Query 014464
Match_columns 424
No_of_seqs 174 out of 1340
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:03:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 1.7E-95 6E-100 734.0 34.5 329 74-423 14-344 (346)
2 3prh_A Tryptophanyl-tRNA synth 100.0 2E-95 7E-100 742.4 34.5 326 75-423 35-360 (388)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 1.4E-95 5E-100 734.0 30.7 331 75-423 6-339 (341)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 1E-90 3.5E-95 696.3 34.6 326 76-424 2-327 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 9.7E-91 3.3E-95 701.4 28.7 326 75-422 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 4.1E-89 1.4E-93 683.0 33.0 317 75-421 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 1.3E-86 4.5E-91 668.8 33.0 321 76-423 2-329 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 3.9E-86 1.3E-90 668.5 35.2 331 68-424 15-351 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 3.9E-86 1.3E-90 666.0 31.0 320 74-422 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 7.9E-72 2.7E-76 570.1 21.5 286 74-403 72-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 2.6E-69 8.8E-74 549.4 19.8 281 74-397 69-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 6.7E-67 2.3E-71 531.6 26.5 279 74-396 55-366 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.8E-67 6E-72 536.5 19.7 274 75-387 33-362 (375)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 4.3E-67 1.5E-71 529.0 21.8 268 74-386 39-331 (348)
15 2cya_A Tyrosyl-tRNA synthetase 100.0 1.1E-66 3.7E-71 529.0 22.2 269 74-386 34-348 (364)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 7.7E-68 2.6E-72 547.2 9.0 302 74-416 101-432 (432)
17 3tze_A Tryptophanyl-tRNA synth 100.0 1.5E-65 5.2E-70 525.6 20.9 274 74-389 100-395 (406)
18 3hzr_A Tryptophanyl-tRNA synth 100.0 4.6E-65 1.6E-69 519.3 21.3 279 74-396 81-380 (386)
19 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.5E-64 5.1E-69 547.9 26.0 291 74-398 39-360 (690)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 1.3E-63 4.3E-68 510.1 20.1 281 74-397 73-378 (393)
21 3i05_A Tryptophanyl-tRNA synth 100.0 3.7E-64 1.3E-68 514.2 13.9 287 74-404 77-392 (395)
22 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.1E-62 3.7E-67 492.4 23.9 264 74-385 31-321 (323)
23 3foc_A Tryptophanyl-tRNA synth 100.0 2.2E-63 7.5E-68 514.0 18.5 280 74-396 90-444 (451)
24 2zp1_A Tyrosyl-tRNA synthetase 100.0 3.1E-61 1.1E-65 480.2 23.2 257 74-385 27-308 (314)
25 2dlc_X Tyrosyl-tRNA synthetase 100.0 9.4E-61 3.2E-65 490.1 22.7 279 74-401 38-355 (394)
26 1r6u_A Tryptophanyl-tRNA synth 100.0 1.3E-61 4.5E-66 500.5 16.0 281 74-397 107-414 (437)
27 1r6t_A Tryptophanyl-tRNA synth 100.0 6.4E-61 2.2E-65 500.9 17.3 279 74-396 154-460 (477)
28 1n3l_A Tyrosyl-tRNA synthetase 100.0 4.4E-60 1.5E-64 481.8 23.0 265 74-384 34-329 (372)
29 1h3f_A Tyrosyl-tRNA synthetase 100.0 3.2E-60 1.1E-64 490.3 18.5 286 74-415 36-345 (432)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 4.1E-59 1.4E-63 466.4 18.4 261 75-384 33-319 (322)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 4.9E-56 1.7E-60 449.4 17.4 260 74-384 45-338 (356)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 1.5E-55 5E-60 454.8 19.4 261 74-384 31-316 (432)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 7E-54 2.4E-58 438.3 20.7 274 74-385 63-378 (392)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 5.1E-54 1.8E-58 442.3 16.4 264 74-386 29-316 (419)
35 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3.3E-53 1.1E-57 437.0 21.1 257 75-384 32-315 (420)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.8E-48 9.4E-53 420.8 25.3 262 70-384 377-669 (690)
37 1nzj_A Hypothetical protein YA 99.1 9.1E-11 3.1E-15 115.8 6.4 176 82-294 12-234 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.0 2.9E-10 9.8E-15 119.4 6.6 198 82-315 13-286 (498)
39 1j09_A Glutamyl-tRNA synthetas 98.9 8.1E-10 2.8E-14 115.3 6.1 193 83-315 9-272 (468)
40 3afh_A Glutamyl-tRNA synthetas 98.8 7.3E-10 2.5E-14 116.1 2.3 201 76-316 26-285 (488)
41 3al0_C Glutamyl-tRNA(Gln) amid 98.7 1.1E-09 3.7E-14 117.2 -1.6 200 76-315 130-388 (592)
42 2cfo_A Glutamyl-tRNA synthetas 98.6 3.6E-07 1.2E-11 95.8 13.5 194 81-315 7-276 (492)
43 2o5r_A Glutamyl-tRNA synthetas 98.1 2.5E-05 8.4E-10 81.7 14.3 200 76-315 14-291 (481)
44 4g6z_A Glutamate-tRNA ligase; 97.9 7.1E-05 2.4E-09 78.3 13.5 99 75-187 25-131 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.4 0.00083 2.8E-08 71.2 12.5 177 78-293 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 97.1 0.0018 6.1E-08 68.1 10.6 177 82-294 31-279 (512)
47 2csx_A Methionyl-tRNA syntheta 97.1 0.0028 9.6E-08 65.9 12.0 82 76-164 6-99 (497)
48 2d5b_A Methionyl-tRNA syntheta 97.0 0.0015 5.2E-08 67.8 8.8 82 76-164 4-97 (500)
49 4dlp_A Aminoacyl-tRNA syntheta 96.9 0.0056 1.9E-07 64.4 12.3 82 76-164 26-119 (536)
50 1iq0_A Arginyl-tRNA synthetase 96.1 0.0026 9E-08 67.9 3.6 44 76-124 106-152 (592)
51 3tqo_A Cysteinyl-tRNA syntheta 94.4 0.089 3E-06 54.6 8.2 75 77-156 28-112 (462)
52 1qtq_A GLNRS, protein (glutami 94.3 0.067 2.3E-06 56.6 7.1 96 76-185 27-130 (553)
53 1irx_A Lysyl-tRNA synthetase; 94.3 0.042 1.4E-06 57.7 5.6 82 75-164 21-129 (523)
54 2zue_A Arginyl-tRNA synthetase 93.8 0.049 1.7E-06 58.6 5.1 43 77-124 123-168 (629)
55 2hz7_A Glutaminyl-tRNA synthet 93.7 0.1 3.5E-06 57.8 7.5 92 80-185 71-170 (851)
56 3h99_A Methionyl-tRNA syntheta 90.0 0.8 2.7E-05 48.1 8.7 82 75-163 19-111 (560)
57 3u1f_A Methionyl-tRNA syntheta 88.6 1.1 3.6E-05 46.8 8.4 78 74-156 9-97 (542)
58 3kfl_A Methionyl-tRNA syntheta 86.6 2.1 7.1E-05 45.1 9.3 95 63-164 15-120 (564)
59 3kfl_A Methionyl-tRNA syntheta 83.8 0.25 8.6E-06 52.2 0.6 56 220-303 293-351 (564)
60 2x1l_A Methionyl-tRNA syntheta 82.7 0.41 1.4E-05 49.8 1.6 75 83-164 22-106 (524)
61 1wkb_A Leucyl-tRNA synthetase; 81.5 0.69 2.4E-05 50.9 3.0 60 220-303 602-662 (810)
62 3u1f_A Methionyl-tRNA syntheta 80.8 0.61 2.1E-05 48.6 2.1 54 221-302 278-334 (542)
63 1rqg_A Methionyl-tRNA syntheta 80.5 3.7 0.00013 44.7 8.2 76 75-156 3-91 (722)
64 1li5_A Cysrs, cysteinyl-tRNA s 79.6 1.1 3.9E-05 46.1 3.7 81 78-164 26-116 (461)
65 1wz2_A Leucyl-tRNA synthetase; 78.7 0.94 3.2E-05 51.0 2.9 60 220-303 602-662 (967)
66 3fnr_A Arginyl-tRNA synthetase 77.6 0.42 1.4E-05 49.5 -0.3 61 222-304 235-298 (464)
67 1ile_A Ilers, isoleucyl-tRNA s 75.9 1.3 4.6E-05 48.8 3.1 14 220-233 543-556 (821)
68 3c8z_A Cysteinyl-tRNA syntheta 75.9 1.1 3.6E-05 45.5 2.2 81 77-164 42-133 (414)
69 1gax_A Valrs, valyl-tRNA synth 75.6 0.94 3.2E-05 50.4 1.8 60 220-303 480-540 (862)
70 1ffy_A Isoleucyl-tRNA syntheta 74.2 1.6 5.3E-05 49.0 3.1 57 219-302 546-606 (917)
71 2x1l_A Methionyl-tRNA syntheta 73.9 6.3 0.00021 40.8 7.5 14 220-233 264-277 (524)
72 3h99_A Methionyl-tRNA syntheta 71.9 1.5 5.1E-05 46.1 2.1 31 265-303 327-357 (560)
73 3c8z_A Cysteinyl-tRNA syntheta 70.3 13 0.00045 37.4 8.7 30 213-242 236-266 (414)
74 3sp1_A Cysteinyl-tRNA syntheta 64.9 19 0.00066 37.5 8.7 77 75-156 42-139 (501)
75 4arc_A Leucine--tRNA ligase; l 63.8 11 0.00039 41.9 7.2 76 75-155 54-140 (880)
76 2v0c_A Aminoacyl-tRNA syntheta 58.4 5.5 0.00019 44.4 3.4 25 220-244 530-555 (878)
77 3sp1_A Cysteinyl-tRNA syntheta 56.3 5.3 0.00018 41.7 2.6 28 212-239 244-272 (501)
78 1li5_A Cysrs, cysteinyl-tRNA s 54.9 19 0.00065 36.9 6.6 66 213-303 212-278 (461)
79 1irx_A Lysyl-tRNA synthetase; 50.9 4.2 0.00014 42.4 0.9 70 221-315 230-308 (523)
80 1gax_A Valrs, valyl-tRNA synth 50.0 20 0.0007 39.7 6.2 48 75-127 35-85 (862)
81 4arc_A Leucine--tRNA ligase; l 50.0 12 0.00042 41.6 4.4 26 220-245 542-568 (880)
82 3foc_A Tryptophanyl-tRNA synth 48.0 4 0.00014 42.1 0.1 15 223-237 235-249 (451)
83 2v0c_A Aminoacyl-tRNA syntheta 41.9 21 0.00073 39.6 4.8 76 75-155 34-120 (878)
84 1f7u_A Arginyl-tRNA synthetase 39.9 14 0.00048 39.3 2.9 39 205-246 343-390 (607)
85 3zta_A MTR, anti-sigma-factor 39.1 71 0.0024 26.3 6.3 61 358-418 73-136 (146)
86 1wkb_A Leucyl-tRNA synthetase; 38.9 22 0.00074 38.9 4.2 47 76-127 36-85 (810)
87 1y66_A Engrailed homeodomain; 33.5 44 0.0015 23.2 3.5 32 391-422 6-37 (52)
88 3fnr_A Arginyl-tRNA synthetase 33.1 21 0.00071 36.8 2.7 43 79-125 36-80 (464)
89 1ile_A Ilers, isoleucyl-tRNA s 32.7 17 0.0006 39.8 2.2 48 75-127 39-89 (821)
90 1rqg_A Methionyl-tRNA syntheta 30.9 9.5 0.00032 41.4 -0.3 44 265-316 326-374 (722)
91 1f7u_A Arginyl-tRNA synthetase 28.4 22 0.00076 37.8 2.0 42 78-124 148-192 (607)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=1.7e-95 Score=734.04 Aligned_cols=329 Identities=47% Similarity=0.761 Sum_probs=313.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCcc
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGID 153 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlD 153 (424)
.+++||||++|||.+|||||+|+|++|++| |++++++|+||||||+|++.+++.+++++++++++|+|||+|
T Consensus 14 ~~~~i~sG~~PTG~lHLGh~vg~l~~~~~l--------Q~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlD 85 (346)
T 3n9i_A 14 SKPIVFSGAQPSGELTIGNYMGALRQWVQM--------QDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGID 85 (346)
T ss_dssp -CCEEEEEECSCSCCBHHHHHHTHHHHHTT--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEECcCCCCcccHHHHHHHHHHHHHH--------HhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 467999999999999999999999999999 999999999999999999889999999999999999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHH
Q 014464 154 NSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 233 (424)
Q Consensus 154 p~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~ 233 (424)
|+|++||+||+|++|.+++|+|+|.+++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+|
T Consensus 86 p~k~~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~ 164 (346)
T 3n9i_A 86 PKKSTIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQ 164 (346)
T ss_dssp TTTSEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHH
T ss_pred ccceEEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHH
Confidence 999999999999999999999999999999999999999876653 5789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHh
Q 014464 234 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 313 (424)
Q Consensus 234 hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI 313 (424)
|+|||||+|+|||++|| .+|++|++++++++++||||+||++|||||+|+++|+|+|+|+|++|++||
T Consensus 165 hleltRdia~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI 232 (346)
T 3n9i_A 165 HLELSRDIASRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKI 232 (346)
T ss_dssp HHHHHHHHHHHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHH
Confidence 99999999999999998 568999999987668999999898999999987679999999999999999
Q ss_pred hhccCCCCC--CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChH
Q 014464 314 KRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 391 (424)
Q Consensus 314 ~kA~Td~~~--~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~ 391 (424)
|+|+||+.+ .+.++++++|+++|++.||..++++++++++++|++.++++||+.|+++|+++|+|||+||+++++|++
T Consensus 233 ~kA~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~ 312 (346)
T 3n9i_A 233 KRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEA 312 (346)
T ss_dssp HTCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HhCcCCCCCCccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 999999976 366788999999999999999999999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 392 YLDKVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 392 ~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
+|++||++|++|||++|++||++||++|||.+
T Consensus 313 ~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 313 LLQDVMREGAAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999974
No 2
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=2e-95 Score=742.37 Aligned_cols=326 Identities=48% Similarity=0.762 Sum_probs=305.3
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
+.+|||||+|||.+|||||+|+|++|++| |++++|+|+||||||+|++.+++++++++++++++|+||||||
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~L--------Q~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp 106 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVEL--------QHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDP 106 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHT--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHH--------HccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 34699999999999999999999999999 9999999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|++||+||+|++|+|++|+|+|.+++++|+||++||++.+.. +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 107 ~kt~if~qS~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~h 184 (388)
T 3prh_A 107 EKATLFIQSEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQH 184 (388)
T ss_dssp TTEEEEEGGGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHH
T ss_pred hHeEEEecccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHH
Confidence 9999999999999999999999999999999999999876553 67999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+|||||||+|||+.|| .+|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||
T Consensus 185 leltRdia~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ 252 (388)
T 3prh_A 185 LELTRNLAERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIK 252 (388)
T ss_dssp HHHHHHHHHHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHh
Confidence 9999999999999998 5689999999876689999988889999999988899999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHH
Q 014464 315 RCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 394 (424)
Q Consensus 315 kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~ 394 (424)
+|+||+.+.++++++++|+++|++.||++++++++++++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|+
T Consensus 253 ka~TD~~~~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~ 331 (388)
T 3prh_A 253 SAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELD 331 (388)
T ss_dssp TCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHH
T ss_pred hccCCCCCcccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHH
Confidence 9999999889999999999999999999999999999999999779999999999999999999999999999999 799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 395 KVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 395 ~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
+||++|++|||++|++||++||++|||.+
T Consensus 332 ~il~~Ga~kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 332 RILDEGAERANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999964
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.4e-95 Score=734.05 Aligned_cols=331 Identities=44% Similarity=0.737 Sum_probs=314.2
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
+++|||||+|||.+|||||+|+|++|++| |++++++|+||||||+|++.+++++++++++++++|+||||||
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~l--------Q~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp 77 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQM--------QDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDP 77 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHH--------HHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHH--------HhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCCh
Confidence 46999999999999999999999999999 8999999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|++||+||+|++|.+|+|+|+|.+++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 78 ~k~~i~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~h 156 (341)
T 3sz3_A 78 KKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQH 156 (341)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHH
T ss_pred hhcEEEeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHH
Confidence 99999999999999999999999999999999999999887764 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+|||||||+|||+.||.. .++|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||
T Consensus 157 lel~Rdia~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~ 227 (341)
T 3sz3_A 157 LELARDIATRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKIN 227 (341)
T ss_dssp HHHHHHHHHHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhh
Confidence 999999999999999831 03589999999865589999988888999999977899999999999999999
Q ss_pred hccCCCCC--CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhc-CChhhHHHHHHHHHHHhhhHHHHHHHHHhcChH
Q 014464 315 RCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 391 (424)
Q Consensus 315 kA~Td~~~--~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~-l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~ 391 (424)
+|+||+.+ .+.++++++|+++|++.||.+++++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++++|++
T Consensus 228 ~a~Td~~~~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~ 307 (341)
T 3sz3_A 228 KAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDRE 307 (341)
T ss_dssp TCCCCCCSSCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hccCCCCCCcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 99999987 566888999999999999999999999999999986 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 392 YLDKVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 392 ~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
+|++||++|++|||++|++||++||++|||.+
T Consensus 308 ~l~~il~~G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 308 YLNSVMRDGAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999964
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=1e-90 Score=696.35 Aligned_cols=326 Identities=48% Similarity=0.775 Sum_probs=309.5
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
++|||||+|||.+|||||+|+|++|+++ |++++++|+||||||+|++.+++++++++++++++|+|+|+||+
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~l--------Q~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 73 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVEL--------QHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPT 73 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHH--------TTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHH--------HcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 5899999999999999999999999999 89999999999999999988999999999999999999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHHH
Q 014464 156 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 235 (424)
Q Consensus 156 k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~hi 235 (424)
|++||+||+|++|.+++|+++|.+++++|+||++||++..+ + +++++|+|+||+||||||++|++|+||||.||+||+
T Consensus 74 k~~if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~i 151 (328)
T 1i6k_A 74 QATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHI 151 (328)
T ss_dssp TEEEEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHH
T ss_pred hcEEEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHH
Confidence 99999999999999999999999999999999999987654 2 678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh
Q 014464 236 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 315 (424)
Q Consensus 236 eLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~k 315 (424)
|++||||+|||+.|| ++|++|++++++++++||||+||++|||||+++..|+|+|+|+|++|++|||+
T Consensus 152 el~Rdia~r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~ 219 (328)
T 1i6k_A 152 ELTRDLAERFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219 (328)
T ss_dssp HHHHHHHHHHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh
Confidence 999999999999998 57999999998666899999776789999997423349999999999999999
Q ss_pred ccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHH
Q 014464 316 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 395 (424)
Q Consensus 316 A~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~ 395 (424)
|+||+.+++.|++.++|+++|++.||.+++++++++++++|.+++++++|+.||+.|+++|+|||++|+++++|++ |++
T Consensus 220 a~td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~ 298 (328)
T 1i6k_A 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDR 298 (328)
T ss_dssp CCCCSSCCCCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHH
T ss_pred cCCCCccccccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHH
Confidence 9999998889999889999999999999999999999999998999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccC
Q 014464 396 VLADGAAKAADIADATLNNVYQAMGFLRR 424 (424)
Q Consensus 396 IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~~ 424 (424)
||++|++|||++|++||++||++|||.+|
T Consensus 299 il~~g~~~a~~~a~~~~~~v~~~~g~~~~ 327 (328)
T 1i6k_A 299 VLDEGAEKANRVASEMVRKMEQAMGLGRR 327 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999653
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=9.7e-91 Score=701.38 Aligned_cols=326 Identities=36% Similarity=0.561 Sum_probs=307.5
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
+++|||||+|||.+|||||+|+|++|+++ |++++++|+||||||+|++.+++++++++++++++|+|+||||
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~l--------Q~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp 75 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIEL--------QEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDP 75 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHH--------HHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHH--------HhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCCh
Confidence 57999999999999999999999999999 8899999999999999998999999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-----CCCccccchhhhHHHHhhhhccccceEeccc
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGE 229 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-----~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~ 229 (424)
+|++||+||++++|.+++|+++|.+++++|+|+++||++.++.+ .+++++|+|+||+|||||||+|++|+||||.
T Consensus 76 ~k~~if~qS~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~ 155 (348)
T 2yy5_A 76 QKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGN 155 (348)
T ss_dssp TTEEEEEGGGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCG
T ss_pred hHeEEEECCcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecc
Confidence 99999999999999999999999999999999999998765432 3578999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHH
Q 014464 230 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 309 (424)
Q Consensus 230 DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I 309 (424)
||+||+|++||||+|||+.|| ++|++|++++++..++||||+||++|||||+++++|+|+|+|+|++|
T Consensus 156 DQ~~~lel~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i 223 (348)
T 2yy5_A 156 DQKQHLELTRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVV 223 (348)
T ss_dssp GGHHHHHHHHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHH
Confidence 999999999999999999998 57999999998655899999777789999998645599999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHH---------HHHHHHhcCChhhHHHHHHHHHHHhhhHHH
Q 014464 310 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQ 380 (424)
Q Consensus 310 ~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~e---------el~~~y~~l~~~dlK~~Lae~I~~~L~pir 380 (424)
++|||+|+||+.+++.+++.++|+++|++.||.++++++++ +|+++|.+++|++||+.||++|+++|+|||
T Consensus 224 ~~KI~~a~td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pir 303 (348)
T 2yy5_A 224 VKKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQ 303 (348)
T ss_dssp HHHHHTCCCCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999998899999999999999999999 999999989999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 014464 381 VRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 422 (424)
Q Consensus 381 er~~~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~ 422 (424)
+||+++ +|++ |++||++|++|||++|++||++||++|||.
T Consensus 304 e~~~~~-~d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 304 RKREQI-SREQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHHHSS-CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHh-cCch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999 8888 999999999999999999999999999985
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=4.1e-89 Score=683.02 Aligned_cols=317 Identities=34% Similarity=0.597 Sum_probs=298.4
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
..++||||+|||.+|||||+|+|++|+.+ |++++++|+||||||+|++.+++++++++++++++|+|+|+||
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~l--------Q~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp 74 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDA--------QEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDP 74 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHT--------TTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCT
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHH--------hcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 46899999999999999999999999999 8899999999999999998899999999999999999999999
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccchHHH
Q 014464 155 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 234 (424)
Q Consensus 155 ~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ~~h 234 (424)
+|++||+||+|++|.+++|+++|.+++++|+|+++||++.... +++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 75 ~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~h 152 (322)
T 3tzl_A 75 QKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQH 152 (322)
T ss_dssp TTSEEEEGGGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHH
T ss_pred cceEEEECCcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHH
Confidence 9999999999999999999999999999999999999876543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhh
Q 014464 235 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314 (424)
Q Consensus 235 ieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~ 314 (424)
+++|||+|+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||
T Consensus 153 i~l~Rdia~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~ 215 (322)
T 3tzl_A 153 VEIARDIALKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQIS 215 (322)
T ss_dssp HHHHHHHHHHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHH
Confidence 9999999999999998 57999999996555899999 67 79999986 58999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChH
Q 014464 315 RCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA 391 (424)
Q Consensus 315 kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s-~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~ 391 (424)
+|+||+.+. + ++++|++++++.|+++|+ ++++++++++|. +++++++|+.||+.|+++|+|||+||+++++|++
T Consensus 216 ~a~td~~~~--~-~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~ 292 (322)
T 3tzl_A 216 SIVTDSTAL--E-DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPS 292 (322)
T ss_dssp TCCCCCCCT--T-SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHH
T ss_pred hccCCCccc--c-CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHH
Confidence 999999865 2 357799999999999995 557899999997 6899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014464 392 YLDKVLADGAAKAADIADATLNNVYQAMGF 421 (424)
Q Consensus 392 ~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl 421 (424)
+|++||++|++|||++|++||++||++|||
T Consensus 293 ~l~~il~~G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 293 HLKEILDFGATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-86 Score=668.78 Aligned_cols=321 Identities=44% Similarity=0.699 Sum_probs=292.8
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-C-ceEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~lA~G 151 (424)
++|||||+|||.+|||||+|+|++|+.+ |+ | ++++|+||||||+|++ .+++.+++++++++++|+|+|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~l--------Q~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~G 73 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAI--------GEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAG 73 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHH--------HHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHH--------HhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999 77 5 9999999999999987 799999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecccch
Q 014464 152 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 231 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG~DQ 231 (424)
+||+|++||+||+|++|.++.|+++|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||
T Consensus 74 ldp~k~~i~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ 151 (337)
T 2el7_A 74 LDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQ 151 (337)
T ss_dssp CCTTTSEEEEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGG
T ss_pred CChhheEEEEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccch
Confidence 999999999999999999999999999999999999999986543 367999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHH
Q 014464 232 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 311 (424)
Q Consensus 232 ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~k 311 (424)
+||++++||||+|||+.|| ++|++|+++++.++++|||| +|++|||||++ |+|+|+|+|++|++
T Consensus 152 ~~~i~l~rdla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~ 215 (337)
T 2el7_A 152 VQHIELTREIARRFNHLFG------------ETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQ 215 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcC------------cccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHH
Confidence 9999999999999999998 56899999998766799999 55789999986 58999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014464 312 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 388 (424)
Q Consensus 312 KI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~ 388 (424)
||++|+||+.+++.+++.+ |++||++.||++|++. ++++|+++|. +++++++|+.||+.|+++|+|+|++|+++++
T Consensus 216 Ki~~a~td~~~~~~~~~~~-p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~ 294 (337)
T 2el7_A 216 KIQHLPDDPQRIRLSDPGD-PERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKK 294 (337)
T ss_dssp HHHTCCCCC--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCccccccCCCC-CchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence 9999999999888887755 9999999999999987 9999999998 6899999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 014464 389 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 423 (424)
Q Consensus 389 ~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~ 423 (424)
|+++|++||++|++|||++|++||++||++|||.+
T Consensus 295 ~~~~l~~il~~G~~~a~~~a~~~~~~v~~~~g~~~ 329 (337)
T 2el7_A 295 DPDYVMDALLEGAKRARAVAQATMEEVREKVGLLL 329 (337)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999853
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=3.9e-86 Score=668.52 Aligned_cols=331 Identities=29% Similarity=0.428 Sum_probs=302.0
Q ss_pred CCCCCCCCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CCCHHHHHHHHHHHHHH
Q 014464 68 VASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAI 146 (424)
Q Consensus 68 ~~~~~~~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~ 146 (424)
.......++++||||+|||.+|||||+|+|++|+++ |+.++++|+||||||+++ +.+++++++++++++++
T Consensus 15 ~~~~~~~~~~vysG~~PTG~lHLGn~~g~l~~~~~l--------Q~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~ 86 (351)
T 1yi8_B 15 TPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRL--------QDEAELFVLLADVQALTDHFDRPEQVRENVLAVALD 86 (351)
T ss_dssp ------CCSEEEEEECCSSCCBHHHHHHTHHHHHHH--------TSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEeeCCCCCccHHHHHHHHHHHHHH--------HHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHH
Confidence 333335679999999999999999999999999999 888999999999999998 68999999999999999
Q ss_pred HHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhccccceE
Q 014464 147 YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFV 225 (424)
Q Consensus 147 ~lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~~~ad~v 225 (424)
|+|+|+||+|++||+||+|++|.++.|+|+|.+++++|+|+++||++....+ .+++++|+|+||+||||||++|++|+|
T Consensus 87 ~la~Gldp~k~~i~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~v 166 (351)
T 1yi8_B 87 YLAAGLDPQKTTCVVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLV 166 (351)
T ss_dssp HHHHTCCTTTEEEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHhCCChhhcEEEEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEE
Confidence 9999999999999999999999999999999999999999999999876554 367899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCC
Q 014464 226 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 305 (424)
Q Consensus 226 pvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~ 305 (424)
|||.||+||++++||||+|||+.|| ++|++|+++++. .++|||| ||++|||||++ |+|+|+|+
T Consensus 167 pvG~DQ~~hi~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~ 229 (351)
T 1yi8_B 167 PVGDDQLPMLEQTREIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDS 229 (351)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCC
T ss_pred EecCCcHHHHHHHHHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCC
Confidence 9999999999999999999999998 568999998863 3799999 78779999986 58999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC-CC-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHH
Q 014464 306 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQV 381 (424)
Q Consensus 306 ~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s-~~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pire 381 (424)
|++|++||++|+||+.+.+.+++ ++|++++++.++.+++ +. ++++|+++|. +++|+++|+.||+.|+++|+|+|+
T Consensus 230 p~~i~~Ki~~a~td~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire 308 (351)
T 1yi8_B 230 ADEVARKVMGMYTDPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRT 308 (351)
T ss_dssp HHHHHHHHHTCCCCTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999988777776 4577788888888886 33 4589999997 589999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Q 014464 382 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424 (424)
Q Consensus 382 r~~~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~~~ 424 (424)
||+++++|+++|++||++|++|||++|++||++||++|||.++
T Consensus 309 ~~~~~~~~~~~l~~il~~G~~~a~~~a~~t~~~v~~~~g~~~~ 351 (351)
T 1yi8_B 309 RRAEYERDPDAVLRFVTEGTARGREVAAQTLGQVRRAMRLFGH 351 (351)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 9999999999999999999999999999999999999999753
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-86 Score=665.98 Aligned_cols=320 Identities=37% Similarity=0.576 Sum_probs=296.5
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~lA~G 151 (424)
..+++|+|++|||.+|||||+|+|++|+.+ |+ |++++|+||||||+|+ +.||+.+++++++++++|+|||
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~l--------Q~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~G 82 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKL--------QEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACG 82 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHH--------HHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHH--------HHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999 76 6999999999999997 6799999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHH---HhHhhCCCCccccchhhhHHHHhhhhccccceEecc
Q 014464 152 IDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 228 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~---~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG 228 (424)
+||+|++||+||+|++|.++.|+++|.+++++|+|+++||+ +... .+++++|+|+||+||||||++|++|+||||
T Consensus 83 ldp~k~~if~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG 160 (340)
T 2g36_A 83 IDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVG 160 (340)
T ss_dssp CCTTTSEEEEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEEC
T ss_pred CChhHeEEEECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcc
Confidence 99999999999999999999999999999999999999998 5432 257899999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014464 229 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308 (424)
Q Consensus 229 ~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~ 308 (424)
.||+||++++||||+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++
T Consensus 161 ~DQ~~hi~l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~ 222 (340)
T 2g36_A 161 EDQVYHIELTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKE 222 (340)
T ss_dssp GGGHHHHHHHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHH
T ss_pred cchHHHHHHHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHH
Confidence 9999999999999999999998 569999988753 3799999 575 9999986 68999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC-C-CHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-K-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 309 I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~-~-~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
|++||++|+||+.+.+.+++ ++|++||++.||++|++ . ++++++++|. .++++++|+.||+.|+++|+|||+||+
T Consensus 223 i~~Ki~~a~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~ 301 (340)
T 2g36_A 223 LEQTILRMMTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFR 301 (340)
T ss_dssp HHHHHHTCCCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888877 88999999999999985 3 4599999997 478999999999999999999999999
Q ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 014464 385 EIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 422 (424)
Q Consensus 385 ~~~~~~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~ 422 (424)
++++|+++|++||++|++|||++|++||++||++|||.
T Consensus 302 ~~~~~~~~~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 302 KIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999985
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=7.9e-72 Score=570.13 Aligned_cols=286 Identities=20% Similarity=0.280 Sum_probs=245.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHH-HHHHHhcccccccccc--CceEEEEEeccceecCC--CCHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL 148 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai-~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~l 148 (424)
+++++|||++|||.+|||||+|++ .+| + |+ +++++|+||||||++++ .+++++++++++++++|+
T Consensus 72 ~p~~i~sG~~PTG~lHLGh~v~~~~~~~--l--------Q~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~l 141 (392)
T 3jxe_A 72 RGFFLYTGRGPSGPMHIGHIIPFFATKW--L--------QEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDII 141 (392)
T ss_dssp CCCEEEEEECCSSCCBHHHHHHHHHHHH--H--------HHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCchhHHHHHHHHHHHH--H--------HHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999999999999986 555 4 65 78999999999999864 699999999999999999
Q ss_pred HcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhcc-ccceEec
Q 014464 149 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPV 227 (424)
Q Consensus 149 A~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~-~ad~vpv 227 (424)
|||+||+|++||+||+|+++.++.|.|++.++++++.++.+|+ +++++|+|+||+|||||||+| ++|+|||
T Consensus 142 A~GlDp~kt~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpv 213 (392)
T 3jxe_A 142 AVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPA 213 (392)
T ss_dssp TTCCCTTSEEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEE
T ss_pred HhCcCccceEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeec
Confidence 9999999999999999999999999999999999999887654 578999999999999999999 6999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 014464 228 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 307 (424)
Q Consensus 228 G~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e 307 (424)
|.||+||+++|||+|+||| +++|.+++++ +||||+++++|||||+|+ |+|+|+|+|+
T Consensus 214 G~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~~---~l~gLdG~~~KMSKS~~n--s~I~L~D~p~ 270 (392)
T 3jxe_A 214 AIDQDPYWRLQRDFAESLG------------------YYKTAALHSK---FVPSLTSLSGKMSASKPE--TAIYLTDSPE 270 (392)
T ss_dssp EGGGHHHHHHHHHHTGGGT------------------SCCCEEEEEC---CCCCSSCSSSCCCTTSGG--GCCBTTCCHH
T ss_pred ccchHHHHHHHHHHHHHcC------------------CCCCeeeecc---cccCCCCCccccccCCCC--CeeeCCCCHH
Confidence 9999999999999999988 4678888754 999996555799999974 7999999999
Q ss_pred HHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHH
Q 014464 308 VIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPI 379 (424)
Q Consensus 308 ~I~kKI~k-A~Td~~~~i~~~~--~~rpe~~nll~i~~~~s---~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pi 379 (424)
+|++|||+ |+||+.+++++++ +++|++++++.||.+++ ++++++++++|. +++|++||+.||++|+++|+||
T Consensus 271 ~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pi 350 (392)
T 3jxe_A 271 DVEKKVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEH 350 (392)
T ss_dssp HHHHHHHTCC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999 9999987776643 68999999999999885 457899999997 4899999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHHHHH
Q 014464 380 QVRYEEIMSDSAYLDKVLADGAAK 403 (424)
Q Consensus 380 rer~~~~~~~~~~l~~IL~~Ga~k 403 (424)
|+||+++. ++|+++|..|+.+
T Consensus 351 rer~~~~~---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 351 QRRRKKAE---KLVEKFKYTGKLA 371 (392)
T ss_dssp HHHHHHHT---TSHHHHHTTSHHH
T ss_pred HHHHHHHH---HHHHHHHHcCccc
Confidence 99999998 5899999999875
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=2.6e-69 Score=549.37 Aligned_cols=281 Identities=27% Similarity=0.366 Sum_probs=244.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~~~~lA~G 151 (424)
++++||||++|||.+|||||+|+++ |+.+| |++++|+|+||||||+|++. +++.+++++++++++|+|||
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~~-~~~lq-------~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~G 140 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVDQ-LIYLQ-------KNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALG 140 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHHH-HHHHH-------HTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHT
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHHH-HHHHH-------hCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4799999999999999999998765 55552 56899999999999999854 66789999999999999999
Q ss_pred ccCCceEEEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhc--------ccc
Q 014464 152 IDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQS 222 (424)
Q Consensus 152 lDp~k~~if~QS~-v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~--------~~a 222 (424)
|||+|++||+||+ ++++.++.|.+++.+++++++++.+ ..+.|.++||+|||||||+ |++
T Consensus 141 lDP~kt~if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a 209 (372)
T 3a04_A 141 LDPKDTEFYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRH 209 (372)
T ss_dssp CCTTTCEEEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC
T ss_pred CChHHcchhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccc
Confidence 9999999999999 5789999999999999999987632 4578999999999999999 566
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
++||||.||+||+|||||||+|||+.|+ +++|..++++ ++||| +| .|||||+| +|+|+|
T Consensus 210 ~~VPVG~DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~l 268 (372)
T 3a04_A 210 VVVPVGADQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIFL 268 (372)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCBT
T ss_pred eecccchhhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--Cccccc
Confidence 6999999999999999999999998886 7889888875 89999 66 69999997 499999
Q ss_pred CCCHHHHHHHhhhccCCCCCCcccC--CCCCCccchHHHHH--Hhc-CCCCHHHHHHHHh--cCChhhHHHHHHHHHHHh
Q 014464 303 LDPKDVIANKIKRCKTDSSAGLEFD--NLERPECNNLLSIY--QLI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEH 375 (424)
Q Consensus 303 ~D~~e~I~kKI~kA~Td~~~~i~~~--~~~rpe~~nll~i~--~~~-s~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~ 375 (424)
+|+|++|++|||+|+||+..+.+.. .+++|+++++++++ .++ +++++++++++|+ +++|++||+.|++.|+++
T Consensus 269 ~D~p~~i~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~ 348 (372)
T 3a04_A 269 TDPPEVARNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERF 348 (372)
T ss_dssp TCCHHHHHHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998776543 36889999998753 333 3457899999997 699999999999999999
Q ss_pred hhHHHHHHHHHhcChHHHHHHH
Q 014464 376 LHPIQVRYEEIMSDSAYLDKVL 397 (424)
Q Consensus 376 L~pirer~~~~~~~~~~l~~IL 397 (424)
|+|+|+||++. +++++++|
T Consensus 349 l~p~rer~e~~---~~~~~kil 367 (372)
T 3a04_A 349 LAEHQSRLEKA---KTIAWKLV 367 (372)
T ss_dssp HHHHHHHHHHH---HHHHHTSC
T ss_pred HHHHHHHHHHh---HHHHHHHh
Confidence 99999999864 34566554
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=6.7e-67 Score=531.62 Aligned_cols=279 Identities=20% Similarity=0.284 Sum_probs=240.2
Q ss_pred CCceEEEecCCCCcchhhhhHHHHH--HHHHhcccccccccc-CceEEEEEeccceecCC---CCHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIK--NWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~--~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~ 147 (424)
++++||+||+|||.+|||| |+++ +|+.+ |+ |++++|+||||||++++ .+++++++++.+++++|
T Consensus 55 ~~~~iy~G~~PTg~lHlG~--gvl~~~~~~~l--------Q~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~ 124 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQ--GLLKSIIVNKL--------TSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVW 124 (373)
T ss_dssp SSCEEEEEECCCSSCBHHH--HHHHHHHHHHH--------HTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCCceehh--hHHHHHHHHHH--------HHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999 4444 46777 77 79999999999999974 58999999999999999
Q ss_pred HHcCccCCceEEEEcCCcc-hhhHHHHHHhc----cccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhcccc
Q 014464 148 LACGIDNSKASVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS 222 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v~-~~~el~wiL~~----~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~a 222 (424)
+|+|+||+|++||+||+|+ +|.+++|.+.+ .++++|+.++.+++.+. . .+++++|+|+||+||||||++|++
T Consensus 125 ~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~--~-~~~~~~g~f~YPlLQaaDil~l~a 201 (373)
T 3vgj_A 125 KSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRS--E-GEENYCSQILYPCMQCADIFFLNV 201 (373)
T ss_dssp HHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCC--T-TSCCBTHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhh--c-cCCCChHHHHHHHHHHhcccccCC
Confidence 9999999999999999998 89999998765 67999999998887432 1 257899999999999999999999
Q ss_pred ceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeec
Q 014464 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302 (424)
Q Consensus 223 d~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L 302 (424)
|+||||.||+||++++||+|+|||++|+ |..+.. ++||||+||++|||||+| +|+|+|
T Consensus 202 d~vpgG~DQ~~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L 259 (373)
T 3vgj_A 202 DICQLGIDQRKVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFM 259 (373)
T ss_dssp SEECCBGGGHHHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBT
T ss_pred cEEEcchhhHHHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeec
Confidence 9999999999999999999999996543 444443 599999889889999997 489999
Q ss_pred CCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHh--------c------------CCCCHHHHHHHHh--cCC
Q 014464 303 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMN 360 (424)
Q Consensus 303 ~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~--------~------------s~~~~eel~~~y~--~l~ 360 (424)
+|+|++|++|||+|+||+. +++.|+++.++++ | +++++++++++|. +++
T Consensus 260 ~D~p~~i~~KI~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~ 330 (373)
T 3vgj_A 260 DDSESDVNRKIKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIH 330 (373)
T ss_dssp TCCHHHHHHHHHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSC
T ss_pred CCCHHHHHHHHHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCC
Confidence 9999999999999999863 3455666665432 2 2468999999997 589
Q ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014464 361 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 396 (424)
Q Consensus 361 ~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~I 396 (424)
|++||++||++|+++|+|||++|++..+.++++++|
T Consensus 331 ~~dlK~~lae~i~~~l~Pire~~~~~~~~~~~l~~v 366 (373)
T 3vgj_A 331 PLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEI 366 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 999999999999999999999999877666666655
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.8e-67 Score=536.51 Aligned_cols=274 Identities=22% Similarity=0.287 Sum_probs=243.5
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCC---CCHHHHHHHH-HHHH----H
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----A 145 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~-~~~~----~ 145 (424)
++++|+||+|||.+|||||+++|++|+.+ |+ |++++|+||||||++++ .+++++++++ .+++ +
T Consensus 33 ~~~vy~G~~PTg~lHlG~yl~~l~~~~~l--------Q~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~ 104 (375)
T 2cyc_A 33 PLQHYIGFEISGYIHLGTGLMAGAKIADF--------QKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEK 104 (375)
T ss_dssp CCBEEEEECCCSCCBHHHHHHHHHHHHHH--------HHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHH
T ss_pred CcEEEeCCCCCCCcCchHHHHHHHHHHHH--------HHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999 76 69999999999999985 3899999999 8888 9
Q ss_pred HHHHcCccCCceEEEEcCCcchhhHHHHHH----hccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccc
Q 014464 146 IYLACGIDNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 221 (424)
Q Consensus 146 ~~lA~GlDp~k~~if~QS~v~~~~el~wiL----~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ 221 (424)
+|+|||+||+|++||+||+|++|. ++|.+ ++.++++||.|+.+||++. . .+++++|+|+||+||||||++|+
T Consensus 105 ~~la~G~dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~ 180 (375)
T 2cyc_A 105 SIEVMGGDPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQG 180 (375)
T ss_dssp HHHHTTCCGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999998 89998 9999999999999999643 2 25689999999999999999999
Q ss_pred cceEecccchHHHHHHHHHHHHHHhh---hh-CCccccccCCCCCccccCCceecCCCCcccccCCCC------------
Q 014464 222 SDFVPVGEDQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG------------ 285 (424)
Q Consensus 222 ad~vpvG~DQ~~hieLaRdia~r~n~---~~-g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg------------ 285 (424)
+|+||||.||+||+++|||+|+|||+ .| | +.| +|..+.. ++||||++|
T Consensus 181 ~~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g------------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~ 244 (375)
T 2cyc_A 181 VTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEG------------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEFK 244 (375)
T ss_dssp CSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETT------------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHH
T ss_pred CCeecccchHHHHHHHHHHHHHHhCCccccccc------------ccC-ccEEecc---ccccCCCCcccccccchhhhh
Confidence 99999999999999999999999996 23 2 112 5665543 599999654
Q ss_pred ----CCccccCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC----------------
Q 014464 286 ----LSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------- 345 (424)
Q Consensus 286 ----~~KMSKS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s---------------- 345 (424)
++|||||+|+ |+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+
T Consensus 245 ~~~~~~KMSKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~ 313 (375)
T 2cyc_A 245 EIKAQMKMSKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKF 313 (375)
T ss_dssp HHHHHHBGGGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGG
T ss_pred hhhhhhcccCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhc
Confidence 4899999974 899999999999999999999863 456788999998774
Q ss_pred -----CCCHHHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHHh
Q 014464 346 -----GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 387 (424)
Q Consensus 346 -----~~~~eel~~~y~~--l~~~dlK~~Lae~I~~~L~pirer~~~~~ 387 (424)
++++++|+++|.+ ++|+++|+.||+.|+++|+|+|++|++..
T Consensus 314 gg~~~~~~~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~ 362 (375)
T 2cyc_A 314 GGDVTYTTFEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHP 362 (375)
T ss_dssp TCCEEESSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCC
T ss_pred cCcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 4579999999984 89999999999999999999999998643
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=4.3e-67 Score=529.04 Aligned_cols=268 Identities=19% Similarity=0.247 Sum_probs=225.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~~~~lA 149 (424)
.++++||||+|||.+|||||++++++|+.+ |+ |++++|+||||||++++. ++++++++++++++.|+|
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~l--------Q~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la 110 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNM--------IECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKA 110 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHH--------HHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHH--------HHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999 76 799999999999999853 899999999999999999
Q ss_pred cCccCCceEEEEcCCc-chhhHHHHHHhc----cccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhcc---c
Q 014464 150 CGIDNSKASVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---Q 221 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v-~~~~el~wiL~~----~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~---~ 221 (424)
+|+||+|+.||+||+| ++|. ++|.+.+ .++++++.++.+++.+. . .+++++|+|+||+||||||++| +
T Consensus 111 ~Gldp~k~~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~--~-~~~i~~g~f~YP~lQaaDil~~~~~~ 186 (348)
T 2j5b_A 111 CGINLDGTRFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN--E-SDCLKASQIFYPCMQAADVFELVPEG 186 (348)
T ss_dssp TTCCGGGEEEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTC
T ss_pred hcCCccceEEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh--c-cCCcChHHHhhHHHHHHHHHHHhcCC
Confidence 9999999999999997 6676 8998775 77888888877777532 1 2568999999999999999999 9
Q ss_pred cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceee
Q 014464 222 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301 (424)
Q Consensus 222 ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~ 301 (424)
+|+||||.||+||++++||+|+|||+. .|..+.. ++||||+||++|||||+|+ |+|+
T Consensus 187 ~~~~~~G~DQ~~~i~l~Rdia~r~~~~------------------~p~~~~~---~~l~gL~dg~~KMSKS~~~--~~I~ 243 (348)
T 2j5b_A 187 IDICQLGIDQRKVNMLAIEYANDRGLK------------------IPISLSH---HMLMSLSGPKKKMSKSDPQ--GAIF 243 (348)
T ss_dssp CSEECCBGGGHHHHHHHHHHHHHTTCC------------------CCEEEEB---CCCCCTTCSSCCCSTTCGG--GSCB
T ss_pred CcEEEeccChHHHHHHHHHHHHHhCCC------------------CceeecC---ccccCCCCcccccccCCCC--CeEe
Confidence 999999999999999999999999842 2554443 5999998888899999874 8999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHh-------------cCCCCHHHHHHHHhcCChhhHHHHH
Q 014464 302 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL-------------ISGKTKGEVAEECQNMNWGTFKPLL 368 (424)
Q Consensus 302 L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~-------------~s~~~~eel~~~y~~l~~~dlK~~L 368 (424)
|+|+|++|++|||+|+||+. .++ |+++.|+.+ ++++++++|+++|.+++|+++|+.|
T Consensus 244 L~d~p~~i~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~l 313 (348)
T 2j5b_A 244 MDDTEQEVSEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDV 313 (348)
T ss_dssp TTCCHHHHHHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHH
T ss_pred ecCCHHHHHHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHH
Confidence 99999999999999999874 356 778877765 3467899999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 014464 369 TDALIEHLHPIQVRYEEI 386 (424)
Q Consensus 369 ae~I~~~L~pirer~~~~ 386 (424)
|++|+++|+|||++|++.
T Consensus 314 a~~l~~~l~pir~~~~~~ 331 (348)
T 2j5b_A 314 ANYINTIIDLVREHFKKP 331 (348)
T ss_dssp HHHHHHHHHHHHHHTTSG
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999999765
No 15
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.1e-66 Score=528.96 Aligned_cols=269 Identities=21% Similarity=0.283 Sum_probs=235.9
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA 149 (424)
.++++|+||+|||.+|||| +++|++|+.+ |+ |++++|+||||||++++ .+++.+++++++++++|+|
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~l--------Q~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la 104 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDL--------VEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEA 104 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHH--------HHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHH--------HHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 8999999999 77 69999999999999985 6999999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceE
Q 014464 150 CGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 225 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~~~el~wi----L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~v 225 (424)
+|+||+|++||+||+|++| +++|. ++|.+++++|.|+.+|+++.. +++++++|+|+||+||||||++|++|+|
T Consensus 105 ~G~dp~k~~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v 181 (364)
T 2cya_A 105 AGVPVERVRFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIA 181 (364)
T ss_dssp TTCCGGGCEEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEE
T ss_pred hCCCccceEEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEE
Confidence 9999999999999999988 67887 999999999999999997543 2245899999999999999999999999
Q ss_pred ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCC---------------CCCccc
Q 014464 226 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMS 290 (424)
Q Consensus 226 pvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~d---------------g~~KMS 290 (424)
|||.||+||++++||+|+||| +++|..++. ++||||++ |++|||
T Consensus 182 ~~G~DQ~~~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMS 240 (364)
T 2cya_A 182 LGGMDQRKAHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMS 240 (364)
T ss_dssp EEEGGGHHHHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCC
T ss_pred eccchHHHHHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccC
Confidence 999999999999999999988 346776654 49999964 368999
Q ss_pred cCCCCCCceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---------------------CCCH
Q 014464 291 KSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTK 349 (424)
Q Consensus 291 KS~p~~~s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s---------------------~~~~ 349 (424)
||+++ |+|+|+|+|++|++||++|+||+. +++.|+++.|+++|+ ++++
T Consensus 241 KS~~~--~~I~L~d~p~~i~~Ki~~a~td~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~ 309 (364)
T 2cya_A 241 KSKPE--TAVFVVDSDDDIRRKIRKAYCPAK---------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSY 309 (364)
T ss_dssp SSSGG--GSCBTTCCHHHHHHHHHTSCCCTT---------CCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSH
T ss_pred CCCCC--CEeeccCCHHHHHHHHHhCcCCCC---------CCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHH
Confidence 99874 899999999999999999999864 446688999998764 2489
Q ss_pred HHHHHHHhc--CChhhHHHHHHHHHHHhhhHHHHHHHHH
Q 014464 350 GEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEI 386 (424)
Q Consensus 350 eel~~~y~~--l~~~dlK~~Lae~I~~~L~pirer~~~~ 386 (424)
++|+++|.+ ++|++||+.||+.|+++|+|+|++|++.
T Consensus 310 ~el~~~~~~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 310 EELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999984 8999999999999999999999999843
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=7.7e-68 Score=547.19 Aligned_cols=302 Identities=16% Similarity=0.208 Sum_probs=251.1
Q ss_pred CCceEEEecCCC-CcchhhhhHHHHHHHHHhcccccccccc--CceEEEEEeccceecCC--CCHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYL 148 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~l 148 (424)
+++++|+||+|| |.+|||||++++. + +|+|+ ++.++|+|||+||++.+ .+++.+++++.+++++|+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~----l-----~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~l 171 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVF----T-----KWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDII 171 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHH----H-----HHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHH----H-----HHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHH
Confidence 378999999999 8999999997652 2 23375 78899999999998863 589999999999999999
Q ss_pred HcCccCCceEEEEcCCcc--hhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhc------
Q 014464 149 ACGIDNSKASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL------ 219 (424)
Q Consensus 149 A~GlDp~k~~if~QS~v~--~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~------ 219 (424)
|+|+||+|++||+||+|+ .+.++.|. ++||+++++++++.+ .+++++|+|+||+||||||++
T Consensus 172 A~GlDp~k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~ 242 (432)
T 2ip1_A 172 AVGFDPKNTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNV 242 (432)
T ss_dssp TTTCCGGGEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTT
T ss_pred HhCCCCCceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchh
Confidence 999999999999999997 67777773 579999999887764 467899999999999999999
Q ss_pred -----cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 220 -----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 220 -----~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
|++++||||.||++|++++||+|+||| |++|..++. ++||||+++++|||||.+
T Consensus 243 ~~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~ 301 (432)
T 2ip1_A 243 LGLPDKTPCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD 301 (432)
T ss_dssp TCCCTTCCEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG
T ss_pred hcccCCCceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC
Confidence 679999999999999999999999988 467887654 599999654579999987
Q ss_pred CCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CChhhHHHH
Q 014464 295 SDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPL 367 (424)
Q Consensus 295 ~~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~~~--~~rpe~~nll~i~~~~s--~~~~eel~~~y~~--l~~~dlK~~ 367 (424)
+ ++|+|+|+|++|++||++ |+||+..+..+++ +++|++++++.|+.+|+ ++++++|+++|.+ ++++++|+.
T Consensus 302 n--saI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~ 379 (432)
T 2ip1_A 302 T--TAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKL 379 (432)
T ss_dssp G--GCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred C--CeEeccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 699999999999999999 9999875544333 38899999999999884 5578889999973 899999999
Q ss_pred HHHHHHHhhhHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014464 368 LTDALIEHLHPIQVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 416 (424)
Q Consensus 368 Lae~I~~~L~pirer~~~~~~~----~~~l~~IL~~Ga~kAr~iA~~Tl~~Vr 416 (424)
||+.|+++|+|+|+||+++.++ +.++++++.+|++|||++|++||++|+
T Consensus 380 La~~i~~~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 380 CIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999988 788999999999999999999999986
No 17
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.5e-65 Score=525.58 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=241.0
Q ss_pred CCceEEEecCCCC-cchhhhhHHH-HHHHHHhcccccccccc--CceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYL 148 (424)
Q Consensus 74 ~~~~i~sGi~PTG-~lHLGnylga-i~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~l 148 (424)
+++++|||++||| .+|||||+|+ +.+| | |+ ++.++|+|||+||++. +.+++++++++++++++|+
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--l--------Q~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~l 169 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKY--M--------QDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIV 169 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHH--H--------HHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999998 7999999998 4555 4 66 6788999999999865 5799999999999999999
Q ss_pred HcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhh--------c
Q 014464 149 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------L 219 (424)
Q Consensus 149 A~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl--------~ 219 (424)
|||+||+|+.||.||+|++ .+..++++|.|+++|+++.++.+ .+++++|+|+||+|||||++ .
T Consensus 170 A~GlDp~k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~ 241 (406)
T 3tze_A 170 TLGFDPKLTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGK 241 (406)
T ss_dssp TTTCCGGGEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCT
T ss_pred HcCCCccceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhcc
Confidence 9999999999999999986 23457889999999999988876 46799999999999999954 5
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~-~KMSKS~p~~~s 298 (424)
+++|+||||.||+||+++|||+|+||| +++|..+.. ++|||| +|. +|||||+| +|
T Consensus 242 ~~a~lvpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~ 297 (406)
T 3tze_A 242 GAMCLVPAAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NS 297 (406)
T ss_dssp TCEEEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GG
T ss_pred CCCeEEeeccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CC
Confidence 689999999999999999999999988 567887754 599999 554 69999987 48
Q ss_pred eeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCChhhHHHHHHHH
Q 014464 299 RINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDA 371 (424)
Q Consensus 299 ~I~L~D~~e~I~kKI~k-A~Td~~~~i~~--~~~~rpe~~nll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~ 371 (424)
+|+|+|+|++|++|||+ |+||+..++++ +++++|++||++.||++|+ ++++++++++|. +++|++||+.||++
T Consensus 298 ~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~ 377 (406)
T 3tze_A 298 SIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVV 377 (406)
T ss_dssp SCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99999888776 4579999999999999996 457999999996 58999999999999
Q ss_pred HHHhhhHHHHHHHHHhcC
Q 014464 372 LIEHLHPIQVRYEEIMSD 389 (424)
Q Consensus 372 I~~~L~pirer~~~~~~~ 389 (424)
|+++|+|||+||+++++|
T Consensus 378 i~~~l~pirer~~~~~~d 395 (406)
T 3tze_A 378 IQEFVSRYQESRKRVTDD 395 (406)
T ss_dssp HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998754
No 18
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=4.6e-65 Score=519.27 Aligned_cols=279 Identities=16% Similarity=0.212 Sum_probs=244.3
Q ss_pred CCceEEEecCCCCcchhhhhHHH-HHHHHHhcccccccccc--CceEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylga-i~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA 149 (424)
+++++||||+|||.+|||||+|+ +.+| | |+ ++.++|+|+|+||++.+ .+++++++++++++++|+|
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~--l--------Q~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA 150 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARY--L--------QDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILA 150 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHH--H--------HHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHH--H--------HHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999998 5666 5 66 67889999999999975 7999999999999999999
Q ss_pred cCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhh--------cc
Q 014464 150 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LY 220 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl--------~~ 220 (424)
||+||+|++||+||+|++ .|..++++|.|+++|+++.++.+ .+++++|+|+||+||||||+ .+
T Consensus 151 ~GlDp~kt~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~ 222 (386)
T 3hzr_A 151 FGFNEDKTFIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS 222 (386)
T ss_dssp TCCCGGGEEEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSS
T ss_pred cCCCCcceEEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCC
Confidence 999999999999999986 55677899999999999988776 46799999999999999776 46
Q ss_pred c-cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 221 Q-SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 221 ~-ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
+ +|+||||.||+||+++|||+|+||| +++|..+.. ++|||| +|.+|||||++ +|+
T Consensus 223 ~~a~~VpvG~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~ 278 (386)
T 3hzr_A 223 PARCLVLDSIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNS 278 (386)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTS
T ss_pred CCccccccccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCe
Confidence 6 9999999999999999999999998 457755533 599999 55569999987 499
Q ss_pred eecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCChhhHHHHHHHHH
Q 014464 300 INLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDAL 372 (424)
Q Consensus 300 I~L~D~~e~I~kKI~k-A~Td~~~~i~~--~~~~rpe~~nll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I 372 (424)
|+|+|+|++|++|||+ |+||++.+.+. ..+++|+++++++||.+++ ++++++++++|+ +++|++||+.||++|
T Consensus 279 I~L~D~p~~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i 358 (386)
T 3hzr_A 279 ILLSDNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASM 358 (386)
T ss_dssp CBTTCCHHHHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred eecCCCHHHHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999 99998765432 3468899999999999985 457899999997 589999999999999
Q ss_pred HHhhhHHHHHHHHHhcChHHHHHH
Q 014464 373 IEHLHPIQVRYEEIMSDSAYLDKV 396 (424)
Q Consensus 373 ~~~L~pirer~~~~~~~~~~l~~I 396 (424)
+++|+|||+||+++.+| .|++.
T Consensus 359 ~~~l~pirer~~~~~~~--~~~~~ 380 (386)
T 3hzr_A 359 KDFIVAYDAKKKPITTA--YLKAY 380 (386)
T ss_dssp HHHHHHHHHHHTTCCHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHH
Confidence 99999999999988753 45543
No 19
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.5e-64 Score=547.93 Aligned_cols=291 Identities=21% Similarity=0.313 Sum_probs=247.4
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~~~~lA 149 (424)
++++|||||+|||.+||||++....+|..+ |+ |++++|+||||||++++ .+++++++++.+++++|+|
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~l--------Q~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA 110 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKC--------TAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKA 110 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHH--------HHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHH--------HHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 368999999999999999954222246677 65 79999999999999973 5889999999999999999
Q ss_pred cCccCCceEEEEcCC-cchhhHHHHHHh----ccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccce
Q 014464 150 CGIDNSKASVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 224 (424)
Q Consensus 150 ~GlDp~k~~if~QS~-v~~~~el~wiL~----~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~ 224 (424)
+|+||+|++||+||+ +++|++++|.+. +.++++||.|+.+++.+. . +++++|+|+||+||||||++|++|+
T Consensus 111 ~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~--~--~~i~~g~f~YPlLQAaDil~~~ad~ 186 (690)
T 3p0j_A 111 AGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKT--E--GTLTAAQVLYPLMQCCDIFFLKADI 186 (690)
T ss_dssp TTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSE
T ss_pred cCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhc--c--CCCchhhHhhHHHHHHHHHhhCCCE
Confidence 999999999999999 689999999875 479999999999998632 2 2489999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014464 225 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 304 (424)
Q Consensus 225 vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 304 (424)
||||.||+||+++|||+|+|||+.|+ |..+.. ++||||+||++|||||+++ |+|+|+|
T Consensus 187 vpvG~DQ~~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~~--~~I~L~D 244 (690)
T 3p0j_A 187 CQLGLDQRKVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDPD--SAIFMED 244 (690)
T ss_dssp ECCBGGGHHHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBGG--GSCBTTC
T ss_pred EeccccHHHHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCCC--CeeeccC
Confidence 99999999999999999999996442 444443 5999998898899999873 8999999
Q ss_pred CHHHHHHHhhhccCCCCCCc--ccCCCCC----CccchHHHHHHhc--------------CCCCHHHHHHHHh--cCChh
Q 014464 305 PKDVIANKIKRCKTDSSAGL--EFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWG 362 (424)
Q Consensus 305 ~~e~I~kKI~kA~Td~~~~i--~~~~~~r----pe~~nll~i~~~~--------------s~~~~eel~~~y~--~l~~~ 362 (424)
+|++|++|||+|+||+.... +...++. +++|++++|+.++ +++++++++++|+ +++|+
T Consensus 245 ~p~~i~kKI~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~ 324 (690)
T 3p0j_A 245 TEEDVARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSED 324 (690)
T ss_dssp CHHHHHHHHHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHH
T ss_pred CHHHHHHHHHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHH
Confidence 99999999999999986521 1112233 5899999999986 3468999999997 48999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHH
Q 014464 363 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 398 (424)
Q Consensus 363 dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~IL~ 398 (424)
+||+.|+++|+++|+|||+||++..++++++++|+.
T Consensus 325 dlK~~lae~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 325 ALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 999999999999999999999999999999998865
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.3e-63 Score=510.05 Aligned_cols=281 Identities=20% Similarity=0.267 Sum_probs=233.2
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--CceEEEEEeccceecC--CCCHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai-~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~~~~ 147 (424)
+++++|+|++|| |.+|||||++++ .+| + |+ ++.++|+|||+|+.+. ..+++++++++++++++|
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--l--------Q~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~ 142 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--L--------QDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDI 142 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--H--------HHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--H--------HHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 368999999999 689999999887 344 4 77 5678999999999654 469999999999999999
Q ss_pred HHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhh-------c
Q 014464 148 LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------L 219 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl-------~ 219 (424)
+|+|+||+|++||.||+|++. +..++.++.|+++++++.+..+ ++++++|+|+||+||||||+ +
T Consensus 143 lA~GlDp~kt~i~~ns~~~~~--------~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~ 214 (393)
T 3hv0_A 143 IACGFDPELTFIFTNLEYIAE--------LYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIF 214 (393)
T ss_dssp HTTCCCTTTEEEEEHHHHHHH--------HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHH
T ss_pred HHcCCCCcceEEEECCHHHHH--------HHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHh
Confidence 999999999999999999752 1345678899999999887766 46899999999999999996 3
Q ss_pred c-c---cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014464 220 Y-Q---SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 295 (424)
Q Consensus 220 ~-~---ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 295 (424)
+ + +++||||.||+||++++||+|+||| +++|..+.. ++||||+++++|||||.++
T Consensus 215 ~~~~di~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~n 273 (393)
T 3hv0_A 215 GGRTDIHCLVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQN 273 (393)
T ss_dssp TTCSCCCEEEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC-------------C
T ss_pred cccCCCceecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCCC
Confidence 3 3 4899999999999999999999987 567877754 5999995444799999974
Q ss_pred CCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCChhhHHHHH
Q 014464 296 DQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLL 368 (424)
Q Consensus 296 ~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~~~--~~rpe~~nll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~L 368 (424)
|+|+|+|+|++|++|||+ |+||+..++++++ +++|++++++.||.++ +++++++++++|+ +++|++||+.|
T Consensus 274 --saI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~l 351 (393)
T 3hv0_A 274 --SSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSIL 351 (393)
T ss_dssp --CCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred --CeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHH
Confidence 799999999999999999 9999988887753 7899999999999998 4668999999997 68999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhcChHHHHHHH
Q 014464 369 TDALIEHLHPIQVRYEEIMSDSAYLDKVL 397 (424)
Q Consensus 369 ae~I~~~L~pirer~~~~~~~~~~l~~IL 397 (424)
+++|+++|+|+|+||+++++| .|++++
T Consensus 352 ae~i~~~l~pirer~~~~~~d--~~~~~~ 378 (393)
T 3hv0_A 352 VQELVKLTKNHQKNREAINDD--VIAKFT 378 (393)
T ss_dssp HHHHHHHHHHHHHHHHTCCHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHHh
Confidence 999999999999999999864 477765
No 21
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=3.7e-64 Score=514.24 Aligned_cols=287 Identities=17% Similarity=0.222 Sum_probs=218.3
Q ss_pred CCceEEEecCCCC-cchhhhhHHH-HHHHHHhcccccccccc--CceEEEEEeccceecC-CCCHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQPFCDLMLQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYL 148 (424)
Q Consensus 74 ~~~~i~sGi~PTG-~lHLGnylga-i~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~~~~l 148 (424)
+++++|+|++||| .+|||||+++ +.+| | |+ ++.++|+|+|+|++++ +.+++++++++++++++|+
T Consensus 77 ~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--l--------Q~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~l 146 (395)
T 3i05_A 77 QPFYLYTGRGPSSESMHMGHLIPFMFTKW--L--------QDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDII 146 (395)
T ss_dssp CCEEEEEEECCCSSCCBGGGSHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCccchHHHHHHHHHHHH--H--------HHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999 6999999987 3344 4 77 5778999999977664 6799999999999999999
Q ss_pred HcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHh--------hhhc
Q 014464 149 ACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILL 219 (424)
Q Consensus 149 A~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAA--------DIl~ 219 (424)
|||+||+|+.||.||+|.+ .|+ ..+++|.|+++++++.+..+ .+++++|+|+||+|||| ||++
T Consensus 147 A~GlDp~kt~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll 218 (395)
T 3i05_A 147 AMGFDPELTFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFP 218 (395)
T ss_dssp TTTCCTTSEEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSC
T ss_pred HcCCCCCceEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhc
Confidence 9999999999999999976 222 45779999999999988776 46799999999999999 6778
Q ss_pred cc----cceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014464 220 YQ----SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 295 (424)
Q Consensus 220 ~~----ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~ 295 (424)
|+ +|+||||.||+||++++||+|+||| +++|..+.. ++||||+++++||||| +
T Consensus 219 ~~~~~~~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~- 275 (395)
T 3i05_A 219 PSMGNVFCLIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S- 275 (395)
T ss_dssp GGGCCCEEEEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC-------------
T ss_pred ccccCCceEEEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C-
Confidence 98 9999999999999999999999988 356776654 5999995444799999 4
Q ss_pred CCceeecCCCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCChhhHHHHH
Q 014464 296 DQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLL 368 (424)
Q Consensus 296 ~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~--~~~~rpe~~nll~i~~~~--s~~~~eel~~~y~--~l~~~dlK~~L 368 (424)
+|+|+|+|+|++|++|||+ |+||+..++++ +++++|++||++.||.+| +++++++++++|+ +++|++||+.|
T Consensus 276 -~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~l 354 (395)
T 3i05_A 276 -GTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLL 354 (395)
T ss_dssp ---CCBTTCCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHH
T ss_pred -CCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHH
Confidence 6999999999999999999 99999877654 567999999999999999 5668999999997 48999999999
Q ss_pred HHHHHHhhhHHHHHHHHHhcChHHHHHHHH----HHHHHH
Q 014464 369 TDALIEHLHPIQVRYEEIMSDSAYLDKVLA----DGAAKA 404 (424)
Q Consensus 369 ae~I~~~L~pirer~~~~~~~~~~l~~IL~----~Ga~kA 404 (424)
++.|+++|+|||+||+++.+| .|++.+. .||+||
T Consensus 355 ae~i~~~l~pirer~~~~~~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 355 INTITAITKTHQEKRKLVTDE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HHHHHHHHHHHHHHHTTCCHH--HHHHHHSCCCCTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh--HHHHHhChhcccchhhh
Confidence 999999999999999998854 5666654 566654
No 22
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.1e-62 Score=492.38 Aligned_cols=264 Identities=24% Similarity=0.341 Sum_probs=236.3
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~G 151 (424)
+++++|+||+|||.+||||+ +++++|+.+ |+ +++++|+||||||++.+. +++++++++++++++|+|+|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~l--------q~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~G 101 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDL--------QEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALG 101 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHH--------HHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHH--------HHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 36799999999999999985 799999999 77 799999999999999865 99999999999999999999
Q ss_pred ccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEecc
Q 014464 152 IDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 228 (424)
Q Consensus 152 lDp~k~~if~QS~v~---~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpvG 228 (424)
+||+|++||+||+|+ ++.++.|.++|.++++++.|+.+++.+ .. +..++|+|+||+||||||++|++|+||||
T Consensus 102 ldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G 177 (323)
T 2cyb_A 102 LDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGG 177 (323)
T ss_dssp CCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEec
Confidence 999999999999996 789999999999999999998776532 11 34599999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHH
Q 014464 229 EDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308 (424)
Q Consensus 229 ~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~ 308 (424)
.||++|++++|++|++||+ +.|..++. ++||+| +| +||||| + +|+|+|+|+|++
T Consensus 178 ~DQ~~~~~l~rdla~~~~~------------------~~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~ 231 (323)
T 2cyb_A 178 IDQRKIHMLARENLPRLGY------------------SSPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEE 231 (323)
T ss_dssp GGGHHHHHHHHHHGGGGTC------------------CCCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHH
T ss_pred hhhHHHHHHHHHHHHhcCC------------------CCceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHH
Confidence 9999999999999999883 45766665 499999 56 799999 4 589999999999
Q ss_pred HHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc--------------------CCCCHHHHHHHHhc--CChhhHHH
Q 014464 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQN--MNWGTFKP 366 (424)
Q Consensus 309 I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~--------------------s~~~~eel~~~y~~--l~~~dlK~ 366 (424)
|++||++|+||+. .++.|+++.|++++ +++++++++++|.+ ++|++||+
T Consensus 232 i~~Ki~~a~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~ 302 (323)
T 2cyb_A 232 VERKIRKAYCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKI 302 (323)
T ss_dssp HHHHHHTSCCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhcCCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999863 44668999999887 34589999999983 89999999
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 014464 367 LLTDALIEHLHPIQVRYEE 385 (424)
Q Consensus 367 ~Lae~I~~~L~pirer~~~ 385 (424)
.||++|+++|+|||++|++
T Consensus 303 ~la~~i~~~l~pir~~~~~ 321 (323)
T 2cyb_A 303 AVAKYLNMLLEDARKRLGV 321 (323)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999975
No 23
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.2e-63 Score=514.03 Aligned_cols=280 Identities=21% Similarity=0.286 Sum_probs=242.8
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--CceEEEEEeccceecCC--CCHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai-~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~~~~ 147 (424)
+++++|+||+|| |.+|||||++++ .+| | |+ ++.++|+|+|+|+++.+ .+++++++++++++++|
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--l--------Q~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~ 159 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--L--------QDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDI 159 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--H--------HHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--H--------HHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHH
Confidence 478999999999 889999999887 455 4 66 57889999999999864 59999999999999999
Q ss_pred HHcCccCCceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhh------
Q 014464 148 LACGIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDIL------ 218 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v~~---~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl------ 218 (424)
+|+||||+|++||+||+|++ +.++.|.|++.++++++.+...|+ +++++|+|+||+||||||+
T Consensus 160 lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~ 231 (451)
T 3foc_A 160 IACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDG 231 (451)
T ss_dssp HTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTT
T ss_pred HHcCCCCCceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCC
Confidence 99999999999999999965 677778888888888887765542 5689999999999999998
Q ss_pred ------------------------------------ccccc-----------------eEecccchHHHHHHHHHHHHHH
Q 014464 219 ------------------------------------LYQSD-----------------FVPVGEDQKQHLELTRELAERV 245 (424)
Q Consensus 219 ------------------------------------~~~ad-----------------~vpvG~DQ~~hieLaRdia~r~ 245 (424)
+|++| +||||.||+||+|||||||++|
T Consensus 232 ~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rf 311 (451)
T 3foc_A 232 LPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRM 311 (451)
T ss_dssp SGGGCCBCC-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTT
T ss_pred CCccccccccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHh
Confidence 33344 9999999999999999999998
Q ss_pred hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHHHHHHHhhh-ccCCCCCCc
Q 014464 246 NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGL 324 (424)
Q Consensus 246 n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i 324 (424)
| +++|..+.. ++||||+++++|||||+++ |+|+|+|+|++|++|||+ |+||+..++
T Consensus 312 n------------------~~~p~~~~~---~~l~gLdG~~~KMSKS~~n--s~I~l~D~p~~I~kKI~k~A~Td~~~~~ 368 (451)
T 3foc_A 312 G------------------HPKNAYLLG---KFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKINRYAFSGGRDTE 368 (451)
T ss_dssp T------------------SCCCEEEEE---CCCCBTTBTTCCCCTTCGG--GSCBTTCCHHHHHHHHHHHSCCCSCSSH
T ss_pred C------------------CCCCeeecC---CcccCCCCCCCccCCCCCC--CeeeecCCHHHHHHHHhhhccCCCCccc
Confidence 8 467776654 5999996555799999974 799999999999999999 999998776
Q ss_pred cc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014464 325 EF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 396 (424)
Q Consensus 325 ~~--~~~~rpe~~nll~i~~~~s--~~~~eel~~~y~--~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~I 396 (424)
++ .++++|++|+++.||.+|+ ++++++++++|+ +++|++||+.|++.|+++|+|||+||+++++ +.|++.
T Consensus 369 ~~~~~~~g~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~--d~v~~f 444 (451)
T 3foc_A 369 EEHRAFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDT--TMIESF 444 (451)
T ss_dssp HHHHTTCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCH--HHHHHH
T ss_pred hhcccCCCCcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHh
Confidence 64 5689999999999999994 558899999997 5899999999999999999999999999875 345544
No 24
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=3.1e-61 Score=480.22 Aligned_cols=257 Identities=25% Similarity=0.314 Sum_probs=227.4
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcC
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACG 151 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~~~~lA~G 151 (424)
+++++|+||+|||.+|||| ++++++|+.+ |+ |++++|+|||+||++++. +++++++++.+++++|+|+|
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~l--------Q~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G 97 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDL--------QNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMG 97 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHH--------HHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHH--------HHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 3689999999999999999 8999999999 76 799999999999999864 89999999999999999999
Q ss_pred ccCCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccceEec
Q 014464 152 IDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 227 (424)
Q Consensus 152 lDp~k~~if~QS~v~~~~el~wi----L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~vpv 227 (424)
+| +.|++||+|+++ +++|. ++|.+++++|.|+.+|+++. . +..++|+|+||+||||||++|++|+|||
T Consensus 98 ~d---~~~~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~ 169 (314)
T 2zp1_A 98 LK---AKYVYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVG 169 (314)
T ss_dssp CC---CEEEEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CC---eEEEECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEc
Confidence 98 789999999866 45555 99999999999999998642 2 2349999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCCCHH
Q 014464 228 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 307 (424)
Q Consensus 228 G~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D~~e 307 (424)
|.||++|++|+|++++ ++|..+.. ++|||| +|++||||| + +|+|+|+|+|+
T Consensus 170 G~DQ~~~~~l~R~i~~----------------------~~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~ 220 (314)
T 2zp1_A 170 GMEQRKIHMLARELLP----------------------KKVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPE 220 (314)
T ss_dssp EGGGHHHHHHHHHHSS----------------------SCCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHH
T ss_pred ChhHHHHHHHHHHhcC----------------------CCcEEeec---cccccC-CcccccCCC-C--cceecCCCCHH
Confidence 9999999999999854 23555443 599999 477899999 4 58999999999
Q ss_pred HHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc-----------------CCCCHHHHHHHHh--cCChhhHHHHH
Q 014464 308 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLL 368 (424)
Q Consensus 308 ~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~-----------------s~~~~eel~~~y~--~l~~~dlK~~L 368 (424)
+|++|||+|+||+. .++.|+++.||+++ ++++++||+++|+ +++|+++|+.|
T Consensus 221 ~i~~KI~~a~td~~---------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~l 291 (314)
T 2zp1_A 221 EIRAKIKKAYCPAG---------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAV 291 (314)
T ss_dssp HHHHHHHHSCCCTT---------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCC---------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999999874 44678999999987 3459999999997 47999999999
Q ss_pred HHHHHHhhhHHHHHHHH
Q 014464 369 TDALIEHLHPIQVRYEE 385 (424)
Q Consensus 369 ae~I~~~L~pirer~~~ 385 (424)
|+.|+++|+|+|++|+.
T Consensus 292 a~~i~~~l~p~r~~~~~ 308 (314)
T 2zp1_A 292 AEELIKILEPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999984
No 25
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-61 Score=490.05 Aligned_cols=279 Identities=23% Similarity=0.227 Sum_probs=228.2
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~-~~~~i~~~~----~~~~~~~ 147 (424)
++++||+||+|||.+|||||+++|++|..+ |.+++++|+|+||||+|+ +. ..+.++.++ ..+.+.|
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~--------q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l 109 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFL--------KAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAIL 109 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHH--------HTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHH--------HcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999987 889999999999999997 33 455566554 3455578
Q ss_pred HHcCccCCceEEEEcCCc---chhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccce
Q 014464 148 LACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 224 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v---~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~ 224 (424)
+|||+||+++.||+||+| +++.++.|.++|.++++++.|+.+.+ .+ . .+++++|+|+||+||||||++|++|+
T Consensus 110 ~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~ 185 (394)
T 2dlc_X 110 RSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDC 185 (394)
T ss_dssp HHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSE
T ss_pred HHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCE
Confidence 999999999999999998 56788999999999999999886532 11 1 25689999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014464 225 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 304 (424)
Q Consensus 225 vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 304 (424)
||||.||++|++++|+++++|| ++.|..++.+ +||+| +|.+|||||++ +++|+|+|
T Consensus 186 v~~G~DQ~~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~--ns~I~L~D 241 (394)
T 2dlc_X 186 QFGGVDQRKIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDP--NSKIDLLE 241 (394)
T ss_dssp EEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C------------CCSCBTTC
T ss_pred EecCccHHHHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCC--CCEEeccC
Confidence 9999999999999999999987 4568877754 99999 53379999997 36799999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHH----------------------------hcCCCCHHHHHHHH
Q 014464 305 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ----------------------------LISGKTKGEVAEEC 356 (424)
Q Consensus 305 ~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~----------------------------~~s~~~~eel~~~y 356 (424)
+|++|++|||+|+||+. +++.++++.|++ .++++++++|+++|
T Consensus 242 ~p~~i~kKI~ka~Td~~---------~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~ 312 (394)
T 2dlc_X 242 EPKQVKKKINSAFCSPG---------NVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAF 312 (394)
T ss_dssp CHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCCC---------CCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHH
Confidence 99999999999999874 334456666643 34567999999999
Q ss_pred hc--CChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHH
Q 014464 357 QN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 401 (424)
Q Consensus 357 ~~--l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~~IL~~Ga 401 (424)
.+ ++|++||+.||++|+++|+|+|++|+ ++++ +++++..|.
T Consensus 313 ~~g~~~~~~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~~ 355 (394)
T 2dlc_X 313 KEEKLSPPDLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKGY 355 (394)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhccC
Confidence 84 89999999999999999999999987 4444 777777553
No 26
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=1.3e-61 Score=500.49 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=240.7
Q ss_pred CCceEEEecCCC-CcchhhhhHHHHHHHHHhcccccccccc--CceEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLA 149 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~lA 149 (424)
+++++|+||+|| |.+|||||++++. + +|+|+ |+.++|+|||+||++++ .+++++++++++++++|+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~----~-----~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA 177 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIF----T-----KWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIA 177 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHH----H-----HHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHH----H-----HHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999 8999999998662 2 23375 78999999999999975 6899999999999999999
Q ss_pred cCccCCceEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhc-----
Q 014464 150 CGIDNSKASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL----- 219 (424)
Q Consensus 150 ~GlDp~k~~if~QS~v~~----~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~----- 219 (424)
+|+||+|++||.||+|++ +.++.| +++||+++++++++.+ .+++++|+|+||+||||||++
T Consensus 178 ~GlDp~kt~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~ 248 (437)
T 1r6u_A 178 CGFDINKTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQ 248 (437)
T ss_dssp TTCCGGGEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHH
T ss_pred hCCCccceEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcch
Confidence 999999999999999985 444443 5779999998887765 467899999999999999999
Q ss_pred ------cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 220 ------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 220 ------~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
|++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.
T Consensus 249 ~~g~~~~~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~ 307 (437)
T 1r6u_A 249 IFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASD 307 (437)
T ss_dssp HHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTS
T ss_pred hcccccCCceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCC
Confidence 789999999999999999999999987 467887654 59999954347999999
Q ss_pred CCCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CChhhHHH
Q 014464 294 PSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKP 366 (424)
Q Consensus 294 p~~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~~~--~~rpe~~nll~i~~~~s--~~~~eel~~~y~~--l~~~dlK~ 366 (424)
+ +++|+|+|+|++|++||++ |+||+..++.+++ +++|++++++.|+.+|+ ++++++|+++|.+ ++++++|+
T Consensus 308 ~--nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~ 385 (437)
T 1r6u_A 308 P--NSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKK 385 (437)
T ss_dssp S--SSCCBTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHH
T ss_pred C--CCeeeccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHH
Confidence 7 3699999999999999999 9999976555433 37899999999999885 4577889999973 89999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHhcChHHHHHHH
Q 014464 367 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVL 397 (424)
Q Consensus 367 ~Lae~I~~~L~pirer~~~~~~~~~~l~~IL 397 (424)
.||+.|+++|+|+|+||+++.++ .|++.+
T Consensus 386 ~LAe~i~~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 386 ALIEVLQPLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHhc
Confidence 99999999999999999998743 355443
No 27
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=6.4e-61 Score=500.95 Aligned_cols=279 Identities=19% Similarity=0.281 Sum_probs=239.3
Q ss_pred CCceEEEecCCC-CcchhhhhHHHH-HHHHHhcccccccccc--CceEEEEEeccceecCC-CCHHHHHHHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYL 148 (424)
Q Consensus 74 ~~~~i~sGi~PT-G~lHLGnylgai-~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~~~~l 148 (424)
+++++|+||+|| |.||||||+|++ .+| | |+ |+.++|+|||+||++++ .+++++++++++++++|+
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--l--------Q~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~l 223 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--L--------QDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDII 223 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--H--------HHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--H--------HHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHH
Confidence 478999999999 899999999977 344 4 64 79999999999999974 689999999999999999
Q ss_pred HcCccCCceEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHhHhhC-CCCccccchhhhHHHHhhhhc----
Q 014464 149 ACGIDNSKASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL---- 219 (424)
Q Consensus 149 A~GlDp~k~~if~QS~v~~----~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g-~~~~~~g~l~YPvLQAADIl~---- 219 (424)
|+|+||+|++||.||+|++ +.++.| +|+||++++++.++.+ .+++++|+|+||+||||||++
T Consensus 224 A~GlDp~k~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d 294 (477)
T 1r6t_A 224 ACGFDINKTFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFP 294 (477)
T ss_dssp TTCCCTTSEEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCH
T ss_pred HhCCCCCceEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccc
Confidence 9999999999999999985 444444 6678888888776654 467899999999999999999
Q ss_pred -------cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014464 220 -------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 292 (424)
Q Consensus 220 -------~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS 292 (424)
|++|+||||.||++|++++||+|+||| |++|..++. ++||||+++++|||||
T Consensus 295 ~~~g~~~~~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS 353 (477)
T 1r6t_A 295 QIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSAS 353 (477)
T ss_dssp HHHTTCCCCEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTT
T ss_pred hhhccccCCceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCC
Confidence 688999999999999999999999987 467887654 5999995434799999
Q ss_pred CCCCCceeecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CChhhHH
Q 014464 293 APSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFK 365 (424)
Q Consensus 293 ~p~~~s~I~L~D~~e~I~kKI~k-A~Td~~~~i~~~~--~~rpe~~nll~i~~~~s--~~~~eel~~~y~~--l~~~dlK 365 (424)
.++ ++|+|+|+|++|++||++ |+||+..+..+++ +++|++++++.|+.+|+ ++++++|+++|.+ ++++++|
T Consensus 354 ~~n--saI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K 431 (477)
T 1r6t_A 354 DPN--SSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELK 431 (477)
T ss_dssp STT--CCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCC--CceeecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHH
Confidence 974 699999999999999999 9999975544433 38899999999999885 4578889999973 8999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014464 366 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 396 (424)
Q Consensus 366 ~~Lae~I~~~L~pirer~~~~~~~~~~l~~I 396 (424)
+.||+.|+++|+|||+||+++.++ .|++.
T Consensus 432 ~~Lae~i~~~l~pirer~~~~~~~--~v~~~ 460 (477)
T 1r6t_A 432 KALIEVLQPLIAEHQARRKEVTDE--IVKEF 460 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 999999999999999999998753 35444
No 28
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=4.4e-60 Score=481.80 Aligned_cols=265 Identities=23% Similarity=0.228 Sum_probs=221.2
Q ss_pred CCceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecC-CCCHHHHHHHHH---H--HHHHH
Q 014464 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIY 147 (424)
Q Consensus 74 ~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~---~--~~~~~ 147 (424)
++++||+||+|||.+|||||+|+|+.|..+ |.+++++|+||||||+|+ +.++.++.++.. + +.+.|
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~--------q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~l 105 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFL--------KAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAML 105 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHH--------HTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHH--------HCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999988877 889999999999999997 567666644442 2 33457
Q ss_pred HHcCccCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhccccce
Q 014464 148 LACGIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF 224 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~v~---~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~~~ad~ 224 (424)
+|||+||+++.||+||+|+ ++.++.|.++|.++++++.|+.+. ..+. .+++++|+|+||+||||||++|++|+
T Consensus 106 la~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~---v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~ 181 (372)
T 1n3l_A 106 ESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE---VVKQ-VEHPLLSGLLYPGLQALDEEYLKVDA 181 (372)
T ss_dssp HHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT---TSCC-CSSCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred HHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh---hhcc-cCCCcceeeecchHhhccHHHhcCCE
Confidence 9999999999999999996 788899999999999999886331 1111 25689999999999999999999999
Q ss_pred EecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC
Q 014464 225 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 304 (424)
Q Consensus 225 vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D 304 (424)
||||.||++|++++||++++|+ |.+|..++.+ +||+| +| +|||||+++ ++|+|+|
T Consensus 182 v~~G~DQ~~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-dG-~KMSKS~~n--s~I~L~d 236 (372)
T 1n3l_A 182 QFGGIDQRKIFTFAEKYLPALG------------------YSKRVHLMNP---MVPGL-TG-SKMSSSEEE--SKIDLLD 236 (372)
T ss_dssp EEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCS-SC-C-------C--CSCBTTC
T ss_pred EEcChhHHHHHHHHHHHHHHcC------------------CCCCEEEecC---ccCCC-Cc-ccccCCCCC--CeEeccC
Confidence 9999999999999999999975 4568877754 99999 56 699999974 6999999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHh--------c------------CCCCHHHHHHHHhc--CChh
Q 014464 305 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWG 362 (424)
Q Consensus 305 ~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~--------~------------s~~~~eel~~~y~~--l~~~ 362 (424)
+|++|++|||+|+||+. +++.++++.|+++ | +++++++|+++|.+ ++|+
T Consensus 237 ~p~~i~kKi~~A~td~~---------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~ 307 (372)
T 1n3l_A 237 RKEDVKKKLKKAFCEPG---------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPG 307 (372)
T ss_dssp CHHHHHHHHHTCCCCTT---------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHH
T ss_pred CHHHHHHHHHHccCCCC---------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999874 2455688888775 3 45699999999984 8999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHH
Q 014464 363 TFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 363 dlK~~Lae~I~~~L~pirer~~ 384 (424)
++|+.||+.|+++|+|+|++|+
T Consensus 308 ~~K~~La~~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 308 DLKNSVEVALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHhc
Confidence 9999999999999999999997
No 29
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=3.2e-60 Score=490.29 Aligned_cols=286 Identities=19% Similarity=0.227 Sum_probs=240.9
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C---------CCHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~ 141 (424)
.++++|+||+|||. +|||||+ ++++|+.+ |+ |++++|+||||||+++ + .+++++++|+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v-~l~~l~~l--------Q~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~ 106 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAV-VLRKMRQF--------QELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAK 106 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECCCC---------------------HHHHH
T ss_pred CCcEEEEcccCCCCCCchhhHH-HHHHHHHH--------HHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHH
Confidence 47899999999995 9999999 78899999 77 7999999999999997 3 23677887776
Q ss_pred HHHHHHHHcCcc--CCceEEEEcCCcchhhHHHHHH--hccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhh
Q 014464 142 ETAAIYLACGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 217 (424)
Q Consensus 142 ~~~~~~lA~GlD--p~k~~if~QS~v~~~~el~wiL--~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADI 217 (424)
.+.+.+. +|+| |+|++||+||+|.++..+.|++ ++.++++++.+..+||++... ++++++|+|+||+||||||
T Consensus 107 ~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDi 183 (432)
T 1h3f_A 107 TYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDS 183 (432)
T ss_dssp HHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHH
T ss_pred HHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhh
Confidence 6665543 8999 9999999999998887777776 899999999988899976543 3678999999999999999
Q ss_pred hccccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 218 LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 218 l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
++|++|+||||.||++|++++||+|+|||. ..|..+.. ++||++ ||++|||||.+
T Consensus 184 l~l~~~l~~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~--- 238 (432)
T 1h3f_A 184 VAIRADVEMGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD--- 238 (432)
T ss_dssp HHHTCSEEEEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT---
T ss_pred hhcCccEEEechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC---
Confidence 999999999999999999999999999872 22333332 599998 78779999985
Q ss_pred ceeecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCChhhHHHHHHHHHHHhhh
Q 014464 298 SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH 377 (424)
Q Consensus 298 s~I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~~l~~~dlK~~Lae~I~~~L~ 377 (424)
|+|+|+|+|++|++||+++.+ ++++.||++|++.+.+|+++.+.+ +|+++|+.||+.|+++++
T Consensus 239 n~I~L~dsp~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~ 301 (432)
T 1h3f_A 239 NYIGLTEPPEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYA 301 (432)
T ss_dssp CCCBTTSCHHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred CeeCCCCCHHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHh
Confidence 699999999999999999865 478999999999999999999888 999999999999999999
Q ss_pred ----HHHHHHHHHhcChHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014464 378 ----PIQVRYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 415 (424)
Q Consensus 378 ----pirer~~~~~~~~~~l~~IL~~----Ga~kAr~iA~~Tl~~V 415 (424)
|||+||+++.+ ++||++||++ |++.|++ |+++-+.+
T Consensus 302 ~~~~pirerr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 302 LPQIPPRIDRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SSSCCSCCSHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred cccchHHHHHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 99999999999 9999999999 9888764 55555544
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=4.1e-59 Score=466.40 Aligned_cols=261 Identities=14% Similarity=0.154 Sum_probs=226.6
Q ss_pred CceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHH--
Q 014464 75 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT-- 140 (424)
Q Consensus 75 ~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~-- 140 (424)
+++||+||+|||. +|||||+ ++++|+.+ |+ |++++|+||||||+|+ +. +++++++++
T Consensus 33 ~~~vy~G~~PTg~slHlGh~l-~l~~~~~l--------Q~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~ 103 (322)
T 2yxn_A 33 PIALVCGFDPTADSLHLGHLV-PLLCLKRF--------QQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDK 103 (322)
T ss_dssp CCEEEEEECCSSSSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHH
T ss_pred CCEEEEeecCCCCcccHHHHH-HHHHHHHH--------HHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHH
Confidence 6899999999999 9999999 68899998 77 7999999999999997 43 899999999
Q ss_pred -HHHHHHHHHcCccCCceEEEEcCCcch-hhHHHHH--HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhh
Q 014464 141 -RETAAIYLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 216 (424)
Q Consensus 141 -~~~~~~~lA~GlDp~k~~if~QS~v~~-~~el~wi--L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAAD 216 (424)
+++++.|+|||+||+|++||.||+|+. +.++.|+ ++|.++++++.|+.++|++.... .+++++|+|+||+|||||
T Consensus 104 ~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaD 182 (322)
T 2yxn_A 104 IRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYD 182 (322)
T ss_dssp HHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHH
Confidence 888899999999999999999999976 4888888 89999999999999999764321 256899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014464 217 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 292 (424)
Q Consensus 217 Il~~----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS 292 (424)
|++| ++|+++||.||+||++++||||+|||+ + .|..+.. ++|||+ || +|||||
T Consensus 183 il~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~gl-dG-~KMSKS 239 (322)
T 2yxn_A 183 FACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQ--N----------------QVFGLTV---PLITKA-DG-TKFGKT 239 (322)
T ss_dssp HHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHC--C----------------CCEEEEC---CCCBCT-TS-CBTTEE
T ss_pred HHHHhccCCceEEecCchhHHHHHHHHHHHHHhCC--C----------------Cceeecc---CccCCC-Cc-ccccCC
Confidence 9999 999999999999999999999999994 2 2334433 489999 67 699999
Q ss_pred CCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHHH
Q 014464 293 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLL 368 (424)
Q Consensus 293 ~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~L 368 (424)
++ |+|+|+| +|+++++||+++. .+++.+++.+|.+++++++++++++|. +.+++++|+.|
T Consensus 240 ~~---n~I~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~L 303 (322)
T 2yxn_A 240 EG---GAVWLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVL 303 (322)
T ss_dssp TT---EECBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHH
T ss_pred CC---CeeeccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 86 6999999 9999999999972 124556666665556778999999997 46999999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 014464 369 TDALIEHLHPIQVRYE 384 (424)
Q Consensus 369 ae~I~~~L~pirer~~ 384 (424)
|+.|+++|+|.++..+
T Consensus 304 a~~i~~~l~~~~~~~~ 319 (322)
T 2yxn_A 304 AEQVTRLVHGEEGLQA 319 (322)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHH
Confidence 9999999999998765
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=4.9e-56 Score=449.42 Aligned_cols=260 Identities=17% Similarity=0.139 Sum_probs=210.6
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~ 141 (424)
++++||+||+|||. +||||+ +++++|+.+ |+ |++++|+|||+||+|+ +. ++++++++++
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl-~~l~~~~~l--------Q~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~ 115 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHL-LALLGLFHL--------QRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANAR 115 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHH-HHHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHH-HHHHHHHHH--------HHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHH
Confidence 46899999999997 999995 688899999 77 7999999999999997 32 6999999999
Q ss_pred HHHHHHHHcCccCCc-----------eEEEEcCCcchhhHHHHHHhc---cccHHHHhhhhhHHHHhHhhCCCCccccch
Q 014464 142 ETAAIYLACGIDNSK-----------ASVFVQSHVRAHVELMWLLSS---ATPIGWLNKMIQFKEKSHKAGGENVGVALL 207 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k-----------~~if~QS~v~~~~el~wiL~~---~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l 207 (424)
+++++|+|+ +||++ +.||+||+|..+.++.|++.+ .+++++|.++.+||++... ++++++|+|
T Consensus 116 ~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f 192 (356)
T 2pid_A 116 ALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEF 192 (356)
T ss_dssp HHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHH
T ss_pred HHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHH
Confidence 999999999 99855 899999999887777777654 7889999999998865432 257899999
Q ss_pred hhhHHHHhhhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCC
Q 014464 208 TYPVLMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 283 (424)
Q Consensus 208 ~YPvLQAADIl~~----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~ 283 (424)
+||+||||||++| ++|+||||.||+||++++||||+|||+ + .|..+.. ++||++
T Consensus 193 ~YPvLQAaDil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l- 250 (356)
T 2pid_A 193 FYQVLQAYDFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST- 250 (356)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC---
T ss_pred HHHHHHHHHHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-
Confidence 9999999999999 999999999999999999999999994 2 2333332 488998
Q ss_pred CCCCccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cC
Q 014464 284 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NM 359 (424)
Q Consensus 284 dg~~KMSKS~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l 359 (424)
|| +|||||. +|+|+|+| +|++|++||+++. | +++.+++.+|.+++++++++|+++|. +.
T Consensus 251 dG-~KMSKS~---~naI~L~d~~tsp~~i~~ki~~~~-D------------~~v~~~l~~~t~~~~~~i~~l~~~~~~g~ 313 (356)
T 2pid_A 251 TG-AKLGKSA---GNAVWLNRDKTSPFELYQFFVRQP-D------------DSVERYLKLFTFLPLPEIDHIMQLHVKEP 313 (356)
T ss_dssp ---------------CCBSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCG
T ss_pred Cc-ccccCCC---CCeeeccCCCCCHHHHHHHHHcCC-c------------hhHHHHHHHHHcCCchHHHHHHHHHhcCC
Confidence 77 6999996 57999999 9999999999963 2 34667777777777788999999997 46
Q ss_pred ChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 360 NWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 360 ~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
+++++|+.||+.|+++++..++..+
T Consensus 314 ~~~~~K~~La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 314 ERRGPQKRLAAEVTKLVHGREGLDS 338 (356)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 8999999999999999999876544
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.5e-55 Score=454.82 Aligned_cols=261 Identities=14% Similarity=0.136 Sum_probs=225.3
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C--------CCHHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRE 142 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~--------~~~~~i~~~~~~ 142 (424)
.++++|+||+|||. +||||+ +++++|+.+ |+ |++++++|||+||+++ | .+++++++|+++
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhl-v~l~~l~~l--------Q~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~ 101 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHL-VPLLTLRRF--------QRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTER 101 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGH-HHHHHHHHH--------HHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHH-HHHHHHHHH--------HHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHH
Confidence 36899999999996 999995 588899998 77 7999999999999997 5 678999999976
Q ss_pred H---HHHHHHcCccCCceEEEEcCCcchh-hHHHHH--HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhh
Q 014464 143 T---AAIYLACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 216 (424)
Q Consensus 143 ~---~~~~lA~GlDp~k~~if~QS~v~~~-~el~wi--L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAAD 216 (424)
+ ++.|+|+|+||+|++||+||+|+++ .++.|+ +++.+++++|.|+.+||++. . .+++++|+|+||+|||||
T Consensus 102 ~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaD 178 (432)
T 2jan_A 102 IRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQAND 178 (432)
T ss_dssp HHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHH
Confidence 5 7788999999999999999999874 688898 99999999999999999765 1 357899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccC
Q 014464 217 ILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 292 (424)
Q Consensus 217 Il~~----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS 292 (424)
|++| ++|+||||.||++|++++||||+|||+ ..|..+.. ++||++ || +|||||
T Consensus 179 il~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS 235 (432)
T 2jan_A 179 YVELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKS 235 (432)
T ss_dssp HHHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBC
T ss_pred HHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCC
Confidence 9999 999999999999999999999999983 12333333 489998 77 699999
Q ss_pred CCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHHH
Q 014464 293 APSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLL 368 (424)
Q Consensus 293 ~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~L 368 (424)
.++ ++|+|+| +|+++++||+++. | +++.+++.+|.+++.+++++++++|. +.+++++|+.|
T Consensus 236 ~~n--saI~L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~L 300 (432)
T 2jan_A 236 TGG--GSLWLDPQMTSPYAWYQYFVNTA-D------------ADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRL 300 (432)
T ss_dssp SSS--CBCBSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCC--CeEEccCCCCCHHHHHHHHhcCC-c------------hhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHH
Confidence 863 5999999 9999999999953 2 34566777766667778899999997 56899999999
Q ss_pred HHHHHHhhhHHHHHHH
Q 014464 369 TDALIEHLHPIQVRYE 384 (424)
Q Consensus 369 ae~I~~~L~pirer~~ 384 (424)
|+.|+++++...+..+
T Consensus 301 A~~v~~~~hg~~~~~~ 316 (432)
T 2jan_A 301 ASELTVLVHGEAATAA 316 (432)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHH
Confidence 9999999999876544
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=7e-54 Score=438.32 Aligned_cols=274 Identities=18% Similarity=0.151 Sum_probs=225.4
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-C---------CCHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~ 141 (424)
.++++|+||+|||. +|||||+ ++++|+.| |+ |++++++|||+||+|+ + .+++.+++|+.
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv-~l~~l~~l--------Q~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~ 133 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLL-PLMPLFWM--------YLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMT 133 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHH-HHHHHHHH--------HHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHH-HHHHHHHH--------HHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHH
Confidence 36799999999999 9999999 67889998 77 7999999999999997 3 27788999999
Q ss_pred HHHHHHHHcC-----------cc---CCceEEEEcCCc-chhhHHHHH--HhccccHHHHhhhhhHHHHhHhhCCCCccc
Q 014464 142 ETAAIYLACG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGV 204 (424)
Q Consensus 142 ~~~~~~lA~G-----------lD---p~k~~if~QS~v-~~~~el~wi--L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~ 204 (424)
++.+.++|+| +| |+++.||.||+| +++.++.|+ +++.++++++.+..+||++... .+++++
T Consensus 134 ~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~ 211 (392)
T 1y42_X 134 KIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSF 211 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCH
T ss_pred HHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCccc
Confidence 9988888865 45 789999999997 778889999 8899999988777788754321 357899
Q ss_pred cchhhhHHHHhhhhcc----ccceEecccchHHHHHHHHHHHHHHhhhhCCc-----cccccCCCCCccccCCceecCCC
Q 014464 205 ALLTYPVLMASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGR-----KWKKLGGRGGAIFKVPEPLIPPA 275 (424)
Q Consensus 205 g~l~YPvLQAADIl~~----~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~-----~~~~~~~~~~~~f~~P~~l~~~~ 275 (424)
|+|+||+||||||+++ ++|+||||.||+||++++||||+|||+.|+.. ..++++ +..|..+..
T Consensus 212 gef~YPlLQAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~-- 283 (392)
T 1y42_X 212 AEFTYPIMQGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV-- 283 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc--
Confidence 9999999999999977 69999999999999999999999999877310 011122 234544433
Q ss_pred CcccccCCCCCCccccCCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHH
Q 014464 276 GARVMSLTDGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEV 352 (424)
Q Consensus 276 ~~~l~~L~dg~~KMSKS~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel 352 (424)
++||++ || +|||||. +|+|+|+| +|+++++||+++. | +++.+++.+|.+++++++++|
T Consensus 284 -pll~~l-dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~~ft~l~~~ei~~l 344 (392)
T 1y42_X 284 -PLLTDS-SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-D------------QEVENLLKLFTFMPISEITKT 344 (392)
T ss_dssp -CCCBCT-TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-T------------TTHHHHHHHHCCCCHHHHHHH
T ss_pred -ccCcCC-ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-c------------hhHHHHHHHHHhCChhHHHHH
Confidence 599999 77 6999997 47999999 9999999999962 2 356777777777777889999
Q ss_pred HHHHh-cCChhhHHHHHHHHHHHhhhHHHHHHHH
Q 014464 353 AEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEE 385 (424)
Q Consensus 353 ~~~y~-~l~~~dlK~~Lae~I~~~L~pirer~~~ 385 (424)
+++|. +.+++++|+.||+.|++++++.++..+.
T Consensus 345 ~~~~~~g~~~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 345 MEEHIKDPSKRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp HHHHHHCGGGCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 99997 4589999999999999999999876543
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=5.1e-54 Score=442.30 Aligned_cols=264 Identities=15% Similarity=0.159 Sum_probs=216.0
Q ss_pred CCceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHHH
Q 014464 74 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATR 141 (424)
Q Consensus 74 ~~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~ 141 (424)
+++++|+||+|||. +|||||+ ++++|+.+ |+ |++++++|||+||+++ |. +++++++|+.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v-~l~~l~~l--------Q~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~ 99 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLA-TILTMRRF--------QQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSA 99 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHH-HHHHHHHH--------HHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHH
Confidence 36899999999999 9999999 67889998 77 7999999999999997 43 8999999997
Q ss_pred HH---HHHHHHcCccCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhh
Q 014464 142 ET---AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDIL 218 (424)
Q Consensus 142 ~~---~~~~lA~GlDp~k~~if~QS~v~~~~el~wiL~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl 218 (424)
.+ ++.|+++|+||+|++||.||+|+.+..+.|.|.++.+...++||.++..++++. ++++++|+|+||+||||||+
T Consensus 100 ~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~-~~~is~~ef~YPlLQaaDil 178 (419)
T 2ts1_A 100 RIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRI-ETGISFTEFSYMMLQAYDFL 178 (419)
T ss_dssp HHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTT-TTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhcc-CCCcchHHHHHHHHHHHHHH
Confidence 66 667789999999999999999988766666665544444444554444443444 36789999999999999999
Q ss_pred cc----ccceEecccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 219 LY----QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 219 ~~----~ad~vpvG~DQ~~hieLaRdia~r~-n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
+| ++|+||||.||++|++++||+|+|| |. + .|..+.. ++||++ || +|||||.
T Consensus 179 ~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~--~----------------~~~~lt~---pll~~l-dG-~KMSKS~ 235 (419)
T 2ts1_A 179 RLYETEGCRLQIGGSDQWGNITAGLELIRKTKGE--A----------------RAFGLTI---PLVTKA-DG-TKFGKTE 235 (419)
T ss_dssp HHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS
T ss_pred HHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------Ceeeccc---ccccCC-Cc-ccccCCC
Confidence 99 9999999999999999999999999 73 1 2333332 488998 77 6999997
Q ss_pred CCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHHHH
Q 014464 294 PSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLT 369 (424)
Q Consensus 294 p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~La 369 (424)
+|+|+|+| +|+++++||+++. | +++.+++.+|.+++.+++++++++|. +.+++++|+.||
T Consensus 236 ---~naI~L~d~~tsp~~i~qki~~~~-D------------~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA 299 (419)
T 2ts1_A 236 ---SGTIWLDKEKTSPYEFYQFWINTD-D------------RDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLA 299 (419)
T ss_dssp ---SCCCBSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ---CCeEecCCCCCCHHHHHHHHhcCC-c------------hhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 47999999 9999999999952 2 24556666666666678899999997 569999999999
Q ss_pred HHHHHhhhHHHHHHHHH
Q 014464 370 DALIEHLHPIQVRYEEI 386 (424)
Q Consensus 370 e~I~~~L~pirer~~~~ 386 (424)
+.|+++++...+..+..
T Consensus 300 ~~v~~~~hg~~~~~~a~ 316 (419)
T 2ts1_A 300 EEVTKLVHGEEALRQAI 316 (419)
T ss_dssp HHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHH
Confidence 99999999987665443
No 35
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3.3e-53 Score=436.97 Aligned_cols=257 Identities=14% Similarity=0.149 Sum_probs=223.3
Q ss_pred CceEEEecCCCCc-chhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecC-CC---------CHHHHHHHHHH
Q 014464 75 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRE 142 (424)
Q Consensus 75 ~~~i~sGi~PTG~-lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~ 142 (424)
++++|+||+|||. +|||||+ ++++|+.+ |+ |++++++|||+||+++ |. +++++++|+.+
T Consensus 32 ~~~iy~G~dPTg~sLHlGh~v-~l~~~~~l--------Q~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~ 102 (420)
T 1jil_A 32 QVTLYCGADPTADSLHIGHLL-PFLTLRRF--------QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEG 102 (420)
T ss_dssp CCEEEEEECCSSSSCBHHHHH-HHHHHHHH--------HHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCccHHHHH-HHHHHHHH--------HHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHH
Confidence 6899999999999 9999999 68889998 77 7999999999999997 43 89999999999
Q ss_pred HHHHHHHcCccC---CceEEEEcCCcc-hhhHHHHHH--hccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhh
Q 014464 143 TAAIYLACGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASD 216 (424)
Q Consensus 143 ~~~~~lA~GlDp---~k~~if~QS~v~-~~~el~wiL--~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAAD 216 (424)
+.+.++++ ||| +|++||.||+|+ ++.++.|+. ++.+++++|.++.+||++. ++++++|+|+||+|||||
T Consensus 103 ~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~----~~~is~~ef~YplLQaaD 177 (420)
T 1jil_A 103 ISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL----EHGISYTEFTYTILQAID 177 (420)
T ss_dssp HHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH----TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc----cCCcchHHHHHHHHHHHH
Confidence 99999998 888 999999999997 679999986 8999999999999998654 267899999999999999
Q ss_pred hhcc----ccceEecccchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014464 217 ILLY----QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 291 (424)
Q Consensus 217 Il~~----~ad~vpvG~DQ~~hieLaRdia~r~-n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 291 (424)
|++| ++|+||||.||++|++++||+|+|| |. + .|..+.. ++||++ || +||||
T Consensus 178 ~l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~--~----------------~~~~l~~---pll~~l-dG-~KMSK 234 (420)
T 1jil_A 178 FGHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQ--T----------------DAYGLTI---PLVTKS-DG-KKFGK 234 (420)
T ss_dssp HHHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCC--C----------------CCEEEEE---CCCBCT-TS-CBTTB
T ss_pred HHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCC--C----------------CeeEeec---ccccCC-cc-ccccC
Confidence 9999 9999999999999999999999999 73 1 2333333 489998 77 69999
Q ss_pred CCCCCCceeecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCChhhHHHH
Q 014464 292 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 367 (424)
Q Consensus 292 S~p~~~s~I~L~D---~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~s~~~~eel~~~y~-~l~~~dlK~~ 367 (424)
|. +|+|+|+| +|+++++||+++. | +++.+++.+|.+++.+++++++++|. +.+++++|+.
T Consensus 235 S~---~naI~L~d~~tsp~~i~~ki~~~~-D------------~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~ 298 (420)
T 1jil_A 235 SE---SGAVWLDAEKTSPYEFYQFWINQS-D------------EDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKT 298 (420)
T ss_dssp CS---SSBCBSSTTTSCHHHHHHHHHTCC-H------------HHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeEecCCCCCCHHHHHHHHhcCC-c------------hhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHH
Confidence 98 47999999 9999999999953 1 24556666666666678889999997 4589999999
Q ss_pred HHHHHHHhhhHHHHHHH
Q 014464 368 LTDALIEHLHPIQVRYE 384 (424)
Q Consensus 368 Lae~I~~~L~pirer~~ 384 (424)
||+.|+++++..++..+
T Consensus 299 La~~v~~~~hg~~~~~~ 315 (420)
T 1jil_A 299 LAEEVTKFIHGEDALND 315 (420)
T ss_dssp HHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 99999999999876554
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.8e-48 Score=420.78 Aligned_cols=262 Identities=14% Similarity=0.158 Sum_probs=216.3
Q ss_pred CCCCCCceEEEecCCCCcchhhhhHHHHHHHHHhcccccccccc--CceEEEEEeccceecCC---CCHHHHHHHHHHHH
Q 014464 70 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN--SYETLFFIVDLHAITLP---YDTQQLSKATRETA 144 (424)
Q Consensus 70 ~~~~~~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~--~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~ 144 (424)
+++..+..|+|+- |||++||||+++.++.+.++ +|. |++++|+||||||++++ .+++++++++.|++
T Consensus 377 ~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~-------~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~ 448 (690)
T 3p0j_A 377 AAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDF-------IAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNC 448 (690)
T ss_dssp CCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHH-------HHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHH
T ss_pred CCCCCcceEEecC-CCCCcccchHHHHHHHHHHH-------HHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHH
Confidence 3444567888888 99999999999877645544 255 89999999999999983 58999999999999
Q ss_pred HHHHHcCccCCceEEEEcCCcchh-hHHHHH----HhccccHHHHhhhhhHHHHhHhhCCCCccccchhhhHHHHhhhhc
Q 014464 145 AIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL 219 (424)
Q Consensus 145 ~~~lA~GlDp~k~~if~QS~v~~~-~el~wi----L~~~~~v~~l~R~~~~k~~~~~~g~~~~~~g~l~YPvLQAADIl~ 219 (424)
++|+|+|+|| +++|++||+|... .+++|. ++..++++|+.+.. +++++++|+|+||+||||||+.
T Consensus 449 ~~~~alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~ 518 (690)
T 3p0j_A 449 ALLKAYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALM 518 (690)
T ss_dssp HHHHHHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhc
Confidence 9999999998 8999999998653 356775 56777777776542 3477899999999999999999
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCce
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~ 299 (424)
+++|++|||.||++|++||||+|++++ .|..++. .++|+|.++.++||||++ +|+
T Consensus 519 l~aDi~~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~--~~~ 573 (690)
T 3p0j_A 519 LSVSHVISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA--DDV 573 (690)
T ss_dssp TTCSEEEECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------CCS
T ss_pred cCCCEEecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--CCe
Confidence 999999999999999999999998743 2444433 489999767666667765 699
Q ss_pred eecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc-------------------CCCCHHHHHHHHh--c
Q 014464 300 INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------------SGKTKGEVAEECQ--N 358 (424)
Q Consensus 300 I~L~D~~e~I~kKI~kA~Td~~~~i~~~~~~rpe~~nll~i~~~~-------------------s~~~~eel~~~y~--~ 358 (424)
|+|+|+|++|++||++|||++ + .+.|++++|++++ +++++++|+++|. .
T Consensus 574 I~l~D~~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~ 643 (690)
T 3p0j_A 574 LYLDDNDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGA 643 (690)
T ss_dssp CBTTCCHHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSS
T ss_pred eeccCCHHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCC
Confidence 999999999999999999954 2 5678999999876 1469999999997 5
Q ss_pred CChhhHHHHHHHHHHHhhhHHHHHHH
Q 014464 359 MNWGTFKPLLTDALIEHLHPIQVRYE 384 (424)
Q Consensus 359 l~~~dlK~~Lae~I~~~L~pirer~~ 384 (424)
+||+|||++|+++|+++|+|+|++|+
T Consensus 644 lhp~dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 644 LHPADLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.08 E-value=9.1e-11 Score=115.79 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=104.3
Q ss_pred cCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEEE
Q 014464 82 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 161 (424)
Q Consensus 82 i~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~ 161 (424)
-.|||.+||||+.+++.+|...+ +.+...++-|.|.. +.....+....+..++.++|++++.. +++
T Consensus 12 PsPtG~LHiG~~rtal~n~l~Ar-------~~~g~~ilRieDtD------~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~ 77 (298)
T 1nzj_A 12 PSPSGELHFGSLIAALGSYLQAR-------ARQGRWLVRIEDID------PPREVPGAAETILRQLEHYGLHWDGD-VLW 77 (298)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHH-------HTTCEEEEEECCSC------GGGSCTTHHHHHHHHHHHTTCCCSSC-CEE
T ss_pred cCCCCCccHHHHHHHHHHHHHHH-------hcCCeEEEEEecCC------chhhHHHHHHHHHHHHHHcCCCCCCC-Cee
Confidence 35679999999999999999871 33566666788742 12344567778889999999999874 799
Q ss_pred cCCcchh-hH-------HHHHHhccccHHHHhhhhh-HHHHhHh---hC---------------CCCccccchhhhH-HH
Q 014464 162 QSHVRAH-VE-------LMWLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LM 213 (424)
Q Consensus 162 QS~v~~~-~e-------l~wiL~~~~~v~~l~R~~~-~k~~~~~---~g---------------~~~~~~g~l~YPv-LQ 213 (424)
||+..+. .+ .-+.+.|.++-.+++++.. |....+. .| .+..-.|.+.++. .+
T Consensus 78 qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~ 157 (298)
T 1nzj_A 78 QSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLA 157 (298)
T ss_dssp GGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHH
T ss_pred eeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccC
Confidence 9996432 11 1122568999888876411 0000000 00 0011124445554 46
Q ss_pred HhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCC
Q 014464 214 ASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 274 (424)
Q Consensus 214 AADIl~~~ad~vpv-------------------G~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~ 274 (424)
..|.+++++|-.|. |.|+..+...-..+.+.++ ++.|...+.
T Consensus 158 ~~D~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~- 218 (298)
T 1nzj_A 158 REDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL- 218 (298)
T ss_dssp HSCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE-
T ss_pred CCCEEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe-
Confidence 66777777666665 9999887766666656544 455766554
Q ss_pred CCcccccCCCCCCccccCCC
Q 014464 275 AGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 275 ~~~~l~~L~dg~~KMSKS~p 294 (424)
++|.+. +| +||||++.
T Consensus 219 --pll~~~-~g-~KLSKR~g 234 (298)
T 1nzj_A 219 --PLALNP-QG-AKLSKQNH 234 (298)
T ss_dssp --CBCCC-------------
T ss_pred --eeeECC-CC-CcccccCC
Confidence 477787 56 69999974
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.00 E-value=2.9e-10 Score=119.37 Aligned_cols=198 Identities=18% Similarity=0.171 Sum_probs=128.4
Q ss_pred cCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCce---
Q 014464 82 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA--- 157 (424)
Q Consensus 82 i~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~--- 157 (424)
=.|||.+||||+..++.+|... +. +...++=|-|. ++ .....+....+..++..+||+++..
T Consensus 13 PsPTG~LHiG~~rtAL~n~l~A--------r~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~ 78 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALFNWAYA--------RHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEV 78 (498)
T ss_dssp CCSSSSCBHHHHHHHHHHHHHH--------HHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred cCCCCCccHHHHHHHHHHHHHH--------HHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCc
Confidence 3577999999999999999987 44 44444338776 21 2334567778888899999999974
Q ss_pred ----EEEEcCCcchhhHH--------HHHHhccccHHHHhhhh---------hHHHH---------hH--hhCCC-----
Q 014464 158 ----SVFVQSHVRAHVEL--------MWLLSSATPIGWLNKMI---------QFKEK---------SH--KAGGE----- 200 (424)
Q Consensus 158 ----~if~QS~v~~~~el--------~wiL~~~~~v~~l~R~~---------~~k~~---------~~--~~g~~----- 200 (424)
.+|+||+..+.... -..+.|+++-.+|.++. .|... .+ ..|..
T Consensus 79 gG~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~ 158 (498)
T 2ja2_A 79 GGPYGPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRL 158 (498)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCCeeeecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEE
Confidence 58999997554211 12256999998886542 11110 00 01100
Q ss_pred -----Ccc-----ccchhhhHHHHhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhCC
Q 014464 201 -----NVG-----VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGG 251 (424)
Q Consensus 201 -----~~~-----~g~l~YPvLQAADIl~~~ad~vpv-------------------G~DQ~~hieLaRdia~r~n~~~g~ 251 (424)
.+. .|.+.++.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +|
T Consensus 159 k~~~~~~~~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g- 236 (498)
T 2ja2_A 159 RMPDDDLAWNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG- 236 (498)
T ss_dssp CCCSSCEEEEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT-
T ss_pred ECCCCceEEEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc-
Confidence 000 244666666667777766555555 99999999999999999876 53
Q ss_pred ccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014464 252 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 315 (424)
Q Consensus 252 ~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 315 (424)
+| ++.|+..+.+ +|.+. +| +||||++. .+.|.+ .|+.|..-+..
T Consensus 237 -----~g------~~~P~~~h~p---lil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 237 -----VA------ERIPKFAHLP---TVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp -----SC------CCCCEEEEEC---CEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred -----CC------CCCCeEEEee---eeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHH
Confidence 11 5667766543 77776 56 69999974 233332 46666666554
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.91 E-value=8.1e-10 Score=115.25 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=126.5
Q ss_pred CCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceE----
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 158 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~---- 158 (424)
.|||.+||||+..++.+|...+ +.+...++=|-|. ++ .....+....+..++..+|++++...
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar-------~~~G~filRieDt----D~--~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG 75 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWAR-------RNGGRFIVRIEDT----DR--ARYVPGAEERILAALKWLGLSYDEGPDVGG 75 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHH-------HTTCEEEECBCCC----CT--TSCCTTHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred CCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEeCcC----CC--cccChHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence 5789999999999999999871 3456666667776 21 12334566788888999999999753
Q ss_pred ---EEEcCCcchh-hHHH-------HHHhccccHHHHhhhh-------------hHHHHhHh--hCC-----------CC
Q 014464 159 ---VFVQSHVRAH-VELM-------WLLSSATPIGWLNKMI-------------QFKEKSHK--AGG-----------EN 201 (424)
Q Consensus 159 ---if~QS~v~~~-~el~-------wiL~~~~~v~~l~R~~-------------~~k~~~~~--~g~-----------~~ 201 (424)
.|+||+..+. .+.. ..+.|.++-.++.++. +..+..+. .|. +.
T Consensus 76 ~~gp~~QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~ 155 (468)
T 1j09_A 76 PHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGT 155 (468)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred CCCCeeccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCc
Confidence 5999996542 1111 1245899888886532 11111110 110 01
Q ss_pred cc-----ccchhhhHHHHhhhhccccceEec-------------------ccchHHHHHHHHHHHHHHhhhhCCcccccc
Q 014464 202 VG-----VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKL 257 (424)
Q Consensus 202 ~~-----~g~l~YPvLQAADIl~~~ad~vpv-------------------G~DQ~~hieLaRdia~r~n~~~g~~~~~~~ 257 (424)
+. -|.+.+|..+.-|.+++++|..|. |.|+..|...-.-+.+.++
T Consensus 156 ~~~~D~~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg----------- 224 (468)
T 1j09_A 156 TEVKDELRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG----------- 224 (468)
T ss_dssp EEEEETTTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT-----------
T ss_pred eEEEeccceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC-----------
Confidence 11 255777777778888887666666 9999999998888888765
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014464 258 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 315 (424)
Q Consensus 258 ~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 315 (424)
++.|+..+. ++|.+. +| +||||++.+ . .|.+ .|+.|..-+..
T Consensus 225 -------~~~p~~~h~---~li~~~-~g-~klSKR~g~--~--~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 -------WEAPRFYHM---PLLRNP-DK-TKISKRKSH--T--SLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp -------CCCCEEEEE---CCCBCT-TS-CBCCTTTSC--C--BHHHHHHTTCCHHHHHHHHHH
T ss_pred -------CCCCeEEEe---eeeeCC-CC-Cccccccch--h--hHHHHHHCCCCHHHHHHHHHH
Confidence 445765443 367776 56 699999853 1 2322 57777766654
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.83 E-value=7.3e-10 Score=116.08 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=125.3
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
.++=-.=.|||.+||||+..++.+|...+ +.+.++++-|-|. ++ .....+....+..++..+|++++
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar-------~~~G~filRieDt----D~--~R~~~~~~~~I~~dL~wlGl~wD 92 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFAR-------KEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWD 92 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHH-------HHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHTTCCCS
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHH-------HcCCEEEEEEeeC----Cc--ccccHHHHHHHHHHHHHcCCCCC
Confidence 34444556789999999999999999871 3466777778776 21 23345666788888999999999
Q ss_pred ceE-------EEEcCCcchh-hHHH-------HHHhccccHHHHhhh--hhHHHH--hHhhCC----------CCc----
Q 014464 156 KAS-------VFVQSHVRAH-VELM-------WLLSSATPIGWLNKM--IQFKEK--SHKAGG----------ENV---- 202 (424)
Q Consensus 156 k~~-------if~QS~v~~~-~el~-------wiL~~~~~v~~l~R~--~~~k~~--~~~~g~----------~~~---- 202 (424)
... .|+||+..+. .+.. ..+.|.+|-.+|.++ +.|... ....|. ..+
T Consensus 93 e~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D 172 (488)
T 3afh_A 93 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFED 172 (488)
T ss_dssp BBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEE
T ss_pred cCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEe
Confidence 753 6999996542 1111 114488777766652 111100 000110 000
Q ss_pred -cccchhhhHHHHhhhhcc-------------------ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 014464 203 -GVALLTYPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 262 (424)
Q Consensus 203 -~~g~l~YPvLQAADIl~~-------------------~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~ 262 (424)
-.|.+.++.-+.-|.+++ +.|+|.-|.|+..+...-..+.+.|+
T Consensus 173 ~v~G~~~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG---------------- 236 (488)
T 3afh_A 173 LLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG---------------- 236 (488)
T ss_dssp TTTEEEEEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----------------
T ss_pred ccceeEeecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC----------------
Confidence 023344444344444444 45666669999999988888888765
Q ss_pred ccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhhc
Q 014464 263 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 316 (424)
Q Consensus 263 ~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~kA 316 (424)
++.|+..+.+ +|.+. +| +||||++.+ +.|.+ .|+.|..-+...
T Consensus 237 --~~~P~f~H~p---li~~~-~g-~KLSKR~g~----~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 237 --WEAPVFMHIP---LILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp --CCCCEEEEEC---CEECT-TS-SBCCTTTSC----CBHHHHHHHTCCHHHHHHHHHHT
T ss_pred --CCCCeEEEEe---eeeCC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 4567766543 77886 66 699999842 33432 577777766653
No 41
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.70 E-value=1.1e-09 Score=117.23 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=121.6
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
.++=-.=.|||.+||||+.+++.+|...+ +.+.++++-|.|. ++. ....+....+..++..+|++++
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar-------~~~G~~ilRieDt----D~~--r~~~~~~~~I~~dL~wlGl~~D 196 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFAR-------KEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWD 196 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHH-------HHTCEEEECBCCC----CSS--SCCHHHHHHHHHHHHHTTCCCS
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHH-------hcCCcEEEEecCc----Chh--hccHHHHHHHHHHHHHcCCCCC
Confidence 44444577889999999999999998871 3466777778883 321 3344566678888999999999
Q ss_pred ceE-------EEEcCCcchh-hHH-------HHHHhccccHHHHhhh--hhHHHH--hHhhC---------C-CCc----
Q 014464 156 KAS-------VFVQSHVRAH-VEL-------MWLLSSATPIGWLNKM--IQFKEK--SHKAG---------G-ENV---- 202 (424)
Q Consensus 156 k~~-------if~QS~v~~~-~el-------~wiL~~~~~v~~l~R~--~~~k~~--~~~~g---------~-~~~---- 202 (424)
... .|+||+..+. .+. -..+.|+++-.+|.++ +.|... ....| . ..+
T Consensus 197 ~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D 276 (592)
T 3al0_C 197 EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFED 276 (592)
T ss_dssp BBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECC
T ss_pred CCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeee
Confidence 753 7899996542 111 1124577776666542 001100 00001 0 000
Q ss_pred -cccchhhhHHHHhhhhcc-------------------ccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCC
Q 014464 203 -GVALLTYPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 262 (424)
Q Consensus 203 -~~g~l~YPvLQAADIl~~-------------------~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~ 262 (424)
-.|.+.+|.-+.-|.+++ +.|+|.-|.|+..+...-+.+.+.|+
T Consensus 277 ~v~G~~~~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg---------------- 340 (592)
T 3al0_C 277 LLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG---------------- 340 (592)
T ss_dssp TTTCSEECCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT----------------
T ss_pred cccceeeeccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC----------------
Confidence 123333333333444443 45666669999999988888776643
Q ss_pred ccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC---C---CHHHHHHHhhh
Q 014464 263 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL---D---PKDVIANKIKR 315 (424)
Q Consensus 263 ~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~---D---~~e~I~kKI~k 315 (424)
++.|+..+. ++|.+. +| +||||++.+ +.|. + .|+.|..-+..
T Consensus 341 --~~~P~~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 341 --WEAPVFMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp --CCCCBCCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred --CCCCeEEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 455654443 477786 66 699999843 3333 2 57777777665
No 42
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.58 E-value=3.6e-07 Score=95.82 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=120.0
Q ss_pred ecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEEE
Q 014464 81 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 160 (424)
Q Consensus 81 Gi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if 160 (424)
.=.|||.+||||+..++-+|.... +.+.+.++=|-|.- + .....+.+..+..++..+||+++. ..|
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar-------~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~ 72 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYAR-------HRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPY 72 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHH-------HTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CCCCCCCccHHHHHHHHHHHHHHH-------hcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCc
Confidence 345789999999999999998871 34667777787762 1 223356777888899999999987 479
Q ss_pred EcCCcch-hhHHHH-------HHhccccHHHHhhhh----------hHHH---------HhH--hhCCC-----Ccc---
Q 014464 161 VQSHVRA-HVELMW-------LLSSATPIGWLNKMI----------QFKE---------KSH--KAGGE-----NVG--- 203 (424)
Q Consensus 161 ~QS~v~~-~~el~w-------iL~~~~~v~~l~R~~----------~~k~---------~~~--~~g~~-----~~~--- 203 (424)
+||+..+ +.+..- .+.|+++-.+|..+. .|.. ... ..|.. .++
T Consensus 73 ~QS~r~~~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~ 152 (492)
T 2cfo_A 73 FQSDRLDLYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDR 152 (492)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTC
T ss_pred cccCCHHHHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCC
Confidence 9999543 222111 134888877775431 0110 000 01100 000
Q ss_pred --------ccchhhhHHHH-hhhhc------------------------cccceEecccchHHHHHHHHHHHHHHhhhhC
Q 014464 204 --------VALLTYPVLMA-SDILL------------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYG 250 (424)
Q Consensus 204 --------~g~l~YPvLQA-ADIl~------------------------~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g 250 (424)
-|.+.++.-.. .|.++ .+.|+|..|.|+..+-..-..|.+.|+
T Consensus 153 ~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg---- 228 (492)
T 2cfo_A 153 QIEWQDLVRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG---- 228 (492)
T ss_dssp EEEEEETTTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT----
T ss_pred ceEEEecceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC----
Confidence 13333333333 44444 445577799999998888777777654
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014464 251 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 315 (424)
Q Consensus 251 ~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 315 (424)
++.|...+. ++|.+. +| +|||||+.+ +.|.+ .|+.|..-+..
T Consensus 229 --------------~~~P~~~H~---plil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 --------------ATPPNFAHT---PLILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp --------------CCCCEEEEE---CCEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred --------------CCCceEEEe---eeEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 456765554 377786 66 699999853 22321 57777776665
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.13 E-value=2.5e-05 Score=81.73 Aligned_cols=200 Identities=16% Similarity=0.140 Sum_probs=114.1
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
.+....=.|||.+||||..+++-+|... + +.+...++=|-|.- ......+....+..++..+|++++
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~A-----r--~~~G~~iLRieDtD------~~r~~~~~~~~I~~~l~wlGl~~d 80 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFA-----R--KEKGKFILRIEDTD------LERSEREYEEKLMESLRWLGLLWD 80 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHH-----H--HHTCEEEECBCCSS------CCSGGGHHHHHHHHHHHHHTCCCS
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHH-----H--HcCCeEEEEEecCC------ccccHHHHHHHHHHHHHHcCCCCC
Confidence 4667788899999999999999999876 1 23444444454432 123334566677888889999988
Q ss_pred ce-------EEEEcCCcc----hhhHHHH----HHhccccHHHHhhhhh----------HH----H-------HhH--hh
Q 014464 156 KA-------SVFVQSHVR----AHVELMW----LLSSATPIGWLNKMIQ----------FK----E-------KSH--KA 197 (424)
Q Consensus 156 k~-------~if~QS~v~----~~~el~w----iL~~~~~v~~l~R~~~----------~k----~-------~~~--~~ 197 (424)
.. -.|+||+-. +..+... .+.|.++-.++..+.. |. + ..+ ..
T Consensus 81 e~p~~gg~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~ 160 (481)
T 2o5r_A 81 EGPDVGGDHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEK 160 (481)
T ss_dssp BBTTTBCTTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHT
T ss_pred CCcccCCCCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhc
Confidence 63 257899832 2221111 1235554433322110 00 0 000 00
Q ss_pred CC-------------------------CCccccch------hhhHHHHhhhh---ccccceEecccchHHHHHHHHHHHH
Q 014464 198 GG-------------------------ENVGVALL------TYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAE 243 (424)
Q Consensus 198 g~-------------------------~~~~~g~l------~YPvLQAADIl---~~~ad~vpvG~DQ~~hieLaRdia~ 243 (424)
|. ++..+|-+ .||..+-|+++ ..+.|+|..|.||..|...-.-+.+
T Consensus 161 G~~~~iR~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~ 240 (481)
T 2o5r_A 161 GLRPAVFFKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYE 240 (481)
T ss_dssp TCCCEEEECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHH
T ss_pred CCcceEEEEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHH
Confidence 10 00011111 14444444443 3578999999999999988777777
Q ss_pred HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC------CHHHHHHHhhh
Q 014464 244 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 315 (424)
Q Consensus 244 r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D------~~e~I~kKI~k 315 (424)
.++ ++.|...+.+ ++.+. +| +||||++.+ ..|.| .|+.|..-+..
T Consensus 241 aLG------------------~~~p~~~H~p---lil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 241 AFE------------------KAPPVFAHVS---TILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp HTT------------------CCCCEEEEEC---CEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHT
T ss_pred HcC------------------CCCCeEEEEe---eEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 654 4567655433 56665 66 699999853 23322 46666665544
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.94 E-value=7.1e-05 Score=78.33 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=59.5
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccC
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDN 154 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp 154 (424)
++++=-.=.|||.+||||+..++-+|+.. + +.+.+.++=|-|. ++ .....++...+..++..+|+++
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~A-----r--~~~G~filRieDt----D~--~R~~~~~~~~i~~dl~wlGl~~ 91 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFA-----R--KMKGTFVLRIEDT----DV--ERSSQEAVDAILEGMAWLGLDY 91 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHH-----H--HTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCC
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHH-----H--hcCCeEEEEeCCC----Cc--ccccHHHHHHHHHHHHHcCCCC
Confidence 34444455677999999999999999887 1 3344555445552 21 2234567778888999999999
Q ss_pred CceEEEEcCCcch-hhHHH-------HHHhccccHHHHhhh
Q 014464 155 SKASVFVQSHVRA-HVELM-------WLLSSATPIGWLNKM 187 (424)
Q Consensus 155 ~k~~if~QS~v~~-~~el~-------wiL~~~~~v~~l~R~ 187 (424)
+. ..|.||+..+ +.+.. +.+.|+++-.++..+
T Consensus 92 d~-~~~~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~ 131 (490)
T 4g6z_A 92 DE-GPYYQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDAL 131 (490)
T ss_dssp SE-EEEEGGGCHHHHHHHHHHHHHTTSEEEECC--------
T ss_pred CC-CCcccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHH
Confidence 87 4789999432 22211 224588887777543
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.44 E-value=0.00083 Score=71.15 Aligned_cols=177 Identities=21% Similarity=0.198 Sum_probs=92.3
Q ss_pred EEEecC--CCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 78 IVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 78 i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
+.+=|. |||.+||||...++-+|... + +.+..+++=|-|. ++ .....+....+..++..+|++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~A-----r--~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd 163 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYA-----R--KYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD 163 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHH-----H--HTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHH-----H--HcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC
Confidence 445554 56999999999999888776 1 2345555556664 21 12233566678888899999997
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHhhhh-----------hHHHHhH-----hhCC------------
Q 014464 156 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------QFKEKSH-----KAGG------------ 199 (424)
Q Consensus 156 k~~if~QS~v~~-~~el~wi-------L~~~~~v~~l~R~~-----------~~k~~~~-----~~g~------------ 199 (424)
.+++||+..+ +.+..-. +.|.++-.++.... +..+... ..|.
T Consensus 164 --~~~~qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~ 241 (553)
T 3aii_A 164 --ETVIQSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDL 241 (553)
T ss_dssp --EEEEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCT
T ss_pred --CCcccccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEccc
Confidence 5899999543 2222111 34777666554210 0000000 0010
Q ss_pred --CCccc----------------cc--hhhhHHH---HhhhhccccceEecccchHHHHHHHHHHHHHHhhhhCCccccc
Q 014464 200 --ENVGV----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 256 (424)
Q Consensus 200 --~~~~~----------------g~--l~YPvLQ---AADIl~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~ 256 (424)
.+.++ |- ..||..+ +.|.-+.+.|+|..|.|...+-..-.-+...+ |
T Consensus 242 ~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~al----G------ 311 (553)
T 3aii_A 242 NHPNPAIRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHL----G------ 311 (553)
T ss_dssp TCSSGGGTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHH----T------
T ss_pred ccCCCCCCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHc----C------
Confidence 00011 11 1355544 44556678999999999987665544444443 3
Q ss_pred cCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014464 257 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293 (424)
Q Consensus 257 ~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~ 293 (424)
++.|...+. ++| .+ +| .|||||.
T Consensus 312 --------~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --------WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp --------CCCCEEECC---CCB-C---------CHH
T ss_pred --------CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 456776654 366 44 56 6999996
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.11 E-value=0.0018 Score=68.15 Aligned_cols=177 Identities=20% Similarity=0.174 Sum_probs=101.6
Q ss_pred cCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCce----
Q 014464 82 VQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA---- 157 (424)
Q Consensus 82 i~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~---- 157 (424)
=.|||.+||||...|+-+|... + +.+.++++=|=|. ++. ....+....+..++.-+||+++.-
T Consensus 31 PsPtG~LHiG~artAl~n~~~A-----r--~~~G~fiLRieDt----D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~ 97 (512)
T 4gri_A 31 PSPTGLQHIGGIRTALFNYFFA-----K--SCGGKFLLRIEDT----DQS--RYSPEAENDLYSSLKWLGISFDEGPVVG 97 (512)
T ss_dssp CCSSSCCBHHHHHHHHHHHHHH-----H--HTTCEEEECBCCC----CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTB
T ss_pred cCCCCcccHHHHHHHHHHHHHH-----H--HcCCEEEEEeCcC----CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccC
Confidence 3466999999999999999876 1 4455554446553 221 112244455666777889998753
Q ss_pred ---EEEEcCCcchh----hHHHH----HHhccccHHHHhhhhhHH-------------------HHhHh--hCC------
Q 014464 158 ---SVFVQSHVRAH----VELMW----LLSSATPIGWLNKMIQFK-------------------EKSHK--AGG------ 199 (424)
Q Consensus 158 ---~if~QS~v~~~----~el~w----iL~~~~~v~~l~R~~~~k-------------------~~~~~--~g~------ 199 (424)
..|+||+-.+. .+..+ .+.|.++-.++.+..... +.... .+.
T Consensus 98 g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~ 177 (512)
T 4gri_A 98 GDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRF 177 (512)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEE
T ss_pred CCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeee
Confidence 25799985332 22111 145888877775432211 00000 000
Q ss_pred -----CCcc-----ccchh-----------------hhHHHHhhh---hccccceEecccchHHHHHHHHHHHHHHhhhh
Q 014464 200 -----ENVG-----VALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249 (424)
Q Consensus 200 -----~~~~-----~g~l~-----------------YPvLQAADI---l~~~ad~vpvG~DQ~~hieLaRdia~r~n~~~ 249 (424)
.++. .|.+. ||..+=|-. .+.+.++|.-|.|...+-..-.-|.+-|+
T Consensus 178 k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg--- 254 (512)
T 4gri_A 178 KIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK--- 254 (512)
T ss_dssp CCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT---
T ss_pred cccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC---
Confidence 0000 12211 222222211 12468899999999887766666666544
Q ss_pred CCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014464 250 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 250 g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
++.|...+.+ .|.+- +| +|+||.+.
T Consensus 255 ---------------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 ---------------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp ---------------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred ---------------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 6778776654 77775 66 79999974
No 47
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.11 E-value=0.0028 Score=65.87 Aligned_cols=82 Identities=13% Similarity=0.171 Sum_probs=49.7
Q ss_pred ceEEEecC--CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCHH-HHHHHHHHH
Q 014464 76 KRIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQ-QLSKATRET 143 (424)
Q Consensus 76 ~~i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~-~i~~~~~~~ 143 (424)
..+++|-- |||.+||||....+-.-+-. +++ ..|++|.+. -.|-|..-. ..++. -..++...+
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~-----R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 80 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIA-----RYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERF 80 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHH-----HHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHH-----HHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45555554 66999999987765443322 333 247887544 334443321 11343 344566678
Q ss_pred HHHHHHcCccCCceEEEEcCC
Q 014464 144 AAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 144 ~~~~lA~GlDp~k~~if~QS~ 164 (424)
..++.++|++++ .++..++
T Consensus 81 ~~~~~~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 81 KKLWEFLKIEYT--KFIRTTD 99 (497)
T ss_dssp HHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHhCCcCC--CCccCCC
Confidence 888999999988 4666776
No 48
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.00 E-value=0.0015 Score=67.81 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=48.5
Q ss_pred ceEEEecCC--CCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEE-eccceecC-------CCCHHH-HHHHHHHH
Q 014464 76 KRIVSGVQP--TGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFI-VDLHAITL-------PYDTQQ-LSKATRET 143 (424)
Q Consensus 76 ~~i~sGi~P--TG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~I-aDlhA~t~-------~~~~~~-i~~~~~~~ 143 (424)
..+++|--| +|.+||||....+..-+-. +++ ..|++|.+.. .|-|..-. ..++.+ ..++...+
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~-----R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 78 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLA-----RWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRF 78 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHH-----HHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHH-----HHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455666655 7999999987765432222 333 2478876542 24332211 113433 33455577
Q ss_pred HHHHHHcCccCCceEEEEcCC
Q 014464 144 AAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 144 ~~~~lA~GlDp~k~~if~QS~ 164 (424)
..++.++|++++ .++..++
T Consensus 79 ~~~~~~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 79 KRAWDLLGIAYD--DFIRTTE 97 (500)
T ss_dssp HHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHhCCcCC--CCcccCC
Confidence 788889999888 4566666
No 49
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=96.91 E-value=0.0056 Score=64.36 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=47.1
Q ss_pred ceEEEecC--CCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEE-EEeccceecC-------CCCHHH-HHHHHHHH
Q 014464 76 KRIVSGVQ--PTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRET 143 (424)
Q Consensus 76 ~~i~sGi~--PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~~~~-i~~~~~~~ 143 (424)
..+++|-= |||.+||||..+++..-+- .+++ ..|++|.+ .-.|.|..-. ..++++ ..+....+
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~l-----aR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~ 100 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAM-----ARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAF 100 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHH-----HHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHH-----HHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44555554 4599999998776543211 1222 24788754 4455554321 124433 34455567
Q ss_pred HHHHHHcCccCCceEEEEcCC
Q 014464 144 AAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 144 ~~~~lA~GlDp~k~~if~QS~ 164 (424)
..++.++|++++ .++.-++
T Consensus 101 ~~~l~~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 101 RRMAEVLNSSND--DYIRTSE 119 (536)
T ss_dssp HHHHHHTTCCCS--EEEETTS
T ss_pred HHHHHHcCCCCC--cceeCCC
Confidence 778889999988 3444443
No 50
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.12 E-value=0.0026 Score=67.92 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=27.9
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEE--Eecc
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL 124 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~--IaDl 124 (424)
..-|+|--|+|.+||||.-+++--=. + -+++. .|++|+.. |.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~-l----aR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDA-I----ARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHH-H----HHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHH-H----HHHHHHcCCceEEEeccCCc
Confidence 34478999999999999876553110 1 12222 47888653 7777
No 51
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=94.38 E-value=0.089 Score=54.61 Aligned_cols=75 Identities=13% Similarity=0.022 Sum_probs=43.2
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEE-Eecccee--cC-----CCCHHH-HHHHHHHHHHH
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF-IVDLHAI--TL-----PYDTQQ-LSKATRETAAI 146 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~-IaDlhA~--t~-----~~~~~~-i~~~~~~~~~~ 146 (424)
..++|.-|.|.+||||....+-. ++ +.+|+. .|++|.+. -.|.|.- .. ..++.+ ..+++..+..+
T Consensus 28 ~YvcGPtvy~~~HIGHaR~~v~~--Dv---l~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 28 LYVCGMTVYDYMHIGHGRSWIIF--DM---VVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEECCCBTTSCCBHHHHHHHHHH--HH---HHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCCchhhhHHHHHH--HH---HHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33568888899999998654421 11 123333 37887554 2233321 00 113433 34556678888
Q ss_pred HHHcCccCCc
Q 014464 147 YLACGIDNSK 156 (424)
Q Consensus 147 ~lA~GlDp~k 156 (424)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 8899998754
No 52
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.30 E-value=0.067 Score=56.65 Aligned_cols=96 Identities=11% Similarity=-0.043 Sum_probs=61.9
Q ss_pred ceEEEecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCC
Q 014464 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNS 155 (424)
Q Consensus 76 ~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~ 155 (424)
++.=-+=.|||.+||||.-.++-+|... + +.+..+++=|-|. ++ .....+....+..++..+|++++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~A-----r--~~gG~fiLRieDT----D~--~R~~~e~~~~I~edL~wLGl~wd 93 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIA-----Q--DYKGQCNLRFDDT----NP--VKEDIEYVESIKNDVEWLGFHWS 93 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHH-----H--HTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCCS
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHH-----H--HcCCEEEEEECCC----Cc--hhcCHHHHHHHHHHHHHcCCCCC
Confidence 3444466678999999999999888876 1 3345555556654 11 23344666778888899999985
Q ss_pred ceEEEEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014464 156 KASVFVQSHVRA-HVELMWL-------LSSATPIGWLN 185 (424)
Q Consensus 156 k~~if~QS~v~~-~~el~wi-------L~~~~~v~~l~ 185 (424)
. ..++||+..+ +.+.+-. +.|.++-.++.
T Consensus 94 e-~~~~qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 94 G-NVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp S-SCEEGGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred C-CCeehcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 4 3689998643 3222222 34777766553
No 53
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=94.29 E-value=0.042 Score=57.66 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=53.0
Q ss_pred CceEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceE-EEEEeccceecC--CC------------C------
Q 014464 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYET-LFFIVDLHAITL--PY------------D------ 132 (424)
Q Consensus 75 ~~~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~-~i~IaDlhA~t~--~~------------~------ 132 (424)
..++-+|--|||.+||||.-.++.+++-. +|+. .|+++ +++-.|.|--.. |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~la-----R~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~ 95 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVG-----HALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPD 95 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHH-----HHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCC
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHH-----HHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCc
Confidence 35666799999999999998888775543 3433 36776 344455554111 00 0
Q ss_pred -----HHHHHHHHHHHHHHHHHcCccCCceEEEEcCC
Q 014464 133 -----TQQLSKATRETAAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 133 -----~~~i~~~~~~~~~~~lA~GlDp~k~~if~QS~ 164 (424)
.+-..++...+..++..+||+++ +|.||+
T Consensus 96 p~~~~~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 96 PWGCHESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp TTSSSSSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11224466677788889999886 358998
No 54
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=93.84 E-value=0.049 Score=58.58 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=27.5
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEE--Eecc
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL 124 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~--IaDl 124 (424)
.=|+|--|+|.+|+||.-+++---. + -+++. .|++|+.. |.||
T Consensus 123 ve~~spN~~~~~HiGH~Rs~iigD~-l----aR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 123 VEHTSVNPTKPLHMGHARNAILGDV-M----ARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp EECCCCCTTSCCBHHHHHHHHHHHH-H----HHHHHHTTCEEEEEEEECTT
T ss_pred EEeeCCCCCCCCccchhHHHHHHHH-H----HHHHHHcCCCceEEecccch
Confidence 3378999999999999866542110 1 11222 48887653 7787
No 55
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.74 E-value=0.1 Score=57.76 Aligned_cols=92 Identities=14% Similarity=0.054 Sum_probs=60.6
Q ss_pred EecCCCCcchhhhhHHHHHHHHHhccccccccccCceEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCccCCceEE
Q 014464 80 SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 159 (424)
Q Consensus 80 sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 159 (424)
-+=.|||.+||||...++-+|... + +.+..+++=|-|. ++. ....++...+..++..+||+++. .+
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~A-----r--~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~ 136 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTA-----R--QYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HF 136 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHH-----H--HTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CE
T ss_pred eCCCCCCCccHHHHHHHHHHHHHH-----H--HcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-Cc
Confidence 366777999999999999898876 1 2345555556664 221 33446677888888899999854 47
Q ss_pred EEcCCcch-hhHHHHH-------HhccccHHHHh
Q 014464 160 FVQSHVRA-HVELMWL-------LSSATPIGWLN 185 (424)
Q Consensus 160 f~QS~v~~-~~el~wi-------L~~~~~v~~l~ 185 (424)
++||+..+ +.+..-. +.|.++-.++.
T Consensus 137 ~~qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 137 YYASDYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp EEGGGGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred ccHhhhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 99999633 3222211 34777766554
No 56
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=89.97 E-value=0.8 Score=48.14 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=47.5
Q ss_pred CceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCHHH-HHHHHHHH
Q 014464 75 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRET 143 (424)
Q Consensus 75 ~~~i~sG-i~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~ 143 (424)
+..|.++ --|||.+||||....+..-+-. +++ ..|++|.+. -.|.|..-. ..++++ ..+.....
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~la-----R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~ 93 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWV-----RYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEH 93 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHH-----HHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHH-----HHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444444 4555999999988766432211 222 238887544 445554321 124433 34455677
Q ss_pred HHHHHHcCccCCceEEEEcC
Q 014464 144 AAIYLACGIDNSKASVFVQS 163 (424)
Q Consensus 144 ~~~~lA~GlDp~k~~if~QS 163 (424)
..++.++|++++. ++.-+
T Consensus 94 ~~~~~~lgi~~d~--~~~t~ 111 (560)
T 3h99_A 94 QTDFAGFNISYDN--YHSTH 111 (560)
T ss_dssp HHHHHHTTCCCSE--EEESS
T ss_pred HHHHHHcCCCCCC--ceeCC
Confidence 7888899999874 44444
No 57
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=88.58 E-value=1.1 Score=46.76 Aligned_cols=78 Identities=8% Similarity=0.014 Sum_probs=47.7
Q ss_pred CCceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEE-eccceecC-------CCCH-HHHHHHHHH
Q 014464 74 VKKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFI-VDLHAITL-------PYDT-QQLSKATRE 142 (424)
Q Consensus 74 ~~~~i~sG-i~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~ 142 (424)
+++.|-|. --|+|.+||||.++.+.. ++ +.+|+ ..|++|.+.- .|-|.+-. ..++ +-..+++..
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~--Di---i~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~ 83 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLIT--DV---IGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGE 83 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHH--HH---HHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHH--HH---HHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455554 357899999999875532 22 22332 3488886553 44454321 1244 344566677
Q ss_pred HHHHHHHcCccCCc
Q 014464 143 TAAIYLACGIDNSK 156 (424)
Q Consensus 143 ~~~~~lA~GlDp~k 156 (424)
+..++.++|++.+.
T Consensus 84 ~~~~~~~lgi~~D~ 97 (542)
T 3u1f_A 84 FKKCFEQMDYSIDY 97 (542)
T ss_dssp HHHHHHHHTCCCSE
T ss_pred HHHHHHHhCCccCc
Confidence 88888999998874
No 58
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.64 E-value=2.1 Score=45.11 Aligned_cols=95 Identities=9% Similarity=0.016 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEE-EEeccceecC-------CCC
Q 014464 63 EPTAPVASSSSVKKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLF-FIVDLHAITL-------PYD 132 (424)
Q Consensus 63 ~~~~~~~~~~~~~~~i~sG-i~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i-~IaDlhA~t~-------~~~ 132 (424)
++-++......++..|-+. .-|+|.+||||..+++..-+-. +++ ..|++|++ +-.|.|..-. ..+
T Consensus 15 ~~~~~~~~~~~~~~~i~~~~py~ng~lHiGH~r~~v~~D~la-----R~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~ 89 (564)
T 3kfl_A 15 QTQGPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLG-----RYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVS 89 (564)
T ss_dssp ---------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHH-----HHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCC
T ss_pred hhcCCccccCCCCEEEeCCCCCCCCCCCcchhHHHHHHHHHH-----HHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCC
Confidence 3333343333333333332 3578999999987765431111 222 23788744 4556665321 124
Q ss_pred HHH-HHHHHHHHHHHHHHcCccCCceEEEEcCC
Q 014464 133 TQQ-LSKATRETAAIYLACGIDNSKASVFVQSH 164 (424)
Q Consensus 133 ~~~-i~~~~~~~~~~~lA~GlDp~k~~if~QS~ 164 (424)
+++ ..+.......++..+|++.+. ++.-++
T Consensus 90 p~~~~~~~~~~~~~~~~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 90 PMDFTTSVSSEFKQCFQEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCSE--EEETTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc--cccCCC
Confidence 433 445556677788899999883 444443
No 59
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=83.84 E-value=0.25 Score=52.21 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=33.8
Q ss_pred cccceEecccchHHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014464 220 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 296 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieL---aRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~ 296 (424)
+.+|+..+|.||..++.+ ++-.+ .| ++.|..++.. ..| .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999884322 22222 23 3445544432 245 33 66 6999997
Q ss_pred CceeecC
Q 014464 297 QSRINLL 303 (424)
Q Consensus 297 ~s~I~L~ 303 (424)
+|.|.+.
T Consensus 345 GNvV~p~ 351 (564)
T 3kfl_A 345 GNAFDPV 351 (564)
T ss_dssp TCCCCHH
T ss_pred CCCCCHH
Confidence 5788653
No 60
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=82.68 E-value=0.41 Score=49.83 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCc
Q 014464 83 QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGI 152 (424)
Q Consensus 83 ~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~~~~~lA~Gl 152 (424)
-|+|.+||||....+-.=+ +-+++ ..|++|.+. -.|-|..-. ..++.+ .+++...+..++.++|+
T Consensus 22 ~~ng~lHiGHa~~~i~~D~-----l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi 96 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDA-----IARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI 96 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHH-----HHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccchhHHHHHHHH-----HHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999876543211 11332 247887553 334333211 123433 34455677788889999
Q ss_pred cCCceEEEEcCC
Q 014464 153 DNSKASVFVQSH 164 (424)
Q Consensus 153 Dp~k~~if~QS~ 164 (424)
+++ .++..++
T Consensus 97 ~~d--~~~~t~~ 106 (524)
T 2x1l_A 97 SFD--RFIRTSD 106 (524)
T ss_dssp CCS--EEEETTS
T ss_pred cCC--CCeecCC
Confidence 887 4555555
No 61
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=81.49 E-value=0.69 Score=50.89 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=34.5
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~-hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
+-+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999975 666543222211 221 1234444332 23332 55 7999997 57
Q ss_pred eeecC
Q 014464 299 RINLL 303 (424)
Q Consensus 299 ~I~L~ 303 (424)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 77654
No 62
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=80.76 E-value=0.61 Score=48.60 Aligned_cols=54 Identities=20% Similarity=0.260 Sum_probs=31.3
Q ss_pred ccceEecccchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014464 221 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297 (424)
Q Consensus 221 ~ad~vpvG~DQ~~hie---LaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~ 297 (424)
-+|+...|.||..++. .++-++. | ++.|..++.. ..+- . +| +|||||. +
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l~-~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWWT-K-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCCE-E-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--ccee-c-CC-ceecccc---C
Confidence 3689999999977542 2322221 2 3445444432 2332 2 55 8999997 5
Q ss_pred ceeec
Q 014464 298 SRINL 302 (424)
Q Consensus 298 s~I~L 302 (424)
|.|..
T Consensus 330 Nvi~p 334 (542)
T 3u1f_A 330 NVFDP 334 (542)
T ss_dssp BCCCH
T ss_pred CCCCh
Confidence 77754
No 63
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=80.51 E-value=3.7 Score=44.67 Aligned_cols=76 Identities=13% Similarity=0.258 Sum_probs=46.8
Q ss_pred CceEEEec-CCCCcchhhhhHH-HHHH--HHHhccccccccccCceEEEE-EeccceecC-------CCCHHH-HHHHHH
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLG-AIKN--WIALQPFCDLMLQNSYETLFF-IVDLHAITL-------PYDTQQ-LSKATR 141 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylg-ai~~--~~~l~~~~~~~~Q~~~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~ 141 (424)
+..|.+++ -|+|.+||||..+ .+.. +..+ ....|++|++. -.|-|.+-. ..++.+ ..++..
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy------~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~ 76 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRY------LRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHE 76 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHH------HHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHH------HHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35566665 6679999999987 3321 2222 01348887555 456665421 124543 445556
Q ss_pred HHHHHHHHcCccCCc
Q 014464 142 ETAAIYLACGIDNSK 156 (424)
Q Consensus 142 ~~~~~~lA~GlDp~k 156 (424)
.+..+|.++|++.+.
T Consensus 77 ~~~~~~~~lgis~D~ 91 (722)
T 1rqg_A 77 QIKITFQRAKISFDF 91 (722)
T ss_dssp HHHHHHHHHTCCCSE
T ss_pred HHHHHHHHhCCCCCC
Confidence 777888999998874
No 64
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=79.59 E-value=1.1 Score=46.06 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=44.7
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhcccccccccc-CceEEEE--Eeccceec------CCCCHHHH-HHHHHHHHHHH
Q 014464 78 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQN-SYETLFF--IVDLHAIT------LPYDTQQL-SKATRETAAIY 147 (424)
Q Consensus 78 i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~-~~~~~i~--IaDlhA~t------~~~~~~~i-~~~~~~~~~~~ 147 (424)
.++|--|.|.+||||.-.++-.-+- .++++. |++|++. +.|+=.-+ ...++.++ ..+...+..++
T Consensus 26 yv~gPt~y~~~HiGHar~~v~~D~l-----~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 26 YVCGITVYDLCHIGHGRTFVAFDVV-----ARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EECCCBSSSCCBHHHHHHHHHHHHH-----HHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCcCCCCCcccccHHHHHHHHH-----HHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455555599999998765543222 234333 7888655 34442111 01244333 34455677888
Q ss_pred HHcCccCCceEEEEcCC
Q 014464 148 LACGIDNSKASVFVQSH 164 (424)
Q Consensus 148 lA~GlDp~k~~if~QS~ 164 (424)
.++|+.+.. .+..+|+
T Consensus 101 ~~LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 101 DALNILRPD-MEPRATH 116 (461)
T ss_dssp HHTTCCCCS-BCCBGGG
T ss_pred HHcCCCCCc-ccccccc
Confidence 899998522 2345555
No 65
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=78.70 E-value=0.94 Score=51.00 Aligned_cols=60 Identities=23% Similarity=0.251 Sum_probs=34.0
Q ss_pred cccceEecccchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~-hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
+-+|+...|.||.. |+...+-...- .++. -+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 46899999999964 65554322211 1221 1224434332 23332 56 7999997 57
Q ss_pred eeecC
Q 014464 299 RINLL 303 (424)
Q Consensus 299 ~I~L~ 303 (424)
.|.+.
T Consensus 658 vv~p~ 662 (967)
T 1wz2_A 658 VLNFI 662 (967)
T ss_dssp CCBHH
T ss_pred CCCHH
Confidence 77654
No 66
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=77.58 E-value=0.42 Score=49.51 Aligned_cols=61 Identities=28% Similarity=0.178 Sum_probs=33.0
Q ss_pred cceE--ecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCCc
Q 014464 222 SDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQS 298 (424)
Q Consensus 222 ad~v--pvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~-~KMSKS~p~~~s 298 (424)
.|.+ .+|.||..|+.--..+++.++ +..|..-+-.+ .+|.-..||+ .|||||. ++
T Consensus 235 ~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~-g~V~l~~dG~~~KMSKr~---Gn 292 (464)
T 3fnr_A 235 YGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA-QMVSLLKDGEPYKMSKRA---GN 292 (464)
T ss_dssp CSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-CCEEEEETTEECCC---C---CS
T ss_pred CCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-eeEEecCCCcccCCcCcC---CC
Confidence 5644 699999999987777766544 22222111111 1331113553 5999997 57
Q ss_pred eeecCC
Q 014464 299 RINLLD 304 (424)
Q Consensus 299 ~I~L~D 304 (424)
.|.+.|
T Consensus 293 ~v~l~d 298 (464)
T 3fnr_A 293 FILMSD 298 (464)
T ss_dssp SCBHHH
T ss_pred CCCHHH
Confidence 887654
No 67
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=75.93 E-value=1.3 Score=48.77 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.7
Q ss_pred cccceEecccchHH
Q 014464 220 YQSDFVPVGEDQKQ 233 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~ 233 (424)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999974
No 68
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=75.91 E-value=1.1 Score=45.51 Aligned_cols=81 Identities=15% Similarity=0.065 Sum_probs=46.8
Q ss_pred eEEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHH
Q 014464 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAI 146 (424)
Q Consensus 77 ~i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i-~IaDlhA~t~-------~~~~~~-i~~~~~~~~~~ 146 (424)
..++|.-|.|.+||||..+.+.. +. +.+++. .|++|.+ .-.|.|..-. ..++.+ ..++...+..+
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~--Dv---laR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~ 116 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTF--DL---VHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFRED 116 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHH--HH---HHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCCCcCccccHHHHHH--HH---HHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 44567777799999998765532 11 112222 3788754 3555554211 124433 34445677788
Q ss_pred HHHcCcc-CCceEEEEcCC
Q 014464 147 YLACGID-NSKASVFVQSH 164 (424)
Q Consensus 147 ~lA~GlD-p~k~~if~QS~ 164 (424)
+.++|+. ++ .++..|+
T Consensus 117 ~~~Lgi~~~d--~~~r~t~ 133 (414)
T 3c8z_A 117 MAALRVLPPH--DYVAATD 133 (414)
T ss_dssp HHHTTCCCCS--EEEEGGG
T ss_pred HHHcCCCCCc--ceecccc
Confidence 8899998 65 3445554
No 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=75.61 E-value=0.94 Score=50.40 Aligned_cols=60 Identities=28% Similarity=0.350 Sum_probs=36.3
Q ss_pred cccceEecccchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCc
Q 014464 220 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s 298 (424)
|-+|+...|.||.. +=.+|.++.-.. ..|. .| ..++.. ..+... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g~---------------~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMGE---------------RPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSSS---------------CSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcCC---------------CcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 45899999999975 345677766542 1231 23 222221 245443 56 7999997 56
Q ss_pred eeecC
Q 014464 299 RINLL 303 (424)
Q Consensus 299 ~I~L~ 303 (424)
.|...
T Consensus 536 vIdP~ 540 (862)
T 1gax_A 536 VIDPL 540 (862)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 77653
No 70
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=74.23 E-value=1.6 Score=48.97 Aligned_cols=57 Identities=32% Similarity=0.356 Sum_probs=33.4
Q ss_pred ccccceEecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCC
Q 014464 219 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 294 (424)
Q Consensus 219 ~~~ad~vpvG~DQ~~---hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P-~~l~~~~~~~l~~L~dg~~KMSKS~p 294 (424)
.+-+|+...|.||.. |-.+...++- .|. .| ..++.. .+|... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g~---------------~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RGV---------------SPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HSS---------------CSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hCC---------------CcccceeEe--eeEEcC-CC-cCccccc-
Confidence 356899999999973 4444444441 231 22 223221 255443 56 7999997
Q ss_pred CCCceeec
Q 014464 295 SDQSRINL 302 (424)
Q Consensus 295 ~~~s~I~L 302 (424)
+|.|.+
T Consensus 601 --GNvV~P 606 (917)
T 1ffy_A 601 --GNVIVP 606 (917)
T ss_dssp --SCCCCH
T ss_pred --CCcCCh
Confidence 577754
No 71
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=73.87 E-value=6.3 Score=40.75 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=12.0
Q ss_pred cccceEecccchHH
Q 014464 220 YQSDFVPVGEDQKQ 233 (424)
Q Consensus 220 ~~ad~vpvG~DQ~~ 233 (424)
+.+|+..+|.||..
T Consensus 264 ~p~di~~~G~D~~~ 277 (524)
T 2x1l_A 264 WPADLHMIGKDIIR 277 (524)
T ss_dssp CSCSEEEEEGGGHH
T ss_pred CCCeEEEEeechhH
Confidence 35899999999985
No 72
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=71.89 E-value=1.5 Score=46.06 Aligned_cols=31 Identities=35% Similarity=0.439 Sum_probs=18.0
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecC
Q 014464 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303 (424)
Q Consensus 265 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~ 303 (424)
++.|..++.. .+|.. +| +|||||. +|.|.+.
T Consensus 327 ~~~p~~v~~h--g~v~~--~G-~KMSKS~---GNvv~p~ 357 (560)
T 3h99_A 327 FRKPSNLFVH--GYVTV--NG-AKMSKSR---GTFIKAS 357 (560)
T ss_dssp BCCCSEEEEE--CCEEE--TT-EECCTTT---TCCCBHH
T ss_pred CCCCcEEEEE--eEEEe--CC-eeccccC---CCcCCHH
Confidence 4566544422 13322 56 7999997 5777653
No 73
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=70.32 E-value=13 Score=37.39 Aligned_cols=30 Identities=23% Similarity=0.085 Sum_probs=19.8
Q ss_pred HHhhhhccccceEecccchHH-HHHHHHHHH
Q 014464 213 MASDILLYQSDFVPVGEDQKQ-HLELTRELA 242 (424)
Q Consensus 213 QAADIl~~~ad~vpvG~DQ~~-hieLaRdia 242 (424)
|+...+-...|+.++|.|+.. |++...-..
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~ 266 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAHA 266 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHHH
Confidence 344444345789999999887 776554333
No 74
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=64.87 E-value=19 Score=37.48 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred CceEE-EecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEEE--Eecc---------c--eecC-----CCCHH
Q 014464 75 KKRIV-SGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLFF--IVDL---------H--AITL-----PYDTQ 134 (424)
Q Consensus 75 ~~~i~-sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i~--IaDl---------h--A~t~-----~~~~~ 134 (424)
++++| +|--|.|.+||||....+.. ++ +.+|++ .|++|.+. |.|+ | .+.. ..++.
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~--Dv---l~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~ 116 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFG--DL---LIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVY 116 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHH--HH---HHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHH--HH---HHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHH
Confidence 34444 47666699999997654321 21 223333 38888776 4454 2 2221 12443
Q ss_pred -HHHHHHHHHHHHHHHcCccCCc
Q 014464 135 -QLSKATRETAAIYLACGIDNSK 156 (424)
Q Consensus 135 -~i~~~~~~~~~~~lA~GlDp~k 156 (424)
...+++..+..++.++|+.++.
T Consensus 117 e~a~~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 117 EISEFFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCC
Confidence 4456667788889999998775
No 75
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=63.76 E-value=11 Score=41.88 Aligned_cols=76 Identities=12% Similarity=0.003 Sum_probs=45.6
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCHH-HHHHHHHHH
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDTQ-QLSKATRET 143 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~~-~i~~~~~~~ 143 (424)
++.+++++ -|||.+||||..+.+.. +. +-+|+ ..|++|.+. --|-|.+-. ..++. -..+++..+
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~--Dv---laRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~ 128 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIG--DV---IARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYM 128 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHH--HH---HHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHH--HH---HHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46677776 67799999998765432 11 11222 348887554 345555421 12332 334556677
Q ss_pred HHHHHHcCccCC
Q 014464 144 AAIYLACGIDNS 155 (424)
Q Consensus 144 ~~~~lA~GlDp~ 155 (424)
..++.++|+..+
T Consensus 129 ~~~l~~LGis~D 140 (880)
T 4arc_A 129 KNQLKMLGFGYD 140 (880)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHhCCCcC
Confidence 788889998877
No 76
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=58.43 E-value=5.5 Score=44.36 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=19.3
Q ss_pred cccceEecccch-HHHHHHHHHHHHH
Q 014464 220 YQSDFVPVGEDQ-KQHLELTRELAER 244 (424)
Q Consensus 220 ~~ad~vpvG~DQ-~~hieLaRdia~r 244 (424)
+-+|+...|.|| .-|+-.+|-+..-
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~ 555 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKF 555 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHH
Confidence 469999999999 6777777766543
No 77
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=56.25 E-value=5.3 Score=41.73 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=19.1
Q ss_pred HHHhhhhccccceEecccch-HHHHHHHH
Q 014464 212 LMASDILLYQSDFVPVGEDQ-KQHLELTR 239 (424)
Q Consensus 212 LQAADIl~~~ad~vpvG~DQ-~~hieLaR 239 (424)
-|+...|--..|+-.+|.|. .+|++--.
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHhenei 272 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEI 272 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHH
Confidence 35555555567999999996 46766543
No 78
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=54.94 E-value=19 Score=36.87 Aligned_cols=66 Identities=26% Similarity=0.147 Sum_probs=36.8
Q ss_pred HHhhhhccccceEecccchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014464 213 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 291 (424)
Q Consensus 213 QAADIl~~~ad~vpvG~DQ~-~hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~dg~~KMSK 291 (424)
|+...+--..|+..+|.|+. +|++. ++|...-. +| .+.|..++.. .+|.- +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~~--~~aq~~a~-~g--------------~~~~~~~~h~--g~v~~--~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHEN--EIAQSTCA-HD--------------GQYVNYWMHS--GMVMV--DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHHH--HHHHHHHH-SS--------------SCCEEEECCB--CCEEE--TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHHH--HHHHHHHh-cC--------------CCCCcEEEEe--eEEEE--CC-eEccc
Confidence 44444444678999999986 55433 34443221 24 2334444432 23332 55 79999
Q ss_pred CCCCCCceeecC
Q 014464 292 SAPSDQSRINLL 303 (424)
Q Consensus 292 S~p~~~s~I~L~ 303 (424)
|. +|.|.+.
T Consensus 270 S~---GN~v~~~ 278 (461)
T 1li5_A 270 SL---GNFFTVR 278 (461)
T ss_dssp GG---TCCCBHH
T ss_pred cC---CCccChh
Confidence 97 5777653
No 79
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=50.91 E-value=4.2 Score=42.36 Aligned_cols=70 Identities=27% Similarity=0.338 Sum_probs=31.7
Q ss_pred ccceEecccchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCC-CCCCccccCCCCC
Q 014464 221 QSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPSD 296 (424)
Q Consensus 221 ~ad~vpvG~DQ~~---hieLaRdia~r~n~~~g~~~~~~~~~~~~~~f~~P~~l~~~~~~~l~~L~-dg~~KMSKS~p~~ 296 (424)
..++-++|.|+.. ......+++.. .+| .+.|..++.+ +|.. . +| +|||||.
T Consensus 230 ~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~--- 284 (523)
T 1irx_A 230 GVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK--- 284 (523)
T ss_dssp CCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC------------
T ss_pred CCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC---
Confidence 3445588999887 22334566632 345 3456444332 4433 2 24 7999998
Q ss_pred CceeecCC-----CHHHHHHHhhh
Q 014464 297 QSRINLLD-----PKDVIANKIKR 315 (424)
Q Consensus 297 ~s~I~L~D-----~~e~I~kKI~k 315 (424)
+|.|.+.| .|+.++.=+.+
T Consensus 285 Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp -CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 45654432 56666665554
No 80
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=50.03 E-value=20 Score=39.70 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=29.2
Q ss_pred CceEEEe-cCCCCcchhhhhHHHHHHHHHhccccccc-cccCceEEEE-Eecccee
Q 014464 75 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETLFF-IVDLHAI 127 (424)
Q Consensus 75 ~~~i~sG-i~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~i~-IaDlhA~ 127 (424)
++.|++| =-|||.+|+||.++.... ++ +-+| ...|++|.+. --|-|.+
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~--Di---i~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQ--DA---LIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHH--HH---HHHHHHTTTSEEEEECEEBCCTH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHH--HH---HHHHHHhCCCccccccccCCCCc
Confidence 4566666 356899999998764432 22 1122 1348887554 5577776
No 81
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=50.00 E-value=12 Score=41.64 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.8
Q ss_pred cccceEecccch-HHHHHHHHHHHHHH
Q 014464 220 YQSDFVPVGEDQ-KQHLELTRELAERV 245 (424)
Q Consensus 220 ~~ad~vpvG~DQ-~~hieLaRdia~r~ 245 (424)
+-+|+-.+|.|| .-|+-.+|=...-+
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L 568 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLM 568 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHH
Confidence 468999999999 56888887554443
No 82
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=47.97 E-value=4 Score=42.11 Aligned_cols=15 Identities=13% Similarity=0.025 Sum_probs=5.0
Q ss_pred ceEecccchHHHHHH
Q 014464 223 DFVPVGEDQKQHLEL 237 (424)
Q Consensus 223 d~vpvG~DQ~~hieL 237 (424)
++||||.||++|.|-
T Consensus 235 ~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 235 TRVPLPVGTGNEDAA 249 (451)
T ss_dssp GCCBCC---------
T ss_pred cccccccccccchhh
Confidence 468999999999544
No 83
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=41.93 E-value=21 Score=39.60 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=43.8
Q ss_pred CceEEEe-cCCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEE-EeccceecC-------CCCH-HHHHHHHHHH
Q 014464 75 KKRIVSG-VQPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFF-IVDLHAITL-------PYDT-QQLSKATRET 143 (424)
Q Consensus 75 ~~~i~sG-i~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~-IaDlhA~t~-------~~~~-~~i~~~~~~~ 143 (424)
++.+.+| --|+|.+||||..+.+.. +. +-+|+ ..|++|.+. --|-|.+-. ..++ +-..+++..+
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~--Dv---l~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~ 108 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMG--DV---LARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQA 108 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHH--HH---HHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHH--HH---HHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4677777 345699999998765432 11 11222 247887644 334444321 1133 3345566677
Q ss_pred HHHHHHcCccCC
Q 014464 144 AAIYLACGIDNS 155 (424)
Q Consensus 144 ~~~~lA~GlDp~ 155 (424)
..++.++|+..+
T Consensus 109 ~~~~~~LGi~~D 120 (878)
T 2v0c_A 109 KESLRLMGILYD 120 (878)
T ss_dssp HHHHHHTTCCCC
T ss_pred HHHHHHhCCccC
Confidence 788888998655
No 84
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=39.88 E-value=14 Score=39.31 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=27.2
Q ss_pred cchhhhHHHHhhh--hc-----cccceEe--cccchHHHHHHHHHHHHHHh
Q 014464 205 ALLTYPVLMASDI--LL-----YQSDFVP--VGEDQKQHLELTRELAERVN 246 (424)
Q Consensus 205 g~l~YPvLQAADI--l~-----~~ad~vp--vG~DQ~~hieLaRdia~r~n 246 (424)
|..+|- +.|| .. ++.|.+. +|.||..|+.-...+++.++
T Consensus 343 G~~~Y~---t~Dia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 343 GTTLYL---TRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp SCCCHH---HHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCcCCC---CCcHHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 555563 5676 22 2456665 99999999988888887754
No 85
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=39.15 E-value=71 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=47.1
Q ss_pred cCChhhHHHHHHHHHHHhhhHHHHHHHHHhcChHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 014464 358 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD---KVLADGAAKAADIADATLNNVYQA 418 (424)
Q Consensus 358 ~l~~~dlK~~Lae~I~~~L~pirer~~~~~~~~~~l~---~IL~~Ga~kAr~iA~~Tl~~Vr~~ 418 (424)
+.|..-+.-.|...+..++.-||+.|..+.....|+. +-+-.|..-.-+.|-+|-.+|-+.
T Consensus 73 gyhievlqlilekildsfisvireqyhdlqaaasyittvrdhifkgtsfllkmalqtqreviqk 136 (146)
T 3zta_A 73 GYHIEVLQLILEKILDSFISVIREQYHDLQAAASYITTVRDHIFKGTSFLLKMALQTQREVIQK 136 (146)
T ss_dssp TCCTHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999988876666654 445577776667777777776553
No 86
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=38.94 E-value=22 Score=38.93 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=26.0
Q ss_pred ceEEEec-CCCCcchhhhhHHHHHHHHHhcccccccc-ccCceEEEEE-ecccee
Q 014464 76 KRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLML-QNSYETLFFI-VDLHAI 127 (424)
Q Consensus 76 ~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~~-Q~~~~~~i~I-aDlhA~ 127 (424)
+.|.+|. -|||.+||||.++.+..=+-. ++. ..|++|.+.. -|.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~-----R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIA-----RFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHH-----HHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHH-----HHHHcCCCccCcCCccCCCCC
Confidence 4444443 357999999998755431111 221 3488886543 355544
No 87
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=33.46 E-value=44 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 014464 391 AYLDKVLADGAAKAADIADATLNNVYQAMGFL 422 (424)
Q Consensus 391 ~~l~~IL~~Ga~kAr~iA~~Tl~~Vr~~~Gl~ 422 (424)
++|+.-|++--.+-.+|.++||.+--+.+|++
T Consensus 6 eeverklkefvrrhqeitqetlheyaqklgln 37 (52)
T 1y66_A 6 EEVERKLKEFVRRHQEITQETLHEYAQKLGLN 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 45667777777777888888888888887763
No 88
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=33.06 E-value=21 Score=36.75 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=26.0
Q ss_pred EEecCCCCcchhhhhHHHHHHHHHhccccccccccCceE--EEEEeccc
Q 014464 79 VSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYET--LFFIVDLH 125 (424)
Q Consensus 79 ~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q~~~~~--~i~IaDlh 125 (424)
|+.--|||.+|+||.-+++-.-.-. +-+--.|++| ..-|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~----r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLT----RLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHH----HHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHH----HHHHHcCCceEEEeeeCCcc
Confidence 6788999999999986654321111 0111237776 44577763
No 89
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=32.72 E-value=17 Score=39.83 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.5
Q ss_pred CceEEEec-CCCCcchhhhhHHHHHHHHHhccccccc-cccCceEE-EEEecccee
Q 014464 75 KKRIVSGV-QPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNSYETL-FFIVDLHAI 127 (424)
Q Consensus 75 ~~~i~sGi-~PTG~lHLGnylgai~~~~~l~~~~~~~-~Q~~~~~~-i~IaDlhA~ 127 (424)
++.++.|. -|||.+|+||.++.+.. +. +-+| ...|++|. +.--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~--D~---i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYK--DL---FPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHH--HH---HHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHH--HH---HHHHHHhcCCcccccccccCCCc
Confidence 46666776 67899999998864432 22 1122 13478864 445566665
No 90
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=30.88 E-value=9.5 Score=41.41 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=25.9
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCceeecCC-----CHHHHHHHhhhc
Q 014464 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 316 (424)
Q Consensus 265 f~~P~~l~~~~~~~l~~L~dg~~KMSKS~p~~~s~I~L~D-----~~e~I~kKI~kA 316 (424)
++.|..++.. .+|.. +| +|||||. +|.|+..| .+|.++==+.+.
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4556555432 23332 56 7999997 67887542 456666555543
No 91
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=28.38 E-value=22 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=26.5
Q ss_pred EEEecCCCCcchhhhhHHHHHHHHHhccccccccc-cCceEEE--EEecc
Q 014464 78 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQ-NSYETLF--FIVDL 124 (424)
Q Consensus 78 i~sGi~PTG~lHLGnylgai~~~~~l~~~~~~~~Q-~~~~~~i--~IaDl 124 (424)
=|+|--|+|.+|+||.-+++---. + -+++. .|++|+. -|.||
T Consensus 148 e~~spN~~~plHvGHlRs~iiGD~-l----aRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 148 EFSSPNIAKPFHAGHLRSTIIGGF-L----ANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp ECCCCBTTSCCBGGGHHHHHHHHH-H----HHHHHHTTCEEEEEEEEBCC
T ss_pred EecCCCCCCCCccchHHHHHHHHH-H----HHHHHHcCCCeeEEEeecCc
Confidence 377999999999999876553111 1 01122 4788754 47774
Done!