BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014468
         (424 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NNN|A Chain A, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|B Chain B, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|C Chain C, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|D Chain D, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|E Chain E, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|F Chain F, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|G Chain G, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|H Chain H, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|I Chain I, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
 pdb|2NNN|J Chain J, Crystal Structure Of Probable Transcriptional Regulator
          From Pseudomonas Aeruginosa
          Length = 140

 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 19 NSRYGAAIALHIQQGVNPTEWVT-----EQAPAPQD 49
          N RY A  A  I  G+ PT+W       E  P PQ+
Sbjct: 21 NQRYAALFANGIGNGLTPTQWAALVRLGETGPCPQN 56


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,542,118
Number of Sequences: 62578
Number of extensions: 444482
Number of successful extensions: 969
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 1
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)