RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014464
(424 letters)
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 293 bits (751), Expect = 1e-97
Identities = 156/348 (44%), Positives = 206/348 (59%), Gaps = 23/348 (6%)
Query: 76 KRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQQ 135
K I SG+QP+G I +GNY+GA++ ++ LQ + Y F IVD HAIT+ D +
Sbjct: 2 KTIFSGIQPSGVITIGNYIGALRQFVELQ--------HEYNCYFCIVDQHAITVWQDPHE 53
Query: 136 LSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSH 195
L + R AA+YLA GID ++A++F+QS V AH + W+L IG L +M QFKEKS
Sbjct: 54 LRQNIRRLAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSA 113
Query: 196 KAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWK 255
+ G LLTYP LMA+DILLY +D VPVGEDQKQH+ELTR+LAER N
Sbjct: 114 GKEAVSAG--LLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAERFNK-------- 163
Query: 256 KLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 315
R G +F +PE IP GAR+MSL D KMSKS P+ ++ I LLD I KIK
Sbjct: 164 ----RYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS 219
Query: 316 CKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEH 375
TDS + +D +P +NLL+IY +SG++ E+ + + +G FK L +IE
Sbjct: 220 AVTDSEGTIRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIET 279
Query: 376 LHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 423
L PIQ RY M LD+VL +GA KA +A + + QAMG R
Sbjct: 280 LRPIQERYHHWMES-EELDRVLDEGAEKANRVASEMVRKMEQAMGLGR 326
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 184 bits (469), Expect = 6e-55
Identities = 52/344 (15%), Positives = 103/344 (29%), Gaps = 56/344 (16%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAI-TLPYD 132
+ +G P+ ++H+G+ + I L + + + D
Sbjct: 74 PFYLYTGRGPSSEAMHVGHLIPFIFTK-------WLQDVFNVPLVIQMTDDEKYLWKDLT 126
Query: 133 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE 192
Q E A +ACG D +K +F + I Q K
Sbjct: 127 LDQAYGDAVENAKDIIACGFDINKTFIFSDLDY--MGMSSGFYKNVVKIQKHVTFNQVKG 184
Query: 193 KSHKAGGENVGVALLTYPVLMASDILLYQSDF-----------VPVGEDQKQHLELTREL 241
++ + +++P + A+ +P DQ + +TR++
Sbjct: 185 IFGF--TDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDV 242
Query: 242 AERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 301
A R+ Y P L +L +KMS S P S I
Sbjct: 243 APRIGYPK------------------PALLHST---FFPALQGAQTKMSASDP--NSSIF 279
Query: 302 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECN-----NLLSIYQLISGKTKGEVAEEC 356
L D I K+ + ++ + + + L ++ ++
Sbjct: 280 LTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDY 339
Query: 357 QN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 398
+ M G K L + L + Q R +E+ + + + +
Sbjct: 340 TSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDE--IVKEFMT 381
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 167 bits (424), Expect = 6e-49
Identities = 50/345 (14%), Positives = 105/345 (30%), Gaps = 58/345 (16%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDTQ 134
+ +I G TG H+ ++ K L+ E DLHA
Sbjct: 32 ELKIYWGTATTGKPHVAYFVPMSKIAD--------FLKAGCEVTILFADLHAYLDNMKAP 83
Query: 135 QLSKATRETAAI------YLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMI 188
R + + G+ K + + E + + + +
Sbjct: 84 WELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSK 143
Query: 189 QFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 248
+ + K E+ ++ L YP L A D + D G DQ++ + + Y
Sbjct: 144 KAGAEVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQRKIFTFAEKYLPALGYS 202
Query: 249 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDV 308
+ + GL+ S+ ++S+I+LLD K+
Sbjct: 203 KR-------------------------VHLMNPMVPGLTGSKMSSSEEESKIDLLDRKED 237
Query: 309 IANKIKRCKTDS-----------SAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ 357
+ K+K+ + + F + ++ ++
Sbjct: 238 VKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFA 297
Query: 358 N--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 400
++ G K + AL + L PI+ ++ ++ L K+ +
Sbjct: 298 AEVVHPGDLKNSVEVALNKLLDPIREKF-----NTPALKKLASAA 337
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 111 bits (277), Expect = 2e-28
Identities = 58/319 (18%), Positives = 108/319 (33%), Gaps = 52/319 (16%)
Query: 75 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITL-PYDT 133
+K G +P+G IHLG+YL IK I LQ ++ + + DLHA +
Sbjct: 28 EKSAYIGFEPSGKIHLGHYL-QIKKMIDLQ-------NAGFDIIILLADLHAYLNQKGEL 79
Query: 134 QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEK 193
++ K ++ A G+ + + ++ L+ T + + ++
Sbjct: 80 DEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMEL--- 136
Query: 194 SHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRK 253
EN VA + YP++ +DI D G +Q++ L REL +
Sbjct: 137 -IAREDENPKVAEVIYPIMQVNDIHYLGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPV 195
Query: 254 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 313
GL K + S + I + D + I KI
Sbjct: 196 L-----------------------------TGLDGEGKMSSSKGNFIAVDDSPEEIRAKI 226
Query: 314 KRCKTDSSA--------GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN--MNWGT 363
K+ + ++ ++ + E+ +N ++
Sbjct: 227 KKAYCPAGVVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMD 286
Query: 364 FKPLLTDALIEHLHPIQVR 382
K + + LI+ L PI+ R
Sbjct: 287 LKNAVAEELIKILEPIRKR 305
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 77.7 bits (190), Expect = 2e-16
Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 20/185 (10%)
Query: 75 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQPFCDLMLQNSYETLFFIVDLHAITLPYDT 133
+ G PT +HLG+ + K Q + ++ + I D +
Sbjct: 33 PLTVKLGADPTRPDLHLGHAVVLRK-MRQFQ-------ELGHKVVLIIGDFTGMIGDPSG 84
Query: 134 QQLSKATRETAAIY-----------LACGIDNSKASVFVQSHVRAHVELMWLLSSATPIG 182
+ ++ + + S + ++ + +
Sbjct: 85 RSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMT 144
Query: 183 WLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 242
+ + K G + + L YP A D + ++D G DQ+ +L + RE+
Sbjct: 145 VAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQ 204
Query: 243 ERVNY 247
Sbjct: 205 RAYGQ 209
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 28.6 bits (63), Expect = 1.1
Identities = 5/35 (14%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 344 ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 378
+ + + + +NM W L ++ L
Sbjct: 189 VVAPSGDNITHKSENMKWYNGPTLE--EYLDQLEL 221
>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 317
Score = 28.2 bits (61), Expect = 2.1
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 75 KKRIV--SGVQPTGSIHLGNYLGAIKNWI 101
K++ V SG+ P+G +H+GN+ +I
Sbjct: 17 KEKYVVESGITPSGYVHVGNFRELFTAYI 45
>d1j5ya2 d.94.2.1 (A:68-174) Putative transcriptional regulator
TM1602, C-terminal domain {Thermotoga maritima [TaxId:
2336]}
Length = 107
Score = 26.5 bits (59), Expect = 2.8
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 340 IYQLISG----KTKGEVAEECQNMNWGTFKPL--LTDALIEHLHPIQVRYEEIM 387
+Y I G ++ EV + M +PL L+ + HLH I+ EE M
Sbjct: 40 VYGEIRGIIDVSSEEEVLKFVNLMEMAKTEPLLTLSGGV--HLHTIEAPDEETM 91
>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB
{Escherichia coli [TaxId: 562]}
Length = 286
Score = 26.7 bits (58), Expect = 4.7
Identities = 5/18 (27%), Positives = 13/18 (72%)
Query: 84 PTGSIHLGNYLGAIKNWI 101
P+G +H G+ + A+ +++
Sbjct: 11 PSGELHFGSLIAALGSYL 28
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 26.8 bits (59), Expect = 4.7
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 89 HLGNYLGAIKNWIALQPFCDLM---LQNSYETLFFIVDLHAITLPYDTQQLSKATRETAA 145
+G L L + L E + + L LP ++QQ+ + ++
Sbjct: 62 TIGLLLCHPDKVSLLNEYIRLFDFSGLRVDEAIRIL--LTKFRLPGESQQIERIIEAFSS 119
Query: 146 IYLACGIDN 154
Y +
Sbjct: 120 AYCENQDYD 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.396
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,504,875
Number of extensions: 67524
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 12
Length of query: 424
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 336
Effective length of database: 1,199,356
Effective search space: 402983616
Effective search space used: 402983616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)