RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 014464
(424 letters)
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 737 bits (1904), Expect = 0.0
Identities = 293/401 (73%), Positives = 322/401 (80%), Gaps = 14/401 (3%)
Query: 24 SRGGLPSKYCKTPGLIRQNRNLATHNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQ 83
S G + PG + + A+ C C + + P + KKR+VSGVQ
Sbjct: 1 SSLGSLGRLLSKPGPLSGS---ASSASC---CSAATAATAPEKEAPPKVARKKRVVSGVQ 54
Query: 84 PTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLSKATRET 143
PTGSIHLGNYLGAIKNW+ALQ +Y+T F +VDLHAITLP+D ++L KATR T
Sbjct: 55 PTGSIHLGNYLGAIKNWVALQ--------ETYDTFFCVVDLHAITLPHDPRELGKATRST 106
Query: 144 AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVG 203
AAIYLACGID SKASVFVQSHV AH ELMWLLS +TPIGWLNKMIQFKEKS KAG ENVG
Sbjct: 107 AAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVG 166
Query: 204 VALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 263
V LLTYPVLMASDILLYQ+D VPVGEDQKQHLELTR++AERVN LYGGRKWKKLGGRGG+
Sbjct: 167 VGLLTYPVLMASDILLYQADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGS 226
Query: 264 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 323
+FKVPE LIPPAGARVMSLTDG SKMSKSAPSDQSRINLLDP DVIANKIKRCKTDS G
Sbjct: 227 VFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPPDVIANKIKRCKTDSFPG 286
Query: 324 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY 383
LEFDN ERPECNNLLSIYQL++GKTK EV EC +M WG FKPLLTDALIEHL PIQVRY
Sbjct: 287 LEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQVRY 346
Query: 384 EEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
EEIMSD +YLD VL +GA AA+IAD TL NVYQAMGF++R
Sbjct: 347 EEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQR 387
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 537 bits (1387), Expect = 0.0
Identities = 187/354 (52%), Positives = 239/354 (67%), Gaps = 25/354 (7%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 134
KKR++SG+QPTG +HLGNYLGAIKNW+ LQ + YE F I DLHA+T+P D +
Sbjct: 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQ--------DEYECFFCIADLHALTVPQDPE 52
Query: 135 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 194
+L + TRE AA YLACGID K+++FVQSHV H EL W+L+ TP+G L +M QFK+KS
Sbjct: 53 ELRENTRELAADYLACGIDPEKSTIFVQSHVPEHAELAWILNCITPLGELERMTQFKDKS 112
Query: 195 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 254
K ENV L TYPVLMA+DILLY++D VPVGEDQKQHLELTR++A R N LYG
Sbjct: 113 AK-QKENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIARRFNNLYGE--- 168
Query: 255 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314
+F VPEPLIP GARVM L KMSKS P+D + INLLD IA KIK
Sbjct: 169 ---------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIK 219
Query: 315 RCKTDS--SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMN--WGTFKPLLTD 370
+ TDS + +D +PE +NLL+IY +SG++ E+ E + +G FK L +
Sbjct: 220 KAVTDSERLREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAE 279
Query: 371 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
A++E L PI+ RYEE+++D AYLD++LA+GA KA +A TL V +AMG LR+
Sbjct: 280 AVVEFLAPIRERYEELLADPAYLDEILAEGAEKARAVASKTLKEVREAMGLLRK 333
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 394 bits (1014), Expect = e-137
Identities = 159/334 (47%), Positives = 201/334 (60%), Gaps = 29/334 (8%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT- 133
K R++SG+QP+G +HLGNYLGAI+NW+ LQ + YE FFI DLHAIT+ D
Sbjct: 5 KFRVLSGIQPSGKLHLGNYLGAIRNWVLLQ-------EEYYECFFFIADLHAITVRQDPT 57
Query: 134 -QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
+ L +ATRE AA YLA G+D K+++F+QS V H EL WLLS T G L +M QFK+
Sbjct: 58 EEDLRQATREVAADYLAVGLDPEKSTIFLQSEVPEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252
KS K G E++ + LLTYPVL A+DILLYQ+ VPVGEDQ QHLELTR++A R N+LYG
Sbjct: 118 KSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELTRDIARRFNHLYGE- 175
Query: 253 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 312
+F +PE LI AR+ L DG KMSKS P+ S I LLD I K
Sbjct: 176 -----------VFPLPEALISKV-ARLPGL-DGPGKMSKSDPN--SAIFLLDDPKTIRKK 220
Query: 313 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLT 369
IK+ TD +E+ +PE NL IY + E+ E + + G K L
Sbjct: 221 IKKAATDGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELA 280
Query: 370 DALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 403
+A+ E L PIQ R EE+ D AYLD +L GA K
Sbjct: 281 EAIQEFLKPIQERREELREDPAYLDDILRKGAEK 314
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 345 bits (888), Expect = e-117
Identities = 151/355 (42%), Positives = 191/355 (53%), Gaps = 37/355 (10%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLP-YDT 133
K R+++G+QP+G +HLG+YLGAI+ Q E I DLHAIT+ D
Sbjct: 2 KFRVLTGIQPSGKMHLGHYLGAIQTKWLQQF--------GVELFICIADLHAITVKQTDP 53
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
L KA E AA YLA G+D K +F+QS H EL WLLS G L +M QFK+K
Sbjct: 54 DALRKAREELAADYLAVGLDPEKTFIFLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDK 113
Query: 194 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 253
S ENV + LL+YPVL A+DILLYQ+D VPVG DQ QHLELTR+LAER N +
Sbjct: 114 SQA---ENVPIGLLSYPVLQAADILLYQADLVPVGIDQDQHLELTRDLAERFNKKF---- 166
Query: 254 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 313
F PE LI R+M L+ KMSKS P+ S I L D I KI
Sbjct: 167 --------KNFFPKPESLISKFFPRLMGLSG--KKMSKSDPN--SAIFLTDTPKQIKKKI 214
Query: 314 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTK-----GEVAEECQN--MNWGTFKP 366
++ TD F++ E+P NLL IYQ +S E+ E ++ + +G K
Sbjct: 215 RKAATDGGRVTLFEHREKPGVPNLLVIYQYLSFFLIDDDKLKEIYEAYKSGKLGYGECKK 274
Query: 367 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421
L + L E L IQ R EI LDK+L GA KA + A+ TL +VY+AMG
Sbjct: 275 ALIEVLQEFLKEIQERRAEI--AEEILDKILEPGAKKARETANKTLADVYKAMGL 327
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 343 bits (882), Expect = e-117
Identities = 128/304 (42%), Positives = 169/304 (55%), Gaps = 29/304 (9%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY-DTQQ 135
R++SG+QP+GS+HLG+YLGA + W+ LQ + YE FFI DLHA+T+ D ++
Sbjct: 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQ-------EAGYELFFFIADLHALTVKQLDPEE 53
Query: 136 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 195
L + TRE A YLACG+D K+++F QS V H EL WLLS G L +M FK+KS
Sbjct: 54 LRQNTRENAKDYLACGLDPEKSTIFFQSDVPEHYELAWLLSCVVTFGELERMTGFKDKS- 112
Query: 196 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 255
A GE+V + LLTYPVL A+DILLY++ VPVG DQ HLELTR++A R N LYG
Sbjct: 113 -AQGESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIARRFNKLYGE---- 167
Query: 256 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 315
IF P L+ GA + L KMSKS P+ + I L D I KI +
Sbjct: 168 --------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDPN--NAIFLTDSPKEIKKKIMK 216
Query: 316 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE--ECQ--NMNWGTFKPLLTDA 371
TD + P +NL+ IY E+ E E + + +G K LL +A
Sbjct: 217 AATDGGRTEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEA 276
Query: 372 LIEH 375
+ E
Sbjct: 277 IQEF 280
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 260 bits (667), Expect = 7e-85
Identities = 96/313 (30%), Positives = 134/313 (42%), Gaps = 42/313 (13%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYD---T 133
R+ +G PTG +HLG YL + + Q Q +E F I DL AI
Sbjct: 7 RVYTGFDPTGPLHLG-YLVPLMKLVQFQ-------QAGHEVFFLIGDLTAIIGDPSKSEE 58
Query: 134 QQLSKATRETAAI--YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK 191
++L LACG+D K+ + S H+EL WLL LN+M+QFK
Sbjct: 59 RKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLEHLELAWLLRDLGNHFSLNRMLQFK 118
Query: 192 EKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 250
+ + + + TYP+L A+DILL ++D P G DQ H+EL R+LA R N
Sbjct: 119 DVKKRLKQNPGISLGEFTYPLLQAADILLLKADLQPGGSDQWGHIELGRDLARRFNKKV- 177
Query: 251 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 310
FK P L P +++ DG KMSKSA + S I L D K+ +
Sbjct: 178 --------------FKKPVGLTNP----LLTGLDGGKKMSKSAGN--SAIFLDDEKESVY 217
Query: 311 NKIKRCKTDSSAGLEFDNLERPECNN-LLSIYQLISGKTKGEVAEE----CQNMN--WGT 363
KI++ TD + D E +N + I + GK AEE G
Sbjct: 218 KKIQKAYTDPDREVRKDLKLFTELSNEEIEILEAFLGKGPKREAEELLAREVTGLVHGGD 277
Query: 364 FKPLLTDALIEHL 376
K +A+ L
Sbjct: 278 LKKAAAEAVNALL 290
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 256 bits (657), Expect = 1e-82
Identities = 116/353 (32%), Positives = 174/353 (49%), Gaps = 33/353 (9%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDT 133
K I++G +PTG +HLG+Y+G++KN +ALQ N +E I D A+T +
Sbjct: 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQ--------NEHEQFVLIADQQALTDNAKNP 53
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
+++ + E A YLA GID +K+++F+QS + EL + + L + K +
Sbjct: 54 EKIRRNILEVALDYLAVGIDPAKSTIFIQSQIPELAELTMYYMNLVTVARLERNPTVKTE 113
Query: 194 -SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252
+ K G ++ LTYPV A+DI +++ VPVG+DQ +E TRE+ R N LY
Sbjct: 114 IAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTREIVRRFNSLY--- 170
Query: 253 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 312
G + PE L+P AG R+ L DG +KMSK S + I L D D I K
Sbjct: 171 --------GTDVLVEPEALLPEAG-RLPGL-DGKAKMSK---SLGNAIYLSDDADTIKKK 217
Query: 313 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWG-----TFKPL 367
+ TD + ++ + E N + + K EVAE + G K
Sbjct: 218 VMSMYTD-PNHIRVEDPGKVEGNVVFTYLDAF-DPDKAEVAELKAHYQRGGLGDVKCKRY 275
Query: 368 LTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 420
L + L E L PI+ R E D Y+ ++L G+ KA ++A TL+ V AMG
Sbjct: 276 LEEVLQELLAPIRERRAEFAKDPGYVLEILKAGSEKAREVAAQTLSEVKDAMG 328
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 234 bits (600), Expect = 2e-73
Identities = 124/408 (30%), Positives = 204/408 (50%), Gaps = 78/408 (19%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT-Q 134
R++SG++PTG +HLG+Y G +KNW+ LQ + YE FF+ D HA+T Y+T +
Sbjct: 3 DRVLSGMRPTGRLHLGHYHGVLKNWVKLQ--------HEYECFFFVADWHALTTHYETPE 54
Query: 135 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKS 194
+ K + +LA G+D ++A++F+QS V H EL LLS TP+GWL ++ +K++
Sbjct: 55 VIEKNVWDMVIDWLAAGVDPAQATLFIQSKVPEHAELHLLLSMITPLGWLERVPTYKDQQ 114
Query: 195 HKAGGENVGV-ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 253
K +++ L YP+L ++DIL+Y++ VPVGEDQ H+E+TRE+A R N+LYG
Sbjct: 115 EKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTREIARRFNHLYGREP 174
Query: 254 ---------WKKLGGRGGAIF--------------------------------------- 265
KKLG + ++
Sbjct: 175 GFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFG 234
Query: 266 ------KV----PEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 315
K+ P+ L+ A +++ L DG KMSKS + I L + + + KI+
Sbjct: 235 YLEGAGKIILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRT 288
Query: 316 CKTDSSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQNMNWGTF--KPLLTDAL 372
TD + D + PE + ++Q+ S + TK V + C++ G K + DA+
Sbjct: 289 MPTDPARVRRTDPGD-PEKCPVWQLHQVYSDEETKEWVQKGCRSAGIGCLECKQPVIDAI 347
Query: 373 IEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 420
+ P++ R ++ D + + ++ADG KA +A T+ +V +AMG
Sbjct: 348 LREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAMG 395
>gnl|CDD|183592 PRK12556, PRK12556, tryptophanyl-tRNA synthetase; Provisional.
Length = 332
Score = 226 bits (577), Expect = 7e-71
Identities = 119/357 (33%), Positives = 186/357 (52%), Gaps = 38/357 (10%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 134
+K +++G++PTG HLGNY+GAIK P + + L+FI D HA+ +D +
Sbjct: 3 EKIMLTGIKPTGYPHLGNYIGAIK------PALQMAKNYEGKALYFIADYHALNAVHDPE 56
Query: 135 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK--- 191
Q TRE AA +L+ G+D + QS V EL W+LS TP G +N+ +K
Sbjct: 57 QFRSYTREVAATWLSLGLDPEDVIFYRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKV 116
Query: 192 EKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 246
+++ +AG G N+G L TYP+LMA+DILL+Q+ VPVG+DQ QH+E+ R++A N
Sbjct: 117 DQNKEAGLDLDAGVNMG--LYTYPILMAADILLFQATHVPVGKDQIQHIEIARDIATYFN 174
Query: 247 YLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 306
+ + G F +PE +I ++ DG KMSKS + I L +
Sbjct: 175 HTF------------GDTFTLPEYVI-QEEGAILPGLDG-RKMSKSY---GNVIPLFAEQ 217
Query: 307 DVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEE--CQNMNWGTF 364
+ + I + KTDSS E + PE + L +IY+ + + + + E + WG
Sbjct: 218 EKLRKLIFKIKTDSSLPNEPKD---PETSALFTIYKEFATEEEVQSMREKYETGIGWGDV 274
Query: 365 KPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421
K L + L + +Y M++ + LD+ L GA +A +IA L + +A+GF
Sbjct: 275 KKELFRVVDRELAGPREKYAMYMNEPSLLDEALEKGAERAREIAKPNLAEIKKAIGF 331
>gnl|CDD|237036 PRK12284, PRK12284, tryptophanyl-tRNA synthetase; Reviewed.
Length = 431
Score = 185 bits (471), Expect = 4e-54
Identities = 121/355 (34%), Positives = 184/355 (51%), Gaps = 34/355 (9%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQL 136
R+++G+ TG+ HLGNY GAI+ IA Q E+ +F+ D HA+ D ++
Sbjct: 4 RVLTGITTTGTPHLGNYAGAIRPAIAAS------RQPGVESFYFLADYHALIKCDDPARI 57
Query: 137 SKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFK---EK 193
++T E AA +LA G+D + + + QS + EL WLL+ G LN+ +K +K
Sbjct: 58 QRSTLEIAATWLAAGLDPERVTFYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDK 117
Query: 194 SHKAGGE---NVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYG 250
+ AG + V L YPVLMA+DIL++ + VPVG DQ QH+E+ R++A+R N+LY
Sbjct: 118 NVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQHIEMARDIAQRFNHLY- 176
Query: 251 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIA 310
GG F +PE +I + A + L DG KMSKS + I L P++ +
Sbjct: 177 ----------GGEFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELK 221
Query: 311 NKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQNMNWGTFKPLL 368
I TDS A E + E + L +YQ + +T + WG K L
Sbjct: 222 KAIFSIVTDSRAPGE---PKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRL 278
Query: 369 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 423
+ + L P++ RYE +++ A ++ +L GAAKA IA L + +A+G LR
Sbjct: 279 FERIDRELAPMRERYEALIARPADIEDILLAGAAKARRIATPFLAELREAVG-LR 332
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 123 bits (310), Expect = 2e-32
Identities = 63/321 (19%), Positives = 110/321 (34%), Gaps = 74/321 (23%)
Query: 78 IVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT-------- 128
+ G+ PT S+H+G+ +G + + Q + +F I I
Sbjct: 2 LYCGIDPTADSLHIGHLIG-LLTFRRFQ-------HAGHRPIFLIGGQTGIIGDPSGKKS 53
Query: 129 --LPYDTQQLSKATRETAAIYLACGIDNS--KASVFVQSHV---RAHVELMWLLSSATPI 181
D +++ + R AA YLA GI +A++F S AH++ + L +
Sbjct: 54 ERTLNDPEEVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYV 113
Query: 182 GWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----DFVPVGEDQKQHLEL 237
++ + F+ +S + + TYP L A+D LL + D P G DQ ++ L
Sbjct: 114 NYMERKTSFQSRSEEG----ISATEFTYPPLQAADFLLLNTTEGCDIQPGGSDQWGNITL 169
Query: 238 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 297
RELA R N F + E L P V L K KS +
Sbjct: 170 GRELARRFN-----------------GFTIAEGLTIP---LVTKLDG--PKFGKSESGPK 207
Query: 298 SRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 357
S ++++I + + +K E+ Q
Sbjct: 208 WLDTEKTSPYEFYQFWI--NAVDS--------------DVINILKYFTFLSKEEIERLEQ 251
Query: 358 NMN----WGTFKPLLTDALIE 374
+ + L + + +
Sbjct: 252 EQYEAPGYRVAQKTLAEEVTK 272
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 74.5 bits (184), Expect = 1e-14
Identities = 83/346 (23%), Positives = 128/346 (36%), Gaps = 95/346 (27%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF----------IVDLHA- 126
+ +G P+G +H+G+ + F E + I D A
Sbjct: 69 VYTGFMPSGPMHIGHKM----------VF--------DELKWHQEFGANVYIPIADDEAY 110
Query: 127 ITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNK 186
++ + E +A G D K ++ QS +L A + K
Sbjct: 111 AARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENIKVYDL------AFELA---K 161
Query: 187 MIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDF------VPVGEDQKQHLELTR 239
+ F E G + + YP A+DIL Q + VPVG DQ H+ LTR
Sbjct: 162 KVNFSELKAIYGFTGETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDPHIRLTR 221
Query: 240 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG--ARVM-SLTDGLSKMSKSAPSD 296
++AER++ YG I P+ + M LT G KMS S P
Sbjct: 222 DIAERLHGGYG--------------------FIKPSSTYHKFMPGLTGG--KMSSSKP-- 257
Query: 297 QSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER-----PE-CNNLLSIYQLIS----- 345
+S I L D + + KI + T A LE +R P+ C +Y+L+
Sbjct: 258 ESAIYLTDDPETVKKKIMKALTGGRATLE---EQRKLGGEPDEC----VVYELLLYHLEE 310
Query: 346 --GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIM 387
+ K E+ EEC++ + G K + + E L Q + EE
Sbjct: 311 DDKELK-EIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEAR 355
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 52.6 bits (127), Expect = 2e-07
Identities = 63/249 (25%), Positives = 96/249 (38%), Gaps = 59/249 (23%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQPFCDLM-LQNS-YETLFFIVDLHA-ITLPYDTQQLS 137
G +P+G IHLG+ L K L LQ + ++ + D HA + D +++
Sbjct: 36 GFEPSGKIHLGHLLTMNK----------LADLQKAGFKVTVLLADWHAYLNDKGDLEEIR 85
Query: 138 KATRETAAIYLACGIDNSKASVFV-----QSHVRAHVELMWLLSSATPIGWLNKMIQ-FK 191
K ++ A G+D K FV Q + ++ L + T L + +
Sbjct: 86 KVAEYNKKVFEALGLDPDKTE-FVLGSEFQLDKEYWLLVLKLAKNTT----LARARRSMT 140
Query: 192 EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYG 250
+ E V+ L YP++ +DI D G DQ K H+ L RE+ ++ Y
Sbjct: 141 IMGRRM--EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM-LAREVLPKLGY--- 194
Query: 251 GRKWKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPK 306
K P PL+ L G KMSKS P S I + D
Sbjct: 195 ---------------KKPVCIHTPLLT-------GLDGGGIKMSKSKP--GSAIFVHDSP 230
Query: 307 DVIANKIKR 315
+ I KIK+
Sbjct: 231 EEIRRKIKK 239
>gnl|CDD|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino
acyl-tRNA synthetase. Class I amino acyl-tRNA
synthetase (aaRS) catalytic core domain. These enzymes
are mostly monomers which aminoacylate the 2'-OH of the
nucleotide at the 3' of the appropriate tRNA. The core
domain is based on the Rossman fold and is responsible
for the ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 143
Score = 47.1 bits (112), Expect = 2e-06
Identities = 40/218 (18%), Positives = 65/218 (29%), Gaps = 80/218 (36%)
Query: 78 IVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQLS 137
SG+ P G +H+G+ + L +Y L + V
Sbjct: 2 TFSGITPNGYLHIGHLRTIVTFDF---------LAQAYRKLGYKV--------------- 37
Query: 138 KATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA 197
+A ID++ + ++ + + A W+ ++
Sbjct: 38 --------RCIAL-IDDAGGLIGDPANKK------GENAKAFVERWIERIK--------- 73
Query: 198 GGENVGVALLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKW 254
+ Y L A+D LL + D G DQ H+EL EL ++
Sbjct: 74 -------EDVEYMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAG-------- 118
Query: 255 KKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 292
P L RVM +KMSKS
Sbjct: 119 ---------GPARPFGLTFG---RVMG--ADGTKMSKS 142
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 48.5 bits (116), Expect = 3e-06
Identities = 62/300 (20%), Positives = 102/300 (34%), Gaps = 45/300 (15%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLML--QNSYETLFFIVDLHA-ITLP 130
K ++ G PT S+HLG+ + P L Q +E + + D A I P
Sbjct: 30 KIKLYVGFDPTAPSLHLGHLV----------PLLKLRDFQQAGHEVIVLLGDATALIGDP 79
Query: 131 YDTQQLSK-ATRETAAIY-------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 182
+ K TRE +A +D KA S + + + I
Sbjct: 80 SGKSEERKLLTREEVQENAENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIF 139
Query: 183 WLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 242
+N+M++ S + + ++ YP+L A D + D G DQ ++ R+L
Sbjct: 140 SVNRMLRRDAFSSRL-ERGISLSEFIYPLLQAYDFVYLNVDLQIGGSDQWGNILKGRDLI 198
Query: 243 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302
R LG F + PL+ PA M ++G +S
Sbjct: 199 RRNL--------PSLG------FGLTVPLLTPADGEKMGKSEG-GAVSLDEGKYDFYQFW 243
Query: 303 LDPKDVIANKIKR--CKTDSSAGLEFDNLERP-----ECNNLLSIYQLISGKTKGEVAEE 355
++ D KI + L+ P + N I + + G+ AEE
Sbjct: 244 INTPDEDVKKILKLFTFLGLEEIEALVELKGPSPREVKENLAKEITKYVHGEEAALAAEE 303
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 38.0 bits (89), Expect = 0.008
Identities = 53/259 (20%), Positives = 95/259 (36%), Gaps = 54/259 (20%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPY- 131
R+ G PT S+HLG+ + +K L+ F D ++ + I D A I P
Sbjct: 32 PLRVYIGFDPTAPSLHLGHLVPLMK----LRRFQDA----GHKPIVLIGDATAMIGDPSG 83
Query: 132 DTQQLSKATRETAAIYLACGIDNSKA-----SVFVQSHVRAHVELMWLLSS--------A 178
+++ TRET +N++ F+ + WL
Sbjct: 84 KSEERKLLTRETVL-------ENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDV 136
Query: 179 TPIGWLNKMIQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV-GEDQKQHLE 236
+N+M++ K + + YP+L A D + Y + + + G DQ ++
Sbjct: 137 GKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV-YLNKDLQLGGSDQWGNIL 195
Query: 237 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS- 295
R+L R+ KK+ G + PL+ + M ++G + S +
Sbjct: 196 AGRDLIRRLGQ-------KKVVG-------LTTPLLTGLDGKKMGKSEGGAVWLDSEKTS 241
Query: 296 ----DQSRINLLDPKDVIA 310
Q +N+ D DV
Sbjct: 242 PYDFYQYWMNIED-ADVKR 259
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 37.6 bits (88), Expect = 0.009
Identities = 56/258 (21%), Positives = 88/258 (34%), Gaps = 63/258 (24%)
Query: 81 GVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT----Q 134
G PT S+HLG+ + +K Q Q +E + I D A I P +
Sbjct: 6 GFDPTAPSLHLGHLVPLMK-LRDFQ-------QAGHEVIVLIGDATAMIGDPSGKSEERK 57
Query: 135 QLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELM----WLLSSATPIGWL------ 184
L A Y + + + + WLLS + L
Sbjct: 58 LLDLELIRENAKYYKKQLKA-----ILDFIPPEKAKFVNNSDWLLS----LYTLDFLRLG 108
Query: 185 -----NKMIQFK-EKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 238
N+M++ K E + + YP+L A D + D G DQ+ ++ L
Sbjct: 109 KHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDFVYLDVDLQLGGSDQRGNITLG 168
Query: 239 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298
R+L ++ Y KK + + PL+ DG KMSKS +
Sbjct: 169 RDLIRKLGY-------KK-------VVGLTTPLLTGL--------DG-GKMSKSEG-NAI 204
Query: 299 RINLLDPKDVIANKIKRC 316
+LD + KI+
Sbjct: 205 WDPVLDSPYDVYQKIRNA 222
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 36.0 bits (83), Expect = 0.034
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 22/110 (20%)
Query: 205 ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 264
A + YP++ +DI ++D +G DQ++ L RE + + GRK K
Sbjct: 159 AQVLYPLMQCADIFFLKADICQLGLDQRKVNMLAREYCDLI-----GRKLK--------- 204
Query: 265 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 314
P+I + + L G +KMSKS P S I + D ++ +A KI+
Sbjct: 205 -----PVI-LSHHMLAGLKQGQAKMSKSDPD--SAIFMEDTEEDVARKIR 246
>gnl|CDD|225207 COG2326, COG2326, Uncharacterized conserved protein [Function
unknown].
Length = 270
Score = 34.2 bits (79), Expect = 0.086
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 18/79 (22%)
Query: 229 EDQKQHLELTRELAERVNYLYGGRKWKKL--------GGRGGAIFKVPEPLIPPAGARVM 280
ED ++ LEL + ++ + + G+GGAI ++ E L P GARV+
Sbjct: 48 EDYEKELELLQIELVKLQRWVAETGQRVVIVFEGRDAAGKGGAIKRITEAL-NPRGARVV 106
Query: 281 SLTDGLSKMSKSAPSDQSR 299
+L AP+D+ R
Sbjct: 107 ALP---------APTDRER 116
>gnl|CDD|173912 cd02156, nt_trans, nucleotidyl transferase superfamily. nt_trans
(nucleotidyl transferase) This superfamily includes the
class I amino-acyl tRNA synthetases, pantothenate
synthetase (PanC), ATP sulfurylase, and the
cytidylyltransferases, all of which have a conserved
dinucleotide-binding domain.
Length = 105
Score = 30.6 bits (69), Expect = 0.43
Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 23/76 (30%)
Query: 217 ILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 276
+ D GED +Q+ EL R W K + PE + P
Sbjct: 52 KESIEEDISVCGEDFQQNRELYR--------------WVK---DNITLPVDPEQVELPRL 94
Query: 277 ARVMSLTDGLSKMSKS 292
+ MSK
Sbjct: 95 N------LETTVMSKR 104
>gnl|CDD|112775 pfam03976, PPK2, Polyphosphate kinase 2 (PPK2). Inorganic
polyphosphate (polyP) plays a role in metabolism and
regulation and has been proposed to serve as a energy
source in a pre-ATP world. In prokaryotes, the synthesis
and utilisation of polyP are catalyzed by PPK1, PPK2 and
polyphosphatases. Proteins with a single PPK2 domain
catalyze polyP-dependent phosphorylation of ADP to ATP,
whereas proteins containing 2 fused PPK2 domains
phosphorylate AMP to ADP. The structure of PPK2 from
Pseudomonas aeruginosa has revealed a a 3-layer
alpha/beta/alpha sandwich fold with an alpha-helical lid
similar to the structures of microbial thymidylate
kinases.
Length = 229
Score = 30.4 bits (69), Expect = 1.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 23/81 (28%)
Query: 229 EDQKQHLELTRELAE----------RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGAR 278
E + + +L EL + ++ ++ GR G+GGAI +V E L P G R
Sbjct: 6 EYEAELAKLQIELVKLQEWVYAEGKKLVVIFEGRD---AAGKGGAIKRVTEAL-NPRGYR 61
Query: 279 VMSLTDGLSKMSKSAPSDQSR 299
+++L AP+++ R
Sbjct: 62 IVALP---------APTEEER 73
>gnl|CDD|191352 pfam05716, AKAP_110, A-kinase anchor protein 110 kDa (AKAP 110).
This family consists of several mammalian protein kinase
A anchoring protein 3 (PRKA3) or A-kinase anchor protein
110 kDa (AKAP 110) sequences. Agents that increase
intracellular cAMP are potent stimulators of sperm
motility. Anchoring inhibitor peptides, designed to
disrupt the interaction of the cAMP-dependent protein
kinase A (PKA) with A kinase-anchoring proteins (AKAPs),
are potent inhibitors of sperm motility. PKA anchoring
is a key biochemical mechanism controlling motility.
AKAP110 shares compartments with both RI and RII
isoforms of PKA and may function as a regulator of both
motility- and head-associated functions such as
capacitation and the acrosome reaction.
Length = 685
Score = 30.4 bits (68), Expect = 2.3
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 368 LTDALIEHLHPIQVRYEEIMSDSAYLDKV----LADGAAKAADIADATLNNVYQAM 419
L D+ +++LH + +M+D+ ++ V + G+ KA DI DA L +Y +
Sbjct: 167 LIDSFMKNLHNVT---GVLMTDTDFVSAVKRNLFSHGSQKATDIMDAMLKKLYSVL 219
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form
a separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 29.9 bits (67), Expect = 3.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 75 KKRIVSGVQPTGSIHLGNY 93
+ SG+ P+G IH+GN+
Sbjct: 19 LYTVASGITPSGHIHIGNF 37
>gnl|CDD|237206 PRK12793, flaF, flagellar biosynthesis regulatory protein FlaF;
Reviewed.
Length = 115
Score = 28.0 bits (63), Expect = 3.4
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 17/57 (29%)
Query: 380 QVRYEEIMSDSAYLDK------------VLADGAAKAADIADATLNNVYQAMGFLRR 424
Q Y E+M DS + +L AK A +A +A+ F RR
Sbjct: 3 QFSYAEVMEDSVASARERERQAFDRSIDLLEAARAKGAYSREAI-----EALYFTRR 54
>gnl|CDD|213852 TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family.
Members of this protein family are designated
polyphosphate kinase 2 (PPK2) after the characterized
protein in Pseudomonas aeruginosa. This family comprises
one of three well-separated clades in the larger family
described by pfam03976. PA0141 from this family has been
shown capable of operating in reverse, with GDP
preferred (over ADP) as a substrate, producing GTP (or
ATP) by transfer of a phosphate residue from
polyphosphate. Most species with a member of this family
also encode a polyphosphate kinase 1 (PPK1) [Central
intermediary metabolism, Phosphorus compounds].
Length = 230
Score = 28.7 bits (65), Expect = 5.2
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 21/79 (26%)
Query: 229 EDQKQHL--ELT------RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 280
E + + L EL +E R+ ++ GR G+GG I ++ E L P GARV+
Sbjct: 8 EAELERLQIELVKLQEWVKETGARIVIVFEGRD---AAGKGGTIKRITEHL-NPRGARVV 63
Query: 281 SLTDGLSKMSKSAPSDQSR 299
+L P+D+ R
Sbjct: 64 AL---------PKPTDRER 73
>gnl|CDD|184108 PRK13518, PRK13518, carboxylate-amine ligase; Provisional.
Length = 357
Score = 29.0 bits (65), Expect = 5.5
Identities = 10/38 (26%), Positives = 26/38 (68%)
Query: 143 TAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 180
TA +++ G+D++ +V++ + +R H+ ++ LS+ +P
Sbjct: 133 TAGLHVHVGVDDADKAVWIANELRWHLPILLALSANSP 170
>gnl|CDD|225566 COG3022, COG3022, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 253
Score = 28.4 bits (64), Expect = 6.1
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 263 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK-IKRCKTDSS 321
+ K+ L P + +M ++D K A + R + + A + I D
Sbjct: 33 ELLKILRKLSPNQISSLMKISD------KLAGLNAQRFQDWETQFTPARQAILAFNGDVY 86
Query: 322 AGLEFDNLERPECNNLLSIYQLISG 346
GL+ + L + L +++SG
Sbjct: 87 TGLDAETLSEKDQAYLQQHLRILSG 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,204,952
Number of extensions: 2013510
Number of successful extensions: 1609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1551
Number of HSP's successfully gapped: 35
Length of query: 424
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 324
Effective length of database: 6,502,202
Effective search space: 2106713448
Effective search space used: 2106713448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.3 bits)