALEANAVE 127 (162)
T ss_dssp T----EEE-HHHHT-TT-SEEEE-SSSSSSB-HHHHHHS-TTEEE--EESSSSTTSBTHHHHHTCTSE
T ss_pred Cc---EecCHHHHH-hhCCEEEECCCCccccCHHHHHHhcCCeEE--eccCcCceeEeeccccccCcE
Confidence 33 233333444 37899998765 356787777777554444 2222 233333 346666543
No 26
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.74 E-value=0.0009 Score=59.37 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=77.5
Q ss_pred HHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463 206 ATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 285 (424)
Q Consensus 206 ~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~ 285 (424)
+++.++++.+.+++++++.|.|.|.+|+.+++.|.+.|...|.+.|.+ .+.+.+..++.+.- .. ....
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~----------~~~~~~~~~~~~~~-~~-~~~~ 72 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT----------LEKAKALAERFGEL-GI-AIAY 72 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHhhc-cc-ceee
Confidence 445556666777889999999999999999999998874444477764 23333333321110 00 0011
Q ss_pred ecCCcccccccceeeeccccCcccccccc----cc-cceEEEecCCCCCCHHHHHHHHhCCceEecc
Q 014463 286 MDLNDLLVHECDVLVPCALGGVLNKENAA----DV-KAKFIIEAANHPTDPEADEILSKKGVVILPD 347 (424)
Q Consensus 286 i~~~~ll~~~~DIliPaA~~~~It~~na~----~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD 347 (424)
.+.+++ -.++|++|-|.-....+.++.. .+ .-++|++-+-.|...+..+.++++|+.++|.
T Consensus 73 ~~~~~~-~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g 138 (155)
T cd01065 73 LDLEEL-LAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDG 138 (155)
T ss_pred cchhhc-cccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCC
Confidence 122232 3579999998765554111111 11 3456777665554227778889999987764
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.65 E-value=0.00048 Score=68.65 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=83.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
..|+.+.+. .+++..+.++.|++|.|.|+|.+|+.+|+.|...|++|+ +.|.+. +++....+.
T Consensus 131 ~~~Ae~ai~---~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~~----------~~~~~~~~~--- 193 (287)
T TIGR02853 131 IPTAEGAIM---MAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARSS----------ADLARITEM--- 193 (287)
T ss_pred HhHHHHHHH---HHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCCH----------HHHHHHHHC---
Confidence 467776643 445556778999999999999999999999999999887 777642 222222211
Q ss_pred cccCCCCeeecCCcc--cccccceeeeccccCccccccccccc-ceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 014463 277 LNDFQGGNAMDLNDL--LVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-DPEADEILSKKGVVIL 345 (424)
Q Consensus 277 v~~~~~~~~i~~~~l--l~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-t~eA~~iL~~rGI~vi 345 (424)
+...++.+++ +-.++|++|-|.-...++.+..+.++ -.+|++-+..|- |+= +..+++|+..+
T Consensus 194 -----g~~~~~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf--~~Ak~~G~~a~ 259 (287)
T TIGR02853 194 -----GLIPFPLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF--EYAKKRGIKAL 259 (287)
T ss_pred -----CCeeecHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH--HHHHHCCCEEE
Confidence 1122222222 12489999988755566766665553 358888888884 443 56789998765
No 28
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.50 E-value=0.00026 Score=79.93 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=48.8
Q ss_pred HhCCCCCCCeEEEEecChHHHHHHHHHHHC---------CCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463 213 EHGKSISNMKFAIQGFGNVGSWAAKFFHEH---------GGKVVAVSDITGAIKNPNGIDVPALLKYKK 272 (424)
Q Consensus 213 ~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~ 272 (424)
.+-.+-+..+|+|.|||+||+.+++.|.++ ..+|++|+|+++.+++|+|+|...+.+...
T Consensus 458 ~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~ 526 (819)
T PRK09436 458 SFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELA 526 (819)
T ss_pred HHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHh
Confidence 333344678999999999999999998643 357999999999999999999887665444
No 29
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.43 E-value=0.0026 Score=63.46 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=95.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D 297 (424)
++|.|+|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +++++.+. ++|
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~~~~e~~~~~~~~d 61 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN----------PEAVEALAEE-G-------ATGADSLEELVAKLPAPR 61 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHhhcCCCC
Confidence 379999999999999999999999986 56664 2333333322 1 1111 23444432 367
Q ss_pred eeeeccccCccccccccc----c-cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcchhh-----------
Q 014463 298 VLVPCALGGVLNKENAAD----V-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTVSY----------- 359 (424)
Q Consensus 298 IliPaA~~~~It~~na~~----i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~laNaGGVi~s~----------- 359 (424)
+++-|.-.....++.+.. + .-++|+...+. | .+.+..+.++++|+.++ | ...+||+...-
T Consensus 62 vvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~-d-apvsG~~~~a~~g~~~~~gG~~ 139 (301)
T PRK09599 62 VVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV-D-VGTSGGVWGLERGYCLMIGGDK 139 (301)
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE-e-CCCCcCHHHHhcCCeEEecCCH
Confidence 766664433222222222 2 22577777665 4 35566688999999998 6 56666653211
Q ss_pred --HHHhhhc----cc-----cCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014463 360 --FEWVQNI----QG-----FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL 409 (424)
Q Consensus 360 --~E~~qn~----~~-----~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~ 409 (424)
||-++.+ .. ..+ .-+.+++-+.--+..++.|-+..+++ .|+++.+...++
T Consensus 140 ~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~ 210 (301)
T PRK09599 140 EAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVW 210 (301)
T ss_pred HHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2222111 00 000 01223333444445667788888888 888887766554
No 30
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.38 E-value=0.0056 Score=63.95 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC
Q 014463 202 GVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ 281 (424)
Q Consensus 202 Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~ 281 (424)
++..+.-+.++..-.+|++++|.|+|.|.+|.-+|+.|+++|.+-|.|+..+ .+...++.++-+
T Consensus 160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------ 223 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------ 223 (414)
T ss_pred chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence 3444444555544445999999999999999999999999998777799875 455555555543
Q ss_pred CCeeecCCccc--ccccceeeec--cccCcccccccccc-cc---eEEEecCCCCC-CHHHHHHHHhCCceEeccccccc
Q 014463 282 GGNAMDLNDLL--VHECDVLVPC--ALGGVLNKENAADV-KA---KFIIEAANHPT-DPEADEILSKKGVVILPDIYANS 352 (424)
Q Consensus 282 ~~~~i~~~~ll--~~~~DIliPa--A~~~~It~~na~~i-~a---kiIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNa 352 (424)
++.++-+++. -.++||+|-| |...+|+.++.... +. .+|++-||.+. .|+... | .||.+.
T Consensus 224 -~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~-l--~~v~l~------- 292 (414)
T COG0373 224 -AEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE-L--PNVFLY------- 292 (414)
T ss_pred -CeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC-c--CCeEEE-------
Confidence 3444445544 3589999998 56778898888764 22 39999999763 443210 1 111110
Q ss_pred cCcchhhHHHh--hhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014463 353 GGVTVSYFEWV--QNIQGFMWEEEKVNHELKRYMMSAFKDIKTMCQTHNCN 401 (424)
Q Consensus 353 GGVi~s~~E~~--qn~~~~~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~~ 401 (424)
.+..++-+ .|.. ..++...+.+.+|.+.+.+.++.-+...+.
T Consensus 293 ---~iDDL~~iv~~n~~----~R~~~~~~ae~iIeee~~~~~~~l~~~~~~ 336 (414)
T COG0373 293 ---TIDDLEEIVEENLE----ARKEEAAKAEAIIEEELAEFMEWLKKLEVV 336 (414)
T ss_pred ---ehhhHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 01111111 1111 123445556667777777777777666653
No 31
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.28 E-value=0.001 Score=70.46 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=68.6
Q ss_pred HHHHHHHH-HHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463 200 GLGVFFAT-EALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 278 (424)
Q Consensus 200 g~Gv~~~~-~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~ 278 (424)
.+|...++ ...++..+..+.|++|+|+|+|++|+.+|+.|...|++|+ ++|.+. .........
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~dp----------~~a~~A~~~----- 296 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEIDP----------ICALQAAME----- 296 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhHHHHHhc-----
Confidence 34444333 4455566788999999999999999999999999999987 666532 111111111
Q ss_pred cCCCCeeecCCcccccccceeeeccc-cCcccccccccccce-EEEecCCC
Q 014463 279 DFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAK-FIIEAANH 327 (424)
Q Consensus 279 ~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~ak-iIvEgAN~ 327 (424)
+.+..+-++++ ..+||++.|.. .+.|+.+....++-. +++..+-+
T Consensus 297 ---G~~~~~leell-~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 297 ---GYQVVTLEDVV-ETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ---CceeccHHHHH-hcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCC
Confidence 22233334444 37999999864 456777777666543 44444433
No 32
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.28 E-value=0.0021 Score=64.30 Aligned_cols=125 Identities=24% Similarity=0.311 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
.+|+.| ++..+++..+.++.+++|.|.|+|.+|+.++..|...|++|+ ++|.+ .+++.. .++.
T Consensus 132 ~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~----------~~~~~~-~~~~-- 194 (296)
T PRK08306 132 IPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK----------SAHLAR-ITEM-- 194 (296)
T ss_pred HhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHH-HHHc--
Confidence 467777 445566777788899999999999999999999999999877 66764 122222 1221
Q ss_pred cccCCCCeeecCCccc--ccccceeeeccccCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCceEe
Q 014463 277 LNDFQGGNAMDLNDLL--VHECDVLVPCALGGVLNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVIL 345 (424)
Q Consensus 277 v~~~~~~~~i~~~~ll--~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~vi 345 (424)
+.+.++.+++- -.++|++|-|.-...|+++-...+ +-.+|++-|..|- |.- +.-+++||.++
T Consensus 195 -----G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~ 260 (296)
T PRK08306 195 -----GLSPFHLSELAEEVGKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKAL 260 (296)
T ss_pred -----CCeeecHHHHHHHhCCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEE
Confidence 12222212211 137899998864445665544333 2235666665552 211 23456676654
No 33
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.27 E-value=0.00064 Score=76.67 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=97.1
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHC--------C--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEH--------G--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 286 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i 286 (424)
+.+..+++|.|||+||+.++++|.++ | .+|++|+|+++.+++++|+|...+.+...... ..++ ...+
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~--~~~~-~~~~ 531 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEA--VEWD-EESL 531 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhc--CCcc-HHHH
Confidence 34567899999999999999998643 3 68899999999999999999887766544321 1111 0000
Q ss_pred cCCccc--ccccceeeeccccCcccccccccccceEEEecCCCCC-C------HHHHHHHHhCCceEeccccccccCcch
Q 014463 287 DLNDLL--VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-D------PEADEILSKKGVVILPDIYANSGGVTV 357 (424)
Q Consensus 287 ~~~~ll--~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t------~eA~~iL~~rGI~viPD~laNaGGVi~ 357 (424)
.+.+. ..+.+|+|.|.-+..+...-..-+++..=|=-||-.. + ++-.+..+++|+.+...-...+|=-+.
T Consensus 532 -~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii 610 (810)
T PRK09466 532 -FLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPIN 610 (810)
T ss_pred -HHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChH
Confidence 01111 2234689988754433222222344444444566631 1 122344567888777554333222221
Q ss_pred hhHHHhhh-------cccc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 358 SYFEWVQN-------IQGF-MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 358 s~~E~~qn-------~~~~-~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
.-+.-+.+ +++. .=+-.-+.+++++ ...|.+++..|++.|.
T Consensus 611 ~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~--g~~f~eal~~Aq~~Gy 659 (810)
T PRK09466 611 HTVRDLRNSGDSILAISGIFSGTLSWLFLQFDG--SVPFSELVDQAWQQGL 659 (810)
T ss_pred HHHHHHHhccCcEEEEEEEEccHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 11111110 0000 0011223343333 4577888888888775
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.26 E-value=0.0008 Score=70.60 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 275 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g 275 (424)
...||.|++.+++.+. +..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+. ....+....
T Consensus 191 ~~gt~~s~~~ai~rat---~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~dp----------~ra~~A~~~-- 254 (425)
T PRK05476 191 RYGTGESLLDGIKRAT---NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVDP----------ICALQAAMD-- 254 (425)
T ss_pred cHHHHhhhHHHHHHhc---cCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCCc----------hhhHHHHhc--
Confidence 3568888877765442 556899999999999999999999999999987 777642 122111111
Q ss_pred CcccCCCCeeecCCcccccccceeeeccc-cCcccccccccc
Q 014463 276 SLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV 316 (424)
Q Consensus 276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i 316 (424)
+.+.++.++++. .+||+|+|.- .+.|+.+....+
T Consensus 255 ------G~~v~~l~eal~-~aDVVI~aTG~~~vI~~~~~~~m 289 (425)
T PRK05476 255 ------GFRVMTMEEAAE-LGDIFVTATGNKDVITAEHMEAM 289 (425)
T ss_pred ------CCEecCHHHHHh-CCCEEEECCCCHHHHHHHHHhcC
Confidence 112222234443 7999999963 346766555554
No 35
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.14 E-value=0.011 Score=61.15 Aligned_cols=131 Identities=22% Similarity=0.261 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
+.+-=++..+-.+.+..|.+++|+||.|+|+|++|+.+|+.|...|.+|++ .|.... +. +.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp~~~---~~--------------~~- 154 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDPPRA---DR--------------GD- 154 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECCccc---cc--------------cc-
Confidence 444444455555566678889999999999999999999999999999984 453210 00 00
Q ss_pred ccCCCCeeecCCcccccccceeeeccc---------cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-E
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCAL---------GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-I 344 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~---------~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-v 344 (424)
.....+-++++ .+|||++-+.- .+-|+++....++ -.+++..+=+++ +.+|- +.|++.-+. .
T Consensus 155 ----~~~~~~L~ell-~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga 229 (378)
T PRK15438 155 ----EGDFRSLDELV-QEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSV 229 (378)
T ss_pred ----ccccCCHHHHH-hhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEE
Confidence 00112334555 35888884432 2346666666664 458888888885 55554 567666553 4
Q ss_pred eccccccc
Q 014463 345 LPDIYANS 352 (424)
Q Consensus 345 iPD~laNa 352 (424)
+=|..-+=
T Consensus 230 ~LDV~e~E 237 (378)
T PRK15438 230 VLDVWEGE 237 (378)
T ss_pred EEecCCCC
Confidence 45554443
No 36
>PRK13529 malate dehydrogenase; Provisional
Probab=97.10 E-value=0.018 Score=62.10 Aligned_cols=183 Identities=17% Similarity=0.236 Sum_probs=121.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463 112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG 191 (424)
Q Consensus 112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG 191 (424)
++..|-..|...|++++.... |..-|--.|++... ---|.+.|+... | ++. +
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~i---~-~Fn-D-------------------- 269 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKN--ARRILERYRDEI---C-TFN-D-------------------- 269 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCch--HHHHHHHhccCC---C-eec-c--------------------
Confidence 355677888999999998877 55456677887642 234556665311 1 111 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH----CCC-------EEEEEEcCCCceeCCC
Q 014463 192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE----HGG-------KVVAVSDITGAIKNPN 260 (424)
Q Consensus 192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~Ga-------kVVaVsD~~G~i~~~~ 260 (424)
.-.-||-=+..++..+++..|.++++.||++.|.|..|-.+|++|.+ .|. ++. +.|++|-+++..
T Consensus 270 ---DiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r 345 (563)
T PRK13529 270 ---DIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDM 345 (563)
T ss_pred ---ccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCC
Confidence 11467877788888899988999999999999999999999999875 686 555 899999999766
Q ss_pred CCCHHHHHH-HHHhcCCcccCCCCe-eecCCc-ccccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463 261 GIDVPALLK-YKKSNKSLNDFQGGN-AMDLND-LLVHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH 327 (424)
Q Consensus 261 GlDi~~L~~-~~~~~g~v~~~~~~~-~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~ 327 (424)
+ |+..-.. +.+....+..++... ..+-.+ +-.++.||||=++. ++.+|++-++... =.||---+|-
T Consensus 346 ~-~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 419 (563)
T PRK13529 346 P-DLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP 419 (563)
T ss_pred C-cchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 4 3322222 222211222121100 011122 33567899998886 7999999887753 3688888874
No 37
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.04 E-value=0.0022 Score=58.26 Aligned_cols=110 Identities=27% Similarity=0.318 Sum_probs=67.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli 300 (424)
++|.++|+|++|+.+|+.|.++|..|. +.|.+ .+++.+..+.. .+..++-+=+...||+++
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~~----------~~~~~~~~~~g--------~~~~~s~~e~~~~~dvvi 62 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDRS----------PEKAEALAEAG--------AEVADSPAEAAEQADVVI 62 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEESS----------HHHHHHHHHTT--------EEEESSHHHHHHHBSEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eeccc----------hhhhhhhHHhh--------hhhhhhhhhHhhcccceE
Confidence 589999999999999999999999987 55642 45555555442 233322222345679988
Q ss_pred eccccCc-----ccccc-cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccc
Q 014463 301 PCALGGV-----LNKEN-AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY 349 (424)
Q Consensus 301 PaA~~~~-----It~~n-a~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~l 349 (424)
-|-.... +..++ +..+ +-++|++..+.. .+.+..+.+.++|+.++=--+
T Consensus 63 ~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 63 LCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp E-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred eecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 8754432 22222 2222 567888888764 355667789999998874433
No 38
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.03 E-value=0.0065 Score=58.49 Aligned_cols=136 Identities=24% Similarity=0.288 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE--EEEEEcCCCceeCCCCCCHHHH-HHHHHhcC
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK--VVAVSDITGAIKNPNGIDVPAL-LKYKKSNK 275 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak--VVaVsD~~G~i~~~~GlDi~~L-~~~~~~~g 275 (424)
|+-=+..++..+++..|.+++++||.|.|.|.+|..+++.|.+.|.+ -+-+.|++|-++....-++..- .++.+..+
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~ 83 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETN 83 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhc
Confidence 44444455566677778889999999999999999999999999987 5669999987765443111111 22222211
Q ss_pred CcccCCCCeeecCCcccccccceeeeccccCcccccccccc-cceEEEecCCCCC-CHHHHHHHHhCCc
Q 014463 276 SLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADV-KAKFIIEAANHPT-DPEADEILSKKGV 342 (424)
Q Consensus 276 ~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI 342 (424)
. .. . ..+-.+.+. ++|++|=|.-.+.++++-++.+ +-.+|..-. +|+ |+-. +..++.|.
T Consensus 84 ~-~~---~-~~~l~~~l~-~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls-nP~~e~~~-~~A~~~ga 144 (226)
T cd05311 84 P-EK---T-GGTLKEALK-GADVFIGVSRPGVVKKEMIKKMAKDPIVFALA-NPVPEIWP-EEAKEAGA 144 (226)
T ss_pred c-Cc---c-cCCHHHHHh-cCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC-CCCCcCCH-HHHHHcCC
Confidence 0 00 0 011112232 5899999988888887766655 334677666 564 3322 23344566
No 39
>PRK12861 malic enzyme; Reviewed
Probab=96.98 E-value=0.014 Score=65.30 Aligned_cols=124 Identities=27% Similarity=0.320 Sum_probs=90.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK 271 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~ 271 (424)
.-||-=+..++..+++..|++++..||++.|.|..|..++++|.+.|. +|+ ++|++|.++... .++..+. .+.
T Consensus 166 qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a 243 (764)
T PRK12861 166 HGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFA 243 (764)
T ss_pred chHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHH
Confidence 357777778888889988999999999999999999999999999998 566 999999999754 2443222 122
Q ss_pred HhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCCC--CCHH
Q 014463 272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHP--TDPE 332 (424)
Q Consensus 272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p--~t~e 332 (424)
+.+ + ..+-.|.+.. +||||=+..++.+|++-++.... .+|---||-- +|||
T Consensus 244 ~~~----~-----~~~L~eai~~-advliG~S~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe 297 (764)
T PRK12861 244 QET----D-----ARTLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAARPLILALANPTPEIFPE 297 (764)
T ss_pred hhc----C-----CCCHHHHHhc-CCEEEEcCCCCCCCHHHHHHhccCCEEEECCCCCccCCHH
Confidence 221 1 0122334443 69999998899999998887633 5777778742 3554
No 40
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.96 E-value=0.0058 Score=63.49 Aligned_cols=124 Identities=24% Similarity=0.311 Sum_probs=90.3
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCE---EEEEEcCCCceeCCC-CCCH-HHHHHHH
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGK---VVAVSDITGAIKNPN-GIDV-PALLKYK 271 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Gak---VVaVsD~~G~i~~~~-GlDi-~~L~~~~ 271 (424)
.-||-=+..++-.+|+..|++++..+|++.|.|..|-.++++|...|.+ |+ ++|++|-+|+.- -++. +...++.
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~-~~D~~G~l~~~r~~~~~~~~k~~~a 254 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIF-VVDRKGLLYDGREDLTMNQKKYAKA 254 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEE-EEecCCcccCCCcccccchHHHHHH
Confidence 3688778888888999999999999999999999999999999999984 55 899999999632 2211 1112222
Q ss_pred -HhcCCcccCCCCeeecCCcccccccceeeeccccCcccccccccccc-eEEEecCCCCCCHHH
Q 014463 272 -KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVKA-KFIIEAANHPTDPEA 333 (424)
Q Consensus 272 -~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~a-kiIvEgAN~p~t~eA 333 (424)
+.++... + +.--..+||||=|...+.+|++-++.... .+|---|| |+ ||+
T Consensus 255 ~~~~~~~~--------~--~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~PiIfalaN-P~-pEi 306 (432)
T COG0281 255 IEDTGERT--------L--DLALAGADVLIGVSGVGAFTEEMVKEMAKHPIIFALAN-PT-PEI 306 (432)
T ss_pred Hhhhcccc--------c--cccccCCCEEEEcCCCCCcCHHHHHHhccCCEEeecCC-CC-ccC
Confidence 1211111 1 22456899999999999999998887643 57777777 44 444
No 41
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0083 Score=59.90 Aligned_cols=94 Identities=19% Similarity=0.328 Sum_probs=69.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..|++.. +++++.+++|++|+|.|.|+ ||..++.+|.++|++|+ +++++. ..|.+
T Consensus 138 ~PcTp~ai~~l----l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~t----------~~l~~----- 197 (286)
T PRK14175 138 VPCTPLGIMEI----LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSRS----------KDMAS----- 197 (286)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCCc----------hhHHH-----
Confidence 47899888766 45678899999999999988 99999999999999988 777642 01111
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCCCC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAANHP 328 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN~p 328 (424)
...++||+|-|.. .+.|+++..+. -.+|++.+.++
T Consensus 198 -----------------~~~~ADIVIsAvg~p~~i~~~~vk~--gavVIDvGi~~ 233 (286)
T PRK14175 198 -----------------YLKDADVIVSAVGKPGLVTKDVVKE--GAVIIDVGNTP 233 (286)
T ss_pred -----------------HHhhCCEEEECCCCCcccCHHHcCC--CcEEEEcCCCc
Confidence 2347888888875 44677766543 35777777665
No 42
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=96.93 E-value=0.023 Score=61.60 Aligned_cols=178 Identities=17% Similarity=0.222 Sum_probs=121.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCC
Q 014463 112 LSMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGG 191 (424)
Q Consensus 112 ~s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GG 191 (424)
.+..|-..+...|++++..-.||..-|--.|++... ---+.+.|... + | ++. +
T Consensus 243 v~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~--af~iL~ryr~~--i-~-~Fn-D-------------------- 295 (581)
T PLN03129 243 LTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN--AFRLLQRYRTT--H-L-CFN-D-------------------- 295 (581)
T ss_pred CchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc--HHHHHHHhccC--C-C-Eec-c--------------------
Confidence 355667788999999999988886556678887653 22345666421 0 1 111 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-----CCC-------EEEEEEcCCCceeCC
Q 014463 192 SLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-----HGG-------KVVAVSDITGAIKNP 259 (424)
Q Consensus 192 s~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~Ga-------kVVaVsD~~G~i~~~ 259 (424)
.-..||--+..++..+++..|.+++..||++.|.|..|-.+|++|.+ .|. ++. +.|++|-+++.
T Consensus 296 ---DiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~-~vD~~GLi~~~ 371 (581)
T PLN03129 296 ---DIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIW-LVDSKGLVTKS 371 (581)
T ss_pred ---ccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEE-EEcCCCeEeCC
Confidence 11467877788888889988999999999999999999999999876 475 554 89999999976
Q ss_pred CCCCHHHHHHHHHhcCCcccCCCCeeecCCc-ccccccceeeeccc-cCcccccccccc----cceEEEecCCC
Q 014463 260 NGIDVPALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPCAL-GGVLNKENAADV----KAKFIIEAANH 327 (424)
Q Consensus 260 ~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i----~akiIvEgAN~ 327 (424)
..-++..-...+.+.. . ...+-.| +-.++.||||=++. ++.+|++-++.. +=.||---+|-
T Consensus 372 r~~~l~~~k~~fa~~~--~-----~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 372 RKDSLQPFKKPFAHDH--E-----PGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred CCccChHHHHHHHhhc--c-----cCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 5321222222222211 0 0111123 33568999998884 799999988776 45688888884
No 43
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.91 E-value=0.0031 Score=66.00 Aligned_cols=104 Identities=16% Similarity=0.279 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
.||.+++ ..+++..+..+.|++|+|+|+|.+|..+++.+...|++|+ |+|.+ ...+...+ +.
T Consensus 183 g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d----------~~R~~~A~-~~--- 244 (413)
T cd00401 183 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD----------PICALQAA-ME--- 244 (413)
T ss_pred hhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC----------hhhHHHHH-hc---
Confidence 4666654 4455666788999999999999999999999999999987 57763 22222222 11
Q ss_pred ccCCCCeeecCCcccccccceeeeccc-cCcccccccccc--cceEEEec
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV--KAKFIIEA 324 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i--~akiIvEg 324 (424)
+...++.++.+ ..+||+|.|.. ...|+..-.+.+ .+.+|.=|
T Consensus 245 ----G~~~~~~~e~v-~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 245 ----GYEVMTMEEAV-KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ----CCEEccHHHHH-cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 22222223433 36899999974 345665434333 44554333
No 44
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.89 E-value=0.016 Score=53.49 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=67.1
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463 194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK 272 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~ 272 (424)
...++|++.++.. ++....+++|++|.|.|.|. +|..++++|.++|++|+ +++++- +++.+
T Consensus 22 ~~~p~~~~a~v~l----~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~~----------~~l~~--- 83 (168)
T cd01080 22 GFIPCTPAGILEL----LKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSKT----------KNLKE--- 83 (168)
T ss_pred CccCChHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECCc----------hhHHH---
Confidence 3456787776664 44445679999999999998 58889999999999865 777641 11111
Q ss_pred hcCCcccCCCCeeecCCcccccccceeeecccc-CcccccccccccceEEEecCCCC
Q 014463 273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCALG-GVLNKENAADVKAKFIIEAANHP 328 (424)
Q Consensus 273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~-~~It~~na~~i~akiIvEgAN~p 328 (424)
.-.++||+|-|... +.|+.+..+. ..+|++-|..+
T Consensus 84 -------------------~l~~aDiVIsat~~~~ii~~~~~~~--~~viIDla~pr 119 (168)
T cd01080 84 -------------------HTKQADIVIVAVGKPGLVKGDMVKP--GAVVIDVGINR 119 (168)
T ss_pred -------------------HHhhCCEEEEcCCCCceecHHHccC--CeEEEEccCCC
Confidence 12368888888753 5677776543 47888888654
No 45
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.85 E-value=0.0033 Score=55.47 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=69.4
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--c
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V 293 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~ 293 (424)
.+++++++.|.|.|.+|+.++..|.+.|++-|.|++.+ .+++.++.++.+. .....++-+++. -
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL 73 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence 37899999999999999999999999999866688874 4555555554310 011223334443 3
Q ss_pred cccceeeecccc--Ccccccccccccc--eEEEecCCCC-CCHH
Q 014463 294 HECDVLVPCALG--GVLNKENAADVKA--KFIIEAANHP-TDPE 332 (424)
Q Consensus 294 ~~~DIliPaA~~--~~It~~na~~i~a--kiIvEgAN~p-~t~e 332 (424)
.++||+|-|.-. ..|+++....... ++|++-|+-+ ++|+
T Consensus 74 ~~~DivI~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~ 117 (135)
T PF01488_consen 74 QEADIVINATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDPE 117 (135)
T ss_dssp HTESEEEE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-TT
T ss_pred hhCCeEEEecCCCCcccCHHHHHHHHhhhhceeccccCCCCChh
Confidence 579999988643 3778887777653 6999999743 4554
No 46
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.81 E-value=0.0065 Score=56.04 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=70.0
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc
Q 014463 214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 293 (424)
Q Consensus 214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~ 293 (424)
.+.++.|+||.|.|+|++|+.+|+.|...|++|++ .|.+.. .-...... +....+-++++.
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~-~d~~~~----------~~~~~~~~--------~~~~~~l~ell~ 90 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIG-YDRSPK----------PEEGADEF--------GVEYVSLDELLA 90 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEE-EESSCH----------HHHHHHHT--------TEEESSHHHHHH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecCCceeEE-ecccCC----------hhhhcccc--------cceeeehhhhcc
Confidence 35679999999999999999999999999999994 454321 00001110 112223345553
Q ss_pred cccceeeeccc-----cCcccccccccccc-eEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463 294 HECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 349 (424)
Q Consensus 294 ~~~DIliPaA~-----~~~It~~na~~i~a-kiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l 349 (424)
.||+++-+.- .+.|+++....++- -+++.-|-+.+ +.+|- +.|++.-|. ..=|+.
T Consensus 91 -~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~ 154 (178)
T PF02826_consen 91 -QADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVF 154 (178)
T ss_dssp -H-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-
T ss_pred -hhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECC
Confidence 6899987764 35566666666653 48888888885 55443 566665554 344433
No 47
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.75 E-value=0.016 Score=58.87 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=88.1
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 294 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~ 294 (424)
|.++.|++|.|.|+|++|+.+|+.|...|++|+ +.|.+. . .. . .... +....+.++++ .
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~-~~d~~~-----~---~~--~--~~~~-------~~~~~~l~ell-~ 203 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRIL-YYSRTR-----K---PE--A--EKEL-------GAEYRPLEELL-R 203 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEE-EECCCC-----C---hh--h--HHHc-------CCEecCHHHHH-h
Confidence 346899999999999999999999999999987 456532 1 00 0 0111 11222334554 4
Q ss_pred ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-EeccccccccCcchhhHHHhhh
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIYANSGGVTVSYFEWVQN 365 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn 365 (424)
+||+++-|.- .+.|+++....++ -.+++.-+=+++ +.+|- +.|++.-|. ..=|+..+=-=. -+.+.-+.|
T Consensus 204 ~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~n 282 (333)
T PRK13243 204 ESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKN 282 (333)
T ss_pred hCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCC
Confidence 7999998874 3446655555553 357788888874 44443 567766553 223433222111 122211122
Q ss_pred ---ccccCCCHHHHHHHHHHHHHHHHHHH
Q 014463 366 ---IQGFMWEEEKVNHELKRYMMSAFKDI 391 (424)
Q Consensus 366 ---~~~~~w~~e~v~~~l~~~m~~~~~~v 391 (424)
..|..|..++...++.+.+.+.+.+.
T Consensus 283 vilTPHia~~t~e~~~~~~~~~~~ni~~~ 311 (333)
T PRK13243 283 VVLAPHIGSATFEAREGMAELVAENLIAF 311 (333)
T ss_pred EEECCcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 13555655555665555545544443
No 48
>PLN02494 adenosylhomocysteinase
Probab=96.71 E-value=0.0078 Score=63.87 Aligned_cols=98 Identities=19% Similarity=0.335 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
-||.+++ +.+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |+|.+. .........
T Consensus 235 GtgqS~~---d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~dp----------~r~~eA~~~---- 296 (477)
T PLN02494 235 GCRHSLP---DGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEIDP----------ICALQALME---- 296 (477)
T ss_pred cccccHH---HHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCc----------hhhHHHHhc----
Confidence 3555553 4445556777899999999999999999999999999987 566532 111111111
Q ss_pred ccCCCCeeecCCcccccccceeeeccc-cCcccccccccccc
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKA 318 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~a 318 (424)
+| ..++.++++ ..+||+|-|.- .+.|+.+....++.
T Consensus 297 -G~---~vv~leEal-~~ADVVI~tTGt~~vI~~e~L~~MK~ 333 (477)
T PLN02494 297 -GY---QVLTLEDVV-SEADIFVTTTGNKDIIMVDHMRKMKN 333 (477)
T ss_pred -CC---eeccHHHHH-hhCCEEEECCCCccchHHHHHhcCCC
Confidence 11 112223433 36899998754 34567776666644
No 49
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=96.61 E-value=0.041 Score=55.47 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=72.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
.++.|+||.|.|||++|+.+|+++...|++|++ .|..+.-. .. .+ ...+-++++ ..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~-~d~~~~~~-~~------------------~~---~~~~l~ell-~~ 196 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY-YSTSGKNK-NE------------------EY---ERVSLEELL-KT 196 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEE-ECCCcccc-cc------------------Cc---eeecHHHHh-hc
Confidence 358999999999999999999999999999985 45432100 00 11 122334555 36
Q ss_pred cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCceEeccccc
Q 014463 296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVVILPDIYA 350 (424)
Q Consensus 296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~viPD~la 350 (424)
||+++-+.- .+.|+++...+++ --+++.-|=+++ ..+|- +.|++.-|...=|++.
T Consensus 197 sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~ 259 (311)
T PRK08410 197 SDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLE 259 (311)
T ss_pred CCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCC
Confidence 888887763 3356666666664 357788888885 54443 6777766654445543
No 50
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.56 E-value=0.077 Score=53.60 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=69.6
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
++.|+||.|.|+|++|+.+|+++...|++|++. |... +...+ .. ..+-++++ ..|
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~-~~~~----~~~~~--------------~~-----~~~l~ell-~~s 198 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYA-EHKG----ASVCR--------------EG-----YTPFEEVL-KQA 198 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEE-CCCc----ccccc--------------cc-----cCCHHHHH-HhC
Confidence 589999999999999999999999999999864 3321 00000 00 11224444 368
Q ss_pred ceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463 297 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 349 (424)
Q Consensus 297 DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l 349 (424)
|+++-+.- .+-|+.+...+++ --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus 199 Div~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~ 260 (314)
T PRK06932 199 DIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVL 260 (314)
T ss_pred CEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecC
Confidence 88887763 3446666666554 357788888885 55543 577766664 334443
No 51
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.55 E-value=0.018 Score=57.18 Aligned_cols=123 Identities=19% Similarity=0.273 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEEcCCCceeCCCC-CCHHH
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDITGAIKNPNG-IDVPA 266 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~i~~~~G-lDi~~ 266 (424)
-||-=+..++..+++..|.++++.||+|.|.|..|..++++|.+. |. +=+-+.|++|-+++... ++ +.
T Consensus 3 GTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~-~~ 81 (279)
T cd05312 3 GTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLT-PF 81 (279)
T ss_pred hHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcch-HH
Confidence 366667777888888889999999999999999999999999765 86 33348999999997553 32 11
Q ss_pred HHHHHHhcCCcccCCCCeeecCCccc-ccccceeeecc-ccCcccccccccc----cceEEEecCCC
Q 014463 267 LLKYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCA-LGGVLNKENAADV----KAKFIIEAANH 327 (424)
Q Consensus 267 L~~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA-~~~~It~~na~~i----~akiIvEgAN~ 327 (424)
...+.+.... ....+-.|.+ .+++||||=+. .++.+|++-++.. +=.+|---+|-
T Consensus 82 ~~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 142 (279)
T cd05312 82 KKPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP 142 (279)
T ss_pred HHHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence 2222222111 0111122333 46999999888 4799999988776 34688888884
No 52
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.54 E-value=0.032 Score=56.67 Aligned_cols=37 Identities=30% Similarity=0.474 Sum_probs=32.7
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
|..+.|+||.|+|||++|+.+|+.|...|.+|++ .|.
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~ 173 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDP 173 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECC
Confidence 4468899999999999999999999999999995 444
No 53
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.51 E-value=0.05 Score=55.68 Aligned_cols=130 Identities=22% Similarity=0.335 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHC-CC-EEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEH-GG-KVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-Ga-kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.|.+-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.++ |. +++ +.+.+ .+.+.+...+-
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R~----------~~rl~~La~el 201 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVARQ----------QERLQELQAEL 201 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcCC----------HHHHHHHHHHh
Confidence 3666666678888888898999999999998 89999999999754 64 665 55543 22333332221
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc--cC-cccccccccccceEEEecCCCC-CCHHHHHHHHhCCceEeccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL--GG-VLNKENAADVKAKFIIEAANHP-TDPEADEILSKKGVVILPDIYA 350 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~--~~-~It~~na~~i~akiIvEgAN~p-~t~eA~~iL~~rGI~viPD~la 350 (424)
..+...+-++.+ .++|+++=|+- .. .|+.+..+ +-.+|++.|.-. +.|+.. + ||+..
T Consensus 202 ------~~~~i~~l~~~l-~~aDiVv~~ts~~~~~~I~~~~l~--~~~~viDiAvPRDVd~~v~----~------~~V~v 262 (340)
T PRK14982 202 ------GGGKILSLEEAL-PEADIVVWVASMPKGVEIDPETLK--KPCLMIDGGYPKNLDTKVQ----G------PGIHV 262 (340)
T ss_pred ------ccccHHhHHHHH-ccCCEEEECCcCCcCCcCCHHHhC--CCeEEEEecCCCCCCcccC----C------CCEEE
Confidence 111111112333 36899887774 34 26766553 557999999754 555431 1 55555
Q ss_pred cccCcch
Q 014463 351 NSGGVTV 357 (424)
Q Consensus 351 NaGGVi~ 357 (424)
=-||++.
T Consensus 263 ~~gG~V~ 269 (340)
T PRK14982 263 LKGGIVE 269 (340)
T ss_pred EeCCccc
Confidence 5566654
No 54
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.48 E-value=0.018 Score=64.46 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK 271 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~ 271 (424)
..||-=+..++..+++..|.+++..||+|.|.|..|-.++++|...|. +|+ ++|++|.++... +++..+. .+.
T Consensus 162 ~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~-~~a 239 (752)
T PRK07232 162 HGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA-AYA 239 (752)
T ss_pred chHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH-HHh
Confidence 468888888888899989999999999999999999999999999998 565 999999999754 3443222 111
Q ss_pred HhcCCcccCCCCeeecCCcccccccceeeeccccCccccccccccc-ceEEEecCCC
Q 014463 272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANH 327 (424)
Q Consensus 272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~ 327 (424)
+.+ + .-+-.|.+.. +||||=++.++.+|++-++... -.+|---||-
T Consensus 240 ~~~----~-----~~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 286 (752)
T PRK07232 240 VDT----D-----ARTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMADNPIIFALANP 286 (752)
T ss_pred ccC----C-----CCCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEecCCC
Confidence 110 0 0122344444 8999998889999999887763 3577777774
No 55
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.46 E-value=0.12 Score=54.27 Aligned_cols=101 Identities=18% Similarity=0.269 Sum_probs=66.0
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc--
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-- 293 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-- 293 (424)
.++++++|.|.|.|.+|+.+++.|.+.|++-+.|+..+ .+...++.++.+. ...++-+++.+
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------~~ra~~La~~~~~------~~~~~~~~l~~~l 240 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------IEKAQKITSAFRN------ASAHYLSELPQLI 240 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHhcC------CeEecHHHHHHHh
Confidence 35889999999999999999999999998666688875 2333344333211 12222233322
Q ss_pred cccceeeeccc--cCcccccccccccceEEEecCCCC-CCHHH
Q 014463 294 HECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHP-TDPEA 333 (424)
Q Consensus 294 ~~~DIliPaA~--~~~It~~na~~i~akiIvEgAN~p-~t~eA 333 (424)
.++||+|-|.. ..+|+.+.... +-.++++-|+.. +.|+.
T Consensus 241 ~~aDiVI~aT~a~~~vi~~~~~~~-~~~~~iDLavPRdidp~v 282 (414)
T PRK13940 241 KKADIIIAAVNVLEYIVTCKYVGD-KPRVFIDISIPQALDPKL 282 (414)
T ss_pred ccCCEEEECcCCCCeeECHHHhCC-CCeEEEEeCCCCCCCccc
Confidence 47999999875 34567555432 345888888754 45543
No 56
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.43 E-value=0.0058 Score=49.96 Aligned_cols=86 Identities=27% Similarity=0.265 Sum_probs=55.4
Q ss_pred eEEEEecChHHHHHHHHHHHCC---CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee--cCCccccccc
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM--DLNDLLVHEC 296 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i--~~~~ll~~~~ 296 (424)
||+|+|+||+|..+++-|.+.| .+|.-+++.+ .+.+.+++++.+ .... ++.++.+ ++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~-------~~~~~~~~~~~~~-~a 62 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYG-------VQATADDNEEAAQ-EA 62 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCT-------TEEESEEHHHHHH-HT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhc-------cccccCChHHhhc-cC
Confidence 6899999999999999999999 8887565663 566666666543 1211 3455555 89
Q ss_pred ceeeeccccCcccccccc----cccceEEEecCC
Q 014463 297 DVLVPCALGGVLNKENAA----DVKAKFIIEAAN 326 (424)
Q Consensus 297 DIliPaA~~~~It~~na~----~i~akiIvEgAN 326 (424)
|++|.|--...+.+ -+. ..+-++|+.-+|
T Consensus 63 dvvilav~p~~~~~-v~~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 63 DVVILAVKPQQLPE-VLSEIPHLLKGKLVISIAA 95 (96)
T ss_dssp SEEEE-S-GGGHHH-HHHHHHHHHTTSEEEEEST
T ss_pred CEEEEEECHHHHHH-HHHHHhhccCCCEEEEeCC
Confidence 99999965554422 111 224556665554
No 57
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=96.41 E-value=0.037 Score=56.54 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC
Q 014463 204 FFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG 283 (424)
Q Consensus 204 ~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~ 283 (424)
.+++..+++.+ .++++++|.|+|.|.+|+-+++.|.++|++-|.|+..+-.. ++.+.+ + .
T Consensus 159 ~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-----~~~~~~-------------~-~ 218 (338)
T PRK00676 159 ESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-----LPYRTV-------------V-R 218 (338)
T ss_pred HHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-----cchhhh-------------h-h
Confidence 33344444555 45999999999999999999999999997656688876411 111100 0 0
Q ss_pred eeecCCcccccccceeeec-----cccCcccccccccccceEEEecCCCC
Q 014463 284 NAMDLNDLLVHECDVLVPC-----ALGGVLNKENAADVKAKFIIEAANHP 328 (424)
Q Consensus 284 ~~i~~~~ll~~~~DIliPa-----A~~~~It~~na~~i~akiIvEgAN~p 328 (424)
+.+ + +..++||+|-| +....|+.+.......|++++-|+..
T Consensus 219 ~~~---~-~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~~~r~~iDLAvPR 264 (338)
T PRK00676 219 EEL---S-FQDPYDVIFFGSSESAYAFPHLSWESLADIPDRIVFDFNVPR 264 (338)
T ss_pred hhh---h-cccCCCEEEEcCCcCCCCCceeeHHHHhhccCcEEEEecCCC
Confidence 000 1 23578999965 45667887777666668999999854
No 58
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.40 E-value=0.0099 Score=62.13 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
.||.+++.+ +++..+..+.|++|+|.|+|++|+.+|+.+...|++|+ |.|.+ .....+... .
T Consensus 176 g~g~s~~~~---i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d----------p~r~~~A~~-~--- 237 (406)
T TIGR00936 176 GTGQSTIDG---ILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD----------PIRALEAAM-D--- 237 (406)
T ss_pred ccchhHHHH---HHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC----------hhhHHHHHh-c---
Confidence 466655543 44445667899999999999999999999999999987 56653 112211111 1
Q ss_pred ccCCCCeeecCCcccccccceeeeccc-cCcccccccccc
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADV 316 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i 316 (424)
+....+.++.+ ..+||+|.|.- .+.|+.+....+
T Consensus 238 ----G~~v~~leeal-~~aDVVItaTG~~~vI~~~~~~~m 272 (406)
T TIGR00936 238 ----GFRVMTMEEAA-KIGDIFITATGNKDVIRGEHFENM 272 (406)
T ss_pred ----CCEeCCHHHHH-hcCCEEEECCCCHHHHHHHHHhcC
Confidence 12222233443 47899998753 345665444444
No 59
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.35 E-value=0.056 Score=57.71 Aligned_cols=153 Identities=17% Similarity=0.284 Sum_probs=92.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
--+.|...+++ +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.+ .+++.+..++.+.
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R~----------~~~~~~la~~~~~- 377 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNRT----------KAHAEALASRCQG- 377 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHhcc-
Confidence 34677777764 45678899999999999999999999999999876 66653 2333333332110
Q ss_pred ccCCCCeeecCCccc-ccccceeeeccccCcccccccccccceEEEecCCCCC-CHHHHHHHHhCCceEeccccccccCc
Q 014463 278 NDFQGGNAMDLNDLL-VHECDVLVPCALGGVLNKENAADVKAKFIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGV 355 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll-~~~~DIliPaA~~~~It~~na~~i~akiIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNaGGV 355 (424)
..++.+++- -.++|++|-|.-.+..-+.. +. ++|++-.-+|. |+ --+..+++|+.++..
T Consensus 378 ------~~~~~~~~~~l~~~DiVInatP~g~~~~~~---l~-~~v~D~~Y~P~~T~-ll~~A~~~G~~~~~G-------- 438 (477)
T PRK09310 378 ------KAFPLESLPELHRIDIIINCLPPSVTIPKA---FP-PCVVDINTLPKHSP-YTQYARSQGSSIIYG-------- 438 (477)
T ss_pred ------ceechhHhcccCCCCEEEEcCCCCCcchhH---Hh-hhEEeccCCCCCCH-HHHHHHHCcCEEECc--------
Confidence 011111111 13789999886433211111 22 48888888774 65 446677888775443
Q ss_pred chhhHHHhh--h-ccccCCCHHHHHHHHHHHHHHHHH
Q 014463 356 TVSYFEWVQ--N-IQGFMWEEEKVNHELKRYMMSAFK 389 (424)
Q Consensus 356 i~s~~E~~q--n-~~~~~w~~e~v~~~l~~~m~~~~~ 389 (424)
+|++- . .+-..|+..++.++|+...++.+.
T Consensus 439 ----~~Ml~~Qa~~~f~lw~g~~~~~~~~~~~~~~~~ 471 (477)
T PRK09310 439 ----YEMFAEQALLQFRLWFPTLLFKHLEKTFRRRVA 471 (477)
T ss_pred ----HHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 23331 1 122347766677777766554443
No 60
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.33 E-value=0.0015 Score=55.84 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=51.9
Q ss_pred ecChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCcccc-cccceee
Q 014463 227 GFGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLV-HECDVLV 300 (424)
Q Consensus 227 GfGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~-~~~DIli 300 (424)
|||+||+.+++.|.+. +.+|++|+|++ .+.+++ ..... ++... .+.+++++ .++||+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASF---------PDEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHH---------THSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhc---------ccccccCCHHHHhcCcCCCEEE
Confidence 8999999999999875 68999999999 776655 11111 11111 12245554 5788888
Q ss_pred eccccCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccccccCcc
Q 014463 301 PCALGGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYANSGGVT 356 (424)
Q Consensus 301 PaA~~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~laNaGGVi 356 (424)
.|+-...+ .+.-.-.-++|+.|+ .+|.|...
T Consensus 65 E~t~~~~~----------------------~~~~~~~L~~G~~VV---t~nk~ala 95 (117)
T PF03447_consen 65 ECTSSEAV----------------------AEYYEKALERGKHVV---TANKGALA 95 (117)
T ss_dssp E-SSCHHH----------------------HHHHHHHHHTTCEEE---ES-HHHHH
T ss_pred ECCCchHH----------------------HHHHHHHHHCCCeEE---EECHHHhh
Confidence 88433211 122233456888875 58888775
No 61
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.29 E-value=0.021 Score=56.05 Aligned_cols=121 Identities=18% Similarity=0.167 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-----------EEEEEEcCCCceeCCCC-CCHH
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-----------KVVAVSDITGAIKNPNG-IDVP 265 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-----------kVVaVsD~~G~i~~~~G-lDi~ 265 (424)
-||-=+..++..+++..|.++++.||+|.|.|..|-.++++|.+.+. ++. +.|++|-+++... ++..
T Consensus 3 GTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~-~vD~~Gll~~~r~~l~~~ 81 (254)
T cd00762 3 GTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIW-XVDRKGLLVKNRKETCPN 81 (254)
T ss_pred hhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEE-EECCCCeEeCCCCccCHH
Confidence 36666677778888888999999999999999999999999987654 455 8999999997553 4332
Q ss_pred HHH--HHHHhcCCcccCCCCeeecCCccc-ccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463 266 ALL--KYKKSNKSLNDFQGGNAMDLNDLL-VHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH 327 (424)
Q Consensus 266 ~L~--~~~~~~g~v~~~~~~~~i~~~~ll-~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~ 327 (424)
... ++.+. .....+-.|.+ ..+.||||=++. ++.+|++-++... =.+|---+|-
T Consensus 82 ~~~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP 143 (254)
T cd00762 82 EYHLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNP 143 (254)
T ss_pred HHHHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCc
Confidence 111 11111 00111112333 469999998776 9999999887753 4688888884
No 62
>PLN02928 oxidoreductase family protein
Probab=96.29 E-value=0.054 Score=55.47 Aligned_cols=124 Identities=22% Similarity=0.313 Sum_probs=73.2
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC--CCeeecCCcccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ--GGNAMDLNDLLV 293 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~--~~~~i~~~~ll~ 293 (424)
.++.|+|+.|.|+|++|+.+|+.|...|++|++ .|.+.. ++ ......+. ...+..+. .....+-++++
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~-~dr~~~---~~---~~~~~~~~--~~~~~~~~~~~~~~~~L~ell- 224 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLA-TRRSWT---SE---PEDGLLIP--NGDVDDLVDEKGGHEDIYEFA- 224 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEE-ECCCCC---hh---hhhhhccc--cccccccccccCcccCHHHHH-
Confidence 469999999999999999999999999999984 454321 00 00000000 00000100 01111223444
Q ss_pred cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463 294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 349 (424)
Q Consensus 294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l 349 (424)
.+|||++-|.- .+.|+++....++ -.+++.-|=+++ ..+|- +.|.+.-|. ..=|..
T Consensus 225 ~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 225 GEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred hhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 36899998863 4456666666664 358888888885 55544 566665553 344554
No 63
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.29 E-value=0.21 Score=52.38 Aligned_cols=99 Identities=25% Similarity=0.409 Sum_probs=62.4
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--c
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--V 293 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~ 293 (424)
++.+++|+|.|.|.+|+.+++.|...| .+|+ |.+.+ .+...+..++.+. ..++.+++. -
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs----------~~ra~~la~~~g~-------~~i~~~~l~~~l 238 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT----------YERAEDLAKELGG-------EAVKFEDLEEYL 238 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC----------HHHHHHHHHHcCC-------eEeeHHHHHHHH
Confidence 478999999999999999999999999 4555 77764 2333333333221 112212221 1
Q ss_pred cccceeeeccc--cCcccccccccc-----cceEEEecCCCC-CCHHH
Q 014463 294 HECDVLVPCAL--GGVLNKENAADV-----KAKFIIEAANHP-TDPEA 333 (424)
Q Consensus 294 ~~~DIliPaA~--~~~It~~na~~i-----~akiIvEgAN~p-~t~eA 333 (424)
.++||+|-|.. ...|+.+.+... +..+|+.-|+.. ++|+.
T Consensus 239 ~~aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v 286 (417)
T TIGR01035 239 AEADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAV 286 (417)
T ss_pred hhCCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhh
Confidence 37999999963 445666655442 234889998533 56654
No 64
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.28 E-value=0.14 Score=53.66 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=63.0
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc--cc
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL--VH 294 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll--~~ 294 (424)
++.+++|+|.|.|.+|+.+++.|...|++-|.|++.+ .+...++.++.+. ..++.+++. -.
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~----------~~ra~~la~~~g~-------~~~~~~~~~~~l~ 241 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT----------LERAEELAEEFGG-------EAIPLDELPEALA 241 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC----------HHHHHHHHHHcCC-------cEeeHHHHHHHhc
Confidence 5789999999999999999999999998444477764 2344434433221 111111211 13
Q ss_pred ccceeeeccc--cCcccccccccc------cceEEEecCCCC-CCHH
Q 014463 295 ECDVLVPCAL--GGVLNKENAADV------KAKFIIEAANHP-TDPE 332 (424)
Q Consensus 295 ~~DIliPaA~--~~~It~~na~~i------~akiIvEgAN~p-~t~e 332 (424)
++|++|-|.. ...|+.+.++.. +-.++++-|+-. +.|+
T Consensus 242 ~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 242 EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 7899999964 345666655432 346889998643 4554
No 65
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=96.26 E-value=0.012 Score=62.58 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=103.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh---cC-CcccCCCCeeecCCccccc--
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NK-SLNDFQGGNAMDLNDLLVH-- 294 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~---~g-~v~~~~~~~~i~~~~ll~~-- 294 (424)
.+|.|+|.|++|+++|+.|.++|.+|. +-|.+ .+...++.+. .+ .+..+ -+.+++.+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~----------~~~~~~l~~~~~~~g~~i~~~-----~s~~e~v~~l~ 65 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT----------YEKTEEFVKKAKEGNTRVKGY-----HTLEELVNSLK 65 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhhhhcCCcceec-----CCHHHHHhcCC
Confidence 379999999999999999999999976 65653 3443333322 12 11111 133455532
Q ss_pred ccceeeeccccCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------------cccccCc
Q 014463 295 ECDVLVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------------YANSGGV 355 (424)
Q Consensus 295 ~~DIliPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~------------laNaGGV 355 (424)
++|+++-|.......++.+ +.+ .-++|+++.|.. .|.+-.+.+.++||.++=-- ..-.||=
T Consensus 66 ~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~ 145 (470)
T PTZ00142 66 KPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGN 145 (470)
T ss_pred CCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCC
Confidence 6898887765554443333 333 357999999985 35556678999999986211 1222332
Q ss_pred chhhHHHhhhc----cc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 014463 356 TVSYFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 409 (424)
Q Consensus 356 i~s~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 409 (424)
- ..|+.++.+ .. ..| --.-|+.-++.-+.+.+.|.++.++ ..++++.+.+.++
T Consensus 146 ~-~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~ 218 (470)
T PTZ00142 146 K-EAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVF 218 (470)
T ss_pred H-HHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Confidence 1 123333221 10 111 0133566677777788888888887 6888887765543
No 66
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.24 E-value=0.12 Score=55.94 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=119.5
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCC
Q 014463 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGS 192 (424)
Q Consensus 113 s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs 192 (424)
+..|-..|...|++++.... |..-|--.|++... ---+.+.|.... | ++ -+-
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~i---~-~F-nDD-------------------- 272 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNKY---R-CF-NDD-------------------- 272 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccCC---C-Ee-ccc--------------------
Confidence 56677889999999998887 55556678887642 234556775321 1 11 111
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH----HCCC-------EEEEEEcCCCceeCCCC
Q 014463 193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPNG 261 (424)
Q Consensus 193 ~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kVVaVsD~~G~i~~~~G 261 (424)
-.-||--+..++..+++..|.+++..||++.|.|..|-.+|++|. +.|. ++. +.|++|-+++..+
T Consensus 273 ---iQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~ 348 (559)
T PTZ00317 273 ---IQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRG 348 (559)
T ss_pred ---chhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC
Confidence 146777778888888998899999999999999999999999887 3686 555 8899999997654
Q ss_pred CCHHHHHHHHHhcCCcccCCCCeeecCCc-ccccccceeeeccc-cCccccccccccc----ceEEEecCCC
Q 014463 262 IDVPALLKYKKSNKSLNDFQGGNAMDLND-LLVHECDVLVPCAL-GGVLNKENAADVK----AKFIIEAANH 327 (424)
Q Consensus 262 lDi~~L~~~~~~~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA~-~~~It~~na~~i~----akiIvEgAN~ 327 (424)
=++..-...+.+... .-++....+-.| +-.++.||||=++. ++.+|++-++... =.||---+|-
T Consensus 349 ~~l~~~k~~fa~~~~--~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP 418 (559)
T PTZ00317 349 DKLAKHKVPFARTDI--SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP 418 (559)
T ss_pred ccccHHHHHHhcccc--ccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 112222221211100 000000011122 33567899998885 7899999887653 4688888874
No 67
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.23 E-value=0.025 Score=56.50 Aligned_cols=93 Identities=25% Similarity=0.285 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+.|..|++.. +++++.+++|++++|.|-++ ||.-++.+|..+|+.|. +++++.. | |.+
T Consensus 144 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~T~-------~---l~~----- 203 (287)
T PRK14176 144 VPCTPHGVIRA----LEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVFTD-------D---LKK----- 203 (287)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEeccCC-------C---HHH-----
Confidence 47899888766 55678999999999999988 99999999999999986 7776320 1 111
Q ss_pred CCcccCCCCeeecCCcccccccceeeecc-ccCcccccccccccceEEEecCC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCA-LGGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA-~~~~It~~na~~i~akiIvEgAN 326 (424)
....+||+|-|. ..+.|+.+.++. .+-+|=-|-|
T Consensus 204 -----------------~~~~ADIvv~AvG~p~~i~~~~vk~-gavVIDvGin 238 (287)
T PRK14176 204 -----------------YTLDADILVVATGVKHLIKADMVKE-GAVIFDVGIT 238 (287)
T ss_pred -----------------HHhhCCEEEEccCCccccCHHHcCC-CcEEEEeccc
Confidence 234788888765 366777665554 3333333444
No 68
>PRK07574 formate dehydrogenase; Provisional
Probab=96.22 E-value=0.048 Score=56.73 Aligned_cols=157 Identities=11% Similarity=0.124 Sum_probs=88.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH 294 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~~ 294 (424)
.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+. .+.+ .. +.. +.+. .+.++++ .
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr~~-------~~~~-~~---~~~-------g~~~~~~l~ell-~ 247 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDRHR-------LPEE-VE---QEL-------GLTYHVSFDSLV-S 247 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECCCC-------Cchh-hH---hhc-------CceecCCHHHHh-h
Confidence 348999999999999999999999999999984 45432 1211 10 010 1111 2334555 5
Q ss_pred ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCcchhhHHHhhh
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN 365 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn 365 (424)
.|||++-|.- .+.|+++....++ -.+++.-|-+++ ..+| .+.|++.-|. ..=|+.-+=--..-+-+.-+.|
T Consensus 248 ~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pN 327 (385)
T PRK07574 248 VCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPR 327 (385)
T ss_pred cCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCC
Confidence 7999998864 3456655555553 358888888885 4433 3677776664 3344433211111111211223
Q ss_pred c---cccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463 366 I---QGFMWEEEKVNHELKRYMMSAFKDIK 392 (424)
Q Consensus 366 ~---~~~~w~~e~v~~~l~~~m~~~~~~v~ 392 (424)
. .|..+.-.+...++.+...+.+.+.+
T Consensus 328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~ 357 (385)
T PRK07574 328 NGMTPHISGTTLSAQARYAAGTREILECFF 357 (385)
T ss_pred eEECCccccCcHHHHHHHHHHHHHHHHHHH
Confidence 1 34444445555555555455544443
No 69
>PRK12862 malic enzyme; Reviewed
Probab=96.21 E-value=0.03 Score=62.96 Aligned_cols=119 Identities=24% Similarity=0.276 Sum_probs=89.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCC--CCCHHHHHHHH
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPN--GIDVPALLKYK 271 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~--GlDi~~L~~~~ 271 (424)
.-||-=+..++..+++..|++++..||+|.|.|..|..++++|...|. +|+ ++|++|.++... +++..+. .+.
T Consensus 170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~-~~a 247 (763)
T PRK12862 170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA-RYA 247 (763)
T ss_pred ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH-HHh
Confidence 467777788888899989999999999999999999999999999998 565 899999999754 3543322 122
Q ss_pred HhcCCcccCCCCeeecCCcccccccceeeeccccCccccccccccc-ceEEEecCCC
Q 014463 272 KSNKSLNDFQGGNAMDLNDLLVHECDVLVPCALGGVLNKENAADVK-AKFIIEAANH 327 (424)
Q Consensus 272 ~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~ 327 (424)
+.+ +. -+-.|.+.. +||||=++.++.+|++-++... =.+|---||-
T Consensus 248 ~~~----~~-----~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~~~piifalsNP 294 (763)
T PRK12862 248 QKT----DA-----RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMAPRPLIFALANP 294 (763)
T ss_pred hhc----cc-----CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhccCCEEEeCCCC
Confidence 221 10 122344544 8999998889999999888763 3577777874
No 70
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.20 E-value=0.054 Score=54.98 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV 293 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~ 293 (424)
|.+|.|+|+.|.|+|++|+.+|+.+. ..|.+|+ ..|... +.+.. .. + +.+..+-++++
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~-~~~~~~--------~~~~~----~~------~-~~~~~~l~ell- 198 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPIL-YNARRH--------HKEAE----ER------F-NARYCDLDTLL- 198 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEE-EECCCC--------chhhH----Hh------c-CcEecCHHHHH-
Confidence 44689999999999999999999997 8999998 444321 00000 00 0 12223334554
Q ss_pred cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463 294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 349 (424)
Q Consensus 294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l 349 (424)
..||+++-+.- .+.|+.+.....+ --+++.-|-+++ ..+|- +.|++.-|. ..=|+.
T Consensus 199 ~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 199 QESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred HhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 47898887763 3346666555553 358888888885 44443 567766664 334443
No 71
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.19 E-value=0.02 Score=57.12 Aligned_cols=169 Identities=17% Similarity=0.239 Sum_probs=96.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc--cccce
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV--HECDV 298 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~--~~~DI 298 (424)
++|.|+|+|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + ...+. +.+++.+ .++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~----------~~~~~~l~~~-g-~~~~~-----s~~~~~~~~~~~dv 62 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD----------QDAVKAMKED-R-TTGVA-----NLRELSQRLSAPRV 62 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHHc-C-CcccC-----CHHHHHhhcCCCCE
Confidence 379999999999999999999999987 45653 3444444432 1 11111 1223322 35899
Q ss_pred eeeccccCccccccc----ccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccccc------------cccCcchhh
Q 014463 299 LVPCALGGVLNKENA----ADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIYA------------NSGGVTVSY 359 (424)
Q Consensus 299 liPaA~~~~It~~na----~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~la------------NaGGVi~s~ 359 (424)
++-|.-.. ..++.+ +.+ +-++|++..|.. .|.+..+.+.++|+.++---+. ..||=- ..
T Consensus 63 Ii~~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~-~~ 140 (298)
T TIGR00872 63 VWVMVPHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDG-EA 140 (298)
T ss_pred EEEEcCch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCH-HH
Confidence 88775433 323222 223 236899999984 4666667899999987642221 222211 11
Q ss_pred HHHhhh----cc----ccCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHH
Q 014463 360 FEWVQN----IQ----GFMW--------EEEKVNHELKRYMMSAFKDIKTMCQTH--NCNLRMGAFTL 409 (424)
Q Consensus 360 ~E~~qn----~~----~~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~~--~~~~r~aA~~~ 409 (424)
++-++. +. +..+ .-+.++.-+.--+..++.+.++.+++. ++++.+.+.++
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~ 208 (298)
T TIGR00872 141 FARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVW 208 (298)
T ss_pred HHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 222221 11 0111 012344455555567788888888876 46877766553
No 72
>PLN03139 formate dehydrogenase; Provisional
Probab=96.15 E-value=0.078 Score=55.18 Aligned_cols=108 Identities=23% Similarity=0.323 Sum_probs=69.0
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH 294 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~ 294 (424)
.++.|++|.|.|+|++|+.+|+.|...|++|++ .|.+. .+.+.. ++. +.... +-++++ .
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~~-------~~~~~~----~~~-------g~~~~~~l~ell-~ 254 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRLK-------MDPELE----KET-------GAKFEEDLDAML-P 254 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCCC-------cchhhH----hhc-------CceecCCHHHHH-h
Confidence 359999999999999999999999999999974 55432 221111 111 11122 234555 4
Q ss_pred ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV 343 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~ 343 (424)
+||+++-|.- .+.|+++....++ -.+++.-|=+++ ..+|- +.|++.-|.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 6999998764 3345555444442 357888888875 44443 567766664
No 73
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.09 E-value=0.013 Score=60.86 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+.+-=++..+-.+.+..|..++|+||.|+|+|++|+.+|+.|...|.+|+ +.|.
T Consensus 94 aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~-~~Dp 147 (381)
T PRK00257 94 GVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVL-VCDP 147 (381)
T ss_pred HHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEE-EECC
Confidence 33333444445555667888999999999999999999999999999998 4464
No 74
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.03 E-value=0.022 Score=58.22 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
.-||.+.+-++..+ .+.-+.||+++|-|||.||+..|..|.-.||+|+ |++.+- +.+|.+..+
T Consensus 189 YGtgqS~~DgI~Ra---Tn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvDP---------I~AleA~Md---- 251 (420)
T COG0499 189 YGTGQSLLDGILRA---TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVDP---------IRALEAAMD---- 251 (420)
T ss_pred cccchhHHHHHHhh---hceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecCc---------hHHHHHhhc----
Confidence 45777766655543 3455899999999999999999999999999988 998752 455544332
Q ss_pred cccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEE
Q 014463 277 LNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFII 322 (424)
Q Consensus 277 v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIv 322 (424)
|-+.++-++.- ...||||-|.. .++|+.+-....+=..|+
T Consensus 252 -----Gf~V~~m~~Aa-~~gDifiT~TGnkdVi~~eh~~~MkDgaIl 292 (420)
T COG0499 252 -----GFRVMTMEEAA-KTGDIFVTATGNKDVIRKEHFEKMKDGAIL 292 (420)
T ss_pred -----CcEEEEhHHhh-hcCCEEEEccCCcCccCHHHHHhccCCeEE
Confidence 23344333322 35699999875 678888887777665555
No 75
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.01 E-value=0.18 Score=49.54 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCc
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSL 277 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v 277 (424)
--+.|...+++. .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.|.+ .+++.++.++-.
T Consensus 99 TD~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~----------~~~~~~la~~~~-- 161 (270)
T TIGR00507 99 TDGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT----------VSKAEELAERFQ-- 161 (270)
T ss_pred CCHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHHHh--
Confidence 346777777543 3445678899999999999999999999998766 66653 233333333211
Q ss_pred ccCCCCeeecCCcccccccceeeeccccCc---ccccc--cccc-cceEEEecCCCCC-CHHHHHHHHhCCceEec
Q 014463 278 NDFQGGNAMDLNDLLVHECDVLVPCALGGV---LNKEN--AADV-KAKFIIEAANHPT-DPEADEILSKKGVVILP 346 (424)
Q Consensus 278 ~~~~~~~~i~~~~ll~~~~DIliPaA~~~~---It~~n--a~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~viP 346 (424)
.+......+.++....++||+|-|.-.+. +.+.. ...+ .-++|++-.-.|. | .--+..+++|+.++.
T Consensus 162 -~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 162 -RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-PFLAEAKSLGTKTID 235 (270)
T ss_pred -hcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-HHHHHHHHCCCeeeC
Confidence 11111122222322347999998875332 21111 1123 2348888887774 5 455677888887654
No 76
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.99 E-value=0.025 Score=55.85 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=68.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH--CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
++.+||+|+|+|.+|+..++.|.+ .+.++++|+|.+ .+...+..++.+....| -+.++++ .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~~~-----~~~eell-~~ 67 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPPPV-----VPLDQLA-TH 67 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCccc-----CCHHHHh-cC
Confidence 456899999999999999998876 478999998874 33444443332211111 2335665 47
Q ss_pred cceeeeccccCccccccccc-c--cceEEEecCCCC-CCHHHHHHHHhCCceE-ec
Q 014463 296 CDVLVPCALGGVLNKENAAD-V--KAKFIIEAANHP-TDPEADEILSKKGVVI-LP 346 (424)
Q Consensus 296 ~DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p-~t~eA~~iL~~rGI~v-iP 346 (424)
+|+++.|+-.... .+-+.. + +..++++..-.. ...+..+..+++|+.+ +|
T Consensus 68 ~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~ 122 (271)
T PRK13302 68 ADIVVEAAPASVL-RAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVP 122 (271)
T ss_pred CCEEEECCCcHHH-HHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEc
Confidence 9999999865433 333222 2 335777632211 1234445677888764 54
No 77
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.98 E-value=0.049 Score=54.76 Aligned_cols=83 Identities=24% Similarity=0.310 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee
Q 014463 207 TEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM 286 (424)
Q Consensus 207 ~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i 286 (424)
++.+...++. +.+++|+|.|.|.+|+.+++.|...|++.|.|+|.+ .+...++.++.+. ..+
T Consensus 166 v~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------~~ra~~la~~~g~-------~~~ 227 (311)
T cd05213 166 VELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------YERAEELAKELGG-------NAV 227 (311)
T ss_pred HHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------HHHHHHHHHHcCC-------eEE
Confidence 4444334443 789999999999999999999998887666688874 3444444444321 222
Q ss_pred cCCcccc--cccceeeeccccCc
Q 014463 287 DLNDLLV--HECDVLVPCALGGV 307 (424)
Q Consensus 287 ~~~~ll~--~~~DIliPaA~~~~ 307 (424)
+.+++.+ .++||+|-|.....
T Consensus 228 ~~~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 228 PLDELLELLNEADVVISATGAPH 250 (311)
T ss_pred eHHHHHHHHhcCCEEEECCCCCc
Confidence 2222221 36899888866443
No 78
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.96 E-value=0.23 Score=49.08 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=91.0
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV 300 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli 300 (424)
+|.|+|+|++|+.+++.|.+.|.+|+ +.|.+ .+.+....+. +. ... +..+++ .+||++|
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~----------~~~~~~~~~~-g~-------~~~~~~~~~~-~~aDivi 60 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG----------PEVADELLAA-GA-------VTAETARQVT-EQADVIF 60 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-CC-------cccCCHHHHH-hcCCEEE
Confidence 48999999999999999999999987 55553 2333332222 11 111 222333 4799999
Q ss_pred eccccCcccccc-------cccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccccc------cccC--cchh----
Q 014463 301 PCALGGVLNKEN-------AADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDIYA------NSGG--VTVS---- 358 (424)
Q Consensus 301 PaA~~~~It~~n-------a~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~la------NaGG--Vi~s---- 358 (424)
-|.-........ ...+ .-++|+...+... +.+..+.+.++|+.++.--+. -.|- ++++
T Consensus 61 ~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~ 140 (291)
T TIGR01505 61 TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQA 140 (291)
T ss_pred EecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHH
Confidence 986543211111 1122 3368887665542 234556788899876642221 1110 1111
Q ss_pred hHHHh----hhccc----cCC-CHH----HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463 359 YFEWV----QNIQG----FMW-EEE----KVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 410 (424)
Q Consensus 359 ~~E~~----qn~~~----~~w-~~e----~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 410 (424)
.++.+ +.+.. ... ... -++.-+.......+.+.+..+++.|+++.+..-.+.
T Consensus 141 ~~~~~~~ll~~lg~~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~ 205 (291)
T TIGR01505 141 VFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALR 205 (291)
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 12222 11111 011 111 122233333345578888999999999988776554
No 79
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.95 E-value=0.02 Score=56.17 Aligned_cols=124 Identities=20% Similarity=0.203 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHC----CC------EEEEEEcCCCceeCCCCCCHHHH
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEH----GG------KVVAVSDITGAIKNPNGIDVPAL 267 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----Ga------kVVaVsD~~G~i~~~~GlDi~~L 267 (424)
-||-=+..++..+++..|.+|++.||++.|.|..|-.++++|.+. |. +=+-+.|++|-+++.. -|+..-
T Consensus 3 GTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~ 81 (255)
T PF03949_consen 3 GTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPH 81 (255)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHH
T ss_pred hhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChh
Confidence 356666677788888889999999999999999999999999876 87 3344899999999755 333333
Q ss_pred HHHHHh-cCCcccCCCCeeecCCc-ccccccceeeecc-ccCccccccccccc----ceEEEecCCC
Q 014463 268 LKYKKS-NKSLNDFQGGNAMDLND-LLVHECDVLVPCA-LGGVLNKENAADVK----AKFIIEAANH 327 (424)
Q Consensus 268 ~~~~~~-~g~v~~~~~~~~i~~~~-ll~~~~DIliPaA-~~~~It~~na~~i~----akiIvEgAN~ 327 (424)
...+.+ ...... ..+-.| +-..+.||||=++ .++.+|++-++... -.+|---+|-
T Consensus 82 ~~~~a~~~~~~~~-----~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNP 143 (255)
T PF03949_consen 82 KKPFARKTNPEKD-----WGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNP 143 (255)
T ss_dssp HHHHHBSSSTTT-------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSS
T ss_pred hhhhhccCccccc-----ccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCC
Confidence 332222 111111 111122 3356789999888 89999999988864 4688888884
No 80
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.91 E-value=0.028 Score=55.03 Aligned_cols=109 Identities=22% Similarity=0.206 Sum_probs=66.3
Q ss_pred CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 298 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI 298 (424)
++|+|.|+ |.+|+..++.+.+ .+.++++++|.+..-... . .+ ..+..+ -+-++++. ++|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~----------~-~~-~~i~~~-----~dl~~ll~-~~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG----------Q-GA-LGVAIT-----DDLEAVLA-DADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc----------c-CC-CCcccc-----CCHHHhcc-CCCE
Confidence 58999998 9999999998876 579999999986421110 0 00 111111 11234554 7999
Q ss_pred eeeccccCccccccccc---ccceEEEecCCCCCCH-HHHHHH---HhCCceEeccccc
Q 014463 299 LVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP-EADEIL---SKKGVVILPDIYA 350 (424)
Q Consensus 299 liPaA~~~~It~~na~~---i~akiIvEgAN~p~t~-eA~~iL---~~rGI~viPD~la 350 (424)
+|-|+..... .+++.. -+..+|++ ...+++ +++++. ++.++++.|.+.-
T Consensus 64 Vid~t~p~~~-~~~~~~al~~G~~vvig--ttG~s~~~~~~l~~aa~~~~v~~s~n~s~ 119 (257)
T PRK00048 64 LIDFTTPEAT-LENLEFALEHGKPLVIG--TTGFTEEQLAELEEAAKKIPVVIAPNFSI 119 (257)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEE--CCCCCHHHHHHHHHHhcCCCEEEECcchH
Confidence 9988865544 444443 25668877 334444 444333 3466778787643
No 81
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.89 E-value=0.044 Score=55.53 Aligned_cols=32 Identities=41% Similarity=0.652 Sum_probs=29.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~ 252 (424)
.||+|-|||..|+.+++.+.+++ .+||||.|.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~ 35 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL 35 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 58999999999999999998875 899999995
No 82
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.88 E-value=0.0069 Score=52.74 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=60.2
Q ss_pred CeEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 297 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 297 (424)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++..- -.|-|+.++..... . +.... +.++++.. +|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~~-----~---~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIGP-----L---GVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSST---------SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcCC-----c---ccccchhHHHhccc-CC
Confidence 48999999 9999999999987 899999999987621 23556655432210 0 11111 12455655 99
Q ss_pred eeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHHh
Q 014463 298 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSK 339 (424)
Q Consensus 298 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~~ 339 (424)
|+|-+.....+. +|++. -+..+|++=.- .+++-.+.|++
T Consensus 70 VvIDfT~p~~~~-~~~~~~~~~g~~~ViGTTG--~~~~~~~~l~~ 111 (124)
T PF01113_consen 70 VVIDFTNPDAVY-DNLEYALKHGVPLVIGTTG--FSDEQIDELEE 111 (124)
T ss_dssp EEEEES-HHHHH-HHHHHHHHHT-EEEEE-SS--SHHHHHHHHHH
T ss_pred EEEEcCChHHhH-HHHHHHHhCCCCEEEECCC--CCHHHHHHHHH
Confidence 999997443322 22222 26667664332 34444344444
No 83
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.84 E-value=0.022 Score=55.95 Aligned_cols=106 Identities=17% Similarity=0.258 Sum_probs=64.0
Q ss_pred CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 297 (424)
+||+|+|+|++|+..++.|.+. +.++++|+|.+ .+...+..++.+ .... +.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~----------~~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN----------LEKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC----------HHHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 4899999999999999988765 58899998875 233333332211 1122 335666 6899
Q ss_pred eeeeccccCccccccccc-c--cceEEEecC----CCCCCHHHHHHHHhCCceEe
Q 014463 298 VLVPCALGGVLNKENAAD-V--KAKFIIEAA----NHPTDPEADEILSKKGVVIL 345 (424)
Q Consensus 298 IliPaA~~~~It~~na~~-i--~akiIvEgA----N~p~t~eA~~iL~~rGI~vi 345 (424)
+++.|+..... .+.+.. + +..+|++.. +-+...+..+..+++|+.+.
T Consensus 64 vVvi~a~~~~~-~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~ 117 (265)
T PRK13304 64 LVVECASVNAV-EEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIY 117 (265)
T ss_pred EEEEcCChHHH-HHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEE
Confidence 99999854443 233222 2 345666532 22222334456777886543
No 84
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.81 E-value=0.12 Score=50.58 Aligned_cols=169 Identities=21% Similarity=0.315 Sum_probs=100.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc---cc--c
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VH--E 295 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll---~~--~ 295 (424)
+++-++|.|.+|.++++.|.+.|..|| +-|. |..++.+.+... ... +. +.++++ .. -
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV-~yD~----------n~~av~~~~~~g--a~~---a~--sl~el~~~L~~pr~ 62 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVV-GYDV----------NQTAVEELKDEG--ATG---AA--SLDELVAKLSAPRI 62 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEE-EEcC----------CHHHHHHHHhcC--Ccc---cc--CHHHHHHhcCCCcE
Confidence 357789999999999999999999999 4555 344555555432 111 10 112221 11 1
Q ss_pred cceeeecc-ccCcccccccccccc-eEEEecCCCCCC--HHHHHHHHhCCceEeccccccccCcchhh----------HH
Q 014463 296 CDVLVPCA-LGGVLNKENAADVKA-KFIIEAANHPTD--PEADEILSKKGVVILPDIYANSGGVTVSY----------FE 361 (424)
Q Consensus 296 ~DIliPaA-~~~~It~~na~~i~a-kiIvEgAN~p~t--~eA~~iL~~rGI~viPD~laNaGGVi~s~----------~E 361 (424)
+=+.+|++ +-+.+-++-++.+.+ .+|++|-|.-.- .+-.+.|.++||.++- .--|||+--.- -|
T Consensus 63 vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD--~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 63 VWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD--VGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred EEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe--ccCCCCchhhhcCceEEecCcHH
Confidence 23677886 333333344444443 699999999864 3444689999999874 46677773210 00
Q ss_pred Hhhhcc-----------ccCCC--------HHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHH
Q 014463 362 WVQNIQ-----------GFMWE--------EEKVNHELKRYMMSAFKDIKTMCQT--HNCNLRMGAFTL 409 (424)
Q Consensus 362 ~~qn~~-----------~~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~--~~~~~r~aA~~~ 409 (424)
-++.+. ++-.. -.-|...+|.-|-+++.+=++.-++ ++.++.+.|-++
T Consensus 141 a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW 209 (300)
T COG1023 141 AVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVW 209 (300)
T ss_pred HHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 001000 00000 1236667777888888887777665 566777777554
No 85
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.81 E-value=0.16 Score=45.58 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=42.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..|..|+.. +++++|.+++|++|.|.| -..||.-++.+|.++|+.|. +++++
T Consensus 9 p~t~~a~~~----ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 9 SPVAKAVKE----LLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred ccHHHHHHH----HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 466666554 456679999999999999 58899999999999999988 66764
No 86
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.72 E-value=0.025 Score=60.24 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=99.1
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc--C-CcccCCCCeeecCCcccc--cccc
Q 014463 223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN--K-SLNDFQGGNAMDLNDLLV--HECD 297 (424)
Q Consensus 223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g-~v~~~~~~~~i~~~~ll~--~~~D 297 (424)
|.|+|.|++|+++|+.|.++|.+|+ +.|.+ .+++.+..++. + .+..+ -+.+++.+ .+||
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~-v~drt----------~~~~~~l~~~~~~g~~~~~~-----~s~~e~v~~l~~~d 65 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVS-VYNRT----------PEKTDEFLAEHAKGKKIVGA-----YSIEEFVQSLERPR 65 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEE-EEeCC----------HHHHHHHHhhccCCCCceec-----CCHHHHHhhcCCCC
Confidence 7899999999999999999999977 55653 34444444331 1 11111 12234432 2589
Q ss_pred eeeeccccCcccccccc----cc-cceEEEecCCCC--CCHHHHHHHHhCCceEecccc------------ccccCcchh
Q 014463 298 VLVPCALGGVLNKENAA----DV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDIY------------ANSGGVTVS 358 (424)
Q Consensus 298 IliPaA~~~~It~~na~----~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~l------------aNaGGVi~s 358 (424)
+++-|...+...++.+. .+ .-++|+++.|.- .|.+..+.|.++||.++---+ .-.||=- .
T Consensus 66 vIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~-~ 144 (467)
T TIGR00873 66 KIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSA-E 144 (467)
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCH-H
Confidence 88877655443333332 23 347999999963 355555789999998863221 1122221 1
Q ss_pred hHHHhhhc----cc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 014463 359 YFEWVQNI----QG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 409 (424)
Q Consensus 359 ~~E~~qn~----~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 409 (424)
.||.++.+ .. ..| --.-|+.-++..+.+++.|.++..+ ..++++.+.+.++
T Consensus 145 a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~ 215 (467)
T TIGR00873 145 AWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVF 215 (467)
T ss_pred HHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 13333221 00 001 0123566677777788888888774 6888877655444
No 87
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.63 E-value=0.13 Score=55.65 Aligned_cols=108 Identities=28% Similarity=0.304 Sum_probs=68.0
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 294 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~ 294 (424)
|..+.|+||.|.|+|++|+.+|+.|...|++|++. |.+. +.+.. ... +.+..+.++++.
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~----~~~-------g~~~~~l~ell~- 193 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY-DPYI--------SPERA----AQL-------GVELVSLDELLA- 193 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHH----Hhc-------CCEEEcHHHHHh-
Confidence 34589999999999999999999999999999843 4321 11111 110 122334455553
Q ss_pred ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV 343 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~ 343 (424)
+||+++-|.- .+.|+.+....++ -.+++.-|-+++ +.+|- +.|++.-|.
T Consensus 194 ~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 250 (526)
T PRK13581 194 RADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVA 250 (526)
T ss_pred hCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCee
Confidence 7888887763 3345555555442 346777777774 54443 567666653
No 88
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.62 E-value=0.11 Score=52.86 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=27.9
Q ss_pred eEEEEecChHHHHHHHHHHHCC----CEEEEEEcCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~ 253 (424)
||+|.|||.+|+.+++.|.+.+ ..|++|.|..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~ 36 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA 36 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence 5899999999999999998764 8999998853
No 89
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.60 E-value=0.049 Score=50.59 Aligned_cols=123 Identities=23% Similarity=0.210 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
-|+.-.+..++..++++|.+++++++.|.|. |.+|+.+++.|.+.|++|+ +.+.+ .+++.+..+.-..
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~-l~~R~----------~~~~~~l~~~l~~ 74 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVV-LVGRD----------LERAQKAADSLRA 74 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHHHHh
Confidence 5777777888888888899999999999996 9999999999999999887 44443 2333333221100
Q ss_pred cccCCCCeee---cCCccc--ccccceeeeccccCcccccccc-ccc-ceEEEecCCCC-CCHH
Q 014463 277 LNDFQGGNAM---DLNDLL--VHECDVLVPCALGGVLNKENAA-DVK-AKFIIEAANHP-TDPE 332 (424)
Q Consensus 277 v~~~~~~~~i---~~~~ll--~~~~DIliPaA~~~~It~~na~-~i~-akiIvEgAN~p-~t~e 332 (424)
-.+. ..... +.+++. -.+||++|-|.-.+..+..... ..+ .++|++-+..| ++++
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~ 137 (194)
T cd01078 75 RFGE-GVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIE 137 (194)
T ss_pred hcCC-cEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCCcc
Confidence 0000 00111 112221 1479999988765542221122 122 36888866655 5664
No 90
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.079 Score=52.87 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=43.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+.|-.|++..+ ++.+.+++|++|+|.|.|+ ||+.++.+|.++|+.|. |+++
T Consensus 139 ~p~T~~gii~~L----~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVt-v~~~ 191 (283)
T PRK14192 139 GSATPAGIMRLL----KAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVT-ICHS 191 (283)
T ss_pred cCCcHHHHHHHH----HHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEE-EEeC
Confidence 367877776664 4578899999999999998 99999999999999554 8876
No 91
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.55 E-value=0.26 Score=53.33 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=88.8
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 293 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~ 293 (424)
|..+.|+||.|.|+|++|+.+|+.|...|++|++. |... +.+.. ... +.+.. +.++++
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~-d~~~--------~~~~~----~~~-------g~~~~~~l~ell- 191 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY-DPYI--------SPERA----EQL-------GVELVDDLDELL- 191 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CCCC--------ChhHH----Hhc-------CCEEcCCHHHHH-
Confidence 45699999999999999999999999999999853 4321 11111 111 11222 234555
Q ss_pred cccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-EeccccccccCcchhhHHHhh
Q 014463 294 HECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYANSGGVTVSYFEWVQ 364 (424)
Q Consensus 294 ~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~laNaGGVi~s~~E~~q 364 (424)
.+||+++-|.- .+.|+++....++ -.+++.-|=+++ +.+| .+.|++..|. ..=|...+=--. -+.+.-..
T Consensus 192 ~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~ 270 (525)
T TIGR01327 192 ARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPT-DNPLFDLD 270 (525)
T ss_pred hhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCC-CChhhcCC
Confidence 47899887763 3456555555542 347788888874 5444 3677777775 334443332211 12221112
Q ss_pred h---ccccCCCHHHHHHHHHHHHHHHHHHHH
Q 014463 365 N---IQGFMWEEEKVNHELKRYMMSAFKDIK 392 (424)
Q Consensus 365 n---~~~~~w~~e~v~~~l~~~m~~~~~~v~ 392 (424)
| ..|..|..++...++...+.+.+.+.+
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~ 301 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDAL 301 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 2 135556555556655554444444443
No 92
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.54 E-value=0.013 Score=51.74 Aligned_cols=72 Identities=22% Similarity=0.353 Sum_probs=42.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccccee
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVL 299 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIl 299 (424)
..||.|+|.|+||.++++.|.+.|..|++|...+ .....+... .++.....+.++++ .++|++
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs----------~~sa~~a~~------~~~~~~~~~~~~~~-~~aDlv 72 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRS----------PASAERAAA------FIGAGAILDLEEIL-RDADLV 72 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH----------H-HHHHHHC--------TT-----TTGGG-CC-SEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC----------ccccccccc------cccccccccccccc-ccCCEE
Confidence 4799999999999999999999999999886642 111111111 12222334445555 479999
Q ss_pred eeccccCcc
Q 014463 300 VPCALGGVL 308 (424)
Q Consensus 300 iPaA~~~~I 308 (424)
+-|.--+.|
T Consensus 73 ~iavpDdaI 81 (127)
T PF10727_consen 73 FIAVPDDAI 81 (127)
T ss_dssp EE-S-CCHH
T ss_pred EEEechHHH
Confidence 998655544
No 93
>PLN00203 glutamyl-tRNA reductase
Probab=95.53 E-value=0.48 Score=51.23 Aligned_cols=113 Identities=14% Similarity=0.192 Sum_probs=70.4
Q ss_pred HHHHHHHhCC-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463 207 TEALLAEHGK-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 285 (424)
Q Consensus 207 ~~~~~~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~ 285 (424)
++.+.+.++. ++.+++|.|.|.|.+|+.+++.|...|++-|.|.+.+ .+...++.++.+.. ....
T Consensus 252 v~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------~era~~La~~~~g~----~i~~ 317 (519)
T PLN00203 252 VELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------EERVAALREEFPDV----EIIY 317 (519)
T ss_pred HHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------HHHHHHHHHHhCCC----ceEe
Confidence 3333345564 5899999999999999999999999997544476664 33444444332111 0011
Q ss_pred ecCCccc--ccccceeeecc--ccCccccccccccc--------ceEEEecCCCC-CCHHH
Q 014463 286 MDLNDLL--VHECDVLVPCA--LGGVLNKENAADVK--------AKFIIEAANHP-TDPEA 333 (424)
Q Consensus 286 i~~~~ll--~~~~DIliPaA--~~~~It~~na~~i~--------akiIvEgAN~p-~t~eA 333 (424)
.+.+++. -.++||+|-|. ....|+.+.++.+. -+++++-|... +.|+.
T Consensus 318 ~~~~dl~~al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v 378 (519)
T PLN00203 318 KPLDEMLACAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACV 378 (519)
T ss_pred ecHhhHHHHHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcccc
Confidence 1222221 25799999885 35567877766542 24889888754 45544
No 94
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.47 E-value=0.3 Score=51.18 Aligned_cols=32 Identities=25% Similarity=0.415 Sum_probs=28.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.||..+|..|.++|..|++ .|.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeCC
Confidence 6899999999999999999999999984 4653
No 95
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.45 E-value=0.21 Score=49.50 Aligned_cols=135 Identities=19% Similarity=0.233 Sum_probs=79.7
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK 275 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g 275 (424)
.-|+|-.+.-+.+.++++|++++..+|+|.|. |.+|+.+++.|..++.++.-+- . + .+-.+.+.|..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~-r-~----aea~~rq~l~~------ 211 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLL-R-D----AEARNRQRLTL------ 211 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEec-c-c----HHhhhhhhhhh------
Confidence 36888888888888889999999999999997 9999999999998888776442 1 1 01111111111
Q ss_pred CcccCCCCe-eecCCcccccccceeeeccc--cCcccccccccccceEEEecCCCCCCHHHHHHHHhCC-ceEecccc
Q 014463 276 SLNDFQGGN-AMDLNDLLVHECDVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG-VVILPDIY 349 (424)
Q Consensus 276 ~v~~~~~~~-~i~~~~ll~~~~DIliPaA~--~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rG-I~viPD~l 349 (424)
+..-++.. .++.+.-+-.+.|+++-|+. +..|+++-.+. .| +|++++- |- +.+..-+..| |.++|.=+
T Consensus 212 -l~e~~~~~~i~s~d~~~~~e~i~v~vAs~~~g~~I~pq~lkp-g~-~ivD~g~-P~--dvd~~vk~~~~V~Ii~GGl 283 (351)
T COG5322 212 -LQEELGRGKIMSLDYALPQEDILVWVASMPKGVEIFPQHLKP-GC-LIVDGGY-PK--DVDTSVKNVGGVRIIPGGL 283 (351)
T ss_pred -cccccCCCeeeeccccccccceEEEEeecCCCceechhhccC-Ce-EEEcCCc-Cc--ccccccccCCCeEEecCcc
Confidence 11112333 33443333333444445554 45677766654 34 6666653 21 1122234444 77776433
No 96
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.44 E-value=0.05 Score=54.75 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=45.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.|..|++.. +++.|.+++|++|+|+|-| .||..+|.+|.++|+.|. +++++
T Consensus 139 ~PcTp~aii~l----L~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCLRL----LEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 36898887665 5566899999999999995 999999999999999987 77654
No 97
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.40 E-value=0.24 Score=49.36 Aligned_cols=132 Identities=16% Similarity=0.114 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 278 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~ 278 (424)
=+.|+..+++. .+.++++++|.|.|.|.+|+.++..|.+.|++=|.|.|.+ .++..++.+.-+ .
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------~~ka~~la~~l~--~ 173 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------PARAAALADELN--A 173 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------HHHHHHHHHHHH--h
Confidence 37788777753 3346788999999999999999999999998545588874 233333322110 0
Q ss_pred cCCCCeeecCCccc--ccccceeeeccccCcc-ccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463 279 DFQGGNAMDLNDLL--VHECDVLVPCALGGVL-NKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP 346 (424)
Q Consensus 279 ~~~~~~~i~~~~ll--~~~~DIliPaA~~~~I-t~~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP 346 (424)
.++.......+++. -.++||+|-|.--+.- ++. +...+ ...+|.+-.-+|....--+.-+++|..++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 174 RFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGCRTLD 248 (284)
T ss_pred hCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEec
Confidence 11111222222221 1469999987422210 000 11112 345788888888543444566778877544
No 98
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.39 E-value=0.049 Score=54.39 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..|++.. +++++.+++|++++|.|-++ ||.-++.+|.++|+.|. +++++- ..|.+
T Consensus 139 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~T----------~~l~~----- 198 (285)
T PRK10792 139 RPCTPRGIMTL----LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRFT----------KNLRH----- 198 (285)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECCC----------CCHHH-----
Confidence 47899888765 55678999999999999988 99999999999999887 777641 00111
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAA 325 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgA 325 (424)
....+||+|-|.. .+.|+.+.++. . .+|++.+
T Consensus 199 -----------------~~~~ADIvi~avG~p~~v~~~~vk~-g-avVIDvG 231 (285)
T PRK10792 199 -----------------HVRNADLLVVAVGKPGFIPGEWIKP-G-AIVIDVG 231 (285)
T ss_pred -----------------HHhhCCEEEEcCCCcccccHHHcCC-C-cEEEEcc
Confidence 1346788888874 56677766654 3 3444444
No 99
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.37 E-value=0.07 Score=53.15 Aligned_cols=167 Identities=13% Similarity=0.196 Sum_probs=92.5
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV 300 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli 300 (424)
+|.|+|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+.. .... ++.++. .+||++|
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~----------~~~~~~~~~~g--------~~~~~s~~~~~-~~aDvVi 62 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN----------PQAVDALVDKG--------ATPAASPAQAA-AGAEFVI 62 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CcccCCHHHHH-hcCCEEE
Confidence 79999999999999999999999876 55653 33343333321 1111 223333 4789999
Q ss_pred eccccCc-----cccc--ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccc-------cccccCcc--h----
Q 014463 301 PCALGGV-----LNKE--NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDI-------YANSGGVT--V---- 357 (424)
Q Consensus 301 PaA~~~~-----It~~--na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~-------laNaGGVi--~---- 357 (424)
-|--... +... -.+.+ +-++|++-...+. +.+..+.+.++|+.++ |. -+..|-.+ +
T Consensus 63 ~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l-dapV~g~~~~a~~g~l~~~~gg~~ 141 (296)
T PRK15461 63 TMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM-DVPVGRTSDNAITGTLLLLAGGTA 141 (296)
T ss_pred EecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE-EccCCCCHHHHHhCcEEEEECCCH
Confidence 8865442 2211 11223 3467777777653 4566678999998866 21 11222111 1
Q ss_pred hhHHHhhh----cc-ccCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463 358 SYFEWVQN----IQ-GFMWEE--------EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 409 (424)
Q Consensus 358 s~~E~~qn----~~-~~~w~~--------e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 409 (424)
..||.++. +. ..++-. .-++.-+...+...+.|.+..+++.|+++.....++
T Consensus 142 ~~~~~~~p~l~~~g~~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l 206 (296)
T PRK15461 142 EQVERATPILMAMGNELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206 (296)
T ss_pred HHHHHHHHHHHHHcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 11332221 11 111110 112233333445566778888999999987755443
No 100
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.37 E-value=0.065 Score=49.11 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=39.7
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 195 REAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
-.+.|..|++.. +++.+.+++|++++|.|-+ .||.-++.+|.++|+.|. +++++
T Consensus 15 ~~PcTp~aii~l----L~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~ 69 (160)
T PF02882_consen 15 FVPCTPLAIIEL----LEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK 69 (160)
T ss_dssp S--HHHHHHHHH----HHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred CcCCCHHHHHHH----HHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence 346898888766 4567889999999999976 599999999999999987 77774
No 101
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.30 E-value=0.05 Score=58.35 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=102.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh---cCCcccCCCCeeecCCccccc--c
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS---NKSLNDFQGGNAMDLNDLLVH--E 295 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~---~g~v~~~~~~~~i~~~~ll~~--~ 295 (424)
.+|.++|.|++|+++|+.|.++|.+|+ |.|.+ .++..++.+. .|. ..+..+ -+.+++.+. .
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt----------~~k~~~l~~~~~~~Ga-~~~~~a--~s~~e~v~~l~~ 72 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKKEGN-LPLYGF--KDPEDFVLSIQK 72 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhhhcCC-cccccC--CCHHHHHhcCCC
Confidence 369999999999999999999999987 77764 3344333331 111 100001 123444432 5
Q ss_pred cceeeeccccCcccccc----cccc-cceEEEecCCCC--CCHHHHHHHHhCCceEeccc------------cccccCcc
Q 014463 296 CDVLVPCALGGVLNKEN----AADV-KAKFIIEAANHP--TDPEADEILSKKGVVILPDI------------YANSGGVT 356 (424)
Q Consensus 296 ~DIliPaA~~~~It~~n----a~~i-~akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~------------laNaGGVi 356 (424)
||++|-|-..+...++. .+.+ .-++|+++.|.. .|.+..+.++++|+.++=-- ..-.||=-
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~ 152 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSF 152 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCH
Confidence 89998886544332222 2333 457999999985 46666788999999887211 11223321
Q ss_pred hhhHHHhhh----ccc-------cCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH
Q 014463 357 VSYFEWVQN----IQG-------FMW--------EEEKVNHELKRYMMSAFKDIKTMCQT-HNCNLRMGAFT 408 (424)
Q Consensus 357 ~s~~E~~qn----~~~-------~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~~-~~~~~r~aA~~ 408 (424)
. .||-++. +.. ..| --.-|+.-++..+.+.+.|.+..+++ .|+++.+.+.+
T Consensus 153 ~-a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~v 223 (493)
T PLN02350 153 E-AYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEV 223 (493)
T ss_pred H-HHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 1 1232221 110 111 11236666777777888888888888 59988776655
No 102
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.30 E-value=0.38 Score=47.51 Aligned_cols=131 Identities=15% Similarity=0.203 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
-.+.|...+++. ..+.+++++++.|.|.|.+|+.++..|.+.| .+|+ |.+.+ .+++.+..++...
T Consensus 104 TD~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~----------~~~a~~l~~~~~~ 169 (278)
T PRK00258 104 TDGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT----------VERAEELAKLFGA 169 (278)
T ss_pred ccHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC----------HHHHHHHHHHhhh
Confidence 346676666542 2466789999999999999999999999999 5555 77774 2333333332211
Q ss_pred cccCCCCee-ecCCcccccccceeeeccccCccc-----ccccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463 277 LNDFQGGNA-MDLNDLLVHECDVLVPCALGGVLN-----KENAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP 346 (424)
Q Consensus 277 v~~~~~~~~-i~~~~ll~~~~DIliPaA~~~~It-----~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP 346 (424)
.. .... .+..+.+ .++||+|=|.-.+.-. +-....+ .-.+|++-.-+|..-.--+.-+++|+.++.
T Consensus 170 ~~---~~~~~~~~~~~~-~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 170 LG---KAELDLELQEEL-ADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGARTID 242 (278)
T ss_pred cc---ceeecccchhcc-ccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcCeecC
Confidence 10 0011 1111112 4689999776433321 1111223 246888888888533344556778877544
No 103
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.27 E-value=0.1 Score=52.16 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=67.7
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463 195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 273 (424)
Q Consensus 195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~ 273 (424)
-.+.|.+|++.. +++++.+++|++++|.| ...||.-++.+|.++++.|. +++++.. |+. +
T Consensus 138 ~~PcTp~avi~l----l~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T~-------~l~---~---- 198 (284)
T PRK14177 138 YLPCTPYGMVLL----LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKTQ-------NLP---S---- 198 (284)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H----
Confidence 347899988764 55679999999999999 57899999999999999987 8876420 111 0
Q ss_pred cCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 274 ~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus 199 ------------------~~~~ADIvIsAvGk~~~i~~~~ik~-gavVIDvGin 233 (284)
T PRK14177 199 ------------------IVRQADIIVGAVGKPEFIKADWISE-GAVLLDAGYN 233 (284)
T ss_pred ------------------HHhhCCEEEEeCCCcCccCHHHcCC-CCEEEEecCc
Confidence 2347888887764 66777777665 4444444444
No 104
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.22 E-value=0.11 Score=47.13 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.0
Q ss_pred CeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~ 253 (424)
.||+|-|||.+|+.+++.+. +....||+|.|..
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 37999999999999999887 5668999999874
No 105
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.19 E-value=0.061 Score=53.72 Aligned_cols=52 Identities=21% Similarity=0.300 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChH-HHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNV-GSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~GakVVaVsD~ 252 (424)
.+.|..|++.. +++++++++|++|+|.|.|++ |+-++.+|.++|+.|. ++++
T Consensus 138 ~PcTp~aii~l----L~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 138 RPCTPYGVMKM----LESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred cCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 46888887655 567799999999999998777 9999999999999987 5554
No 106
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.15 E-value=0.11 Score=51.66 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=62.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+.|..|++.. +++++.+++|++++|+| ...||.-++.+|.++++.|. +++++.. |+. +
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T~-------~l~---~----- 197 (278)
T PRK14172 138 LPCTPNSVITL----IKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKTK-------NLK---E----- 197 (278)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H-----
Confidence 46898888665 56678999999999999 57899999999999999886 8876420 111 1
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+...+||+|-|+. .+.|+.+.++.
T Consensus 198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~ 222 (278)
T PRK14172 198 -----------------VCKKADILVVAIGRPKFIDEEYVKE 222 (278)
T ss_pred -----------------HHhhCCEEEEcCCCcCccCHHHcCC
Confidence 2346888888875 66777777664
No 107
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.05 E-value=0.087 Score=52.54 Aligned_cols=170 Identities=17% Similarity=0.214 Sum_probs=94.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc--ccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH--ECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~--~~D 297 (424)
++|.|+|+|++|+..++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +++++.+. .+|
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~----------~~~~~~~~~~-g-------~~~~~s~~~~~~~~~~ad 61 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVV-GYDVN----------QEAVDVAGKL-G-------ITARHSLEELVSKLEAPR 61 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC----------HHHHHHHHHC-C-------CeecCCHHHHHHhCCCCC
Confidence 379999999999999999999999987 66663 2333333221 1 1111 23344432 278
Q ss_pred eeeeccccCcccccc----cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEecccc------ccccC-cchh----h
Q 014463 298 VLVPCALGGVLNKEN----AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIY------ANSGG-VTVS----Y 359 (424)
Q Consensus 298 IliPaA~~~~It~~n----a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~l------aNaGG-Vi~s----~ 359 (424)
+++-|--.....++- .+.+ .-++|++-++. | .+.+..+.+.++|+.++---+ +-.|= +.++ .
T Consensus 62 vVi~~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~ 141 (299)
T PRK12490 62 TIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEI 141 (299)
T ss_pred EEEEEecCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHH
Confidence 888775443222222 2223 23588888776 4 345556789999998763111 11110 1111 1
Q ss_pred HHHhhh----ccc----cCCC--------HHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q 014463 360 FEWVQN----IQG----FMWE--------EEKVNHELKRYMMSAFKDIKTMCQTHN--CNLRMGAFTL 409 (424)
Q Consensus 360 ~E~~qn----~~~----~~w~--------~e~v~~~l~~~m~~~~~~v~~~a~~~~--~~~r~aA~~~ 409 (424)
|+.++. +.. .++- -.-++.-+.-.+..++.|.+..+++.+ +++.+...++
T Consensus 142 ~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~ 209 (299)
T PRK12490 142 YDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLW 209 (299)
T ss_pred HHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHH
Confidence 233322 111 1110 122444455555677788888899988 8877665554
No 108
>PRK06349 homoserine dehydrogenase; Provisional
Probab=94.95 E-value=0.069 Score=56.17 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=82.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHC----------CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEH----------GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DL 288 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~----------GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~ 288 (424)
..+|+|.|+|+||+.+++.|.++ +.+|++|+|++.... .+++ +++.... +.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence 46899999999999999988543 478999999863211 1111 1111111 23
Q ss_pred Ccccc-cccceeeeccccCccccccc-ccccc--eEEEecCCCCC-CH---HHHHHHHhCCceEeccccccccCc--chh
Q 014463 289 NDLLV-HECDVLVPCALGGVLNKENA-ADVKA--KFIIEAANHPT-DP---EADEILSKKGVVILPDIYANSGGV--TVS 358 (424)
Q Consensus 289 ~~ll~-~~~DIliPaA~~~~It~~na-~~i~a--kiIvEgAN~p~-t~---eA~~iL~~rGI~viPD~laNaGGV--i~s 358 (424)
++++. .++|+++.|.-+...+.+-+ .-+++ -+|++ |-+. .. +-.+..+++|+.+.-.- +-.||+ +-.
T Consensus 65 ~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta--NK~~~a~~~~eL~~lA~~~gv~l~fEa-sV~ggiPii~~ 141 (426)
T PRK06349 65 EELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA--NKALLAVHGAELFAAAEEKGVDLYFEA-AVAGGIPIIKA 141 (426)
T ss_pred HHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc--CHHHHHHHHHHHHHHHHHcCCcEEEEE-EeeccCchHHH
Confidence 56664 57999999964433333333 12333 34443 4332 22 22345668888655221 122232 111
Q ss_pred hHHHhhh--cccc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014463 359 YFEWVQN--IQGF----MWEEEKVNHELKRYMMSAFKDIKTMCQTHNC 400 (424)
Q Consensus 359 ~~E~~qn--~~~~----~w~~e~v~~~l~~~m~~~~~~v~~~a~~~~~ 400 (424)
--+.+.. +... .=+-.-+..++.+. ...|.+++..|++.|.
T Consensus 142 l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~-g~~f~~al~~Aq~~Gy 188 (426)
T PRK06349 142 LREGLAANRITRVMGIVNGTTNYILTKMTEE-GLSFEDALKEAQRLGY 188 (426)
T ss_pred HHhhcccCCeeEEEEEEeCcHHHHHhhhhhc-CCCHHHHHHHHHHcCC
Confidence 1122111 0000 00223344444321 4578999999998875
No 109
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.94 E-value=0.064 Score=54.20 Aligned_cols=107 Identities=20% Similarity=0.321 Sum_probs=68.9
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
++.|+||.|.|+|++|+.+|++|...|++|++. |..+ +++.. +..+-++++ ..+
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~-~~~~---~~~~~---------------------~~~~l~ell-~~s 198 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIG-QLPG---RPARP---------------------DRLPLDELL-PQV 198 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CCCC---Ccccc---------------------cccCHHHHH-HhC
Confidence 589999999999999999999999999999864 3321 11110 011223444 367
Q ss_pred ceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce-Eecccc
Q 014463 297 DVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV-ILPDIY 349 (424)
Q Consensus 297 DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~-viPD~l 349 (424)
|+++-+.- .+.|+++...+++ --+++.-|=+++ ..+|- +.|++.-|. ..=|+.
T Consensus 199 Div~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf 260 (317)
T PRK06487 199 DALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVL 260 (317)
T ss_pred CEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 88886653 3456666666664 357777788874 44443 567766664 334443
No 110
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.12 Score=51.68 Aligned_cols=91 Identities=21% Similarity=0.202 Sum_probs=65.5
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..||+.. +++.+.+++|++|+|.| ...||+-++.+|.++++.|. ++.++- + | |.+
T Consensus 137 ~PcTp~avi~l----L~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~T----~---n---l~~----- 196 (282)
T PRK14166 137 LPCTPLGVMKL----LKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIKT----K---D---LSL----- 196 (282)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---C---HHH-----
Confidence 46899888765 45578999999999999 57799999999999999987 777631 0 1 111
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEec
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEA 324 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEg 324 (424)
+...+||+|-|+. .+.|+.+.++. .|-+|=-|
T Consensus 197 -----------------~~~~ADIvIsAvGkp~~i~~~~vk~-GavVIDvG 229 (282)
T PRK14166 197 -----------------YTRQADLIIVAAGCVNLLRSDMVKE-GVIVVDVG 229 (282)
T ss_pred -----------------HHhhCCEEEEcCCCcCccCHHHcCC-CCEEEEec
Confidence 2357899998875 66778776664 34333333
No 111
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.89 E-value=0.15 Score=50.94 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=65.9
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh
Q 014463 195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS 273 (424)
Q Consensus 195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~ 273 (424)
..++|.+|++.. +++++.+++|++++|+| ...||.-++.+|.++++.|. ++.++. -|+. +
T Consensus 135 ~~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~T-------~~l~---~---- 195 (282)
T PRK14169 135 VVASTPYGIMAL----LDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSKT-------RNLK---Q---- 195 (282)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCCC-------CCHH---H----
Confidence 347999888765 55679999999999999 57799999999999999987 776642 0111 1
Q ss_pred cCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 274 NKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 274 ~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus 196 ------------------~~~~ADIvI~AvG~p~~i~~~~vk~-GavVIDvGin 230 (282)
T PRK14169 196 ------------------LTKEADILVVAVGVPHFIGADAVKP-GAVVIDVGIS 230 (282)
T ss_pred ------------------HHhhCCEEEEccCCcCccCHHHcCC-CcEEEEeecc
Confidence 2346788888774 66677766654 4433333333
No 112
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.87 E-value=0.058 Score=55.04 Aligned_cols=91 Identities=20% Similarity=0.278 Sum_probs=53.7
Q ss_pred EEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc--CCcccCCC-------Ce-ee--cCC
Q 014463 223 FAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN--KSLNDFQG-------GN-AM--DLN 289 (424)
Q Consensus 223 vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g~v~~~~~-------~~-~i--~~~ 289 (424)
|+|.|||.+|+.+++.+.+ .+.+||||+|.+ .+......+.. .+...++. .. .+ +.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~----------~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~e 70 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS----------PDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLE 70 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC----------hHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHH
Confidence 5899999999999998764 578999999953 22222222211 11111111 00 11 234
Q ss_pred cccccccceeeeccccCcccccccccc---cceEEEecC
Q 014463 290 DLLVHECDVLVPCALGGVLNKENAADV---KAKFIIEAA 325 (424)
Q Consensus 290 ~ll~~~~DIliPaA~~~~It~~na~~i---~akiIvEgA 325 (424)
+++ .+||++++|. +...+..|++.+ ++|.|.-|+
T Consensus 71 eLl-~~vDiVve~T-p~~~~~~na~~~~~~GakaVl~~~ 107 (333)
T TIGR01546 71 DLL-EKVDIVVDAT-PGGIGAKNKPLYEKAGVKAIFQGG 107 (333)
T ss_pred HHh-hcCCEEEECC-CCCCChhhHHHHHhCCcCEEEECC
Confidence 565 4799999995 556666666543 555555443
No 113
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.87 E-value=0.36 Score=50.77 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=28.5
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 252 (424)
.||+|.|||..|+.+++.+.+ .+.+||+|-|.
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp 118 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDP 118 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCC
Confidence 499999999999999999875 68999999774
No 114
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.87 E-value=0.1 Score=52.19 Aligned_cols=52 Identities=29% Similarity=0.272 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++|..|++.. +++++.+++|++|+|.|-| .||..+|.+|.++|+.|. ++++
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs 189 (285)
T PRK14191 137 VPATPMGVMRL----LKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI 189 (285)
T ss_pred CCCcHHHHHHH----HHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence 47899888665 5567899999999999988 999999999999999986 7765
No 115
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=94.86 E-value=0.33 Score=49.64 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHHC----CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH----GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~----GakVVaVsD~ 252 (424)
.+|+|.|||.+|+.+.+.|.+. ..++++|-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4799999999999999999874 5789988764
No 116
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.84 E-value=0.43 Score=48.55 Aligned_cols=108 Identities=24% Similarity=0.361 Sum_probs=70.7
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 294 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~ 294 (424)
|.++.|+|+.|.|+|.+|+.+|+.+.-.|++|+ ..|.+. . ++.. +.. +...++.++++ .
T Consensus 141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~~~-------~--~~~~----~~~------~~~y~~l~ell-~ 199 (324)
T COG1052 141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDRSP-------N--PEAE----KEL------GARYVDLDELL-A 199 (324)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECCCC-------C--hHHH----hhc------CceeccHHHHH-H
Confidence 457999999999999999999999999999998 445432 1 1110 000 12334444555 4
Q ss_pred ccceeeeccc-----cCcccccccccccc-eEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVKA-KFIIEAANHPT-DPEA-DEILSKKGVV 343 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~a-kiIvEgAN~p~-t~eA-~~iL~~rGI~ 343 (424)
++|+++-..- .+.||.+-..+.+- -+++.-|=+++ +.+| .+.|++.-|.
T Consensus 200 ~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 200 ESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred hCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7888876552 33455555555543 58888888885 4444 4678877665
No 117
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.81 E-value=0.11 Score=55.84 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..+.+|+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 468999999999999999999999999866 67764
No 118
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.80 E-value=0.13 Score=51.70 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=61.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..|++. ++++.+.+++|++++|.| ...||.-++.+|.++++.|. +++++. + | |.+
T Consensus 140 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T----~---~---l~~----- 199 (294)
T PRK14187 140 IPCTPKGCLY----LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT----R---D---LAD----- 199 (294)
T ss_pred cCcCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC----C---C---HHH-----
Confidence 3689988765 456679999999999999 57799999999999999987 777642 0 1 111
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+...+||+|-|.. .+.|+.+.++.
T Consensus 200 -----------------~~~~ADIvVsAvGkp~~i~~~~ik~ 224 (294)
T PRK14187 200 -----------------YCSKADILVAAVGIPNFVKYSWIKK 224 (294)
T ss_pred -----------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 2347788888774 56677766664
No 119
>PRK08328 hypothetical protein; Provisional
Probab=94.78 E-value=0.025 Score=54.56 Aligned_cols=119 Identities=19% Similarity=0.237 Sum_probs=66.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH-hcCCcccCCCCeeecCCccccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK-SNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~-~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
+++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+ =++...|-+..- ....+...+.++ ...+.+.+...
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D-------~ve~sNL~Rq~l~~~~dvG~~~k~~-~a~~~l~~~np 96 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ-------TPELSNLNRQILHWEEDLGKNPKPL-SAKWKLERFNS 96 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-------ccChhhhccccccChhhcCchHHHH-HHHHHHHHhCC
Confidence 677899999999999999999999997666577753 222222221100 000000000000 00112333444
Q ss_pred ceeeeccccCcccccccccc--cceEEEecCCCCCCHH-HHHHHHhCCceEe
Q 014463 297 DVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPE-ADEILSKKGVVIL 345 (424)
Q Consensus 297 DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~e-A~~iL~~rGI~vi 345 (424)
|+-|-+ ....++++|+..+ ++.+|+++.-++.|.. ..+...++||.++
T Consensus 97 ~v~v~~-~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 97 DIKIET-FVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred CCEEEE-EeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 555555 3334677776553 6678888765554332 2345678888765
No 120
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.11 Score=52.22 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++|..|++.. +++.+.+++|++|+|.| .|.||..+|.+|.+.|+.|+ ++++
T Consensus 138 ~PcTp~ai~~l----l~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~ 190 (296)
T PRK14188 138 VPCTPLGCMML----LRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS 190 (296)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence 47898888765 55578899999999999 99999999999999999987 6654
No 121
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.66 E-value=0.4 Score=46.58 Aligned_cols=171 Identities=15% Similarity=0.114 Sum_probs=85.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEE--EEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKV--VAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakV--VaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 297 (424)
++|.|+|+|++|+.+++.|.+.|..+ +.++|.+ .+.+.++.+.. ++.... ++.++. .+||
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~----------~~~~~~l~~~~------~~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN----------AQIAARLAERF------PKVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCC----------HHHHHHHHHHc------CCceEeCCHHHHH-HhCC
Confidence 37999999999999999998887532 3355542 34444433322 122222 223443 4689
Q ss_pred eeeeccccCcccccccccc---cceEEEecCCCCCCHH-HHHHHHh--CCceEeccccc-cccCcch--hhHHHhhh---
Q 014463 298 VLVPCALGGVLNKENAADV---KAKFIIEAANHPTDPE-ADEILSK--KGVVILPDIYA-NSGGVTV--SYFEWVQN--- 365 (424)
Q Consensus 298 IliPaA~~~~It~~na~~i---~akiIvEgAN~p~t~e-A~~iL~~--rGI~viPD~la-NaGGVi~--s~~E~~qn--- 365 (424)
+++-|.-...+. +-+..+ +-++|+.-+ .+++.+ ..+.+.. +-+.++|-.-. ...|++. ...++++.
T Consensus 64 vVilav~p~~~~-~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~~~~~~~l~~ 141 (258)
T PRK06476 64 VVFLAVRPQIAE-EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPPDPFVAALFD 141 (258)
T ss_pred EEEEEeCHHHHH-HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCCHHHHHHHHH
Confidence 999887643331 111111 224555544 455544 3444433 23455564222 2334433 11233332
Q ss_pred -ccccCC--CHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463 366 -IQGFMW--EEEKVNHE-----LKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 410 (424)
Q Consensus 366 -~~~~~w--~~e~v~~~-----l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 410 (424)
+....| +++..+.- .-..+...+++..+.+++.|++..+|-.++.
T Consensus 142 ~lG~~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 142 ALGTAVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred hcCCcEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222222 12222211 1122234556666777888998887765544
No 122
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.19 Score=50.55 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=65.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..|++.. ++++|.+++|++++|+| ..-||.-++.+|.++|+.|. ++.++.. |+. +
T Consensus 138 ~PcTp~aii~l----L~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~T~-------~l~---~----- 197 (297)
T PRK14186 138 RSCTPAGVMRL----LRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSRTQ-------DLA---S----- 197 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCCC-------CHH---H-----
Confidence 36888887655 56679999999999999 57799999999999999987 7765310 111 1
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus 198 -----------------~~~~ADIvIsAvGkp~~i~~~~ik~-gavVIDvGin 232 (297)
T PRK14186 198 -----------------ITREADILVAAAGRPNLIGAEMVKP-GAVVVDVGIH 232 (297)
T ss_pred -----------------HHhhCCEEEEccCCcCccCHHHcCC-CCEEEEeccc
Confidence 2346888888774 66677776665 4433333334
No 123
>PRK08223 hypothetical protein; Validated
Probab=94.64 E-value=0.028 Score=56.21 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|+|.|.|-+|+.+++.|...|..=+.+.|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 778999999999999999999999998666687764
No 124
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.63 E-value=0.2 Score=50.48 Aligned_cols=54 Identities=20% Similarity=0.149 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 195 REAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 195 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
-.++|..||+.. +++.|.+++|++++|+| ...||.-++.+|.++++.|. ++.++
T Consensus 146 ~~PcTp~avi~l----L~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 146 FLPCTPKGCLEL----LSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 357999997665 45679999999999999 57799999999999999987 77763
No 125
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.63 E-value=0.1 Score=52.09 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=44.7
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+.|..||+.. +++.+.+++|++++|+|- |.||.-+|.+|.++|+.|+ ++.+
T Consensus 138 ~PcTp~avi~l----L~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 138 IPCTPAGIMEM----FREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 47899988655 556799999999999998 9999999999999999987 6644
No 126
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.63 E-value=0.45 Score=48.58 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=27.8
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 252 (424)
.||+|-|||-+|+.++|.+.+ ....||||-|.
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~ 35 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL 35 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence 489999999999999998764 46999999874
No 127
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.62 E-value=0.26 Score=51.32 Aligned_cols=118 Identities=28% Similarity=0.380 Sum_probs=71.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC---------CceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT---------GAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL 291 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~---------G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l 291 (424)
.|++|+|.|-||.-+|-.+..+|.+|+++ |.+ |..|=.+ .+.+++++-..+.|.+. ..++-+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr------aTtd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR------ATTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce------EecChhh
Confidence 79999999999999999999999999986 654 3333111 23444333333333332 1222233
Q ss_pred cccccceeeeccccCccccc---------cc-ccc------cceEEEecCCCC-CCHHHHH-HHHhCCceEec-cc
Q 014463 292 LVHECDVLVPCALGGVLNKE---------NA-ADV------KAKFIIEAANHP-TDPEADE-ILSKKGVVILP-DI 348 (424)
Q Consensus 292 l~~~~DIliPaA~~~~It~~---------na-~~i------~akiIvEgAN~p-~t~eA~~-iL~~rGI~viP-D~ 348 (424)
++ +||++|=|- +.-++.. |+ +.| ..=+|.|..=-| +|.+--+ +|+++.-+..| ||
T Consensus 82 l~-~~dv~iI~V-PTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df 155 (436)
T COG0677 82 LK-ECDVFIICV-PTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF 155 (436)
T ss_pred cc-cCCEEEEEe-cCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee
Confidence 44 999998773 3333322 11 111 556899999888 6777665 56664544443 54
No 128
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.62 E-value=0.19 Score=50.34 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=44.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.|.+|++.. +++++.+++|++++|+| ...||.-++.+|.++++.|. ++.++
T Consensus 135 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 135 EPCTPAGVVRL----LKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 47899888765 55779999999999999 57899999999999999887 77653
No 129
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=94.60 E-value=0.42 Score=48.73 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=27.1
Q ss_pred eEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 252 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 252 (424)
||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 589999999999999998765 5899999874
No 130
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.56 E-value=0.099 Score=54.39 Aligned_cols=126 Identities=18% Similarity=0.216 Sum_probs=76.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC------cccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN------DLLV 293 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~------~ll~ 293 (424)
++|.|.|.|.||+.+|..|.+.| .+|. |+|.+ .+++.+.....+. .. .+..++-. ++++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs----------~~~~~~i~~~~~~--~v-~~~~vD~~d~~al~~li~ 67 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS----------KEKCARIAELIGG--KV-EALQVDAADVDALVALIK 67 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC----------HHHHHHHHhhccc--cc-eeEEecccChHHHHHHHh
Confidence 57999999999999999999998 7776 88874 3455554443221 10 01112211 2333
Q ss_pred cccceeeeccccCccccccccc-ccce-EEEecCCCCC-CHHHHHHHHhCCceEeccccccccCcchhhHHHh
Q 014463 294 HECDVLVPCALGGVLNKENAAD-VKAK-FIIEAANHPT-DPEADEILSKKGVVILPDIYANSGGVTVSYFEWV 363 (424)
Q Consensus 294 ~~~DIliPaA~~~~It~~na~~-i~ak-iIvEgAN~p~-t~eA~~iL~~rGI~viPD~laNaGGVi~s~~E~~ 363 (424)
+.|+.|-|+.+. ++..-++. ++++ -.+.-+|..- .-+-++...+.||.++|+. --+-|++..+....
T Consensus 68 -~~d~VIn~~p~~-~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~-G~dPGi~nv~a~~a 137 (389)
T COG1748 68 -DFDLVINAAPPF-VDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGC-GFDPGITNVLAAYA 137 (389)
T ss_pred -cCCEEEEeCCch-hhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEccc-CcCcchHHHHHHHH
Confidence 449999887644 23322211 2332 2455566543 3455678999999999985 45567777665443
No 131
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.56 E-value=0.099 Score=49.33 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.++.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3788999999999999999999999997544577865
No 132
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.50 E-value=0.57 Score=46.52 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHhCC--CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCC
Q 014463 199 TGLGVFFATEALLAEHGK--SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKS 276 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~ 276 (424)
=+.|...+++. .+. +++++++.|.|.|.+|+.++..|.+.|++-|.|.+.+ .++..++.++-+.
T Consensus 106 D~~G~~~~l~~----~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------~~ka~~La~~~~~ 171 (282)
T TIGR01809 106 DWDGIAGALAN----IGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------PDKLSRLVDLGVQ 171 (282)
T ss_pred CHHHHHHHHHh----hCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------HHHHHHHHHHhhh
Confidence 36777777653 342 4789999999999999999999999998656688764 2333333332111
Q ss_pred cccCCCCeeecC-Cccc--ccccceeeeccc-cCcccccccc---------cc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463 277 LNDFQGGNAMDL-NDLL--VHECDVLVPCAL-GGVLNKENAA---------DV-KAKFIIEAANHPTDPEADEILSKKGV 342 (424)
Q Consensus 277 v~~~~~~~~i~~-~~ll--~~~~DIliPaA~-~~~It~~na~---------~i-~akiIvEgAN~p~t~eA~~iL~~rGI 342 (424)
.. ....++. +++. -.++|++|=|.- +..++.+... ++ +..++.+..-+|....--+.-+++|.
T Consensus 172 ~~---~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~ 248 (282)
T TIGR01809 172 VG---VITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVSAAGW 248 (282)
T ss_pred cC---cceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHHHCCC
Confidence 00 0111111 2211 146899997753 3334433221 11 23577888877742223344556776
Q ss_pred eEe
Q 014463 343 VIL 345 (424)
Q Consensus 343 ~vi 345 (424)
.++
T Consensus 249 ~~~ 251 (282)
T TIGR01809 249 RVI 251 (282)
T ss_pred EEE
Confidence 654
No 133
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=94.49 E-value=0.45 Score=48.74 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=29.6
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITG 254 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G 254 (424)
.||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 699999999999999998865 5799999998653
No 134
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.49 E-value=0.12 Score=48.33 Aligned_cols=120 Identities=26% Similarity=0.362 Sum_probs=56.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCc---------e-eCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA---------I-KNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLND 290 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~---------i-~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ 290 (424)
++|+|.|.|-||..+|-.|++.|.+|+++ |.+-. . +.+.| ++++++...+.+.+.- .++.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~~~~~v~~l~~g~~p~~E~~--l~~ll~~~~~~~~l~~------t~~~~ 71 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DIDEEKVEALNNGELPIYEPG--LDELLKENVSAGRLRA------TTDIE 71 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S-HHHHHHHHTTSSSS-CTT--HHHHHHHHHHTTSEEE------ESEHH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eCChHHHHHHhhccccccccc--hhhhhccccccccchh------hhhhh
Confidence 58999999999999999999999999964 65421 1 11222 3344433332222211 11111
Q ss_pred ccccccceeeeccccCcccccccc----------cc------cceEEEecCCCC-CCH-HHHHHHHhCC-------ceEe
Q 014463 291 LLVHECDVLVPCALGGVLNKENAA----------DV------KAKFIIEAANHP-TDP-EADEILSKKG-------VVIL 345 (424)
Q Consensus 291 ll~~~~DIliPaA~~~~It~~na~----------~i------~akiIvEgAN~p-~t~-eA~~iL~~rG-------I~vi 345 (424)
---.++|+++-|- +.-.++++.. .+ .+-+|.|..=.| +|. -...+|++.+ +.+.
T Consensus 72 ~ai~~adv~~I~V-pTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~ 150 (185)
T PF03721_consen 72 EAIKDADVVFICV-PTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYS 150 (185)
T ss_dssp HHHHH-SEEEE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE-
T ss_pred hhhhccceEEEec-CCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEEC
Confidence 1124788888774 2222222211 11 344566665555 455 3456888655 7788
Q ss_pred ccccc
Q 014463 346 PDIYA 350 (424)
Q Consensus 346 PD~la 350 (424)
|+++.
T Consensus 151 PErl~ 155 (185)
T PF03721_consen 151 PERLR 155 (185)
T ss_dssp -----
T ss_pred CCccC
Confidence 99876
No 135
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.44 E-value=0.11 Score=50.53 Aligned_cols=36 Identities=17% Similarity=0.438 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+.++|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678999999999999999999999997555587765
No 136
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=94.37 E-value=0.21 Score=49.28 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=63.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccccee
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVL 299 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIl 299 (424)
++|+|+|+|.+|+.+|+.|.+.|.+|+ +.|.+ .+.+.+..+. + .... +.++++ .+||++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~----------~~~~~~~~~~-g-------~~~~~~~~e~~-~~~d~v 62 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN----------PEAVAEVIAA-G-------AETASTAKAVA-EQCDVI 62 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHC-C-------CeecCCHHHHH-hcCCEE
Confidence 579999999999999999999999886 55543 2233222221 1 1111 223443 479999
Q ss_pred eeccccCccccc-------ccccc-cceEEEecCCCCC--CHHHHHHHHhCCceEec
Q 014463 300 VPCALGGVLNKE-------NAADV-KAKFIIEAANHPT--DPEADEILSKKGVVILP 346 (424)
Q Consensus 300 iPaA~~~~It~~-------na~~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viP 346 (424)
|-|.-...-.+. ..+.+ .-++|+...+... +.+..+.+.++|+.++.
T Consensus 63 i~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 63 ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred EEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 988653321111 12222 2367887665542 23455678888987643
No 137
>PRK07680 late competence protein ComER; Validated
Probab=94.35 E-value=0.11 Score=50.85 Aligned_cols=111 Identities=15% Similarity=0.318 Sum_probs=65.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC---EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG---KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga---kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~ 296 (424)
++|.|+|.|++|+.+++.|.+.|. .-|.+.|.+ .+.+....++ +++.... ++.+++ .++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~----------~~~~~~~~~~------~~g~~~~~~~~~~~-~~a 63 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT----------PAKAYHIKER------YPGIHVAKTIEEVI-SQS 63 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC----------HHHHHHHHHH------cCCeEEECCHHHHH-HhC
Confidence 369999999999999999998884 224466653 2333333222 1222222 223333 579
Q ss_pred ceeeeccccCccc---ccccccc-cceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463 297 DVLVPCALGGVLN---KENAADV-KAKFIIEAANHPTDPEADEILSKKGVVILPDI 348 (424)
Q Consensus 297 DIliPaA~~~~It---~~na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~ 348 (424)
|++|-|.-...+- ++..+.+ +-++|+.-+|+-...+.++.+..+.+.++|-.
T Consensus 64 DiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~ 119 (273)
T PRK07680 64 DLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSI 119 (273)
T ss_pred CEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCCh
Confidence 9999987443321 1122223 23688888876544445556666667888853
No 138
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.34 E-value=0.63 Score=50.41 Aligned_cols=130 Identities=19% Similarity=0.254 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHH------hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHH
Q 014463 198 ATGLGVFFATEALLAE------HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYK 271 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~ 271 (424)
--+.|+..+++..+.. .+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.+.+ .++..+..
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~----------~e~a~~la 419 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT----------YERAKELA 419 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHH
Confidence 3478888888764422 2456889999999999999999999999999876 77763 33443333
Q ss_pred HhcCCcccCCCCeeecCC---cccccccceeeeccccCcc---ccccc--ccc-cceEEEecCCCCCCHHHHHHHHhCCc
Q 014463 272 KSNKSLNDFQGGNAMDLN---DLLVHECDVLVPCALGGVL---NKENA--ADV-KAKFIIEAANHPTDPEADEILSKKGV 342 (424)
Q Consensus 272 ~~~g~v~~~~~~~~i~~~---~ll~~~~DIliPaA~~~~I---t~~na--~~i-~akiIvEgAN~p~t~eA~~iL~~rGI 342 (424)
++-+ ...++-+ +.+..++||+|-|..-+.- +..-. ..+ ...+|.+-.-+|..-.--+.-+++|.
T Consensus 420 ~~l~-------~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~ 492 (529)
T PLN02520 420 DAVG-------GQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGA 492 (529)
T ss_pred HHhC-------CceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCC
Confidence 3211 0111111 2233467899866532221 11101 112 34678888888753223334455666
Q ss_pred eEe
Q 014463 343 VIL 345 (424)
Q Consensus 343 ~vi 345 (424)
.++
T Consensus 493 ~~~ 495 (529)
T PLN02520 493 IIV 495 (529)
T ss_pred eEe
Confidence 544
No 139
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.28 E-value=0.8 Score=47.67 Aligned_cols=121 Identities=15% Similarity=0.232 Sum_probs=67.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-----C---CCCee-ecCC-c
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-----F---QGGNA-MDLN-D 290 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-----~---~~~~~-i~~~-~ 290 (424)
++|+|+|.|.||..+|..|. .|..|+ +.|.+ .+++.+..+..-.+.+ + ..... .+.+ +
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d----------~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL----------PSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKN 68 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC----------HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchh
Confidence 37999999999999997776 499988 55654 2222222211000000 0 01111 1111 1
Q ss_pred ccccccceeeeccccCccccc-------cc-------ccc--cceEEEecCCCC-CCHHHHHHHHhCCceEecccccccc
Q 014463 291 LLVHECDVLVPCALGGVLNKE-------NA-------ADV--KAKFIIEAANHP-TDPEADEILSKKGVVILPDIYANSG 353 (424)
Q Consensus 291 ll~~~~DIliPaA~~~~It~~-------na-------~~i--~akiIvEgAN~p-~t~eA~~iL~~rGI~viPD~laNaG 353 (424)
-...+||++|-|--.. ++.+ .+ ..+ ..-+|.+..=.| +|.+..+.+.++|+.+.|.++...-
T Consensus 69 ~~~~~ad~vii~Vpt~-~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~ 147 (388)
T PRK15057 69 EAYRDADYVIIATPTD-YDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGK 147 (388)
T ss_pred hhhcCCCEEEEeCCCC-CccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCc
Confidence 1236899999885433 2211 11 111 334555666555 5666677788899999999886543
Q ss_pred C
Q 014463 354 G 354 (424)
Q Consensus 354 G 354 (424)
-
T Consensus 148 a 148 (388)
T PRK15057 148 A 148 (388)
T ss_pred c
Confidence 3
No 140
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.25 E-value=0.23 Score=51.07 Aligned_cols=85 Identities=15% Similarity=0.118 Sum_probs=62.5
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463 194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK 272 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~ 272 (424)
+-.+.|..|++. +|++.+.+++|++|+|+| ..-||.-++.+|.++++.|. ++.++- + |+.
T Consensus 209 ~f~PCTp~avie----lL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~T----~---nl~------- 269 (364)
T PLN02616 209 LFVPCTPKGCIE----LLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSRT----K---NPE------- 269 (364)
T ss_pred CCCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCCC----C---CHH-------
Confidence 345799999764 466679999999999999 57899999999999999987 776532 0 111
Q ss_pred hcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
-+...+||+|-|.. .+.|+.+.++.
T Consensus 270 ------------------~~~r~ADIVIsAvGkp~~i~~d~vK~ 295 (364)
T PLN02616 270 ------------------EITREADIIISAVGQPNMVRGSWIKP 295 (364)
T ss_pred ------------------HHHhhCCEEEEcCCCcCcCCHHHcCC
Confidence 11347888888874 56677666664
No 141
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.25 E-value=0.76 Score=46.32 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALL 268 (424)
Q Consensus 190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~ 268 (424)
-|..-..--||-.-..+++.+. . ...++|+|+|.|..|+..++.+.. ++.+-|.|.+.+ .+...
T Consensus 100 d~~~lT~~RTaa~sala~~~La----~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs----------~~~a~ 164 (314)
T PRK06141 100 DGTELTARRTAAASALAASYLA----R-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD----------PAKAE 164 (314)
T ss_pred cCcchhcchhHHHHHHHHHHhC----C-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHH
Confidence 3333333344444444444432 2 356899999999999999986654 554444477653 34444
Q ss_pred HHHHhcCCcccCCCCeeec-CCcccccccceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463 269 KYKKSNKSLNDFQGGNAMD-LNDLLVHECDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL 345 (424)
Q Consensus 269 ~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi 345 (424)
++.++-... ++ .....+ .++.+ .+|||++=|.-. ..++.+.++. .+-+.+=|++.|...|.+..+.+++..|+
T Consensus 165 ~~a~~~~~~-g~-~~~~~~~~~~av-~~aDIVi~aT~s~~pvl~~~~l~~-g~~i~~ig~~~~~~~El~~~~~~~a~~~v 240 (314)
T PRK06141 165 ALAAELRAQ-GF-DAEVVTDLEAAV-RQADIISCATLSTEPLVRGEWLKP-GTHLDLVGNFTPDMRECDDEAIRRASVYV 240 (314)
T ss_pred HHHHHHHhc-CC-ceEEeCCHHHHH-hcCCEEEEeeCCCCCEecHHHcCC-CCEEEeeCCCCcccccCCHHHHhcCcEEE
Confidence 443331110 11 112222 12233 489999766542 2355554443 55677888888888888877777776665
Q ss_pred cc
Q 014463 346 PD 347 (424)
Q Consensus 346 PD 347 (424)
=|
T Consensus 241 D~ 242 (314)
T PRK06141 241 DT 242 (314)
T ss_pred cC
Confidence 43
No 142
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.23 E-value=0.23 Score=49.63 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=65.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.++|..|++.. +++++.+++|++++|+| ...||.-++.+|.+++|.|. ++.+.- + |+. +
T Consensus 138 ~PcTp~aii~l----L~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~T----~---dl~---~----- 197 (282)
T PRK14180 138 ESCTPKGIMTM----LREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRFT----T---DLK---S----- 197 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCCC----C---CHH---H-----
Confidence 46899888765 45678999999999999 57899999999999999987 776631 0 111 1
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+...+||+|-|.. .+.|+.+.++. .|-+|=-|-|
T Consensus 198 -----------------~~k~ADIvIsAvGkp~~i~~~~vk~-gavVIDvGin 232 (282)
T PRK14180 198 -----------------HTTKADILIVAVGKPNFITADMVKE-GAVVIDVGIN 232 (282)
T ss_pred -----------------HhhhcCEEEEccCCcCcCCHHHcCC-CcEEEEeccc
Confidence 1357888888875 66777766665 3434333433
No 143
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.21 Score=49.88 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=66.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+.|..|++.. ++++|.+++|++|+|.|- ..||.-++.+|.++++.|. ++.++. + |+. +
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T----~---~l~---~----- 196 (284)
T PRK14170 137 VPCTPAGIIEL----IKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT----K---DLP---Q----- 196 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---H-----
Confidence 47898887665 556799999999999995 6799999999999999987 776632 0 111 1
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
....+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus 197 -----------------~~~~ADIvI~AvG~~~~i~~~~vk~-GavVIDvGin 231 (284)
T PRK14170 197 -----------------VAKEADILVVATGLAKFVKKDYIKP-GAIVIDVGMD 231 (284)
T ss_pred -----------------HHhhCCEEEEecCCcCccCHHHcCC-CCEEEEccCc
Confidence 1346788888875 66777777765 4544444444
No 144
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.18 E-value=0.11 Score=51.40 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=55.5
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~ 296 (424)
.||+|+|||++|+.+++.|... +..+++|.|++. +...+... . ...++ .++++..++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~---~------~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAG---R------VALLDGLPGLLAWRP 63 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhc---c------CcccCCHHHHhhcCC
Confidence 6899999999999999988643 378998877742 22222111 1 11232 467788899
Q ss_pred ceeeeccccCcccccccccc--cceEEEec
Q 014463 297 DVLVPCALGGVLNKENAADV--KAKFIIEA 324 (424)
Q Consensus 297 DIliPaA~~~~It~~na~~i--~akiIvEg 324 (424)
|++++||....+.+--..-+ .+.+|+-.
T Consensus 64 DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 64 DLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 99999998877654433333 34555543
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.17 E-value=0.12 Score=50.17 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999997666677764
No 146
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.10 E-value=0.2 Score=51.73 Aligned_cols=35 Identities=34% Similarity=0.406 Sum_probs=30.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.+.+|+|.|+|.+|+.+++.+...|++|+ +.|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECC
Confidence 567899999999999999999999999866 66763
No 147
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.08 E-value=0.12 Score=52.83 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+.++|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 788999999999999999999999998666688875
No 148
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.05 E-value=0.082 Score=53.22 Aligned_cols=103 Identities=20% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
..+.|++|.|.|+|++|+.+|+.|...|++|++. |.+. .+.|.. . ...+.++++ .+
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~-~r~~---~~~~~~---------------~----~~~~l~ell-~~ 173 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY-TRSY---VNDGIS---------------S----IYMEPEDIM-KK 173 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CCCC---cccCcc---------------c----ccCCHHHHH-hh
Confidence 3589999999999999999999999999999854 5431 111111 0 011234555 47
Q ss_pred cceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCc
Q 014463 296 CDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGV 342 (424)
Q Consensus 296 ~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI 342 (424)
||+++-|.- .+.|+.+....++ -.+++.-+=+++ ..+| .+.|+++-+
T Consensus 174 aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 174 SDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred CCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 899988764 3345555555543 347777777764 4444 467777645
No 149
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.98 E-value=1.1 Score=40.41 Aligned_cols=32 Identities=34% Similarity=0.622 Sum_probs=27.8
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 252 (424)
.+|+|.|||.+|+.+++.+.+ .+.+++++.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 479999999999999998864 67999999884
No 150
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=93.97 E-value=0.55 Score=51.58 Aligned_cols=137 Identities=13% Similarity=0.184 Sum_probs=80.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~ 296 (424)
.+|+|.|||.+|+.+++.|.++|..++ +.|. |.+.+.+..+. +.-.-|-+ .++.++| -.++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~A 465 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER----------DISAVNLMRKY-GYKVYYGD---ATQLELLRAAGAEKA 465 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhC-CCeEEEee---CCCHHHHHhcCCccC
Confidence 589999999999999999999999998 6676 34555444332 21111111 1223333 2478
Q ss_pred ceeeeccccCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCce-EeccccccccCcchhhHHHhhh-cccc
Q 014463 297 DVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVV-ILPDIYANSGGVTVSYFEWVQN-IQGF 369 (424)
Q Consensus 297 DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~-viPD~laNaGGVi~s~~E~~qn-~~~~ 369 (424)
|++|-|.-....|. ..+++. +.++|+-.- +++..+.|++.|+- ++|+-+-.+ .+.-+. +...
T Consensus 466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~----~~~~~~~L~~~Ga~~vv~e~~es~-------l~l~~~~L~~l 534 (601)
T PRK03659 466 EAIVITCNEPEDTMKIVELCQQHFPHLHILARAR----GRVEAHELLQAGVTQFSRETFSSA-------LELGRKTLVSL 534 (601)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeC----CHHHHHHHHhCCCCEEEccHHHHH-------HHHHHHHHHHc
Confidence 88776644332221 123332 567887543 46777899999985 557754332 222211 2234
Q ss_pred CCCHHHHHHHHHHH
Q 014463 370 MWEEEKVNHELKRY 383 (424)
Q Consensus 370 ~w~~e~v~~~l~~~ 383 (424)
..+.+++.+.+++.
T Consensus 535 g~~~~~~~~~~~~~ 548 (601)
T PRK03659 535 GMHPHQAQRAQQHF 548 (601)
T ss_pred CCCHHHHHHHHHHH
Confidence 45667777666653
No 151
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.95 E-value=0.8 Score=48.72 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=27.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVV 247 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVV 247 (424)
|+|++|+|+|+|+.|+.-|.-|...|.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 899999999999999988888888898887
No 152
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.94 E-value=1.7 Score=43.02 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=94.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC----EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE 295 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~ 295 (424)
++|.++|.|++|+.+++-|.+.|. .|+ ++|.+ .+.+....++.+ .+.. ++.++. .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence 479999999999999999988874 344 55542 344444433222 1222 233343 48
Q ss_pred cceeeeccccCcccc---cccccccc-eEEEecCCCCCCHHHHHHHHh--CCceEeccccccccC-cchhhH--------
Q 014463 296 CDVLVPCALGGVLNK---ENAADVKA-KFIIEAANHPTDPEADEILSK--KGVVILPDIYANSGG-VTVSYF-------- 360 (424)
Q Consensus 296 ~DIliPaA~~~~It~---~na~~i~a-kiIvEgAN~p~t~eA~~iL~~--rGI~viPD~laNaGG-Vi~s~~-------- 360 (424)
|||+|-|--...+.+ +..+.++. ++|+.-+-+-....-.+.|.. +=+.++|-.-+-.|- ++.-|+
T Consensus 64 aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~ 143 (272)
T PRK12491 64 ADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKD 143 (272)
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHH
Confidence 999998876543321 12222333 488888877665666666643 345788876554432 222111
Q ss_pred ----HHhhhc-cccCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 014463 361 ----EWVQNI-QGFMWEEEKVNHELKR-------YMMSAFKDIKTMCQTHNCNLRMGAFTLGVN 412 (424)
Q Consensus 361 ----E~~qn~-~~~~w~~e~v~~~l~~-------~m~~~~~~v~~~a~~~~~~~r~aA~~~A~~ 412 (424)
+++.+. ....|-+|+-.+.+-. ++...++.+.+.+.+.|++..+|-.+++..
T Consensus 144 ~~~v~~lf~~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 144 IKEVLNIFNIFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred HHHHHHHHHcCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222222 1123332332222111 234445566677778888877766655443
No 153
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=93.93 E-value=1.3 Score=44.01 Aligned_cols=115 Identities=21% Similarity=0.237 Sum_probs=71.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
+++.++|+||+|+.++.-|.+.| ..|+ |++.+ .+.+..+.++ |+.. ..++.+-+..++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~------~g~~-~~~~~~~~~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAE------YGVV-TTTDNQEAVEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHH------cCCc-ccCcHHHHHhhC
Confidence 57999999999999999999998 3555 88874 3333334433 3221 123334556679
Q ss_pred ceeeeccccCcccccccccc----cceEEEecCCCCCCHHHHHHHH-hCCceEeccccccccC
Q 014463 297 DVLVPCALGGVLNKENAADV----KAKFIIEAANHPTDPEADEILS-KKGVVILPDIYANSGG 354 (424)
Q Consensus 297 DIliPaA~~~~It~~na~~i----~akiIvEgAN~p~t~eA~~iL~-~rGI~viPD~laNaGG 354 (424)
|+++.|--+..+ ++...++ +-|+|+--|=+-....-.+.|- .+=+.++|-.-+-.|-
T Consensus 64 dvv~LavKPq~~-~~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~ 125 (266)
T COG0345 64 DVVFLAVKPQDL-EEVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGA 125 (266)
T ss_pred CEEEEEeChHhH-HHHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcC
Confidence 999988654332 2223333 4567776665544455555664 3335788987665553
No 154
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.93 E-value=0.18 Score=47.76 Aligned_cols=139 Identities=20% Similarity=0.199 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHHHH-----HHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHH
Q 014463 196 EAATGLGVFFATEALL-----AEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLK 269 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~-----~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~ 269 (424)
.+.|.+||+..++..= ...|.+++|++++|+| ...||.-++.+|.++||.|. ++|++|..+-..+-.
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~~~~~~~------ 105 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQVFTRGES------ 105 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccccccccc------
Confidence 3689999987765420 0114589999999999 47799999999999999998 999887655222111
Q ss_pred HHHhcCCcccCCCCeeecC--Cccc--ccccceeeeccc-cCc-ccccccccccceEEEecCCCCCCHHHHHHHHhCCce
Q 014463 270 YKKSNKSLNDFQGGNAMDL--NDLL--VHECDVLVPCAL-GGV-LNKENAADVKAKFIIEAANHPTDPEADEILSKKGVV 343 (424)
Q Consensus 270 ~~~~~g~v~~~~~~~~i~~--~~ll--~~~~DIliPaA~-~~~-It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~ 343 (424)
... . .....+ ..+. ...+||+|-|.. .+. |+.+.++. .|-+|==|-|.-.. +.+ .++-=.
T Consensus 106 -------~~h-s-~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~-GavVIDVGi~~dvd---~~v-~~~as~ 171 (197)
T cd01079 106 -------IRH-E-KHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKD-GAICINFASIKNFE---PSV-KEKASI 171 (197)
T ss_pred -------ccc-c-cccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCC-CcEEEEcCCCcCcc---HhH-HhhcCE
Confidence 100 0 000001 0122 357899998875 555 78777665 34444344443222 122 222224
Q ss_pred EeccccccccCcchhh
Q 014463 344 ILPDIYANSGGVTVSY 359 (424)
Q Consensus 344 viPD~laNaGGVi~s~ 359 (424)
+.|= -|-++++.
T Consensus 172 iTPv----VGpvTva~ 183 (197)
T cd01079 172 YVPS----IGKVTIAM 183 (197)
T ss_pred eCCC----cCHHHHHH
Confidence 5662 66666554
No 155
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.86 E-value=0.26 Score=49.32 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=61.6
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+.|..|++.. +++.+.+++|++++|+| ..-||.-++.+|.++++.|. ++.++. -|+. +
T Consensus 139 ~PcTp~av~~l----L~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T-------~~L~---~----- 198 (288)
T PRK14171 139 IPCTALGCLAV----IKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT-------HNLS---S----- 198 (288)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC-------CCHH---H-----
Confidence 46899886654 56679999999999999 47799999999999999987 887642 0111 1
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+...+||+|-|.. .+.|+.+.++.
T Consensus 199 -----------------~~~~ADIvV~AvGkp~~i~~~~vk~ 223 (288)
T PRK14171 199 -----------------ITSKADIVVAAIGSPLKLTAEYFNP 223 (288)
T ss_pred -----------------HHhhCCEEEEccCCCCccCHHHcCC
Confidence 1346788888764 56677776665
No 156
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.84 E-value=0.1 Score=52.70 Aligned_cols=107 Identities=18% Similarity=0.252 Sum_probs=65.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
..++|+||.|.|+|++|+.+|+.|...|++|+++ |.+.. ...|+ ..+.. ..+-++++ .+
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~-~~~~~--~~~~~---------------~~~~~--~~~l~e~l-~~ 190 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCW-SRSRK--SWPGV---------------QSFAG--REELSAFL-SQ 190 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-eCCCC--CCCCc---------------eeecc--cccHHHHH-hc
Confidence 3588999999999999999999999999999865 33210 00011 11100 01112233 46
Q ss_pred cceeeecccc-----Cccccccccccc-ceEEEecCCCCC-CHHHH-HHHHhCCce
Q 014463 296 CDVLVPCALG-----GVLNKENAADVK-AKFIIEAANHPT-DPEAD-EILSKKGVV 343 (424)
Q Consensus 296 ~DIliPaA~~-----~~It~~na~~i~-akiIvEgAN~p~-t~eA~-~iL~~rGI~ 343 (424)
||+++-|.-. +.|+.+....++ -.+++.-+-+++ ..+|- +.|.+.-|.
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 8888877643 234444444443 358888888885 44443 567776664
No 157
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.81 E-value=0.085 Score=44.30 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|++|.|+|.|+||..-++.|.+.|++|.-|+..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3589999999999999999999999999999866654
No 158
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.80 E-value=0.24 Score=49.57 Aligned_cols=108 Identities=26% Similarity=0.297 Sum_probs=66.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli 300 (424)
.+|+++|+|++|+..|+.|.+.|..+. +.|.+ .++..+..... ++...+...=...++||+|
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~----------~~ka~~~~~~~-------Ga~~a~s~~eaa~~aDvVi 62 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT----------PEKAAELLAAA-------GATVAASPAEAAAEADVVI 62 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC----------hhhhhHHHHHc-------CCcccCCHHHHHHhCCEEE
Confidence 479999999999999999999999987 77764 34423322221 2222222122346889988
Q ss_pred ecccc-----Ccccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEec
Q 014463 301 PCALG-----GVLNKEN--AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILP 346 (424)
Q Consensus 301 PaA~~-----~~It~~n--a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viP 346 (424)
-|-.. .++..++ +... +-+++++-... | .+.+..+.++++|+.++=
T Consensus 63 tmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 63 TMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred EecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe
Confidence 87532 2232211 1111 34566666554 4 356677889999998873
No 159
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=93.78 E-value=0.66 Score=48.47 Aligned_cols=32 Identities=38% Similarity=0.614 Sum_probs=28.0
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 252 (424)
.+|+|.|||.+|+.+.+.|.+. ...|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 5899999999999999999876 4689998774
No 160
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.29 Score=48.86 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+.|..|++.. +++++.+++|++++|.| ...||.-++.+|.++++.|. ++.++. + |++
T Consensus 137 ~PcTp~avi~l----l~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~T----~---nl~--------- 195 (282)
T PRK14182 137 RPCTPAGVMRM----LDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSRT----A---DLA--------- 195 (282)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC----C---CHH---------
Confidence 46898887665 56678999999999999 57799999999999999877 776531 0 111
Q ss_pred CCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 275 KSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 275 g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+ +...+||+|-|+. .+.|+.+.++.
T Consensus 196 ---------------~-~~~~ADIvI~AvGk~~~i~~~~ik~ 221 (282)
T PRK14182 196 ---------------G-EVGRADILVAAIGKAELVKGAWVKE 221 (282)
T ss_pred ---------------H-HHhhCCEEEEecCCcCccCHHHcCC
Confidence 0 2346889988874 56677776665
No 161
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.73 E-value=1.9 Score=42.36 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=56.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 293 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~ 293 (424)
+.++|.|+|.|++|+.+++.|.+.| .+|+ ++|.+- .+.+..+.++.+ .+.. ++.++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r~~---------~~~~~~l~~~~g-------~~~~~~~~e~~- 63 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNRSN---------ETRLQELHQKYG-------VKGTHNKKELL- 63 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECCCC---------HHHHHHHHHhcC-------ceEeCCHHHHH-
Confidence 4579999999999999999999887 4544 555421 122333333211 1211 222332
Q ss_pred cccceeeeccccCccccc---cccccc-ceEEEecCCCCCCHH-HHHHH
Q 014463 294 HECDVLVPCALGGVLNKE---NAADVK-AKFIIEAANHPTDPE-ADEIL 337 (424)
Q Consensus 294 ~~~DIliPaA~~~~It~~---na~~i~-akiIvEgAN~p~t~e-A~~iL 337 (424)
.+|||+|-|--...+.+. ..+.++ -++|+.-+++- +++ ..+.+
T Consensus 64 ~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi-~~~~l~~~~ 111 (279)
T PRK07679 64 TDANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGV-STHSIRNLL 111 (279)
T ss_pred hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCC-CHHHHHHHc
Confidence 478999988655443221 112232 35888876654 444 44443
No 162
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.71 E-value=0.34 Score=48.72 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY 270 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~ 270 (424)
.+.|..|++.. +++++.+++|++|+|+| ...||+-++.+|.++ ++.|. ++.++-. |+
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T~-------~l------ 198 (297)
T PRK14167 137 KPCTPHGIQKL----LAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRTD-------DL------ 198 (297)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCCC-------CH------
Confidence 36898887665 56678999999999999 577999999999887 78776 7766320 11
Q ss_pred HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+-....+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus 199 -------------------~~~~~~ADIvIsAvGkp~~i~~~~ik~-gaiVIDvGin 235 (297)
T PRK14167 199 -------------------AAKTRRADIVVAAAGVPELIDGSMLSE-GATVIDVGIN 235 (297)
T ss_pred -------------------HHHHhhCCEEEEccCCcCccCHHHcCC-CCEEEEcccc
Confidence 112457899998874 66777776665 3433333434
No 163
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.65 E-value=0.11 Score=52.86 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=66.6
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
..+.|++|.|+|+|++|+.+|+.|...|.+|++. |.+. +..... ..+ .-+.++++ .+
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~-d~~~----------~~~~~~-------~~~----~~~l~ell-~~ 198 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAY-DAYP----------NKDLDF-------LTY----KDSVKEAI-KD 198 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eCCh----------hHhhhh-------hhc----cCCHHHHH-hc
Confidence 3589999999999999999999999999999854 5431 110000 001 01123333 47
Q ss_pred cceeeeccccC-----ccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463 296 CDVLVPCALGG-----VLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 343 (424)
Q Consensus 296 ~DIliPaA~~~-----~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~ 343 (424)
||+++-|.-.. .|+++....++ -.+++..+=+++ ..+| .+.|.+.-|.
T Consensus 199 aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 199 ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 89988776432 34444444443 358888888885 4444 3677766664
No 164
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.65 E-value=0.2 Score=48.00 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|+|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678899999999999999999999998666688764
No 165
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.63 E-value=0.67 Score=47.47 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=27.6
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~ 252 (424)
.||+|-|||-+|+.+.|.+.+ ....||+|-|.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~ 35 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDP 35 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCC
Confidence 489999999999999998764 46899999774
No 166
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.61 E-value=1.6 Score=43.09 Aligned_cols=165 Identities=15% Similarity=0.111 Sum_probs=88.8
Q ss_pred EEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceeeecc
Q 014463 225 IQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLVPCA 303 (424)
Q Consensus 225 IqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIliPaA 303 (424)
|+|.|++|..+++.|.+.|.+|+ +.|.+ .+.+.+..+. + .... ++.++. .+||++|-|-
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~-g-------~~~~~s~~~~~-~~advVil~v 60 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVR-VFDLF----------PDAVEEAVAA-G-------AQAAASPAEAA-EGADRVITML 60 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEE-EEeCC----------HHHHHHHHHc-C-------CeecCCHHHHH-hcCCEEEEeC
Confidence 46999999999999999999876 55653 2333333322 1 1111 222332 4789999886
Q ss_pred ccCcccc-------ccccccc-ceEEEecCCCC--CCHHHHHHHHhCCceEeccccc-------------cccCcchhhH
Q 014463 304 LGGVLNK-------ENAADVK-AKFIIEAANHP--TDPEADEILSKKGVVILPDIYA-------------NSGGVTVSYF 360 (424)
Q Consensus 304 ~~~~It~-------~na~~i~-akiIvEgAN~p--~t~eA~~iL~~rGI~viPD~la-------------NaGGVi~s~~ 360 (424)
-.....+ .-.+.++ -++|+...... ++.+..+.+.++|+.++---+. -.||--. .+
T Consensus 61 p~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~-~~ 139 (288)
T TIGR01692 61 PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAE-EF 139 (288)
T ss_pred CChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHH-HH
Confidence 5422211 1122332 35777766543 2345557788999987753221 1233221 22
Q ss_pred HHhhh----cc----ccCC-CHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463 361 EWVQN----IQ----GFMW-EEEKVNH----ELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 410 (424)
Q Consensus 361 E~~qn----~~----~~~w-~~e~v~~----~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 410 (424)
+.++. +. +... ...+..+ -+.......+.|.+..+++.|+++.+....+.
T Consensus 140 ~~~~~~l~~~g~~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~ 202 (288)
T TIGR01692 140 AAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIAN 202 (288)
T ss_pred HHHHHHHHHhcCCeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 22221 11 1111 1222222 23333334577888899999999887665443
No 167
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.59 E-value=0.11 Score=54.48 Aligned_cols=104 Identities=20% Similarity=0.295 Sum_probs=65.7
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccccc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVH 294 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~ 294 (424)
..|.|+||.|.|+|++|+.+|+.+...|.+|++ .|.+.. ...+ +.+.. +-++++ .
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~-~d~~~~----------------~~~~------~~~~~~~l~ell-~ 202 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYF-YDIEDK----------------LPLG------NARQVGSLEELL-A 202 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECCCcc----------------cccC------CceecCCHHHHH-h
Confidence 469999999999999999999999999999985 343210 0000 01111 224455 3
Q ss_pred ccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce
Q 014463 295 ECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV 343 (424)
Q Consensus 295 ~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~ 343 (424)
.||+++-+.- .+.|+++....++ --+++--|=+++ +.+| .+.|++.-|.
T Consensus 203 ~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 203 QSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred hCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 5788876652 2245555555553 357777777774 4444 3567766664
No 168
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.57 E-value=0.042 Score=53.20 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=30.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|+|.|.|.||+++++.|...|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999997444466654
No 169
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.56 E-value=0.45 Score=47.91 Aligned_cols=111 Identities=18% Similarity=0.115 Sum_probs=62.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC------Ceeec-CCccc
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG------GNAMD-LNDLL 292 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~------~~~i~-~~~ll 292 (424)
.++|+|+|.|++|..++..|.+.|..|. +.+.+ .+.+....+.......+++ ....+ ..+.+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r~----------~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~ 72 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWARR----------PEFAAALAAERENREYLPGVALPAELYPTADPEEAL 72 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeCC----------HHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH
Confidence 4689999999999999999999999876 55543 2222222221111111111 11121 12222
Q ss_pred ccccceeeeccccCccccccccccc-ceEEEecCCCCC-----CHHHHHHHHh---CCce
Q 014463 293 VHECDVLVPCALGGVLNKENAADVK-AKFIIEAANHPT-----DPEADEILSK---KGVV 343 (424)
Q Consensus 293 ~~~~DIliPaA~~~~It~~na~~i~-akiIvEgAN~p~-----t~eA~~iL~~---rGI~ 343 (424)
.+||+++-|--...+ ++..+.++ -.+|+.-+|+-. .....+.+.+ +++.
T Consensus 73 -~~aD~Vi~~v~~~~~-~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~ 130 (328)
T PRK14618 73 -AGADFAVVAVPSKAL-RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVA 130 (328)
T ss_pred -cCCCEEEEECchHHH-HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeE
Confidence 479999988665543 44434442 246777788521 2344456655 6654
No 170
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.45 E-value=0.49 Score=51.04 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..+.+|+|.|+|.+|..+++.+...|++|+ +.|.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~ 196 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR 196 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 456899999999999999999999999976 66764
No 171
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=93.43 E-value=0.95 Score=46.47 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 252 (424)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~ 35 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS 35 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC
Confidence 4899999999999999987654 5899999774
No 172
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=93.42 E-value=0.12 Score=47.58 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA 255 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~ 255 (424)
|++++|+|+|||+-|..-|..|.+.|.+|+ |....+.
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 578999999999999999999999999998 7776654
No 173
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=93.41 E-value=0.86 Score=46.69 Aligned_cols=32 Identities=28% Similarity=0.524 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 252 (424)
.||+|-|||-+|+.++|.+.+. ..+||+|-|.
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~ 36 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT 36 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4899999999999999987654 5899999774
No 174
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.32 E-value=0.28 Score=48.95 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.|..|++.. +++++.+++|++++|.|-+ .||.-++.+|.++++.|. ++.+.
T Consensus 137 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 137 VPCTPLGVMEL----LEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCcHHHHHHH----HHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 47898887554 6677999999999999976 899999999999999887 77663
No 175
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.32 E-value=0.44 Score=48.81 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=67.3
Q ss_pred CCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHH
Q 014463 194 GREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKK 272 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~ 272 (424)
+-.+.|..|++.. +++.+.+++|++++|+| ..-||.-++.+|.++++.|. ++.+.- + |+
T Consensus 192 ~~~PCTp~avi~L----L~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~T----~---nl-------- 251 (345)
T PLN02897 192 LFVSCTPKGCVEL----LIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAFT----K---DP-------- 251 (345)
T ss_pred CCcCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCCC----C---CH--------
Confidence 3457999988766 45679999999999999 57799999999999999986 776531 0 11
Q ss_pred hcCCcccCCCCeeecCCcccccccceeeeccc-cCcccccccccccceEEEecCC
Q 014463 273 SNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAADVKAKFIIEAAN 326 (424)
Q Consensus 273 ~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~i~akiIvEgAN 326 (424)
+-+...+||+|-|+. .+.|+.+.++. .|-+|=-|-|
T Consensus 252 -----------------~~~~~~ADIvIsAvGkp~~v~~d~vk~-GavVIDVGin 288 (345)
T PLN02897 252 -----------------EQITRKADIVIAAAGIPNLVRGSWLKP-GAVVIDVGTT 288 (345)
T ss_pred -----------------HHHHhhCCEEEEccCCcCccCHHHcCC-CCEEEEcccc
Confidence 012457899998875 66777776665 4434433444
No 176
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.32 E-value=0.33 Score=47.86 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=58.4
Q ss_pred CeEEEEe-cChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Ccccccccc
Q 014463 221 MKFAIQG-FGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLVHECD 297 (424)
Q Consensus 221 ~~vaIqG-fGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~~~~D 297 (424)
.+|+|.| +|.+|+.+++.+.+ .+.++++++|....-. .|-|..++... ..+ +....++ +++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~-------~~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGI-------GKV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCc-------CcC-CceeeCCHHHh-cCCCC
Confidence 4899999 79999999998875 6899999999532111 13344333211 011 1111222 334 45799
Q ss_pred eeeeccccCccccccccc---ccceEEEecCCCCCCHH
Q 014463 298 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPE 332 (424)
Q Consensus 298 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~e 332 (424)
++|-|... ..+.+++.. -+..+|+|=- ..|++
T Consensus 71 vVIdfT~p-~~~~~~~~~al~~g~~vVigtt--g~~~e 105 (266)
T TIGR00036 71 VLIDFTTP-EGVLNHLKFALEHGVRLVVGTT--GFSEE 105 (266)
T ss_pred EEEECCCh-HHHHHHHHHHHHCCCCEEEECC--CCCHH
Confidence 99999743 333444443 3567888765 35654
No 177
>PRK06153 hypothetical protein; Provisional
Probab=93.31 E-value=0.061 Score=55.86 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|++.+|+|.|.|-+|++++..|.+.|.+=+.+.|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 678999999999999999999999997545477754
No 178
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=93.19 E-value=0.41 Score=47.72 Aligned_cols=165 Identities=18% Similarity=0.193 Sum_probs=89.9
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccceee
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDVLV 300 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DIli 300 (424)
+|.++|.|++|+.+++.|.+.|..|+ |.|.+ + +.+++ .+ .+ .... ++.++. .+||++|
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~~-----~---~~~~~---~~-~g-------~~~~~s~~~~~-~~advVi 60 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLH-VTTIG-----P---VADEL---LS-LG-------AVSVETARQVT-EASDIIF 60 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEE-EEeCC-----H---hHHHH---HH-cC-------CeecCCHHHHH-hcCCEEE
Confidence 69999999999999999999999876 66652 1 11222 21 11 2211 223333 4889999
Q ss_pred eccccC-----cccccc--cccc-cceEEEecCCC-C-CCHHHHHHHHhCCceEeccccccccCcch-------------
Q 014463 301 PCALGG-----VLNKEN--AADV-KAKFIIEAANH-P-TDPEADEILSKKGVVILPDIYANSGGVTV------------- 357 (424)
Q Consensus 301 PaA~~~-----~It~~n--a~~i-~akiIvEgAN~-p-~t~eA~~iL~~rGI~viPD~laNaGGVi~------------- 357 (424)
-|--.. ++..++ +..+ .-++|++-... | .+.+..+.+.++|+.++--- =+||...
T Consensus 61 ~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP--VsGg~~~a~~g~l~~~~gG~ 138 (292)
T PRK15059 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAP--VSGGEIGAREGTLSIMVGGD 138 (292)
T ss_pred EeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHhcCcEEEEEcCC
Confidence 875432 222111 1222 34677777654 3 34556678999999876422 2333321
Q ss_pred -hhHHHhhhc----cc-c-CCC---H----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 014463 358 -SYFEWVQNI----QG-F-MWE---E----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTL 409 (424)
Q Consensus 358 -s~~E~~qn~----~~-~-~w~---~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 409 (424)
..++.++.+ .. . +.. . .-+++-+-......+.|.+..+++.|+++.+...++
T Consensus 139 ~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l 204 (292)
T PRK15059 139 EAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL 204 (292)
T ss_pred HHHHHHHHHHHHHHcCCcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 112222110 00 0 000 0 112223333334567778888999999988776554
No 179
>PRK14852 hypothetical protein; Provisional
Probab=93.16 E-value=0.27 Score=56.57 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=70.8
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHH-HhcCCcccCCCCeeecCCcccccc
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYK-KSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~-~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
.|+..+|+|.|.|-||+.+++.|...|..=+.+.|-+- ++...|.+.. .....+ +-++++ +-.+.+.+.+
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~-------Ve~SNLNRQ~l~~~~dI-G~~Kae-vaa~~l~~IN 399 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA-------YSPVNLNRQYGASIASF-GRGKLD-VMTERALSVN 399 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE-------ecccccccccCCChhhC-CChHHH-HHHHHHHHHC
Confidence 48999999999999999999999999976666888642 1111111100 000001 000111 1112233444
Q ss_pred cceeeeccccCcccccccccc--cceEEEecCCCCCCHHHH---HHHHhCCceEecc
Q 014463 296 CDVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDPEAD---EILSKKGVVILPD 347 (424)
Q Consensus 296 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~eA~---~iL~~rGI~viPD 347 (424)
.++=|-+- ...|+++|++.+ ++-+|+++..++.+.... ....++||.++--
T Consensus 400 P~v~I~~~-~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~a 455 (989)
T PRK14852 400 PFLDIRSF-PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITA 455 (989)
T ss_pred CCCeEEEE-ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 44444442 224688888875 788999999886543222 2347888877643
No 180
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.15 E-value=0.19 Score=51.45 Aligned_cols=36 Identities=22% Similarity=0.316 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|.|.|.|.+|+.+|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 778999999999999999999999998555588865
No 181
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=93.10 E-value=0.3 Score=46.72 Aligned_cols=90 Identities=26% Similarity=0.223 Sum_probs=54.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli 300 (424)
++++|.|.||+|+.+++.|...|..|+ |..+++ .+++....+..+.. .+..++++- ...|||.+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~---------~~~~~a~a~~l~~~-----i~~~~~~dA-~~~aDVVv 65 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG---------PKALAAAAAALGPL-----ITGGSNEDA-AALADVVV 65 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC---------hhHHHHHHHhhccc-----cccCChHHH-HhcCCEEE
Confidence 578999999999999999999999998 776653 23443333322111 111122111 23588888
Q ss_pred eccccCccccccc----ccccceEEEecCCC
Q 014463 301 PCALGGVLNKENA----ADVKAKFIIEAANH 327 (424)
Q Consensus 301 PaA~~~~It~~na----~~i~akiIvEgAN~ 327 (424)
.+-- -.=..+.+ +.++=|+|+...|.
T Consensus 66 LAVP-~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 66 LAVP-FEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred Eecc-HHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 7742 22122222 23446999999884
No 182
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.08 E-value=0.29 Score=48.83 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=45.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.|..|++.. +++.+.+++|++|+|.|.+ .||+.++.+|..+|+.|. +++++
T Consensus 132 ~PcTp~av~~l----l~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~ 185 (279)
T PRK14178 132 APCTPNGIMTL----LHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK 185 (279)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence 46899888765 5567899999999999987 999999999999999987 66653
No 183
>PRK14851 hypothetical protein; Provisional
Probab=93.04 E-value=0.31 Score=54.37 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=68.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 297 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 297 (424)
|++.+|+|.|.|.||+++++.|...|..=+.+.|.+- +++.-|+-+-+.. ...+ +-++++ +-.+.+.+.+.+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~--ve~sNLNRQ~~~~----~~dv-G~~Kv~-v~~~~l~~inP~ 112 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ--FEPVNVNRQFGAR----VPSF-GRPKLA-VMKEQALSINPF 112 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE--ecccccccCcCcC----hhhC-CCHHHH-HHHHHHHHhCCC
Confidence 6789999999999999999999999975555778642 1111121110000 0001 111111 111223334444
Q ss_pred eeeeccccCcccccccccc--cceEEEecCCCCCCH---HHHHHHHhCCceEec
Q 014463 298 VLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP---EADEILSKKGVVILP 346 (424)
Q Consensus 298 IliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~---eA~~iL~~rGI~viP 346 (424)
+=|-+ ....|+++|+..+ ++.+|+++..++... ...+...++||.++=
T Consensus 113 ~~I~~-~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~ 165 (679)
T PRK14851 113 LEITP-FPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVIT 165 (679)
T ss_pred CeEEE-EecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence 44433 3345677887764 788999998876322 122345678887764
No 184
>PLN02306 hydroxypyruvate reductase
Probab=92.99 E-value=0.14 Score=53.24 Aligned_cols=125 Identities=20% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-C---cccCC-CCeee-c
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-S---LNDFQ-GGNAM-D 287 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~---v~~~~-~~~~i-~ 287 (424)
|.++.|+||.|.|+|++|+.+|++|. ..|++|++ .|.... .++.......+ . ....+ ..+.. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~-~d~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 229 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQS---------TRLEKFVTAYGQFLKANGEQPVTWKRASS 229 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCCc---------hhhhhhhhhhcccccccccccccccccCC
Confidence 34589999999999999999999985 78999984 454310 00100000000 0 00000 00111 2
Q ss_pred CCcccccccceeeeccc-----cCccccccccccc-ceEEEecCCCCC-CHHH-HHHHHhCCce-Eeccccc
Q 014463 288 LNDLLVHECDVLVPCAL-----GGVLNKENAADVK-AKFIIEAANHPT-DPEA-DEILSKKGVV-ILPDIYA 350 (424)
Q Consensus 288 ~~~ll~~~~DIliPaA~-----~~~It~~na~~i~-akiIvEgAN~p~-t~eA-~~iL~~rGI~-viPD~la 350 (424)
-++++ ..|||++-+.- .+.|+++....++ -.+++.-|=+++ ..+| -+.|++.-|. ..=|.+.
T Consensus 230 L~ell-~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 230 MEEVL-READVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred HHHHH-hhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 24444 36899988653 3345655555554 458888888885 4444 3677776564 3334443
No 185
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.98 E-value=0.54 Score=47.19 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY 270 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~ 270 (424)
.++|..||+.. +++.+.+++|++|+|+| ..-||.-++.+|.++ ++.|. ++.++.. |+. +
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T~-------nl~---~- 200 (293)
T PRK14185 137 VSATPNGILEL----LKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSRSK-------NLK---K- 200 (293)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCCCC-------CHH---H-
Confidence 47899888665 55678999999999999 577999999999988 57876 7766420 111 1
Q ss_pred HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+...+||+|-|.. .+.|+.+.++.
T Consensus 201 ---------------------~~~~ADIvIsAvGkp~~i~~~~vk~ 225 (293)
T PRK14185 201 ---------------------ECLEADIIIAALGQPEFVKADMVKE 225 (293)
T ss_pred ---------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 1246888887774 66677666654
No 186
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=92.94 E-value=0.23 Score=50.09 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=54.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 297 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 297 (424)
+.|+-++|-|||+||...|..|.-.|++|+ |++.+- +.+|.+..+ +| +..+-+|.. .++|
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiDP---------I~ALQAaMe------G~---~V~tm~ea~-~e~d 271 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEIDP---------ICALQAAME------GY---EVTTLEEAI-REVD 271 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccCc---------hHHHHHHhh------cc---EeeeHHHhh-hcCC
Confidence 788889999999999999999999999998 888752 455554332 22 333333332 4678
Q ss_pred eeeeccc-cCcccccccccc
Q 014463 298 VLVPCAL-GGVLNKENAADV 316 (424)
Q Consensus 298 IliPaA~-~~~It~~na~~i 316 (424)
||+-+.. .+.|+.+--++.
T Consensus 272 ifVTtTGc~dii~~~H~~~m 291 (434)
T KOG1370|consen 272 IFVTTTGCKDIITGEHFDQM 291 (434)
T ss_pred EEEEccCCcchhhHHHHHhC
Confidence 8887764 566666644443
No 187
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.81 E-value=0.22 Score=48.16 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=51.2
Q ss_pred CeEEEEecChHHHHHHHHHHH--CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE--HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 298 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~--~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI 298 (424)
++|.|+|+|..|..+.+++.+ ..++.++|.|++ .++..+..+..+ .....+-++++ .+.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~----------~ek~~~~~~~~~------~~~~s~ide~~-~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD----------EEKAKELEASVG------RRCVSDIDELI-AEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC----------HHHHHHHHhhcC------CCccccHHHHh-hccce
Confidence 478999999999999999864 358999999985 344444333211 11122335666 89999
Q ss_pred eeeccccCccccc
Q 014463 299 LVPCALGGVLNKE 311 (424)
Q Consensus 299 liPaA~~~~It~~ 311 (424)
++.||....+-+-
T Consensus 64 vVEaAS~~Av~e~ 76 (255)
T COG1712 64 VVEAASPEAVREY 76 (255)
T ss_pred eeeeCCHHHHHHH
Confidence 9999988766443
No 188
>PRK07340 ornithine cyclodeaminase; Validated
Probab=92.77 E-value=0.77 Score=46.10 Aligned_cols=109 Identities=14% Similarity=0.086 Sum_probs=68.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
...++++|.|.|..|+..++.+.. .+.+-|.|.|.+ .+...++.++-+.. ++ ....-+.++.+ .++
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~a 189 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT----------AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAV 189 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcC
Confidence 466899999999999999998864 676666677764 34444444432211 11 11111223344 499
Q ss_pred ceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCC
Q 014463 297 DVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKG 341 (424)
Q Consensus 297 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rG 341 (424)
||+|=|.-. ..++.. -+-.+-+++=|++.|-..|.+..+-.+-
T Consensus 190 DiVitaT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~~~~~~~a 234 (304)
T PRK07340 190 DLVVTATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELAPRTVRGS 234 (304)
T ss_pred CEEEEccCCCCceeCcc--CCCCCEEEecCCCCCCcccCCHHHHhhC
Confidence 999988753 345542 2346779999999997777665344343
No 189
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=92.62 E-value=0.18 Score=51.30 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=30.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 249 (424)
|+|+||+|+|+|++|+..|+.|...|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999843
No 190
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.54 E-value=0.49 Score=48.36 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=29.0
Q ss_pred CeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~ 253 (424)
.||+|.|||.+|+.+++.+.+ .+.++++|+|++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 489999999999999998864 579999999964
No 191
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.47 E-value=0.098 Score=48.49 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=26.2
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+|+|.|.|.+|+.+|..+...|.+|+ +.|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEECC
Confidence 68999999999999999999999998 66663
No 192
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.46 E-value=0.29 Score=47.03 Aligned_cols=114 Identities=27% Similarity=0.379 Sum_probs=62.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc---ccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL---VHECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll---~~~~D 297 (424)
++|+|.|.|.||+.+|+.|.+.|..|+.| |.+ .+.+.++....-....+- +...+.+.|. -.++|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I-d~d----------~~~~~~~~~~~~~~~~v~-gd~t~~~~L~~agi~~aD 68 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI-DRD----------EERVEEFLADELDTHVVI-GDATDEDVLEEAGIDDAD 68 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE-EcC----------HHHHHHHhhhhcceEEEE-ecCCCHHHHHhcCCCcCC
Confidence 58999999999999999999999999955 542 334443222111110000 0001111222 34789
Q ss_pred eeeeccccCccccc---cc-ccccceEEEecCCCCCCHHHHHHHHhCC--ceEecccc
Q 014463 298 VLVPCALGGVLNKE---NA-ADVKAKFIIEAANHPTDPEADEILSKKG--VVILPDIY 349 (424)
Q Consensus 298 IliPaA~~~~It~~---na-~~i~akiIvEgAN~p~t~eA~~iL~~rG--I~viPD~l 349 (424)
+++=+...+.+|-- .+ +.+..+-|+-=+ .+++-.++|.+-| ..+.|...
T Consensus 69 ~vva~t~~d~~N~i~~~la~~~~gv~~viar~---~~~~~~~~~~~~g~~~ii~Pe~~ 123 (225)
T COG0569 69 AVVAATGNDEVNSVLALLALKEFGVPRVIARA---RNPEHEKVLEKLGADVIISPEKL 123 (225)
T ss_pred EEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe---cCHHHHHHHHHcCCcEEECHHHH
Confidence 99988665544321 12 223332222111 3466678888888 34555544
No 193
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.43 E-value=0.18 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 249 (424)
.+++|++|.|.|.|.||...++.|.+.|++|+-|
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 5689999999999999999999999999999844
No 194
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=92.38 E-value=1.5 Score=45.07 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=27.8
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 252 (424)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCC
Confidence 5899999999999999987654 6899999873
No 195
>PRK07877 hypothetical protein; Provisional
Probab=92.37 E-value=0.29 Score=54.85 Aligned_cols=125 Identities=12% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
|+..+|+|.|.| +|+++|.+|...|. +++ +.|.+- +++.-|.+.......+ +-++++ .-.+.+.+.+
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~-------ve~sNLnRq~~~~~di-G~~Kv~-~a~~~l~~in 173 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDT-------LELSNLNRVPAGVFDL-GVNKAV-VAARRIAELD 173 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCE-------EcccccccccCChhhc-ccHHHH-HHHHHHHHHC
Confidence 788999999999 99999999999994 555 777642 2222222110000001 001111 1112233444
Q ss_pred cceeeeccccCcccccccccc--cceEEEecCCCCCCH-HHHHHHHhCCceEeccccccccCcc
Q 014463 296 CDVLVPCALGGVLNKENAADV--KAKFIIEAANHPTDP-EADEILSKKGVVILPDIYANSGGVT 356 (424)
Q Consensus 296 ~DIliPaA~~~~It~~na~~i--~akiIvEgAN~p~t~-eA~~iL~~rGI~viPD~laNaGGVi 356 (424)
.+|=|-+ +..-||++|++.+ ++.+|+++.-+.-+. ...+.-.++||.+|=.. .++|.+
T Consensus 174 p~i~v~~-~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~--~~~g~~ 234 (722)
T PRK07877 174 PYLPVEV-FTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMAT--SDRGLL 234 (722)
T ss_pred CCCEEEE-EeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCc
Confidence 4444433 3345678888875 788888888775332 22345568898887443 344554
No 196
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.33 E-value=0.19 Score=45.81 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=28.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+...+|+|.|.|+||..+++.+...|++++ +.|.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence 566899999999999999999999999998 5554
No 197
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.30 E-value=0.37 Score=48.14 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+.|..|++.. +++++.+++|++++|.| ..-||+-++.+|.++++.|. ++++
T Consensus 138 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGILEL----LKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHHHH----HHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 36888887655 56779999999999999 58899999999999999987 6765
No 198
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=92.13 E-value=0.21 Score=50.93 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=30.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++|+|+|+|++|+..|+.|.+.|.+|+ +.+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vv-v~~r 48 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVV-VGLR 48 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEE-EEEC
Confidence 889999999999999999999999999987 4443
No 199
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.03 E-value=0.65 Score=45.04 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC----EEEEEE-cC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG----KVVAVS-DI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVs-D~ 252 (424)
+||.++|+|++|+.+++.|.+.|. +|+ ++ |.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence 479999999999999999999887 666 44 54
No 200
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.42 Score=48.32 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=30.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++.=|+|.|.|.||+|++.+|.+.|.+=+-|.|-
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEech
Confidence 78889999999999999999999999765557664
No 201
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=91.94 E-value=0.48 Score=46.61 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=61.1
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCcccccccce
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHECDV 298 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~DI 298 (424)
+||+|.|+|++|+..++.|.+. +..+++|++.... ..+..+.... +....+ .+++ ..++|+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~--------~~~~~~~~~~--------~~~~~~d~~~l-~~~~Dv 64 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS--------IDAVRRALGE--------AVRVVSSVDAL-PQRPDL 64 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC--------HHHHhhhhcc--------CCeeeCCHHHh-ccCCCE
Confidence 4899999999999999988764 6888888864321 1111111100 112222 2445 677999
Q ss_pred eeeccccCccccccccc-c--cceEEEecCCCCCCH----HHHHHHHhCCceEe
Q 014463 299 LVPCALGGVLNKENAAD-V--KAKFIIEAANHPTDP----EADEILSKKGVVIL 345 (424)
Q Consensus 299 liPaA~~~~It~~na~~-i--~akiIvEgAN~p~t~----eA~~iL~~rGI~vi 345 (424)
++.|+..... .+.+.. + +..++++-.=....+ +..+..++.|..+.
T Consensus 65 Vve~t~~~~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~ 117 (265)
T PRK13303 65 VVECAGHAAL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLH 117 (265)
T ss_pred EEECCCHHHH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEE
Confidence 9999876533 344433 2 456777521101122 23345667786543
No 202
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.92 E-value=4.7 Score=40.27 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463 200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND 279 (424)
Q Consensus 200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~ 279 (424)
+.|...+++ ..+.+++++++.|.|.|..++.++-.|...|++-|.|.+.+-. ..++..++.++-+. .
T Consensus 108 ~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~-------~~~ka~~la~~~~~--~ 174 (288)
T PRK12749 108 GTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE-------FFDKALAFAQRVNE--N 174 (288)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc-------HHHHHHHHHHHhhh--c
Confidence 677777665 4577889999999999999999999898899866668887421 11232332221110 0
Q ss_pred CCC-CeeecCCc---cc--ccccceeeeccccCc---cccc---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463 280 FQG-GNAMDLND---LL--VHECDVLVPCALGGV---LNKE---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVILP 346 (424)
Q Consensus 280 ~~~-~~~i~~~~---ll--~~~~DIliPaA~~~~---It~~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP 346 (424)
++. ....+.++ +. -.++|++|-|.--+. .+.. ....+ ...+|.+-.-+|..-.--+.-+++|..+++
T Consensus 175 ~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 175 TDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTID 254 (288)
T ss_pred cCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHHHCCCeEEC
Confidence 100 01111111 11 136899997753222 1110 11112 235777888887533334455677776554
No 203
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=91.90 E-value=4.3 Score=40.65 Aligned_cols=130 Identities=19% Similarity=0.200 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc
Q 014463 200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND 279 (424)
Q Consensus 200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~ 279 (424)
|.|+..++++. ..+.+.+|++++|.|.|-.++.++..|.+.|++=|.|.+.+-. -.++|.+...+.+.
T Consensus 108 ~~G~~~~L~~~--~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~-------ra~~La~~~~~~~~--- 175 (283)
T COG0169 108 GIGFLRALKEF--GLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRE-------RAEELADLFGELGA--- 175 (283)
T ss_pred HHHHHHHHHhc--CCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHH-------HHHHHHHHhhhccc---
Confidence 67766664432 1124578999999999999999999999999643338776421 11233333332221
Q ss_pred CCCCeeecCCccccc-ccceeeeccccCcccc-----cccccc-cceEEEecCCCCC-CHHHHHHHHhCCceE
Q 014463 280 FQGGNAMDLNDLLVH-ECDVLVPCALGGVLNK-----ENAADV-KAKFIIEAANHPT-DPEADEILSKKGVVI 344 (424)
Q Consensus 280 ~~~~~~i~~~~ll~~-~~DIliPaA~~~~It~-----~na~~i-~akiIvEgAN~p~-t~eA~~iL~~rGI~v 344 (424)
+... ....++-.. +.|++|=|.--+.-.. -+...+ +..++.+-.-+|. || --+.-+++|..+
T Consensus 176 ~~~~--~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~Tp-lL~~A~~~G~~~ 245 (283)
T COG0169 176 AVEA--AALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLETP-LLREARAQGAKT 245 (283)
T ss_pred cccc--ccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCH-HHHHHHHcCCeE
Confidence 1001 111122222 7999997753221111 112222 6678889998885 55 334566777663
No 204
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=91.89 E-value=0.46 Score=47.93 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHh-cC
Q 014463 198 ATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKS-NK 275 (424)
Q Consensus 198 aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~-~g 275 (424)
+||.-.++++. +.|..=.|.+|+|.+ .|.||+.+.++-.-+|++||+++-+.- + .++..+ -|
T Consensus 133 mpG~TAY~gLl----~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~e-----------K-~~~l~~~lG 196 (340)
T COG2130 133 MPGLTAYFGLL----DIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAE-----------K-CDFLTEELG 196 (340)
T ss_pred CchHHHHHHHH----HhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHH-----------H-HHHHHHhcC
Confidence 55555455533 456666799999999 499999988887789999999987731 1 122222 11
Q ss_pred --CcccCCCCeeecCCcccc----cccceeeeccccCccccccccc--ccceEEEecC
Q 014463 276 --SLNDFQGGNAMDLNDLLV----HECDVLVPCALGGVLNKENAAD--VKAKFIIEAA 325 (424)
Q Consensus 276 --~v~~~~~~~~i~~~~ll~----~~~DIliPaA~~~~It~~na~~--i~akiIvEgA 325 (424)
...+|... +-.+-|. --.||++.+-.+.+.+ .-... .+||+++.|+
T Consensus 197 fD~~idyk~~---d~~~~L~~a~P~GIDvyfeNVGg~v~D-Av~~~ln~~aRi~~CG~ 250 (340)
T COG2130 197 FDAGIDYKAE---DFAQALKEACPKGIDVYFENVGGEVLD-AVLPLLNLFARIPVCGA 250 (340)
T ss_pred CceeeecCcc---cHHHHHHHHCCCCeEEEEEcCCchHHH-HHHHhhccccceeeeee
Confidence 11122111 1111221 2469999996555443 33333 5899999997
No 205
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.76 E-value=0.44 Score=48.94 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678899999999999999999999997666688865
No 206
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.69 E-value=0.27 Score=46.56 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++|++|.|+|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999988443
No 207
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.67 E-value=0.46 Score=48.65 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=33.6
Q ss_pred HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++.+.. .|.+|+|.|+|-+|..++++....|++|++++-+
T Consensus 159 lk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 159 LKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred hhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4443432 5889999999999999999999999999987544
No 208
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.63 E-value=5.3 Score=41.61 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=28.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.||..+|..|.+.|.+|++ .|.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDID 32 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EECC
Confidence 3799999999999999999999999884 5653
No 209
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=91.55 E-value=2.9 Score=42.03 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=27.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|.|.|.+|+..|..|.+.|..|+. .|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~-~~r 33 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTL-IGR 33 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEE-Eec
Confidence 5799999999999999999999998874 444
No 210
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.53 E-value=0.45 Score=49.27 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999997555588865
No 211
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=91.52 E-value=2.9 Score=42.82 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHC-CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~ 252 (424)
.+|+|.|||.+|+.+.+.+.+. ..+++++-|.
T Consensus 3 ikigInG~GRiGr~v~r~~~~~~~~~ivaind~ 35 (334)
T PRK08955 3 IKVGINGFGRIGRLALRAAWDWPELEFVQINDP 35 (334)
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999999999998754 5899988774
No 212
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=91.50 E-value=1.8 Score=45.77 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=27.7
Q ss_pred CeEEEEecChHHHHHHHHHHHC---CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH---GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~---GakVVaVsD~ 252 (424)
.||+|-|||-+|+.+.|.+.+. ...||+|-|.
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 6899999999999999987643 5899999774
No 213
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=91.33 E-value=0.33 Score=49.64 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=29.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
...+|+|+||||.|+..|+.|.++|..++ .+|..
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li-~hsRs 84 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLI-CHSRS 84 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeE-ecCcc
Confidence 34689999999999999999999999998 56653
No 214
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.31 E-value=0.55 Score=44.89 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=40.2
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSN 274 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~ 274 (424)
.+++|++|+|.|.|.||..=+++|.+.|++|+-+++.- .+++..+.++.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~----------~~el~~~~~~~ 56 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF----------EPELKALIEEG 56 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc----------cHHHHHHHHhc
Confidence 46899999999999999999999999999999888763 24555555544
No 215
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=91.28 E-value=3.4 Score=44.14 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHC-----CCEEEEEEcCCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDITG 254 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~~G 254 (424)
.+.++|+|-|||-+|+.++|.+.+. +.+||||-+..+
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 5678999999999999999998764 589999977544
No 216
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.28 E-value=0.28 Score=46.54 Aligned_cols=35 Identities=14% Similarity=0.312 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++|++|.|.|.|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35889999999999999999999999999988443
No 217
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=91.23 E-value=0.35 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=29.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
|+|++|+|+|+|++|+.+|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57899999999999999999999999887633343
No 218
>PRK06046 alanine dehydrogenase; Validated
Probab=91.22 E-value=1.3 Score=44.92 Aligned_cols=115 Identities=19% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec-CCccccccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD-LNDLLVHEC 296 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~-~~~ll~~~~ 296 (424)
.-++++|.|.|..|++.++.|. ..+.+.|.|.|.+ .+...++.++-..-.++ .....+ .+++++ +
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~----------~~~~~~~~~~~~~~~~~-~v~~~~~~~~~l~--a 194 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT----------KSSAEKFVERMSSVVGC-DVTVAEDIEEACD--C 194 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC----------HHHHHHHHHHHHhhcCc-eEEEeCCHHHHhh--C
Confidence 3468999999999999998886 4678889888874 23333333221100010 011122 245554 9
Q ss_pred ceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463 297 DVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI 348 (424)
Q Consensus 297 DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~ 348 (424)
||++=|.-. -.+..+..+. .+-+..=|++-|-..|.+..+-++.-+|+ |.
T Consensus 195 DiVv~aTps~~P~~~~~~l~~-g~hV~~iGs~~p~~~El~~~~~~~a~vvv-D~ 246 (326)
T PRK06046 195 DILVTTTPSRKPVVKAEWIKE-GTHINAIGADAPGKQELDPEILLRAKVVV-DD 246 (326)
T ss_pred CEEEEecCCCCcEecHHHcCC-CCEEEecCCCCCccccCCHHHHhCCcEEE-CC
Confidence 999977542 2344444433 66788889999866666654444553333 54
No 219
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.22 E-value=0.71 Score=46.59 Aligned_cols=115 Identities=21% Similarity=0.174 Sum_probs=65.4
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCccc-CCCCeeecCCcccc---
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLND-FQGGNAMDLNDLLV--- 293 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~-~~~~~~i~~~~ll~--- 293 (424)
+..+|+|+|.|++|...+..+. ..+.++++++|.+. + . +-++..++.| +.. |. +-+++++
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~-----e---s-~gla~A~~~G-i~~~~~-----~ie~LL~~~~ 67 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDP-----E---S-DGLARARRLG-VATSAE-----GIDGLLAMPE 67 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCCh-----h---h-HHHHHHHHcC-CCcccC-----CHHHHHhCcC
Confidence 4578999999999998666554 46799999998742 1 1 1222233322 211 11 1144554
Q ss_pred -cccceeeeccccCcccccccccc---cceEEEec--CCCCC-CHH--HHHHHH--hCCceEecccc
Q 014463 294 -HECDVLVPCALGGVLNKENAADV---KAKFIIEA--ANHPT-DPE--ADEILS--KKGVVILPDIY 349 (424)
Q Consensus 294 -~~~DIliPaA~~~~It~~na~~i---~akiIvEg--AN~p~-t~e--A~~iL~--~rGI~viPD~l 349 (424)
.++|+.+-|. ++..+.+++.+. ++.+|.+- +++|+ -|+ .++.+. ..++...|.-.
T Consensus 68 ~~dIDiVf~AT-~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~a 133 (302)
T PRK08300 68 FDDIDIVFDAT-SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQA 133 (302)
T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEECccHH
Confidence 4689988886 445666666553 55566553 34552 232 234444 34666555533
No 220
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=91.14 E-value=0.44 Score=55.48 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=70.3
Q ss_pred CCCeEEEEecChHHHHHHHHHHHC-CCE------------EEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCC--
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEH-GGK------------VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGG-- 283 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~-Gak------------VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~-- 283 (424)
+.++|+|.|.|.||+..++.|.+. ++. +|+|+|.+ .+...+..++ +++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~----------~~~a~~la~~------~~~~~~ 631 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY----------LKDAKETVEG------IENAEA 631 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC----------HHHHHHHHHh------cCCCce
Confidence 467999999999999999999864 333 57788874 3344333332 2221
Q ss_pred ee--e-cCCcccc--cccceeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463 284 NA--M-DLNDLLV--HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 349 (424)
Q Consensus 284 ~~--i-~~~~ll~--~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l 349 (424)
.. + +.+++.. .++|+.|=|. +...+.+.|.. -+.-+++|.-..+-+.+.++..+++|+.++|++-
T Consensus 632 v~lDv~D~e~L~~~v~~~DaVIsal-P~~~H~~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~G 704 (1042)
T PLN02819 632 VQLDVSDSESLLKYVSQVDVVISLL-PASCHAVVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMG 704 (1042)
T ss_pred EEeecCCHHHHHHhhcCCCEEEECC-CchhhHHHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCc
Confidence 11 2 2245554 4799988774 34455554443 3556777762222222334567788999888765
No 221
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.07 E-value=0.77 Score=45.94 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=44.3
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH--CCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE--HGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~--~GakVVaVsD~~ 253 (424)
.++|..|++.. +++++.+++|++++|+| ...||.-++.+|.+ +++.|. ++.++
T Consensus 138 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHL----LRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG 193 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence 47899988766 45679999999999999 57899999999988 788876 77763
No 222
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=90.95 E-value=0.76 Score=53.13 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
..|++|+|+|.|..|..+|..|..+|++|+ |.|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 578999999999999999999999999998 6664
No 223
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.86 E-value=1.2 Score=49.22 Aligned_cols=111 Identities=21% Similarity=0.224 Sum_probs=66.5
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc----cc
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV----HE 295 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~----~~ 295 (424)
..+|.|.|||.+|+.+++.|.+.|.+++ +.|. |.+.+.+.++. |.-.-|-+ .+..++|+ .+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~----------d~~~v~~~~~~-g~~v~~GD---at~~~~L~~agi~~ 464 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDH----------DPDHIETLRKF-GMKVFYGD---ATRMDLLESAGAAK 464 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEEC----------CHHHHHHHHhc-CCeEEEEe---CCCHHHHHhcCCCc
Confidence 3689999999999999999999999988 5576 34555444432 21111111 12233442 36
Q ss_pred cceeeeccccCcccc---cccccc--cceEEEecCCCCCCHHHHHHHHhCCceEe-cccc
Q 014463 296 CDVLVPCALGGVLNK---ENAADV--KAKFIIEAANHPTDPEADEILSKKGVVIL-PDIY 349 (424)
Q Consensus 296 ~DIliPaA~~~~It~---~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~vi-PD~l 349 (424)
+|.+|-|.-....|. .++++. +.++|+=. .+++..+.|++.|+-.+ |...
T Consensus 465 A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa----~d~~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 465 AEVLINAIDDPQTSLQLVELVKEHFPHLQIIARA----RDVDHYIRLRQAGVEKPERETF 520 (621)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEE----CCHHHHHHHHHCCCCEEehhhH
Confidence 788777753333222 223332 45677744 34566678999998644 5443
No 224
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=90.75 E-value=0.53 Score=48.59 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998656577865
No 225
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.71 E-value=0.89 Score=38.08 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=57.2
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccccce
Q 014463 223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHECDV 298 (424)
Q Consensus 223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~DI 298 (424)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|.+ .+...+..++. +.-+. +.. ++.+.| -.++|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d----------~~~~~~~~~~~--~~~i~-gd~-~~~~~l~~a~i~~a~~ 65 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD----------PERVEELREEG--VEVIY-GDA-TDPEVLERAGIEKADA 65 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEESS----------HHHHHHHHHTT--SEEEE-S-T-TSHHHHHHTTGGCESE
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC----------cHHHHHHHhcc--ccccc-ccc-hhhhHHhhcCccccCE
Confidence 6799999999999999999777888 55552 34444444432 11110 111 112222 246777
Q ss_pred eeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCce
Q 014463 299 LVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGVV 343 (424)
Q Consensus 299 liPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI~ 343 (424)
++-+.-....| ...++++ ..++|+..- +++..+.|++-|+-
T Consensus 66 vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d 111 (116)
T PF02254_consen 66 VVILTDDDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGAD 111 (116)
T ss_dssp EEEESSSHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-S
T ss_pred EEEccCCHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcC
Confidence 77665433222 2233332 467887653 46667888888874
No 226
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=90.68 E-value=0.78 Score=46.90 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=57.7
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVH 294 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~ 294 (424)
|.++.|+||.|.|+|..|+.+|+.|...|..|. -+..... -.+...++- ++.++-++++ .
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~-y~~r~~~-------~~~~~~~~~-----------~~~~d~~~~~-~ 216 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL-YHSRTQL-------PPEEAYEYY-----------AEFVDIEELL-A 216 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhccceee-eecccCC-------chhhHHHhc-----------ccccCHHHHH-h
Confidence 456999999999999999999999999994443 3333221 111111111 1122333333 5
Q ss_pred ccceeeecccc-----Ccccccccccc-cceEEEecCCCCC-CHHHH
Q 014463 295 ECDVLVPCALG-----GVLNKENAADV-KAKFIIEAANHPT-DPEAD 334 (424)
Q Consensus 295 ~~DIliPaA~~-----~~It~~na~~i-~akiIvEgAN~p~-t~eA~ 334 (424)
++|+++-|--- +.||.+-.... +.-+||..|=+++ ..++.
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l 263 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEAL 263 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHH
Confidence 77888876522 23333333333 3347777777774 55444
No 227
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.66 E-value=0.34 Score=49.29 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=64.6
Q ss_pred CCCCCCCeEEEEecChHHHHHHHHH-HHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCccc
Q 014463 215 GKSISNMKFAIQGFGNVGSWAAKFF-HEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLL 292 (424)
Q Consensus 215 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll 292 (424)
+.++.|++|.|.|+|++|+.+|+.| ...|.+|++ .|.+.. ... .. .+ +.. +.++++
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~~~~---------~~~----~~--~~------~~~~~l~ell 198 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDPFPN---------AKA----AT--YV------DYKDTIEEAV 198 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECCCcc---------HhH----Hh--hc------cccCCHHHHH
Confidence 3458999999999999999999999 557889884 444320 000 00 01 111 224444
Q ss_pred ccccceeeeccccCc-----cccccccccc-ceEEEecCCCCC-CH-HHHHHHHhCCce
Q 014463 293 VHECDVLVPCALGGV-----LNKENAADVK-AKFIIEAANHPT-DP-EADEILSKKGVV 343 (424)
Q Consensus 293 ~~~~DIliPaA~~~~-----It~~na~~i~-akiIvEgAN~p~-t~-eA~~iL~~rGI~ 343 (424)
.+||+++-|.-... ++.+....++ -.+++.-+-+.. +. +..+.|.+..|.
T Consensus 199 -~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 199 -EGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred -HhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 47899998864433 3333333332 348888888874 33 334667766663
No 228
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.59 E-value=0.36 Score=41.48 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=27.3
Q ss_pred eEEEEe-cChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463 222 KFAIQG-FGNVGSWAAKFFHEH-GGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqG-fGnVG~~~a~~L~~~-GakVVaVsD~~ 253 (424)
||+|.| .|.+|+.++++|.++ ...++.+..++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~ 34 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS 34 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec
Confidence 689999 999999999999874 57888877765
No 229
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=90.49 E-value=0.53 Score=44.40 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCCC
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDITG 254 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~G 254 (424)
-||=|-+-.+++.+.+|.+ +-.+++|+|.||.|++++.+- .+.|.+|+++.|.+.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~ 120 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP 120 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence 4566666666666677876 446899999999999999643 478999999999863
No 230
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=90.09 E-value=0.3 Score=49.15 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCce-e---CCCCCCHHHHHHHHHh
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAI-K---NPNGIDVPALLKYKKS 273 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i-~---~~~GlDi~~L~~~~~~ 273 (424)
|+|++|+|+|+|+=|.+=|..|.+.|..|+ |.=..|.. + .++|+++..+.+..+.
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k~ 74 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAKR 74 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhhc
Confidence 899999999999999999999999999976 76666655 3 4678876666655543
No 231
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.05 E-value=0.82 Score=49.61 Aligned_cols=104 Identities=15% Similarity=0.209 Sum_probs=58.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----cccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~~ 296 (424)
-++.|.|+|++|+.+++.|.++|..++ +.|.+ .+.+.+.++..-.+. + ++ .++++.+ -.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d----------~~~~~~~~~~g~~~i-~--GD-~~~~~~L~~a~i~~a 482 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETS----------RTRVDELRERGIRAV-L--GN-AANEEIMQLAHLDCA 482 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEECC----------HHHHHHHHHCCCeEE-E--cC-CCCHHHHHhcCcccc
Confidence 478999999999999999999999988 55653 444444443211111 0 01 1122322 2367
Q ss_pred ceeeeccccCcccc---ccccc--ccceEEEecCCCCCCHHHHHHHHhCCce
Q 014463 297 DVLVPCALGGVLNK---ENAAD--VKAKFIIEAANHPTDPEADEILSKKGVV 343 (424)
Q Consensus 297 DIliPaA~~~~It~---~na~~--i~akiIvEgAN~p~t~eA~~iL~~rGI~ 343 (424)
|.++=+.-.+.-|. ..+.+ -.+++|+=.. +++..+.|++.|+-
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~----~~~~~~~l~~~Gad 530 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAH----YDDEVAYITERGAN 530 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHcCCC
Confidence 76654432221110 01111 2457777532 46777788888863
No 232
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.05 E-value=0.84 Score=47.54 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 577899999999999999999999998666688854
No 233
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.03 E-value=5.2 Score=39.46 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=64.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCC----CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG----GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHE 295 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G----akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~ 295 (424)
.+|+|+|.|++|+.+++.|.+.| .+|+.+..+. .+.+...... ++..... +..++ ..+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~----------~~~~~~l~~~------~~~~~~~~~~~e~-~~~ 64 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK----------NEHFNQLYDK------YPTVELADNEAEI-FTK 64 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc----------HHHHHHHHHH------cCCeEEeCCHHHH-Hhh
Confidence 37999999999999999999888 5676443321 1222222221 1112211 22233 348
Q ss_pred cceeeeccccCcccccccc----ccc-ceEEEecCCCCCCHHHHHHHHh-CCceEecccccc
Q 014463 296 CDVLVPCALGGVLNKENAA----DVK-AKFIIEAANHPTDPEADEILSK-KGVVILPDIYAN 351 (424)
Q Consensus 296 ~DIliPaA~~~~It~~na~----~i~-akiIvEgAN~p~t~eA~~iL~~-rGI~viPD~laN 351 (424)
+|++|-|.-...+. +-+. .++ -++|+--+|+-...+-.+.|.. +=|.++|-.-+-
T Consensus 65 aDvVilavpp~~~~-~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~ 125 (277)
T PRK06928 65 CDHSFICVPPLAVL-PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSA 125 (277)
T ss_pred CCEEEEecCHHHHH-HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHH
Confidence 99999886543322 2222 222 2477778888666676777644 334778865443
No 234
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.99 E-value=1.1 Score=44.23 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=43.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccceee
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDVLV 300 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DIli 300 (424)
++|+|+|.|.+|+.++..|.++|.+|+ +.|.+ .+.+.+..+ .+.+... .++.+. -.+||++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~~----------~~~~~~a~~-~g~~~~~-----~~~~~~-~~~aDlVi 62 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVSRR----------ESTCERAIE-RGLVDEA-----STDLSL-LKDCDLVI 62 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHHHH-CCCcccc-----cCCHhH-hcCCCEEE
Confidence 379999999999999999999999877 44542 233333222 2322211 111222 25799999
Q ss_pred eccccCc
Q 014463 301 PCALGGV 307 (424)
Q Consensus 301 PaA~~~~ 307 (424)
.|.-...
T Consensus 63 lavp~~~ 69 (279)
T PRK07417 63 LALPIGL 69 (279)
T ss_pred EcCCHHH
Confidence 9975443
No 235
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=89.92 E-value=0.8 Score=43.45 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=54.6
Q ss_pred CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcC-Ccc--cCCC-CeeecCCcccccc
Q 014463 221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNK-SLN--DFQG-GNAMDLNDLLVHE 295 (424)
Q Consensus 221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g-~v~--~~~~-~~~i~~~~ll~~~ 295 (424)
++|+|+| .|++|+.+++.|.+.|.+|+ +.+.+ .+.+.+..+... .+. ++.. ....+..+. -.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~----------~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-~~~ 68 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRD----------LEKAEEAAAKALEELGHGGSDIKVTGADNAEA-AKR 68 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcC----------HHHHHHHHHHHHhhccccCCCceEEEeChHHH-Hhc
Confidence 4799997 89999999999999999887 55543 222222222110 010 1110 011122223 247
Q ss_pred cceeeeccccCcccc---cccccccceEEEecCCCCC
Q 014463 296 CDVLVPCALGGVLNK---ENAADVKAKFIIEAANHPT 329 (424)
Q Consensus 296 ~DIliPaA~~~~It~---~na~~i~akiIvEgAN~p~ 329 (424)
+|++|-|.-...+.+ +-.+.++-++|+..+|+..
T Consensus 69 aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi~ 105 (219)
T TIGR01915 69 ADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPLA 105 (219)
T ss_pred CCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCce
Confidence 899988864443321 1122344589999999853
No 236
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.82 E-value=1 Score=45.17 Aligned_cols=53 Identities=25% Similarity=0.199 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~ 253 (424)
.+.|..|++.. +++++.+++|++++|+| ...||.-++.+|.+ ++|.|. +++++
T Consensus 137 ~PcTp~av~~l----L~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVMTL----LERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 46898887665 56679999999999999 57799999999998 789887 66654
No 237
>PRK08618 ornithine cyclodeaminase; Validated
Probab=89.75 E-value=3.9 Score=41.39 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=66.4
Q ss_pred CCCeEEEEecChHHHHHHHHHH-HCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCC-CeeecC-Ccccccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFH-EHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQG-GNAMDL-NDLLVHE 295 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~-~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~-~~~i~~-~~ll~~~ 295 (424)
..++++|.|.|..|+..+..+. ..+.+-|.|.|.+ .+...++.++-. ..|+- ....++ ++.+ .+
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~----------~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~-~~ 192 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT----------FEKAYAFAQEIQ--SKFNTEIYVVNSADEAI-EE 192 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC----------HHHHHHHHHHHH--HhcCCcEEEeCCHHHHH-hc
Confidence 5679999999999998887764 4688888888774 233333322110 01110 112222 3333 48
Q ss_pred cceeeecccc--CcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccc
Q 014463 296 CDVLVPCALG--GVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDI 348 (424)
Q Consensus 296 ~DIliPaA~~--~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~ 348 (424)
+||+|=|.-. -.|+ +-+ +-.+-++.=|++.|--.|.+..+-++.-.++-|.
T Consensus 193 aDiVi~aT~s~~p~i~-~~l-~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 193 ADIIVTVTNAKTPVFS-EKL-KKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred CCEEEEccCCCCcchH-Hhc-CCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 9999977642 2344 333 3367788889998865555543333433333344
No 238
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.65 E-value=1.5 Score=34.59 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=34.6
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHH
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~ 266 (424)
+|+|+|.|.+|-.+|..|.+.|.+|. +.+....+. ..+|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999987 777766665 4566543
No 239
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.39 E-value=0.75 Score=43.62 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHH--HHCCCEEEEEEcCC
Q 014463 200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFF--HEHGGKVVAVSDIT 253 (424)
Q Consensus 200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~GakVVaVsD~~ 253 (424)
||=|...++.+=+.+|.. ...+|+|.|.|++|..+++.+ .+.|.+++++.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455555555444455655 557999999999999999864 35789999999874
No 240
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.26 E-value=1.5 Score=43.26 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=28.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 589999999999999999999999987 56653
No 241
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=89.18 E-value=0.33 Score=49.50 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=32.2
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEE
Q 014463 214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVA 248 (424)
Q Consensus 214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVa 248 (424)
+|.++.|||++|.|||.+|+.+|+.+...|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 35679999999999999999999999999999985
No 242
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.02 E-value=0.7 Score=48.93 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=35.2
Q ss_pred HHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 212 AEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 212 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..++.++++++|.|.|.|..|..+|+.|.++|.+|+ ++|.+
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~ 48 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG 48 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 355667889999999999999999999999999977 66753
No 243
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=89.02 E-value=1.6 Score=39.27 Aligned_cols=70 Identities=17% Similarity=0.303 Sum_probs=42.4
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCe-----eecCC--ccccc
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGN-----AMDLN--DLLVH 294 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~-----~i~~~--~ll~~ 294 (424)
+|+|.|.|+.|..+|..|.+.|.+|. +.+.+ .+.+.++.+.+.....+++.+ .++++ +.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~~----------~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWGRD----------EEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EETSC----------HHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEecc----------HHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999998776 54442 244445554444333344322 22221 222 3
Q ss_pred ccceeeecc
Q 014463 295 ECDVLVPCA 303 (424)
Q Consensus 295 ~~DIliPaA 303 (424)
++|+++-|-
T Consensus 69 ~ad~Iiiav 77 (157)
T PF01210_consen 69 DADIIIIAV 77 (157)
T ss_dssp T-SEEEE-S
T ss_pred cccEEEecc
Confidence 678887663
No 244
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.97 E-value=1.2 Score=44.69 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=60.1
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCCCceeCCCCCCHHHHHHH
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDITGAIKNPNGIDVPALLKY 270 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~G~i~~~~GlDi~~L~~~ 270 (424)
.+.|..|++.. ++++|.+++|++|+|+| ...||+-++.+|.++ ++.|. ++.++.. |+. +
T Consensus 133 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~T~-------~l~---~- 196 (287)
T PRK14181 133 IPCTPAGIIEL----LKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQSE-------NLT---E- 196 (287)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCCCC-------CHH---H-
Confidence 36899888765 55679999999999999 577999999999988 78876 7766320 111 1
Q ss_pred HHhcCCcccCCCCeeecCCcccccccceeeeccc-cCccccccccc
Q 014463 271 KKSNKSLNDFQGGNAMDLNDLLVHECDVLVPCAL-GGVLNKENAAD 315 (424)
Q Consensus 271 ~~~~g~v~~~~~~~~i~~~~ll~~~~DIliPaA~-~~~It~~na~~ 315 (424)
+...+||+|-|.. .+.|+.+.++.
T Consensus 197 ---------------------~~~~ADIvV~AvG~p~~i~~~~ik~ 221 (287)
T PRK14181 197 ---------------------ILKTADIIIAAIGVPLFIKEEMIAE 221 (287)
T ss_pred ---------------------HHhhCCEEEEccCCcCccCHHHcCC
Confidence 1246788887764 56677666664
No 245
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=88.90 E-value=0.71 Score=47.02 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=30.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEH-GGKVVAVSDIT 253 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~-GakVVaVsD~~ 253 (424)
..||+|.|+|++|+..++.+.+. +..+++|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999988764 89999999986
No 246
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.79 E-value=1.2 Score=44.91 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHH----CCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHE----HGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~----~GakVVaVsD~~ 253 (424)
.++|..|++ ++++.++.+++|++|+|+| ...||+-++.+|.+ +++.|. ++.++
T Consensus 139 ~PcTp~ail----~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~ 196 (295)
T PRK14174 139 VSCTPYGIL----ELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSA 196 (295)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCC
Confidence 468998874 4566778999999999999 57799999999987 688876 66653
No 247
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.78 E-value=0.5 Score=50.89 Aligned_cols=32 Identities=25% Similarity=0.356 Sum_probs=28.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999988 77764
No 248
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=88.75 E-value=20 Score=37.90 Aligned_cols=33 Identities=36% Similarity=0.412 Sum_probs=27.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..++|+|+|.|.||..+|..|.+ |..|+ +.|.+
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~-g~D~~ 37 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVV-GFDVN 37 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc-CCEEE-EEeCC
Confidence 34789999999999999999876 68888 45653
No 249
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.59 E-value=0.49 Score=46.84 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=28.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 579999999999999999999999887 55653
No 250
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.51 E-value=0.47 Score=51.08 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=28.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|+.+|..|...|..|+ +.|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 579999999999999999999999988 66764
No 251
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=88.42 E-value=0.48 Score=41.35 Aligned_cols=34 Identities=32% Similarity=0.347 Sum_probs=29.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+||+|.|.|.+|+.+++.|...|..-+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998655588864
No 252
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.34 E-value=1.1 Score=41.20 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.6
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998645588865
No 253
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.11 E-value=0.85 Score=47.65 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=32.1
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++++.|.|.|..|..+|++|++.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3678999999999999999999999999987 67854
No 254
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.09 E-value=12 Score=37.10 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 278 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~ 278 (424)
=++|+..+++. .+.+ .++++.|.|.|-.++.++-.|.+.|++-|.|.+.+ .++..++.+.-+ .
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~~a~~la~~~~--~ 168 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN----------EKTGKALAELYG--Y 168 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC----------HHHHHHHHHHhC--C
Confidence 36777777653 3554 35699999999999999999999998755588874 233333333211 0
Q ss_pred cCCCCeeecCCcccccccceeeeccccCcccccc-----c--ccc-cceEEEecCCCCCCHHHHHHHHhCCceEec
Q 014463 279 DFQGGNAMDLNDLLVHECDVLVPCALGGVLNKEN-----A--ADV-KAKFIIEAANHPTDPEADEILSKKGVVILP 346 (424)
Q Consensus 279 ~~~~~~~i~~~~ll~~~~DIliPaA~~~~It~~n-----a--~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~viP 346 (424)
.+ . +++...++|++|=|.--+.-...+ . ..+ +..+|.+-.-+|..-.--+.-+++|..++.
T Consensus 169 ~~------~-~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 169 EW------R-PDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAETPLIRYARARGKTVIT 237 (272)
T ss_pred cc------h-hhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeC
Confidence 11 0 112234589999775322211000 1 112 235788888777533333455677776543
No 255
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=88.08 E-value=0.76 Score=43.41 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+.++|+|.|.|.+|+.+|..|...|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 788999999999999999999999998544477865
No 256
>PLN02712 arogenate dehydrogenase
Probab=88.08 E-value=0.89 Score=50.69 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=32.9
Q ss_pred hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 214 HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 214 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+.++++++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~-~~dr 400 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVL-AYSR 400 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEE-EEEC
Confidence 4567889999999999999999999999999988 4454
No 257
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.98 E-value=0.73 Score=48.97 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|++|+|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 568899999999999999999999999988 78864
No 258
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.97 E-value=2.1 Score=44.57 Aligned_cols=121 Identities=19% Similarity=0.226 Sum_probs=65.9
Q ss_pred HHHHHHHhC-CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee
Q 014463 207 TEALLAEHG-KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA 285 (424)
Q Consensus 207 ~~~~~~~~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~ 285 (424)
++.+.+.++ ..+..+++.|.|+|.+|+.+++.|.+.|..|+ +.|.+ .+.+.++.++...+.-+.+ ..
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~~----------~~~~~~~~~~~~~~~~i~g-d~ 284 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIERD----------PERAEELAEELPNTLVLHG-DG 284 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC----------HHHHHHHHHHCCCCeEEEC-CC
Confidence 344444343 33667899999999999999999999999988 55653 3444444443211110100 11
Q ss_pred ecCCcc---cccccceeeeccccCc---cccccccccc-ceEEEecCCCCCCHHHHHHHHhCCce
Q 014463 286 MDLNDL---LVHECDVLVPCALGGV---LNKENAADVK-AKFIIEAANHPTDPEADEILSKKGVV 343 (424)
Q Consensus 286 i~~~~l---l~~~~DIliPaA~~~~---It~~na~~i~-akiIvEgAN~p~t~eA~~iL~~rGI~ 343 (424)
.+.+.+ --.++|.+|-+.-... +....++.+. .++|+... +++-.++|+..|+-
T Consensus 285 ~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~~----~~~~~~~~~~~g~~ 345 (453)
T PRK09496 285 TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIALVN----RPAYVDLVEGLGID 345 (453)
T ss_pred CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEEEEC----CcchHHHHHhcCCC
Confidence 111112 1236787775543222 1112223332 36777653 34455678888873
No 259
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=87.87 E-value=1.6 Score=43.53 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 200 GLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 200 g~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.|...+++ ..+.+++++++.|.|.|..|+.++..|.+.|++-|.|.+.+
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 677666654 34556889999999999999999999999999744477764
No 260
>PLN02858 fructose-bisphosphate aldolase
Probab=87.86 E-value=1.9 Score=52.01 Aligned_cols=172 Identities=13% Similarity=0.099 Sum_probs=98.4
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECD 297 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~D 297 (424)
...+|.++|+|++|+.+|+.|.+.|..|. +.|.+ .++..++.+.+ +... ++.++ ..+||
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~-v~dr~----------~~~~~~l~~~G--------a~~~~s~~e~-a~~ad 62 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQ-AFEIS----------TPLMEKFCELG--------GHRCDSPAEA-AKDAA 62 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEE-EEcCC----------HHHHHHHHHcC--------CeecCCHHHH-HhcCC
Confidence 35689999999999999999999999986 55653 34444444432 2222 22233 34789
Q ss_pred eeeeccccCcccccc-------ccccc-ceEEEecC-CCC-CCHHHHHHHHhCC--ceEecccc------ccccCcc--h
Q 014463 298 VLVPCALGGVLNKEN-------AADVK-AKFIIEAA-NHP-TDPEADEILSKKG--VVILPDIY------ANSGGVT--V 357 (424)
Q Consensus 298 IliPaA~~~~It~~n-------a~~i~-akiIvEgA-N~p-~t~eA~~iL~~rG--I~viPD~l------aNaGGVi--~ 357 (424)
++|-|.......++. +..++ -++|++-. ..| ++.+..+.+.++| +.++=--+ +.+|-++ +
T Consensus 63 vVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imv 142 (1378)
T PLN02858 63 ALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIA 142 (1378)
T ss_pred EEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEE
Confidence 999886543322221 22222 25666655 444 4566777899999 76652111 2223221 1
Q ss_pred h----hHHHhhh----ccc-cCC-----CH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 014463 358 S----YFEWVQN----IQG-FMW-----EE----EKVNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFTLG 410 (424)
Q Consensus 358 s----~~E~~qn----~~~-~~w-----~~----e~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A 410 (424)
+ .+|-++. ... .++ -. .-+++-+...+..++.|.+..+++.|+++.....++.
T Consensus 143 GG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~ 213 (1378)
T PLN02858 143 SGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIIS 213 (1378)
T ss_pred cCCHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 1 1232221 111 111 11 2244445555556778888899999999887766553
No 261
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=87.82 E-value=1.2 Score=44.95 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=50.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECD 297 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~D 297 (424)
.+..+|..+|.|++|++.+..|.+.|++|+ |-|. +.++..++.+...++.+-| .|+ ..+||
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~sP-------aeV-ae~sD 93 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVANSP-------AEV-AEDSD 93 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhCCH-------HHH-HhhcC
Confidence 456899999999999999999999999998 7664 4777888877766666543 222 34667
Q ss_pred eeeec
Q 014463 298 VLVPC 302 (424)
Q Consensus 298 IliPa 302 (424)
++|-|
T Consensus 94 vvitm 98 (327)
T KOG0409|consen 94 VVITM 98 (327)
T ss_pred EEEEE
Confidence 66655
No 262
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.79 E-value=0.74 Score=45.68 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=30.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|++.+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 788999999999999999999999995444477765
No 263
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=87.79 E-value=1.3 Score=44.15 Aligned_cols=53 Identities=21% Similarity=0.215 Sum_probs=45.0
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecC-hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFG-NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.|-+|++.. +++.+.++.|++++|+|-+ -||+-++.+|...+++|. ||.+.
T Consensus 136 ~PCTp~gi~~l----l~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~ 189 (283)
T COG0190 136 LPCTPAGIMTL----LEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR 189 (283)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence 36899988765 5667899999999999965 489999999999999987 88874
No 264
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.76 E-value=0.61 Score=46.07 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=28.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 479999999999999999999999987 55653
No 265
>PRK11579 putative oxidoreductase; Provisional
Probab=87.60 E-value=3.5 Score=41.78 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=58.0
Q ss_pred CeEEEEecChHHH-HHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc-ccc
Q 014463 221 MKFAIQGFGNVGS-WAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV-HEC 296 (424)
Q Consensus 221 ~~vaIqGfGnVG~-~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~-~~~ 296 (424)
.||+|+|+|.+|. +.+..+.. .++++++|+|.+. ++.. + .|++.... +.++++. .++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~----------~~~~---~------~~~~~~~~~~~~ell~~~~v 65 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDA----------TKVK---A------DWPTVTVVSEPQHLFNDPNI 65 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCH----------HHHH---h------hCCCCceeCCHHHHhcCCCC
Confidence 5899999999997 45666654 4799999999752 2221 1 12222222 3356664 468
Q ss_pred ceeeeccccCccccccccc-c--cceEEEecCCCCC--C-HHHHHH---HHhCCceEe
Q 014463 297 DVLVPCALGGVLNKENAAD-V--KAKFIIEAANHPT--D-PEADEI---LSKKGVVIL 345 (424)
Q Consensus 297 DIliPaA~~~~It~~na~~-i--~akiIvEgAN~p~--t-~eA~~i---L~~rGI~vi 345 (424)
|+++-| .++..+.+-+.. + +.-++||= |+ | .+++++ .+++|+.+.
T Consensus 66 D~V~I~-tp~~~H~~~~~~al~aGkhVl~EK---Pla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 66 DLIVIP-TPNDTHFPLAKAALEAGKHVVVDK---PFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CEEEEc-CCcHHHHHHHHHHHHCCCeEEEeC---CCCCCHHHHHHHHHHHHHhCCEEE
Confidence 888876 333334333322 1 34566764 42 2 345443 356666553
No 266
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=87.56 E-value=1.9 Score=42.76 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|++|+.++..|.+.|..|. +.|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence 479999999999999999999999875 55653
No 267
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.47 E-value=3.1 Score=42.37 Aligned_cols=65 Identities=23% Similarity=0.267 Sum_probs=45.4
Q ss_pred chhHH-HHHHHHHHHHHHhC--------C-CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHH
Q 014463 197 AATGL-GVFFATEALLAEHG--------K-SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPA 266 (424)
Q Consensus 197 ~aTg~-Gv~~~~~~~~~~~g--------~-~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~ 266 (424)
+..|+ ++-.....+.+..| . .....+|+|.|.|-||.++|++..-.|++|. |-|. +++.
T Consensus 135 eVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~----------n~~r 203 (371)
T COG0686 135 EVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL----------NIDR 203 (371)
T ss_pred HHhhhHHHHHHHHHHHhccCCceeEecCCCCCCCccEEEECCccccchHHHHHhccCCeeE-EEec----------CHHH
Confidence 45566 55555444333322 2 2556789999999999999999999999987 8775 4566
Q ss_pred HHHHHH
Q 014463 267 LLKYKK 272 (424)
Q Consensus 267 L~~~~~ 272 (424)
|..+..
T Consensus 204 l~~ldd 209 (371)
T COG0686 204 LRQLDD 209 (371)
T ss_pred HhhhhH
Confidence 665544
No 268
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.43 E-value=1.5 Score=44.11 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=43.4
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHC----CCEEEEEEcCC
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEH----GGKVVAVSDIT 253 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~----GakVVaVsD~~ 253 (424)
.++|..||+.. +++.|.+++|++|+|+| ...||.-++.+|.++ ++.|. ++.++
T Consensus 141 ~PcTp~avi~l----L~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQEM----LVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 36898888765 45679999999999999 578999999999988 67776 76653
No 269
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=87.22 E-value=1.4 Score=43.52 Aligned_cols=57 Identities=21% Similarity=0.256 Sum_probs=38.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHH------CC---CEEEEEEcCCCceeC----CCCCCHHHHHHHHHhcC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHE------HG---GKVVAVSDITGAIKN----PNGIDVPALLKYKKSNK 275 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~------~G---akVVaVsD~~G~i~~----~~GlDi~~L~~~~~~~g 275 (424)
+...|++.|.|+||+++...+.. ++ .+||+|||+.+.+.. |.-++-+...++.++++
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~ 71 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG 71 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC
Confidence 34579999999999999876642 22 589999999876643 33343333334555544
No 270
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=87.21 E-value=7.9 Score=41.83 Aligned_cols=176 Identities=19% Similarity=0.264 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHhhhhhCCCCceecCCCcchhhhhhhhhhccccCCCC
Q 014463 113 SMSELERLTRVFTQKIHDLIGIHRDVPAPDMGTNSQTMAWILDEYSKFHGHSPAVVTGKPIVSIKRETEKQRNKNDLGGS 192 (424)
Q Consensus 113 s~~e~e~~~r~~~~~l~~~iG~~~di~apDvgt~~~~m~~i~d~~~~~~g~~~~~vtGkp~~~i~~~~~~~~~~~~~GGs 192 (424)
+..|-..|...|+.++..-.|+..-|-=.|+++.-.- -+.+.|+.. -++-.+-+
T Consensus 233 ~g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf--rlL~kYr~~-----~c~FNDDI------------------- 286 (582)
T KOG1257|consen 233 RGKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF--RLLEKYRNK-----YCMFNDDI------------------- 286 (582)
T ss_pred cccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH--HHHHHhccc-----cceecccc-------------------
Confidence 4445667899999999999999988888999975321 122344321 12222222
Q ss_pred CCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHH----HCCC-------EEEEEEcCCCceeCCC-
Q 014463 193 LGREAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFH----EHGG-------KVVAVSDITGAIKNPN- 260 (424)
Q Consensus 193 ~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~Ga-------kVVaVsD~~G~i~~~~- 260 (424)
+-||-=+..++-.+++..+.++++.+|.++|.|..|..+|.++. +.|. ||- ..|++|-|...-
T Consensus 287 ----QGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r~ 361 (582)
T KOG1257|consen 287 ----QGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGRK 361 (582)
T ss_pred ----cchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeecccc
Confidence 35666666677777888899999999999999999999998774 3452 444 677777665322
Q ss_pred -CCCHHHHHHHHHhcCCcccCCCCeeecCC-cccccccceeeecc-ccCccccccccc---ccce-EEEecCCCCC
Q 014463 261 -GIDVPALLKYKKSNKSLNDFQGGNAMDLN-DLLVHECDVLVPCA-LGGVLNKENAAD---VKAK-FIIEAANHPT 329 (424)
Q Consensus 261 -GlDi~~L~~~~~~~g~v~~~~~~~~i~~~-~ll~~~~DIliPaA-~~~~It~~na~~---i~ak-iIvEgAN~p~ 329 (424)
.++-... .+.++...+. +-. .+-.++..|||=|+ .++..|++-.+. ...| +|---.| |+
T Consensus 362 ~~l~~~~~-~fAk~~~~~~--------~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSN-PT 427 (582)
T KOG1257|consen 362 ASLTEEKK-PFAKDHEEIK--------DLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSN-PT 427 (582)
T ss_pred CCCChhhc-cccccChHHH--------HHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCC-Cc
Confidence 2221110 0001000000 111 13367899999877 588889887654 3444 4554444 54
No 271
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.10 E-value=0.79 Score=45.32 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|+|.|.+|+.+|..|.+.|.+|+ +.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 489999999999999999999999987 5564
No 272
>PLN02858 fructose-bisphosphate aldolase
Probab=87.07 E-value=2.1 Score=51.54 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccccccce
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLVHECDV 298 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~~~~DI 298 (424)
.++|.++|+|++|..+|+.|...|.+|+ +.|.+ .+++.+.... ++... ++.++ ..+||+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~--------Ga~~~~s~~e~-~~~aDv 383 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA--------GGLAGNSPAEV-AKDVDV 383 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc--------CCeecCCHHHH-HhcCCE
Confidence 3789999999999999999999999886 55643 2334333332 12112 22233 357999
Q ss_pred eeeccccC-----cccc--cccccc-cceEEEecCCC-C-CCHHHHHHHHh--CCceEecccc------ccccCc--chh
Q 014463 299 LVPCALGG-----VLNK--ENAADV-KAKFIIEAANH-P-TDPEADEILSK--KGVVILPDIY------ANSGGV--TVS 358 (424)
Q Consensus 299 liPaA~~~-----~It~--~na~~i-~akiIvEgAN~-p-~t~eA~~iL~~--rGI~viPD~l------aNaGGV--i~s 358 (424)
++-|--.. ++.. .-+..+ .-++|++-... | ++.+..+.+.+ +|+.++=--+ +..|-. +++
T Consensus 384 Vi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvg 463 (1378)
T PLN02858 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMAS 463 (1378)
T ss_pred EEEecCChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEE
Confidence 99775422 2211 112222 23566655543 4 34556677888 9998762222 222221 111
Q ss_pred ----hHHHhhh----cc-ccCC-----CHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 014463 359 ----YFEWVQN----IQ-GFMW-----EEEK----VNHELKRYMMSAFKDIKTMCQTHNCNLRMGAFT 408 (424)
Q Consensus 359 ----~~E~~qn----~~-~~~w-----~~e~----v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~ 408 (424)
.|+.++. +. ..++ -.-. +++-+...+...+.|.+..+++.|+++.+..-+
T Consensus 464 G~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~ev 531 (1378)
T PLN02858 464 GTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDI 531 (1378)
T ss_pred CCHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 2332221 11 1111 1112 333344444566778888999999998776544
No 273
>PRK05717 oxidoreductase; Validated
Probab=87.05 E-value=1.2 Score=42.35 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~-~~~~ 42 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVV-LADL 42 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEE-EEcC
Confidence 4588999999995 9999999999999999998 4554
No 274
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.03 E-value=2 Score=41.62 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=25.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCC---CEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG---GKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G---akVVaVsD~ 252 (424)
++|+|+|+|++|+.+++.|.+.| ..|. +.|.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r 36 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDP 36 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcC
Confidence 57999999999999999999888 4443 5555
No 275
>PLN02712 arogenate dehydrogenase
Probab=86.96 E-value=1.5 Score=48.99 Aligned_cols=32 Identities=41% Similarity=0.633 Sum_probs=27.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaV 249 (424)
-+.++|+|+|+|++|+.+++.|.+.|.+|+++
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 34478999999999999999999999998754
No 276
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=86.91 E-value=0.61 Score=47.91 Aligned_cols=112 Identities=22% Similarity=0.323 Sum_probs=60.1
Q ss_pred EEEEecChHHHHHHHHHHHCCC--EEEEEEcCCCceeCCCCCCHHHHHHHHHhc--CCcccCCCCeeec--C-Cccc--c
Q 014463 223 FAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITGAIKNPNGIDVPALLKYKKSN--KSLNDFQGGNAMD--L-NDLL--V 293 (424)
Q Consensus 223 vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~--g~v~~~~~~~~i~--~-~~ll--~ 293 (424)
|.|.|.|.||+.+++.|.+..- +|+ |+|.+ .+++.+..++. ..+.. ..++ + +++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~~----~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVEA----VQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEEE----EE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhccccceeE----EEEecCCHHHHHHHH
Confidence 6789999999999999988774 555 88874 56665555431 11111 1121 1 2222 3
Q ss_pred cccceeeeccccCccccccccc---ccceEEEecCCCCCCH---HHHHHHHhCCceEecccccccc
Q 014463 294 HECDVLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDP---EADEILSKKGVVILPDIYANSG 353 (424)
Q Consensus 294 ~~~DIliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~---eA~~iL~~rGI~viPD~laNaG 353 (424)
.+||++|-|+... .+..-++. .++.+|= -+. +++ +-++..+++|+.++++.=.+.|
T Consensus 66 ~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD-~~~--~~~~~~~l~~~a~~~g~~~l~~~G~~PG 127 (386)
T PF03435_consen 66 RGCDVVINCAGPF-FGEPVARACIEAGVHYVD-TSY--VTEEMLALDEEAKEAGVTALPGCGFDPG 127 (386)
T ss_dssp TTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE-SS---HHHHHHHCHHHHHHTTSEEE-S-BTTTB
T ss_pred hcCCEEEECCccc-hhHHHHHHHHHhCCCeec-cch--hHHHHHHHHHHHHhhCCEEEeCcccccc
Confidence 4889999998654 33332222 2555554 111 122 2245677899999888655554
No 277
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=86.90 E-value=1.6 Score=44.05 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=28.2
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~ 253 (424)
++++|+|+|.|+||+.+|..|...|. .++ +.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 56799999999999999999988775 444 77764
No 278
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.87 E-value=0.64 Score=46.20 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+|+|+|.|.+|+..|..|...|..|+ +-|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC
Confidence 389999999999999999999999988 66653
No 279
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=86.75 E-value=2.8 Score=36.06 Aligned_cols=100 Identities=20% Similarity=0.348 Sum_probs=54.6
Q ss_pred CeEEEEe----cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccccccc
Q 014463 221 MKFAIQG----FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHEC 296 (424)
Q Consensus 221 ~~vaIqG----fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~ 296 (424)
++|+|.| -++.|..+.+.|.++|.+|+.|.-..+.+. .+.-|+. + +|+ -.++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------------G~~~y~s---l--~e~-p~~i 56 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------------GIKCYPS---L--AEI-PEPI 56 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------------TEE-BSS---G--GGC-SST-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------------cEEeecc---c--cCC-CCCC
Confidence 5899999 599999999999999999998743332211 1112221 1 121 3566
Q ss_pred ceeeeccccC----cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEe-cc
Q 014463 297 DVLVPCALGG----VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVIL-PD 347 (424)
Q Consensus 297 DIliPaA~~~----~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~vi-PD 347 (424)
|+.+-|--.. .+.+--+..+++=++.-| ..++++.+.+++.|+.++ |.
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~vigp~ 109 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRVIGPN 109 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EEEESS
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEEEeCC
Confidence 7666654222 222222222344344444 457888999999999988 64
No 280
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=86.58 E-value=2.9 Score=36.32 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 192 SLGREAATGLGVFFATEALLAE-HGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 192 s~gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
-.|+...|.|....+.+.+.+. ....++...|-|.| .|.-...+.+-|.+.|.+|+.|.|.+..-+|
T Consensus 37 ~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPhN 112 (114)
T TIGR03628 37 KADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 112 (114)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3466778999998888888773 33557888999999 6788888889999999999999998755443
No 281
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.42 E-value=1.1 Score=46.74 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.2
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++++|.|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4688999999999999999999999999987 66764
No 282
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.37 E-value=2.2 Score=42.84 Aligned_cols=31 Identities=26% Similarity=0.218 Sum_probs=27.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|.|.|++|..++..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 369999999999999999999998886 5554
No 283
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.36 E-value=2 Score=43.89 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=54.7
Q ss_pred CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccccce
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHECDV 298 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~~DI 298 (424)
++|+|.|. |.+|+.+++.|.++ +.+++++++... .|-.+.+. ...+........-+.++....++|+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-----~g~~l~~~------~~~~~~~~~~~~~~~~~~~~~~vD~ 71 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-----AGKPLSDV------HPHLRGLVDLVLEPLDPEILAGADV 71 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-----cCcchHHh------CcccccccCceeecCCHHHhcCCCE
Confidence 68999997 99999999999875 789999988421 11111111 0101111011111112223357999
Q ss_pred eeeccccCcccccccccc-cc-eEEEecCCCC
Q 014463 299 LVPCALGGVLNKENAADV-KA-KFIIEAANHP 328 (424)
Q Consensus 299 liPaA~~~~It~~na~~i-~a-kiIvEgAN~p 328 (424)
++-| +++..+.+.+... ++ +.|++-++..
T Consensus 72 Vf~a-lP~~~~~~~v~~a~~aG~~VID~S~~f 102 (343)
T PRK00436 72 VFLA-LPHGVSMDLAPQLLEAGVKVIDLSADF 102 (343)
T ss_pred EEEC-CCcHHHHHHHHHHHhCCCEEEECCccc
Confidence 8886 4555666666554 22 4566666554
No 284
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.35 E-value=0.8 Score=46.50 Aligned_cols=47 Identities=28% Similarity=0.382 Sum_probs=36.2
Q ss_pred CchhHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEE
Q 014463 196 EAATGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAV 249 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaV 249 (424)
.-.||||.+.-+ + .--.|.+++|.|.|.||..++.-...+|| |||+|
T Consensus 176 GvsTG~GAa~~~---A----kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 176 GVSTGYGAAWNT---A----KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred cccccchhhhhh---c----ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 358999964321 1 11478999999999999999998888886 88876
No 285
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=86.26 E-value=0.75 Score=45.58 Aligned_cols=55 Identities=29% Similarity=0.297 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCc
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGA 255 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~ 255 (424)
++|-.|++.. ++++|+.+.|++++|.| .=+||.-+|-+|+..|+++-.+-|.+=.
T Consensus 147 PcTP~gv~ei----L~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt 202 (309)
T KOG0089|consen 147 PCTPLGVVEI----LERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT 202 (309)
T ss_pred CCchHHHHHH----HHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE
Confidence 6898888755 66789999999999999 6899999999999999988766665433
No 286
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=86.17 E-value=3.1 Score=42.95 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHHHHC-----CCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH-----GGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~-----GakVVaVsD~ 252 (424)
.||+|-|||-+|+.++|.+.+. ...||||-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 4899999999999999998764 5799999884
No 287
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=85.94 E-value=0.88 Score=46.15 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=30.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCCCc
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDITGA 255 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~G~ 255 (424)
++.++|+|+|.|+||+.+|..+...|. . +.+.|.+..
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence 345799999999999999999988885 7 558887543
No 288
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=85.80 E-value=2.9 Score=42.24 Aligned_cols=121 Identities=12% Similarity=0.104 Sum_probs=70.3
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHH
Q 014463 190 GGSLGREAATGLGVFFATEALLAEHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALL 268 (424)
Q Consensus 190 GGs~gr~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~ 268 (424)
=|..|-.+.|+|-- +.+.+ ..-+|.||.|.| .|.||+-+-++-.-.|++||+++-++- +..
T Consensus 131 lg~lGm~glTAy~G---f~ei~----~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E-----------Kv~ 192 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAG---FYEIC----SPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE-----------KVD 192 (343)
T ss_pred hhccCCchhHHHHH---HHHhc----CCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh-----------hhh
Confidence 35555555666543 33433 334779999999 599999999888889999999998853 111
Q ss_pred HHHHhcCCcc--cCCCCeeecC--CcccccccceeeeccccCcccccccc-cccceEEEecCCCC
Q 014463 269 KYKKSNKSLN--DFQGGNAMDL--NDLLVHECDVLVPCALGGVLNKENAA-DVKAKFIIEAANHP 328 (424)
Q Consensus 269 ~~~~~~g~v~--~~~~~~~i~~--~~ll~~~~DIliPaA~~~~It~~na~-~i~akiIvEgAN~p 328 (424)
-++.+.|.-. +|.....++. ...+..-.||++.--.++.++.--.. +.+.|+++.|+=.+
T Consensus 193 ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVGG~~lDavl~nM~~~gri~~CG~ISq 257 (343)
T KOG1196|consen 193 LLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVGGKMLDAVLLNMNLHGRIAVCGMISQ 257 (343)
T ss_pred hhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccCcHHHHHHHHhhhhccceEeeeeehh
Confidence 1222222111 1111000000 12345668999988655554432111 24888999987543
No 289
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.67 E-value=1.3 Score=44.34 Aligned_cols=34 Identities=29% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++|.|.|.|++|+.+|+.|.+.|..|. +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46799999999999999999999999987 66654
No 290
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=85.49 E-value=0.9 Score=44.50 Aligned_cols=36 Identities=25% Similarity=0.551 Sum_probs=30.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|+|.|.|-||+|+++.|.+-|..=+.+.|-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 677899999999999999999999996444466643
No 291
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.47 E-value=2.1 Score=44.68 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=27.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|.|.|+|++|+.+++.|.+.|..|+.| |.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi-d~ 31 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI-DT 31 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE-EC
Confidence 47999999999999999999999999844 54
No 292
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=85.38 E-value=3.6 Score=36.63 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=53.1
Q ss_pred CCCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEe--------cChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 193 LGREAATGLGVFFATEALLA-EHGKSISNMKFAIQG--------FGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 193 ~gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
.|+...|-|....+.+.+.+ .....++...|-|-| .|.-...+.+.|...|.+|+.|.|.+..-+|
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPhN 119 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPHD 119 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 45667899998888888776 334557888999999 6777788889999999999999998765444
No 293
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.35 E-value=0.87 Score=46.27 Aligned_cols=32 Identities=34% Similarity=0.264 Sum_probs=28.6
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 66653
No 294
>PLN02256 arogenate dehydrogenase
Probab=85.31 E-value=1.6 Score=43.90 Aligned_cols=33 Identities=42% Similarity=0.687 Sum_probs=29.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
.++++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 467899999999999999999999998888543
No 295
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=85.09 E-value=2.6 Score=41.99 Aligned_cols=130 Identities=17% Similarity=0.144 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcc
Q 014463 199 TGLGVFFATEALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLN 278 (424)
Q Consensus 199 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~ 278 (424)
=+.|...+++. .+.+++++++.|.|.|-+++.++-.|.+.|++-|.|.+.+ .++..++.+.-. .
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~~ka~~La~~~~--~ 173 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------TSRAQALADVIN--N 173 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------HHHHHHHHHHHh--h
Confidence 37788777753 3345788999999999999999999999998766688764 233333332200 0
Q ss_pred cCCCC--eeecC---CcccccccceeeeccccCcccc-c---ccccc-cceEEEecCCCCCCHHHHHHHHhCCceEe
Q 014463 279 DFQGG--NAMDL---NDLLVHECDVLVPCALGGVLNK-E---NAADV-KAKFIIEAANHPTDPEADEILSKKGVVIL 345 (424)
Q Consensus 279 ~~~~~--~~i~~---~~ll~~~~DIliPaA~~~~It~-~---na~~i-~akiIvEgAN~p~t~eA~~iL~~rGI~vi 345 (424)
.++.. ...+. ++.+ .++|++|=|.--+.-.. . ....+ ...+|.+-.-+|..-.--+.-+++|..++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~ 249 (283)
T PRK14027 174 AVGREAVVGVDARGIEDVI-AAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIETELLKAARALGCETL 249 (283)
T ss_pred ccCcceEEecCHhHHHHHH-hhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCCHHHHHHHHCCCEEE
Confidence 11110 01111 1122 36899996653211000 0 01112 34578888877753233345566776654
No 296
>PRK04148 hypothetical protein; Provisional
Probab=84.99 E-value=2 Score=38.32 Aligned_cols=34 Identities=32% Similarity=0.260 Sum_probs=29.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.++++|+++|.| -|..+|+.|.+.|..|+| .|.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence 467899999999 888899999999999995 5764
No 297
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=84.95 E-value=14 Score=36.03 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=58.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC----EEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGG----KVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 293 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga----kVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~ 293 (424)
+.++|+|+|+|++|+.+++-|.+.+. +++ ++|.+. +.+ +.... ++.++.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~-~~~~~~----------~~~--------------~~~~~~~~~~~~- 55 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIY-YHTPSK----------KNT--------------PFVYLQSNEELA- 55 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEE-EECCCh----------hcC--------------CeEEeCChHHHH-
Confidence 45789999999999999999988762 344 444321 000 00111 223333
Q ss_pred cccceeeeccccCccc---ccccccccceEEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 014463 294 HECDVLVPCALGGVLN---KENAADVKAKFIIEAANHPTDPEADEILSK--KGVVILPDIY 349 (424)
Q Consensus 294 ~~~DIliPaA~~~~It---~~na~~i~akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~l 349 (424)
.+||++|-|.-...+- .+..+.+..+.|+--+++-.....++++.. +-+.++|-..
T Consensus 56 ~~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 56 KTCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPNTP 116 (260)
T ss_pred HhCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCCch
Confidence 4789999885433321 122222334566767766554445555532 2345666544
No 298
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.85 E-value=1.4 Score=46.62 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 567899999999999999999999999876 78864
No 299
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=84.81 E-value=5 Score=42.97 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCC--CEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHG--GKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~G--akVVaVsD~~ 253 (424)
++|+|+|.|.||..+|-.|.++| .+|+++ |.+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gv-D~~ 35 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVV-DIS 35 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEE-ECC
Confidence 58999999999999999999884 789866 643
No 300
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.62 E-value=2.9 Score=40.93 Aligned_cols=31 Identities=35% Similarity=0.381 Sum_probs=25.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~ 252 (424)
++|+|+|.|++|+.+++.|.+.|. +|+ +.|.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcC
Confidence 379999999999999999999885 454 3454
No 301
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=84.40 E-value=1.4 Score=42.07 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.7
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998655577865
No 302
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.36 E-value=6.8 Score=38.88 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=28.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAV 249 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaV 249 (424)
..|.+|.|.|.|.||..+++++...|++ |+++
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~ 194 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGV 194 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3589999999999999999999999999 8854
No 303
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=84.29 E-value=1.2 Score=41.99 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++..+|.|.|.|.+|..+++.|...|.+-+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678899999999999999999999998766687764
No 304
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=84.14 E-value=1.9 Score=40.89 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 478999999995 9999999999999999988 5555
No 305
>PRK08628 short chain dehydrogenase; Provisional
Probab=83.64 E-value=1.8 Score=41.05 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 215 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 215 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
+.+++|+++.|.| .|.+|+.+++.|.++|++|+.+
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 4578999999999 5899999999999999998844
No 306
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=83.63 E-value=7 Score=40.95 Aligned_cols=121 Identities=24% Similarity=0.355 Sum_probs=71.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC-----------ceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG-----------AIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLN 289 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G-----------~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~ 289 (424)
++|+|.|.|=||...+-.|.+.|..||+| |.+. -||+|. +++|++.....|.+. .+.+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~v-Did~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl~-------fTtd 69 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCV-DIDESKVELLNKGISPIYEPG---LEELLKENLASGRLR-------FTTD 69 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEE-eCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcEE-------EEcC
Confidence 58999999999999999999999999965 6542 245543 344444333322221 1121
Q ss_pred -cccccccceeeeccccCcccccc----------ccc----c-cceEEEecCCCC--CCHHHHHHHHhCC------ceEe
Q 014463 290 -DLLVHECDVLVPCALGGVLNKEN----------AAD----V-KAKFIIEAANHP--TDPEADEILSKKG------VVIL 345 (424)
Q Consensus 290 -~ll~~~~DIliPaA~~~~It~~n----------a~~----i-~akiIvEgAN~p--~t~eA~~iL~~rG------I~vi 345 (424)
+---.++|+.+-|---.. .+++ ++. + +.++||-=.--| +|.+-.+.+.+.. |..-
T Consensus 70 ~~~a~~~adv~fIavgTP~-~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~N 148 (414)
T COG1004 70 YEEAVKDADVVFIAVGTPP-DEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASN 148 (414)
T ss_pred HHHHHhcCCEEEEEcCCCC-CCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecC
Confidence 111236777776642111 1122 111 1 336777766666 4677777777666 7777
Q ss_pred cccccccc
Q 014463 346 PDIYANSG 353 (424)
Q Consensus 346 PD~laNaG 353 (424)
|.||--.-
T Consensus 149 PEFLREG~ 156 (414)
T COG1004 149 PEFLREGS 156 (414)
T ss_pred hHHhcCcc
Confidence 87775543
No 307
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=83.50 E-value=7 Score=38.84 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=53.5
Q ss_pred CCCeEEEEecChHHH-HHHHHHHHCC--CEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccccc
Q 014463 219 SNMKFAIQGFGNVGS-WAAKFFHEHG--GKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLVHE 295 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~-~~a~~L~~~G--akVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~~~ 295 (424)
+-.||+|+|.|+.+. +.+..+.+.+ ..+++|+|.+ .+.+.+..++.+--..| -+-+++++.+
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~~~-----~~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAKAY-----TDLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCccc-----CCHHHHhcCC
Confidence 346899999997764 4667777655 5999999984 45556655554321122 2335677654
Q ss_pred -cceeeeccccCccccccccc---ccceEEEec
Q 014463 296 -CDVLVPCALGGVLNKENAAD---VKAKFIIEA 324 (424)
Q Consensus 296 -~DIliPaA~~~~It~~na~~---i~akiIvEg 324 (424)
+|+++=|. ++..+.+-+.. -..-++||=
T Consensus 67 ~iD~V~Iat-p~~~H~e~~~~AL~aGkhVl~EK 98 (342)
T COG0673 67 DIDAVYIAT-PNALHAELALAALEAGKHVLCEK 98 (342)
T ss_pred CCCEEEEcC-CChhhHHHHHHHHhcCCEEEEcC
Confidence 78777662 33333333322 144577775
No 308
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=83.48 E-value=1.3 Score=44.79 Aligned_cols=33 Identities=36% Similarity=0.431 Sum_probs=29.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
-++|+|+|.|.+|+..|..+...|..|+ +.|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC
Confidence 3689999999999999999988778988 77875
No 309
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=83.48 E-value=1.5 Score=41.33 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=31.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 677899999999999999999999998766688865
No 310
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.44 E-value=1.8 Score=46.24 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..+++|.|.|+|..|..++++|+..|++|+ ++|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 467899999999999999999999999988 68853
No 311
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.33 E-value=2 Score=35.97 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=44.8
Q ss_pred CeEEEEecChHHHHHHHHHHHC--CCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcccc-cccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEH--GGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLLV-HECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~--GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll~-~~~D 297 (424)
.||+|+|+|+.|+.-...+.+. +.++++|+|.+ .+...+..++. .+..| -+-+++++ .++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~----------~~~~~~~~~~~-~~~~~-----~~~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD----------PERAEAFAEKY-GIPVY-----TDLEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS----------HHHHHHHHHHT-TSEEE-----SSHHHHHHHTTES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC----------HHHHHHHHHHh-cccch-----hHHHHHHHhhcCC
Confidence 3799999999999998777654 68999999984 34444443332 12222 12356665 4688
Q ss_pred eeeecc
Q 014463 298 VLVPCA 303 (424)
Q Consensus 298 IliPaA 303 (424)
+.+-|.
T Consensus 65 ~V~I~t 70 (120)
T PF01408_consen 65 AVIIAT 70 (120)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 888774
No 312
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.29 E-value=2.1 Score=39.74 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++++++.|.|- |.+|+.+++.|.++|++|+.+ +.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~-~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALI-GR 39 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE-eC
Confidence 367899999985 999999999999999998744 44
No 313
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=83.22 E-value=2.1 Score=40.24 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999996 8999999999999999998553
No 314
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=83.16 E-value=10 Score=38.39 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=66.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCC-CCeee-cCCcccccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQ-GGNAM-DLNDLLVHE 295 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~-~~~~i-~~~~ll~~~ 295 (424)
.-++++|+|.|..|++-++.|.. ...+-|.|.|.+ .+...++.++-. .+. ..... +.++.. .+
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~----------~~~~~~~~~~~~---~~g~~v~~~~~~~eav-~~ 192 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRT----------PSTREKFALRAS---DYEVPVRAATDPREAV-EG 192 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCC----------HHHHHHHHHHHH---hhCCcEEEeCCHHHHh-cc
Confidence 35789999999999997777654 334455577663 334333333211 111 11122 234444 58
Q ss_pred cceeeeccccC--cccccccccccceEEEecCCCCCCHHHHHHHHhCCceEecccc
Q 014463 296 CDVLVPCALGG--VLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIY 349 (424)
Q Consensus 296 ~DIliPaA~~~--~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~l 349 (424)
+||++-|.-.. .+..+..+. .+-+.+=|++.|-..|.+..+-++.- ++-|..
T Consensus 193 aDiVitaT~s~~P~~~~~~l~~-g~~v~~vGs~~p~~~Eld~~~l~~a~-v~vD~~ 246 (325)
T TIGR02371 193 CDILVTTTPSRKPVVKADWVSE-GTHINAIGADAPGKQELDPEILKNAK-IFVDDL 246 (325)
T ss_pred CCEEEEecCCCCcEecHHHcCC-CCEEEecCCCCcccccCCHHHHhcCc-EEECCH
Confidence 99999876432 344443333 77788899999876666644444442 444643
No 315
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.14 E-value=3.3 Score=41.45 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 567899999999999999999999998877788864
No 316
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.08 E-value=1.9 Score=45.91 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.+++|.|.|+|..|..++++|++.|++|. ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 677899999999999999999999999765 78863
No 317
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.00 E-value=1.5 Score=44.37 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=29.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCC-CEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHG-GKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~G-akVVaVsD~~ 253 (424)
.+.++|+|+|.|+||+.++..|...| .. +.+.|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 46689999999999999999998888 56 4477875
No 318
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.96 E-value=1.9 Score=46.05 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=32.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 254 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 254 (424)
+++++|.|.|+|..|..+|++|++.|++|. ++|.+.
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence 567899999999999999999999999987 788753
No 319
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=82.80 E-value=2.5 Score=42.38 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=27.1
Q ss_pred CeEEEEecChHHHHHHH-HHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAK-FFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~ 253 (424)
.+|+|+|.|++|...+. ++...+.++++|+|.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d 35 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID 35 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 58999999999997754 4445689999999974
No 320
>PRK07060 short chain dehydrogenase; Provisional
Probab=82.78 E-value=2.4 Score=39.64 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r 41 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA-AAR 41 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeC
Confidence 3578899999997 89999999999999999884 454
No 321
>PRK09291 short chain dehydrogenase; Provisional
Probab=82.63 E-value=1.9 Score=40.73 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=27.0
Q ss_pred CCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 220 NMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 220 g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
++++.|.|. |.+|+.+++.|.+.|++|++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 468889885 9999999999999999998654
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=82.51 E-value=4 Score=41.05 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
..|.+|+|+|.|.||..+++++...|++|+++.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 468899999999999999999999999988543
No 323
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=82.50 E-value=2.3 Score=39.82 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
++++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~ 37 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVD 37 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 6788999999 69999999999999999998654
No 324
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.35 E-value=2.3 Score=44.61 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++++.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 568899999999999999999999999987 67764
No 325
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.34 E-value=2.1 Score=45.11 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=31.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++|.|.|+|.-|..+|++|.++|++|. ++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999876 78864
No 326
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=82.22 E-value=2.4 Score=42.43 Aligned_cols=33 Identities=36% Similarity=0.395 Sum_probs=27.5
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC--EEEEEEcCCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG--KVVAVSDITG 254 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga--kVVaVsD~~G 254 (424)
++|+|+|.|+||+.+|..|...|. .|+ +.|.+.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~~~ 35 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDINE 35 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCCc
Confidence 379999999999999999999884 555 778753
No 327
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.19 E-value=2.6 Score=42.47 Aligned_cols=37 Identities=27% Similarity=0.549 Sum_probs=32.5
Q ss_pred CCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463 215 GKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 215 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 251 (424)
|.+.++++|.|.| .|-+|+++++.|.++|.+|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 5568899999999 599999999999999999997654
No 328
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=82.16 E-value=2.2 Score=37.48 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=27.0
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998544477754
No 329
>PRK06849 hypothetical protein; Provisional
Probab=82.16 E-value=2 Score=44.19 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred CCCeEEEEecCh-HHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQGFGN-VGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGn-VG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.++|.|.|.+. +|..+++.|++.|.+|+++ |++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~-d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILA-DSL 37 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE-eCC
Confidence 458999999875 8999999999999999954 654
No 330
>PRK06138 short chain dehydrogenase; Provisional
Probab=82.14 E-value=2.4 Score=39.83 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=29.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 468899999995 9999999999999999998553
No 331
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=82.10 E-value=2.1 Score=42.36 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++.+++|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 35789999999999999999999999997767665
No 332
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.98 E-value=2.7 Score=36.85 Aligned_cols=30 Identities=33% Similarity=0.377 Sum_probs=26.0
Q ss_pred EEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 223 FAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 223 vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
|+|.|.|.+|...|-.|++.|..|.-++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999998855443
No 333
>PRK05309 30S ribosomal protein S11; Validated
Probab=81.56 E-value=5.8 Score=35.06 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 194 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
|....|-|....+.+.+.+ .....++...|.+-|+|.=-..+.+.|...|.+|+.|.|.+..-||
T Consensus 53 g~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~TpiphN 118 (128)
T PRK05309 53 GSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPHN 118 (128)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 3445777777777776665 2334567888999999986677778999999999999998765443
No 334
>PRK12742 oxidoreductase; Provisional
Probab=81.51 E-value=7.5 Score=36.17 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
.++++++.|.|. |.+|+.+++.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 367899999995 999999999999999998844
No 335
>PLN02206 UDP-glucuronate decarboxylase
Probab=81.49 E-value=2.4 Score=44.84 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=32.2
Q ss_pred hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 214 HGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 214 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
+|..-+++||.|.| .|-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 45566789999999 59999999999999999999764
No 336
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=81.44 E-value=4.7 Score=40.96 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
-.|.+|+|.|.|.||..+++++...|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36889999999999999999999999998866544
No 337
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=81.29 E-value=3.3 Score=38.48 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++++++.|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467889999995 999999999999999999756543
No 338
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=81.19 E-value=4 Score=34.76 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.0
Q ss_pred eEEEEec-ChHHHHHHHHHHH-CCCEEEEEEcCC
Q 014463 222 KFAIQGF-GNVGSWAAKFFHE-HGGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGf-GnVG~~~a~~L~~-~GakVVaVsD~~ 253 (424)
+++|+|. |.+|..+++.|.+ .+.+++++++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5889994 9999999999987 589999996653
No 339
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=81.08 E-value=1.8 Score=43.31 Aligned_cols=43 Identities=33% Similarity=0.456 Sum_probs=34.3
Q ss_pred HHHHhCC-----CCCCCeEEEEecChHHHHHHHHHHHCCC-EEEEEEcCC
Q 014463 210 LLAEHGK-----SISNMKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDIT 253 (424)
Q Consensus 210 ~~~~~g~-----~l~g~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~~ 253 (424)
+|+++|+ .+..+.|+|.|.|.||+.+|++|.+.|. |++ ..|.+
T Consensus 67 ALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLl-LfDYD 115 (422)
T KOG2336|consen 67 ALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLL-LFDYD 115 (422)
T ss_pred HHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEE-Eeecc
Confidence 4566674 3778899999999999999999999984 655 56654
No 340
>CHL00041 rps11 ribosomal protein S11
Probab=81.06 E-value=6.4 Score=34.18 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=48.9
Q ss_pred CCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 194 GREAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
|....|-|....+.+.+++. ....++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|.+..-||
T Consensus 49 g~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN 114 (116)
T CHL00041 49 GARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN 114 (116)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 34457777777777666652 234578889999999986667778999999999999998765444
No 341
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=81.02 E-value=6.3 Score=33.72 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=49.4
Q ss_pred CCCchhHHHHHHHHHHHHH-HhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 194 GREAATGLGVFFATEALLA-EHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
|....|-|....+.+.+++ .....++...|.+-|+|.=-..+.+.|...|.+|+-|.|.+..-||
T Consensus 36 g~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN 101 (108)
T TIGR03632 36 GSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN 101 (108)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 4456788877777776665 2334578888999999986677778999999999999998765553
No 342
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=80.87 E-value=2.5 Score=41.49 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=26.8
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|.|.|++|+.+|..|.+.|..|+. .+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~-~~r 31 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTL-VAR 31 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEC
Confidence 4799999999999999999999998874 444
No 343
>PRK06523 short chain dehydrogenase; Provisional
Probab=80.84 E-value=3 Score=39.63 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~-~r 41 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTT-AR 41 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE-eC
Confidence 4588999999994 899999999999999998854 44
No 344
>PRK06841 short chain dehydrogenase; Provisional
Probab=80.83 E-value=3 Score=39.39 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+++++.|.++|++|+. .+.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~-~~r 47 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVAL-LDR 47 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 47899999999 599999999999999999884 444
No 345
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=80.73 E-value=3.1 Score=39.06 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=29.9
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |.+|+.+++.|.++|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 46788999985 999999999999999999865543
No 346
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.72 E-value=3.1 Score=38.95 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+ +.+.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~-~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVV-VTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCC
Confidence 367889999995 9999999999999999987 44543
No 347
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.63 E-value=2.8 Score=41.92 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.|.| -+|+.+|+.|.+.|++|| +.|.
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~~ 42 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGTW 42 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEec
Confidence 46899999999996 899999999999999998 6653
No 348
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.62 E-value=2.5 Score=41.77 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|.|.|.+|+.+|..|...|..|+ +.|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 479999999999999999999999987 56653
No 349
>PRK07774 short chain dehydrogenase; Provisional
Probab=80.56 E-value=3.2 Score=39.05 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=29.8
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |-+|+++++.|.++|++|+. .+.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~-~~r 38 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVV-ADI 38 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 67899999995 99999999999999999984 444
No 350
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=80.54 E-value=2.3 Score=45.25 Aligned_cols=36 Identities=33% Similarity=0.464 Sum_probs=32.2
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 254 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 254 (424)
..+++|+|.|.|.-|..++++|++.|++|+ ++|.+-
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~ 40 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRP 40 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCC
Confidence 458999999999999999999999999988 788653
No 351
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=80.49 E-value=36 Score=35.89 Aligned_cols=36 Identities=25% Similarity=0.207 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEc
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD 251 (424)
..++|+||+|-|-......++++|.+.|++++.+.-
T Consensus 299 ~~l~gkrv~i~g~~~~~~~la~~L~elGm~v~~~~~ 334 (435)
T cd01974 299 QYLHGKKFALYGDPDFLIGLTSFLLELGMEPVHVLT 334 (435)
T ss_pred HhcCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEEe
Confidence 357899999999888888999999999999977653
No 352
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.45 E-value=2.7 Score=43.82 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=29.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+.++|.|.|+|..|..+|++|+++|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 44689999999999999999999999876 57754
No 353
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.37 E-value=7.2 Score=37.13 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=60.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCC---E-EEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeee-cCCcccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGG---K-VVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAM-DLNDLLV 293 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~Ga---k-VVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i-~~~~ll~ 293 (424)
+.+||+|+|.|++|+.+++.|.+.|. + ++ +.+.+ +.+.+.+..++.+ .... +.++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~-~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~- 64 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEII-VSNRS---------NVEKLDQLQARYN-------VSTTTDWKQHV- 64 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEE-EECCC---------CHHHHHHHHHHcC-------cEEeCChHHHH-
Confidence 45789999999999999999887762 3 43 33321 1234444433321 1111 223444
Q ss_pred cccceeeeccccCccccccccc----ccceEEEecCCCCCCHHHHHHHHh--CCceEecccc
Q 014463 294 HECDVLVPCALGGVLNKENAAD----VKAKFIIEAANHPTDPEADEILSK--KGVVILPDIY 349 (424)
Q Consensus 294 ~~~DIliPaA~~~~It~~na~~----i~akiIvEgAN~p~t~eA~~iL~~--rGI~viPD~l 349 (424)
.++|+++-|.-...+ .+.+.. ++-++|+--+.+-....-.+.+.. +=+++.|.+-
T Consensus 65 ~~~DiViiavp~~~~-~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a 125 (245)
T PRK07634 65 TSVDTIVLAMPPSAH-EELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTA 125 (245)
T ss_pred hcCCEEEEecCHHHH-HHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHH
Confidence 479999988644332 332222 233677777665433333333322 1234556543
No 354
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.34 E-value=3.1 Score=38.79 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
+++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999996 889999999999999999854
No 355
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.32 E-value=3.3 Score=39.95 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.|. |.+|+.+|+.|.++|++|+ +.|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeC
Confidence 3578999999996 7899999999999999988 5555
No 356
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=80.23 E-value=5.8 Score=41.56 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEE
Q 014463 216 KSISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 216 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++|++|.|.|- |.+|..+|+.|.++|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4689999999987 8899999999999999998553
No 357
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=80.14 E-value=6.1 Score=40.31 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+|+|.|.|.+|.-++..+...|+..|-++|.+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 399999999999999998888997666577864
No 358
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.13 E-value=3.3 Score=39.21 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=29.8
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |.+|+++++.|.++|++|+. .+.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~-~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAI-ADL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEE-EeC
Confidence 67899999996 99999999999999999884 444
No 359
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=80.09 E-value=1.7 Score=35.88 Aligned_cols=35 Identities=31% Similarity=0.323 Sum_probs=28.8
Q ss_pred CCeEEEEecChHHHHHHH-HHHHCCCEEEEEEcCCC
Q 014463 220 NMKFAIQGFGNVGSWAAK-FFHEHGGKVVAVSDITG 254 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~-~L~~~GakVVaVsD~~G 254 (424)
..+++|+|.|+.|+.++. .+...|.+++++.|.+.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 468999999999998874 34578999999999753
No 360
>PRK06949 short chain dehydrogenase; Provisional
Probab=80.00 E-value=3.5 Score=38.96 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
.+++++++.|.|. |.+|+++++.|.++|++|+++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3478999999995 999999999999999998854
No 361
>PLN02240 UDP-glucose 4-epimerase
Probab=79.92 E-value=3.2 Score=41.39 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++++|.|.|. |.+|+++++.|.+.|.+|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 9999999999999999998764
No 362
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=79.77 E-value=2.7 Score=44.33 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCCCeEEEEecChHHHH-HHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSW-AAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~-~a~~L~~~GakVVaVsD~~ 253 (424)
.++++|.|.|.|..|.. +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 6999999999987 78874
No 363
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=79.60 E-value=13 Score=33.85 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=32.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCeEE-EEecCh---HHHHHHHHHHHCCCEEEE
Q 014463 197 AATGLGVFFATEALLAEHGKSISNMKFA-IQGFGN---VGSWAAKFFHEHGGKVVA 248 (424)
Q Consensus 197 ~aTg~Gv~~~~~~~~~~~g~~l~g~~va-IqGfGn---VG~~~a~~L~~~GakVVa 248 (424)
+..|++++..++..+. ..+..+|+ +.|-|| -|..+|++|.++|.+|..
T Consensus 6 E~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 3567787776665542 44555664 588765 566788999999999774
No 364
>PRK07411 hypothetical protein; Validated
Probab=79.49 E-value=2.3 Score=44.26 Aligned_cols=36 Identities=17% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+..+|.|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 677899999999999999999999998666688854
No 365
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=79.40 E-value=3.1 Score=41.80 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=29.2
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++|.|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46889999995 9999999999999999998653
No 366
>PRK12829 short chain dehydrogenase; Provisional
Probab=79.32 E-value=3.3 Score=39.24 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=28.8
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
++++++.|.|. |.+|+.+++.|.++|++|+.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 78899999995 999999999999999998744
No 367
>PRK06125 short chain dehydrogenase; Provisional
Probab=79.18 E-value=3.8 Score=38.98 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=31.1
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~-~~r~ 40 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHL-VARD 40 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCC
Confidence 3578999999996 89999999999999999884 4543
No 368
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=79.17 E-value=4 Score=43.54 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCee-ecCCccccc--ccceeeeccccCc
Q 014463 231 VGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNA-MDLNDLLVH--ECDVLVPCALGGV 307 (424)
Q Consensus 231 VG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~-i~~~~ll~~--~~DIliPaA~~~~ 307 (424)
+|+++|+.|.++|.+|+ |.|.+ .++..++.+..+. + .+... -+.+++.+. .+|+++-|-..+.
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt----------~~~~~~l~~~~g~--~-~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~ 66 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRT----------PEKTDEFLAEEGK--G-KKIVPAYTLEEFVASLEKPRKILLMVKAGA 66 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCC----------HHHHHHHHHhhCC--C-CCeEeeCCHHHHHhhCCCCCEEEEECCCch
Confidence 58899999999999986 77764 3444444442111 0 01111 133454432 4888887755443
Q ss_pred ccccccc----cc-cceEEEecCCCCC--CHHHHHHHHhCCceEeccc------------cccccCcchhhHHHhhhc--
Q 014463 308 LNKENAA----DV-KAKFIIEAANHPT--DPEADEILSKKGVVILPDI------------YANSGGVTVSYFEWVQNI-- 366 (424)
Q Consensus 308 It~~na~----~i-~akiIvEgAN~p~--t~eA~~iL~~rGI~viPD~------------laNaGGVi~s~~E~~qn~-- 366 (424)
..++... .+ .-++|+++.|.-. |.+..+.|+++||.++=-- ..-.||=-. .|+.++.+
T Consensus 67 ~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~-a~~~~~piL~ 145 (459)
T PRK09287 67 PVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKE-AYELVAPILE 145 (459)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHH-HHHHHHHHHH
Confidence 3333322 22 3469999999643 4555578999999986211 112333211 23333221
Q ss_pred --c-----c---cCC--------CHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 014463 367 --Q-----G---FMW--------EEEKVNHELKRYMMSAFKDIKTMCQ-THNCNLRMGAFTL 409 (424)
Q Consensus 367 --~-----~---~~w--------~~e~v~~~l~~~m~~~~~~v~~~a~-~~~~~~r~aA~~~ 409 (424)
. + ..| --.-|+.-++..+.+.+.|.+..++ ..++++.+.+.++
T Consensus 146 ~ia~~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~ 207 (459)
T PRK09287 146 KIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVF 207 (459)
T ss_pred HHhhhhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 0 011 0134667777788888999999998 4799887766554
No 369
>PRK09186 flagellin modification protein A; Provisional
Probab=79.14 E-value=3.5 Score=38.93 Aligned_cols=32 Identities=34% Similarity=0.457 Sum_probs=28.6
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
++++++.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999995 899999999999999999854
No 370
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=79.00 E-value=3.6 Score=39.81 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=31.6
Q ss_pred CCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++++|.|+|.|.|+..=++.|.+.|++|+-||-.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 477999999999999999899999999999866543
No 371
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.83 E-value=3.8 Score=38.40 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+. .|.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~-~~r 37 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLAL-IDL 37 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 367899999997 99999999999999999874 454
No 372
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.79 E-value=8.3 Score=40.49 Aligned_cols=109 Identities=17% Similarity=0.256 Sum_probs=63.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCcc---cccccc
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDL---LVHECD 297 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~l---l~~~~D 297 (424)
..+.++|.|-+|+++|..+.++|.+|. |-+.+ .++..++.++++.-..+-+...+ +|+ |+.|=-
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~Va-vyNRt----------~~ktd~f~~~~~~~k~i~~~~si--eefV~~Le~PRk 70 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVA-VYNRT----------TEKTDEFLAERAKGKNIVPAYSI--EEFVASLEKPRK 70 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEE-EEeCC----------HHHHHHHHHhCccCCCccccCcH--HHHHHHhcCCce
Confidence 467899999999999999999999985 65543 34445555544322222222111 121 122222
Q ss_pred e--eeeccccCccccccccc----c-cceEEEecCCCCC--CHHHHHHHHhCCceEe
Q 014463 298 V--LVPCALGGVLNKENAAD----V-KAKFIIEAANHPT--DPEADEILSKKGVVIL 345 (424)
Q Consensus 298 I--liPaA~~~~It~~na~~----i-~akiIvEgAN~p~--t~eA~~iL~~rGI~vi 345 (424)
| +|-|. ..+ +..++. + +--+|++|-|.-. |..-.+.|.++||.++
T Consensus 71 I~lMVkAG--~~V-D~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~Fv 124 (473)
T COG0362 71 ILLMVKAG--TPV-DAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFV 124 (473)
T ss_pred EEEEEecC--CcH-HHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEE
Confidence 2 22221 111 111122 1 5678999999875 4445568999999877
No 373
>PRK08703 short chain dehydrogenase; Provisional
Probab=78.76 E-value=3.9 Score=38.37 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|.++++.|.++|++|+. .+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~-~~r 38 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVIL-VAR 38 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEE-EeC
Confidence 478899999995 99999999999999999884 454
No 374
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.50 E-value=3.8 Score=39.33 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=30.7
Q ss_pred CCCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++|+++.|.|.+ .+|..+|+.|.+.|++|+ +++.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 4789999999975 699999999999999987 55653
No 375
>PRK05867 short chain dehydrogenase; Provisional
Probab=78.47 E-value=4.1 Score=38.67 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+ +++.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~-~~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVA-IAAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEcC
Confidence 478999999996 8999999999999999988 4454
No 376
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.47 E-value=4 Score=38.33 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=29.4
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |.+|+++++.|.++|++|+.+.+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999995 899999999999999998854443
No 377
>PLN02427 UDP-apiose/xylose synthase
Probab=78.44 E-value=3.6 Score=42.04 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=31.7
Q ss_pred hCCCCCCCeEEEEe-cChHHHHHHHHHHHC-CCEEEEEE
Q 014463 214 HGKSISNMKFAIQG-FGNVGSWAAKFFHEH-GGKVVAVS 250 (424)
Q Consensus 214 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~-GakVVaVs 250 (424)
-|+.++.+||.|.| .|-+|+++++.|.++ |.+|+++.
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 35668889999999 499999999999988 58999774
No 378
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=78.42 E-value=10 Score=38.45 Aligned_cols=36 Identities=19% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+|++|+|.|.|++|..+|..|.+.|.+-|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 458999999999999999999988998733466544
No 379
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.35 E-value=3.5 Score=40.07 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=29.9
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|.+ .+|+.+|+.|.+.|++|+ +++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 688999999986 699999999999999998 5554
No 380
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=78.33 E-value=4 Score=39.00 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++++++.|.|. +.+|+++|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3588999999995 899999999999999998855443
No 381
>PRK09072 short chain dehydrogenase; Provisional
Probab=78.30 E-value=4.2 Score=38.80 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+.+++.|.++|++|+.+ +.
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~-~r 37 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLV-GR 37 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-EC
Confidence 46788999999 5999999999999999998854 44
No 382
>PRK09620 hypothetical protein; Provisional
Probab=78.29 E-value=4.1 Score=39.40 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.9
Q ss_pred CCCCeEEEEec-----------------ChHHHHHHHHHHHCCCEEEEEEc
Q 014463 218 ISNMKFAIQGF-----------------GNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 218 l~g~~vaIqGf-----------------GnVG~~~a~~L~~~GakVVaVsD 251 (424)
++|++|.|.+. |-+|+++|+.|.++|++|+.|..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888753 88999999999999999997754
No 383
>PRK07236 hypothetical protein; Provisional
Probab=78.27 E-value=4 Score=41.71 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=33.8
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNP 259 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~ 259 (424)
++..+|+|+|.|.+|..+|..|.+.|.+|+ |-|......++
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 456799999999999999999999999987 88865433433
No 384
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=78.25 E-value=3.3 Score=41.24 Aligned_cols=31 Identities=39% Similarity=0.568 Sum_probs=27.4
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|+|.|++|+.+|..|...|.+|+ +.|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 479999999999999999999999887 4565
No 385
>PRK05876 short chain dehydrogenase; Provisional
Probab=78.18 E-value=4 Score=39.70 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=30.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++++.|.| .|.+|+++++.|.++|++|+ ++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVV-LGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 6889999998 58999999999999999987 55653
No 386
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=78.07 E-value=3.5 Score=41.56 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEc
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD 251 (424)
..++.++|.|.|. |-+|+++++.|.++|.+|+++.-
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3477899999995 99999999999999999997753
No 387
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=77.96 E-value=3.7 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.1
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++++.|.| .|.+|.++++.|.+.|++|+. .|.+
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~-~~r~ 45 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVIL-LGRT 45 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEE-EeCC
Confidence 6889999998 599999999999999999984 4543
No 388
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.82 E-value=3.2 Score=40.76 Aligned_cols=32 Identities=31% Similarity=0.428 Sum_probs=28.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeCC
Confidence 479999999999999999999999888 55654
No 389
>PRK06057 short chain dehydrogenase; Provisional
Probab=77.69 E-value=4.2 Score=38.65 Aligned_cols=32 Identities=22% Similarity=0.250 Sum_probs=29.2
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
++|++|.|.|. |.+|.++++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 78999999996 999999999999999999844
No 390
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.67 E-value=4.2 Score=38.18 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 251 (424)
++++++.|.| .|.+|+++++.|.++|++|+.+.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5778999998 699999999999999999984433
No 391
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.67 E-value=3.9 Score=39.10 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +++.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi-~~~r 41 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVI-YTYQ 41 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEE-EecC
Confidence 789999999975 799999999999999998 4444
No 392
>PRK06172 short chain dehydrogenase; Provisional
Probab=77.65 E-value=4.1 Score=38.53 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~-~~r~ 40 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVV-ADRD 40 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EeCC
Confidence 478899999994 89999999999999999884 4553
No 393
>PRK06194 hypothetical protein; Provisional
Probab=77.60 E-value=4.2 Score=39.29 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~-~~~r 38 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLV-LADV 38 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEE-EEeC
Confidence 367889999985 8999999999999999988 4454
No 394
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=77.57 E-value=3.4 Score=44.89 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=30.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
..|++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999977 6774
No 395
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=77.46 E-value=4.2 Score=38.25 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 5678999999 5999999999999999999854
No 396
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=77.44 E-value=4.3 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=30.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+.+++.|.++|++|+ +.|.
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~-~~~~ 41 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVV-NADI 41 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 47889999999 59999999999999999998 4454
No 397
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.44 E-value=4.1 Score=39.53 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=29.7
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+++.|.|.+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 788999999986 699999999999999987 5554
No 398
>PRK07831 short chain dehydrogenase; Provisional
Probab=77.39 E-value=4 Score=38.91 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCCCeEEEEec-C-hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-G-NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-G-nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. | .+|+.+++.|.++|++|+ +.|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 67899999996 6 699999999999999987 5554
No 399
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.35 E-value=4.6 Score=37.82 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
.++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 36789999999 5999999999999999999865
No 400
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=77.30 E-value=4.1 Score=38.75 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.6
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
+++|+++.|.|. |.+|..+++.|.++|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999865
No 401
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=77.29 E-value=4.6 Score=38.25 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=30.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+.+++.|.++|++|+ +.+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcC
Confidence 47889999998 58999999999999999998 5554
No 402
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.26 E-value=3.8 Score=41.98 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=29.0
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
++++|.|.|. |-||+++++.|.++|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5689999996 9999999999999999999775
No 403
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=77.24 E-value=4.7 Score=38.20 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+++++++.|.|. |.+|+.+++.|.++|++|+. .+.+
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~-~~r~ 44 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLV-NGRN 44 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEE-EeCC
Confidence 3478999999995 99999999999999999984 4553
No 404
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.12 E-value=4.6 Score=40.02 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=31.2
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.| .|.+|+.+++.|.++|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 458999999998 48999999999999999988 5564
No 405
>PRK08655 prephenate dehydrogenase; Provisional
Probab=77.03 E-value=7.2 Score=41.23 Aligned_cols=31 Identities=42% Similarity=0.797 Sum_probs=26.6
Q ss_pred CeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 221 MKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+|+| +|.+|+.+++.|.+.|..|+ +.|.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r 32 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTGR 32 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 4799997 89999999999999999877 4554
No 406
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=77.02 E-value=7.9 Score=39.64 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.0
Q ss_pred CeEEEEec-ChHHHHHHHHHHHC-CCEEEEEEcCC
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHEH-GGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~~-GakVVaVsD~~ 253 (424)
++|+|.|. |-||+.++++|.++ ..+++++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccc
Confidence 47999997 99999999999876 78898876654
No 407
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=77.01 E-value=7.9 Score=38.64 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=63.6
Q ss_pred eEEEEec-ChHHHHHHHHHHHCCCEEEEE-EcCCCceeCCCCCCHHHHHHHHHhcCCcccC-CCCeeecCCcccccccc-
Q 014463 222 KFAIQGF-GNVGSWAAKFFHEHGGKVVAV-SDITGAIKNPNGIDVPALLKYKKSNKSLNDF-QGGNAMDLNDLLVHECD- 297 (424)
Q Consensus 222 ~vaIqGf-GnVG~~~a~~L~~~GakVVaV-sD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~-~~~~~i~~~~ll~~~~D- 297 (424)
+|+|-|+ |++|+.+++.+.+.+..+|+. .|..+ .|-|+.++... .+.-. |....-+-+++++..+|
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~-----~~~~~~~~~g~-----~v~v~~~~~~~~~l~~~~~~~~d~ 71 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEE-----EAENEAEVAGK-----EILLHGPSEREARIGEVFAKYPEL 71 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccc-----cccchhhhccc-----ceeeeccccccccHHHHHhhcCCE
Confidence 7899996 999999999998899999986 44432 34454444221 11100 11111112345555588
Q ss_pred eeeeccccCccccccccc---ccceEEEecCCCCCCHHHHHHHH---hCCceEecccc
Q 014463 298 VLVPCALGGVLNKENAAD---VKAKFIIEAANHPTDPEADEILS---KKGVVILPDIY 349 (424)
Q Consensus 298 IliPaA~~~~It~~na~~---i~akiIvEgAN~p~t~eA~~iL~---~rGI~viPD~l 349 (424)
|+|.-..+..+. +|+.. -+..+|++ .=+ .|++-.+.|. +-++++.|-+.
T Consensus 72 VvIDFT~P~~~~-~n~~~~~~~gv~~ViG-TTG-~~~~~~~~l~~~~~i~~l~apNfS 126 (275)
T TIGR02130 72 ICIDYTHPSAVN-DNAAFYGKHGIPFVMG-TTG-GDREALAKLVADAKHPAVIAPNMA 126 (275)
T ss_pred EEEECCChHHHH-HHHHHHHHCCCCEEEc-CCC-CCHHHHHHHHHhcCCCEEEECccc
Confidence 888776655443 23332 35566663 333 3444333333 24566777664
No 408
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.98 E-value=4.2 Score=38.39 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=29.7
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |.+|+++++.|.++|++|+ +.+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 57889999995 8999999999999999988 5555
No 409
>PRK12746 short chain dehydrogenase; Provisional
Probab=76.95 E-value=5 Score=37.88 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=28.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 36788999999 5999999999999999998743
No 410
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.95 E-value=4.4 Score=38.99 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++|++++|.|. +.+|..+|+.|.++|++|+ +++.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 478999999997 5899999999999999988 4554
No 411
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=76.90 E-value=9 Score=40.18 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=57.8
Q ss_pred CCCCeEEEEec----------ChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeec
Q 014463 218 ISNMKFAIQGF----------GNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMD 287 (424)
Q Consensus 218 l~g~~vaIqGf----------GnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~ 287 (424)
++|++|+|-|. -.-...+++.|.++|++|+ +|||.... +.+ ..|++....+
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~--------aYDP~a~~-----~~~------~~~~~~~~~~ 368 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVI--------AYDPVAME-----NAF------RNFPDVELES 368 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEE--------EECchhhH-----HHH------hcCCCceEeC
Confidence 99999999995 4567788899999999998 36766432 111 1223233333
Q ss_pred CCcccccccceeeeccccCcccccccc--cccceEEEecCCC
Q 014463 288 LNDLLVHECDVLVPCALGGVLNKENAA--DVKAKFIIEAANH 327 (424)
Q Consensus 288 ~~~ll~~~~DIliPaA~~~~It~~na~--~i~akiIvEgAN~ 327 (424)
..+-.-..+|+++-+---..+.+-+-. .++.++|+.|-|.
T Consensus 369 ~~~~~~~~aDaivi~tew~ef~~~d~~~~~m~~~~v~DgRni 410 (414)
T COG1004 369 DAEEALKGADAIVINTEWDEFRDLDFEKLLMKTPVVIDGRNI 410 (414)
T ss_pred CHHHHHhhCCEEEEeccHHHHhccChhhhhccCCEEEecccc
Confidence 333334578999888543433222222 4677899998885
No 412
>PRK05875 short chain dehydrogenase; Provisional
Probab=76.79 E-value=4.9 Score=38.58 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=29.9
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999995 8999999999999999988553
No 413
>PRK06398 aldose dehydrogenase; Validated
Probab=76.72 E-value=4.7 Score=38.60 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=29.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
+++|+++.|.|. |.+|..+++.|.+.|++|+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 478999999995 899999999999999999854
No 414
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=76.51 E-value=7.8 Score=39.22 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=33.9
Q ss_pred HHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 211 LAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 211 ~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+...+....|.+|.|.|.|.+|..+++++...|++++.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457889999999999999999999999998876554
No 415
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=76.50 E-value=3.3 Score=41.40 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
.-++|+|.|.|.+|..+|..|++.|..|+-++
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~ 35 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLL 35 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence 44789999999999999999999999887554
No 416
>PRK06196 oxidoreductase; Provisional
Probab=76.49 E-value=4.9 Score=39.81 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
..+++++++.|.|. |.+|+++++.|.+.|++|+.+
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 35578999999995 899999999999999999854
No 417
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=76.44 E-value=5.7 Score=37.87 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=30.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEc
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSD 251 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD 251 (424)
+++++++.|.| -|.+|+.+++.|.++|++|+.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 47899999999 489999999999999999985433
No 418
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=76.34 E-value=3.8 Score=40.89 Aligned_cols=32 Identities=31% Similarity=0.291 Sum_probs=28.1
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..|.++|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 379999999999999999999999988 55654
No 419
>PRK08265 short chain dehydrogenase; Provisional
Probab=76.33 E-value=5.2 Score=38.33 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.+.|++|+ +.|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 468899999995 9999999999999999988 5555
No 420
>PRK07806 short chain dehydrogenase; Provisional
Probab=76.31 E-value=5.6 Score=37.39 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.8
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++++.|.|. |.+|+++++.|.++|++|++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~ 37 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNY 37 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 367899999995 9999999999999999998654
No 421
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.27 E-value=5.4 Score=37.80 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.+.|++|+. .+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~-~~r 38 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVV-CGR 38 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 578999999995 89999999999999999884 454
No 422
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=76.09 E-value=9.8 Score=32.58 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=47.7
Q ss_pred CchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 196 EAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 196 ~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
...|-+....+.+.+++. ....++...|.|-|+|.--..+.+.|...|.+|+.|.|.+..-||
T Consensus 38 rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~iphn 101 (110)
T PF00411_consen 38 RKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIPHN 101 (110)
T ss_dssp CGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT--SS
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 356777777777766663 334567788889999998889999999999999999997755443
No 423
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=76.07 E-value=4 Score=40.06 Aligned_cols=32 Identities=25% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
++++|.|.| .|-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 59999999999999999998654
No 424
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=76.06 E-value=4.7 Score=38.50 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=31.0
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
..++++|.|.|. |.+|+.+++.|.+.|++|++++..
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 367789999994 999999999999999999877543
No 425
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.01 E-value=5.2 Score=37.11 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=29.2
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++.++++.|.| .|.+|+.+++.|.++|++|+ +.+.
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~-~~~r 37 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVV-IYDS 37 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 35678999999 59999999999999999976 4444
No 426
>PRK08291 ectoine utilization protein EutC; Validated
Probab=75.98 E-value=29 Score=35.15 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=66.9
Q ss_pred CCCeEEEEecChHHHHHHHHHHH-CCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecC-Cccccccc
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHE-HGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDL-NDLLVHEC 296 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~-~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~-~~ll~~~~ 296 (424)
..++++|.|.|..|+..+..|.. .+.+-|.|.+.+ .++..++.++...-.+.+ ....++ ++.+ .++
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~----------~~~a~~l~~~~~~~~g~~-v~~~~d~~~al-~~a 198 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD----------AAKAEAYAADLRAELGIP-VTVARDVHEAV-AGA 198 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC----------HHHHHHHHHHHhhccCce-EEEeCCHHHHH-ccC
Confidence 45799999999999998888874 566667687763 344444433211000110 011111 2333 478
Q ss_pred ceeeeccc--cCcccccccccccceEEEecCCCCCCHHHHHHHHhCCceEeccccc
Q 014463 297 DVLVPCAL--GGVLNKENAADVKAKFIIEAANHPTDPEADEILSKKGVVILPDIYA 350 (424)
Q Consensus 297 DIliPaA~--~~~It~~na~~i~akiIvEgAN~p~t~eA~~iL~~rGI~viPD~la 350 (424)
||++-|.- +-.|..+.++. .+.+.+=|++.|.-.|.+.-+-++.-.|+=|.+.
T Consensus 199 DiVi~aT~s~~p~i~~~~l~~-g~~v~~vg~d~~~~rEld~~~l~~a~~v~vD~~~ 253 (330)
T PRK08291 199 DIIVTTTPSEEPILKAEWLHP-GLHVTAMGSDAEHKNEIAPAVFAAADLYVCDRLS 253 (330)
T ss_pred CEEEEeeCCCCcEecHHHcCC-CceEEeeCCCCCCcccCCHHHHhhCCEEEeCCHH
Confidence 99987753 23344443332 3456777788887666664444444334445543
No 427
>PLN02214 cinnamoyl-CoA reductase
Probab=75.95 E-value=4.6 Score=40.71 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++|.|.|. |-+|+++++.|.++|.+|++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 57889999996 9999999999999999998764
No 428
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.85 E-value=5.1 Score=38.04 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| -|.+|+++++.|.++|++|+. .+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~-~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVL-SAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeC
Confidence 47889999999 499999999999999999884 454
No 429
>PLN02253 xanthoxin dehydrogenase
Probab=75.79 E-value=5.2 Score=38.54 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++++++.|.|. |.+|+++++.|.++|++|+. .|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~-~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCI-VDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeC
Confidence 478899999985 89999999999999999984 454
No 430
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=75.71 E-value=3.5 Score=40.34 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=22.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHCC
Q 014463 219 SNMKFAIQGFGNVGSWAAKFFHEHG 243 (424)
Q Consensus 219 ~g~~vaIqGfGnVG~~~a~~L~~~G 243 (424)
+..+|.|.|.|.+|+.+++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5679999999999999999999875
No 431
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=75.63 E-value=5.4 Score=38.10 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=29.8
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+. .+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~-~~r 37 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAV-LDK 37 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEE-EeC
Confidence 367899999985 88999999999999999984 454
No 432
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=75.60 E-value=5.2 Score=37.97 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=29.4
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.| .|.+|.++++.|.++|++|+. .|.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~-~~r 38 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVI-ADI 38 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EcC
Confidence 6788999998 499999999999999999984 454
No 433
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=75.57 E-value=4.8 Score=36.10 Aligned_cols=31 Identities=29% Similarity=0.305 Sum_probs=27.4
Q ss_pred EEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 223 FAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 223 vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
|+|.|. |.+|+.+++.|.+.|.+|++++-+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 678885 9999999999999999999988653
No 434
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.54 E-value=5.4 Score=38.01 Aligned_cols=36 Identities=14% Similarity=0.220 Sum_probs=31.0
Q ss_pred CCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++|+++.|.|. |.+|+.+++.|.+.|++|+ +.+.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~-~~~r 40 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVA-ICGR 40 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 4588999999996 8899999999999999988 4454
No 435
>PRK08264 short chain dehydrogenase; Validated
Probab=75.54 E-value=5.2 Score=37.33 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=28.4
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCC-EEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGG-KVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~Ga-kVVaV 249 (424)
+++++++.|.| .|.+|+++++.|.++|+ +|+.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEE
Confidence 36788999999 59999999999999999 87744
No 436
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.46 E-value=3.7 Score=43.59 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=29.3
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
-++++|.|.|+|.-|..++++|+ .|++|+ |+|.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~-v~D~ 36 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKYDVI-VYDD 36 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCCEEE-EECC
Confidence 45789999999999999999999 499987 8884
No 437
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.40 E-value=5.4 Score=38.34 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=30.5
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.+.|++|+.+ |.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~-~r 41 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVA-SR 41 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 478899999996 899999999999999998855 44
No 438
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.39 E-value=4.2 Score=45.07 Aligned_cols=35 Identities=31% Similarity=0.338 Sum_probs=31.0
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..+++|+|+|.|..|..+|..|.+.|++|+ |.|..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecC
Confidence 368999999999999999999999999977 77753
No 439
>PRK09135 pteridine reductase; Provisional
Probab=75.36 E-value=5.1 Score=37.38 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=28.8
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++++.|.| .|.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~ 37 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHY 37 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEc
Confidence 4568899999 59999999999999999998664
No 440
>PRK10206 putative oxidoreductase; Provisional
Probab=75.31 E-value=5.4 Score=40.63 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=24.1
Q ss_pred CeEEEEecChHHH-HHHHHH-HH-CCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGS-WAAKFF-HE-HGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~-~~a~~L-~~-~GakVVaVsD~~ 253 (424)
.||+|+|+|..+. .-+..+ .. .+..|++|+|.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~ 37 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH 37 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC
Confidence 4899999999765 233444 32 479999999974
No 441
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.28 E-value=5.8 Score=37.05 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
.++++++.|.| .|.+|+++++.|.++|++++.+.
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 36788999998 49999999999999999988544
No 442
>PRK06197 short chain dehydrogenase; Provisional
Probab=75.16 E-value=4.7 Score=39.67 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~ 47 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAV 47 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 478999999995 9999999999999999998554
No 443
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=75.09 E-value=5.5 Score=38.10 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=30.5
Q ss_pred CCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 216 KSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 216 ~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.+++++++.|.| .|.+|..+++.|.++|++|+ +.+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv-~~~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIV-FNDI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEE-EEeC
Confidence 357889999988 48999999999999999988 4454
No 444
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=75.08 E-value=4.6 Score=40.28 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
++++++|.|.|. |-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 467899999995 9999999999999999999764
No 445
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=75.01 E-value=9.2 Score=39.97 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=27.0
Q ss_pred CeEEEEe-cChHHHHHHHHHHHC--CCEEEEEE-cC
Q 014463 221 MKFAIQG-FGNVGSWAAKFFHEH--GGKVVAVS-DI 252 (424)
Q Consensus 221 ~~vaIqG-fGnVG~~~a~~L~~~--GakVVaVs-D~ 252 (424)
++|+|.| -|++|....+.+.+. ..+|++++ ++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~ 37 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK 37 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC
Confidence 5899999 799999999888654 68999998 54
No 446
>PRK07577 short chain dehydrogenase; Provisional
Probab=74.99 E-value=5.5 Score=37.01 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=28.0
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++.|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5678999985 9999999999999999998654
No 447
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=74.89 E-value=5.7 Score=37.79 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=30.2
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|..+++.|.++|++|+ +.+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~-~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADII-ITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 478999999995 9999999999999999988 4444
No 448
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.86 E-value=5.3 Score=37.44 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.2
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
++++++.|.| .|.+|+.+++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 4788999999 4999999999999999998854
No 449
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=74.82 E-value=11 Score=38.95 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=29.2
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..++|+|+| .|.+|+.+|+.|.+.|..|. +.|.+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCC
Confidence 457999999 99999999999999998877 56653
No 450
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=74.77 E-value=5.6 Score=39.31 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=30.0
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.|++|.|.| .|-+|+++++.|.+.|.+|+++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999 5999999999999999999877653
No 451
>PRK05866 short chain dehydrogenase; Provisional
Probab=74.77 E-value=6 Score=38.96 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 215 GKSISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 215 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+..++++++.|.|. |.+|+++++.|.+.|++|+. .+.
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~-~~R 72 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVA-VAR 72 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE-EEC
Confidence 34578899999995 99999999999999999984 444
No 452
>PRK07035 short chain dehydrogenase; Provisional
Probab=74.72 E-value=5.8 Score=37.43 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=30.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|.++++.|.+.|++|+.+ +.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~-~r 40 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS-SR 40 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE-eC
Confidence 47889999988 5999999999999999999855 44
No 453
>PRK05872 short chain dehydrogenase; Provisional
Probab=74.66 E-value=5.9 Score=38.92 Aligned_cols=35 Identities=23% Similarity=0.446 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++|+++.|.|. |.+|..+++.|.++|++|+ +.+.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLA-LVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 478999999995 9999999999999999987 4554
No 454
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.62 E-value=4.3 Score=43.79 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=30.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+.++|+|+|.|--|..+|+.|++.|.+|+ |-+.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEAR 47 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEAR 47 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEecc
Confidence 456799999999999999999999999977 77754
No 455
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.61 E-value=4.6 Score=42.39 Aligned_cols=31 Identities=35% Similarity=0.474 Sum_probs=28.3
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+|.|.|.|..|..+|++|.++|++|. ++|.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 68999999999999999999999876 78864
No 456
>PRK07814 short chain dehydrogenase; Provisional
Probab=74.58 E-value=5.6 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.4
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++++.|.|. |.+|.++++.|.++|++|+. .+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~-~~r~ 43 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLI-AART 43 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE-EeCC
Confidence 378899999995 78999999999999999984 4553
No 457
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=74.49 E-value=9.4 Score=39.17 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=30.6
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
..|.+|+|.|.|.||..++++....|++|+++.+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36889999999999999999999999998866543
No 458
>PRK08226 short chain dehydrogenase; Provisional
Probab=74.45 E-value=5.7 Score=37.74 Aligned_cols=34 Identities=26% Similarity=0.558 Sum_probs=29.5
Q ss_pred CCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.| .|.+|+++++.|.++|++|+.+ +.
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~-~r 38 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILL-DI 38 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe-cC
Confidence 6789999998 5999999999999999998844 44
No 459
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.41 E-value=5.9 Score=40.48 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=38.1
Q ss_pred HHHHHhCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 209 ALLAEHGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 209 ~~~~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
..|++.|.. .|+++.|.|.|-+|.-+.++-...|++|++|+-++
T Consensus 172 spLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 346677887 89999999999999999999999999999887764
No 460
>PRK06114 short chain dehydrogenase; Provisional
Probab=74.36 E-value=6.1 Score=37.56 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+++++++.|.| .|.+|+.+++.|.+.|++|+ +.|.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~-~~~r~ 41 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVA-LFDLR 41 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999998 58999999999999999998 55653
No 461
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=74.28 E-value=4.4 Score=39.81 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEE
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaV 249 (424)
++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999887744
No 462
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.21 E-value=6.5 Score=36.42 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=29.6
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++.+++.|.|. |.+|+.+++.|.++|++|+.++..
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45679999984 999999999999999998765554
No 463
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.19 E-value=5.9 Score=36.91 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.9
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+++++.|.++|++|+. .+.
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~-~~r 37 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYG-VDK 37 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 46789999998 599999999999999999884 454
No 464
>PRK06500 short chain dehydrogenase; Provisional
Probab=74.19 E-value=5.4 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++++++.|.|. |.+|+++++.|.++|++|+.+ +.
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~-~r 38 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT-GR 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe-cC
Confidence 67889999995 999999999999999998854 44
No 465
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=74.13 E-value=2.6 Score=47.44 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=29.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..+...|..|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 77764
No 466
>PRK07326 short chain dehydrogenase; Provisional
Probab=74.13 E-value=5.7 Score=37.00 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=28.9
Q ss_pred CCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+.++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~-~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT-AR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe-eC
Confidence 46789999984 999999999999999998854 44
No 467
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.04 E-value=6.7 Score=36.78 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=29.8
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.| .|.+|+++++.|.++|++++.+.+.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 35788999988 5889999999999999998755443
No 468
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=74.03 E-value=5.8 Score=37.66 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.3
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++++++.|.|. |.+|+++++.|.++|++|+ +.|.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~-~~~r 40 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVV-LVDR 40 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 378899999985 8999999999999999988 4554
No 469
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=74.01 E-value=5 Score=39.24 Aligned_cols=33 Identities=27% Similarity=0.236 Sum_probs=27.5
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCc
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGA 255 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~ 255 (424)
.|+|+|.|..|..+|..|+++|.+|+ |.|.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~~ 35 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVT-IIERRPD 35 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEE-EEESSSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccc-cchhccc
Confidence 69999999999999999999999977 8886543
No 470
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.97 E-value=7.1 Score=37.04 Aligned_cols=34 Identities=24% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
.++++++.|.| .|.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 46789999998 59999999999999999998543
No 471
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=73.97 E-value=5.6 Score=41.99 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=32.0
Q ss_pred hCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 214 HGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 214 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
+|..-+.+||.|.| -|-||+++++.|.++|.+|+++.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 45666788999999 49999999999999999999764
No 472
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=73.90 E-value=10 Score=37.99 Aligned_cols=34 Identities=18% Similarity=0.439 Sum_probs=28.9
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~ 252 (424)
..|.+|+|.|.|.||..+++++...|++ |+ ++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEeC
Confidence 3689999999999999999999999994 66 4454
No 473
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=73.86 E-value=6.4 Score=34.92 Aligned_cols=32 Identities=47% Similarity=0.670 Sum_probs=26.0
Q ss_pred CeEEEEec-ChHHHHHHHHHHHCC--CEEEEEEcCC
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHEHG--GKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~~G--akVVaVsD~~ 253 (424)
++|+|+|. |+||+++|..|...+ ..++ +.|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-EeccC
Confidence 48999999 999999999998766 4565 66764
No 474
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=73.76 E-value=16 Score=35.23 Aligned_cols=67 Identities=10% Similarity=0.024 Sum_probs=50.9
Q ss_pred CCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCC-CC
Q 014463 194 GREAATGLGVFFATEALLAE-HGKSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNP-NG 261 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~-~G 261 (424)
|.-..|.|..-.+.+.+++. ....++...|-|.|.|. =..+.+.|+..|.+|..|.|.+..-||- ||
T Consensus 156 GsKKsTpfAAQ~aae~aakka~~~GIk~V~V~vKGpGg-REtALRaL~~~GLkIt~I~DvTpiPHNG~NG 224 (233)
T PTZ00090 156 KKLQQSERCAYRIGENIAKKCRRLGIFAVDIKFRRIMR-VETVLQAFYANGLQVTQIIHEPRLPKCGLNA 224 (233)
T ss_pred cCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCh-HHHHHHHHHHCCCEEEEEEECCCCCcCCCCC
Confidence 44568888888888777762 33457788899999995 4455688999999999999988766654 44
No 475
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=73.76 E-value=11 Score=34.30 Aligned_cols=65 Identities=15% Similarity=0.225 Sum_probs=52.6
Q ss_pred CCCchhHHHHHHHHHHHHHH-hCCCCCCCeEEE--------EecChHHHHHHHHHHHCCCEEEEEEcCCCceeC
Q 014463 194 GREAATGLGVFFATEALLAE-HGKSISNMKFAI--------QGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKN 258 (424)
Q Consensus 194 gr~~aTg~Gv~~~~~~~~~~-~g~~l~g~~vaI--------qGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~ 258 (424)
.++..|.|....+.+.+.+. ....++...|-| -|.|.=...+.+.|...|.+|+.|.|.+..-+|
T Consensus 65 ~r~KsTpyAAq~aa~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~DvTPiPhN 138 (149)
T PTZ00129 65 DRDESSPYAAMMAAQDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIEDVTPIPTD 138 (149)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCCCCCC
Confidence 45588999988888887763 345578888889 788988889999999999999999998765544
No 476
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=73.75 E-value=5 Score=40.28 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCCCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEE
Q 014463 215 GKSISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVA 248 (424)
Q Consensus 215 g~~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVa 248 (424)
+.+++|+++.|.|. ...|..+|+.|.+.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 45689999999998 66999999999999999985
No 477
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=73.74 E-value=5.9 Score=39.97 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=33.0
Q ss_pred HhCCCCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 213 EHGKSISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 213 ~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.....++++||.|.| .|-||+|+++.|...|.+|+ ++|.
T Consensus 20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VI-a~Dn 59 (350)
T KOG1429|consen 20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVI-ALDN 59 (350)
T ss_pred hcccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEE-EEec
Confidence 445667889999998 48999999999999999999 5675
No 478
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=73.70 E-value=2.7 Score=47.33 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=28.9
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|..+|..+...|..|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKDIN 345 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEeCC
Confidence 479999999999999999999999998 77764
No 479
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=73.70 E-value=2.1 Score=48.36 Aligned_cols=32 Identities=31% Similarity=0.382 Sum_probs=29.0
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++|+|+|.|.+|+.+|..+...|..|+ +.|.+
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d~~ 367 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKDAT 367 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-EecCC
Confidence 579999999999999999999999998 77764
No 480
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=73.58 E-value=5.9 Score=35.93 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=30.2
Q ss_pred eEEEEecChHHHHHHHHHHHCCCEEEEEEcCCC
Q 014463 222 KFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITG 254 (424)
Q Consensus 222 ~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G 254 (424)
+++|.|.|+.|+.+++.|.+.|.+++++.|.+-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~ 33 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNP 33 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCc
Confidence 478999999999999999999999999999763
No 481
>PRK06182 short chain dehydrogenase; Validated
Probab=73.55 E-value=6.1 Score=37.96 Aligned_cols=31 Identities=16% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCCeEEEEec-ChHHHHHHHHHHHCCCEEEEE
Q 014463 219 SNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 219 ~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaV 249 (424)
+++++.|.|. |.+|+++++.|.++|++|+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5789999995 999999999999999999854
No 482
>PRK07825 short chain dehydrogenase; Provisional
Probab=73.53 E-value=6.7 Score=37.63 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+ +++.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~-~~~r 37 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVA-IGDL 37 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 467889999995 9999999999999999987 4444
No 483
>PLN00198 anthocyanidin reductase; Provisional
Probab=73.44 E-value=5.8 Score=39.56 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=29.5
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
..++++|.|.| .|-+|+++++.|.+.|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999 69999999999999999997553
No 484
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.42 E-value=5.8 Score=37.87 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=29.1
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaV 249 (424)
.++|+++.|.|. +.+|+++|+.|.++|++|+..
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 478999999997 479999999999999999843
No 485
>PRK10537 voltage-gated potassium channel; Provisional
Probab=73.36 E-value=19 Score=37.64 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCCCceeCCCCCCHHHHHHHHHhcCCcccCCCCeeecCCccc----ccc
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDITGAIKNPNGIDVPALLKYKKSNKSLNDFQGGNAMDLNDLL----VHE 295 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~G~i~~~~GlDi~~L~~~~~~~g~v~~~~~~~~i~~~~ll----~~~ 295 (424)
..++.|.|+|.+|+.+++.|.++|..++.| |.+ ...+..+++-.+ + -+.. ++++.| -.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVI-d~d------------~~~~~~~~g~~v--I-~GD~-td~e~L~~AgI~~ 302 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVI-VPL------------GLEHRLPDDADL--I-PGDS-SDSAVLKKAGAAR 302 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEE-ECc------------hhhhhccCCCcE--E-EeCC-CCHHHHHhcCccc
Confidence 457999999999999999999999888744 432 011111111000 0 0111 222333 236
Q ss_pred cceeeeccccCccc---ccccccc--cceEEEecCCCCCCHHHHHHHHhCCc--eEecccc
Q 014463 296 CDVLVPCALGGVLN---KENAADV--KAKFIIEAANHPTDPEADEILSKKGV--VILPDIY 349 (424)
Q Consensus 296 ~DIliPaA~~~~It---~~na~~i--~akiIvEgAN~p~t~eA~~iL~~rGI--~viPD~l 349 (424)
|+.++-+.-.+..| ..+++++ ++|+|+..-| ++..+.|++-|+ .+.|..+
T Consensus 303 A~aVI~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~----~~~~~~L~~~GaD~VIsp~~l 359 (393)
T PRK10537 303 ARAILALRDNDADNAFVVLAAKEMSSDVKTVAAVND----SKNLEKIKRVHPDMIFSPQLL 359 (393)
T ss_pred CCEEEEcCCChHHHHHHHHHHHHhCCCCcEEEEECC----HHHHHHHHhcCCCEEECHHHH
Confidence 77777654332221 2233443 5688886654 566778888875 3445433
No 486
>PRK08017 oxidoreductase; Provisional
Probab=73.33 E-value=5.7 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=26.7
Q ss_pred CeEEEEec-ChHHHHHHHHHHHCCCEEEEEE
Q 014463 221 MKFAIQGF-GNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 221 ~~vaIqGf-GnVG~~~a~~L~~~GakVVaVs 250 (424)
+++.|.|. |.+|+.+++.|.++|++|+.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 57999997 9999999999999999998553
No 487
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=73.20 E-value=13 Score=37.35 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=26.7
Q ss_pred CeEEEEecChHHHHHHHHHHHCCC-EEEEEEcC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGG-KVVAVSDI 252 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~Ga-kVVaVsD~ 252 (424)
++|+|+|.|.||..+|..|..+|. .|+ +.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vv-lvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLV-LLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEE-EEeC
Confidence 589999999999999999988775 755 7787
No 488
>PRK06914 short chain dehydrogenase; Provisional
Probab=73.19 E-value=6.4 Score=37.88 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred CCCeEEEEe-cChHHHHHHHHHHHCCCEEEEEE
Q 014463 219 SNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 219 ~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaVs 250 (424)
+++++.|.| .|.+|+.+++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567888988 59999999999999999998664
No 489
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.18 E-value=6 Score=37.68 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=29.3
Q ss_pred CCCCCeEEEEe-cChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQG-FGNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqG-fGnVG~~~a~~L~~~GakVVaV 249 (424)
+++++++.|.| .+.+|+.+++.|.++|++|+.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 47899999998 5899999999999999999854
No 490
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=73.14 E-value=5.2 Score=42.57 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=30.5
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
...++|+|+|.|..|..+|+.|.+.|.+++ |.+.+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~-vfE~~ 42 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVV-VFERE 42 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEE-EEecC
Confidence 445899999999999999999999999988 77753
No 491
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=73.13 E-value=12 Score=36.40 Aligned_cols=34 Identities=29% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCCCeEEEEecChHHHHHHHHHHHCCCE-EEEEEcC
Q 014463 218 ISNMKFAIQGFGNVGSWAAKFFHEHGGK-VVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfGnVG~~~a~~L~~~Gak-VVaVsD~ 252 (424)
..|.+|+|.|.|.+|..+++++...|++ |+++ |.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 3788999999999999999999999997 6644 54
No 492
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.12 E-value=5.7 Score=38.17 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcC
Q 014463 218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~ 252 (424)
++|+++.|.|.+ -+|..+|+.|.++|++|+ +.+.
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~-~~~r 42 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELW-FTYQ 42 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEE-EEeC
Confidence 688999999986 499999999999999987 4454
No 493
>PRK09242 tropinone reductase; Provisional
Probab=73.08 E-value=6.5 Score=37.29 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|+.+++.|.++|++|+.+ +.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~-~r 41 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIV-AR 41 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 478899999984 899999999999999998844 44
No 494
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.03 E-value=5.7 Score=37.71 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCCCCeEEEEec---ChHHHHHHHHHHHCCCEEEEE
Q 014463 217 SISNMKFAIQGF---GNVGSWAAKFFHEHGGKVVAV 249 (424)
Q Consensus 217 ~l~g~~vaIqGf---GnVG~~~a~~L~~~GakVVaV 249 (424)
+++++++.|.|. |.+|..+++.|.++|++|+.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 468899999996 479999999999999999854
No 495
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.95 E-value=5.8 Score=38.71 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCCeEEEEecC---hHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 218 ISNMKFAIQGFG---NVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 218 l~g~~vaIqGfG---nVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
++++++.|.|.+ .+|+.+|+.|.+.|++|+ +++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEecC
Confidence 578999999974 799999999999999988 55653
No 496
>PRK07478 short chain dehydrogenase; Provisional
Probab=72.92 E-value=6.7 Score=37.14 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
+++++++.|.|. |.+|..+++.|.+.|++|+.+ +.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~-~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVG-AR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 467889999995 899999999999999998844 44
No 497
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=72.91 E-value=5.2 Score=41.10 Aligned_cols=32 Identities=28% Similarity=0.275 Sum_probs=28.3
Q ss_pred CeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 221 MKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 221 ~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
.+|+|+|.|-+|..+|..|++.|.+|+ |.|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 379999999999999999999999986 77753
No 498
>PRK10637 cysG siroheme synthase; Provisional
Probab=72.89 E-value=4.7 Score=42.85 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=31.5
Q ss_pred CCCCCCeEEEEecChHHHHHHHHHHHCCCEEEEEE
Q 014463 216 KSISNMKFAIQGFGNVGSWAAKFFHEHGGKVVAVS 250 (424)
Q Consensus 216 ~~l~g~~vaIqGfGnVG~~~a~~L~~~GakVVaVs 250 (424)
.+++|++|.|.|.|+|+..=++.|.+.|++|+-||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 46899999999999999998999999999998565
No 499
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.85 E-value=5.4 Score=41.84 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHCCCEEEEEEcCC
Q 014463 220 NMKFAIQGFGNVGSWAAKFFHEHGGKVVAVSDIT 253 (424)
Q Consensus 220 g~~vaIqGfGnVG~~~a~~L~~~GakVVaVsD~~ 253 (424)
+-+|+|.|.|..|..+|++|++.|++|. ++|.+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 3489999999999999999999999976 78964
No 500
>PRK07063 short chain dehydrogenase; Provisional
Probab=72.85 E-value=6.5 Score=37.38 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCCCCeEEEEec-ChHHHHHHHHHHHCCCEEEEEEcC
Q 014463 217 SISNMKFAIQGF-GNVGSWAAKFFHEHGGKVVAVSDI 252 (424)
Q Consensus 217 ~l~g~~vaIqGf-GnVG~~~a~~L~~~GakVVaVsD~ 252 (424)
.++++++.|.|. |.+|+++++.|.++|++|+ +.+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv-~~~r 39 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVA-LADL 39 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 378899999994 8999999999999999988 4554
Done!