Query 014464
Match_columns 424
No_of_seqs 174 out of 1340
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 05:23:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 1E-101 2E-106 785.5 38.6 341 75-423 46-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 7E-101 1E-105 735.1 29.6 331 75-424 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 8E-95 1.7E-99 740.4 34.9 323 75-422 2-332 (431)
4 PRK12556 tryptophanyl-tRNA syn 100.0 5.3E-93 1.2E-97 714.0 33.8 319 75-421 3-331 (332)
5 PRK00927 tryptophanyl-tRNA syn 100.0 6.5E-93 1.4E-97 714.9 34.4 328 75-423 1-332 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 8E-92 1.7E-96 713.1 35.5 334 75-423 2-398 (398)
7 COG0180 TrpS Tryptophanyl-tRNA 100.0 2.1E-90 4.5E-95 684.0 28.5 305 74-403 4-314 (314)
8 PRK12282 tryptophanyl-tRNA syn 100.0 1.8E-89 3.9E-94 689.0 34.5 324 75-423 2-331 (333)
9 TIGR00233 trpS tryptophanyl-tR 100.0 6.8E-88 1.5E-92 676.9 32.6 319 74-421 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 3.7E-74 8E-79 566.4 26.3 274 77-375 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 8.6E-73 1.9E-77 574.2 27.4 286 74-400 65-365 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 7.3E-69 1.6E-73 539.7 24.7 267 74-385 29-322 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 6.3E-68 1.4E-72 540.7 25.9 268 74-385 65-365 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.1E-65 6.6E-70 549.1 27.7 281 74-386 31-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 8.1E-60 1.8E-64 480.5 27.4 275 74-387 72-369 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 1.5E-60 3.2E-65 471.6 17.0 275 74-377 4-292 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 2E-58 4.3E-63 453.1 24.8 248 77-375 1-273 (273)
18 cd00805 TyrRS_core catalytic c 100.0 1.1E-58 2.3E-63 454.3 20.7 249 76-375 1-269 (269)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 2.6E-50 5.7E-55 415.3 23.5 258 74-382 32-314 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 2.5E-47 5.5E-52 393.0 23.5 259 74-384 32-314 (410)
21 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.3E-47 7.2E-52 365.9 18.1 268 74-386 33-334 (360)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.6E-43 1E-47 358.2 19.3 242 75-378 30-294 (377)
23 KOG2145 Cytoplasmic tryptophan 100.0 2.6E-42 5.6E-47 332.2 12.8 276 74-387 84-382 (397)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 4.3E-40 9.3E-45 354.7 23.9 228 112-384 405-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1E-34 2.2E-39 296.8 18.7 271 75-387 32-358 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 8.6E-18 1.9E-22 168.5 17.1 257 75-378 63-351 (467)
27 cd00808 GluRS_core catalytic c 99.6 7.4E-15 1.6E-19 142.0 11.0 172 83-315 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.5 4.2E-13 9E-18 119.4 10.7 63 209-293 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.8 2.7E-08 5.8E-13 96.0 11.1 169 83-314 9-181 (230)
30 cd00674 LysRS_core_class_I cat 98.5 9.6E-07 2.1E-11 90.3 13.0 86 75-168 20-132 (353)
31 PRK00750 lysK lysyl-tRNA synth 98.5 8E-07 1.7E-11 95.1 11.7 65 220-310 233-304 (510)
32 PRK05710 glutamyl-Q tRNA(Asp) 98.2 4.7E-06 1E-10 83.5 9.3 175 83-294 13-242 (299)
33 PRK14895 gltX glutamyl-tRNA sy 98.2 3.3E-05 7.1E-10 82.5 15.0 198 77-315 4-269 (513)
34 TIGR00464 gltX_bact glutamyl-t 98.1 0.00023 5E-09 75.7 20.2 192 83-315 9-270 (470)
35 cd02156 nt_trans nucleotidyl t 98.1 1.8E-05 3.8E-10 66.9 8.1 57 78-146 2-58 (105)
36 PRK01406 gltX glutamyl-tRNA sy 98.0 0.0001 2.2E-09 78.5 14.4 192 83-314 12-279 (476)
37 TIGR00467 lysS_arch lysyl-tRNA 97.8 0.00013 2.9E-09 78.2 10.8 83 75-165 19-128 (515)
38 TIGR03838 queuosine_YadB gluta 97.7 0.00037 8E-09 69.1 12.5 175 83-294 8-235 (272)
39 PLN02627 glutamyl-tRNA synthet 97.7 0.0041 9E-08 66.9 21.0 98 77-187 47-159 (535)
40 cd09287 GluRS_non_core catalyt 97.6 0.00026 5.7E-09 68.9 9.6 162 80-293 6-171 (240)
41 COG0008 GlnS Glutamyl- and glu 97.6 0.00029 6.3E-09 74.8 9.9 180 78-294 10-256 (472)
42 cd00668 Ile_Leu_Val_MetRS_core 97.6 0.0005 1.1E-08 68.9 11.1 59 221-303 226-285 (312)
43 cd00807 GlnRS_core catalytic c 97.6 0.00033 7.1E-09 68.1 9.1 158 83-294 9-170 (238)
44 PF01921 tRNA-synt_1f: tRNA sy 97.5 0.00046 9.9E-09 70.8 10.0 69 218-311 231-307 (360)
45 COG1384 LysS Lysyl-tRNA synthe 97.5 0.00016 3.5E-09 76.4 5.9 84 74-165 19-131 (521)
46 PRK12410 glutamylglutaminyl-tR 97.4 0.00067 1.5E-08 71.3 9.2 90 83-187 7-104 (433)
47 PRK12558 glutamyl-tRNA synthet 97.4 0.0012 2.6E-08 69.8 10.9 90 83-187 10-107 (445)
48 PLN03233 putative glutamate-tR 97.4 0.00096 2.1E-08 71.6 10.3 93 78-185 12-114 (523)
49 PRK01611 argS arginyl-tRNA syn 97.3 0.00031 6.7E-09 75.3 5.4 196 77-308 115-339 (507)
50 PTZ00402 glutamyl-tRNA synthet 97.3 0.0016 3.5E-08 70.8 10.6 179 77-293 52-293 (601)
51 PF00749 tRNA-synt_1c: tRNA sy 97.2 0.0028 6.2E-08 64.0 11.3 92 83-188 9-108 (314)
52 cd00671 ArgRS_core catalytic c 97.2 0.00098 2.1E-08 63.4 7.2 156 79-246 6-184 (212)
53 PRK00260 cysS cysteinyl-tRNA s 97.1 0.032 6.9E-07 59.4 18.7 76 75-155 23-110 (463)
54 PRK04156 gltX glutamyl-tRNA sy 97.0 0.0051 1.1E-07 66.8 10.9 181 76-293 102-343 (567)
55 PLN02907 glutamate-tRNA ligase 96.8 0.0061 1.3E-07 68.1 10.3 94 77-185 213-316 (722)
56 cd00672 CysRS_core catalytic c 96.7 0.014 3.1E-07 55.8 10.4 74 76-154 22-105 (213)
57 cd00812 LeuRS_core catalytic c 96.6 0.0076 1.6E-07 60.7 8.6 67 84-155 11-87 (314)
58 PRK05347 glutaminyl-tRNA synth 95.5 0.041 9E-07 59.6 8.1 95 78-186 30-134 (554)
59 PTZ00437 glutaminyl-tRNA synth 95.4 0.037 8.1E-07 60.0 7.3 95 77-186 51-155 (574)
60 TIGR00463 gltX_arch glutamyl-t 95.3 0.046 9.9E-07 59.5 7.5 94 77-185 93-196 (560)
61 TIGR00440 glnS glutaminyl-tRNA 95.2 0.052 1.1E-06 58.5 7.7 91 83-187 8-106 (522)
62 TIGR00435 cysS cysteinyl-tRNA 94.9 0.14 3E-06 54.7 9.7 76 76-156 23-108 (465)
63 PLN02859 glutamine-tRNA ligase 94.8 0.069 1.5E-06 59.9 7.4 93 78-185 265-367 (788)
64 PRK14703 glutaminyl-tRNA synth 94.7 0.093 2E-06 59.1 7.9 96 78-187 32-137 (771)
65 TIGR00234 tyrS tyrosyl-tRNA sy 90.9 0.57 1.2E-05 48.7 6.7 19 332-350 280-298 (377)
66 PLN02224 methionine-tRNA ligas 89.9 1.5 3.3E-05 48.4 9.4 77 74-155 69-156 (616)
67 PRK00133 metG methionyl-tRNA s 89.7 0.83 1.8E-05 50.9 7.2 86 75-168 3-99 (673)
68 PF09334 tRNA-synt_1g: tRNA sy 86.6 1.8 4E-05 45.1 7.1 78 83-168 9-96 (391)
69 PRK12268 methionyl-tRNA synthe 86.4 1.8 3.9E-05 46.9 7.1 76 76-156 4-92 (556)
70 PRK05743 ileS isoleucyl-tRNA s 82.7 1 2.2E-05 52.1 3.3 59 218-302 542-603 (912)
71 KOG1147 Glutamyl-tRNA syntheta 82.6 2.9 6.3E-05 45.3 6.3 73 77-166 200-276 (712)
72 COG0143 MetG Methionyl-tRNA sy 82.4 3.5 7.5E-05 45.2 7.1 77 83-168 15-102 (558)
73 cd00818 IleRS_core catalytic c 81.9 1.4 3E-05 44.9 3.7 39 84-127 12-52 (338)
74 PLN02610 probable methionyl-tR 79.5 3.1 6.8E-05 47.5 5.8 86 75-169 18-116 (801)
75 PRK12300 leuS leucyl-tRNA synt 79.3 1.1 2.5E-05 51.5 2.3 58 220-303 529-589 (897)
76 PRK11893 methionyl-tRNA synthe 79.2 1 2.2E-05 48.1 1.7 68 83-155 11-88 (511)
77 cd00817 ValRS_core catalytic c 78.9 1.4 3E-05 45.8 2.5 60 220-303 295-355 (382)
78 TIGR00456 argS arginyl-tRNA sy 78.4 1.7 3.7E-05 47.5 3.1 62 223-311 330-392 (566)
79 PRK14900 valS valyl-tRNA synth 77.3 1.8 4E-05 50.7 3.2 61 220-304 490-551 (1052)
80 TIGR00395 leuS_arch leucyl-tRN 76.7 1.6 3.4E-05 50.6 2.4 59 220-304 572-633 (938)
81 cd00814 MetRS_core catalytic c 76.5 3.7 7.9E-05 41.4 4.7 68 84-156 11-88 (319)
82 PRK00390 leuS leucyl-tRNA synt 75.2 7.8 0.00017 44.3 7.4 75 75-155 33-119 (805)
83 TIGR00392 ileS isoleucyl-tRNA 74.8 2.2 4.7E-05 49.0 2.8 14 220-233 563-576 (861)
84 PRK11893 methionyl-tRNA synthe 74.7 7.7 0.00017 41.4 6.9 60 220-304 253-312 (511)
85 PRK12267 methionyl-tRNA synthe 74.4 30 0.00065 38.5 11.6 67 84-155 15-91 (648)
86 PRK12267 methionyl-tRNA synthe 72.4 6.3 0.00014 43.7 5.7 59 221-304 254-312 (648)
87 TIGR00398 metG methionyl-tRNA 71.1 6.1 0.00013 42.6 5.1 68 84-156 10-87 (530)
88 PRK12418 cysteinyl-tRNA synthe 70.7 3.9 8.5E-05 42.7 3.3 70 210-303 203-273 (384)
89 PRK13804 ileS isoleucyl-tRNA s 70.4 2.8 6E-05 48.8 2.4 16 218-233 580-595 (961)
90 PRK05729 valS valyl-tRNA synth 70.3 2.9 6.4E-05 48.1 2.6 62 219-304 471-533 (874)
91 PF00133 tRNA-synt_1: tRNA syn 70.0 3.6 7.9E-05 45.3 3.1 60 220-302 513-572 (601)
92 PRK13208 valS valyl-tRNA synth 67.5 4.9 0.00011 45.8 3.5 59 221-303 486-545 (800)
93 PLN02943 aminoacyl-tRNA ligase 66.2 5.4 0.00012 46.5 3.6 76 204-304 518-596 (958)
94 TIGR00396 leuS_bact leucyl-tRN 66.1 10 0.00023 43.5 5.8 75 76-155 31-116 (842)
95 PRK14536 cysS cysteinyl-tRNA s 65.6 27 0.00058 37.8 8.4 76 75-155 23-119 (490)
96 TIGR00422 valS valyl-tRNA synt 65.6 5 0.00011 46.1 3.2 61 220-304 477-538 (861)
97 cd00814 MetRS_core catalytic c 65.5 4.6 9.9E-05 40.7 2.5 58 221-303 235-292 (319)
98 PRK06039 ileS isoleucyl-tRNA s 65.3 5.3 0.00011 46.6 3.3 16 219-234 543-558 (975)
99 cd00818 IleRS_core catalytic c 64.5 6.8 0.00015 39.9 3.6 58 220-303 251-311 (338)
100 PRK14535 cysS cysteinyl-tRNA s 63.6 50 0.0011 37.2 10.2 78 74-156 247-335 (699)
101 PLN02843 isoleucyl-tRNA synthe 63.2 5.4 0.00012 46.6 2.8 16 218-233 561-576 (974)
102 PLN02381 valyl-tRNA synthetase 63.1 6 0.00013 46.6 3.2 60 219-303 606-667 (1066)
103 COG0495 LeuS Leucyl-tRNA synth 62.4 18 0.0004 41.4 6.7 85 74-164 34-130 (814)
104 COG0495 LeuS Leucyl-tRNA synth 62.2 56 0.0012 37.6 10.5 63 221-303 526-591 (814)
105 PLN02959 aminoacyl-tRNA ligase 61.7 7.6 0.00016 45.9 3.7 59 220-303 670-730 (1084)
106 TIGR03447 mycothiol_MshC cyste 61.6 6.7 0.00015 41.4 3.0 74 75-153 36-120 (411)
107 PTZ00419 valyl-tRNA synthetase 60.9 7.9 0.00017 45.3 3.7 61 219-303 536-597 (995)
108 PLN02882 aminoacyl-tRNA ligase 59.7 8.6 0.00019 45.8 3.7 76 202-301 547-624 (1159)
109 COG0060 IleS Isoleucyl-tRNA sy 59.4 33 0.00071 40.0 8.1 27 278-313 594-620 (933)
110 PLN02286 arginine-tRNA ligase 58.3 12 0.00026 41.1 4.4 66 223-308 330-395 (576)
111 PLN02660 pantoate--beta-alanin 56.6 39 0.00084 34.0 7.3 69 220-318 145-213 (284)
112 COG0018 ArgS Arginyl-tRNA synt 56.3 11 0.00023 41.7 3.5 68 223-313 337-405 (577)
113 PRK12268 methionyl-tRNA synthe 56.3 7.9 0.00017 42.0 2.5 57 223-303 289-346 (556)
114 PF04048 Sec8_exocyst: Sec8 ex 56.1 1.3E+02 0.0028 26.8 9.9 87 332-422 19-105 (142)
115 cd02168 NMNAT_Nudix Nicotinami 55.1 56 0.0012 30.4 7.7 75 82-174 8-85 (181)
116 cd00817 ValRS_core catalytic c 55.0 11 0.00024 39.1 3.3 39 84-127 12-52 (382)
117 PLN02563 aminoacyl-tRNA ligase 54.1 33 0.0007 40.2 7.1 76 75-155 111-198 (963)
118 PF01406 tRNA-synt_1e: tRNA sy 53.9 10 0.00023 38.3 2.7 76 75-155 8-94 (300)
119 KOG1149 Glutamyl-tRNA syntheta 53.7 19 0.00042 38.3 4.7 98 76-187 34-147 (524)
120 PLN02563 aminoacyl-tRNA ligase 50.9 12 0.00025 43.8 2.9 27 220-246 615-642 (963)
121 TIGR00396 leuS_bact leucyl-tRN 50.3 11 0.00025 43.2 2.7 24 220-243 519-543 (842)
122 TIGR00398 metG methionyl-tRNA 50.0 13 0.00027 40.2 2.8 55 224-304 285-340 (530)
123 PRK14536 cysS cysteinyl-tRNA s 48.3 13 0.00027 40.3 2.4 71 207-302 219-290 (490)
124 PTZ00399 cysteinyl-tRNA-synthe 47.9 10 0.00022 42.3 1.8 71 210-304 257-328 (651)
125 PRK12451 arginyl-tRNA syntheta 47.1 21 0.00045 39.2 4.0 61 222-307 326-387 (562)
126 COG2442 Uncharacterized conser 46.2 52 0.0011 26.8 5.2 43 330-374 29-71 (79)
127 PF00750 tRNA-synt_1d: tRNA sy 44.1 11 0.00024 38.8 1.2 73 222-315 240-312 (354)
128 PLN02946 cysteine-tRNA ligase 43.2 1.6E+02 0.0034 32.5 9.9 74 76-154 81-165 (557)
129 PF05957 DUF883: Bacterial pro 43.0 1.2E+02 0.0026 24.8 7.1 57 361-417 14-71 (94)
130 PRK00133 metG methionyl-tRNA s 42.3 15 0.00032 41.1 2.0 31 265-303 311-341 (673)
131 PRK00390 leuS leucyl-tRNA synt 42.2 19 0.00041 41.2 2.8 24 220-243 522-546 (805)
132 PF01406 tRNA-synt_1e: tRNA sy 42.0 65 0.0014 32.7 6.2 68 210-302 195-263 (300)
133 PRK14534 cysS cysteinyl-tRNA s 40.0 90 0.002 33.8 7.3 76 75-155 21-117 (481)
134 PLN02946 cysteine-tRNA ligase 39.9 14 0.00031 40.4 1.4 71 207-302 263-334 (557)
135 PRK13208 valS valyl-tRNA synth 38.2 35 0.00075 39.0 4.1 76 75-155 39-138 (800)
136 PTZ00427 isoleucine-tRNA ligas 37.4 28 0.00061 41.7 3.3 34 202-235 652-687 (1205)
137 PLN02224 methionine-tRNA ligas 36.9 26 0.00056 39.0 2.7 60 220-304 320-379 (616)
138 PF00750 tRNA-synt_1d: tRNA sy 36.4 46 0.00099 34.2 4.3 43 79-125 26-70 (354)
139 COG0143 MetG Methionyl-tRNA sy 36.3 1.1E+02 0.0024 33.8 7.3 31 265-303 315-345 (558)
140 COG4320 Uncharacterized protei 35.7 19 0.00042 36.9 1.4 27 85-125 62-88 (410)
141 PF04255 DUF433: Protein of un 34.9 55 0.0012 24.4 3.5 38 330-369 17-54 (56)
142 PHA01929 putative scaffolding 32.6 3.1E+02 0.0067 27.5 9.0 37 328-364 115-152 (306)
143 PTZ00419 valyl-tRNA synthetase 31.4 48 0.001 38.9 3.9 48 76-128 62-112 (995)
144 COG0018 ArgS Arginyl-tRNA synt 31.3 44 0.00095 36.9 3.4 40 79-127 123-169 (577)
145 COG0525 ValS Valyl-tRNA synthe 30.2 31 0.00068 39.8 2.1 37 84-126 44-82 (877)
146 COG0215 CysS Cysteinyl-tRNA sy 30.2 19 0.0004 38.6 0.3 71 210-304 210-281 (464)
147 TIGR00018 panC pantoate--beta- 29.9 2.1E+02 0.0046 28.8 7.6 69 220-318 142-210 (282)
148 PF02662 FlpD: Methyl-viologen 29.4 1.9E+02 0.0042 25.2 6.5 70 81-164 33-103 (124)
149 PLN02610 probable methionyl-tR 28.8 23 0.00049 40.6 0.7 57 224-303 304-360 (801)
150 PRK10404 hypothetical protein; 28.6 2.8E+02 0.0061 23.5 7.1 57 361-417 21-78 (101)
151 TIGR00456 argS arginyl-tRNA sy 28.2 54 0.0012 35.9 3.4 44 77-125 116-162 (566)
152 cd02166 NMNAT_Archaea Nicotina 27.8 2.6E+02 0.0056 25.3 7.3 16 150-165 62-77 (163)
153 PRK14534 cysS cysteinyl-tRNA s 27.6 35 0.00076 36.8 1.8 65 213-302 225-290 (481)
154 PLN02843 isoleucyl-tRNA synthe 26.9 81 0.0017 37.1 4.7 76 76-156 34-136 (974)
155 KOG1148 Glutaminyl-tRNA synthe 26.2 95 0.0021 34.5 4.7 99 77-191 248-357 (764)
156 PF09334 tRNA-synt_1g: tRNA sy 26.1 19 0.00042 37.6 -0.5 30 265-302 309-338 (391)
157 KOG0433 Isoleucyl-tRNA synthet 26.1 4.4E+02 0.0095 30.4 9.7 28 391-418 746-775 (937)
158 PF09551 Spore_II_R: Stage II 25.6 2.4E+02 0.0052 25.2 6.4 49 362-414 19-67 (130)
159 PRK13477 bifunctional pantoate 23.4 4.9E+02 0.011 28.5 9.5 27 220-246 140-166 (512)
160 PLN02286 arginine-tRNA ligase 23.0 72 0.0016 35.1 3.2 38 79-125 123-167 (576)
161 COG0525 ValS Valyl-tRNA synthe 23.0 29 0.00063 40.0 0.2 15 284-302 522-536 (877)
162 PRK14535 cysS cysteinyl-tRNA s 22.6 3.5E+02 0.0075 30.8 8.3 35 208-244 433-468 (699)
163 PRK12451 arginyl-tRNA syntheta 21.6 77 0.0017 34.8 3.1 42 79-126 119-164 (562)
164 TIGR03447 mycothiol_MshC cyste 21.2 2.2E+02 0.0047 30.2 6.2 69 210-302 230-299 (411)
165 COG4575 ElaB Uncharacterized c 20.7 2.5E+02 0.0054 24.2 5.2 21 400-420 38-58 (104)
166 TIGR00422 valS valyl-tRNA synt 20.5 48 0.001 38.2 1.3 48 75-127 34-84 (861)
167 KOG0859 Synaptobrevin/VAMP-lik 20.2 5.5E+02 0.012 24.8 7.9 67 349-417 80-150 (217)
168 KOG2007 Cysteinyl-tRNA synthet 20.1 59 0.0013 35.3 1.7 38 205-242 242-282 (586)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.1e-101 Score=785.52 Aligned_cols=341 Identities=83% Similarity=1.280 Sum_probs=324.0
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
+++|||||||||.+|||||+|+|++|+++ |++++++|+||||||+|++++++++++++++++++|+||||||
T Consensus 46 ~~~v~sGiqPSG~lHLGnylGai~~~v~l--------Q~~~~~~~~IADlHAlt~~~~~~~lr~~~~~~~a~~lA~GlDP 117 (389)
T PLN02886 46 KKRVVSGVQPTGSIHLGNYLGAIKNWVAL--------QETYDTFFCVVDLHAITLPHDPRELGKATRSTAAIYLACGIDP 117 (389)
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHHHHH--------hccCCEEEEEecHHHhhCCCCHHHHHHHHHHHHHHHHHcCcCc
Confidence 56899999999999999999999999999 8999999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|++||+||++++|.||+|+|+|.+++++|+||+|||++.+..+.+++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 118 ~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~a~~VPVG~DQ~qH 197 (389)
T PLN02886 118 SKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQADLVPVGEDQKQH 197 (389)
T ss_pred cceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcCCCeEEEccchHHH
Confidence 99999999999999999999999999999999999999987765467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+|||||||+|||+.||....+++|.+...+|++|++++++.+++||||+||++|||||+|+++|+|+|+|+||+|++|||
T Consensus 198 ~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~e~I~kKI~ 277 (389)
T PLN02886 198 LELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIK 277 (389)
T ss_pred HHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCHHHHHHHHh
Confidence 99999999999999986544455555557899999999876689999999888999999987899999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHH
Q 014464 315 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 394 (424)
Q Consensus 315 kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~ 394 (424)
+|+||+.+++.+++|++|+++|++.+|..+++.+++|++++|.++++++||+.|+++|+++|+|||+||+++++|++||+
T Consensus 278 ~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pirer~~~l~~d~~~l~ 357 (389)
T PLN02886 278 RCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRYEEIMSDPSYLD 357 (389)
T ss_pred cCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 395 KVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 395 ~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
+||++|++|||++|++||++||++|||..
T Consensus 358 ~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 358 SVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999953
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-101 Score=735.12 Aligned_cols=331 Identities=54% Similarity=0.844 Sum_probs=320.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCc----eEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHc
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSY----ETLFFIVDLHAITLPYDTQQLSKATRETAAIYLAC 150 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~----~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~ 150 (424)
+.++||||||||.+|||||+|++++|++| |+.+ .|+|+|+|+||+|.|.++.++|+++.++++.+|||
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~L--------Q~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAc 84 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQL--------QNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLAC 84 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHH--------HHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999 7754 47999999999999999999999999999999999
Q ss_pred CccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccc
Q 014464 151 GIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 230 (424)
Q Consensus 151 GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~D 230 (424)
|+||+|+.+|+||+|++|.|+.|+|+|.++++||+||+|||+|+.+.+.+.+++|+|+||+|||||||+|++|+||||+|
T Consensus 85 GIdp~Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeD 164 (347)
T KOG2713|consen 85 GIDPEKSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGED 164 (347)
T ss_pred ccCcccceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCcc
Confidence 99999999999999999999999999999999999999999998766667899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHH
Q 014464 231 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 310 (424)
Q Consensus 231 Q~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~ 310 (424)
|.||+||+|+||++||+.||+ ++|++|+.++...+++|++|+||.+|||||+|++.++|+|+|+|+.|.
T Consensus 165 QsQHleL~r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~ 233 (347)
T KOG2713|consen 165 QSQHLELARHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIV 233 (347)
T ss_pred HHHHHHHHHHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHH
Confidence 999999999999999999997 679999999987568999999999999999999999999999999999
Q ss_pred HHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCh
Q 014464 311 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDS 390 (424)
Q Consensus 311 kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~ 390 (424)
+||+||.||....++||+.+||+++|+++||+.+++.+++|+.+++.+++++++|..|||+|+++|.|||++|+++.+++
T Consensus 234 ~Ki~ka~TD~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~ 313 (347)
T KOG2713|consen 234 KKIKKAQTDNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEP 313 (347)
T ss_pred HHHHHHhcccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Q 014464 391 AYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424 (424)
Q Consensus 391 ~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~~ 424 (424)
+|+++||.+|++|||++|.+||.+||+.|||..|
T Consensus 314 ~~l~kvl~~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 314 EYLDKVLEEGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999754
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-95 Score=740.42 Aligned_cols=323 Identities=36% Similarity=0.600 Sum_probs=300.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
..+|||||||||.+|||||+|+|++|+.+|. |.+++|+||||||||+|++.+++++++++++++++|+||||||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~------q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDP 75 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASR------QPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDP 75 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHH------hCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3689999999999999999999999999921 2389999999999999988899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhh---C---CCCccccchhhhHHHHhhhhccccceEecc
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVG 228 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~---g---~~~~~~g~l~YPvLQAADIl~~~ad~vpvG 228 (424)
+|++||+||++++|+||+|+|+|++++++|+||+|||++.... + .+++++|+|+||+|||||||+|++|+||||
T Consensus 76 ek~~if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG 155 (431)
T PRK12284 76 ERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVG 155 (431)
T ss_pred cceEEEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEc
Confidence 9999999999999999999999999999999999999875332 1 145899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014464 229 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308 (424)
Q Consensus 229 ~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~ 308 (424)
.||+||+|||||||+|||+.||. ++|++|++++...+++|||| +| +|||||+ +|+|+|+|+|++
T Consensus 156 ~DQ~qHlELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~ 219 (431)
T PRK12284 156 RDQIQHIEMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREE 219 (431)
T ss_pred chhHHHHHHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHH
Confidence 99999999999999999999974 46999999998767899999 55 6999998 489999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014464 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEI 386 (424)
Q Consensus 309 I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~-~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L~pirer~~~~ 386 (424)
|++|||+|+||+.. ..++++|++||+|+||++|++ +++++++++|. +++|++||+.|+++|+++|+|||+||+++
T Consensus 220 I~kKI~~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l 296 (431)
T PRK12284 220 LKKAIFSIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEAL 296 (431)
T ss_pred HHHHHhcCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999865 345789999999999999975 67999999997 78999999999999999999999999999
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 014464 387 MSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 422 (424)
Q Consensus 387 ~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~ 422 (424)
++|+++|++||++|++|||++|++||++||++|||.
T Consensus 297 ~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 297 IARPADIEDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999999999999999985
No 4
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.3e-93 Score=714.04 Aligned_cols=319 Identities=37% Similarity=0.605 Sum_probs=297.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccC--ceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCc
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNS--YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGI 152 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~--~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~Gl 152 (424)
+.++||||||||.+|||||+|++++|+++ |+. ++++|+||||||+|.+++++.+++++++++++|+||||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~l--------q~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~Gl 74 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQM--------AKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGL 74 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHH--------HHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheee
Confidence 46999999999999999999999999999 664 55999999999998778999999999999999999999
Q ss_pred cCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC------CCCccccchhhhHHHHhhhhccccceEe
Q 014464 153 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVP 226 (424)
Q Consensus 153 Dp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g------~~~~~~g~l~YPvLQAADIl~~~ad~vp 226 (424)
||+|++||+||++++|++|+|+++|.+++|||+||+|||++..... ++++++|+|+||+|||||||+|++|+||
T Consensus 75 DP~k~~if~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~Vp 154 (332)
T PRK12556 75 DPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVP 154 (332)
T ss_pred cccceEEEECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEE
Confidence 9999999999999999999999999999999999999999865321 2467999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014464 227 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 306 (424)
Q Consensus 227 vG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~ 306 (424)
||+||+||+|||||||+|||++|| .+|++|+++++++.+++||| +| +|||||++ |+|+|+|+|
T Consensus 155 vG~DQ~qhleLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p 217 (332)
T PRK12556 155 VGKDQIQHIEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQ 217 (332)
T ss_pred eccccHHHHHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCH
Confidence 999999999999999999999998 57999999987655799999 66 69999984 789999999
Q ss_pred HHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 307 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 307 e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~-~~~eel~~~y~-~l~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
++|++||++|+||+.+ .+.+++|++||+++||++|++ +++++++++|. +++|++||+.||+.|+++|+|||+||+
T Consensus 218 ~~I~kKI~ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~ 294 (332)
T PRK12556 218 EKLRKLIFKIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYA 294 (332)
T ss_pred HHHHHHHHHhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 245789999999999999975 67999999998 789999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014464 385 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421 (424)
Q Consensus 385 ~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl 421 (424)
++++|+++|++||++|++|||++|++||++||++|||
T Consensus 295 ~~~~~~~~~~~il~~G~~kA~~~A~~tl~~v~~~~g~ 331 (332)
T PRK12556 295 MYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGF 331 (332)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999998
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-93 Score=714.87 Aligned_cols=328 Identities=57% Similarity=0.939 Sum_probs=311.1
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
++++||||+|||.+|||||+|+|++|+++ |+.++++|+||||||+|++.+++++++++++++++|+|||+||
T Consensus 1 ~~~v~~G~~PTG~lHLG~~~g~~~~~~~l--------Q~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp 72 (333)
T PRK00927 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVEL--------QDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDP 72 (333)
T ss_pred CCEEEEeeCCCccchHHhHHHHHHHHHHH--------HhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccCh
Confidence 36899999999999999999999999999 8889999999999999988899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|+.||+||+|++|.+++|+++|.+++++|+|+++||++..+. ++++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 73 ~k~~if~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~-~~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h 151 (333)
T PRK00927 73 EKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAKQ-KENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQH 151 (333)
T ss_pred hheEEEEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhcc-CCCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHH
Confidence 9999999999999999999999999999999999999876443 368899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+|||||||++||++|| .+|++|+++++.++++||||+++++|||||+|++.|+|+|+|+|++|++||+
T Consensus 152 ~elaRdia~~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~ 219 (333)
T PRK00927 152 LELTRDIARRFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIK 219 (333)
T ss_pred HHHHHHHHHHhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHH
Confidence 9999999999999998 5699999999876689999976667999999877799999999999999999
Q ss_pred hccCCCCC--CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcCh
Q 014464 315 RCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDS 390 (424)
Q Consensus 315 kA~Td~~~--~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~ 390 (424)
+|+||+.. .+.++++++|++||++.||++|+++++++++++|. +++|++||+.||+.|+++|+|+|++|+++++|+
T Consensus 220 ~a~td~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~ 299 (333)
T PRK00927 220 KAVTDSERLREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADP 299 (333)
T ss_pred hCCCCCCcccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 99999976 45578899999999999999999999999999998 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 391 AYLDKVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 391 ~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
++|++||++|++|||++|++||++||++|||.+
T Consensus 300 ~~~~~il~~G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 300 AYLDEILAEGAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999964
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8e-92 Score=713.05 Aligned_cols=334 Identities=36% Similarity=0.624 Sum_probs=304.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcc
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGID 153 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlD 153 (424)
+.+|||||||||.+|||||+|++++|+++ |++++++|+||||||+|++. +++++++++++++++|+|||||
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~l--------q~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlD 73 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKL--------QHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVD 73 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHH--------hcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 35899999999999999999999999999 89999999999999999864 9999999999999999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhccccceEecccchH
Q 014464 154 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 232 (424)
Q Consensus 154 p~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~ 232 (424)
|+|++||+||++++|+||+|+|+|.+++++|+||+|||++..+.. .++.++|+++||+|||||||+|++|+||||+||+
T Consensus 74 P~k~~if~QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~ 153 (398)
T PRK12283 74 PAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQV 153 (398)
T ss_pred ccceEEEECCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccH
Confidence 999999999999999999999999999999999999999876521 3578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCcccc---------c-----------------------------------------------
Q 014464 233 QHLELTRELAERVNYLYGGRKWK---------K----------------------------------------------- 256 (424)
Q Consensus 233 ~hieLaRdia~r~n~~~g~~~~~---------~----------------------------------------------- 256 (424)
||+|||||||+|||+.||...+. +
T Consensus 154 qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (398)
T PRK12283 154 PHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLF 233 (398)
T ss_pred HHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhcccc
Confidence 99999999999999999852110 0
Q ss_pred --cCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCcc
Q 014464 257 --LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPEC 334 (424)
Q Consensus 257 --~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~ 334 (424)
..+.++.+|+.|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++||++|+||+.+...+++ ++|++
T Consensus 234 ~~~~~~~~~~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~~-g~Pe~ 306 (398)
T PRK12283 234 GYLEGAGKIILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTDP-GDPEK 306 (398)
T ss_pred ccccccCCcccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCCC-CCCCc
Confidence 012233469999999855 5899999 77 7999996 47999999999999999999999987555544 99999
Q ss_pred chHHHHHHhcCCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Q 014464 335 NNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADAT 411 (424)
Q Consensus 335 ~nll~i~~~~s~~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~IL~~Ga~kAr~iA~~T 411 (424)
||+++||+++++. +++++.++|+ ++++++||+.|++.|+++|+|||+||+++++|+++|++||++|++|||++|++|
T Consensus 307 ~nl~~i~~~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t 386 (398)
T PRK12283 307 CPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARET 386 (398)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877 5899999997 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcc
Q 014464 412 LNNVYQAMGFLR 423 (424)
Q Consensus 412 l~~Vr~~~Gl~~ 423 (424)
|++||++|||.+
T Consensus 387 ~~~v~~~~g~~~ 398 (398)
T PRK12283 387 MRDVREAMGLSY 398 (398)
T ss_pred HHHHHHHhCCCC
Confidence 999999999963
No 7
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-90 Score=684.01 Aligned_cols=305 Identities=51% Similarity=0.810 Sum_probs=290.8
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccC-ceEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHc
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLAC 150 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~-~~~~i~IaDlhA~t~~~~~--~~i~~~~~~~~~~~lA~ 150 (424)
.+++||||+||||.+|||||+|+|++|+.+ |+. ++|||+|||+||+|.+.++ +.+++++++++++||||
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~--------q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~ 75 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLL--------QEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAV 75 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHH--------hcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999998 888 5999999999999998766 99999999999999999
Q ss_pred CccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccc
Q 014464 151 GIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGED 230 (424)
Q Consensus 151 GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~D 230 (424)
||||+|++||+||++++|.||+|+|+|.+++|+|+||++||++..+.+ +++++|+|.||+|||||||+|++++||||.|
T Consensus 76 GiDP~k~~if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~D 154 (314)
T COG0180 76 GLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGED 154 (314)
T ss_pred ccCccccEEEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCC
Confidence 999999999999999999999999999999999999999999987765 6899999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHH
Q 014464 231 QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 310 (424)
Q Consensus 231 Q~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~ 310 (424)
|+||+|||||||+|||+.|| .+|++|+++++.. +++|||+|+ +|||||+|+ |+|+|+|+|++|+
T Consensus 155 Q~qHleLtRDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~ 218 (314)
T COG0180 155 QDQHLELTRDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIR 218 (314)
T ss_pred chHHHHHHHHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHH
Confidence 99999999999999999998 6799999999887 899999776 999999985 8999999999999
Q ss_pred HHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014464 311 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 387 (424)
Q Consensus 311 kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s-~~~~eel~~~y~~--l~~~dlK~~Lae~I~~~L~pirer~~~~~ 387 (424)
+||++|+||+...++++++++||+||+|.||.+|+ +++.++++++|++ ++|++||+.|++.|+++|.|||+||+++.
T Consensus 219 kKI~~~~td~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~ 298 (314)
T COG0180 219 KKIKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELR 298 (314)
T ss_pred HHHHHhccCCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996667777889999999999999999 9999999999985 99999999999999999999999999999
Q ss_pred cChHHHHHHHHHHHHH
Q 014464 388 SDSAYLDKVLADGAAK 403 (424)
Q Consensus 388 ~~~~~l~~IL~~Ga~k 403 (424)
+++++++++|.+|++|
T Consensus 299 ~~~~~l~~il~~g~~k 314 (314)
T COG0180 299 EDPAYLDDILRKGAEK 314 (314)
T ss_pred hCHHHHHHHHhccCCC
Confidence 9999999999999874
No 8
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1.8e-89 Score=689.03 Aligned_cols=324 Identities=34% Similarity=0.524 Sum_probs=304.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCcc
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGID 153 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlD 153 (424)
+.+||||+||||.+|||||+|+|++|+++ |+.++++|+||||||+|+ ..+++++++++++++++|+|||||
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~l--------Q~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~d 73 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVAL--------QNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGID 73 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHH--------HhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcC
Confidence 46899999999999999999999999999 887789999999999997 679999999999999999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhccccceEecccchH
Q 014464 154 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 232 (424)
Q Consensus 154 p~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~ 232 (424)
|+|++||+||+|++|+++.|+++|.++++|++|+++||++....+ ++++++|+++||+||||||++|++|+||||.||+
T Consensus 74 p~k~~i~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~ 153 (333)
T PRK12282 74 PAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQL 153 (333)
T ss_pred hhHeEEEECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccH
Confidence 999999999999999999999999999999999999998755443 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHH
Q 014464 233 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 312 (424)
Q Consensus 233 ~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kK 312 (424)
||+|||||+|+|||++||+ ++|+.|+++++. +++|||| +|.+|||||++ |+|+|+|+||+|++|
T Consensus 154 ~h~~laRdiA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kK 217 (333)
T PRK12282 154 PMIEQTREIVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKK 217 (333)
T ss_pred HHHHHHHHHHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHH
Confidence 9999999999999999985 568899988865 5899999 66789999984 699999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014464 313 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 388 (424)
Q Consensus 313 I~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~ 388 (424)
|++|+||+.. +.++++++|++||+++|+++| +++++++++++|. +++++|||+.|+++|+++|+|+|+||+++++
T Consensus 218 I~~A~td~~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~ 296 (333)
T PRK12282 218 VMSMYTDPNH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAK 296 (333)
T ss_pred HHhCcCCCCC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999854 778899999999999999999 5789999999997 6899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 389 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 389 ~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
|+++|++||..|++|||++|++||++||++|||.+
T Consensus 297 ~~~~~~~vl~~G~~ka~~~A~~~~~~v~~~~g~~~ 331 (333)
T PRK12282 297 DPGYVLEILKAGSEKAREVAAQTLSEVKDAMGLNY 331 (333)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999999999964
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=6.8e-88 Score=676.86 Aligned_cols=319 Identities=47% Similarity=0.678 Sum_probs=299.0
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~G 151 (424)
+++++||||+|||.+|||||+|++++|..+ |++++++|+||||||+|++. +++.+++++++++++|+|||
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~--------q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~G 72 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQ--------QFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVG 72 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHH--------hCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 368999999999999999999999999988 89999999999999999866 88999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccch
Q 014464 152 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 231 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ 231 (424)
|||+|++||+||+|++|++|.|+|+|.+|+++|+|+++||++.. .+++++|+|+||+|||||||+|++|+||||.||
T Consensus 73 lDp~k~~if~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ 149 (328)
T TIGR00233 73 LDPKKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQ 149 (328)
T ss_pred cChhheEEEEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeeccccc
Confidence 99999999999999999999999999999999999999998752 257899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 014464 232 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 311 (424)
Q Consensus 232 ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~k 311 (424)
+||+|||||||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+|++|++
T Consensus 150 ~~h~elaRdia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~ 213 (328)
T TIGR00233 150 DQHLELTRDLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKK 213 (328)
T ss_pred HHHHHHHHHHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHH
Confidence 9999999999999999998 56999999998766889999 45 799999974 89999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCccchHHHHHHhcC-----CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 312 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 312 KI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s-----~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
||++|+||+.+.+.|+++++|+++|++.+|++++ ++++++++++|. +++|++||+.||++|+++|+|||+||+
T Consensus 214 KI~~a~td~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~ 293 (328)
T TIGR00233 214 KIRKAATDGGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRA 293 (328)
T ss_pred HHHhcCCCCCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888899999999988888888774 345899999996 579999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014464 385 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421 (424)
Q Consensus 385 ~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl 421 (424)
++++| +|+++|..|+++||++|++||++||++|||
T Consensus 294 ~~~~~--~~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 294 EIAEE--ILDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99987 999999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3.7e-74 Score=566.42 Aligned_cols=274 Identities=46% Similarity=0.754 Sum_probs=258.0
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
++||||+|||.+|||||+|++++|+.+ |+ +++++|+|||+||+|++. +++++++++++++++|+|+|+||
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~l--------Q~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp 72 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWL--------QEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDP 72 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHH--------HhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 589999999999999999999999999 77 899999999999999987 99999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|+.||+||++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||
T Consensus 73 ~k~~i~~qS~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h 150 (280)
T cd00806 73 EKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPH 150 (280)
T ss_pred ccCEEEEcCCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHH
Confidence 999999999999999999999999999999999999998653 368899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+|||||+|+|||++|| ++|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||
T Consensus 151 ~~l~Rdia~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~ 215 (280)
T cd00806 151 LELTRDIARRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIM 215 (280)
T ss_pred HHHHHHHHHHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHH
Confidence 9999999999999998 679999999985 4799999877789999997 499999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHH--HHHh--cCChhhHHHHHHHHHHHh
Q 014464 315 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 375 (424)
Q Consensus 315 kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~--~~y~--~l~~~dlK~~Lae~I~~~ 375 (424)
+|+||+.+++.++.+++|+++|++.||.++++.+.++++ ++|+ +++++++|+.||+.|+++
T Consensus 216 ~a~td~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 216 KAATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred hccCCCCCceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 999999887888999999999999999999988888888 7775 789999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.6e-73 Score=574.16 Aligned_cols=286 Identities=28% Similarity=0.361 Sum_probs=262.4
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~G 151 (424)
+++++|||++|||.+|||||+ ++++|+.+ |+ +++++|+||||||+++ ..+++++++++++++++|+|||
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~-~~~~~~~l--------Q~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G 135 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKM-VFDELKWH--------QEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALG 135 (368)
T ss_pred CCeEEEEccCCCCCccHHHHH-HHHHHHHH--------HhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999997 57789888 77 6999999999999998 5799999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhc------cccceE
Q 014464 152 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFV 225 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~------~~ad~v 225 (424)
|||+|+.||+||++++|.++.|+++|.+++++++|+.+|+ +++++|+++||+|||||||+ |++|+|
T Consensus 136 ~Dp~k~~i~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lv 207 (368)
T PRK12285 136 FDPDKTEIYFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLV 207 (368)
T ss_pred CCccceEEEECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEE
Confidence 9999999999999999999999999999999999998886 46899999999999999999 889999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 014464 226 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 305 (424)
Q Consensus 226 pvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~ 305 (424)
|||+||+||+|||||+|+|||+.|| |++|.+++++ ++|||+ | +|||||+| +|+|+|+|+
T Consensus 208 PvG~DQ~~h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL~-G-~KMSkS~~--~s~I~L~D~ 266 (368)
T PRK12285 208 PVGIDQDPHIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGLT-G-GKMSSSKP--ESAIYLTDD 266 (368)
T ss_pred EeccchHHHHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCCC-C-CcCCCCCC--CCeeeccCC
Confidence 9999999999999999999999998 8999999875 999994 5 69999997 499999999
Q ss_pred HHHHHHHhhhccCCCCCCcccC--CCCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhH
Q 014464 306 KDVIANKIKRCKTDSSAGLEFD--NLERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 378 (424)
Q Consensus 306 ~e~I~kKI~kA~Td~~~~i~~~--~~~rpe~~nll~i~~~~s---~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~p 378 (424)
|++|++||++|+||+..+++++ .+++|++|++++|+.++. ++++++++++|. +++|++||+.|++.|+++|+|
T Consensus 267 p~~I~kKI~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~ 346 (368)
T PRK12285 267 PETVKKKIMKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKE 346 (368)
T ss_pred HHHHHHHHHhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999877654 358899999999999875 578999999997 489999999999999999999
Q ss_pred HHHHHHHHhcChHHHHHHHHHH
Q 014464 379 IQVRYEEIMSDSAYLDKVLADG 400 (424)
Q Consensus 379 irer~~~~~~~~~~l~~IL~~G 400 (424)
+|+||+++.. .|++.+..+
T Consensus 347 ~~er~~~~~~---~~~~~~~~~ 365 (368)
T PRK12285 347 HQEKREEARE---ILEKYLYDG 365 (368)
T ss_pred HHHHHHHHHH---HHHHhhccc
Confidence 9999998864 566665443
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.3e-69 Score=539.68 Aligned_cols=267 Identities=26% Similarity=0.380 Sum_probs=240.5
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA~G 151 (424)
+++++||||+|||.+|||||+ ++++|+.+ |+ +++++|+||||||++++ .+++++++++++++++|+|||
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~l--------q~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G 99 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADL--------QKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALG 99 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHH--------HHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 478999999999999999975 78899999 88 89999999999999986 699999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhH---HHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecc
Q 014464 152 IDNSKASVFVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 228 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~e---l~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG 228 (424)
+||+|++||+||+|++|.+ +.|.|+|.++++++.|+.+++.+ . . ++.++|+|+||+|||||||+|++|+||||
T Consensus 100 ~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG 175 (329)
T PRK08560 100 LDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGG 175 (329)
T ss_pred CChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEec
Confidence 9999999999999998875 44449999999999999988742 2 1 34699999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014464 229 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308 (424)
Q Consensus 229 ~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~ 308 (424)
.||+||++||||+|+||| +.+|.+++.+ +||||+++++|||||+| +|+|+|+|+|++
T Consensus 176 ~DQ~~h~~l~Rdia~~~n------------------~~~p~~l~~~---~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~ 232 (329)
T PRK08560 176 MDQRKIHMLAREVLPKLG------------------YKKPVCIHTP---LLTGLDGGGIKMSKSKP--GSAIFVHDSPEE 232 (329)
T ss_pred hhHHHHHHHHHHhhHhcC------------------CCCceEEEcC---ccCCCCCCCCCCcCCCC--CCeecccCCHHH
Confidence 999999999999999998 3468777754 99999776679999997 599999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC--------------------CCHHHHHHHHh--cCChhhHHH
Q 014464 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKP 366 (424)
Q Consensus 309 I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~--------------------~~~eel~~~y~--~l~~~dlK~ 366 (424)
|++||++|+||+ +.|+.||+++|++++.. +++++++++|. +++|++||+
T Consensus 233 I~~KI~kA~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~ 303 (329)
T PRK08560 233 IRRKIKKAYCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKN 303 (329)
T ss_pred HHHHHHhccCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHH
Confidence 999999999974 46888999999998742 57899999997 478999999
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 014464 367 LLTDALIEHLHPIQVRYEE 385 (424)
Q Consensus 367 ~Lae~I~~~L~pirer~~~ 385 (424)
+||++|+++|+|||++|++
T Consensus 304 ~la~~i~~~l~pir~~~~~ 322 (329)
T PRK08560 304 AVAEYLIEILEPVREYLEE 322 (329)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999984
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.3e-68 Score=540.75 Aligned_cols=268 Identities=24% Similarity=0.369 Sum_probs=237.6
Q ss_pred CCceEEEecCCCCcchhhhhHHHHH--HHHHhcccccccccc-CceEEEEEeccceecCC---CCHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~--~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~ 147 (424)
++++||+||+|||.+|||| |+|+ +|+++ |+ |++++|+||||||++++ .+++++++++++++++|
T Consensus 65 ~~~~v~~G~~PTG~lHLG~--g~i~~~~~~~l--------q~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~ 134 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQ--GILKAINVNKL--------TKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVW 134 (383)
T ss_pred CCCEEEEEECCCCcccccc--hHhHhHHHHHH--------HhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999 4555 78888 77 89999999999999974 59999999999999999
Q ss_pred HHcCccCCceEEEEcCC-cchhhHHHHHHhcc----ccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhcccc
Q 014464 148 LACGIDNSKASVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS 222 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~-v~~~~el~wiL~~~----~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~a 222 (424)
+|+|+||+|++||+||+ +++|++++|++.+. ++++++.|+.+++++.. .++.++|+|+||+||||||++|++
T Consensus 135 ~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~a 211 (383)
T PTZ00126 135 KAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKA 211 (383)
T ss_pred HHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCC
Confidence 99999999999999998 68999999998775 49999999999986432 256799999999999999999999
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
|+||||.||+||++||||+|++||+. ++|..++. ++||||+||++|||||+| +++|+|
T Consensus 212 divpvG~DQ~~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L 269 (383)
T PTZ00126 212 DICQLGMDQRKVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFM 269 (383)
T ss_pred CEEEeCccHHHHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeecC
Confidence 99999999999999999999999852 24554433 699999888899999997 489999
Q ss_pred CCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC--------------------CCCHHHHHHHHh--cCC
Q 014464 303 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NMN 360 (424)
Q Consensus 303 ~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s--------------------~~~~eel~~~y~--~l~ 360 (424)
+|+|++|++|||+|+||+ +.++.||++.|+.++. +.++++++++|. .++
T Consensus 270 ~Dspe~I~kKI~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~ 340 (383)
T PTZ00126 270 EDSEEDVNRKIKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALH 340 (383)
T ss_pred CCCHHHHHHHHHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCC
Confidence 999999999999999964 4567789999988642 258999999997 589
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHH
Q 014464 361 WGTFKPLLTDALIEHLHPIQVRYEE 385 (424)
Q Consensus 361 ~~dlK~~Lae~I~~~L~pirer~~~ 385 (424)
|++||++||++|+++|+|||++|+.
T Consensus 341 p~dlK~~lae~i~~~L~PIRe~~~~ 365 (383)
T PTZ00126 341 PGDLKPALAKYLNLMLQPVRDHFQN 365 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999873
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.1e-65 Score=549.14 Aligned_cols=281 Identities=23% Similarity=0.355 Sum_probs=246.7
Q ss_pred CCceEEEecCCCCcchhhh-hHHHHHHHHHhccccccccccCceEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGn-ylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA 149 (424)
.++++||||||||.+|||| ++++++.|..+ |++++++||||||||+|++ .++++++.++++++++|+|
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~--------q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA 102 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCT--------QAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKA 102 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHH--------hCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999 57788777766 8999999999999999974 3889999999999999999
Q ss_pred cCccCCceEEEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC--CCCccccchhhhHHHHhhhhccccceEe
Q 014464 150 CGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVP 226 (424)
Q Consensus 150 ~GlDp~k~~if~QS~-v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g--~~~~~~g~l~YPvLQAADIl~~~ad~vp 226 (424)
+|+||+|++||+||+ +++|++++|++ .++++++.++.++|++....+ ++++++|+++||+|||||||+|++|+||
T Consensus 103 ~GlDpeK~~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivp 180 (682)
T PTZ00348 103 AGMDMDKVLFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQ 180 (682)
T ss_pred cCCCccceEEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEE
Confidence 999999999999998 89999999999 588999999999998644232 2358999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014464 227 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 306 (424)
Q Consensus 227 vG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~ 306 (424)
||.||+||+||||++|++||+. .+|..+.. ++||||+||++|||||+| +|+|+|+|+|
T Consensus 181 vG~DQ~qh~eLaRdia~~~g~~-----------------~kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dsp 238 (682)
T PTZ00348 181 LGLDQRKVNMLAREYCDLIGRK-----------------LKPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTE 238 (682)
T ss_pred eCccHHHHHHHHHHHHHHhCCC-----------------CCceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCH
Confidence 9999999999999999998742 23443332 699999878789999997 4999999999
Q ss_pred HHHHHHhhhccCCCCC--CcccCCCCCC----ccchHHHHHHhcC-----------C---CCHHHHHHHHh--cCChhhH
Q 014464 307 DVIANKIKRCKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS-----------G---KTKGEVAEECQ--NMNWGTF 364 (424)
Q Consensus 307 e~I~kKI~kA~Td~~~--~i~~~~~~rp----e~~nll~i~~~~s-----------~---~~~eel~~~y~--~l~~~dl 364 (424)
++|++||++|+||+.+ .+...++++| +.||+++||+++. + +++++++++|. +++|+||
T Consensus 239 e~I~kKI~kA~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dl 318 (682)
T PTZ00348 239 EDVARKIRQAYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEAL 318 (682)
T ss_pred HHHHHHHHhCCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHH
Confidence 9999999999999863 3566677888 8899999998873 1 67899999996 5899999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 014464 365 KPLLTDALIEHLHPIQVRYEEI 386 (424)
Q Consensus 365 K~~Lae~I~~~L~pirer~~~~ 386 (424)
|++|+++|+++|+|||++|++.
T Consensus 319 K~~lae~l~~~L~PIRe~~~~~ 340 (682)
T PTZ00348 319 KSCLIDEVNALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999844
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.1e-60 Score=480.54 Aligned_cols=275 Identities=19% Similarity=0.254 Sum_probs=236.8
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc--CceEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA 149 (424)
+++++|+|++|||. |||||+++.+ .+ +|+|+ ++.++|+|||+|+++.. .+++++++++++++++|+|
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~----~~-----~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA 142 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFM----FT-----KYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIA 142 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHH----HH-----HHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999995 9999998654 33 45587 57899999999999974 5999999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhh------cccc
Q 014464 150 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS 222 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl------~~~a 222 (424)
+||||+|+.||.|++ .+.+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||| ++..
T Consensus 143 ~G~dp~kt~I~s~~~--~~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~ 215 (383)
T PLN02486 143 CGFDVERTFIFSDFD--YVGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGG 215 (383)
T ss_pred hCCCCcceEEEeccH--HHhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCC
Confidence 999999999995555 44456554432 5788899998887776 45789999999999999998 4554
Q ss_pred -----ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 223 -----DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 223 -----d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
|+||||.||+||++||||+|+||| +.+|..+++ .++|+|+++.+|||||+| +
T Consensus 216 ~~~~~~lVPvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~--n 272 (383)
T PLN02486 216 KDKLRCLIPCAIDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP--N 272 (383)
T ss_pred CcCCcceeecccchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--C
Confidence 899999999999999999999998 346876654 499999877789999997 4
Q ss_pred ceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCChhhHHHHHHH
Q 014464 298 SRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTD 370 (424)
Q Consensus 298 s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~--~~~~rpe~~nll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae 370 (424)
|+|+|+|+|++|++||++ |+||++.+++. ..+++|+++++++|+.+|. ++++++++++|. +++|++||+.|++
T Consensus 273 saI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae 352 (383)
T PLN02486 273 SAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIE 352 (383)
T ss_pred CeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 899999999999999999 99999887665 3468899999999999995 467999999996 5899999999999
Q ss_pred HHHHhhhHHHHHHHHHh
Q 014464 371 ALIEHLHPIQVRYEEIM 387 (424)
Q Consensus 371 ~I~~~L~pirer~~~~~ 387 (424)
.|+++|+|+|++++++.
T Consensus 353 ~i~~~l~~~qerr~~~~ 369 (383)
T PLN02486 353 VLTEIVERHQRARAAVT 369 (383)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999876
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=1.5e-60 Score=471.56 Aligned_cols=275 Identities=35% Similarity=0.529 Sum_probs=244.8
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEEEeccceecCCC---CHHHHHHHHHHHHHH--H
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--Y 147 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~~~--~ 147 (424)
+++++|+||+|||.+||| |++++.+|+++ | .|++++|+||||||++++. +++.++.++.+++.. |
T Consensus 4 ~~~~~y~G~~PTg~lHlG-~l~~~~~~~~l--------q~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLG-HLVPIMKLIWL--------QKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAI 74 (292)
T ss_dssp SSEEEEEEEESSSS-BHH-HHHHHHHHHHH--------HHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeECCCCcccch-HHHHHHHHHHH--------HhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHH
Confidence 578999999999999999 56788999998 7 5899999999999999854 599999999999999 9
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhccccceEe
Q 014464 148 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVP 226 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~~ad~vp 226 (424)
+|+|+||+++.||+||+|+++.++.|.+.+.++.++++|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||
T Consensus 75 la~g~d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~ 154 (292)
T PF00579_consen 75 LALGLDPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVP 154 (292)
T ss_dssp HHTTSHTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEE
T ss_pred HHhccCccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeecccccc
Confidence 999999999999999999999999999999999999999999998666655 3588999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCH
Q 014464 227 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 306 (424)
Q Consensus 227 vG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~ 306 (424)
||.||++|++++||+|+|+|++. .|++|..++++ ++|+| +|.+|||||+++ ++|+|+|++
T Consensus 155 ~G~DQ~~~~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~ 214 (292)
T PF00579_consen 155 GGIDQRGHIELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSP 214 (292)
T ss_dssp EEGGGHHHHHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTH
T ss_pred ccchHHHHHHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccc
Confidence 99999999999999999999762 37899999886 89998 676799999984 799999999
Q ss_pred HHHHHHhhhccCCCCCCcccCCCCCCccch-HHHHHHhcCC----CCHHHHHHHHh--cCChhhHHHHHHHHHHHhhh
Q 014464 307 DVIANKIKRCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 377 (424)
Q Consensus 307 e~I~kKI~kA~Td~~~~i~~~~~~rpe~~n-ll~i~~~~s~----~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~ 377 (424)
++|++||++|+|++...+......+|.+++ ++.++..+.+ .+++++.++|. .+|++++|++++++++++|+
T Consensus 215 ~~i~~Ki~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 215 EEIRKKIKKAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HHHHHHHHHSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 999999999999998765555567788888 8888877643 35799999997 47999999999999999885
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=2e-58 Score=453.15 Aligned_cols=248 Identities=26% Similarity=0.398 Sum_probs=221.7
Q ss_pred eEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCC----------CHHHHHHHHHHHH
Q 014464 77 RIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETA 144 (424)
Q Consensus 77 ~i~sGi~PTG-~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~----------~~~~i~~~~~~~~ 144 (424)
.+|+||+||| .+|||||+| +++|+.+ |+ +++++++|||+||++++. +++++++++.+++
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~l--------q~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~ 71 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRF--------QHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIA 71 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHH--------HHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHH
Confidence 4899999999 699999998 8899988 88 899999999999999743 7999999999999
Q ss_pred HHHHHcCcc--CCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhc
Q 014464 145 AIYLACGID--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 219 (424)
Q Consensus 145 ~~~lA~GlD--p~k~~if~QS~v~---~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~ 219 (424)
++|+|+|+| |+|++||.||+|+ ++.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+||||||++
T Consensus 72 ~~~~a~g~d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~ 147 (273)
T cd00395 72 AQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLL 147 (273)
T ss_pred HHHHHhcCcCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHH
Confidence 999999999 9999999999998 8999999999999999999999999764 1 56899999999999999999
Q ss_pred ccc----ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014464 220 YQS----DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 295 (424)
Q Consensus 220 ~~a----d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 295 (424)
+++ |+||||.||+||++++||+|+|||. |+.|..++.+ +|||| +| .|||||+++
T Consensus 148 l~~~~~~~~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G-~KMSKS~~~ 205 (273)
T cd00395 148 LNTTEGCDIQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DG-PKFGKSESG 205 (273)
T ss_pred HhcccCCcEEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CC-CcCCCCCCC
Confidence 988 9999999999999999999999982 6678888874 99999 56 499999864
Q ss_pred CCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHH----HHhcCChhhHHHHHHHH
Q 014464 296 DQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDA 371 (424)
Q Consensus 296 ~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~----~y~~l~~~dlK~~Lae~ 371 (424)
.-..|+++|+|++|++||++|+ .++++.|+++|++.+.+||++ .|++.+++++|+.||+.
T Consensus 206 ~i~l~~~~dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~ 269 (273)
T cd00395 206 PKWLDTEKTSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEE 269 (273)
T ss_pred CccccccCCCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 2222447999999999999998 268999999999888888877 55667889999999999
Q ss_pred HHHh
Q 014464 372 LIEH 375 (424)
Q Consensus 372 I~~~ 375 (424)
|+++
T Consensus 270 i~~~ 273 (273)
T cd00395 270 VTKT 273 (273)
T ss_pred HHhC
Confidence 9863
No 18
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.1e-58 Score=454.27 Aligned_cols=249 Identities=23% Similarity=0.272 Sum_probs=220.7
Q ss_pred ceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C---------CCHHHHHHHHHHH
Q 014464 76 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRET 143 (424)
Q Consensus 76 ~~i~sGi~PTG-~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~ 143 (424)
.++|+||+||| .+|||||++++ +|+.+ |+ +++++|+|||+||+++ + .++++++++++++
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~~-~~~~l--------q~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~ 71 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPLM-KLRDF--------QQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYY 71 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHHH-HHHHH--------HHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHH
Confidence 37999999999 79999999754 89888 77 8999999999999997 5 5899999999999
Q ss_pred HHHHHHcCcc--CCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhh
Q 014464 144 AAIYLACGID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 217 (424)
Q Consensus 144 ~~~~lA~GlD--p~k~~if~QS~v~~~~el~wi----L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADI 217 (424)
+++|+|+|+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||
T Consensus 72 ~~~~~a~g~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi 147 (269)
T cd00805 72 KKQLKAILDFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDF 147 (269)
T ss_pred HHHHHHHHccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhH
Confidence 9999999997 999999999999998 7787 9999999999999999976532 2678999999999999999
Q ss_pred hccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 218 LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
+++++|+||||.||++|++++||+|+|||+ ..|..+.. ++||+| +| +|||||+++
T Consensus 148 ~~l~~~l~~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~-- 202 (269)
T cd00805 148 VYLDVDLQLGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN-- 202 (269)
T ss_pred HHHhCCeeEecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--
Confidence 999999999999999999999999999973 23444543 489999 56 599999974
Q ss_pred ce-eecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHHHHHHHHHh
Q 014464 298 SR-INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 375 (424)
Q Consensus 298 s~-I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~Lae~I~~~ 375 (424)
+. |++.|+|++|++||++|+|| ++.+++.++.++++++++|++++|. +-.++++|+.||++|++.
T Consensus 203 ~~~i~l~dsp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 203 AIWDPVLDSPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred cccccCCCCHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 34 79999999999999999996 4678888888888899999999998 323999999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=2.6e-50 Score=415.32 Aligned_cols=258 Identities=20% Similarity=0.231 Sum_probs=219.3
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~ 141 (424)
.++++|+||+|||. +|||||+ ++.+|..+ |+ |++++++||||||+++ |. +.+.+++++.
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv-~l~~l~~l--------Q~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~ 102 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLV-PLLKLRRF--------QDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAE 102 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHH-HHHHHHHH--------HHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHH
Confidence 46899999999995 9999999 57789888 77 7999999999999996 42 5677888887
Q ss_pred HHHHHHHHcCccCCc--eEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhh
Q 014464 142 ETAAIYLACGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 216 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k--~~if~QS~v~~~~el~wiL~---~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAAD 216 (424)
++ ...+|+|+||++ +.||+||+|+++.++.|+|. +.+++++|.++.+||++... ++++++|+|+||+|||||
T Consensus 103 ~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D 179 (408)
T PRK05912 103 TI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYD 179 (408)
T ss_pred HH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhh
Confidence 65 445699999999 99999999999999999877 88888888888888865421 257899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014464 217 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 292 (424)
Q Consensus 217 Il~~----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS 292 (424)
|+++ ++|++|||.||++|++++||+|+|||.. .+..+.. ++|+++ +| +|||||
T Consensus 180 ~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS 236 (408)
T PRK05912 180 FVALNKRYGCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKS 236 (408)
T ss_pred HHHHhccCCCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCC
Confidence 9999 9999999999999999999999998831 1223322 589998 67 799999
Q ss_pred CCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHHH
Q 014464 293 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLL 368 (424)
Q Consensus 293 ~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~L 368 (424)
. +|+|||+| +|+++++||+++ + ++++.+++.+|.+++.+++++++++|. +-+++++|+.|
T Consensus 237 ~---~naI~L~d~~tsp~~i~qki~~~-~------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~L 300 (408)
T PRK05912 237 E---GNAVWLDEEKTSPYEMYQKWMNI-S------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVL 300 (408)
T ss_pred C---CCceeCCCCCCCHHHHHHHHhcC-C------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHH
Confidence 7 58999999 999999999996 2 235677888887778889999999995 55999999999
Q ss_pred HHHHHHhhhHHHHH
Q 014464 369 TDALIEHLHPIQVR 382 (424)
Q Consensus 369 ae~I~~~L~pirer 382 (424)
|+.|+++++...+.
T Consensus 301 A~~v~~~lhg~~~~ 314 (408)
T PRK05912 301 AEEITALVHGEEAA 314 (408)
T ss_pred HHHHHHHHCCHHHH
Confidence 99999999987543
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-47 Score=393.03 Aligned_cols=259 Identities=17% Similarity=0.207 Sum_probs=214.2
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C---------CCHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~ 141 (424)
+++++|+||+|||. +||||++ ++.+|..+ |+ |++++++|||+||+++ | .+.+++++|+.
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv-~l~~l~~l--------q~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~ 102 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLV-PLMKLKRF--------QDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAK 102 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHH-HHHHHHHH--------HHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHH
Confidence 47899999999995 9999975 56678877 66 7999999999999986 3 25678999999
Q ss_pred HHHHHHHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhcc
Q 014464 142 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY 220 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~ 220 (424)
++.+.+.+ |+||+|++||+||+|+++.++.|+|.++.+...++||.++++...+.. ++++++|+|+||+|||||++++
T Consensus 103 ~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l 181 (410)
T PRK13354 103 TYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHL 181 (410)
T ss_pred HHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHH
Confidence 88888766 999999999999999998888888766666666667777666554543 3578999999999999999999
Q ss_pred ----ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014464 221 ----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 221 ----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
++|++|||.||++|++++||+|+|+|.. .|..+.. |.|+++ ||+ |||||.
T Consensus 182 ~~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~--- 235 (410)
T PRK13354 182 NRKEDVDLQIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA--- 235 (410)
T ss_pred hccCCCCEEEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---
Confidence 9999999999999999999999999842 2334433 589998 775 999997
Q ss_pred CceeecCCC---HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---CCCHHHHHHHHhc-CChhhHHHHHH
Q 014464 297 QSRINLLDP---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---GKTKGEVAEECQN-MNWGTFKPLLT 369 (424)
Q Consensus 297 ~s~I~L~D~---~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s---~~~~eel~~~y~~-l~~~dlK~~La 369 (424)
+|+|||+|+ |+++++||+++. | ++++.|+.+|+ .+++++++++|.. .+++++|+.||
T Consensus 236 ~naI~L~d~~tsp~~i~qki~~~~-D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA 299 (410)
T PRK13354 236 GGAIWLDPEKTSPYEFYQFWMNID-D---------------RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLA 299 (410)
T ss_pred CCceeccCCCCCHHHHHHHHHcCC-h---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 479999999 999999999862 1 34567777665 5688889999974 46999999999
Q ss_pred HHHHHhhhHHHHHHH
Q 014464 370 DALIEHLHPIQVRYE 384 (424)
Q Consensus 370 e~I~~~L~pirer~~ 384 (424)
+.|+++++..++..+
T Consensus 300 ~~v~~~vhg~~~~~~ 314 (410)
T PRK13354 300 EEITKFVHGEEAAEE 314 (410)
T ss_pred HHHHHHHCCHHHHHH
Confidence 999999999876443
No 21
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-47 Score=365.86 Aligned_cols=268 Identities=24% Similarity=0.255 Sum_probs=218.6
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCC--CCHHHHHHHHHHHHHHHH-H-
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL-A- 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~l-A- 149 (424)
+.+.+|||+.|||+||+|.++.+ .++.++ +..||+|.|++|||||++++ ..++.+..++.|+-..+. |
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm-~kiadf-------lkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l 104 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPM-MKIADF-------LKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAAL 104 (360)
T ss_pred cCceeeecCCCCCCcceeeeeeh-hHHHHH-------HhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999987644 355554 57899999999999999985 466666666665544433 3
Q ss_pred --cCccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccce
Q 014464 150 --CGIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 224 (424)
Q Consensus 150 --~GlDp~k~~if~QS~v~---~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~ 224 (424)
.+++.|+..|...|++. +.+-..++++..++-..+++. +.. ..++ .++..++.++||.|||+|++++++|.
T Consensus 105 ~~~nv~lEkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~a-gae-vvkq--ve~plls~llYP~MQalDe~~L~vD~ 180 (360)
T KOG2144|consen 105 GSINVPLEKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKA-GAE-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDA 180 (360)
T ss_pred hhcCCcHHHHhhhcccccccCccchhhHHHHHhhccHhHHHHh-hhh-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhH
Confidence 35667788888888874 345666777777765555444 332 1222 36889999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014464 225 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 304 (424)
Q Consensus 225 vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 304 (424)
+++|.|||..+.+||+++..++ +++|.+++++ +||||++| +|||||+|+ |.|+|.|
T Consensus 181 qfgGvDQRKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD 236 (360)
T KOG2144|consen 181 QFGGVDQRKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLD 236 (360)
T ss_pred HhcCccHHHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--ccccccc
Confidence 9999999999999999999987 3568788775 99999754 899999985 9999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc-----------------------CCCCHHHHHHHHh--cC
Q 014464 305 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NM 359 (424)
Q Consensus 305 ~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~-----------------------s~~~~eel~~~y~--~l 359 (424)
+|++|.+||++||| +|+..+.|+++++.+++ +++++||++++|. ++
T Consensus 237 ~~~~V~kKI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~l 307 (360)
T KOG2144|consen 237 EPADVNKKIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGEL 307 (360)
T ss_pred CHHHHHHHHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCc
Confidence 99999999999999 55677889999988864 4568899999997 69
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014464 360 NWGTFKPLLTDALIEHLHPIQVRYEEI 386 (424)
Q Consensus 360 ~~~dlK~~Lae~I~~~L~pirer~~~~ 386 (424)
||+|||+.|+.+|+++|+|||+.++..
T Consensus 308 hPgDLK~~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 308 HPGDLKKGLEKALNELLQPIREEFSNW 334 (360)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988753
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.6e-43 Score=358.24 Aligned_cols=242 Identities=21% Similarity=0.253 Sum_probs=193.1
Q ss_pred CceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHHHH
Q 014464 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRE 142 (424)
Q Consensus 75 ~~~i~sGi~PTG-~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~ 142 (424)
++++|+||+||| .+|||||++ +.+|..+ |+ |++++++|||+||+++ |. +.+++++|+ +
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~l--------q~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~ 99 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDF--------QQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-E 99 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHH--------HHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-H
Confidence 689999999999 799999996 6678888 66 7999999999999997 43 345555566 6
Q ss_pred HHHHHHHcCccCCceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhc
Q 014464 143 TAAIYLACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 219 (424)
Q Consensus 143 ~~~~~lA~GlDp~k~~if~QS~v~~---~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~ 219 (424)
+++.++|+|+||+++.|++||+|.. +.++.|.+++.+++++|.|..+++... . +++++++|+||+|||||+++
T Consensus 100 ~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~--~--~~is~~ef~YpllQa~D~~~ 175 (377)
T TIGR00234 100 NIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL--E--RGISLSEFIYPLLQAYDFVY 175 (377)
T ss_pred HHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH--h--cCCCchhhhhHHHHHHHHHH
Confidence 7888999999999999999999864 577888899999999999999998532 2 45899999999999999999
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC-----
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP----- 294 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p----- 294 (424)
+++|++|||.||++|++.+|++|+++|.+. .|.+|.+++++ + || .|||||..
T Consensus 176 l~~di~~gG~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~~-------~-dg-~KmgKS~~~~i~l 232 (377)
T TIGR00234 176 LNVDLQIGGSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLTP-------A-DG-EKMGKSGGGAVSL 232 (377)
T ss_pred HcCCeeEecchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeecC-------C-CC-CCccCCCCCcccC
Confidence 999999999999999999999999998543 26667666544 3 44 46666642
Q ss_pred -CC--CceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHH
Q 014464 295 -SD--QSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDA 371 (424)
Q Consensus 295 -~~--~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~ 371 (424)
.+ .++|++.|+||++.+||++++|+... ++++++.+ .++-++.+.|+.+|..
T Consensus 233 ~~~~~~~~i~~~d~~D~~~~Ki~k~~t~~~~------------------------~ei~~l~~-~~~~~~~~~q~~la~e 287 (377)
T TIGR00234 233 DEGKYDFYQFWINTPDEDVKKILKLFTFLGL------------------------EEIEALVE-LKGPSPREVKENLAKE 287 (377)
T ss_pred CccHhhhhhhhcCCcHHHHHHHHHHcCCCcH------------------------HHHHHHHH-hcccCHHHHHHHHHHH
Confidence 11 37888888899999999999996421 23333422 2345677788888887
Q ss_pred HHHhhhH
Q 014464 372 LIEHLHP 378 (424)
Q Consensus 372 I~~~L~p 378 (424)
|.+.++.
T Consensus 288 i~~~vhg 294 (377)
T TIGR00234 288 ITKYVHG 294 (377)
T ss_pred HHHHhcC
Confidence 7777764
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-42 Score=332.23 Aligned_cols=276 Identities=20% Similarity=0.287 Sum_probs=239.9
Q ss_pred CCceEEEecCCC-CcchhhhhHHHHHHHHHhccccccccccCce--EEEEEeccceecC-CCCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQNSYE--TLFFIVDLHAITL-PYDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai~~~~~l~~~~~~~~Q~~~~--~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA 149 (424)
+|+++|||..|| +.|||||.+ |++.. ||+|+.++ ++|.+.|.+.++- .-..+.....+++++.+++|
T Consensus 84 kpFyLYTGRGpSS~smHlGHli----PFift-----KwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia 154 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLI----PFIFT-----KWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIA 154 (397)
T ss_pred CceEEEeCCCCCccccccccch----hHHHH-----HHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEE
Confidence 479999999999 569999987 67777 89999765 6999999999986 34789999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhccc-------
Q 014464 150 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ------- 221 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~~------- 221 (424)
+|+||.|+.||.+.++..-. ..+-++-++.++.++++....+| +++.++|.+.+|..|||..+...
T Consensus 155 ~GFDp~kTfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~ 228 (397)
T KOG2145|consen 155 VGFDPKKTFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGG 228 (397)
T ss_pred eccCCcceEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCC
Confidence 99999999999888864310 01123445678888887777777 67889999999999999998741
Q ss_pred ----cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 222 ----SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 222 ----ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
+|++|+.+||+|++++|||+|+|++ +++|..+++. ++|.|++.+.|||.|+|+
T Consensus 229 ~~~~~CLiPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdpn-- 285 (397)
T KOG2145|consen 229 RDDIPCLIPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDPN-- 285 (397)
T ss_pred CcCCceeceeeccCChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCCC--
Confidence 6899999999999999999999965 6899888765 899999989999999985
Q ss_pred ceeecCCCHHHHHHHhhh-ccCCCCCCcccCCC--CCCccchHHHHHHhc--CCCCHHHHHHHHh--cCChhhHHHHHHH
Q 014464 298 SRINLLDPKDVIANKIKR-CKTDSSAGLEFDNL--ERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTD 370 (424)
Q Consensus 298 s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~~~~--~rpe~~nll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~Lae 370 (424)
++|||+|++++|++||.+ |+++++.+++.+++ ++|+|+.-+.|+++| ++..+|++..+|. ++..||+|+.+.+
T Consensus 286 s~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ie 365 (397)
T KOG2145|consen 286 SAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIE 365 (397)
T ss_pred ceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHH
Confidence 999999999999999986 99999999998765 899999999999988 3457899999996 6999999999999
Q ss_pred HHHHhhhHHHHHHHHHh
Q 014464 371 ALIEHLHPIQVRYEEIM 387 (424)
Q Consensus 371 ~I~~~L~pirer~~~~~ 387 (424)
.|.+++..+|+++.++.
T Consensus 366 vLq~~V~~hQa~Rk~Vt 382 (397)
T KOG2145|consen 366 VLQEFVSRHQAARKEVT 382 (397)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999999876
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.3e-40 Score=354.72 Aligned_cols=228 Identities=14% Similarity=0.185 Sum_probs=198.2
Q ss_pred ccCceEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCcc-hhhHHHHH----HhccccHHH
Q 014464 112 QNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGW 183 (424)
Q Consensus 112 Q~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS~v~-~~~el~wi----L~~~~~v~~ 183 (424)
..|++++|++|||||++++ +++++|++.++|+.+.|.|+|+|++ +.|.|+||.. .+...||. ++..+++.|
T Consensus 405 ~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r 483 (682)
T PTZ00348 405 HSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSH 483 (682)
T ss_pred cCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHH
Confidence 4589999999999999984 6999999999999999999999999 9999999964 34657887 568888998
Q ss_pred HhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 014464 184 LNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 263 (424)
Q Consensus 184 l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~ 263 (424)
+.|+.. ++..++|.++||+||+|||+++++|++.+|+|||..++||||++++.+
T Consensus 484 ~~r~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~----------------- 537 (682)
T PTZ00348 484 VEELYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI----------------- 537 (682)
T ss_pred HHHHhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc-----------------
Confidence 888752 256699999999999999999999999999999999999999988522
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHh
Q 014464 264 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL 343 (424)
Q Consensus 264 ~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~ 343 (424)
.|.+++. .++|+|..|..+|++|++ +|+|+|.|++++|++||++|||. |+ .+.||+++|.++
T Consensus 538 ---~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cp---------p~-~~~Npvl~~~~y 599 (682)
T PTZ00348 538 ---ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSA---------PN-EEANPVISVAQH 599 (682)
T ss_pred ---cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCC---------CC-CCCCcHHHHHHH
Confidence 2333433 489999888889999876 69999999999999999999994 32 356999999987
Q ss_pred c-------------------CCCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 344 I-------------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 344 ~-------------------s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
+ ++.++|||+++|. .+||.|||.+++++|+++|+|+|++++
T Consensus 600 ~~~~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 600 LLAQQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred HhcCCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 3458999999997 699999999999999999999999985
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-34 Score=296.79 Aligned_cols=271 Identities=21% Similarity=0.231 Sum_probs=206.1
Q ss_pred CceEEEecCCCC-cchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C-CCHHHHHHHHH----HHHHH
Q 014464 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAAI 146 (424)
Q Consensus 75 ~~~i~sGi~PTG-~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~-~~~~~i~~~~~----~~~~~ 146 (424)
+.++|+|++||| .+||||+++ |.++.+| |+ |++++++|||+||+++ | +..++.+..+. ++++.
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~-l~kL~~f--------Q~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~ 102 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVP-LMKLRRF--------QDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAET 102 (401)
T ss_pred CceEEEeeCCCCCccchhhHHH-HHHHHHH--------HHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHH
Confidence 789999999999 799999985 4467777 66 8999999999999997 4 56677776664 33333
Q ss_pred H-HHcCccCC-ceEEEEcCCcchh---hHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccc
Q 014464 147 Y-LACGIDNS-KASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 221 (424)
Q Consensus 147 ~-lA~GlDp~-k~~if~QS~v~~~---~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ 221 (424)
+ .++|.+++ ++.|..+|+|... .+....++..++++++.+..+++. +...+.++++.+|+||+|||+|+++++
T Consensus 103 i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~--R~~~~~~is~~Ef~YpLmQayD~~~L~ 180 (401)
T COG0162 103 IKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKK--RLEREQGISFTEFNYPLLQAYDFVYLN 180 (401)
T ss_pred HHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHH--HhccCCCCchhhhhhHHHHHHHHHHHc
Confidence 3 46787777 9999999999654 444444678999999999999884 333235799999999999999999999
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC------
Q 014464 222 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS------ 295 (424)
Q Consensus 222 ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~------ 295 (424)
.|++.+|.|||.++.++||+++|++ +++|.+++.| .|+++ ||. |||||..+
T Consensus 181 ~dlq~GG~DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~~a~~~~s 237 (401)
T COG0162 181 KDLQLGGSDQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEGGAVWLDS 237 (401)
T ss_pred cchhcCChHHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCCCceEccC
Confidence 9999999999999999999999965 3456677665 99998 775 88887642
Q ss_pred -CCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHH---------------------hcCC-----CC
Q 014464 296 -DQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ---------------------LISG-----KT 348 (424)
Q Consensus 296 -~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~---------------------~~s~-----~~ 348 (424)
+.|.|.+.|.++.|..|++.+||.....+. .+++..|.+ .+.+ +.
T Consensus 238 ~~~Sp~~~yq~~~~i~D~~~~~~~~~~t~l~--------~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a 309 (401)
T COG0162 238 EKTSPYDFYQYWMNIEDADVKRFLKLLTFLS--------LEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAA 309 (401)
T ss_pred CCCCcHhhhhcHhcCcHHHHHHHHHHhCcCC--------hHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHH
Confidence 235777778888999999999986542221 122222222 1222 24
Q ss_pred HHHHHHHHh-----cCChhhHHH-----HHHHHHHHhhhHHHHHHHHHh
Q 014464 349 KGEVAEECQ-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIM 387 (424)
Q Consensus 349 ~eel~~~y~-----~l~~~dlK~-----~Lae~I~~~L~pirer~~~~~ 387 (424)
.++.+..|. ++++.|||. .++..++..|.|.|...++..
T Consensus 310 ~~~~~~~F~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 310 EEEFEKLFSEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred HHHHHHHHhcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 456666674 578999999 888888888999988777654
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=8.6e-18 Score=168.50 Aligned_cols=257 Identities=18% Similarity=0.249 Sum_probs=164.9
Q ss_pred CceEEEecCCCCc-chhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CC---------CHHHHHHHHHHH
Q 014464 75 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PY---------DTQQLSKATRET 143 (424)
Q Consensus 75 ~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~ 143 (424)
|.+||.|++||.. +|+||.++.| +++.+| +.|++++-+|++.+|... |. +.+.++.|++.+
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfq-------r~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I 134 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQ-------RAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSI 134 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHH-------HcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHH
Confidence 6899999999986 9999998654 777772 558999999999999986 31 223444444332
Q ss_pred HHHH----------HHcCccCCceEEEEcCCcchhhHHHHHH---hccccHHHHhhhhhHHHHhHhhCCCCccccchhhh
Q 014464 144 AAIY----------LACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYP 210 (424)
Q Consensus 144 ~~~~----------lA~GlDp~k~~if~QS~v~~~~el~wiL---~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YP 210 (424)
...+ .-+|..-.+-+|+.+++|.+...+.=.| +.+..||.|.++-+.+. +-+..+..++.+|+|.
T Consensus 135 ~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~--RLes~~GlSftEFtYQ 212 (467)
T KOG2623|consen 135 TQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKS--RLESPNGLSFTEFTYQ 212 (467)
T ss_pred HHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHH--hhcCCCCCcHHHHHHH
Confidence 2222 2345554678899999986543332223 34455555555555443 2222467899999999
Q ss_pred HHHHhhhhc----cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC
Q 014464 211 VLMASDILL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL 286 (424)
Q Consensus 211 vLQAADIl~----~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~ 286 (424)
+|||.|.++ |.++++.+|.||+.|+...-|+.+|+-..-+ .+|-+..++++. .+|
T Consensus 213 ~lQAYDfy~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PLlTs--------stG- 271 (467)
T KOG2623|consen 213 LLQAYDFYHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPLLTS--------STG- 271 (467)
T ss_pred HHHHHhHHHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeeeEec--------Ccc-
Confidence 999999988 4799999999999999999999988753100 223333334433 256
Q ss_pred CccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChh
Q 014464 287 SKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWG 362 (424)
Q Consensus 287 ~KMSKS~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~ 362 (424)
.|..||. +|+|||+- +|-.+++=.-++..| ++.-++.++.++.-+++++|.++-. +-...
T Consensus 272 ~KlGKSa---GnAvWLdp~~tspy~lYQfF~~~pDd-------------~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r 335 (467)
T KOG2623|consen 272 AKLGKSA---GNAVWLDPSKTSPYHLYQFFASLPDD-------------DVEKFLKLFTFLPLEEIKQILEEHRKEPSQR 335 (467)
T ss_pred hhhccCC---CceEEecCccCCcHHHHHHHHhCchh-------------HHHHHHHHHhcCCHHHHHHHHHHHhcChhhh
Confidence 6999997 68999964 445555544444321 2233444444333334444433332 23333
Q ss_pred hHHHHHHHHHHHhhhH
Q 014464 363 TFKPLLTDALIEHLHP 378 (424)
Q Consensus 363 dlK~~Lae~I~~~L~p 378 (424)
-.-+.||+.|.++++.
T Consensus 336 ~aQ~~LA~eVTr~VHG 351 (467)
T KOG2623|consen 336 IAQKLLAAEVTRMVHG 351 (467)
T ss_pred hHHHHHHHHHHHHHcc
Confidence 4566677777777665
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.58 E-value=7.4e-15 Score=142.01 Aligned_cols=172 Identities=19% Similarity=0.195 Sum_probs=120.4
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceE----
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 158 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~---- 158 (424)
.|||.+||||+.+++.+|+..+ +.+...++-|.| |++ .....+....+.+++..+||++++..
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar-------~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g 75 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFAR-------KHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGG 75 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCC
Confidence 5889999999999999999881 335556666888 433 23344566677778888999999843
Q ss_pred ---EEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHHH
Q 014464 159 ---VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 235 (424)
Q Consensus 159 ---if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~hi 235 (424)
+|.||+-. ..|++...+.-.+. =|..+|++.++.|....+.++|+.|.|+..+.
T Consensus 76 ~~~~~~QS~r~---------------------~~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t 132 (239)
T cd00808 76 PYGPYRQSERL---------------------EIYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSST 132 (239)
T ss_pred CCCCEeeeCCH---------------------HHHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhCh
Confidence 89999732 22222211110000 28899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHH
Q 014464 236 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIAN 311 (424)
Q Consensus 236 eLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----D~~e~I~k 311 (424)
...+.+.+.|| ++.|...+. +++++. +| .||||+..+ .+|.-. -+|+.|..
T Consensus 133 ~~q~~l~~aLg------------------~~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~ 187 (239)
T cd00808 133 PKQILLYEALG------------------WEPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLN 187 (239)
T ss_pred HHHHHHHHHcC------------------CCCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHH
Confidence 99999999976 455654433 466776 55 699999742 222211 24666666
Q ss_pred Hhhh
Q 014464 312 KIKR 315 (424)
Q Consensus 312 KI~k 315 (424)
-+..
T Consensus 188 ~l~~ 191 (239)
T cd00808 188 YLAL 191 (239)
T ss_pred HHHH
Confidence 5554
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.45 E-value=4.2e-13 Score=119.37 Aligned_cols=63 Identities=44% Similarity=0.513 Sum_probs=53.7
Q ss_pred hhHHHHhhhhcccc---ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014464 209 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 285 (424)
Q Consensus 209 YPvLQAADIl~~~a---d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg 285 (424)
||+.|+||++.+.. |++++|.||.+|++..++++++++ + ...|..+..+ +|++. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~---~--------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG---G--------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhC---C--------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 999999999999999999999976 1 2357777654 78776 55
Q ss_pred CCccccCC
Q 014464 286 LSKMSKSA 293 (424)
Q Consensus 286 ~~KMSKS~ 293 (424)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.82 E-value=2.7e-08 Score=96.01 Aligned_cols=169 Identities=21% Similarity=0.229 Sum_probs=113.7
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.+||||...++-+|... .|.+.+.++=|=|.-. .....+....+..++..+||+.+.- ++.|
T Consensus 9 sPtG~lHlG~~r~al~n~l~A-------r~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~~-~~~Q 74 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFA-------RKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDEG-PYRQ 74 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHH-------HHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCCC-eeeh
Confidence 588999999999999999887 1446666655655421 1233455667778888899998853 7889
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHHHHHHHHHH
Q 014464 163 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 242 (424)
Q Consensus 163 S~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~hieLaRdia 242 (424)
|+-.+.-+. +-++-...| |..+|=.--+.|=...+.++|.-|.|+..+-..-+.|+
T Consensus 75 S~r~~~y~~------------------~~~~L~~~g------g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~ 130 (230)
T cd00418 75 SDRFDLYRA------------------YAEELIKKG------GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLY 130 (230)
T ss_pred hcCHHHHHH------------------HHHHHHHcC------CCccccccccccccccCCCEEEECHhhhhchHHHHHHH
Confidence 985332110 111111111 55666666677777889999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC----CCHHHHHHHhh
Q 014464 243 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 314 (424)
Q Consensus 243 ~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~----D~~e~I~kKI~ 314 (424)
+.++ ++.|...+.+ +|.+. +| +||||++.+ .+|.=. -.|+.|..-+.
T Consensus 131 ~~Lg------------------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 131 EALG------------------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred HHcC------------------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 9875 5678776654 77775 55 699999853 222111 34555655554
No 30
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.53 E-value=9.6e-07 Score=90.32 Aligned_cols=86 Identities=24% Similarity=0.326 Sum_probs=55.9
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceE-EEEEeccce------------------ec--C-C-
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET-LFFIVDLHA------------------IT--L-P- 130 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~-~i~IaDlhA------------------~t--~-~- 130 (424)
+..|=||+-|||.+||||+...+.. ++ +.+++. .|+++ +++.+|.|- .. . +
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~--D~---i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~ 94 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITA--DL---VARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPD 94 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHH--HH---HHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchh
Confidence 4677889999999999998765542 21 123333 36776 677999992 11 1 0
Q ss_pred --C-CHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCcchh
Q 014464 131 --Y-DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 168 (424)
Q Consensus 131 --~-~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS~v~~~ 168 (424)
+ .++-..++.......+-.+|++.+ +|.+++...+
T Consensus 95 p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~ 132 (353)
T cd00674 95 PFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKS 132 (353)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhh
Confidence 0 234455566667777778999875 7888875443
No 31
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.49 E-value=8e-07 Score=95.11 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=48.1
Q ss_pred cccceEecccchHH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 220 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~-hieLaRdia~-r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
++.|+.|.|.||.. +..++++|++ .++ .+.|..+... +|..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC---C
Confidence 46999999999999 9999999999 644 3557665433 55443 35 7999997 5
Q ss_pred ceeecCC-----CHHHHH
Q 014464 298 SRINLLD-----PKDVIA 310 (424)
Q Consensus 298 s~I~L~D-----~~e~I~ 310 (424)
|.|.+.| +|+.++
T Consensus 287 N~i~~~d~l~~~~pd~lR 304 (510)
T PRK00750 287 NVITIEDWLEYAPPESLR 304 (510)
T ss_pred CccCHHHHHHHCCHHHHH
Confidence 7887765 555555
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.23 E-value=4.7e-06 Score=83.49 Aligned_cols=175 Identities=20% Similarity=0.250 Sum_probs=107.6
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.|||||+..|+.+|...+ +.+.+.++=|-|. ++ .....+....+..++..+||+.+.- +++|
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar-------~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~-~~~Q 78 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDAR-------AHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDGP-VLYQ 78 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCCC-ceEe
Confidence 4679999999999999999872 4567777778774 22 2344456678888999999999863 6779
Q ss_pred CCcchh----h----HHHHHHhccccHHHHhhhhhH--------HHHhHhhC-CCC------------------------
Q 014464 163 SHVRAH----V----ELMWLLSSATPIGWLNKMIQF--------KEKSHKAG-GEN------------------------ 201 (424)
Q Consensus 163 S~v~~~----~----el~wiL~~~~~v~~l~R~~~~--------k~~~~~~g-~~~------------------------ 201 (424)
|+-.+. . +.-+.+.|.++-.++++..+- --.-+... .+.
T Consensus 79 S~r~~~Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~ 158 (299)
T PRK05710 79 SQRHDAYRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQ 158 (299)
T ss_pred eccHHHHHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeE
Confidence 995432 1 222336699998888654311 00000000 000
Q ss_pred ---c--cc---------cchhhhHHHHhhhhccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccC
Q 014464 202 ---V--GV---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKV 267 (424)
Q Consensus 202 ---~--~~---------g~l~YPvLQAADIl~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~ 267 (424)
. .+ |..+|=+-=+.|=...+.++|.=|.|....-..=.-|.+.|+ ++.
T Consensus 159 ~~~~~~~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~ 220 (299)
T PRK05710 159 HQDLALAVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPT 220 (299)
T ss_pred eeCCCCCCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCC
Confidence 0 01 222222222222233468899999998665555555555543 567
Q ss_pred CceecCCCCcccccCCCCCCccccCCC
Q 014464 268 PEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 268 P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
|+..+.+ .|.+. +| +||||++.
T Consensus 221 P~y~H~p---ll~~~-~g-~kLSKr~~ 242 (299)
T PRK05710 221 PRYLHLP---LVLNA-DG-QKLSKQNG 242 (299)
T ss_pred CeEEEee---cccCC-CC-CcccccCC
Confidence 8777654 77776 56 69999973
No 33
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.18 E-value=3.3e-05 Score=82.47 Aligned_cols=198 Identities=17% Similarity=0.183 Sum_probs=117.2
Q ss_pred eEEEecCCC--CcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGVQPT--GSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi~PT--G~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
.|.+.|.|| |.+||||...++-+|...+ +.+.+.++=|-|.-. .....+....+..++..+|||+
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar-------~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~w 70 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFAR-------HHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDW 70 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCC
Confidence 356777776 9999999999999998871 446677666766511 1223345556777888899999
Q ss_pred CceEEEEcCCcch-hhHHHH-------HHhccccHHHHhhhhh----------HHHHhHhh-------CC---------C
Q 014464 155 SKASVFVQSHVRA-HVELMW-------LLSSATPIGWLNKMIQ----------FKEKSHKA-------GG---------E 200 (424)
Q Consensus 155 ~k~~if~QS~v~~-~~el~w-------iL~~~~~v~~l~R~~~----------~k~~~~~~-------g~---------~ 200 (424)
+. ..|+||+-.+ +.+.+- .+-|+++-.++..+.. |....+.. +. +
T Consensus 71 De-~py~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~ 149 (513)
T PRK14895 71 NG-EVIFQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPR 149 (513)
T ss_pred CC-CceeEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCC
Confidence 84 3799999532 212111 1458888887764421 10000000 00 0
Q ss_pred C--c-----cccchhhh-------HH---------HHhhh---hccccceEecccchHHHHHHHHHHHHHHhhhhCCccc
Q 014464 201 N--V-----GVALLTYP-------VL---------MASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 254 (424)
Q Consensus 201 ~--~-----~~g~l~YP-------vL---------QAADI---l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~ 254 (424)
. + --|.+.++ |+ +.|.+ ...+.|+|..|.||..|.-.-..+.+.++
T Consensus 150 ~~~~~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------- 221 (513)
T PRK14895 150 EGSITIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------- 221 (513)
T ss_pred CCceEEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------
Confidence 0 0 00111111 11 11111 12368999999999999888777877754
Q ss_pred cccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC------CCHHHHHHHhhh
Q 014464 255 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 315 (424)
Q Consensus 255 ~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~------D~~e~I~kKI~k 315 (424)
+..|...+.+ .|.++ +| +||||.+. +..+. =.|+.|.+-+..
T Consensus 222 ----------~~~p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ----------YAVPSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ----------CCCCeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 4567766654 77777 56 69999974 33332 146666665543
No 34
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.13 E-value=0.00023 Score=75.71 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=112.8
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.+||||...|+-+|... + +.+.+.++=|=|. ++. ....+....+..++.-+||+++. ..|.|
T Consensus 9 sPtG~lHiG~~rtal~n~l~A-----r--~~~G~~iLRieDt----D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~Q 74 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFA-----K--HTGGEFILRIEDT----DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQ 74 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHH-----H--HcCCEEEEEeCcC----CCc--cCChHHHHHHHHHHHHCCCCCCC-Ceeeh
Confidence 478999999999999999877 1 4466666556553 211 22334556677788889999985 38999
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhhhhH-------------------HHHhHh--hCC---------C-C-c
Q 014464 163 SHVRA-HVELMWL-------LSSATPIGWLNKMIQF-------------------KEKSHK--AGG---------E-N-V 202 (424)
Q Consensus 163 S~v~~-~~el~wi-------L~~~~~v~~l~R~~~~-------------------k~~~~~--~g~---------~-~-~ 202 (424)
|+-.+ +.+..-. +.|+++-.++..+..- .+.... .|. . . +
T Consensus 75 S~r~~~y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~ 154 (470)
T TIGR00464 75 SQRLDIYKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVV 154 (470)
T ss_pred hCCHHHHHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCce
Confidence 98533 2221111 4588887777543110 000000 000 0 0 0
Q ss_pred c-----ccchh----------------hhHHH---HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccC
Q 014464 203 G-----VALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 258 (424)
Q Consensus 203 ~-----~g~l~----------------YPvLQ---AADIl~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~ 258 (424)
. -|.+. +|... +.|=...+.|+|..|.||..|...-..+.+.++
T Consensus 155 ~~~D~~~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------ 222 (470)
T TIGR00464 155 SFNDQVRGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------ 222 (470)
T ss_pred eEEecccceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------
Confidence 0 01111 12211 111122379999999999999988888887764
Q ss_pred CCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014464 259 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 315 (424)
Q Consensus 259 ~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 315 (424)
++.|...+.+ .+.++ +| +||||.+. .+.|.| .|+.+.+-+..
T Consensus 223 ------~~~p~~~H~p---~l~~~-~g-~kLSKR~g----~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 223 ------WKIPVFAHLP---MILDE-DG-KKLSKRDG----ATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred ------CCCCeEEEEe---eeecC-CC-ccccccCC----CccHHHHHHCCCCHHHHHHHHHH
Confidence 4567666554 56665 55 69999973 454432 46666665543
No 35
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.06 E-value=1.8e-05 Score=66.88 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=42.8
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHH
Q 014464 78 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAI 146 (424)
Q Consensus 78 i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~ 146 (424)
+++|-.| |.+|+||+.+ ++.+.++ + -.+++.++|.|+.+...+...++++.....+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~--------~--d~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGI--------A--DQCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHh--------C--CcEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 5678888 9999999986 7777776 4 26899999999987655666666666555443
No 36
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.00 E-value=0.0001 Score=78.45 Aligned_cols=192 Identities=20% Similarity=0.196 Sum_probs=116.0
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCce-----
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 157 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~----- 157 (424)
.|||.+||||...|+-+|... + +.+.+.++=|=|.- + .....+....+..++.-+||+.+..
T Consensus 12 SPtG~lHiG~~rtal~n~l~A-----r--~~~G~fiLRieDtD----~--~R~~~~~~~~i~~~L~wlGl~~De~p~~~~ 78 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFA-----R--HHGGKFILRIEDTD----Q--ERSTEEAEEAILEGLKWLGLDWDEGPDGGP 78 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHH-----H--HcCCEEEEEeCcCC----C--CCCChHHHHHHHHHHHHCCCCCCCCCccCC
Confidence 467999999999999999887 1 44566655554431 1 1233344556777777899998854
Q ss_pred -EEEEcCCcch-hhHHH-------HHHhccccHHHHhhhhhHHHH-------------------hHh--hCC--------
Q 014464 158 -SVFVQSHVRA-HVELM-------WLLSSATPIGWLNKMIQFKEK-------------------SHK--AGG-------- 199 (424)
Q Consensus 158 -~if~QS~v~~-~~el~-------wiL~~~~~v~~l~R~~~~k~~-------------------~~~--~g~-------- 199 (424)
-.|.||+-.+ +.+.. ..+.|+++-.+|.....-... ... .|.
T Consensus 79 ~gpy~QS~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~ 158 (476)
T PRK01406 79 YGPYRQSERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKV 158 (476)
T ss_pred CCceehhcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEc
Confidence 1599999533 22211 114588888877643210000 000 000
Q ss_pred ------------------CCccccch------hhhHHHHhhhh---ccccceEecccchHHHHHHHHHHHHHHhhhhCCc
Q 014464 200 ------------------ENVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252 (424)
Q Consensus 200 ------------------~~~~~g~l------~YPvLQAADIl---~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~ 252 (424)
.+..++-+ -+|..+.||++ ..+.|+|..|.||..|.-.-..+.+.|+
T Consensus 159 p~~~~~~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG------ 232 (476)
T PRK01406 159 PDEGEVVFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG------ 232 (476)
T ss_pred CCCCceEEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC------
Confidence 00001110 15666677764 3578999999999999988888888765
Q ss_pred cccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhh
Q 014464 253 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIK 314 (424)
Q Consensus 253 ~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~ 314 (424)
+..|...+.+ .+.++ +| +||||.+. .+.+.| .|+.+.+=+.
T Consensus 233 ------------~~~p~~~H~p---li~~~-~g-~klSKR~g----~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 233 ------------WEVPVFAHLP---LILGP-DG-KKLSKRHG----ATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred ------------CCCCeEEEee---eeeCC-CC-CcccCcCC----ccCHHHHHHCCCCHHHHHHHHH
Confidence 3457666544 56676 55 69999973 455432 4555555443
No 37
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.78 E-value=0.00013 Score=78.17 Aligned_cols=83 Identities=23% Similarity=0.289 Sum_probs=52.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceE-EEEEeccc--------------------eecC-CC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET-LFFIVDLH--------------------AITL-PY 131 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~-~i~IaDlh--------------------A~t~-~~ 131 (424)
+..|=||+-|||.+||||....+..-+-. +++. .|.++ +|+.+|.| .++. |.
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~-----r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpd 93 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIA-----RALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPD 93 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHH-----HHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCC
Confidence 57888999999999999997766542211 2233 36665 78899999 2232 11
Q ss_pred ----CHHHHHHHHHHHHHHHHHcCccCCceEEEEcCCc
Q 014464 132 ----DTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 165 (424)
Q Consensus 132 ----~~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS~v 165 (424)
...-..++-....+.+-.+||+. +|+.+++.
T Consensus 94 p~g~~~s~~~h~~~~~~~~l~~~gi~~---e~~s~te~ 128 (515)
T TIGR00467 94 PEGCKTSYAEHFLIPFLESLPVLGINP---EFIRASKQ 128 (515)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCeE---EEEEHHHh
Confidence 12223333344555555689964 68888874
No 38
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.74 E-value=0.00037 Score=69.11 Aligned_cols=175 Identities=17% Similarity=0.162 Sum_probs=102.5
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.|||||...++-+|... + +.+..+++=|=|.-. . ....+....+..++.-+||++++- .++|
T Consensus 8 SPtG~lHiG~~rtAL~n~l~A-----r--~~gG~~iLRiEDtD~----~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~Q 73 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDA-----R--AHGGRWLVRIEDLDP----P--REVPGAADDILRTLEAYGLHWDGE-VVYQ 73 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHH-----H--HhCCEEEEEeCcCCC----C--CCChHHHHHHHHHHHHcCCCCCCC-eeee
Confidence 488999999999999999887 1 446666655655421 1 223345556777777889999864 6789
Q ss_pred CCcchh-hHHH-------HHHhccccHHHHhhhh-----hHHHHhHh-----hCC----------CCcc-----ccchh-
Q 014464 163 SHVRAH-VELM-------WLLSSATPIGWLNKMI-----QFKEKSHK-----AGG----------ENVG-----VALLT- 208 (424)
Q Consensus 163 S~v~~~-~el~-------wiL~~~~~v~~l~R~~-----~~k~~~~~-----~g~----------~~~~-----~g~l~- 208 (424)
|+-.+. .+.. ..+.|+++-.++++.. .|...-+. .+. ..+. .|.+.
T Consensus 74 S~r~~~Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~ 153 (272)
T TIGR03838 74 SQRHALYQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQ 153 (272)
T ss_pred eCCHHHHHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEe
Confidence 995432 2211 1145888888776541 11100000 000 0000 01111
Q ss_pred ----------------hhHHHHhhh---hccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 014464 209 ----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 269 (424)
Q Consensus 209 ----------------YPvLQAADI---l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~ 269 (424)
||..+=|-. .+.+.++|.=|.|....--.=.-|.+.|+ ++.|.
T Consensus 154 ~~~~~~~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~ 215 (272)
T TIGR03838 154 DLAAAVGDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPR 215 (272)
T ss_pred cCcccCCCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCe
Confidence 233322222 22468899999998776555555555543 56787
Q ss_pred eecCCCCcccccCCCCCCccccCCC
Q 014464 270 PLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 270 ~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
..+.+ .|.+. +| +|+||++.
T Consensus 216 y~H~p---ll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 216 YLHLP---LVVNA-DG-EKLSKQNG 235 (272)
T ss_pred EEech---hhhCC-CC-CeeeccCC
Confidence 66654 77776 56 69999974
No 39
>PLN02627 glutamyl-tRNA synthetase
Probab=97.73 E-value=0.0041 Score=66.91 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=62.5
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCc
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSK 156 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k 156 (424)
++=-.=.|||.+||||...|+-+|... + +.+.+.++=|=|.-. .....+....+..++.-+||+.+.
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~A-----r--~~gG~fiLRIEDTD~------~R~~~e~~~~I~~~L~WLGl~wDe 113 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFA-----R--SKGGKFVLRIEDTDL------ARSTKESEEAVLRDLKWLGLDWDE 113 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHH-----H--HhCCEEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCc
Confidence 333344567999999999999999987 1 446666655655321 122334555677777789999986
Q ss_pred eE-------EEEcCCcch-hhHHH-------HHHhccccHHHHhhh
Q 014464 157 AS-------VFVQSHVRA-HVELM-------WLLSSATPIGWLNKM 187 (424)
Q Consensus 157 ~~-------if~QS~v~~-~~el~-------wiL~~~~~v~~l~R~ 187 (424)
-. -|+||+-.+ +.+.+ ..+.|+++-.++..+
T Consensus 114 gp~~gg~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 114 GPDVGGEYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred CcccCCCCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 42 599998533 21111 124588887777544
No 40
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.64 E-value=0.00026 Score=68.90 Aligned_cols=162 Identities=21% Similarity=0.181 Sum_probs=97.1
Q ss_pred EecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014464 80 SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 159 (424)
Q Consensus 80 sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 159 (424)
.|-.|||.+||||...++-+|+.. + +.+...++=|-|.- +...........++.+++..+|++++ ..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~A-----r--~~~G~~ilRieDtD----~~r~~~~~~~~~~i~~dL~wLGl~~d--~~ 72 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYA-----K--MYGGKFILRFDDTD----PRTKRPDPEAYDMIPEDLEWLGVKWD--EV 72 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHH-----H--HcCCEEEEeeCcCC----CCcccchHHHHHHHHHHHHHcCCCCC--Cc
Confidence 366788999999999999998876 1 33445554465541 11101344455568888899999998 57
Q ss_pred EEcCCcch-hhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHh---hhhccccceEecccchHHHH
Q 014464 160 FVQSHVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHL 235 (424)
Q Consensus 160 f~QS~v~~-~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAA---DIl~~~ad~vpvG~DQ~~hi 235 (424)
+.||+-.+ +.+..-.|- .+-..|. ....+ +. ..+||..+=| |=.+.+.++|.-|.|-..+-
T Consensus 73 ~~qS~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t 137 (240)
T cd09287 73 VIASDRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNT 137 (240)
T ss_pred cchhccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCC
Confidence 89998533 322221111 0111111 01111 11 1234555544 44456899999999988877
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 236 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 236 eLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
..=.-|.+.|+ ++.|...+.+ +|.. +| .||||.+
T Consensus 138 ~~q~~l~~~Lg------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 138 EKQRYIYEYFG------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred HHHHHHHHHcC------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 66666656543 5667766544 5542 45 7999997
No 41
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00029 Score=74.79 Aligned_cols=180 Identities=20% Similarity=0.185 Sum_probs=106.8
Q ss_pred EEEecC--CCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
|.+=|. |||.+||||...|+-||...+ +.+.++++=|=|. ++. ....+....+..++.-+||+++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar-------~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wd 76 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYAR-------KYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWD 76 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHH-------HhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCC
Confidence 555555 559999999999999998771 3356666556553 221 2233444556667778999999
Q ss_pred ceEEEEcCCcchh--hHHHHH------HhccccHHHHhhhhh-----------HH---------HHhHhhCC--------
Q 014464 156 KASVFVQSHVRAH--VELMWL------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG-------- 199 (424)
Q Consensus 156 k~~if~QS~v~~~--~el~wi------L~~~~~v~~l~R~~~-----------~k---------~~~~~~g~-------- 199 (424)
.. +++||+..+. .-..++ +.|.++-.+|+.+-. |- ++....+.
T Consensus 77 e~-~~~QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~ 155 (472)
T COG0008 77 EG-PYYQSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRL 155 (472)
T ss_pred Cc-eeehhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEE
Confidence 75 8999996432 223333 348888866665421 11 00011000
Q ss_pred --C--Cc-------cccchhhh------HHHHhhhhc------------cccceEecccchHHHHHHHHHHHHHHhhhhC
Q 014464 200 --E--NV-------GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYG 250 (424)
Q Consensus 200 --~--~~-------~~g~l~YP------vLQAADIl~------------~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g 250 (424)
. .. -.|.+..+ +++-+|+.. .+.++|.-|.|+..+=..-+-|-+-|+
T Consensus 156 k~~~~~~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg---- 231 (472)
T COG0008 156 KIPMAHPGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG---- 231 (472)
T ss_pred eCCCCCCCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC----
Confidence 0 00 01222222 333333332 258899999998877666555655433
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 251 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 251 ~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 --------------~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 --------------WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred --------------CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 5678777654 7777 455 79999974
No 42
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.60 E-value=0.0005 Score=68.95 Aligned_cols=59 Identities=24% Similarity=0.215 Sum_probs=34.3
Q ss_pred ccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 221 QSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 221 ~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
..|+..+|.||. +|++...-.+.-++ | ...|..+... .++- + +|.+|||||. +|.
T Consensus 226 ~~di~~~G~D~~~~h~~~~~~~~~~~~---~--------------~~~~~~~~~~--g~~~-~-~~g~KmSKS~---gn~ 281 (312)
T cd00668 226 PADWHLIGKDILRGWANFWITMLVALF---G--------------EIPPKNLLVH--GFVL-D-EGGQKMSKSK---GNV 281 (312)
T ss_pred CceEEEEecchhhhHHHHHHHHHHHhc---C--------------CCCcceeEEC--cEEE-c-CCCccccccC---CCc
Confidence 468999999999 77765444433322 1 0123222221 2333 3 3337999997 578
Q ss_pred eecC
Q 014464 300 INLL 303 (424)
Q Consensus 300 I~L~ 303 (424)
|++.
T Consensus 282 v~~~ 285 (312)
T cd00668 282 IDPS 285 (312)
T ss_pred CCHH
Confidence 8773
No 43
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.58 E-value=0.00033 Score=68.14 Aligned_cols=158 Identities=16% Similarity=0.086 Sum_probs=91.4
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.+||||...++-+|.... +.+.+.++=|=|. ++ .....+....+..++..+||+.+ .+++|
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar-------~~~G~~iLRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wD--~~~~Q 73 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAK-------KYGGRCNLRFDDT----NP--EKEEEEYVDSIKEDVKWLGIKPY--KVTYA 73 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEecCC----CC--cccchHHHHHHHHHHHHcCCCCC--Cceec
Confidence 5789999999999999998761 4456665545443 11 13344556677788888999999 57899
Q ss_pred CCcch-hhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHh---hhhccccceEecccchHHHHHHH
Q 014464 163 SHVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELT 238 (424)
Q Consensus 163 S~v~~-~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAA---DIl~~~ad~vpvG~DQ~~hieLa 238 (424)
|+-.+ +.+..-.|- ++-..|.. ...+ + ...+||..+=| |=.+.+.++|.-|.|....-..-
T Consensus 74 S~r~~~Y~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q 138 (238)
T cd00807 74 SDYFDQLYEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSY 138 (238)
T ss_pred ccCHHHHHHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHH
Confidence 98533 222111111 00001110 0001 1 12235555543 44556899999999987765554
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 239 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 239 Rdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
.-|.+.|+ ++.|..+.-. .+ +. +| .|+||.+.
T Consensus 139 ~~l~~aLg------------------~~~P~~~~~~---hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 139 YWLCDALR------------------LYRPHQWEFS---RL-NL-TY-TVMSKRKL 170 (238)
T ss_pred HHHHHHcC------------------CCCCceeEEE---EE-CC-CC-CCccCcCc
Confidence 55555543 4567432211 22 33 55 69999973
No 44
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.54 E-value=0.00046 Score=70.75 Aligned_cols=69 Identities=23% Similarity=0.400 Sum_probs=32.8
Q ss_pred hccccceEecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 218 LLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~~---hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
-.++.|+.|.|.|+.. -...+.+||+++ || .+.|..+.-. +-++ .|.+|||||.
T Consensus 231 ~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmSsSk- 287 (360)
T PF01921_consen 231 AALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMSSSK- 287 (360)
T ss_dssp HHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S----------
T ss_pred hhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccccCC-
Confidence 3357999999999999 999999999764 55 4567665432 3344 3446999997
Q ss_pred CCCceeecCC-----CHHHHHH
Q 014464 295 SDQSRINLLD-----PKDVIAN 311 (424)
Q Consensus 295 ~~~s~I~L~D-----~~e~I~k 311 (424)
++.|.+.| +||.++-
T Consensus 288 --G~~~t~~e~L~~~~PE~lr~ 307 (360)
T PF01921_consen 288 --GNGITPEEWLEYAPPESLRY 307 (360)
T ss_dssp -------HHHHHTTS-HHHHHH
T ss_pred --CCccCHHHHHHhcCHHHHHH
Confidence 56666643 6666653
No 45
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00016 Score=76.40 Aligned_cols=84 Identities=19% Similarity=0.316 Sum_probs=49.3
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccc-ccccCceE-EEEEeccceecC--CC---CHHHHHHHH------
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDL-MLQNSYET-LFFIVDLHAITL--PY---DTQQLSKAT------ 140 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~-~~Q~~~~~-~i~IaDlhA~t~--~~---~~~~i~~~~------ 140 (424)
...++=||+-|||.+||||+-=.+.- .+ |-+ ..+.|+++ +|+++|.+-=+- +. +++.+.++.
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~--d~---V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~ 93 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTA--DA---VRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTE 93 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHH--HH---HHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCcccc
Confidence 46788999999999999997432221 11 001 11346665 778888765542 21 335554433
Q ss_pred ------------HHHHHHH----HHcCccCCceEEEEcCCc
Q 014464 141 ------------RETAAIY----LACGIDNSKASVFVQSHV 165 (424)
Q Consensus 141 ------------~~~~~~~----lA~GlDp~k~~if~QS~v 165 (424)
..+.+.+ --+|+++ +++.+|+.
T Consensus 94 IPdP~G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 94 IPDPFGCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred CCCCccccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 3333333 3478876 58888773
No 46
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.39 E-value=0.00067 Score=71.34 Aligned_cols=90 Identities=27% Similarity=0.318 Sum_probs=60.0
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.+||||...|+-+|.... +.+.+.++=|=|.-. .....+....+..++.-+||+.+. .|.|
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar-------~~gG~fiLRiEDTD~------~R~~~e~~~~I~~~L~WlGl~wDe--~y~Q 71 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAK-------QQNEDFLIRIEDTDK------ERNIEGKDKEILEILNLFGISWDK--LVYQ 71 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcCCC------CcCChHHHHHHHHHHHHcCCCCCC--Ceeh
Confidence 4889999999999999999871 446666655655321 122334555677777789999985 6999
Q ss_pred CCcch-h---hHHHHH----HhccccHHHHhhh
Q 014464 163 SHVRA-H---VELMWL----LSSATPIGWLNKM 187 (424)
Q Consensus 163 S~v~~-~---~el~wi----L~~~~~v~~l~R~ 187 (424)
|+-.+ + .+...- +-|+++-.++..+
T Consensus 72 SeR~~~Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 72 SENLKFHRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred hccHHHHHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 99532 2 221111 4588888877644
No 47
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.37 E-value=0.0012 Score=69.76 Aligned_cols=90 Identities=22% Similarity=0.194 Sum_probs=59.9
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.+||||...|+-+|+.. .+.+.+.++=|=|.- . ..........+..++..+|++.+. .|.|
T Consensus 10 SPTG~lHiG~artAL~n~l~A-------r~~gG~fiLRIEDTD----~--~Rs~~~~~~~I~e~L~wLGI~~De--~y~Q 74 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYA-------RKHGGKFILRIDDTD----L--ERSKQEYADAIAEDLKWLGINWDR--TFRQ 74 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHH-------HHhCCEEEEEeccCC----c--ccchHHHHHHHHHHHHHcCCCCCc--cccH
Confidence 478999999999999999987 144666665565542 1 123344555677778889999984 7999
Q ss_pred CCcchh-hHHH-------HHHhccccHHHHhhh
Q 014464 163 SHVRAH-VELM-------WLLSSATPIGWLNKM 187 (424)
Q Consensus 163 S~v~~~-~el~-------wiL~~~~~v~~l~R~ 187 (424)
|+..+. .+.. ..+.|+++-.++..+
T Consensus 75 Ser~~~y~~~~e~L~e~G~AY~C~Ct~eel~~~ 107 (445)
T PRK12558 75 SDRFDRYDEAAEKLKAAGRLYPCYETPEELELK 107 (445)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEecCchHHHHHH
Confidence 985332 1111 124588888777543
No 48
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.37 E-value=0.00096 Score=71.55 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=61.2
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
+.+=| .|||.+||||.-.++-+|.... +.+..+++=|=|. ++ .....+....+..++.-+|++++
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar-------~~gG~~iLRiEDT----Dp--~R~~~e~~~~I~~dL~WLGl~wD 78 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYAR-------RYKGRLILRFDDT----NP--SKEKAEFEESIIEDLGKIEIKPD 78 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECCC----CC--CccchHHHHHHHHHHHHhCCCCC
Confidence 44444 4569999999999999998761 3355555445442 22 23444566677778888999998
Q ss_pred ceEEEEcCCcchh-hHHHHH-------HhccccHHHHh
Q 014464 156 KASVFVQSHVRAH-VELMWL-------LSSATPIGWLN 185 (424)
Q Consensus 156 k~~if~QS~v~~~-~el~wi-------L~~~~~v~~l~ 185 (424)
. ++.||+..+. .+.+-. +.|.++-.++.
T Consensus 79 ~--~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~ 114 (523)
T PLN03233 79 S--VSFTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMK 114 (523)
T ss_pred C--CccccccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence 5 7899996542 222222 45888877774
No 49
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.28 E-value=0.00031 Score=75.29 Aligned_cols=196 Identities=18% Similarity=0.174 Sum_probs=98.4
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEE--EEeccceecCC------CCHHHHH-HHHHHHHHH
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF--FIVDLHAITLP------YDTQQLS-KATRETAAI 146 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i--~IaDlhA~t~~------~~~~~i~-~~~~~~~~~ 146 (424)
.-|+|--|+|.+|+||..+++---+- .+++. .|++|+. .+.||-.-+.. ..|+.+. .....+..+
T Consensus 115 Ie~~spnp~g~lHiGH~R~~iigD~l-----aR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (507)
T PRK01611 115 VEYVSANPTGPLHVGHLRSAVIGDAL-----ARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKED 189 (507)
T ss_pred EEecCCCCCCCCcCCchHHHHHHHHH-----HHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33669999999999998776543221 12233 4777643 36666432210 1233333 344567778
Q ss_pred HHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHh----hhhhHHHHhHhhCCC-Cc----cccchhhhHHHHhhh
Q 014464 147 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLN----KMIQFKEKSHKAGGE-NV----GVALLTYPVLMASDI 217 (424)
Q Consensus 147 ~lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~----R~~~~k~~~~~~g~~-~~----~~g~l~YPvLQAADI 217 (424)
|..+|+.++ .+++.|+........+++.....-|-+. ...-|. ...++++ .. +=|..+|. +.||
T Consensus 190 l~~LgI~~D--~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~--~~~~~~~~~~vl~ksdG~~~Y~---t~Di 262 (507)
T PRK01611 190 LDRLGVHFD--VWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVR--LTEFGDDKDRVLIKSDGTYTYF---TRDI 262 (507)
T ss_pred HHHcCCeee--EEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEE--chhhCCCCCeEEEECCCCccch---HHHH
Confidence 888999875 3455554322111122221111000000 000000 0011100 00 22555663 3455
Q ss_pred hcc-------ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--c-eecCCCCcccccCCCCCC
Q 014464 218 LLY-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLS 287 (424)
Q Consensus 218 l~~-------~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P--~-~l~~~~~~~l~~L~dg~~ 287 (424)
-+. +--+-.+|.||..|+.-...+++.++. ..+ . .++... .++-+ .+| +
T Consensus 263 a~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv~~-~~g-~ 321 (507)
T PRK01611 263 AYHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLVRG-GEG-V 321 (507)
T ss_pred HHHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-EeeEC-CCC-C
Confidence 442 233449999999999999999988662 111 1 122111 12222 244 6
Q ss_pred ccccCCCCCCceeecCCCHHH
Q 014464 288 KMSKSAPSDQSRINLLDPKDV 308 (424)
Q Consensus 288 KMSKS~p~~~s~I~L~D~~e~ 308 (424)
|||||. ++.|.+.|==++
T Consensus 322 KMSkR~---Gn~i~l~dll~~ 339 (507)
T PRK01611 322 KMSTRA---GNVVTLDDLLDE 339 (507)
T ss_pred cccCCC---CceeEHHHHHHH
Confidence 999997 688888663333
No 50
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.26 E-value=0.0016 Score=70.77 Aligned_cols=179 Identities=15% Similarity=0.125 Sum_probs=104.4
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
.+.+=| .|||.|||||...++-+|.... +.+..+++=|=|. ++. ....+....+..++..+||++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar-------~~gG~~iLRiEDT----Dp~--R~~~e~~d~IleDL~WLGl~w 118 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLAD-------KYKGKLVFRFDDT----NPS--KEKEHFEQAILDDLATLGVSW 118 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEEcCC----CCc--ccCHHHHHHHHHHHHHCCCCC
Confidence 355545 4669999999999999998761 3355555445443 221 344566677888888999999
Q ss_pred CceEEEEcCCcchh-hHHHHH-------HhccccHHHHhhhh------hHHHH-----h---H--hhCC--C--------
Q 014464 155 SKASVFVQSHVRAH-VELMWL-------LSSATPIGWLNKMI------QFKEK-----S---H--KAGG--E-------- 200 (424)
Q Consensus 155 ~k~~if~QS~v~~~-~el~wi-------L~~~~~v~~l~R~~------~~k~~-----~---~--~~g~--~-------- 200 (424)
+. .+++||+..+. .+.+-. +.|.++-.++.... .+.+. . + ..|. +
T Consensus 119 De-~~~~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~k 197 (601)
T PTZ00402 119 DV-GPTYSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAK 197 (601)
T ss_pred CC-ceeeccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEe
Confidence 85 26789996443 222211 35777766653321 11110 0 0 0000 0
Q ss_pred ------Cccccc------------------hhhhHHHHhhhh---ccccceEecccchHHHHHHHHHHHHHHhhhhCCcc
Q 014464 201 ------NVGVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 253 (424)
Q Consensus 201 ------~~~~g~------------------l~YPvLQAADIl---~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~ 253 (424)
+.+++- -.||..+=|-.+ +.+.++|..|.|...+-..-.-|.+.|+
T Consensus 198 id~~~~n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------- 270 (601)
T PTZ00402 198 ISVDNENKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------- 270 (601)
T ss_pred cccCCCCCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC-------
Confidence 001100 144444433222 2468999999999888777666766654
Q ss_pred ccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 254 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 254 ~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
++.|...+.+ + .++ +| .||||+.
T Consensus 271 -----------~~~P~~~h~~---r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 -----------IRKPIVEDFS---R-LNM-EY-SVMSKRK 293 (601)
T ss_pred -----------CCCceEEEEe---e-EcC-CC-CcccccC
Confidence 5567665543 4 465 56 6999996
No 51
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.22 E-value=0.0028 Score=64.04 Aligned_cols=92 Identities=16% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.|||||...|+-+|... + +.+...++=|=|. ++. ....+....+..++..+||+++ -..+.|
T Consensus 9 sPtG~lHiG~~r~al~n~~~A-----r--~~~G~~iLRieDt----D~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~Q 74 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFA-----R--KYGGKFILRIEDT----DPE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQ 74 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHH-----H--HTTSEEEEEEETS----STT--TCHHHHHHHHHHHHHHHT---S-TCEEEG
T ss_pred CCCCCcccchhHHHHHHHHHH-----h--ccCceEEEecccc----ccc--cchhhHHHHHHhheeEEEEecC-CeEEeH
Confidence 578999999999999999877 1 4456666556554 211 2334555667778888999987 357889
Q ss_pred CCcchh----hHHH----HHHhccccHHHHhhhh
Q 014464 163 SHVRAH----VELM----WLLSSATPIGWLNKMI 188 (424)
Q Consensus 163 S~v~~~----~el~----wiL~~~~~v~~l~R~~ 188 (424)
|+-.+. .+.. ..+.|.++-.+++...
T Consensus 75 S~r~~~Y~~~~~~L~~~g~aY~C~Csr~~l~~~r 108 (314)
T PF00749_consen 75 SDRLEIYQEAAEKLIDKGKAYPCFCSREELKAAR 108 (314)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEEESEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCccccCCHHHHHHHH
Confidence 985432 2211 2245888776666443
No 52
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.18 E-value=0.00098 Score=63.36 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=77.7
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEE-EEecccee-cCC-----CCHHHHH-HHHHHHHHHHHH
Q 014464 79 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF-FIVDLHAI-TLP-----YDTQQLS-KATRETAAIYLA 149 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i-~IaDlhA~-t~~-----~~~~~i~-~~~~~~~~~~lA 149 (424)
||+=-|+|.+||||..+++--- . +.+++. .|++|+. ...|.|.. +.. ..|.++. .....+..+|.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD-~----l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGD-S----LARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGR 80 (212)
T ss_pred ecCCCCCCCccccccHHHHHHH-H----HHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677799999999987644211 1 112222 3777643 34433322 110 1233333 333466778888
Q ss_pred cCccCCceEEEEcCCcchhhHHHHH-Hh--ccc--cHHHH-hhhhhHHHHhHhhCCCCc---cccchhhhH---HHHhhh
Q 014464 150 CGIDNSKASVFVQSHVRAHVELMWL-LS--SAT--PIGWL-NKMIQFKEKSHKAGGENV---GVALLTYPV---LMASDI 217 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~~~el~wi-L~--~~~--~v~~l-~R~~~~k~~~~~~g~~~~---~~g~l~YPv---LQAADI 217 (424)
+|+.++ .++.-|+........|- |. ... .-|.. -....|++ . .+-+ +=|..+|.. -.+.|=
T Consensus 81 L~i~~d--~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~~~~----~-~d~vl~rsdG~~~Y~~~DlA~~~~~ 153 (212)
T cd00671 81 LDVRFD--VWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTEFGD----D-KDRVLVRSDGTYTYFTRDIAYHLDK 153 (212)
T ss_pred hCCcCc--eecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechhhCC----C-CCeEEEECCCCccchHHHHHHHHHH
Confidence 999765 34455554222111111 11 000 00000 00001100 0 0000 226666752 222222
Q ss_pred hccccceE--ecccchHHHHHHHHHHHHHHh
Q 014464 218 LLYQSDFV--PVGEDQKQHLELTRELAERVN 246 (424)
Q Consensus 218 l~~~ad~v--pvG~DQ~~hieLaRdia~r~n 246 (424)
+.+++|.+ .+|.||..|+.-.+.+++.++
T Consensus 154 ~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 154 FERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred HhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 23578888 999999999999999999876
No 53
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.13 E-value=0.032 Score=59.37 Aligned_cols=76 Identities=9% Similarity=-0.004 Sum_probs=46.2
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEEEe-cccee-c-C-----CCCHH-HHHHHHHHH
Q 014464 75 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFFIV-DLHAI-T-L-----PYDTQ-QLSKATRET 143 (424)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~Ia-DlhA~-t-~-----~~~~~-~i~~~~~~~ 143 (424)
.+.+| +|--|.|.+||||..+.+. .++ +.+++. .|++|++... |.|.- + . ..++. ..+.++..+
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~--~Dv---l~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f 97 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVV--FDV---LRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAF 97 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHH--HHH---HHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45565 8999999999999765432 122 223333 3788877654 33321 1 0 12443 345566678
Q ss_pred HHHHHHcCc-cCC
Q 014464 144 AAIYLACGI-DNS 155 (424)
Q Consensus 144 ~~~~lA~Gl-Dp~ 155 (424)
.+++.++|+ .|+
T Consensus 98 ~~~~~~Lgi~~~d 110 (463)
T PRK00260 98 HEDMDALNVLPPD 110 (463)
T ss_pred HHHHHHcCCCCCC
Confidence 889999999 554
No 54
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=96.96 E-value=0.0051 Score=66.77 Aligned_cols=181 Identities=18% Similarity=0.126 Sum_probs=106.7
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
++...+=.|||.+||||...++-+|... + +.+..+++=|-|. ++.......+....+..++..+|++++
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~A-----r--~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD 170 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYA-----K--MYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWD 170 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHH-----H--HcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCC
Confidence 4556677788999999999999998876 1 3355565556554 221112334444667778888999998
Q ss_pred ceEEEEcCCcchh-hHHH-------HHHhccccHHHHhhhhh------HH-----H-------HhH----------hhCC
Q 014464 156 KASVFVQSHVRAH-VELM-------WLLSSATPIGWLNKMIQ------FK-----E-------KSH----------KAGG 199 (424)
Q Consensus 156 k~~if~QS~v~~~-~el~-------wiL~~~~~v~~l~R~~~------~k-----~-------~~~----------~~g~ 199 (424)
. ++.||+..+. .+.+ ..+.|.++-.++.+... .. + +.. +...
T Consensus 171 ~--~~~qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~ 248 (567)
T PRK04156 171 E--VVIQSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKT 248 (567)
T ss_pred C--ccCcccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEEC
Confidence 4 7899996432 2211 11457776655532210 00 0 000 0000
Q ss_pred ----CCcc------------------ccchhhhHHHHh---hhhccccceEecccchHHHHHHHHHHHHHHhhhhCCccc
Q 014464 200 ----ENVG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 254 (424)
Q Consensus 200 ----~~~~------------------~g~l~YPvLQAA---DIl~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~ 254 (424)
.+.+ -+-..||.++=| |..+.+.|+|.-|.|...+-..-.-+.+.|+
T Consensus 249 d~~~~n~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------- 320 (567)
T PRK04156 249 DLEHPNPSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------- 320 (567)
T ss_pred cccCCCCCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------
Confidence 0000 011236665433 3344679999999999887776666666543
Q ss_pred cccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 255 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 255 ~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
+..|...+.+ +|. + +| .|||||.
T Consensus 321 ----------~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ----------WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred ----------CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 4567776654 654 4 56 5999996
No 55
>PLN02907 glutamate-tRNA ligase
Probab=96.81 E-value=0.0061 Score=68.08 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=59.9
Q ss_pred eEEEecC--CCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
.|.+=|. |||.+||||.-.++-+|... + +.+..+++=|=|. ++. ....+....+..++.-+|+++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~A-----r--~~~G~~iLR~eDT----dp~--r~~~e~~~~I~~dl~wLG~~~ 279 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFA-----R--RYKGKLIVRFDDT----NPS--KESDEFVENILKDIETLGIKY 279 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHH-----H--HhCCEEEEEecCC----CCC--cCChHHHHHHHHHHHHcCCCC
Confidence 4556555 56999999999999999876 1 3355555445442 221 233345556777777889999
Q ss_pred CceEEEEcCCcchh-hHHHHH-------HhccccHHHHh
Q 014464 155 SKASVFVQSHVRAH-VELMWL-------LSSATPIGWLN 185 (424)
Q Consensus 155 ~k~~if~QS~v~~~-~el~wi-------L~~~~~v~~l~ 185 (424)
++ ++.||+..+. .+.+-. +.|.++..++.
T Consensus 280 d~--~~~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 280 DA--VTYTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred CC--cccccccHHHHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 85 6889996442 222211 34777776664
No 56
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=96.68 E-value=0.014 Score=55.84 Aligned_cols=74 Identities=12% Similarity=0.023 Sum_probs=44.7
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEEE-eccceecC-------CCCH-HHHHHHHHHHHH
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFFI-VDLHAITL-------PYDT-QQLSKATRETAA 145 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~~ 145 (424)
....+|-=|-|.+||||....+ +.++ ..+++. .|++|++.. .|.|..-. ..++ +-.++++..+.+
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v--~~Dv---l~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~ 96 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYV--VFDV---LRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFE 96 (213)
T ss_pred eEEEeCCccCCCcccccchhHH--HHHH---HHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4555688888999999975432 1222 223333 378876553 35554311 1244 445566677888
Q ss_pred HHHHcCccC
Q 014464 146 IYLACGIDN 154 (424)
Q Consensus 146 ~~lA~GlDp 154 (424)
++.++|+.+
T Consensus 97 ~~~~l~i~~ 105 (213)
T cd00672 97 DMKALNVLP 105 (213)
T ss_pred HHHHcCCCC
Confidence 888999986
No 57
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=96.63 E-value=0.0076 Score=60.73 Aligned_cols=67 Identities=12% Similarity=0.145 Sum_probs=39.6
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceE-EEEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCcc
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGID 153 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~GlD 153 (424)
|+|.+||||..+.+. .++ +.+++ ..|++| +++-.|.|..-. ..++. -.+++.....+++.++|+.
T Consensus 11 ~ng~~HiGH~~~~v~--~Dv---~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~ 85 (314)
T cd00812 11 PSGALHVGHVRTYTI--GDI---IARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFS 85 (314)
T ss_pred CCCCccccchHHHHH--HHH---HHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 579999999876442 222 22333 337777 444566664321 11333 3445556777888889987
Q ss_pred CC
Q 014464 154 NS 155 (424)
Q Consensus 154 p~ 155 (424)
++
T Consensus 86 ~d 87 (314)
T cd00812 86 YD 87 (314)
T ss_pred ee
Confidence 65
No 58
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.53 E-value=0.041 Score=59.56 Aligned_cols=95 Identities=14% Similarity=0.032 Sum_probs=60.6
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
|.+=| .|||.|||||.-.|+-+|...+ +.+..+++=|=|. ++. ....+....+..++.-+|++++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar-------~~~G~~iLRieDT----d~~--r~~~e~~~~I~~dL~wLGi~~d 96 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQ-------DYGGKCNLRFDDT----NPE--KEDQEYVDSIKEDVRWLGFDWS 96 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECCC----CCC--cCChHHHHHHHHHHHHcCCCCC
Confidence 44444 5669999999999999998761 3355555445432 221 2334556677777888999994
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHhh
Q 014464 156 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLNK 186 (424)
Q Consensus 156 k~~if~QS~v~~-~~el~wi-------L~~~~~v~~l~R 186 (424)
. .+++||+..+ +.+.+.. +.|.++-.++.+
T Consensus 97 ~-~~~~qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~ 134 (554)
T PRK05347 97 G-ELRYASDYFDQLYEYAVELIKKGKAYVDDLSAEEIRE 134 (554)
T ss_pred C-CceeeecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence 3 3688999654 4333333 348888776643
No 59
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.42 E-value=0.037 Score=60.01 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=61.7
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
.+.|=| .|||.|||||...++-+|...+ +.+..+++=|=|. ++. ....+....+..++.-+|+++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar-------~~gG~~iLRiEDT----Dp~--r~~~e~~~~I~~dL~wLGi~~ 117 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSAR-------AHGGKCYLRYDDT----NPE--TEEQVYIDAIMEMVKWMGWKP 117 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEECCC----Ccc--ccChHHHHHHHHHHHHcCCCC
Confidence 344544 5669999999999999998761 3355665555443 221 234456667778888899999
Q ss_pred CceEEEEcCCcch-hhHHHHH-------HhccccHHHHhh
Q 014464 155 SKASVFVQSHVRA-HVELMWL-------LSSATPIGWLNK 186 (424)
Q Consensus 155 ~k~~if~QS~v~~-~~el~wi-------L~~~~~v~~l~R 186 (424)
++ ++.||++.+ +.+.+-. +.|.++-.++++
T Consensus 118 D~--~~~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 118 DW--VTFSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred CC--CCcCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 85 568999754 3232222 348888776653
No 60
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.30 E-value=0.046 Score=59.45 Aligned_cols=94 Identities=17% Similarity=0.121 Sum_probs=61.2
Q ss_pred eEEEecC--CCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 77 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 77 ~i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
.+.+=|. |||.+||||...++-+|.... +.+..+++=|=|. ++. ....+....+..++..+|+++
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar-------~~~G~~iLRidDT----Dp~--R~~~e~~~~I~edL~wLGi~~ 159 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAK-------KYKGKLIIRFDDT----DPR--RVKPEAYDMILEDLDWLGVKG 159 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHH-------hcCCEEEEEeCcC----Ccc--cccHHHHHHHHHHHHHcCCCC
Confidence 4666565 559999999999999988661 3345555445443 221 333456667788888899999
Q ss_pred CceEEEEcCCcch-hhHHHH-------HHhccccHHHHh
Q 014464 155 SKASVFVQSHVRA-HVELMW-------LLSSATPIGWLN 185 (424)
Q Consensus 155 ~k~~if~QS~v~~-~~el~w-------iL~~~~~v~~l~ 185 (424)
+. ++.||+..+ +.+..- .+.|.++-.++.
T Consensus 160 d~--~~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 160 DE--VVYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred Cc--cccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 84 789999643 222221 145888877664
No 61
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.24 E-value=0.052 Score=58.51 Aligned_cols=91 Identities=10% Similarity=-0.027 Sum_probs=58.8
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEEc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 162 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~Q 162 (424)
.|||.|||||...|+-+|...+ +.+..+++=|=|. ++ .....+....+..++.-+|++++. .+++|
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~-------~~~G~~iLRieDT----d~--~r~~~e~~~~I~~dL~wLG~~~d~-~~~~q 73 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAK-------YYNGTCNLRFDDT----NP--VKEDPEYVESIKRDVEWLGFKWEG-KIRYS 73 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEEcCC----Cc--ccCChHHHHHHHHHHHHcCCCCCC-CceEc
Confidence 5889999999999999998761 3355555545443 22 123345566777788889999953 36789
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhh
Q 014464 163 SHVRA-HVELMWL-------LSSATPIGWLNKM 187 (424)
Q Consensus 163 S~v~~-~~el~wi-------L~~~~~v~~l~R~ 187 (424)
|+..+ +.+.+-. +.|.++-.++++.
T Consensus 74 S~~~~~~~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 74 SDYFDELYRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred cccHHHHHHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 99643 3222211 3588887666443
No 62
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=94.91 E-value=0.14 Score=54.67 Aligned_cols=76 Identities=13% Similarity=0.000 Sum_probs=45.4
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEe-ccceecC-------CCCHH-HHHHHHHHHHH
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAA 145 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~Ia-DlhA~t~-------~~~~~-~i~~~~~~~~~ 145 (424)
....+|.-|-|.+||||..+.+.. ++ +.++++. |++|.+... |.|.--. ..++. ..+.++..+..
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~--Dv---l~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVF--DV---LRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred eEEEecCccCCCcccccchHHHHH--HH---HHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 445679888899999997654432 21 1244433 788865543 5542210 12443 33455667788
Q ss_pred HHHHcCccCCc
Q 014464 146 IYLACGIDNSK 156 (424)
Q Consensus 146 ~~lA~GlDp~k 156 (424)
++.++|+.++.
T Consensus 98 dl~~LgI~~d~ 108 (465)
T TIGR00435 98 DMKALNVLPPD 108 (465)
T ss_pred HHHHhCCCCCc
Confidence 88899997543
No 63
>PLN02859 glutamine-tRNA ligase
Probab=94.83 E-value=0.069 Score=59.93 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=59.9
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
|.+=| .|||.+||||.-.++-+|.... +.+..+++=|=|. ++. ....+....+..++.-+|++|+
T Consensus 265 V~tRFaPsPtG~LHiGharaallN~~~Ar-------~~~G~~~LRieDT----dp~--r~~~e~~~~I~edL~WLG~~~d 331 (788)
T PLN02859 265 VYTRFPPEPNGYLHIGHAKAMFVDFGLAK-------ERGGCCYLRFDDT----NPE--AEKKEYIDHIEEIVEWMGWEPF 331 (788)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEecCC----CCC--ccchHHHHHHHHHHHHcCCCCC
Confidence 44444 5679999999999999998761 3355555445442 221 2334555667777778899998
Q ss_pred ceEEEEcCCcc-hhhHHHHH-------HhccccHHHHh
Q 014464 156 KASVFVQSHVR-AHVELMWL-------LSSATPIGWLN 185 (424)
Q Consensus 156 k~~if~QS~v~-~~~el~wi-------L~~~~~v~~l~ 185 (424)
+ +++||+.. .+.+.+-. +.|.++-.++.
T Consensus 332 ~--~~~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 332 K--ITYTSDYFQELYELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred C--cccccHhHHHHHHHHHHHHHcCCeEeccCCHHHHH
Confidence 5 68899975 34332222 34888776664
No 64
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=94.66 E-value=0.093 Score=59.11 Aligned_cols=96 Identities=13% Similarity=0.120 Sum_probs=60.0
Q ss_pred EEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
|.|=| .|||.+||||...++-+|.... +.+..+++=|=|. ++. ....+....+..++.-+|++++
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~-------~~~G~~~LR~eDT----d~~--r~~~e~~~~I~~dl~wLG~~wd 98 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIAR-------DYGGRCHLRMDDT----NPE--TEDTEYVEAIKDDVRWLGFDWG 98 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHH-------HhCCEEEEEeCCC----CCC--cCChHHHHHHHHHHHHcCCCCC
Confidence 44544 4669999999999999998761 3355555445442 221 2334555667777788899987
Q ss_pred ceEEEEcCCcch-hhHHH-HH------HhccccHHHHhhh
Q 014464 156 KASVFVQSHVRA-HVELM-WL------LSSATPIGWLNKM 187 (424)
Q Consensus 156 k~~if~QS~v~~-~~el~-wi------L~~~~~v~~l~R~ 187 (424)
.. ++.||+..+ +.+.+ ++ +.|.++-.++.+.
T Consensus 99 ~~-~~~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 99 EH-LYYASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred CC-ceEeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 43 688999643 22211 11 4588886666433
No 65
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=90.88 E-value=0.57 Score=48.73 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=11.7
Q ss_pred CccchHHHHHHhcCCCCHH
Q 014464 332 PECNNLLSIYQLISGKTKG 350 (424)
Q Consensus 332 pe~~nll~i~~~~s~~~~e 350 (424)
...+.+.++.+++-+.+..
T Consensus 280 ~q~~la~ei~~~vhg~~~~ 298 (377)
T TIGR00234 280 VKENLAKEITKYVHGEEAA 298 (377)
T ss_pred HHHHHHHHHHHHhcCHHHH
Confidence 3445666777777765443
No 66
>PLN02224 methionine-tRNA ligase
Probab=89.89 E-value=1.5 Score=48.45 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=50.0
Q ss_pred CCceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEE-EEeccceec--C-----CCCH-HHHHHHHHH
Q 014464 74 VKKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAIT--L-----PYDT-QQLSKATRE 142 (424)
Q Consensus 74 ~~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t--~-----~~~~-~~i~~~~~~ 142 (424)
++..|-|++ -|+|.+||||..+.+.. ++ +-+|+ ..|++|++ .-.|-|..- . ..++ +..++++..
T Consensus 69 ~~~~ittp~pY~NG~~HiGHa~~~~~a--Dv---iaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~ 143 (616)
T PLN02224 69 DTFVLTTPLYYVNAPPHMGSAYTTIAA--DS---IARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQS 143 (616)
T ss_pred CeEEEeCCCCCCCCCCchhccHHHHHH--HH---HHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHH
Confidence 346777777 78899999998765432 21 11332 34788754 466888732 1 1233 556667777
Q ss_pred HHHHHHHcCccCC
Q 014464 143 TAAIYLACGIDNS 155 (424)
Q Consensus 143 ~~~~~lA~GlDp~ 155 (424)
+.+.+.++|++++
T Consensus 144 ~~~~~~~l~I~~D 156 (616)
T PLN02224 144 YRTLWKDLDIAYD 156 (616)
T ss_pred HHHHHHHcCCCCC
Confidence 7888899999887
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=89.66 E-value=0.83 Score=50.93 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEEe-ccceecC-------CCCH-HHHHHHHHHH
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFIV-DLHAITL-------PYDT-QQLSKATRET 143 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~Ia-DlhA~t~-------~~~~-~~i~~~~~~~ 143 (424)
+..|-|++ -|+|.+||||....+.. ++ +.+|+ ..|++|+++-+ |-|..-. ..++ +...+++..+
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~a--Dv---~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~ 77 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQA--DI---WVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEH 77 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHH--HH---HHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677777 68999999998754432 22 12433 34788866644 5454321 1244 4455667788
Q ss_pred HHHHHHcCccCCceEEEEcCCcchh
Q 014464 144 AAIYLACGIDNSKASVFVQSHVRAH 168 (424)
Q Consensus 144 ~~~~lA~GlDp~k~~if~QS~v~~~ 168 (424)
.++|.++|++++. |..+.-++|
T Consensus 78 ~~~~~~l~i~~d~---f~rtt~~~h 99 (673)
T PRK00133 78 KRDFAGFGISFDN---YGSTHSEEN 99 (673)
T ss_pred HHHHHHhCCCCCC---CccCCcHHH
Confidence 8899999998763 444443444
No 68
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=86.62 E-value=1.8 Score=45.10 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=43.9
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceE-EEEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGI 152 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~Gl 152 (424)
-|.|.+||||....+.- +. ..+|+ +.|++| ++.-.|-|..-. ..+|+ -..++...+.+.|.++||
T Consensus 9 Y~Ng~lHlGH~~~~l~A--Dv---~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I 83 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAA--DV---LARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNI 83 (391)
T ss_dssp ETSSS-BHHHHHHHHHH--HH---HHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCCCCChhHHHHHH--HH---HHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 37899999997643321 11 11333 347887 455789998753 13564 455666778888999999
Q ss_pred cCCceEEEEcCCcchh
Q 014464 153 DNSKASVFVQSHVRAH 168 (424)
Q Consensus 153 Dp~k~~if~QS~v~~~ 168 (424)
+.+ .|.++.-++|
T Consensus 84 ~~D---~F~rTt~~~h 96 (391)
T PF09334_consen 84 SYD---RFIRTTDDRH 96 (391)
T ss_dssp --S---EEEETTSHHH
T ss_pred CCc---ceeCCCCHHH
Confidence 987 4666554444
No 69
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=86.39 E-value=1.8 Score=46.94 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=46.9
Q ss_pred ceEEEecCCC--CcchhhhhHHH-HHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCH-HHHHHHHHH
Q 014464 76 KRIVSGVQPT--GSIHLGNYLGA-IKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRE 142 (424)
Q Consensus 76 ~~i~sGi~PT--G~lHLGnylga-i~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~i~~~~~~ 142 (424)
..+++.-=|+ |.+||||..+. +.. ++ +-+++ ..|++|++. -.|.|..-. ..++ +..++++..
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~--D~---~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~ 78 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPA--DV---FARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEE 78 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHH--HH---HHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455555566 99999998875 321 11 11222 247887655 456665432 1244 444667778
Q ss_pred HHHHHHHcCccCCc
Q 014464 143 TAAIYLACGIDNSK 156 (424)
Q Consensus 143 ~~~~~lA~GlDp~k 156 (424)
+.+++.++|++++.
T Consensus 79 ~~~~~~~l~i~~d~ 92 (556)
T PRK12268 79 HKEDFKKLGISYDL 92 (556)
T ss_pred HHHHHHHcCCcCCC
Confidence 88999999999873
No 70
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.69 E-value=1 Score=52.10 Aligned_cols=59 Identities=27% Similarity=0.264 Sum_probs=35.5
Q ss_pred hccccceEecccchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 218 LLYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~---~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
..+-+|+...|.||. .|-.+-..++- .| .+.|..++.- .++... +| +|||||.
T Consensus 542 ~~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl- 597 (912)
T PRK05743 542 LGYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL- 597 (912)
T ss_pred cCCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC-
Confidence 345689999999997 34445444443 23 1233444432 355554 56 7999997
Q ss_pred CCCceeec
Q 014464 295 SDQSRINL 302 (424)
Q Consensus 295 ~~~s~I~L 302 (424)
+|.|..
T Consensus 598 --GNvIdP 603 (912)
T PRK05743 598 --GNVIDP 603 (912)
T ss_pred --CCcCCH
Confidence 566653
No 71
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.60 E-value=2.9 Score=45.27 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=42.5
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCce-EEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCc
Q 014464 77 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGI 152 (424)
Q Consensus 77 ~i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~-~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~Gl 152 (424)
.|.+-| +|||.+||||.-.|+.|+.. |..++ -.|.-=|. |+|. +-++..+ .+..++--+||
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYf---------a~~~~G~LIvRFDD---TNPaKE~~eFe~---~IleDl~~LgI 264 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYF---------AQAYQGKLIVRFDD---TNPAKENEEFED---VILEDLSLLGI 264 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHH---------HHhcCceEEEEecC---CCcchhhHHHHH---HHHHHHHHhCc
Confidence 444544 77899999999877777654 44332 23333343 3332 3334443 34455556799
Q ss_pred cCCceEEEEcCCcc
Q 014464 153 DNSKASVFVQSHVR 166 (424)
Q Consensus 153 Dp~k~~if~QS~v~ 166 (424)
.|++++. -||+.
T Consensus 265 kpd~~Ty--TSDyF 276 (712)
T KOG1147|consen 265 KPDRVTY--TSDYF 276 (712)
T ss_pred Ccceeee--chhhH
Confidence 9997543 46653
No 72
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.39 E-value=3.5 Score=45.16 Aligned_cols=77 Identities=21% Similarity=0.320 Sum_probs=48.1
Q ss_pred CCCCcchhhhhHHHHHH--HHHhccccccccccCceEE-EEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcC
Q 014464 83 QPTGSIHLGNYLGAIKN--WIALQPFCDLMLQNSYETL-FFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACG 151 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~--~~~l~~~~~~~~Q~~~~~~-i~IaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~G 151 (424)
-|.|.+||||....|.- |..++ ...|++|+ ++-.|-|..-. ..+|+ .+.++......+|.+++
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~------Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~ 88 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYL------RLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALN 88 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHH------HhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 46799999998655543 33331 13488874 45668887532 23564 45566677888999999
Q ss_pred ccCCceEEEEcCCcchh
Q 014464 152 IDNSKASVFVQSHVRAH 168 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~ 168 (424)
|+-+ .|..+.-+.|
T Consensus 89 IsfD---~F~rTt~~~h 102 (558)
T COG0143 89 ISFD---NFIRTTSPEH 102 (558)
T ss_pred Cccc---ccccCCCHHH
Confidence 8765 3444444444
No 73
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=81.92 E-value=1.4 Score=44.93 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=23.6
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEE-EEEecccee
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETL-FFIVDLHAI 127 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~-i~IaDlhA~ 127 (424)
|+|.+||||..+.+-. ++ +.+++ ..|++|+ +.-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~--Dv---l~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILK--DI---INRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHH--HH---HHHHHHhcCCccCCcCCcCCCCc
Confidence 4699999999875432 22 22333 2377874 445676665
No 74
>PLN02610 probable methionyl-tRNA synthetase
Probab=79.55 E-value=3.1 Score=47.46 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=50.8
Q ss_pred CceEEEec-CCCCcchhhhhHHH-HH--HHHHhccccccccccCceEEEE-EeccceecC-------CCCH-HHHHHHHH
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLGA-IK--NWIALQPFCDLMLQNSYETLFF-IVDLHAITL-------PYDT-QQLSKATR 141 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylga-i~--~~~~l~~~~~~~~Q~~~~~~i~-IaDlhA~t~-------~~~~-~~i~~~~~ 141 (424)
+..|-|.+ -|+|.+||||..|. +. -+... ....|++|+++ -.|-|..-. ..++ +...++..
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy------~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~ 91 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARY------CRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHA 91 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHH------HHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34444443 35699999999874 42 12222 01347887555 567787643 1245 44455566
Q ss_pred HHHHHHHHcCccCCceEEEEcCCcchhh
Q 014464 142 ETAAIYLACGIDNSKASVFVQSHVRAHV 169 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k~~if~QS~v~~~~ 169 (424)
.+...|.++||+.+. |..+.-++|.
T Consensus 92 ~~~~~~~~l~i~~D~---f~rT~~~~h~ 116 (801)
T PLN02610 92 IHKEVYDWFDISFDK---FGRTSTPQQT 116 (801)
T ss_pred HHHHHHHHcCCcccc---CccCCCHHHH
Confidence 777888999998873 3334444553
No 75
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=79.35 E-value=1.1 Score=51.54 Aligned_cols=58 Identities=31% Similarity=0.389 Sum_probs=33.7
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014464 220 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~-hieLaRdia~r~n~~--~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
|-+|+...|.||.. |+-+.. |++. ++. -+.|..++.. ..+.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999976 555542 3322 221 1334444432 24432 56 7999997
Q ss_pred CceeecC
Q 014464 297 QSRINLL 303 (424)
Q Consensus 297 ~s~I~L~ 303 (424)
+|.|.+.
T Consensus 583 GNvVdp~ 589 (897)
T PRK12300 583 GNVIPLR 589 (897)
T ss_pred CCCCCHH
Confidence 5777653
No 76
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=79.23 E-value=1 Score=48.11 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=39.2
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGI 152 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~~~~lA~Gl 152 (424)
-|+|.+||||....+. .++ +-++++ .|++|.+ +-.|.|..-. ..++ +..+.+...+.+++.++|+
T Consensus 11 ~~~g~~HiGh~~~~~~--~Dv---~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I 85 (511)
T PRK11893 11 YPNGKPHIGHAYTTLA--ADV---LARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNI 85 (511)
T ss_pred CCCCCcccchhHHHHH--HHH---HHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3469999999654332 122 223333 3778754 3456664311 1133 3445556677788889999
Q ss_pred cCC
Q 014464 153 DNS 155 (424)
Q Consensus 153 Dp~ 155 (424)
+++
T Consensus 86 ~~D 88 (511)
T PRK11893 86 SYD 88 (511)
T ss_pred CcC
Confidence 876
No 77
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=78.92 E-value=1.4 Score=45.78 Aligned_cols=60 Identities=28% Similarity=0.351 Sum_probs=33.8
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
+.+|+...|.||...+-.. .++.-.- ..| ..| ..++.- ..+.++ +| +|||||. +|
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn 350 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GN 350 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CC
Confidence 3579999999997644333 3333221 112 123 222211 355555 55 6999997 57
Q ss_pred eeecC
Q 014464 299 RINLL 303 (424)
Q Consensus 299 ~I~L~ 303 (424)
.|.+.
T Consensus 351 ~v~~~ 355 (382)
T cd00817 351 VIDPL 355 (382)
T ss_pred CCCHH
Confidence 77763
No 78
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=78.40 E-value=1.7 Score=47.51 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=41.5
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCcee-cCCCCcccccCCCCCCccccCCCCCCceee
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL-IPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l-~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
-+-.+|.||..|+.-...++..++ ++.|.-+ +... .+| .+ .|||||. |+.|.
T Consensus 330 iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~~~-~~V----~~-~kmSkr~---Gn~V~ 382 (566)
T TIGR00456 330 MIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHLNF-GMV----PL-GSMKTRR---GNVIS 382 (566)
T ss_pred EEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEEEE-EEE----EC-CCCCccC---Cceee
Confidence 356799999999999999999865 3334222 2111 122 23 5999997 68999
Q ss_pred cCCCHHHHHH
Q 014464 302 LLDPKDVIAN 311 (424)
Q Consensus 302 L~D~~e~I~k 311 (424)
+.|=.++..+
T Consensus 383 ~~dll~~~~~ 392 (566)
T TIGR00456 383 LDNLLDEASK 392 (566)
T ss_pred HHHHHHHHHH
Confidence 9865555444
No 79
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=77.31 E-value=1.8 Score=50.75 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=38.3
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
+-+|+...|.||. ++=++|-++.-+.. .| ..| ..++.. .+|..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~-~~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHF-MG---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHh-cC---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4578999999998 45677777765542 12 234 333322 255443 45 7999998 57
Q ss_pred eeecCC
Q 014464 299 RINLLD 304 (424)
Q Consensus 299 ~I~L~D 304 (424)
.|+..|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 877654
No 80
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=76.69 E-value=1.6 Score=50.65 Aligned_cols=59 Identities=27% Similarity=0.387 Sum_probs=34.0
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014464 220 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~-hieLaRdia~r~n~~--~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
|-+|+...|.||.+ |+.+. + |++. ++. . +-|..++.. ..|.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i---~~~~a~~~~-----------~--~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--I---FHHVAIFPE-----------K--FWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHH--H---HHHHHcCCc-----------c--ccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 66544 2 2221 121 0 124444332 23332 56 7999997
Q ss_pred CceeecCC
Q 014464 297 QSRINLLD 304 (424)
Q Consensus 297 ~s~I~L~D 304 (424)
+|.|.+.|
T Consensus 626 GNvI~p~d 633 (938)
T TIGR00395 626 GNVLTLEQ 633 (938)
T ss_pred CCCCCHHH
Confidence 57777643
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=76.51 E-value=3.7 Score=41.42 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=41.7
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEE-EEeccceecC-------CCCHHHH-HHHHHHHHHHHHHcCcc
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYDTQQL-SKATRETAAIYLACGID 153 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~~~~i-~~~~~~~~~~~lA~GlD 153 (424)
|+|.+||||..+.+-. ++ ..+++ ..|++|.+ .-.|.|..-. ..+++++ +.+...+.+++.++|++
T Consensus 11 ~ng~~HlGH~~~~~~~--Dv---~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 85 (319)
T cd00814 11 VNGVPHLGHLYGTVLA--DV---FARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNIS 85 (319)
T ss_pred CCCCcchhhHHHHHHH--HH---HHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc
Confidence 4599999999886543 22 12443 23777754 4557775432 1245444 44555777888899998
Q ss_pred CCc
Q 014464 154 NSK 156 (424)
Q Consensus 154 p~k 156 (424)
++.
T Consensus 86 ~D~ 88 (319)
T cd00814 86 FDY 88 (319)
T ss_pred CCC
Confidence 774
No 82
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=75.23 E-value=7.8 Score=44.30 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=47.7
Q ss_pred CceEEEecCCC--CcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCC-HHHHHHHHHH
Q 014464 75 KKRIVSGVQPT--GSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYD-TQQLSKATRE 142 (424)
Q Consensus 75 ~~~i~sGi~PT--G~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~-~~~i~~~~~~ 142 (424)
+..+++|. |+ |.+|+||.++-+.. ++ +-+|. ..|++|.+. -.|-|.+-. ..+ .+-..+++..
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~--Di---i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~ 106 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIG--DV---IARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIAN 106 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHH--HH---HHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57777776 77 99999998864432 22 11221 347887544 557776532 113 3455667778
Q ss_pred HHHHHHHcCccCC
Q 014464 143 TAAIYLACGIDNS 155 (424)
Q Consensus 143 ~~~~~lA~GlDp~ 155 (424)
+...+.++|+..+
T Consensus 107 ~~~~~~~lGi~~D 119 (805)
T PRK00390 107 MKKQLKSLGFSYD 119 (805)
T ss_pred HHHHHHHhCCccc
Confidence 8888999999655
No 83
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=74.79 E-value=2.2 Score=48.99 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.8
Q ss_pred cccceEecccchHH
Q 014464 220 YQSDFVPVGEDQKQ 233 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~ 233 (424)
+-+|+...|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 44799999999965
No 84
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=74.72 E-value=7.7 Score=41.41 Aligned_cols=60 Identities=27% Similarity=0.343 Sum_probs=35.6
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
+.+|+...|.||...+-.. .+|.-.. .| .+.|..++.. .++. + +| +|||||. +|.
T Consensus 253 ~~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~ 307 (511)
T PRK11893 253 WPADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNV 307 (511)
T ss_pred CCCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcE
Confidence 3578999999998853221 1222211 12 2456555543 2443 4 66 7999997 688
Q ss_pred eecCC
Q 014464 300 INLLD 304 (424)
Q Consensus 300 I~L~D 304 (424)
|.+.|
T Consensus 308 i~~~d 312 (511)
T PRK11893 308 IDPFD 312 (511)
T ss_pred EcHHH
Confidence 88743
No 85
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=74.45 E-value=30 Score=38.47 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceE-EEEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCcc
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYET-LFFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGID 153 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~-~i~IaDlhA~t~-------~~~~~-~i~~~~~~~~~~~lA~GlD 153 (424)
|+|.+||||..+.+.. ++ +.+++ ..|++| +++-.|.|..-. ..+++ -...+...+..+|.++|++
T Consensus 15 ~ng~~HiGH~~~~~~a--Dv---~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~ 89 (648)
T PRK12267 15 PNGKPHIGHAYTTIAA--DA---LARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDIS 89 (648)
T ss_pred CCCCcccccchHHHHH--HH---HHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 4599999998654432 21 12333 347776 445677776532 12443 3445555677778888887
Q ss_pred CC
Q 014464 154 NS 155 (424)
Q Consensus 154 p~ 155 (424)
++
T Consensus 90 ~D 91 (648)
T PRK12267 90 YD 91 (648)
T ss_pred CC
Confidence 65
No 86
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=72.44 E-value=6.3 Score=43.73 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=33.4
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCcee
Q 014464 221 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 300 (424)
Q Consensus 221 ~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 300 (424)
.+|+...|.||..++-+-= .-+-...| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 3678889999987543310 00000012 4567665543 1332 2 45 7999997 5788
Q ss_pred ecCC
Q 014464 301 NLLD 304 (424)
Q Consensus 301 ~L~D 304 (424)
+..|
T Consensus 309 ~p~d 312 (648)
T PRK12267 309 DPEE 312 (648)
T ss_pred CHHH
Confidence 7644
No 87
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=71.14 E-value=6.1 Score=42.61 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCcc
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGID 153 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~GlD 153 (424)
|+|.+||||....+. .++ ..+++ ..|++|.+. -.|.|..-. ..++.+ .+.+...+.+++.++|++
T Consensus 10 ~ng~lHiGH~~~~~~--aDv---l~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~ 84 (530)
T TIGR00398 10 ANGKPHLGHAYTTIL--ADV---YARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNIS 84 (530)
T ss_pred CCCCcccchhHHHHH--HHH---HHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 789999999874432 122 12333 237887554 445554321 124433 344556777888899987
Q ss_pred CCc
Q 014464 154 NSK 156 (424)
Q Consensus 154 p~k 156 (424)
++.
T Consensus 85 ~D~ 87 (530)
T TIGR00398 85 FDR 87 (530)
T ss_pred CCC
Confidence 653
No 88
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=70.69 E-value=3.9 Score=42.75 Aligned_cols=70 Identities=26% Similarity=0.239 Sum_probs=42.5
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014464 210 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 288 (424)
Q Consensus 210 PvLQAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 288 (424)
..-|+..+|--.-|+--+|.|-. +|+|- ++|+..- .+|+. +-+...+.. -+... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~a-~~g~~-------------~~~~~w~H~---g~l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGER-------------RFARHYVHA---GMIGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECC-CC-Cc
Confidence 46788888887889999999965 66654 4444321 13420 122344433 22233 56 79
Q ss_pred cccCCCCCCceeecC
Q 014464 289 MSKSAPSDQSRINLL 303 (424)
Q Consensus 289 MSKS~p~~~s~I~L~ 303 (424)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99997 5777764
No 89
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=70.44 E-value=2.8 Score=48.82 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hccccceEecccchHH
Q 014464 218 LLYQSDFVPVGEDQKQ 233 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~~ 233 (424)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 90
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=70.32 E-value=2.9 Score=48.06 Aligned_cols=62 Identities=27% Similarity=0.355 Sum_probs=37.5
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 219 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 219 ~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
.|-+|+...|.||... =++|-++..... .| ..| ..++.. ..|-.. +| +|||||. |
T Consensus 471 ~~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 471 FYPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred cCCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---C
Confidence 3457899999999874 566666554321 12 245 222221 355554 56 7999997 5
Q ss_pred ceeecCC
Q 014464 298 SRINLLD 304 (424)
Q Consensus 298 s~I~L~D 304 (424)
|.|...|
T Consensus 527 NvIdP~d 533 (874)
T PRK05729 527 NVIDPLD 533 (874)
T ss_pred CCCCHHH
Confidence 7776543
No 91
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=69.99 E-value=3.6 Score=45.26 Aligned_cols=60 Identities=32% Similarity=0.400 Sum_probs=30.4
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
|-+|+..-|.||.... +.+-+....- .++. ..| +..++. .+|... +| +|||||. +|.
T Consensus 513 ~P~D~~~~G~D~~~~W-~~~~l~~~~~-l~~~-----------~pf--k~v~~h---G~vld~-~G-~KMSKS~---GNv 569 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGW-FQSSLFLSVA-LFGK-----------EPF--KKVITH---GFVLDE-DG-RKMSKSK---GNV 569 (601)
T ss_dssp SSBSEEEEEGGGTTTH-HHHHHHHHHH-HSSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB-
T ss_pred CCcccccCCccchhhH-HHHhHhhccc-cccC-----------Cch--heeeec---cccccc-ce-eecccCC---Ccc
Confidence 5689999999997654 2222222111 1232 123 233332 355554 56 7999997 577
Q ss_pred eec
Q 014464 300 INL 302 (424)
Q Consensus 300 I~L 302 (424)
|.+
T Consensus 570 i~p 572 (601)
T PF00133_consen 570 IDP 572 (601)
T ss_dssp -BH
T ss_pred cCH
Confidence 654
No 92
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=67.49 E-value=4.9 Score=45.77 Aligned_cols=59 Identities=29% Similarity=0.348 Sum_probs=32.7
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 221 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 221 ~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
-+|+...|.||... -+.+-++...- .+| ..| ..++.. ..+... +| +|||||. +|.
T Consensus 486 P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIRT-WLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GNV 541 (800)
T ss_pred CceEEEeecchhhh-HHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CCC
Confidence 47899999999853 23334433221 122 123 223221 345444 55 7999997 577
Q ss_pred eecC
Q 014464 300 INLL 303 (424)
Q Consensus 300 I~L~ 303 (424)
|.+.
T Consensus 542 i~p~ 545 (800)
T PRK13208 542 VTPE 545 (800)
T ss_pred CCHH
Confidence 7653
No 93
>PLN02943 aminoacyl-tRNA ligase
Probab=66.18 E-value=5.4 Score=46.48 Aligned_cols=76 Identities=25% Similarity=0.379 Sum_probs=42.5
Q ss_pred ccchhhhHHHHhhh-hccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--eecCCCCcccc
Q 014464 204 VALLTYPVLMASDI-LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVM 280 (424)
Q Consensus 204 ~g~l~YPvLQAADI-l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~--~l~~~~~~~l~ 280 (424)
+..+.||-....+. ..|-+|+...|.||. .+=++|-++.-.. ..| ..|. .+++ ..+.
T Consensus 518 ~s~lgwp~~~~~~~~~~yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~h---g~v~ 577 (958)
T PLN02943 518 FSTLGWPDVSAEDFKKFYPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLH---GLIR 577 (958)
T ss_pred HHhcCCCccChHHHhccCCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEe---ccEE
Confidence 33444654322222 235579999999998 4677776664221 112 2342 2222 2444
Q ss_pred cCCCCCCccccCCCCCCceeecCC
Q 014464 281 SLTDGLSKMSKSAPSDQSRINLLD 304 (424)
Q Consensus 281 ~L~dg~~KMSKS~p~~~s~I~L~D 304 (424)
.. +| +|||||. ||.|...|
T Consensus 578 ~~-~G-~KMSKS~---GN~i~p~~ 596 (958)
T PLN02943 578 DS-QG-RKMSKTL---GNVIDPLD 596 (958)
T ss_pred CC-CC-CcccCcC---CCCCCHHH
Confidence 43 55 7999997 57777643
No 94
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=66.06 E-value=10 Score=43.52 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=44.6
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEE-eccceecC-------CC-CHHHHHHHHHHHH
Q 014464 76 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFI-VDLHAITL-------PY-DTQQLSKATRETA 144 (424)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~I-aDlhA~t~-------~~-~~~~i~~~~~~~~ 144 (424)
..+++|+ -|||.+|+||.++-+.. ++ +-+|. ..|++|.+.. -|-|.+-. .. ..+...+++..+.
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~--Dv---i~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~ 105 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTIT--DV---LSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMK 105 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHH--HH---HHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4555552 23599999998764322 22 11222 3588886554 46665521 11 2355666777888
Q ss_pred HHHHHcCccCC
Q 014464 145 AIYLACGIDNS 155 (424)
Q Consensus 145 ~~~lA~GlDp~ 155 (424)
..+.++|+..+
T Consensus 106 ~~~~~lG~~~D 116 (842)
T TIGR00396 106 KQLQALGFSYD 116 (842)
T ss_pred HHHHHhCCccc
Confidence 88999997654
No 95
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=65.63 E-value=27 Score=37.83 Aligned_cols=76 Identities=16% Similarity=0.087 Sum_probs=44.9
Q ss_pred CceEEE-ecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE--EeccceecC----------------CCCH-
Q 014464 75 KKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAITL----------------PYDT- 133 (424)
Q Consensus 75 ~~~i~s-Gi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t~----------------~~~~- 133 (424)
.+++|+ |.-+-+.+||||....+. .++ +.++++. |++|++. |+|.--+|. ..++
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~--~Dv---l~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~ 97 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVF--QDT---LRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVL 97 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHH--HHH---HHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHH
Confidence 455554 777779999999875432 121 2344443 7888766 677721221 1133
Q ss_pred HHHHHHHHHHHHHHHHcCccCC
Q 014464 134 QQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 134 ~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
+..+.++..+..++.++|+.+.
T Consensus 98 e~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 98 EIAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3334555677788889998754
No 96
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=65.59 E-value=5 Score=46.06 Aligned_cols=61 Identities=31% Similarity=0.400 Sum_probs=35.5
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
|-+|+...|.||.... ++|-++.-.. ..| +.| ..++.. ..|... +| +|||||. +|
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---GN 532 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---GN 532 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---CC
Confidence 5679999999998764 4455543221 112 234 222221 255544 45 7999998 57
Q ss_pred eeecCC
Q 014464 299 RINLLD 304 (424)
Q Consensus 299 ~I~L~D 304 (424)
.|.+.|
T Consensus 533 ~i~p~~ 538 (861)
T TIGR00422 533 VIDPLD 538 (861)
T ss_pred CCCHHH
Confidence 776543
No 97
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=65.51 E-value=4.6 Score=40.71 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=32.8
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCcee
Q 014464 221 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 300 (424)
Q Consensus 221 ~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 300 (424)
..++..+|.|+..++-+.- .|--.. .| .+.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3578899999998754321 111111 11 3445544432 122 33 45 6999997 5788
Q ss_pred ecC
Q 014464 301 NLL 303 (424)
Q Consensus 301 ~L~ 303 (424)
.+.
T Consensus 290 ~~~ 292 (319)
T cd00814 290 DPD 292 (319)
T ss_pred CHH
Confidence 773
No 98
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=65.28 E-value=5.3 Score=46.63 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=12.8
Q ss_pred ccccceEecccchHHH
Q 014464 219 LYQSDFVPVGEDQKQH 234 (424)
Q Consensus 219 ~~~ad~vpvG~DQ~~h 234 (424)
.+-+|+...|.||...
T Consensus 543 ~~Pad~~~~G~Di~r~ 558 (975)
T PRK06039 543 HFPADFIVEGIDQTRG 558 (975)
T ss_pred cCCceEEEechhhHhh
Confidence 3568999999999753
No 99
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=64.46 E-value=6.8 Score=39.92 Aligned_cols=58 Identities=31% Similarity=0.377 Sum_probs=32.0
Q ss_pred cccceEecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014464 220 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~---hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
+.+|+.+.|.||.. |-.+..-++ .+|. ..|..+... ..+... +| +|||||.
T Consensus 251 ~p~d~~~~GkDii~~wf~~~~~~~~~-----~~~~--------------~p~~~~~~h--g~~~~~-~g-~KmSKS~--- 304 (338)
T cd00818 251 FPADFILEGSDQTRGWFYSLLLLSTA-----LFGK--------------APYKNVIVH--GFVLDE-DG-RKMSKSL--- 304 (338)
T ss_pred CCCeEEeecchHHhHHHHHHHHHHHH-----hcCC--------------CccceEEEE--eeEECC-CC-CCCCCCC---
Confidence 34789999999975 333322221 1221 122333322 244333 56 6999997
Q ss_pred CceeecC
Q 014464 297 QSRINLL 303 (424)
Q Consensus 297 ~s~I~L~ 303 (424)
+|.|++.
T Consensus 305 gn~i~~~ 311 (338)
T cd00818 305 GNYVDPQ 311 (338)
T ss_pred CCcCCHH
Confidence 6788774
No 100
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=63.59 E-value=50 Score=37.22 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=44.2
Q ss_pred CCceEEE-ecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE--Eeccce-ecC-----CCCHH-HHHHHHHH
Q 014464 74 VKKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHA-ITL-----PYDTQ-QLSKATRE 142 (424)
Q Consensus 74 ~~~~i~s-Gi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA-~t~-----~~~~~-~i~~~~~~ 142 (424)
..+++|+ |.-+=+.+||||....+. .++ +.++++. |++|++. +.|.-- ++. ..++. ..+.++..
T Consensus 247 ~~V~mYvCGPTVYd~~HIGHaRt~V~--~DV---L~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 247 ENVRMYVCGMTVYDYCHLGHARVMVV--FDM---IARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred CceEEEecCCcCCCCCcccchhHHHH--HHH---HHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3455554 766668899999875442 122 2344444 7887655 223211 111 12443 44556667
Q ss_pred HHHHHHHcCccCCc
Q 014464 143 TAAIYLACGIDNSK 156 (424)
Q Consensus 143 ~~~~~lA~GlDp~k 156 (424)
+..++.++|+.+..
T Consensus 322 F~~d~~~LnI~~p~ 335 (699)
T PRK14535 322 MHEDADALGVLRPD 335 (699)
T ss_pred HHHHHHHcCCCCCc
Confidence 78888899987653
No 101
>PLN02843 isoleucyl-tRNA synthetase
Probab=63.15 E-value=5.4 Score=46.59 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.6
Q ss_pred hccccceEecccchHH
Q 014464 218 LLYQSDFVPVGEDQKQ 233 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~~ 233 (424)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999987
No 102
>PLN02381 valyl-tRNA synthetase
Probab=63.10 E-value=6 Score=46.63 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=37.8
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--eecCCCCcccccCCCCCCccccCCCCC
Q 014464 219 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 219 ~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~--~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
.|-+|+..-|.||. ++=++|-++.-+-. .| ..|. .+++ .+|-+- +| +|||||.
T Consensus 606 ~~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~--- 660 (1066)
T PLN02381 606 FYPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL--- 660 (1066)
T ss_pred cCCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---
Confidence 35689999999998 56677777654321 12 2332 2222 366654 56 7999998
Q ss_pred CceeecC
Q 014464 297 QSRINLL 303 (424)
Q Consensus 297 ~s~I~L~ 303 (424)
||.|...
T Consensus 661 GNvIdP~ 667 (1066)
T PLN02381 661 GNVIDPL 667 (1066)
T ss_pred CCCCCHH
Confidence 5777543
No 103
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.38 E-value=18 Score=41.38 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=52.0
Q ss_pred CCceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEEeccceecCC---------CCH-HHHHHHHH
Q 014464 74 VKKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFIVDLHAITLP---------YDT-QQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~IaDlhA~t~~---------~~~-~~i~~~~~ 141 (424)
.++.|..-+ -|||.+|+||..+-... +. +-+|. ..|++|.+-++ |||+=.| .+| .-...++.
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~--Dv---~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~ 107 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIG--DV---IARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIA 107 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHH--HH---HHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHH
Confidence 456666655 58999999996432111 11 00111 34889887774 8887443 244 45567788
Q ss_pred HHHHHHHHcCccCCceEEEEcCC
Q 014464 142 ETAAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k~~if~QS~ 164 (424)
++...+.++|+.-|=..=|.=.|
T Consensus 108 ~~k~qlk~lG~siDW~Ref~T~D 130 (814)
T COG0495 108 YMKKQLKSLGFSIDWRREFATCD 130 (814)
T ss_pred HHHHHHHHhCCccccccceecCC
Confidence 88889999998766444443333
No 104
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.23 E-value=56 Score=37.57 Aligned_cols=63 Identities=25% Similarity=0.160 Sum_probs=34.6
Q ss_pred ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCce---ecCCCCcccccCCCCCCccccCCCCCC
Q 014464 221 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP---LIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 221 ~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~---l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
=.|+-.+|.|+...+-|- -||+++.-- ..| ..+..++ |++. .+|.+- +| +|||||. +
T Consensus 526 PVD~yigG~ehavlHLly----~rF~Hkal~----d~g-----~~p~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLY----FRFFHKALF----DEG-----LVPKDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHHH----HHHHHHHhc----ccC-----cCCCccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 478999999998866442 345554210 011 1222221 3333 355553 45 6999998 4
Q ss_pred ceeecC
Q 014464 298 SRINLL 303 (424)
Q Consensus 298 s~I~L~ 303 (424)
|.|.+.
T Consensus 586 N~v~p~ 591 (814)
T COG0495 586 NVVDPE 591 (814)
T ss_pred CCCCHH
Confidence 666543
No 105
>PLN02959 aminoacyl-tRNA ligase
Probab=61.70 E-value=7.6 Score=45.90 Aligned_cols=59 Identities=27% Similarity=0.269 Sum_probs=33.3
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~--~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
|=.|+..-|.||....- +.-+ +++. +|+ -+-|..++.. ..|. + +| +|||||. |
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---G 724 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---G 724 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---C
Confidence 55899999999977642 3333 2221 221 1223323222 2333 3 66 7999997 5
Q ss_pred ceeecC
Q 014464 298 SRINLL 303 (424)
Q Consensus 298 s~I~L~ 303 (424)
|.|.+.
T Consensus 725 NvI~p~ 730 (1084)
T PLN02959 725 NFLTLR 730 (1084)
T ss_pred CcCCHH
Confidence 777654
No 106
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=61.57 E-value=6.7 Score=41.37 Aligned_cols=74 Identities=14% Similarity=0.097 Sum_probs=42.3
Q ss_pred CceE-EEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEE-eccce--ecC-----CCCHH-HHHHHHHHH
Q 014464 75 KKRI-VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFI-VDLHA--ITL-----PYDTQ-QLSKATRET 143 (424)
Q Consensus 75 ~~~i-~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~I-aDlhA--~t~-----~~~~~-~i~~~~~~~ 143 (424)
.+++ .+|--|=+.+||||..+.+. .++ +.+|++. |++|+++. .|.|. ++. ..+++ ..+.++...
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~--~Dv---l~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f 110 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLT--FDL---VNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLF 110 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHH--HHH---HHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444 45777779999999876442 222 2234333 78886553 23331 111 12453 445566677
Q ss_pred HHHHHHcCcc
Q 014464 144 AAIYLACGID 153 (424)
Q Consensus 144 ~~~~lA~GlD 153 (424)
..++.++|+.
T Consensus 111 ~~d~~~Lni~ 120 (411)
T TIGR03447 111 REDMEALRVL 120 (411)
T ss_pred HHHHHHcCCC
Confidence 7888888864
No 107
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=60.95 E-value=7.9 Score=45.26 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=37.2
Q ss_pred ccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCC
Q 014464 219 LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 219 ~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
.|-+|+...|.||.. +=++|-++.-+.. .| +.|- .++.- .+|-+- +| +|||||. |
T Consensus 536 ~~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H--G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 536 FFPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH--AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred cCCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc--ceEECC-CC-CCcccCC---C
Confidence 356899999999876 5566666655321 11 3452 23321 355553 56 7999997 5
Q ss_pred ceeecC
Q 014464 298 SRINLL 303 (424)
Q Consensus 298 s~I~L~ 303 (424)
|.|...
T Consensus 592 NvIdP~ 597 (995)
T PTZ00419 592 NVIDPL 597 (995)
T ss_pred CcCChH
Confidence 777543
No 108
>PLN02882 aminoacyl-tRNA ligase
Probab=59.66 E-value=8.6 Score=45.78 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=41.3
Q ss_pred ccccchhhhHHHHhhhh--ccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCccc
Q 014464 202 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARV 279 (424)
Q Consensus 202 ~~~g~l~YPvLQAADIl--~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l 279 (424)
.+++.+-||- ..-+.+ .+=+|+..-|.||..-. +.+-++...- .+|. +.|.-++.. ..+
T Consensus 547 ~p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~--------------~pfk~Vivh--G~v 607 (1159)
T PLN02882 547 MPYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFDK--------------PAFKNLICN--GLV 607 (1159)
T ss_pred cHHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcCC--------------CCcceeEEc--cEE
Confidence 4566666773 112211 24599999999999864 4444444322 1332 233333322 233
Q ss_pred ccCCCCCCccccCCCCCCceee
Q 014464 280 MSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 280 ~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
..= +| +|||||. +|.|.
T Consensus 608 lde-~G-~KMSKSl---GNvId 624 (1159)
T PLN02882 608 LAE-DG-KKMSKSL---KNYPD 624 (1159)
T ss_pred ECC-CC-CCcccCC---CCCCC
Confidence 321 45 7999997 56664
No 109
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.44 E-value=33 Score=39.98 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=17.6
Q ss_pred ccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 014464 278 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 313 (424)
Q Consensus 278 ~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI 313 (424)
++..- +| +|||||. +|.| +|.+|.+|.
T Consensus 594 fvlDe-~G-rKMSKSl---GN~v----~P~~V~~~y 620 (933)
T COG0060 594 FVLDE-KG-RKMSKSL---GNVV----DPQDVIDKY 620 (933)
T ss_pred cEECC-CC-CCccccC---CCcC----CHHHHHHhh
Confidence 55554 45 7999998 4555 466666653
No 110
>PLN02286 arginine-tRNA ligase
Probab=58.33 E-value=12 Score=41.11 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=41.0
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
-+-.+|.||..|+.-...+++.++.... ..-..-+++.. .+|-++ +| +||||-. |+.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4556899999999999999998763100 00001112221 366444 55 6999885 689998
Q ss_pred CCCHHH
Q 014464 303 LDPKDV 308 (424)
Q Consensus 303 ~D~~e~ 308 (424)
.|==++
T Consensus 390 ~dllde 395 (576)
T PLN02286 390 VDLLDE 395 (576)
T ss_pred HHHHHH
Confidence 764443
No 111
>PLN02660 pantoate--beta-alanine ligase
Probab=56.63 E-value=39 Score=34.00 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=47.5
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
.++|....|.-..|-+.+.|.+++.+| | |.-++.- +.+-- .||- =||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~------------------~--~v~I~~~--ptvRe-~dGL-A~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLD------------------F--DIEVVGS--PIVRE-ADGL-AMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcC------------------C--CceEEee--CceEC-CCCC-eecccc------
Confidence 389999999999999999999999877 2 2222221 12222 2553 677653
Q ss_pred eecCCCHHHHHHHhhhccC
Q 014464 300 INLLDPKDVIANKIKRCKT 318 (424)
Q Consensus 300 I~L~D~~e~I~kKI~kA~T 318 (424)
.||+++..+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 6788777777777777665
No 112
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.27 E-value=11 Score=41.67 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=44.6
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCceee
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
-+--+|.||.+|+.-.+-+++..+. + .+. .+.... -.++...+| .||||-. ++.|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~--~----------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~vt 393 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGY--G----------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVVT 393 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcC--C----------------CccceEEEEE-EeeeECCCC-ccccccC---CceEE
Confidence 3557999999999999999888662 2 221 222110 123333233 6899997 68999
Q ss_pred cCCCHHHHHHHh
Q 014464 302 LLDPKDVIANKI 313 (424)
Q Consensus 302 L~D~~e~I~kKI 313 (424)
|.|=-+++.+|-
T Consensus 394 l~dllde~~era 405 (577)
T COG0018 394 LDDLLDEAGERA 405 (577)
T ss_pred HHHHHHHHHHHh
Confidence 988777777443
No 113
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=56.25 E-value=7.9 Score=42.01 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=31.9
Q ss_pred ceEecccchHHHHHH-HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014464 223 DFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 223 d~vpvG~DQ~~hieL-aRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
++...|.|+...+.+ ---+..-. | ..++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~----~------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGS----G------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhc----C------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 478889999864432 22222111 1 114566655543 2443 3 56 7999998 57776
Q ss_pred cC
Q 014464 302 LL 303 (424)
Q Consensus 302 L~ 303 (424)
..
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 54
No 114
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=56.13 E-value=1.3e+02 Score=26.78 Aligned_cols=87 Identities=13% Similarity=0.220 Sum_probs=61.2
Q ss_pred CccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Q 014464 332 PECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADAT 411 (424)
Q Consensus 332 pe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~IL~~Ga~kAr~iA~~T 411 (424)
++.+|+--.++++++.++. ...+|.. ..++++.+.++|...+..+.+.|......-..+-.-+.+..++.+.+ .+.
T Consensus 19 ~~~~pv~~al~~ld~ss~g-~~~~~~~--f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K~~ 94 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVG-RAHRYQE--FEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-KES 94 (142)
T ss_pred CCCcHHHHHHHhcCCCCcc-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3456666666777665532 2333322 45678888888888888888888888777777777888888887776 778
Q ss_pred HHHHHHHcCCc
Q 014464 412 LNNVYQAMGFL 422 (424)
Q Consensus 412 l~~Vr~~~Gl~ 422 (424)
|...++.+|..
T Consensus 95 L~~ak~~L~~~ 105 (142)
T PF04048_consen 95 LQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHhcC
Confidence 88888887754
No 115
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=55.10 E-value=56 Score=30.41 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=38.3
Q ss_pred cCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCccCCceE
Q 014464 82 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKAS 158 (424)
Q Consensus 82 i~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA-~t--~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~ 158 (424)
||| +|+||.- +++...+ ..-+++|.|+.-.. -+ ++-+.++-.+.++.. +...|+|.+++.
T Consensus 8 F~P---~H~GHl~-~i~~a~~----------~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~ 70 (181)
T cd02168 8 FQP---FHNGHLA-VVLIALE----------KAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVH 70 (181)
T ss_pred cCC---CCHHHHH-HHHHHHH----------HCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEE
Confidence 555 8999974 3433222 22267777755422 12 122333333333322 234689999887
Q ss_pred EEEcCCcchhhHHHHH
Q 014464 159 VFVQSHVRAHVELMWL 174 (424)
Q Consensus 159 if~QS~v~~~~el~wi 174 (424)
|.-=.|+. ..+..|.
T Consensus 71 i~pi~D~~-~~~~~W~ 85 (181)
T cd02168 71 FRPLRDHL-YSDNLWL 85 (181)
T ss_pred EEecCCCC-CChHHHH
Confidence 77544432 2344564
No 116
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=55.01 E-value=11 Score=39.08 Aligned_cols=39 Identities=26% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEE-EEecccee
Q 014464 84 PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAI 127 (424)
Q Consensus 84 PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~ 127 (424)
|+|.+||||..+.+.. ++ +-+++ ..|++|++ .-.|-|.+
T Consensus 12 ~nG~lHiGH~~~~~~~--Dv---~~Ry~r~~G~~V~~~~G~D~hG~ 52 (382)
T cd00817 12 VTGSLHMGHALNNTIQ--DI---IARYKRMKGYNVLWPPGTDHAGI 52 (382)
T ss_pred CCCcchHHHHHHHHHH--HH---HHHHHHhcCCcccccCccCCCCC
Confidence 5799999998764432 22 11332 33777744 45677743
No 117
>PLN02563 aminoacyl-tRNA ligase
Probab=54.09 E-value=33 Score=40.24 Aligned_cols=76 Identities=14% Similarity=0.164 Sum_probs=45.1
Q ss_pred CceEEEec-CCCCc-chhhhhHHHHHHHHHhccccccc-cccCceEEEEE-eccceecC-------CCCH-HHHHHHHHH
Q 014464 75 KKRIVSGV-QPTGS-IHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFFI-VDLHAITL-------PYDT-QQLSKATRE 142 (424)
Q Consensus 75 ~~~i~sGi-~PTG~-lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~ 142 (424)
++.+++|+ -|+|. +|+||.++-+-. +. +-+| ...|++|++.. -|-|.+-. ...+ +...+++..
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~--Dv---iaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~ 185 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTAT--DI---LARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIAR 185 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHH--HH---HHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHH
Confidence 35677776 34697 999998764322 22 1122 13588876554 46666631 1122 345667778
Q ss_pred HHHHHHHcCccCC
Q 014464 143 TAAIYLACGIDNS 155 (424)
Q Consensus 143 ~~~~~lA~GlDp~ 155 (424)
+...+..+|+.-+
T Consensus 186 ~~~q~~~lG~s~D 198 (963)
T PLN02563 186 FRSQLKSLGFSYD 198 (963)
T ss_pred HHHHHHHhCcEee
Confidence 8888889996443
No 118
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=53.88 E-value=10 Score=38.32 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=38.8
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE--EeccceecC------CCCHHH-HHHHHHHH
Q 014464 75 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAITL------PYDTQQ-LSKATRET 143 (424)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t~------~~~~~~-i~~~~~~~ 143 (424)
.+++| +|.-+=..+||||+-..+ +.++ +.++++. |++|.+. |+|.---+. ..++.+ .+.++..+
T Consensus 8 ~v~~Y~CGPTVYd~~HiGhaR~~v--~~D~---l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f 82 (300)
T PF01406_consen 8 KVRMYVCGPTVYDYAHIGHARTYV--FFDV---LRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEF 82 (300)
T ss_dssp EEEEEEEEEBTTS--BHHHHHHHH--HHHH---HHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred eEEEEcCCCCCCCCCCCcceeeee--eHHH---HHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHH
Confidence 34555 477777899999985433 1222 3455555 6777544 667643321 124433 44556677
Q ss_pred HHHHHHcCccCC
Q 014464 144 AAIYLACGIDNS 155 (424)
Q Consensus 144 ~~~~lA~GlDp~ 155 (424)
..++.++|+.|-
T Consensus 83 ~~dm~~Lnv~~p 94 (300)
T PF01406_consen 83 FEDMKALNVLPP 94 (300)
T ss_dssp HHHHHHTT----
T ss_pred HHHHHHcCCCCC
Confidence 778888888653
No 119
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=53.68 E-value=19 Score=38.26 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=58.2
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
+|+=-.=-|||.+|||-.-.|+-|.+.. .+ +.+.++=|-|- -.+ ..+......+..++.=+||++
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfA--------rk~gGkFiLRiEDT-Dq~-----R~v~gs~e~i~~~L~w~nl~~ 99 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFA--------RKKGGKFILRIEDT-DQK-----RLIRGSEEAIYEDLKWANLDW 99 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHH--------HhcCCeEEEEeccc-ccc-----ccccchHHHHHHHHHhcCCCc
Confidence 4554455678999999999999998876 33 44544445442 111 222333345566777899999
Q ss_pred CceE-------EEEcCCcchh----hHHHH----HHhccccHHHHhhh
Q 014464 155 SKAS-------VFVQSHVRAH----VELMW----LLSSATPIGWLNKM 187 (424)
Q Consensus 155 ~k~~-------if~QS~v~~~----~el~w----iL~~~~~v~~l~R~ 187 (424)
|..- =|.||+-.+. ++-.. .+.|+++-.||..+
T Consensus 100 DEgP~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l 147 (524)
T KOG1149|consen 100 DEGPGVGGPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL 147 (524)
T ss_pred ccCCCcCCCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence 8754 3788874332 11111 13477776666543
No 120
>PLN02563 aminoacyl-tRNA ligase
Probab=50.90 E-value=12 Score=43.84 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.0
Q ss_pred cccceEecccch-HHHHHHHHHHHHHHh
Q 014464 220 YQSDFVPVGEDQ-KQHLELTRELAERVN 246 (424)
Q Consensus 220 ~~ad~vpvG~DQ-~~hieLaRdia~r~n 246 (424)
+-+|+..+|.|| .-|+-.+|=....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 459999999999 578877777765543
No 121
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=50.31 E-value=11 Score=43.24 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.8
Q ss_pred cccceEecccch-HHHHHHHHHHHH
Q 014464 220 YQSDFVPVGEDQ-KQHLELTRELAE 243 (424)
Q Consensus 220 ~~ad~vpvG~DQ-~~hieLaRdia~ 243 (424)
+-+|+...|.|| .-|+-.+|-...
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~ 543 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHK 543 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHH
Confidence 459999999999 677777777553
No 122
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=49.97 E-value=13 Score=40.17 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.1
Q ss_pred eEecccchHHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 224 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 224 ~vpvG~DQ~~hieLaR-dia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
+.+.|.|....+-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998653321 11111 12 3456655543 2343 2 45 7999997 678866
Q ss_pred CC
Q 014464 303 LD 304 (424)
Q Consensus 303 ~D 304 (424)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 43
No 123
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=48.29 E-value=13 Score=40.28 Aligned_cols=71 Identities=24% Similarity=0.119 Sum_probs=40.4
Q ss_pred hhhhHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014464 207 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 285 (424)
Q Consensus 207 l~YPvLQAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg 285 (424)
-+=..-|+...|--.-|+.-+|.|-. ||+|- ++|+..-. +|+ +.+...+.. ....+ +|
T Consensus 219 HIECsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~--------------~~~~~w~h~---g~l~~-~g 277 (490)
T PRK14536 219 HIECSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGK--------------PWVRYWLHH---EFLLM-NK 277 (490)
T ss_pred HHHHHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCC--------------CcceEEEEc---CEEee-cC
Confidence 33344556666655678999999964 67755 45554221 231 123333332 22223 55
Q ss_pred CCccccCCCCCCceeec
Q 014464 286 LSKMSKSAPSDQSRINL 302 (424)
Q Consensus 286 ~~KMSKS~p~~~s~I~L 302 (424)
+|||||. +|.|.+
T Consensus 278 -~KMSKSl---GN~itl 290 (490)
T PRK14536 278 -GKMSKSA---GQFLTL 290 (490)
T ss_pred -ccccccC---CCcccH
Confidence 6999997 578877
No 124
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=47.94 E-value=10 Score=42.33 Aligned_cols=71 Identities=27% Similarity=0.274 Sum_probs=42.8
Q ss_pred hHHHHhhhhccccceEecccch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014464 210 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 288 (424)
Q Consensus 210 PvLQAADIl~~~ad~vpvG~DQ-~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 288 (424)
...|+.|||-...|+--+|.|- -||+|= |||+.-- .+|+. .+ +..++.. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~-----------~~--v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKH-----------QW--VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCC-----------CC--CcEEEEE--EEE-Ee-cc-ch
Confidence 3589999999999999999998 467543 3444321 13421 11 1222221 122 33 55 69
Q ss_pred cccCCCCCCceeecCC
Q 014464 289 MSKSAPSDQSRINLLD 304 (424)
Q Consensus 289 MSKS~p~~~s~I~L~D 304 (424)
||||. +|.|.+.|
T Consensus 316 MSKSL---GNfItp~d 328 (651)
T PTZ00399 316 MSKSL---KNFITIRQ 328 (651)
T ss_pred hhhcC---CCcccHHH
Confidence 99997 57777643
No 125
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=47.09 E-value=21 Score=39.16 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=39.9
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCcee
Q 014464 222 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 300 (424)
Q Consensus 222 ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~-~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I 300 (424)
--+-.+|.||..|+.-...+++.++.. .+. ..+-.. .+|- + +| +||||-. |+.|
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~------------------~~~~l~h~~~-g~V~-~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYT------------------WVDGMEHVPF-GLIL-K-DG-KKMSTRK---GRVV 380 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCC------------------cccCeEEEee-eeEe-c-CC-CCCcCCC---CCee
Confidence 346689999999999999999987631 111 111111 2342 3 45 5999997 6788
Q ss_pred ecCCCHH
Q 014464 301 NLLDPKD 307 (424)
Q Consensus 301 ~L~D~~e 307 (424)
.|.|==+
T Consensus 381 ~l~dLld 387 (562)
T PRK12451 381 LLEEVLE 387 (562)
T ss_pred EHHHHHH
Confidence 8876333
No 126
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=46.19 E-value=52 Score=26.78 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.8
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHH
Q 014464 330 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 374 (424)
Q Consensus 330 ~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~ 374 (424)
.|--+.+++.++. .+.+.+|+.++|-.+...|+..++.-+...
T Consensus 29 tRI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 29 TRIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ceecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4445556666655 789999999999999999999888876655
No 127
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=44.10 E-value=11 Score=38.76 Aligned_cols=73 Identities=27% Similarity=0.223 Sum_probs=42.3
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014464 222 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 222 ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
.-+-.+|.||..|+.-...+++.++..-. ... ..+-.. .++. +.||+.|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~~-~~H~~~-g~vl-~~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------AVK-LQHVSF-GVVL-LKDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HCT-EEEEEE--EEE-ETTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CCE-EEEEEE-EEEE-cCCCCccccCCC---CCceE
Confidence 34668999999999999999999873100 011 111111 1222 235523799996 68998
Q ss_pred cCCCHHHHHHHhhh
Q 014464 302 LLDPKDVIANKIKR 315 (424)
Q Consensus 302 L~D~~e~I~kKI~k 315 (424)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 85544444444444
No 128
>PLN02946 cysteine-tRNA ligase
Probab=43.22 E-value=1.6e+02 Score=32.53 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=41.8
Q ss_pred ceEE-EecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE-Eeccce--ecC-----CCCH-HHHHHHHHHHH
Q 014464 76 KRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF-IVDLHA--ITL-----PYDT-QQLSKATRETA 144 (424)
Q Consensus 76 ~~i~-sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~-IaDlhA--~t~-----~~~~-~~i~~~~~~~~ 144 (424)
+.+| +|.-+-|.+||||....+. .++ +.+|+.. |++|++. -.|.|. ++. ..++ +..+.++..+.
T Consensus 81 v~~Y~CGpTvYd~~HIGhaR~~V~--~Dv---l~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~ 155 (557)
T PLN02946 81 VGMYVCGVTAYDLSHIGHARVYVT--FDV---LYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFL 155 (557)
T ss_pred eeEEEeCCccCCCCccccchhhHH--HHH---HHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4444 3655559999999865432 122 2344433 7887554 223331 111 1255 44456667788
Q ss_pred HHHHHcCccC
Q 014464 145 AIYLACGIDN 154 (424)
Q Consensus 145 ~~~lA~GlDp 154 (424)
.++.++|+.+
T Consensus 156 ~d~~~LnI~~ 165 (557)
T PLN02946 156 SDMAYLHCLP 165 (557)
T ss_pred HHHHHCCCCC
Confidence 8889999853
No 129
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=43.04 E-value=1.2e+02 Score=24.79 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014464 361 WGTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 417 (424)
Q Consensus 361 ~~dlK~~Lae~I~~~L~pirer~~~~~~~-~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~ 417 (424)
-.++...+++...+..+.+|++..+...+ .+.+.+......+++++.+..|=.-|++
T Consensus 14 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 14 LEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777765533 2344555555556666666666666654
No 130
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=42.28 E-value=15 Score=41.11 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=19.8
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014464 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303 (424)
Q Consensus 265 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 303 (424)
++.|..++.. ..+.. +| +|||||. +|.|+..
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~ 341 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWAR 341 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHH
Confidence 5667666543 24433 56 6999997 5777654
No 131
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=42.24 E-value=19 Score=41.22 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=18.9
Q ss_pred cccceEecccch-HHHHHHHHHHHH
Q 014464 220 YQSDFVPVGEDQ-KQHLELTRELAE 243 (424)
Q Consensus 220 ~~ad~vpvG~DQ-~~hieLaRdia~ 243 (424)
|-+|+.+.|.|| .-|+-.+|-...
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~ 546 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTK 546 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHH
Confidence 459999999999 678877775543
No 132
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=41.98 E-value=65 Score=32.73 Aligned_cols=68 Identities=26% Similarity=0.152 Sum_probs=37.9
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014464 210 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 288 (424)
Q Consensus 210 PvLQAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 288 (424)
...|+...|-..-|+--+|.|-. ||+|=-+-.++-.+ |+. |. ..-+++. .|.- +| +|
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~------------~a-~~W~H~g---~l~~--~g-~K 252 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKP------------FA-NYWMHNG---HLNV--DG-EK 252 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-------------SE-EEEEEE-----EEE--TT-CE
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---Cch------------HH-HHHHHHH---HHhh--cC-cc
Confidence 35788888888899999999975 78876555555432 321 11 1112221 3322 45 79
Q ss_pred cccCCCCCCceeec
Q 014464 289 MSKSAPSDQSRINL 302 (424)
Q Consensus 289 MSKS~p~~~s~I~L 302 (424)
||||. +|.|.+
T Consensus 253 MSKSl---gN~~~i 263 (300)
T PF01406_consen 253 MSKSL---GNFITI 263 (300)
T ss_dssp --TTT---T---BH
T ss_pred ccccC---CCEEEH
Confidence 99997 577776
No 133
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.99 E-value=90 Score=33.75 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=43.8
Q ss_pred CceEEE-ecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE--Eecc-----------ceecC-----CCCH-
Q 014464 75 KKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDL-----------HAITL-----PYDT- 133 (424)
Q Consensus 75 ~~~i~s-Gi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~--IaDl-----------hA~t~-----~~~~- 133 (424)
.+++|+ |.-+=..+||||....+-- ++ ..+|++. |++|++. |+|+ -.++. ..++
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~--Dv---l~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~ 95 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFE--DL---LIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVY 95 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHH--HH---HHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHH
Confidence 455554 5555577999998754421 22 2344444 7888764 6666 11111 1133
Q ss_pred HHHHHHHHHHHHHHHHcCccCC
Q 014464 134 QQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 134 ~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
+....++..+..++.++|+.+.
T Consensus 96 e~a~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 96 EISRFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHHHHcCCCCC
Confidence 3444555677788889998764
No 134
>PLN02946 cysteine-tRNA ligase
Probab=39.93 E-value=14 Score=40.44 Aligned_cols=71 Identities=23% Similarity=0.057 Sum_probs=42.3
Q ss_pred hhhhHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014464 207 LTYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 285 (424)
Q Consensus 207 l~YPvLQAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg 285 (424)
-+=..-|+...|-..-|+--+|.|-. ||+|- ++|+..- .+|. .|.. .-++. .+|. + +|
T Consensus 263 HIECSaMs~~~lG~~~DIH~GG~DL~FPHHEN--EiAQsea-~~g~------------~~a~-yW~H~---G~v~-~-~G 321 (557)
T PLN02946 263 HIECSAMSAAYLGHSFDIHGGGMDLVFPHHEN--EIAQSCA-ACCD------------SNIS-YWIHN---GFVT-V-DS 321 (557)
T ss_pred HHHHHHHHHHHcCCCeeEeccccccCCCcccc--hHHHHHH-HhCC------------CCCc-eeeEe---eEEE-e-CC
Confidence 33446788888888899999999964 67765 3444321 1231 1111 11232 2444 4 56
Q ss_pred CCccccCCCCCCceeec
Q 014464 286 LSKMSKSAPSDQSRINL 302 (424)
Q Consensus 286 ~~KMSKS~p~~~s~I~L 302 (424)
+|||||. +|.|.+
T Consensus 322 -~KMSKSl---GN~itl 334 (557)
T PLN02946 322 -EKMSKSL---GNFFTI 334 (557)
T ss_pred -CCcCCcC---CCcCCH
Confidence 7999997 566666
No 135
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=38.22 E-value=35 Score=39.00 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=41.4
Q ss_pred CceEEE-ecCCCCcchhhhhHHHHHHHHHhccccccc-cccCceEEEE-EeccceecC--------CCCHH---------
Q 014464 75 KKRIVS-GVQPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAITL--------PYDTQ--------- 134 (424)
Q Consensus 75 ~~~i~s-Gi~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~t~--------~~~~~--------- 134 (424)
+..+.+ .--|+|.+||||.++.+.. ++ +-+| ...|++|.+. -.|-|.+-. ..++.
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~--D~---~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~ 113 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHT--DF---IARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIE 113 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHH--HH---HHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHH
Confidence 345555 3457799999998864432 22 1122 2458887554 446665421 11111
Q ss_pred ----HHHHHHHHHHHHHHHcCccCC
Q 014464 135 ----QLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 135 ----~i~~~~~~~~~~~lA~GlDp~ 155 (424)
-..+++..+..++.+.|+..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 114 LCRELTDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhCeeec
Confidence 223344556677788887544
No 136
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=37.45 E-value=28 Score=41.70 Aligned_cols=34 Identities=24% Similarity=0.464 Sum_probs=21.9
Q ss_pred ccccchhhhHHHHhhhh--ccccceEecccchHHHH
Q 014464 202 VGVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 235 (424)
Q Consensus 202 ~~~g~l~YPvLQAADIl--~~~ad~vpvG~DQ~~hi 235 (424)
.+++.+-||--...+-+ .|=+|+.+=|.||..-.
T Consensus 652 ~p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 652 MPYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred ChHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 35666777742112222 35699999999998754
No 137
>PLN02224 methionine-tRNA ligase
Probab=36.91 E-value=26 Score=39.00 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=35.6
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
...++..+|.|-..++-+.= -|--+. -| ++.|..++.. ..+ .+ +| +|||||. +|.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35688999999988643322 111111 12 4567666543 233 33 66 7999997 578
Q ss_pred eecCC
Q 014464 300 INLLD 304 (424)
Q Consensus 300 I~L~D 304 (424)
|++.|
T Consensus 375 i~p~e 379 (616)
T PLN02224 375 LEPFE 379 (616)
T ss_pred CCHHH
Confidence 86643
No 138
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=36.36 E-value=46 Score=34.21 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=22.5
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccccCceE--EEEEeccc
Q 014464 79 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYET--LFFIVDLH 125 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~--~i~IaDlh 125 (424)
|+.--|||.+|+||.-.++---. + +|.+--.|++| ...|.||=
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~-l---aril~~~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDS-L---ARILEAAGYDVTRENYIGDWG 70 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHH-H---HHHHHHTTEEEEEEEEEBTTS
T ss_pred ecCCCCCCCCcCCcchhhhhhHH-H---HHHHHHcCCeeeeEEEECCCC
Confidence 88899999999999855432110 1 01111247775 55678873
No 139
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.35 E-value=1.1e+02 Score=33.80 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=18.1
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014464 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303 (424)
Q Consensus 265 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 303 (424)
++.|..++... .+ -+ +| +|||||. ++.|+..
T Consensus 315 ~~lP~~i~ahg--~l-~~-~G-~KmSKSr---G~~V~~~ 345 (558)
T COG0143 315 LPLPTRIFAHG--FL-TL-EG-QKMSKSR---GNVVDPD 345 (558)
T ss_pred CCCCCEEEeee--eE-EE-CC-ccccccC---CcEEeHH
Confidence 34566555431 11 12 55 5999997 5788753
No 140
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.71 E-value=19 Score=36.87 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=20.3
Q ss_pred CCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccc
Q 014464 85 TGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLH 125 (424)
Q Consensus 85 TG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlh 125 (424)
.|..||||| |+.+ -....|+|-|+|+-
T Consensus 62 cGD~HLgN~-ga~~-------------~~~G~V~f~i~DFD 88 (410)
T COG4320 62 CGDAHLGNF-GAAR-------------NSKGNVVFKIADFD 88 (410)
T ss_pred ecccccccc-hhhc-------------cCCCceEEEecccc
Confidence 478999998 6653 23467889999974
No 141
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=34.89 E-value=55 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=25.0
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHH
Q 014464 330 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 369 (424)
Q Consensus 330 ~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~La 369 (424)
.|..+..++..+ -.+.+.+||.++|-.+...+++.+|+
T Consensus 17 TRI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 17 TRIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp SS-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 344455555544 47889999999999999999998876
No 142
>PHA01929 putative scaffolding protein
Probab=32.61 E-value=3.1e+02 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=26.6
Q ss_pred CCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhH
Q 014464 328 NLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTF 364 (424)
Q Consensus 328 ~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dl 364 (424)
-+++|....-+.|+..|++.+--++++.|. .+.++|-
T Consensus 115 ~~gDp~laasv~~L~~~sg~~dlD~~RAfGKA~E~~Dp 152 (306)
T PHA01929 115 LEGDPQLAPSVSYLEAFSGLDKLDTVRAFGKAAENRDP 152 (306)
T ss_pred ccCCcccchHHHHHHHHhcCcchHHHHHHHHHhhccCc
Confidence 347788888899999998776677777776 2444443
No 143
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=31.41 E-value=48 Score=38.93 Aligned_cols=48 Identities=25% Similarity=0.132 Sum_probs=27.7
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-cccCceEEE-EEeccceec
Q 014464 76 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLF-FIVDLHAIT 128 (424)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i-~IaDlhA~t 128 (424)
+.|.+|. -|||.+|+||.++.... ++ +-+| ...|++|.+ .-.|-|.+-
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~--D~---~~Ry~rm~G~~v~~~~G~D~~Gl~ 112 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQ--DS---LIRYHRMKGDETLWVPGTDHAGIA 112 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHH--HH---HHHHHHhcCCcccCCCCCCCCchh
Confidence 4555554 36799999998864322 22 1122 134788754 455777663
No 144
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.28 E-value=44 Score=36.93 Aligned_cols=40 Identities=25% Similarity=0.450 Sum_probs=27.9
Q ss_pred EEecCCCCcchhhhhHHHHH-----HHHHhccccccccccCceE--EEEEecccee
Q 014464 79 VSGVQPTGSIHLGNYLGAIK-----NWIALQPFCDLMLQNSYET--LFFIVDLHAI 127 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~-----~~~~l~~~~~~~~Q~~~~~--~i~IaDlhA~ 127 (424)
||.=-|||.||+||.-+++- ++..+ .||+| -..|.||=..
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~---------~Gy~V~r~~yvnD~G~Q 169 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEF---------LGYDVTRENYVNDWGTQ 169 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHH---------cCCCeeEEeeECcHHHH
Confidence 88999999999999865542 33332 36765 5668888544
No 145
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.25 E-value=31 Score=39.77 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCCcchhhhhHHH--HHHHHHhccccccccccCceEEEEEeccce
Q 014464 84 PTGSIHLGNYLGA--IKNWIALQPFCDLMLQNSYETLFFIVDLHA 126 (424)
Q Consensus 84 PTG~lHLGnylga--i~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA 126 (424)
+||.+|+||.+.- +.-++.+ ++ -.|++++++-+=.||
T Consensus 44 VTG~LHmGHAl~~tl~D~l~Ry----kR--M~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARY----KR--MRGYNVLWPPGTDHA 82 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHH----HH--cCCCeeecCCCCCCC
Confidence 3999999997531 1112222 00 237888777665555
No 146
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.16 E-value=19 Score=38.65 Aligned_cols=71 Identities=28% Similarity=0.178 Sum_probs=44.5
Q ss_pred hHHHHhhhhccccceEecccc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014464 210 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 288 (424)
Q Consensus 210 PvLQAADIl~~~ad~vpvG~D-Q~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 288 (424)
...|+.++|--.-||--+|.| +-||+|= |+|+.-- .+|.+ .|. -.-+++ .+|+= +| +|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~a-~yWmH~---G~l~i--~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PFA-KYWMHN---GFLNI--DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cce-eEeEEc---ceeee--cC-cC
Confidence 467899999989999999999 5688875 5555422 13421 111 112222 23322 56 79
Q ss_pred cccCCCCCCceeecCC
Q 014464 289 MSKSAPSDQSRINLLD 304 (424)
Q Consensus 289 MSKS~p~~~s~I~L~D 304 (424)
||||. +|.|.+.|
T Consensus 269 MSKSL---GNfiti~d 281 (464)
T COG0215 269 MSKSL---GNFITVRD 281 (464)
T ss_pred ccccc---CCeeEHHH
Confidence 99998 57887754
No 147
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=29.88 E-value=2.1e+02 Score=28.78 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=46.8
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
.++|....|.-..|-+.+.|.+++.+| + |.-++.- +.+-. .||- =||+-+
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~--~------------------~v~I~~~--ptvRe-~dGL-A~SSRN------ 191 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF--L------------------DIEIVPV--PIVRE-EDGL-ALSSRN------ 191 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC--C------------------CceEEEe--CceEC-CCCC-chhhcc------
Confidence 379999999999999999999999877 2 2222221 11211 2553 677553
Q ss_pred eecCCCHHHHHHHhhhccC
Q 014464 300 INLLDPKDVIANKIKRCKT 318 (424)
Q Consensus 300 I~L~D~~e~I~kKI~kA~T 318 (424)
.||+....+..-.|-++.+
T Consensus 192 ~~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 192 VYLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 6777777777777777665
No 148
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=29.35 E-value=1.9e+02 Score=25.18 Aligned_cols=70 Identities=11% Similarity=0.078 Sum_probs=45.7
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014464 81 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 159 (424)
Q Consensus 81 Gi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 159 (424)
-+.=||++..-+.+-+ | .+|.+-++++++-..==. .......+++.......+...|++|+++.+
T Consensus 33 rvpC~Grv~~~~il~A------f--------~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~ 98 (124)
T PF02662_consen 33 RVPCSGRVDPEFILRA------F--------EKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRL 98 (124)
T ss_pred EccCCCccCHHHHHHH------H--------HcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEE
Confidence 4445688888776532 3 678887777665421100 112355666777777778889999999998
Q ss_pred EEcCC
Q 014464 160 FVQSH 164 (424)
Q Consensus 160 f~QS~ 164 (424)
++=|-
T Consensus 99 ~~~~~ 103 (124)
T PF02662_consen 99 YWISA 103 (124)
T ss_pred EEeCc
Confidence 87654
No 149
>PLN02610 probable methionyl-tRNA synthetase
Probab=28.82 E-value=23 Score=40.63 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=31.7
Q ss_pred eEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014464 224 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303 (424)
Q Consensus 224 ~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 303 (424)
+..+|.|-..++-+.==..-. . .| ..++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~-a--~g------------~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLL-G--TG------------ENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHHHHHHHH-h--CC------------CCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 678888887776442111100 0 11 124567666543 122 22 66 6999997 5777764
No 150
>PRK10404 hypothetical protein; Provisional
Probab=28.58 E-value=2.8e+02 Score=23.50 Aligned_cols=57 Identities=11% Similarity=0.009 Sum_probs=35.2
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014464 361 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSA-YLDKVLADGAAKAADIADATLNNVYQ 417 (424)
Q Consensus 361 ~~dlK~~Lae~I~~~L~pirer~~~~~~~~~-~l~~IL~~Ga~kAr~iA~~Tl~~Vr~ 417 (424)
-.++.+..++.-.+..+.+|++.+..+.+-. .+.+.-....+++++.|+.|=+-|++
T Consensus 21 le~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 21 LEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555556666667776666554432 44455555566788888888777765
No 151
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=28.20 E-value=54 Score=35.93 Aligned_cols=44 Identities=25% Similarity=0.458 Sum_probs=27.2
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceE--EEEEeccc
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET--LFFIVDLH 125 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~--~i~IaDlh 125 (424)
.-|++--|+|.+|+||.-+++--= .+ -+++. .|++| ...|.||=
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd-~l----~r~~~~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGD-SL----ARILEFLGYDVIREYYVNDWG 162 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHH-HH----HHHHHHCCCCeeEEeeecchH
Confidence 447899999999999987655310 01 01122 36654 56788863
No 152
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=27.79 E-value=2.6e+02 Score=25.34 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=10.8
Q ss_pred cCccCCceEEEEcCCc
Q 014464 150 CGIDNSKASVFVQSHV 165 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v 165 (424)
.|+|-+++.++-..|.
T Consensus 62 ~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 62 EGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCCCcCeEEEEecCCC
Confidence 3677778887666554
No 153
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=27.59 E-value=35 Score=36.82 Aligned_cols=65 Identities=23% Similarity=0.163 Sum_probs=36.2
Q ss_pred HHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014464 213 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 291 (424)
Q Consensus 213 QAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 291 (424)
|+...|--.-|+.-+|.|-. ||+|- ++|...-. .|. +.+...+.. .++ .+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHen--e~Aqs~a~-~g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHIN--EIAIAECY-LNK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchh--HHHHHhhh-cCC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444568999999965 57665 44443221 231 223333332 122 23 55 69999
Q ss_pred CCCCCCceeec
Q 014464 292 SAPSDQSRINL 302 (424)
Q Consensus 292 S~p~~~s~I~L 302 (424)
|. +|.|.+
T Consensus 283 Sl---GN~i~l 290 (481)
T PRK14534 283 SN---NNFITI 290 (481)
T ss_pred cC---CCcccH
Confidence 97 577877
No 154
>PLN02843 isoleucyl-tRNA synthetase
Probab=26.86 E-value=81 Score=37.09 Aligned_cols=76 Identities=17% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-cccCceEEE-EEeccceecC--------------CCCHHHHHH
Q 014464 76 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLF-FIVDLHAITL--------------PYDTQQLSK 138 (424)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i-~IaDlhA~t~--------------~~~~~~i~~ 138 (424)
+.+..|. -++|.+|+||.++.+.+ ++ +.+| ...|++|.+ .--|-|.+-. ..+++++++
T Consensus 34 f~i~~~PPy~nG~lHiGHa~~~~lk--Di---i~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~ 108 (974)
T PLN02843 34 FTLHDGPPYANGDLHIGHALNKILK--DF---INRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRA 108 (974)
T ss_pred EEEeCCCCCCCCCcchhHHHHHHHH--HH---HHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHH
Confidence 4444443 35799999998865432 22 1122 234777744 4556664421 114556655
Q ss_pred HHHHHH--------HHHHHcCc--cCCc
Q 014464 139 ATRETA--------AIYLACGI--DNSK 156 (424)
Q Consensus 139 ~~~~~~--------~~~lA~Gl--Dp~k 156 (424)
.+++.+ ..+..+|+ |-++
T Consensus 109 ~c~~~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 109 KAAKFAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCceecCC
Confidence 555433 45567888 5554
No 155
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.23 E-value=95 Score=34.52 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=50.9
Q ss_pred eEEEec--CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCcc
Q 014464 77 RIVSGV--QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGID 153 (424)
Q Consensus 77 ~i~sGi--~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~GlD 153 (424)
.|+|-| +|-|.+||||.=.+.-||-.. .....+.++-=|. |+|. ..++-=+.+.++++. +|++
T Consensus 248 kV~TRFPPEPNG~LHIGHaKAInvNFgyA--------k~~~G~cyLRfDD---TNPEkEee~yf~sI~e~V~W---LG~~ 313 (764)
T KOG1148|consen 248 KVVTRFPPEPNGILHIGHAKAINVNFGYA--------KAHGGVCYLRFDD---TNPEKEEEEYFESIKEMVAW---LGFE 313 (764)
T ss_pred eeEEeCCCCCCceeeecchhheeechhhh--------hhhCCeEEEecCC---CCcchhhHHHHHHHHHHHHH---hCCC
Confidence 677777 455999999974221122111 1111233344343 3332 223333333444332 5999
Q ss_pred CCceEEEEcCCcc-hhhHHHHH-------HhccccHHHHhhhhhHH
Q 014464 154 NSKASVFVQSHVR-AHVELMWL-------LSSATPIGWLNKMIQFK 191 (424)
Q Consensus 154 p~k~~if~QS~v~-~~~el~wi-------L~~~~~v~~l~R~~~~k 191 (424)
|=|++ ..||+. +..+++-. +.|+.+..++.+...++
T Consensus 314 P~kvT--ysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 314 PYKVT--YSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred ceeee--cchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 98755 458864 34444443 34888888887444433
No 156
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=26.13 E-value=19 Score=37.58 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=16.9
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 265 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
++.|..++.. ..+. + +| +|||||. ++.|+.
T Consensus 309 ~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~ 338 (391)
T PF09334_consen 309 LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWP 338 (391)
T ss_dssp B---SEEEEE----EE-E-TT-CCEETTT---TESSBH
T ss_pred CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCH
Confidence 5677766543 2333 3 66 6999997 578865
No 157
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.13 E-value=4.4e+02 Score=30.41 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=19.4
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 014464 391 AYLDKVLADG--AAKAADIADATLNNVYQA 418 (424)
Q Consensus 391 ~~l~~IL~~G--a~kAr~iA~~Tl~~Vr~~ 418 (424)
+++++.|-.| ..-+|..++.||-.+...
T Consensus 746 divKDRLY~~~~~s~~rrs~QttL~h~l~~ 775 (937)
T KOG0433|consen 746 DIVKDRLYCDKVGSESRRSAQTTLHHLLHN 775 (937)
T ss_pred HHHhhhhhcCCCCcHHHHHHHHHHHHHHHH
Confidence 4566777766 566788888888766554
No 158
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=25.63 E-value=2.4e+02 Score=25.17 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014464 362 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 414 (424)
Q Consensus 362 ~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~ 414 (424)
..+|..+=++|.+.+.|.=. -..+.++..+++.+-....+++|+++|++
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46899999999999888633 23566778888888889999999988875
No 159
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=23.43 E-value=4.9e+02 Score=28.48 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=25.0
Q ss_pred cccceEecccchHHHHHHHHHHHHHHh
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVN 246 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n 246 (424)
.++|....|.--.|-+.+.|.+++.+|
T Consensus 140 v~P~~a~fGeKD~QQl~vir~mv~dL~ 166 (512)
T PRK13477 140 VQPKRAYFGEKDWQQLAIIRRLVADLN 166 (512)
T ss_pred cCCCeeeecccHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999887
No 160
>PLN02286 arginine-tRNA ligase
Probab=22.98 E-value=72 Score=35.15 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=25.9
Q ss_pred EEecCCCCcchhhhhHHHHH-----HHHHhccccccccccCceE--EEEEeccc
Q 014464 79 VSGVQPTGSIHLGNYLGAIK-----NWIALQPFCDLMLQNSYET--LFFIVDLH 125 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~-----~~~~l~~~~~~~~Q~~~~~--~i~IaDlh 125 (424)
|+.--|||.+|+||.-+++- ++.+ -.|++| ...|.||=
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~---------~~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLE---------FSGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHH---------HcCCceEEEEeecchH
Confidence 88999999999999754432 3322 246665 55677773
No 161
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=29 Score=40.02 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=11.0
Q ss_pred CCCCccccCCCCCCceeec
Q 014464 284 DGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 284 dg~~KMSKS~p~~~s~I~L 302 (424)
+| .|||||. ||.|..
T Consensus 522 ~G-~KMSKS~---GNvIDP 536 (877)
T COG0525 522 QG-RKMSKSK---GNVIDP 536 (877)
T ss_pred CC-CCCcccC---CCcCCH
Confidence 45 7999998 566643
No 162
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=22.64 E-value=3.5e+02 Score=30.80 Aligned_cols=35 Identities=23% Similarity=0.135 Sum_probs=25.3
Q ss_pred hhhHHHHhhhhccccceEecccch-HHHHHHHHHHHHH
Q 014464 208 TYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 244 (424)
Q Consensus 208 ~YPvLQAADIl~~~ad~vpvG~DQ-~~hieLaRdia~r 244 (424)
+=...|+...|--.-|+.-+|.|- -||+|= |+|+.
T Consensus 433 IECSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 433 IECSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 334677777777778999999995 478765 55554
No 163
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=21.64 E-value=77 Score=34.78 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=26.4
Q ss_pred EEecCCCCcchhhhhHHHHHH--HHHhccccccccccCceE--EEEEeccce
Q 014464 79 VSGVQPTGSIHLGNYLGAIKN--WIALQPFCDLMLQNSYET--LFFIVDLHA 126 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~~--~~~l~~~~~~~~Q~~~~~--~i~IaDlhA 126 (424)
|+.=-|||.+|+||.-+++-- +..+ +--.|++| ...|.||=.
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ri------l~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHI------AEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHH------HHHCCCCeEEEeeecCchH
Confidence 889999999999998554321 1111 11246665 566777743
No 164
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=21.19 E-value=2.2e+02 Score=30.25 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=40.5
Q ss_pred hHHHHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014464 210 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 288 (424)
Q Consensus 210 PvLQAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~K 288 (424)
..-|+..+|--.-|+.-+|.|-. +|+|- ++|+..- .+|+. +-+...+.. -.... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC-CC
Confidence 45677777777789999999965 56654 4444322 13320 112333332 22233 56 79
Q ss_pred cccCCCCCCceeec
Q 014464 289 MSKSAPSDQSRINL 302 (424)
Q Consensus 289 MSKS~p~~~s~I~L 302 (424)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99997 577776
No 165
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=20.74 E-value=2.5e+02 Score=24.19 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcC
Q 014464 400 GAAKAADIADATLNNVYQAMG 420 (424)
Q Consensus 400 Ga~kAr~iA~~Tl~~Vr~~~G 420 (424)
-++++|+.|+.-|+++|+.||
T Consensus 38 e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 38 EAEELRSKAESALKEARDRLG 58 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665
No 166
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=20.52 E-value=48 Score=38.20 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=27.0
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-cccCceEEEE-Eecccee
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAI 127 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~ 127 (424)
++.|++|. -+||.+|+||.++.... ++ +-+| ...|++|.+. -.|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~--D~---~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQ--DI---IARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHH--HH---HHHHHHhcCCcccCCCCcCcCCC
Confidence 35565544 35799999998754322 21 0011 1247887544 4566665
No 167
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=5.5e+02 Score=24.78 Aligned_cols=67 Identities=6% Similarity=0.106 Sum_probs=42.6
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHHhhhHH-HHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 014464 349 KGEVAEECQ-NMNWGTFKPLLTDALIEHLHPI-QVRYEEIMSDSAYLDKVLADGAA--KAADIADATLNNVYQ 417 (424)
Q Consensus 349 ~eel~~~y~-~l~~~dlK~~Lae~I~~~L~pi-rer~~~~~~~~~~l~~IL~~Ga~--kAr~iA~~Tl~~Vr~ 417 (424)
+|++.++|. ..+- ..-.++|-.+++.+.++ .++.+..+++|+ ++.+-+--++ +.|-+--+++++|.+
T Consensus 80 Le~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvld 150 (217)
T KOG0859|consen 80 LERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366777765 2222 25668999999888874 566667778887 7777654443 455555555555554
No 168
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.10 E-value=59 Score=35.33 Aligned_cols=38 Identities=32% Similarity=0.158 Sum_probs=27.8
Q ss_pred cchhhhHHHHhhhhccccceEecccchH-HHH--HHHHHHH
Q 014464 205 ALLTYPVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELA 242 (424)
Q Consensus 205 g~l~YPvLQAADIl~~~ad~vpvG~DQ~-~hi--eLaRdia 242 (424)
|-=+=...||+|||-.+-||--+|.|=. ||+ |+|.--|
T Consensus 242 GWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA 282 (586)
T KOG2007|consen 242 GWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEA 282 (586)
T ss_pred CceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHH
Confidence 3334456899999999999999999975 565 4544433
Done!