RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014464
(424 letters)
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
structural genomics, niaid, center for structural
genomics infectious diseases; 1.95A {Yersinia pestis}
Length = 346
Score = 564 bits (1457), Expect = 0.0
Identities = 158/366 (43%), Positives = 217/366 (59%), Gaps = 23/366 (6%)
Query: 61 LSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFF 120
+SEP + S K + SG QP+G + +GNY+GA++ W+ +Q + Y+ ++
Sbjct: 1 MSEPMVLSKPTVSSKPIVFSGAQPSGELTIGNYMGALRQWVQMQ--------DDYDCIYC 52
Query: 121 IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATP 180
IVDLHAIT D L K T +T A+YLACGID K+++FVQSHV H +L W L+ T
Sbjct: 53 IVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQSHVPEHSQLSWALNCYTY 112
Query: 181 IGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 240
G L++M QFK+KS + EN+ L YPVLMA+DILLYQ++ VPVGEDQKQHLEL+R+
Sbjct: 113 FGELSRMTQFKDKSAR-YAENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171
Query: 241 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 300
+A R N LYG IFK+PEP IP AGARVMSL D KMSKS + + I
Sbjct: 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVI 219
Query: 301 NLLDPKDVIANKIKRCKTDSSA--GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN 358
LL+ + KIKR TDS + +D ++ +NLL I ++G++ E+ +
Sbjct: 220 ELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTG 279
Query: 359 MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 418
+G K + DA+ L +Q RY D A L V+ +GAAKA A TL VY+A
Sbjct: 280 QMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREGAAKARARAQVTLAKVYEA 339
Query: 419 MGFLRR 424
+GF+ +
Sbjct: 340 IGFVAQ 345
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, rossmann
fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Length = 341
Score = 560 bits (1446), Expect = 0.0
Identities = 147/358 (41%), Positives = 212/358 (59%), Gaps = 21/358 (5%)
Query: 70 SSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL 129
S++ K ++SGVQP+G + +GNYLGA++ W +Q + Y+ + +VDLHAIT+
Sbjct: 1 SNAMSKPIVLSGVQPSGELSIGNYLGALRQWQQMQ--------DDYDCQYCVVDLHAITV 52
Query: 130 PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQ 189
D Q L +AT + AI LA G+D K+++FVQSHV H +L W+L+ T +G L++M Q
Sbjct: 53 RQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQ 112
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249
FK+KS + +V L YPVLMA+DILLY + VPVG DQKQHLEL R++A R N +Y
Sbjct: 113 FKDKSAR-YANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIY 171
Query: 250 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 309
+ IF +PEP IP ARVMSL D KMSKS + ++ I LL+ I
Sbjct: 172 SPEQ---------PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSI 222
Query: 310 ANKIKRCKTDSSAGLE--FDNLERPECNNLLSIYQLISGKTKGEVAEECQNM-NWGTFKP 366
KI + +TD+ +D + NL+ +Y +GKT E+ + + +G FK
Sbjct: 223 IKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKK 282
Query: 367 LLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
+ +A++ L P+Q Y+ I +D YL+ V+ DGA KA+ A TL VY A+GF+ R
Sbjct: 283 DVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR 340
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS,
induced FIT, ligase; HET: TYM; 1.72A {Geobacillus
stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A*
1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A*
1d2r_A 3u1v_A
Length = 328
Score = 556 bits (1435), Expect = 0.0
Identities = 161/349 (46%), Positives = 211/349 (60%), Gaps = 23/349 (6%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 135
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 136 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 195
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKS- 112
Query: 196 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 255
AG E V LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N YG
Sbjct: 113 -AGKEAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNKRYG----- 166
Query: 256 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 315
+F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 167 -------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 316 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 375
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 376 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
L PIQ RY M +S LD+VL +GA KA +A + + QAMG RR
Sbjct: 280 LRPIQERYHHWM-ESEELDRVLDEGAEKANRVASEMVRKMEQAMGLGRR 327
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis,
translation, class I tRNA synth rossman fold, high
motif, KMSKS motif; 2.80A {Bacillus subtilis}
Length = 388
Score = 558 bits (1440), Expect = 0.0
Identities = 157/356 (44%), Positives = 213/356 (59%), Gaps = 23/356 (6%)
Query: 69 ASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT 128
++K+ I SG+QP+GS+ LGNY+GA+K ++ LQ + Y + F IVD HAIT
Sbjct: 29 IDPFTMKQTIFSGIQPSGSVTLGNYIGAMKQFVELQ--------HDYNSYFCIVDQHAIT 80
Query: 129 LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 188
+P D +L K R AA+YLA G+D KA++F+QS V AH + W++ IG L +M
Sbjct: 81 VPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQSEVPAHAQAGWMMQCVAYIGELERMT 140
Query: 189 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 248
QFK+KS G E V LLTYP LMA+DILLY +D VP GEDQKQHLELTR LAER N
Sbjct: 141 QFKDKS--KGNEAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLAERFNKK 198
Query: 249 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308
Y IF +PE IP GAR+MSL D L KMSKS P+ ++ I LLD
Sbjct: 199 YND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQ 246
Query: 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLL 368
+ KIK TDS ++FD +P +NLL+IY ++ T E+ + + +G FK L
Sbjct: 247 LEKKIKSAVTDSEGIVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDL 306
Query: 369 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
+ ++ L PIQ RY E++ +S LD++L +GA +A A+ L + AMG R+
Sbjct: 307 AEVVVNALKPIQDRYYELI-ESEELDRILDEGAERANRTANKMLKKMENAMGLGRK 361
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase,
structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma
pneumoniae}
Length = 348
Score = 546 bits (1408), Expect = 0.0
Identities = 118/365 (32%), Positives = 180/365 (49%), Gaps = 36/365 (9%)
Query: 74 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 133
+ KR ++G+Q +G HLGNYLG +++ I LQ + F+ DLH+IT+ +
Sbjct: 3 MMKRALTGIQASGKQHLGNYLGVMQSLIELQ--------EQCQLFVFVADLHSITVDFQP 54
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
Q L + + LA G+D KA +F+QS + H + +L+ + +G L +M QFK K
Sbjct: 55 QALKQNNFDLVRTLLAVGLDPQKACLFLQSDLLEHSMMGYLMMVQSNLGELQRMTQFKAK 114
Query: 194 SHK-----AGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 248
+ G N+ LLTYP LMA DILLYQ D VPVG DQKQHLELTR+LA+R+
Sbjct: 115 KAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLELTRDLAQRIQKK 174
Query: 249 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308
+ ++P+ + R+M L D KMSKS+ + I L DPK+V
Sbjct: 175 F------------KLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEV 222
Query: 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKT---------KGEVAEECQNM 359
+ KI++ TDS + F + +P N+L+I + + + ++
Sbjct: 223 VVKKIRQATTDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTK 282
Query: 360 NWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 419
++ K LT+A + L IQ + E+I + + L G +A A TL Y
Sbjct: 283 SYLDLKNALTEATVNLLVNIQRKREQISRE--QVFNCLQAGKNQAQATARTTLALFYDGF 340
Query: 420 GFLRR 424
G +
Sbjct: 341 GLGSQ 345
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
structure; HET: ADP TRP; 2.15A {Campylobacter jejuni
subsp} PDB: 3m5w_A*
Length = 322
Score = 507 bits (1308), Expect = 0.0
Identities = 110/349 (31%), Positives = 186/349 (53%), Gaps = 27/349 (7%)
Query: 73 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYD 132
S R+++G+QP+G +H+GNY GAIK + Q + FI + HA+T D
Sbjct: 1 SNAMRVLTGLQPSGDLHIGNYFGAIKQMVDAQ--------EKSQMFMFIANYHAMTSSQD 52
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
++L + + + AA +L+ GID K+ ++QS V+ +EL W+LS TP+G L + +K+
Sbjct: 53 GEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLERAHSYKD 112
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252
K K G + L +YPVLMA+DILL+ + VPVG+DQ QH+E+ R++A +VN +G
Sbjct: 113 KVAK--GLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKVNNEWG-- 168
Query: 253 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 312
IF +PE + A V+ DG +KMSKS Q+ I++ + + +
Sbjct: 169 ----------EIFTLPEARVNEEVAVVVGT-DG-AKMSKS---YQNTIDIFSSEKTLKKQ 213
Query: 313 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDAL 372
I TDS+A + + E + ++ SG+ + ++ E +G FK L + +
Sbjct: 214 ISSIVTDSTALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELV 273
Query: 373 IEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421
+ + +Y E++ ++L ++L GA KA IA + +Y+ +G
Sbjct: 274 NAYFKEAREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL 322
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 503 bits (1298), Expect = e-180
Identities = 141/354 (39%), Positives = 199/354 (56%), Gaps = 30/354 (8%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY--DT 133
KR++SG+QP+G IH+GNYLGAIK W+A+ + + F IVD HA+T P D
Sbjct: 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGE------KLGRDAFFCIVDYHALTNPLAYDP 55
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
L++ T E A + +A G+D K ++FVQSHV H EL W+ ++ TP+G L +M QFK+K
Sbjct: 56 STLAQRTFEAALVNIAAGLDPEKVTLFVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDK 115
Query: 194 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 253
+ K E V LL YPVL A+DIL+Y++D VPVGEDQ QH+ELTRE+A R N+L+
Sbjct: 116 ASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTREIARRFNHLF---- 169
Query: 254 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 313
G F P+ L+ P RV + DG +KMSKS + I LL+P++ I KI
Sbjct: 170 --------GETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKI 217
Query: 314 KRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGE-VAEECQNMNWGT--FKPLLTD 370
+ D + + PE L + + K E + EE + GT K +L D
Sbjct: 218 QHLPDD-PQRIRLSDPGDPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFD 276
Query: 371 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLRR 424
L+E L PI+ R E + D Y+ L +GA +A +A AT+ V + +G L
Sbjct: 277 HLMEALRPIRERAEALKKDPDYVMDALLEGAKRARAVAQATMEEVREKVGLLLP 330
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 458 bits (1181), Expect = e-162
Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 32/373 (8%)
Query: 56 YCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSY 115
+ ++ + T P +++ + R+++G +PTG++HLG+ G+++N + LQ +
Sbjct: 3 FVDLEVPTMTTPTPAATPARPRVLTGDRPTGALHLGHLAGSLQNRVRLQ--------DEA 54
Query: 116 ETLFFIVDLHAITLPYD-TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWL 174
E + D+ A+T +D +Q+ + A YLA G+D K + VQS V EL
Sbjct: 55 ELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTCVVQSAVPELAELTVY 114
Query: 175 LSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 233
+ + L + K + + G GE V YPV A+DI + + VPVG+DQ
Sbjct: 115 FLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLP 174
Query: 234 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 293
LE TRE+ R N LY + P+ + R+ L DG +KMSKS
Sbjct: 175 MLEQTREIVRRFNALY------------APVLAEPQAQLSRV-PRLPGL-DGQAKMSKSL 220
Query: 294 PSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG--E 351
+ I L D D +A K+ TD L + R E N + +
Sbjct: 221 G---NAIALGDSADEVARKVMGMYTD-PGHLRASDPGRVEGNPVFTFLDAFDPDPARVQA 276
Query: 352 VAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIAD 409
+ ++ + + K L D L L PI+ R E D + + + +G A+ ++A
Sbjct: 277 LKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVLRFVTEGTARGREVAA 336
Query: 410 ATLNNVYQAMGFL 422
TL V +AM
Sbjct: 337 QTLGQVRRAMRLF 349
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 441 bits (1137), Expect = e-155
Identities = 118/354 (33%), Positives = 177/354 (50%), Gaps = 32/354 (9%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPY-DT 133
RI+SG++PTG +H+G+ +GA++NW+ LQ + E +F+ D HA+T Y D
Sbjct: 12 HMRILSGMRPTGKLHIGHLVGALENWVKLQ-------EEGNECFYFVADWHALTTHYDDV 64
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
+L + TR+ +LACGID K+ +FVQS V+ H EL L S + L ++ +KE
Sbjct: 65 SKLKEYTRDLVRGFLACGIDPEKSVIFVQSGVKEHAELALLFSMIVSVSRLERVPTYKEI 124
Query: 194 SHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252
+ + L YPVL A+DIL+Y+++ VPVGEDQ H+ELTRE+A R NYLY
Sbjct: 125 KSELNYKDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIELTREIARRFNYLY--- 181
Query: 253 KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 312
+F PE ++ ++ DG KMSK S + INL + +
Sbjct: 182 ---------DEVFPEPEAILSRV-PKLPGT-DG-RKMSK---SYGNIINLEISEKELEQT 226
Query: 313 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLL 368
I R TD A + + PE + +Q + V E C + K LL
Sbjct: 227 ILRMMTD-PARVRRSDPGNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLL 285
Query: 369 TDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 422
+ L PI + +I D Y+D V+ +G KA ++A T+ V +AM +
Sbjct: 286 LKNMKRKLAPIWENFRKIDEDPHYVDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
structural genomics; HET: TYR; 2.20A {Pyrococcus
horikoshii}
Length = 375
Score = 295 bits (757), Expect = 2e-97
Identities = 57/348 (16%), Positives = 111/348 (31%), Gaps = 35/348 (10%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 134
+ G + +G IHLG L A Q + +T F+ D H+
Sbjct: 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQ-------KAGIKTRVFLADWHSWINDKLGG 85
Query: 135 QLSKATRET--------AAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNK 186
L G D K + S + + + + L++
Sbjct: 86 DLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSR 145
Query: 187 MIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 246
+++ + GE + A L YP++ +DI G DQ++ + E+A+++
Sbjct: 146 VMRSITIMGRQMGEAIDFAKLIYPMMQVADIFYQGVTIAHAGMDQRKAHVIAIEVAQKLR 205
Query: 247 YLYGGRKWKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302
Y + +KL + P P KMSKS P S + +
Sbjct: 206 YHPIVHEGEKLKPVAVHHHLLLGLQEPPKWPIESEEEFKEIKAQMKMSKSKPY--SAVFI 263
Query: 303 LDPKDVIANKIKRCKTDSS------------AGLEFDNLERPECNNLLSIYQLISGKTKG 350
D + I K+++ + + + + ++ T
Sbjct: 264 HDSPEEIRQKLRKAFCPAREVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTTFE 323
Query: 351 EVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 396
E+ + ++ K + + LI L PI+ +E+ + V
Sbjct: 324 ELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRSV 371
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, tyrrs, pseudod translation, ATP-binding,
nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania
major} PDB: 3p0i_A* 3p0h_A*
Length = 690
Score = 295 bits (757), Expect = 1e-93
Identities = 63/376 (16%), Positives = 122/376 (32%), Gaps = 57/376 (15%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT---LPY 131
R G +P+G +H+ + N E +F++ D A+ +
Sbjct: 40 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCT-------AAGCEFVFWVADWFALMNDKVGG 92
Query: 132 DTQQLSKATRETAAIYLACGIDNSKAS-VFVQSHVRAHVELMWLLS-SATPIGWLNKMIQ 189
+ +++ R ++ A G+D K ++ + +H + W + + ++ +
Sbjct: 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKK 152
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249
K + A + YP++ DI ++D +G DQ++ L RE + +
Sbjct: 153 CCTIMGK-TEGTLTAAQVLYPLMQCCDIFFLKADICQLGLDQRKVNMLAREYCDLIGRKL 211
Query: 250 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 309
P L + L G +KMSKS P S I + D ++ +
Sbjct: 212 K-----------------PVILSHH---MLAGLKQGQAKMSKSDPD--SAIFMEDTEEDV 249
Query: 310 ANKIKRCKTD-----SSAGLEFDNLERPECNNLLSIY------------QLISGKTKGEV 352
A KI++ +SA + + N + Y I G T
Sbjct: 250 ARKIRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATY 309
Query: 353 AE-----ECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADI 407
+ ++ K L D + L P++ + L+ V + A
Sbjct: 310 EDLEQAFVSDEVSEDALKSCLIDEVNALLEPVRQHFASNEEAHELLEAVKSYRKDGATLP 369
Query: 408 ADATLNNVYQAMGFLR 423
T A
Sbjct: 370 LAETALPAAPAKPHAC 385
Score = 214 bits (547), Expect = 4e-63
Identities = 42/378 (11%), Positives = 100/378 (26%), Gaps = 65/378 (17%)
Query: 48 HNGCGFRCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQPF 106
+R TA A+ + + + + + K++
Sbjct: 356 EAVKSYRKDGATLPLAETALPAAPAKPHACMWMPALLKVPLDVAEGMIKVTKDF------ 409
Query: 107 CDLMLQNSYETLFFIVDLHAIT---LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 163
+ + D A+ + + +S A + A+ A G+ +S V
Sbjct: 410 --IAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPSSVKIVTENE 467
Query: 164 HVRAHVELMWLLS-SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS 222
+ + + W+ L+ + + GGE + ++ + L+
Sbjct: 468 VILGNCDDFWVSVIGIARKNLLSHVEELY------GGEVRNAGQVIAALMRVATALMLSV 521
Query: 223 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSL 282
V RE + + R+ +L
Sbjct: 522 SHVISTSLDGHINAFAREYTKERI-----------------------DCVQTLEGRIPAL 558
Query: 283 TDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR--C--KTDSSAGLEFD----------N 328
+ + + L D I KIK+ +++ + +
Sbjct: 559 HRPGAAPAVLGAD--DVLYLDDNDMDIRRKIKKAYSAPNEEANPVISVAQHLLAQHGALS 616
Query: 329 LERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEI 386
+ER E N Y T + +C + ++ K + L++ +
Sbjct: 617 IERGEANGGNVSY-----NTPEALVADCGSGALHPADLKAAVLQLLLDRSAQARALLNGE 671
Query: 387 MSDSAYLDKVLADGAAKA 404
+ + + + AK
Sbjct: 672 LKKNMTVLRNAEKKMAKK 689
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A
{Plasmodium falciparum}
Length = 373
Score = 280 bits (719), Expect = 9e-92
Identities = 57/348 (16%), Positives = 119/348 (34%), Gaps = 49/348 (14%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAIT---LPY 131
K G +P+G +H+ L L N +F+I D A +
Sbjct: 56 KLICYDGFEPSGRMHIAQGLLKSIIVNKLT-------SNGCTFIFWIADWFAHLNNKMSG 108
Query: 132 DTQQLSKATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLS-SATPIGWLNKMIQ 189
D +++ K ++ +CG++ S + W L + +N+M +
Sbjct: 109 DLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKR 168
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249
+ ++ GE + + YP + +DI D +G DQ++ L RE +
Sbjct: 169 CLKIMGRSEGEENYCSQILYPCMQCADIFFLNVDICQLGIDQRKVNMLAREYCDIKKI-- 226
Query: 250 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 309
+ + + + L +G KMSKS + S I + D + +
Sbjct: 227 ------------------KKKPVILSHGMLPGLLEGQEKMSKSDEN--SAIFMDDSESDV 266
Query: 310 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS------------GKTKGEVAEECQ 357
KIK+ +E + + + + Y + T E+ +
Sbjct: 267 NRKIKKAYCP-PNVIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYV 325
Query: 358 N--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 403
N ++ K + + + L P++ ++ + L+++ K
Sbjct: 326 NGFIHPLDLKDNVAMYINKLLQPVRDHFQNNIEAKNLLNEIKKYKVTK 373
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding;
HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Length = 348
Score = 273 bits (701), Expect = 2e-89
Identities = 56/341 (16%), Positives = 117/341 (34%), Gaps = 55/341 (16%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA---ITLPY 131
+G +P+G IH+ L + N + + + +I D A + +
Sbjct: 40 IFTAYNGFEPSGRIHIAQALITVMNTNNMIEC-------GGQMIIYIADWFAKMNLKMNG 92
Query: 132 DTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR----AHVELMWLLSSATPIGWLNKM 187
D ++ + R ++ ACGI+ S +++E M ++ + I + +
Sbjct: 93 DINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRC 152
Query: 188 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAER 244
Q ++ + + + + YP + A+D+ D +G DQ++ L E A
Sbjct: 153 CQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGIDQRKVNMLAIEYAND 209
Query: 245 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 304
+ I + +MSL+ KMSKS P I + D
Sbjct: 210 RGL---------------------KIPISLSHHMLMSLSGPKKKMSKSDPQ--GAIFMDD 246
Query: 305 PKDVIANKIKRCKTDSS-------AGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 357
+ ++ KI R +++ L NL + E+
Sbjct: 247 TEQEVSEKISRAYCTDETFDNPIFEYIKYLLLRWFGTLNLCG----KIYTDIESIQEDFS 302
Query: 358 NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 398
+MN K + + + + ++ +++ L V +
Sbjct: 303 SMNKRELKTDVANYINTIIDLVREHFKKPELSE-LLSNVKS 342
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann
fold, crystallography, X-RAY, P. horikoshii,
aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus
horikoshii}
Length = 392
Score = 251 bits (644), Expect = 3e-80
Identities = 52/358 (14%), Positives = 104/358 (29%), Gaps = 49/358 (13%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT- 133
+ +G P+G +H+G+ + + + I D +
Sbjct: 73 GFFLYTGRGPSGPMHIGHIIPFFATKWLQE-------KFGVNLYIQITDDEKFLFKENLT 125
Query: 134 -QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
+ + +A G D K +F S E+ ++ + F E
Sbjct: 126 FDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFTE 185
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQ-SDFVPVGEDQKQHLELTRELAERVNYLYGG 251
+S + ++ +P + + + +P DQ + L R+ AE + Y
Sbjct: 186 QSK--------IGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYWRLQRDFAESLGYYKT- 236
Query: 252 RKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 311
+ +P SLT KMS S ++ I L D + +
Sbjct: 237 -------------AALHSKFVP-------SLTSLSGKMSAS--KPETAIYLTDSPEDVEK 274
Query: 312 KIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKGEVAE---ECQN--MNWGT 363
K+ + + E PE + ++ + ++ E C+N + G
Sbjct: 275 KVWKFTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGE 334
Query: 364 FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGF 421
K L + E L Q R ++ + L +
Sbjct: 335 CKRYLISKIQEFLKEHQRRRKKAEKLVEKFKYTGKLAQEMWNEAIPEPLKRSHHHHHH 392
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytic domain, AN recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP:
c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Length = 437
Score = 190 bits (485), Expect = 3e-56
Identities = 57/364 (15%), Positives = 115/364 (31%), Gaps = 56/364 (15%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYD 132
+ +G P+ ++H+G+ + I L + + + D +
Sbjct: 108 PFYLYTGRGPSSEAMHVGHLIPFIFTK-------WLQDVFNVPLVIQMTDDEKYLWKDLT 160
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
Q E A +ACG D +K F+ S + + I Q K
Sbjct: 161 LDQAYGDAVENAKDIIACGFDINK--TFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKG 218
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTREL 241
++ + +++P + A+ +P DQ + +TR++
Sbjct: 219 I--FGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 276
Query: 242 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301
A R+ Y P+P + + +L +KMS S P+ S I
Sbjct: 277 APRIGY--------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSIF 313
Query: 302 LLDPKDVIANKIKRCKTDSSAGLEFD------NLERPECNNLLSIYQLISGKTKGEVAEE 355
L D I K+ + + N + L+ + L ++ ++
Sbjct: 314 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRKD 372
Query: 356 CQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLN 413
+ M G K L + L + Q R +E+ + + +A A +
Sbjct: 373 YTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFMTPRKLSFDFQKLAAALEH 432
Query: 414 NVYQ 417
+ +
Sbjct: 433 HHHH 436
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, LIG nucleotide-binding,
protein biosynthesis; 2.80A {Trypanosoma brucei}
Length = 395
Score = 177 bits (451), Expect = 7e-52
Identities = 47/356 (13%), Positives = 99/356 (27%), Gaps = 61/356 (17%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYD 132
+ +G P+ S+H+G+ + + L + + D
Sbjct: 78 PFYLYTGRGPSSESMHMGHLIPFMFTK-------WLQDSFRVPLVIQMTDDEKFYFRNIP 130
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
+Q+ T E +A G D +F ++ M+ + + + +
Sbjct: 131 MEQVEAMTTENIKDIIAMGFDPELTFIFRDFD---YMGCMY-----RTVAKIERAFTASQ 182
Query: 193 KSHKAG-GENVGVALLTYPVLMASDILLYQSD------------FVPVGEDQKQHLELTR 239
G +P + A+ +P DQ + LTR
Sbjct: 183 VRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTR 242
Query: 240 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299
++A R+ YL P + L+ KMS S +
Sbjct: 243 DIAPRLGYLK------------------PAVIHSK---FFPGLSGPKGKMSSS---SGTA 278
Query: 300 INLLDPKDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLI--SGKTKGEVAE 354
+ L D + ++ +KI + + ++ E + + + V +
Sbjct: 279 VLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKK 338
Query: 355 ECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIA 408
E + G K LL + + Q + + + + L
Sbjct: 339 EYMLGRIMTGEVKKLLINTITAITKTHQEKRKLVTDEDVQLFTSTRIMGPAKKAAT 394
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 174 bits (443), Expect = 1e-50
Identities = 54/363 (14%), Positives = 109/363 (30%), Gaps = 66/363 (18%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 133
+ +G P+ S+H+G+ + + L + + D +
Sbjct: 74 LFYLYTGRGPSSESLHVGHLVPFLFTK-------YLQDTFKVPLVIQLTDDEKFIFKSNL 126
Query: 134 --QQLSKATRETAAIYLACGIDNSKASVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQF 190
++ E +ACG D +F + + + + + F
Sbjct: 127 TLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKISCSQIKSIFGF 186
Query: 191 KEKSHKAGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTR 239
K+ + V +P + A+ VP DQ + + R
Sbjct: 187 KDSCN--------VGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVR 238
Query: 240 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 299
++A R+ YL P + + SL +KMS S + S
Sbjct: 239 DVAPRLGYLK------------------PSSIHSI---FLPSLQGSQTKMSASVQN--SS 275
Query: 300 INLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG-----KTKGEVAE 354
I + D ++ I NKI + E + ++ +Q + + E+ +
Sbjct: 276 IFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGK 335
Query: 355 ECQNMNWGT--FKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATL 412
+ + + K +L L++ Q E D V+A K+ +
Sbjct: 336 KYSSGEMLSGEIKSILVQELVKLTKNHQKNREA------INDDVIAKFTNKSREQLLKLF 389
Query: 413 NNV 415
N
Sbjct: 390 INK 392
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 172 bits (437), Expect = 2e-49
Identities = 47/365 (12%), Positives = 101/365 (27%), Gaps = 65/365 (17%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYD- 132
+ +G P+ S+HLG+ + + L + + D +
Sbjct: 102 PFFLYTGRGPSSDSMHLGHMIPFVFTK-------WLQEVFDVPLVIELTDDEKFLFKHKL 154
Query: 133 -TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV--ELMWLLSSATPIGWLNKMIQ 189
+ RE A +A G D +F E + +S +
Sbjct: 155 TINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFG 214
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELT 238
F + + + + + +P DQ + +
Sbjct: 215 FNDSDC--------IGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVC 266
Query: 239 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 298
R++A+++ Y +P + +L +KMS S + +
Sbjct: 267 RDVADKLKY--------------------SKPALLH-SRFFPALQGSTTKMSASDDT--T 303
Query: 299 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVA 353
I + D I KI + + E P+ + E
Sbjct: 304 AIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECY 363
Query: 354 EECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSA----YLDKVLADGAAKAADI 407
++ ++ + G K L + L E + Q R ++ ++ K++ +
Sbjct: 364 DKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAP 423
Query: 408 ADATL 412
T
Sbjct: 424 KPKTK 428
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann
fold catalytical domain, recognition domain, bound
Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP:
a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A*
2quk_A
Length = 477
Score = 164 bits (415), Expect = 6e-46
Identities = 54/337 (16%), Positives = 109/337 (32%), Gaps = 58/337 (17%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYD 132
+ +G P+ ++H+G+ + I L + + + D +
Sbjct: 155 PFYLYTGRGPSSEAMHVGHLIPFIFTK-------WLQDVFNVPLVIQMTDDEKYLWKDLT 207
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
Q E A +ACG D +K +F + + + K + F +
Sbjct: 208 LDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFY-----KNVVKIQKHVTFNQ 262
Query: 193 KSHKAG-GENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTRE 240
G ++ + +++P + A+ +P DQ + +TR+
Sbjct: 263 VKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRD 322
Query: 241 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 300
+A R+ Y P+P + + +L +KMS S P+ S I
Sbjct: 323 VAPRIGY--------------------PKPALLHST-FFPALQGAQTKMSASDPN--SSI 359
Query: 301 NLLDPKDVIANKIKRCKTDSSA------GLEFDNLERPECNNLLSIYQLISGKTKGEVAE 354
L D I K+ + N + L+ + L ++ +
Sbjct: 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF-LEDDDKLEQIRK 418
Query: 355 ECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSD 389
+ + M G K L + L + Q R +E+ +
Sbjct: 419 DYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE 455
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics,
medical structural GEN pathogenic protozoa, MSGPP,
ligase; 3.00A {Entamoeba histolytica}
Length = 386
Score = 154 bits (389), Expect = 7e-43
Identities = 40/333 (12%), Positives = 100/333 (30%), Gaps = 57/333 (17%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT- 133
I P + L Y+ L + + + I+D + T
Sbjct: 82 PTFIFIQKYPQKEVALEEYITLEFAR-------YLQDAFNIQVIIQILDDIKVLNREATI 134
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQS-HVRAHVELMWLLSSATPIGWLNKMIQFKE 192
+ SK + + LA G + K ++ + + L+ AT + F+
Sbjct: 135 NEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKATAYNVVQPFFNFEY 194
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDF---------VPVGEDQKQHLELTRELAE 243
+ + L P +M + + V Q + ++A
Sbjct: 195 SDN--------IGKLASPSIMTASMFSQSYSHFFSSPARCLVLDSIKNVQFHSIIDQIAT 246
Query: 244 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303
+N+ +P + +++ L G++K + + I L
Sbjct: 247 TLNF--------------------IQPTV--LFHKMVPLLSGVTKFDIPSD--HNSILLS 282
Query: 304 DPKDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLISGKTKG--EVAEECQN 358
D + KI + ++ + + + + + + S +V E+
Sbjct: 283 DNAKQVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSK 342
Query: 359 --MNWGTFKPLLTDALIEHLHPIQVRYEEIMSD 389
+ G K +++ ++ + + + + I +
Sbjct: 343 GELLSGELKKIVSASMKDFIVAYDAKKKPITTA 375
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, amino acylation; HET: TRP; 2.60A
{Encephalitozoon cuniculi}
Length = 406
Score = 146 bits (369), Expect = 7e-40
Identities = 47/333 (14%), Positives = 88/333 (26%), Gaps = 56/333 (16%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYD 132
+ +G P+ ++H+G+ + + + + I D +
Sbjct: 101 PFYLYTGRGPSSKTMHIGHTIPFLLCK-------YMQDAFKIRLVIQITDDEKFLWKSMR 153
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
+ RE + G D +F H E L ++K I E
Sbjct: 154 LEDAMAYGRENIKDIVTLGFDPKLTYIFSNVEASHHFEENIL--------KISKTINLNE 205
Query: 193 KSHKAG-GENVGVALLTYPVLMASDILLYQSDF--------VPVGEDQKQHLELTRELAE 243
G + + + +P + F VP DQ L R+ A+
Sbjct: 206 AIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPAAVDQDPFFRLARDKAK 265
Query: 244 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 303
+ P + + L KMS S P+ S I L
Sbjct: 266 ALGEKK------------------PSSIYVS---LLPDLKGVNRKMSASDPN--SSIYLD 302
Query: 304 DPKDVIANKIKRCKTDSSAGLEFDNLE---RPECNNLLSIYQLIS--GKTKGEVAEECQN 358
D +D I KI ++ E + + + + +
Sbjct: 303 DAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIK 362
Query: 359 --MNWGTFKPLLTDALIEHLHPIQVRYEEIMSD 389
+ K + E + Q + + D
Sbjct: 363 GEITSKEMKEKCVVVIQEFVSRYQESRKRVTDD 395
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi
aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia
lamblia atcc 50803}
Length = 451
Score = 104 bits (261), Expect = 1e-24
Identities = 64/367 (17%), Positives = 110/367 (29%), Gaps = 70/367 (19%)
Query: 75 KKRIVSGVQPT-GSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 133
I +G P+ G++HLG+ L I F Y + D + +
Sbjct: 91 PIYIYTGRGPSSGALHLGHLLPFIFTKYLQDAFKC------YVVIQITDDEKFLRNRSLS 144
Query: 134 -QQLSKATRETAAIYLACGIDNSKASVFVQSH---VRAHVELMWLLSSATPIGWLNKMIQ 189
++ TRE +ACG D K +F+ S ++ L+ PI L
Sbjct: 145 YAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFG 204
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249
F ++ V +P + D +P + A+ V+
Sbjct: 205 FSNDAN--------VGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKK 256
Query: 250 GGRKWKKLGGRGGAIFKVPEPL-----------IPPAGA--------------------- 277
+K K + V E + +G
Sbjct: 257 ASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKN 316
Query: 278 ------RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLER 331
+ L +KMS S P+ S I L D I NKI + S G + + R
Sbjct: 317 AYLLGKFLPGLQGSGTKMSASDPN--SAIYLTDTPAQIKNKIN--RYAFSGGRDTEEEHR 372
Query: 332 PECNNLLSI----YQLISGKTKGEVAE---ECQN--MNWGTFKPLLTDALIEHLHPIQVR 382
+L Y + K E+ + + + + G K L L + R
Sbjct: 373 AFGADLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAER 432
Query: 383 YEEIMSD 389
+++ +
Sbjct: 433 RDKVDTT 439
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 86.4 bits (214), Expect = 1e-18
Identities = 65/353 (18%), Positives = 101/353 (28%), Gaps = 94/353 (26%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIK-NWIALQPFCDLMLQNSYETLFFIVDLHA----ITLPY 131
++ G PTG H G ++ K L+ E + DLHA + P
Sbjct: 41 KLYWGTAPTGRPHCGYFVPMTKLAD---------FLKAGCEVTVLLADLHAFLDNMKAPL 91
Query: 132 DTQQLSKATRETAAIYL--ACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNK 186
+ E + + + K V S + ++ LS+ +
Sbjct: 92 EVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKR 151
Query: 187 MIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVN 246
K N ++ L YP++ A D D G DQ++ L E +
Sbjct: 152 AGADVVKQ----VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQRKIFVLAEENLPSLG 207
Query: 247 YLYGGRKWKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 302
Y K P++P KMS S P S+I+L
Sbjct: 208 Y------------------KKRAHLMNPMVPG--------LAQGGKMSASDP--NSKIDL 239
Query: 303 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------SGKTKGEVAE 354
L+ + KI F + E N LLS Q + G E
Sbjct: 240 LEEPKQVKKKINSA---------FCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFI 290
Query: 355 ECQNMNWGTF----------------------KPLLTDALIEHLHPIQVRYEE 385
+ G K + DA+ E L PI+ +
Sbjct: 291 DRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFAN 343
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 2.20A {Aeropyrum pernix}
Length = 364
Score = 72.5 bits (178), Expect = 3e-14
Identities = 57/347 (16%), Positives = 112/347 (32%), Gaps = 82/347 (23%)
Query: 81 GVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPY--DTQQLS 137
G +P+G H+G + K ++ + + HA I D +
Sbjct: 41 GYEPSGVAHIGWLVWMYK----VKDLVEA----GVDFSVLEATWHAYINDKLGGDMDLIR 92
Query: 138 KATRETAAIYLACGIDNSKASVFVQSHVRAH---VELMWLLSSATPIGWLNKMIQFKEKS 194
A R + A G+ + + + L+ ++ + + + + +
Sbjct: 93 AAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGR- 151
Query: 195 HKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY------- 247
+A V + L YP++ SDI D G DQ++ L R++AE++
Sbjct: 152 -RAEEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRKAHMLARDVAEKLGRKKPVAIH 210
Query: 248 ------LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301
L G + + G + KMSKS P ++ +
Sbjct: 211 TPIISSLQGPGRMEASQGEIDDVLAEV-------------------KMSKSKP--ETAVF 249
Query: 302 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNW 361
++D D I KI++ + ++ + N +L I + I G + +
Sbjct: 250 VVDSDDDIRRKIRKA---------YCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKY 300
Query: 362 GTF-----------------------KPLLTDALIEHLHPIQVRYEE 385
G K + ++LIE + PI+
Sbjct: 301 GGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLG 347
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus
jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A*
1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A
3n2y_A* 2hgz_A*
Length = 314
Score = 71.1 bits (175), Expect = 7e-14
Identities = 62/339 (18%), Positives = 108/339 (31%), Gaps = 86/339 (25%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDT 133
+K G +P+G IHLG+YL K + + ++ + + DL A + +
Sbjct: 28 EKSAYIGFEPSGKIHLGHYLQIKK----MIDLQNA----GFDIIILLADLAAYLNQKGEL 79
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQ 189
++ K ++ A G+ +V + L L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGLKAK----YVYGSEFQLDKDYTLNVYRLALKTTLKRARRSME 135
Query: 190 FKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 249
+ EN VA + YP++ + D G +Q++ L REL
Sbjct: 136 LIARE----DENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIHMLARELLP------ 185
Query: 250 GGRKWKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 305
K P++ G DG KMS S + I + D
Sbjct: 186 ----------------KKVVCIHNPVLT--G------LDGEGKMSSSKGNF---IAVDDS 218
Query: 306 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI--------------SGKTKGE 351
+ I KIK+ + E N ++ I + T
Sbjct: 219 PEEIRAKIKKA---------YCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNS 269
Query: 352 VAEECQNMNWGTF-----KPLLTDALIEHLHPIQVRYEE 385
E K + + LI+ L PI+ R E
Sbjct: 270 YEELESLFKNKELHPMYLKNAVAEELIKILEPIRKRLLE 308
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: TYR; 1.80A {Archaeoglobus
fulgidus}
Length = 323
Score = 70.0 bits (172), Expect = 2e-13
Identities = 63/338 (18%), Positives = 116/338 (34%), Gaps = 81/338 (23%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHA-ITLPYDTQQ 135
R G +P+G IHLG+ + K L + +E + + D+HA + ++
Sbjct: 34 RAYVGYEPSGEIHLGHMMTVQK----LMDLQEA----GFEIIVLLADIHAYLNEKGTFEE 85
Query: 136 LSKATRETAAIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKE 192
+++ +++A G+D S+A + S R +V + ++ T + + +
Sbjct: 86 IAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS 145
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGR 252
+ E+ V+ + YP++ A DI D G DQ++ L RE R+ Y
Sbjct: 146 RR----KEDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHMLARENLPRLGY----- 196
Query: 253 KWKKLGGRGGAIFKVP----EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308
P P++ DG KMS S + I++ DP +
Sbjct: 197 -------------SSPVCLHTPILVG--------LDG-QKMSSS---KGNYISVRDPPEE 231
Query: 309 IANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF---- 364
+ KI++ + E N +L I + G++ E G
Sbjct: 232 VERKIRKA---------YCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYAS 282
Query: 365 ------------------KPLLTDALIEHLHPIQVRYE 384
K + L L + R
Sbjct: 283 FEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDARKRLG 320
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique
anticodon recognit domain, dimer, ligase; 1.18A {Homo
sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Length = 372
Score = 69.0 bits (169), Expect = 5e-13
Identities = 65/339 (19%), Positives = 107/339 (31%), Gaps = 77/339 (22%)
Query: 77 RIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAI----TLPYD 132
+I G TG H+ ++ K + F E DLHA P++
Sbjct: 37 KIYWGTATTGKPHVAYFVPMSK----IADFLKA----GCEVTILFADLHAYLDNMKAPWE 88
Query: 133 TQQLSKATRETA--AIYLACGIDNSKASVFVQSHV---RAHVELMWLLSSATPIGWLNKM 187
+L + E A+ + G+ K + + + ++ LSS K
Sbjct: 89 LLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKA 148
Query: 188 IQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNY 247
K E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 149 GAEVVKQ----VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGY 204
Query: 248 LYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 307
L+ P ++ G SKMS S S+I+LLD K+
Sbjct: 205 ------------------SKRVHLMNP----MVPGLTG-SKMSSSEEE--SKIDLLDRKE 239
Query: 308 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTF--- 364
+ K+K+ F E N +LS + + K E G
Sbjct: 240 DVKKKLKKA---------FCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYT 290
Query: 365 -------------------KPLLTDALIEHLHPIQVRYE 384
K + AL + L PI+ ++
Sbjct: 291 AYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFN 329
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 2e-05
Identities = 75/480 (15%), Positives = 132/480 (27%), Gaps = 190/480 (39%)
Query: 53 FRCY--CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYL-----GAIKNWIALQP 105
+ Y + P ++S+ + V G+ L G ++
Sbjct: 123 IKNYITARIMAKRPFDKKSNSA-----LFRAVG-EGNAQL--VAIFGGQGNTDDY----- 169
Query: 106 FCDL-MLQNSYETLF-FIVDLHAITLPYDTQQLSKATRETAAIYLACGID--------NS 155
F +L L +Y L ++ A TL +L + T + ++ G++ ++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETL----SELIRTTLDAEKVFTQ-GLNILEWLENPSN 224
Query: 156 K------ASVFV--------Q-SH--VRAHV------ELMWLLSSATPIG---------- 182
S+ + Q +H V A + EL L AT
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 183 ----WLNKMIQFKEKSHKAGGENVGVALL---------TYPVLMASDILLYQSDFVPVGE 229
W + F KA + +L YP +L D + E
Sbjct: 285 ETDSWES----FFVSVRKA------ITVLFFIGVRCYEAYPNTSLPPSIL--EDSLENNE 332
Query: 230 DQ-----------KQHLELTRELAERVN-----------YLYGGRKWKKLGGRGGAIFKV 267
++ ++ + + N L G K + G
Sbjct: 333 GVPSPMLSISNLTQEQVQ---DYVNKTNSHLPAGKQVEISLVNGAKNLVVSG-------- 381
Query: 268 PEPLIPPAGARVMSLTDGLS----KMSKSAPSDQSRINLLDPKDVIANK----------- 312
PP SL GL+ K + DQSRI + K +N+
Sbjct: 382 -----PPQ-----SLY-GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 313 -----IKRCKTD-SSAGLEFDN--LERPECNNLLSIYQLISGK----TKGEVAEECQNMN 360
D + F+ ++ P +Y G G ++E
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIP-------VYDTFDGSDLRVLSGSISER----- 478
Query: 361 WGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMG 420
+ D +I V++E A +L G A+ + T N G
Sbjct: 479 -------IVDCIIRL----PVKWETTTQFKA--THILDFGPGGASGLGVLTHRNK-DGTG 524
Score = 37.0 bits (85), Expect = 0.013
Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 68/176 (38%)
Query: 263 AIFKV--PEPLIPP----AG------------ARVMSLTDGLS-------KMSKSAPSDQ 297
A F+ + LIP AG A VMS+ + M + P D+
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 298 S-----RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKG-- 350
+ ++P V +A + L+ + + + +T
Sbjct: 1802 LGRSNYGMIAINPGRV------------AASFSQEALQY--------VVERVGKRTGWLV 1841
Query: 351 EVAEECQNMNW--------GTFKPLLTDALIEHLHPIQVRYEEI--MSDSAYLDKV 396
E+ N N G + L D + L+ I+++ +I + S L++V
Sbjct: 1842 EIV----NYNVENQQYVAAGDLRAL--DTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 28.5 bits (63), Expect = 6.1
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 11/78 (14%)
Query: 350 GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRY---EEIMSDSAYLDKVLADGAAKAAD 406
G V+ + G F +L L E + Y +I + +A L + K +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTE----FENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 407 IADATLNNVYQAMGFLRR 424
+ + N A +R
Sbjct: 122 L----IKNYITARIMAKR 135
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein;
periplasmic binding protein, MBP, maltotriose; HET: MLR;
1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Length = 382
Score = 29.3 bits (66), Expect = 2.8
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 377 HPIQVRYEEIMSDSAYLDKVLADGAA-KAADIADATLNNV--YQAMGFL 422
+ ++V + + K L + ADI + V G +
Sbjct: 28 YGVEVEVQYVNFQD-IKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLI 75
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET:
TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1
d.66.1.4 PDB: 1h3e_A*
Length = 432
Score = 28.1 bits (63), Expect = 5.5
Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 207 LTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 266
L YP A D + ++D G DQ+ +L + RE+ YG
Sbjct: 173 LLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRA----YGQSP----------QVC 218
Query: 267 VPEPLIPPAGARVMSLTDGLSKMSKSA 293
PL+ DG KMSKS
Sbjct: 219 FLMPLLVG--------LDGREKMSKSL 237
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 27.1 bits (61), Expect = 6.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 373 IEHLHPIQVRYEE 385
+E + I+VRY E
Sbjct: 1 MESVTRIKVRYAE 13
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 6.5
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 396 VLADGAAKA--ADIADATLNNVYQAMGFLRR 424
++A G KA + L N+ A+ +L
Sbjct: 212 LVATGVYKARDIKAPGSGLGNIVAALDYLTT 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,299,574
Number of extensions: 370920
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 632
Number of HSP's successfully gapped: 37
Length of query: 424
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,021,377
Effective search space: 1319011656
Effective search space used: 1319011656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)