Query 014468
Match_columns 424
No_of_seqs 194 out of 809
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 12:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2diu_A KIAA0430 protein; struc 94.9 0.035 1.2E-06 43.6 5.0 41 12-52 47-89 (96)
2 2dnz_A Probable RNA-binding pr 92.3 0.22 7.5E-06 38.2 5.5 41 8-48 44-86 (95)
3 3p5t_L Cleavage and polyadenyl 91.9 0.11 3.6E-06 39.8 3.2 41 8-48 42-84 (90)
4 2d9o_A DNAJ (HSP40) homolog, s 91.4 0.31 1.1E-05 38.4 5.5 38 8-45 51-88 (100)
5 4fxv_A ELAV-like protein 1; RN 91.1 0.16 5.5E-06 39.8 3.6 37 8-44 58-96 (99)
6 1whw_A Hypothetical protein ri 90.2 0.37 1.3E-05 37.2 5.0 42 7-48 46-89 (99)
7 2jrs_A RNA-binding protein 39; 90.2 0.27 9.4E-06 39.0 4.2 42 8-49 65-108 (108)
8 1x5t_A Splicing factor 3B subu 90.2 0.38 1.3E-05 36.8 5.0 39 7-45 44-84 (96)
9 1jmt_A Splicing factor U2AF 35 90.0 0.24 8.3E-06 39.2 3.8 38 8-45 65-104 (104)
10 2dgp_A Bruno-like 4, RNA bindi 89.9 0.53 1.8E-05 36.8 5.7 39 8-46 52-95 (106)
11 2cqp_A RNA-binding protein 12; 89.7 0.29 9.8E-06 37.8 3.9 40 9-48 55-96 (98)
12 2a3j_A U1 small nuclear ribonu 89.6 0.35 1.2E-05 39.9 4.5 46 8-53 69-116 (127)
13 2fy1_A RNA-binding motif prote 89.5 0.53 1.8E-05 37.8 5.5 38 8-45 45-84 (116)
14 2x1f_A MRNA 3'-END-processing 89.5 0.37 1.3E-05 37.0 4.4 40 8-47 41-82 (96)
15 2dgv_A HnRNP M, heterogeneous 89.5 0.34 1.2E-05 36.8 4.1 40 8-47 45-86 (92)
16 2dit_A HIV TAT specific factor 89.2 0.57 1.9E-05 37.3 5.4 48 7-54 60-109 (112)
17 1x5u_A Splicing factor 3B subu 89.2 0.6 2E-05 36.4 5.5 40 7-46 53-94 (105)
18 4a8x_A RNA-binding protein wit 89.2 0.3 1E-05 36.7 3.6 37 10-46 46-84 (88)
19 1x5s_A Cold-inducible RNA-bind 89.1 0.43 1.5E-05 37.0 4.6 38 8-45 51-90 (102)
20 2mss_A Protein (musashi1); RNA 88.9 0.47 1.6E-05 34.5 4.4 23 7-29 37-59 (75)
21 2cph_A RNA binding motif prote 88.9 0.7 2.4E-05 36.1 5.7 41 7-47 54-97 (107)
22 2fc8_A NCL protein; structure 88.8 0.37 1.3E-05 37.4 3.9 39 8-46 51-91 (102)
23 2dnl_A Cytoplasmic polyadenyla 88.8 0.27 9.4E-06 39.3 3.2 25 8-32 49-73 (114)
24 3s8s_A Histone-lysine N-methyl 88.7 0.32 1.1E-05 38.9 3.5 39 8-46 45-85 (110)
25 3mdf_A Peptidyl-prolyl CIS-tra 88.6 0.34 1.1E-05 36.2 3.5 28 8-35 46-73 (85)
26 2lkz_A RNA-binding protein 5; 88.5 0.29 9.9E-06 38.1 3.1 37 8-44 50-92 (95)
27 2dgs_A DAZ-associated protein 88.4 0.77 2.6E-05 35.4 5.6 40 8-48 49-90 (99)
28 2lxi_A RNA-binding protein 10; 88.4 0.5 1.7E-05 36.2 4.4 37 8-44 41-80 (91)
29 2d9p_A Polyadenylate-binding p 88.2 0.56 1.9E-05 36.5 4.7 38 8-45 52-91 (103)
30 2e5j_A Methenyltetrahydrofolat 88.1 0.74 2.5E-05 35.4 5.3 40 8-47 53-94 (97)
31 3md1_A Nuclear and cytoplasmic 88.1 0.46 1.6E-05 35.2 3.9 38 8-45 40-79 (83)
32 1fxl_A Paraneoplastic encephal 87.9 0.64 2.2E-05 38.9 5.2 61 8-68 41-109 (167)
33 2la6_A RNA-binding protein FUS 87.8 0.47 1.6E-05 36.7 3.9 37 8-44 60-98 (99)
34 3ns6_A Eukaryotic translation 87.7 0.45 1.5E-05 37.1 3.8 37 8-44 51-90 (100)
35 2do4_A Squamous cell carcinoma 87.7 0.48 1.6E-05 36.6 4.0 39 8-46 55-95 (100)
36 2dnh_A Bruno-like 5, RNA bindi 87.6 0.66 2.3E-05 36.1 4.8 38 8-45 53-95 (105)
37 2cpx_A Hypothetical protein FL 87.5 0.92 3.2E-05 35.9 5.7 38 7-44 63-102 (115)
38 2ki2_A SS-DNA binding protein 87.3 0.49 1.7E-05 35.7 3.7 39 8-47 40-80 (90)
39 2fc9_A NCL protein; structure 87.2 0.61 2.1E-05 36.1 4.3 38 7-44 49-88 (101)
40 2krb_A Eukaryotic translation 87.1 0.54 1.8E-05 34.8 3.8 28 8-35 44-71 (81)
41 1wg1_A KIAA1579 protein, homol 87.0 0.25 8.4E-06 37.5 1.8 40 9-48 38-79 (88)
42 3bs9_A Nucleolysin TIA-1 isofo 87.0 0.37 1.3E-05 36.1 2.8 37 8-44 45-83 (87)
43 2e44_A Insulin-like growth fac 86.9 1 3.6E-05 34.3 5.5 39 9-47 52-92 (96)
44 1fj7_A Nucleolin RBD1, protein 86.8 0.89 3.1E-05 35.1 5.1 37 8-45 55-93 (101)
45 1p1t_A Cleavage stimulation fa 86.7 0.58 2E-05 36.4 3.9 40 8-47 47-88 (104)
46 1nu4_A U1A RNA binding domain; 86.7 0.42 1.5E-05 36.6 3.1 42 9-50 49-92 (97)
47 2cq0_A Eukaryotic translation 86.6 0.65 2.2E-05 36.1 4.2 38 8-45 54-93 (103)
48 1wi8_A EIF-4B, eukaryotic tran 86.6 0.85 2.9E-05 35.5 4.9 39 8-47 54-94 (104)
49 2j76_E EIF-4B, EIF4B, eukaryot 86.5 0.89 3.1E-05 35.2 4.9 38 7-45 57-96 (100)
50 2pe8_A Splicing factor 45; RRM 86.5 0.52 1.8E-05 37.4 3.5 38 9-46 54-93 (105)
51 2e5h_A Zinc finger CCHC-type a 86.4 0.58 2E-05 35.6 3.7 37 8-44 55-93 (94)
52 2cpe_A RNA-binding protein EWS 86.3 0.86 2.9E-05 36.0 4.8 37 8-44 62-100 (113)
53 1uaw_A Mouse-musashi-1; RNP-ty 86.2 0.54 1.9E-05 34.2 3.3 36 8-44 39-76 (77)
54 2dnq_A RNA-binding protein 4B; 86.1 1.1 3.6E-05 33.9 5.1 35 11-45 42-78 (90)
55 2kt5_A RNA and export factor-b 86.1 0.7 2.4E-05 37.3 4.2 38 8-45 73-112 (124)
56 2dhg_A TRNA selenocysteine ass 86.0 0.85 2.9E-05 35.4 4.6 37 8-44 48-87 (104)
57 2cqb_A Peptidyl-prolyl CIS-tra 85.8 0.65 2.2E-05 36.0 3.8 38 8-45 51-90 (102)
58 2cpi_A CCR4-NOT transcription 85.8 0.58 2E-05 37.1 3.5 37 9-45 61-99 (111)
59 2div_A TRNA selenocysteine ass 85.7 0.82 2.8E-05 35.1 4.3 38 8-45 49-92 (99)
60 1b7f_A Protein (SXL-lethal pro 85.7 0.96 3.3E-05 38.0 5.1 61 8-68 42-110 (168)
61 2dnm_A SRP46 splicing factor; 85.6 0.74 2.5E-05 35.7 4.0 38 8-45 52-91 (103)
62 2nlw_A Eukaryotic translation 85.5 0.7 2.4E-05 36.2 3.9 40 8-47 58-100 (105)
63 1p27_B RNA-binding protein 8A; 85.5 0.72 2.5E-05 36.0 3.9 37 8-44 62-100 (106)
64 2jvr_A Nucleolar protein 3; RN 85.4 0.73 2.5E-05 37.0 4.0 38 8-45 64-103 (111)
65 1iqt_A AUF1, heterogeneous nuc 85.4 0.64 2.2E-05 33.6 3.4 23 8-30 38-60 (75)
66 2cqg_A TDP-43, TAR DNA-binding 85.2 0.54 1.8E-05 36.6 3.0 39 8-46 54-92 (103)
67 3lqv_A PRE-mRNA branch site pr 85.2 0.83 2.8E-05 36.3 4.2 58 7-66 43-102 (115)
68 2cpj_A Non-POU domain-containi 85.2 0.9 3.1E-05 35.0 4.3 39 9-47 49-89 (99)
69 2cpf_A RNA binding motif prote 85.0 0.68 2.3E-05 35.5 3.5 36 9-44 48-85 (98)
70 2cpz_A CUG triplet repeat RNA- 85.0 0.79 2.7E-05 36.4 4.0 38 8-45 64-103 (115)
71 1x4a_A Splicing factor, argini 84.9 1.2 4E-05 35.0 5.0 37 8-44 58-96 (109)
72 1fjc_A Nucleolin RBD2, protein 84.9 0.52 1.8E-05 36.1 2.8 38 8-45 50-89 (96)
73 1x4h_A RNA-binding protein 28; 84.9 1.1 3.9E-05 35.0 4.9 38 8-45 54-99 (111)
74 2cqi_A Nucleolysin TIAR; RNA r 84.8 1 3.4E-05 35.0 4.5 37 10-46 54-92 (103)
75 3smz_A Protein raver-1, ribonu 84.8 1.1 3.8E-05 41.5 5.6 61 8-68 54-116 (284)
76 2ek1_A RNA-binding protein 12; 84.8 0.69 2.4E-05 35.2 3.4 37 8-44 54-92 (95)
77 2dgo_A Cytotoxic granule-assoc 84.6 0.88 3E-05 36.1 4.1 37 8-44 54-92 (115)
78 2cqc_A Arginine/serine-rich sp 84.6 0.56 1.9E-05 35.7 2.8 37 8-44 54-92 (95)
79 2kvi_A Nuclear polyadenylated 84.6 0.8 2.7E-05 35.2 3.7 35 11-45 45-81 (96)
80 1x5p_A Negative elongation fac 84.5 1 3.5E-05 34.5 4.4 37 9-45 47-85 (97)
81 1oo0_B CG8781-PA, drosophila Y 84.2 0.96 3.3E-05 35.5 4.2 37 8-44 65-103 (110)
82 3ex7_B RNA-binding protein 8A; 84.0 1.1 3.9E-05 36.1 4.6 38 7-44 60-99 (126)
83 1wf1_A RNA-binding protein RAL 84.0 0.74 2.5E-05 36.3 3.4 38 10-47 61-100 (110)
84 2cq3_A RNA-binding protein 9; 83.9 1.6 5.3E-05 33.8 5.2 37 10-46 54-92 (103)
85 1why_A Hypothetical protein ri 83.9 1.4 4.6E-05 33.8 4.8 34 11-44 53-90 (97)
86 2dis_A Unnamed protein product 83.8 1.3 4.4E-05 34.7 4.7 37 8-44 49-89 (109)
87 3v4m_A Splicing factor U2AF 65 83.7 0.73 2.5E-05 36.5 3.2 37 9-45 57-95 (105)
88 3ucg_A Polyadenylate-binding p 83.7 0.9 3.1E-05 34.0 3.6 37 7-44 44-82 (89)
89 2kxn_B Transformer-2 protein h 83.5 1.6 5.4E-05 35.7 5.3 37 8-44 85-123 (129)
90 2dgw_A Probable RNA-binding pr 83.4 0.7 2.4E-05 35.0 2.9 36 8-44 47-84 (91)
91 2dgx_A KIAA0430 protein; RRM d 83.4 0.95 3.2E-05 34.8 3.7 34 11-44 52-87 (96)
92 1sjr_A Polypyrimidine tract-bi 83.2 1.6 5.3E-05 37.8 5.3 38 8-45 81-122 (164)
93 3ulh_A THO complex subunit 4; 83.2 0.77 2.6E-05 35.9 3.1 37 8-44 67-105 (107)
94 2cqd_A RNA-binding region cont 83.2 1 3.6E-05 35.7 4.0 37 8-44 56-93 (116)
95 4f25_A Polyadenylate-binding p 83.2 1.1 3.8E-05 35.8 4.1 35 10-44 44-80 (115)
96 2ywk_A Putative RNA-binding pr 83.1 0.71 2.4E-05 35.1 2.8 37 8-44 54-92 (95)
97 1whx_A Hypothetical protein ri 82.9 1 3.6E-05 35.7 3.9 38 9-46 44-83 (111)
98 1h2v_Z 20 kDa nuclear CAP bind 82.8 0.89 3.1E-05 38.3 3.6 39 8-46 78-118 (156)
99 2dng_A Eukaryotic translation 82.7 1.1 3.6E-05 34.8 3.8 38 8-46 53-92 (103)
100 2dgu_A Heterogeneous nuclear r 82.4 1.1 3.8E-05 34.8 3.8 35 11-45 45-81 (103)
101 2cqh_A IGF-II mRNA-binding pro 82.2 0.94 3.2E-05 34.4 3.2 36 10-45 43-81 (93)
102 1wg5_A Heterogeneous nuclear r 81.6 1.5 5E-05 34.3 4.2 45 7-53 53-99 (104)
103 2hvz_A Splicing factor, argini 81.6 1.5 5.1E-05 33.8 4.2 35 10-44 36-72 (101)
104 1x4g_A Nucleolysin TIAR; struc 81.5 1.6 5.5E-05 34.2 4.5 36 11-46 61-98 (109)
105 2la4_A Nuclear and cytoplasmic 81.3 1.3 4.4E-05 34.2 3.8 36 9-44 61-98 (101)
106 1x5o_A RNA binding motif, sing 81.2 1.8 6.1E-05 34.2 4.7 27 8-34 63-89 (114)
107 3nmr_A Cugbp ELAV-like family 81.1 1.7 5.6E-05 36.7 4.8 60 9-68 45-116 (175)
108 1x4e_A RNA binding motif, sing 81.1 1.2 4.1E-05 33.0 3.4 27 8-34 44-70 (85)
109 2lmi_A GRSF-1, G-rich sequence 81.1 1.5 5.3E-05 34.3 4.2 25 8-33 52-76 (107)
110 2bz2_A Negative elongation fac 80.7 2.3 7.8E-05 34.4 5.2 37 9-45 71-109 (121)
111 2lea_A Serine/arginine-rich sp 80.6 1.9 6.4E-05 35.6 4.7 38 7-44 85-124 (135)
112 2err_A Ataxin-2-binding protei 80.2 1.2 4E-05 35.2 3.2 36 9-44 67-104 (109)
113 2khc_A Testis-specific RNP-typ 80.1 1.2 4.1E-05 35.5 3.3 27 8-34 79-105 (118)
114 2xnq_A Nuclear polyadenylated 79.9 1.9 6.4E-05 33.2 4.3 34 11-44 57-92 (97)
115 2cpd_A Apobec-1 stimulating pr 79.9 1.7 5.8E-05 33.4 4.0 35 10-44 50-86 (99)
116 3beg_B Splicing factor, argini 79.6 2 6.7E-05 34.3 4.4 23 12-34 52-74 (115)
117 1wf0_A TDP-43, TAR DNA-binding 79.5 0.7 2.4E-05 34.8 1.6 38 9-46 40-77 (88)
118 2dnp_A RNA-binding protein 14; 79.3 2 6.8E-05 32.3 4.2 35 11-45 43-79 (90)
119 2do0_A HnRNP M, heterogeneous 79.3 1.8 6E-05 34.1 4.0 27 8-34 53-79 (114)
120 2ytc_A PRE-mRNA-splicing facto 79.2 1.6 5.6E-05 32.2 3.6 22 10-31 47-68 (85)
121 1x4c_A Splicing factor, argini 78.9 1.3 4.4E-05 34.8 3.1 34 12-45 51-91 (108)
122 2e5g_A U6 snRNA-specific termi 78.9 1.8 6.2E-05 32.9 3.9 35 13-48 47-83 (94)
123 1x4f_A Matrin 3; structural ge 78.7 1.8 6.2E-05 34.8 3.9 42 10-51 61-106 (112)
124 2wbr_A GW182, gawky, LD47780P; 78.6 1.7 5.7E-05 33.6 3.5 35 10-44 42-78 (89)
125 2kn4_A Immunoglobulin G-bindin 78.5 2 6.7E-05 36.1 4.3 38 7-44 108-147 (158)
126 3sde_A Paraspeckle component 1 78.5 2.6 8.8E-05 38.7 5.5 60 9-68 56-117 (261)
127 3md3_A Nuclear and cytoplasmic 78.5 3.4 0.00012 34.2 5.8 60 8-67 38-107 (166)
128 2qfj_A FBP-interacting repress 78.1 4.3 0.00015 35.4 6.7 62 7-68 66-146 (216)
129 3s7r_A Heterogeneous nuclear r 78.0 0.92 3.2E-05 33.9 1.8 23 8-30 50-72 (87)
130 1wez_A HnRNP H', FTP-3, hetero 77.9 1.4 4.9E-05 34.4 3.0 37 8-45 52-90 (102)
131 1u6f_A Tcubp1, RNA-binding pro 77.7 1.8 6E-05 35.6 3.7 37 8-44 81-119 (139)
132 2jwn_A Embryonic polyadenylate 77.6 2.2 7.7E-05 34.1 4.2 38 7-45 74-113 (124)
133 2jvo_A Nucleolar protein 3; nu 77.5 2.3 7.9E-05 33.5 4.2 34 11-44 65-100 (108)
134 1x4b_A Heterogeneous nuclear r 76.8 2.2 7.5E-05 33.8 3.9 36 8-44 66-103 (116)
135 2dgt_A RNA-binding protein 30; 76.4 2.2 7.5E-05 32.2 3.7 34 11-44 44-79 (92)
136 3egn_A RNA-binding protein 40; 76.2 1.7 5.9E-05 35.9 3.2 38 7-44 88-127 (143)
137 2m2b_A RNA-binding protein 10; 75.7 1.7 5.7E-05 35.5 3.0 36 8-44 64-105 (131)
138 3n9u_C Cleavage and polyadenyl 75.7 2 6.7E-05 36.5 3.5 37 8-44 96-134 (156)
139 2e5i_A Heterogeneous nuclear r 75.6 4 0.00014 33.3 5.2 38 11-48 61-103 (124)
140 3s6e_A RNA-binding protein 39; 75.5 1.8 6.1E-05 34.8 3.0 36 10-45 54-91 (114)
141 1wel_A RNA-binding protein 12; 75.5 1.4 4.7E-05 35.6 2.4 36 8-44 64-101 (124)
142 1fje_B Nucleolin RBD12, protei 75.1 3.1 0.00011 35.1 4.7 62 7-69 50-121 (175)
143 2dh8_A DAZ-associated protein 75.0 1.6 5.5E-05 33.9 2.6 35 9-44 56-92 (105)
144 3d2w_A TAR DNA-binding protein 74.3 1.5 5E-05 33.3 2.1 36 9-44 46-81 (89)
145 2cq2_A Hypothetical protein LO 74.3 2.4 8.3E-05 34.2 3.5 24 11-34 63-86 (114)
146 1s79_A Lupus LA protein; RRM, 73.9 2.3 8E-05 33.3 3.3 22 8-29 49-70 (103)
147 1wex_A Hypothetical protein (r 73.8 2.9 9.9E-05 32.9 3.8 35 11-45 51-89 (104)
148 3ue2_A Poly(U)-binding-splicin 73.6 1.5 5E-05 35.6 2.0 36 11-46 71-108 (118)
149 2dnn_A RNA-binding protein 12; 73.5 2.6 8.8E-05 33.5 3.5 22 8-29 53-74 (109)
150 1sjq_A Polypyrimidine tract-bi 73.4 3.1 0.00011 32.9 3.9 35 11-45 52-90 (105)
151 2hgl_A HNRPF protein, heteroge 73.2 1.7 5.8E-05 36.1 2.4 36 8-44 85-122 (136)
152 2cpy_A RNA-binding protein 12; 72.7 2.3 7.7E-05 33.7 3.0 23 8-30 54-76 (114)
153 1x4d_A Matrin 3; structural ge 72.5 2.3 7.8E-05 33.5 2.9 36 11-46 52-91 (102)
154 2hzc_A Splicing factor U2AF 65 72.2 3.1 0.00011 30.7 3.5 25 9-34 51-75 (87)
155 2g4b_A Splicing factor U2AF 65 72.1 6.6 0.00023 32.7 6.0 60 8-68 48-115 (172)
156 2rs2_A Musashi-1, RNA-binding 71.2 3.1 0.00011 32.7 3.5 37 8-44 64-101 (109)
157 3r27_A HnRNP L, heterogeneous 71.0 2.9 9.9E-05 32.8 3.1 36 9-44 55-94 (100)
158 2hgn_A Heterogeneous nuclear r 70.7 3 0.0001 34.8 3.3 39 8-47 83-123 (139)
159 2cjk_A Nuclear polyadenylated 70.2 1.7 5.7E-05 36.4 1.7 62 7-68 41-108 (167)
160 3tyt_A Heterogeneous nuclear r 69.7 6.1 0.00021 34.9 5.5 24 10-33 41-64 (205)
161 1rk8_A CG8781-PA, CG8781-PA pr 69.0 3.3 0.00011 35.2 3.3 37 8-44 111-149 (165)
162 2hgm_A HNRPF protein, heteroge 68.9 2.5 8.7E-05 34.6 2.5 23 8-30 81-103 (126)
163 2lcw_A RNA-binding protein FUS 71.4 1 3.6E-05 35.8 0.0 38 8-45 54-93 (116)
164 2db1_A Heterogeneous nuclear r 67.9 2.4 8E-05 34.0 2.1 24 8-32 58-81 (118)
165 2ad9_A Polypyrimidine tract-bi 67.8 2.7 9.4E-05 34.1 2.4 35 11-45 67-105 (119)
166 2cq1_A PTB-like protein L; RRM 67.8 3.6 0.00012 32.1 3.1 35 11-45 51-89 (101)
167 4f02_A Polyadenylate-binding p 67.7 5.5 0.00019 35.1 4.7 61 8-68 54-124 (213)
168 2dha_A FLJ20171 protein; RRM d 66.4 2.3 7.8E-05 34.7 1.7 23 8-30 65-87 (123)
169 1qm9_A Polypyrimidine tract-bi 65.5 7.8 0.00027 33.4 5.2 24 10-33 40-63 (198)
170 3pgw_A U1-A; protein-RNA compl 64.3 12 0.00042 34.2 6.6 27 7-33 48-74 (282)
171 2adc_A Polypyrimidine tract-bi 64.2 11 0.00038 33.5 6.1 24 10-33 71-94 (229)
172 1l3k_A Heterogeneous nuclear r 63.4 8.2 0.00028 32.9 4.9 61 8-68 52-125 (196)
173 2yh0_A Splicing factor U2AF 65 63.2 6.6 0.00023 33.6 4.3 22 8-29 48-69 (198)
174 3smz_A Protein raver-1, ribonu 63.0 5.4 0.00018 36.7 3.8 41 8-48 223-265 (284)
175 2f3j_A RNA and export factor b 63.0 7.2 0.00024 33.7 4.4 27 8-34 126-152 (177)
176 2cq4_A RNA binding motif prote 62.6 4 0.00014 32.0 2.5 25 8-33 64-88 (114)
177 3q2s_C Cleavage and polyadenyl 62.5 4 0.00014 36.9 2.7 38 8-45 109-148 (229)
178 3zzy_A Polypyrimidine tract-bi 61.8 7.2 0.00025 32.1 3.9 35 13-47 68-106 (130)
179 3sde_A Paraspeckle component 1 61.7 5.7 0.0002 36.3 3.7 37 8-44 134-176 (261)
180 2qfj_A FBP-interacting repress 60.9 5.7 0.0002 34.6 3.5 28 8-35 164-191 (216)
181 4f02_A Polyadenylate-binding p 60.4 5 0.00017 35.4 3.0 35 10-44 142-178 (213)
182 2i2y_A Fusion protein consists 58.6 9.2 0.00032 31.6 4.2 28 8-35 107-134 (150)
183 2dnr_A Synaptojanin-1; RRM dom 57.6 6.7 0.00023 30.2 2.8 33 11-44 49-83 (91)
184 2xs2_A Deleted in azoospermia- 56.4 2.2 7.5E-05 32.8 -0.1 22 8-29 47-68 (102)
185 1l3k_A Heterogeneous nuclear r 56.1 7.6 0.00026 33.2 3.4 39 8-47 143-183 (196)
186 2kn4_A Immunoglobulin G-bindin 54.1 19 0.00065 29.7 5.5 62 8-69 10-92 (158)
187 3pgw_S U1-70K; protein-RNA com 53.9 12 0.0004 37.4 4.7 46 7-52 140-187 (437)
188 3u1l_A PRE-mRNA-splicing facto 52.6 9.9 0.00034 34.7 3.6 27 10-36 178-204 (240)
189 2ghp_A U4/U6 snRNA-associated 46.4 19 0.00066 33.0 4.7 58 10-69 80-139 (292)
190 2ghp_A U4/U6 snRNA-associated 43.9 19 0.00064 33.0 4.2 37 8-44 156-194 (292)
191 3tht_A Alkylated DNA repair pr 43.3 16 0.00055 35.2 3.6 25 10-34 55-79 (345)
192 2dhx_A Poly (ADP-ribose) polym 42.2 44 0.0015 26.3 5.3 45 12-56 48-95 (104)
193 2rdd_B UPF0092 membrane protei 32.8 23 0.0008 22.2 1.9 18 269-286 4-21 (37)
194 1ufw_A Synaptojanin 2; RNP dom 31.5 22 0.00077 27.5 2.0 23 11-34 58-80 (95)
195 2ldf_A Sarafotoxin-M, SRTX-M; 23.6 23 0.00078 20.3 0.5 7 49-55 18-24 (26)
196 2lde_A Sarafotoxin-I3; endothe 22.9 23 0.00078 20.4 0.4 8 48-55 17-24 (26)
197 1edn_A Endothelin-1; signal po 22.3 21 0.00071 20.5 0.2 8 48-55 17-24 (26)
198 1srb_A Sarafotoxins precursor; 20.5 25 0.00085 20.2 0.3 8 48-55 17-24 (26)
No 1
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.87 E-value=0.035 Score=43.65 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=36.0
Q ss_pred ceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCCCeec
Q 014468 12 AAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQDVHW 52 (424)
Q Consensus 12 ~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW 52 (424)
|.|||+|+++++|+.|.+.+..... ..++++.|+..+|++=
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELCE 89 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcceeE
Confidence 8999999999999999998887654 5789999999999863
No 2
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.26 E-value=0.22 Score=38.15 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|.+..
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 4567899999999999999999776543 3457777775544
No 3
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=91.89 E-value=0.11 Score=39.81 Aligned_cols=41 Identities=12% Similarity=0.086 Sum_probs=28.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
+++.|.|||+|++.++|..|.+.+.... ...++|+.|..|.
T Consensus 42 g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 42 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp CCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred CccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 4557899999999999999998877643 3456777665443
No 4
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.37 E-value=0.31 Score=38.44 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=29.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP 45 (424)
+++.+.|||+|++.++|..|.+.........++|+.|-
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~~~g~~l~V~~a~ 88 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVGLVDNPLKISWLE 88 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCBCSSSBCEEECSS
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCCCCCCeEEEEEcc
Confidence 46789999999999999999988554444556677663
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=91.08 E-value=0.16 Score=39.80 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.|.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 58 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 58 GHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4456799999999999999998876543 235667666
No 6
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.24 E-value=0.37 Score=37.17 Aligned_cols=42 Identities=19% Similarity=0.029 Sum_probs=30.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
..++.+.|||+|++.++|..|.+.+.... ...++|+.|-.++
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 34567899999999999999998776542 3456676664443
No 7
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=90.18 E-value=0.27 Score=39.03 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=32.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQD 49 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~D 49 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|-+..|
T Consensus 65 g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~d 108 (108)
T 2jrs_A 65 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTD 108 (108)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCCC
Confidence 3457899999999999999998876653 34677887766554
No 8
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.17 E-value=0.38 Score=36.84 Aligned_cols=39 Identities=21% Similarity=0.203 Sum_probs=29.4
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
..++.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 44 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 44 TGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp TCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 34567899999999999999999776553 3356666663
No 9
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=90.02 E-value=0.24 Score=39.24 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=29.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+++.|.|||+|++..+|..|.+.+.... ....+|+.+|
T Consensus 65 ~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 65 DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 3568999999999999999999887653 2345566665
No 10
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=89.85 E-value=0.53 Score=36.75 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC-----CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN-----PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~~~v~~AP~ 46 (424)
.+..+.|||+|.+.++|..|.+.+.... ...++|+.|-.
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 95 (106)
T 2dgp_A 52 GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADS 95 (106)
T ss_dssp CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCc
Confidence 4567899999999999999998776543 35677777643
No 11
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.70 E-value=0.29 Score=37.78 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=30.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
++.+.|||+|++.++|..|.+.+.... ...++|+.|-.|.
T Consensus 55 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (98)
T 2cqp_A 55 MPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS 96 (98)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred CeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence 456899999999999999998877543 3457777776553
No 12
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=89.55 E-value=0.35 Score=39.89 Aligned_cols=46 Identities=17% Similarity=0.183 Sum_probs=36.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWP 53 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~ 53 (424)
.+..|.|||+|.+.++|..|.+.+.... ...++|+.|-.++|...+
T Consensus 69 ~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 69 DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVAE 116 (127)
T ss_dssp CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHHC
T ss_pred CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhccc
Confidence 4667999999999999999998887654 346778888777776654
No 13
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=89.53 E-value=0.53 Score=37.82 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=28.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
++..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 45 g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 45 SKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp TTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4567999999999999999999876543 2345566553
No 14
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=89.53 E-value=0.37 Score=37.04 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=30.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
++..+.|||+|++.++|..|.+.+.... ...++|+.|-++
T Consensus 41 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 41 GRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 4568999999999999999998876542 345667766433
No 15
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=89.46 E-value=0.34 Score=36.76 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=29.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|-.+
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3457899999999999999999876543 234566665433
No 16
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.20 E-value=0.57 Score=37.31 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=35.9
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPF 54 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~N 54 (424)
+.++.|.|||+|++..+|..|.+.+.... ...++|+.|.+..|.-++.
T Consensus 60 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 60 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp TTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCCSSCCC
T ss_pred cCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCcccCC
Confidence 34568999999999999999999887653 3457788876666654443
No 17
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.20 E-value=0.6 Score=36.38 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=30.3
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
..++.+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34567899999999999999999877543 34567776643
No 18
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=89.19 E-value=0.3 Score=36.65 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
..+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 68899999999999999999876653 23456665533
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.13 E-value=0.43 Score=37.02 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=28.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 51 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3467899999999999999998876543 3456666653
No 20
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=88.92 E-value=0.47 Score=34.46 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHH
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALH 29 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q 29 (424)
.+++.+.|||+|++.++|..|.+
T Consensus 37 ~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 37 TNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp STTSCBEEEEECSCHHHHHHHHS
T ss_pred CCCcCcEEEEEECCHHHHHHHHH
Confidence 34567899999999999999886
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.87 E-value=0.7 Score=36.05 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=30.4
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhc-cCCC--CCcceeccCCCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQ-QGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~-~~~~--~~~~~v~~AP~P 47 (424)
..+..+.|||+|.+.++|..|.+.+ .... ...++|+.|-..
T Consensus 54 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 54 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSE 97 (107)
T ss_dssp SCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCC
T ss_pred CCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCC
Confidence 3456889999999999999999887 4432 345677766433
No 22
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.81 E-value=0.37 Score=37.44 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=29.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 51 GSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 3456899999999999999998776543 23566766643
No 23
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.77 E-value=0.27 Score=39.32 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=21.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcc
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQ 32 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~ 32 (424)
+++.+.|||+|++.++|+.|.+.++
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCcccEEEEEECCHHHHHHHHHhhh
Confidence 4668999999999999999998763
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=88.66 E-value=0.32 Score=38.93 Aligned_cols=39 Identities=18% Similarity=0.036 Sum_probs=30.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
+++.+.|||+|++.++|+.|.+.+.... ...++|+.|+.
T Consensus 45 g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 45 RKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 4567899999999999999999887653 34567777753
No 25
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=88.64 E-value=0.34 Score=36.15 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=23.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN 35 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~ 35 (424)
+++.+.|||+|++.++|..|.+.+....
T Consensus 46 ~~~~g~afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 46 EKHRGFAFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CccccEEEEEECCHHHHHHHHHHhCCCE
Confidence 4467899999999999999998776553
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=88.51 E-value=0.29 Score=38.14 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=28.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC------CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN------PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~------~~~~~v~~A 44 (424)
+++.|.|||+|.+.++|..|.+.+.... ...+.|+.|
T Consensus 50 g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~A 92 (95)
T 2lkz_A 50 QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFA 92 (95)
T ss_dssp SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEEC
T ss_pred CCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEc
Confidence 4567899999999999999999887643 234556555
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.43 E-value=0.77 Score=35.36 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=29.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
+++.+.|||+|++.++|..|.+ +.... ...++|+.|-.++
T Consensus 49 ~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 49 QRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred CCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 4567899999999999999998 54332 3456677664443
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=88.37 E-value=0.5 Score=36.17 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=27.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC---CCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV---NPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~---~~~~~~v~~A 44 (424)
+++.|.|||+|.+.++|..|.+...+. +...++|+.|
T Consensus 41 ~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 41 GQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 456789999999999999998765432 2345667655
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.16 E-value=0.56 Score=36.45 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 52 GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3567899999999999999999776543 3456666653
No 30
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.11 E-value=0.74 Score=35.38 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=30.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
.+..+.|||+|++..+|..|.+.+.... ...++|+.|-++
T Consensus 53 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 53 QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4667999999999999999998877653 345777766443
No 31
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=88.07 E-value=0.46 Score=35.17 Aligned_cols=38 Identities=29% Similarity=0.285 Sum_probs=28.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 40 ~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 40 GSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 4557899999999999999999876553 2346666663
No 32
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=87.88 E-value=0.64 Score=38.93 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=41.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC------CCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP------QDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P------~DIiW~NL~~~~~~r~~R~~~ 68 (424)
+++.+.|||+|.+.++|..|.+.+.... ...++++.|... ..+.=.||..+..+..++..+
T Consensus 41 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 109 (167)
T 1fxl_A 41 GQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLF 109 (167)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHH
T ss_pred CcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHH
Confidence 3456899999999999999998776543 234555555422 337777887766665555543
No 33
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=87.78 E-value=0.47 Score=36.68 Aligned_cols=37 Identities=27% Similarity=0.197 Sum_probs=27.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
++..|.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 60 g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 60 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp CSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 3457899999999999999998776543 234555544
No 34
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=87.73 E-value=0.45 Score=37.08 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=28.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC---CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP---TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~---~~~~v~~A 44 (424)
+++.|.|||+|.+..+|..|.+.+....- ..++|+.|
T Consensus 51 g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a 90 (100)
T 3ns6_A 51 GKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTM 90 (100)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEES
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEEC
Confidence 45679999999999999999998775532 34666665
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.73 E-value=0.48 Score=36.63 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=29.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 55 GKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 3456899999999999999998776532 34566776643
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=87.61 E-value=0.66 Score=36.13 Aligned_cols=38 Identities=34% Similarity=0.502 Sum_probs=29.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--C---CcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--P---TEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~---~~~~v~~AP 45 (424)
++..+.|||+|++.++|..|.+.+.... . ..++|+.|-
T Consensus 53 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 53 GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 3446899999999999999998876543 2 457777663
No 37
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.54 E-value=0.92 Score=35.91 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=29.5
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.++..+.|||+|++..+|..|.+.+.... ...++|+.|
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 45677999999999999999999876543 345666665
No 38
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=87.32 E-value=0.49 Score=35.73 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=27.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+++.+.|||+|++.+ |..|.+.+.... ...++|+.|..+
T Consensus 40 ~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 40 KKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred CCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 456889999999999 999998776553 345667766443
No 39
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.24 E-value=0.61 Score=36.09 Aligned_cols=38 Identities=26% Similarity=0.162 Sum_probs=28.6
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
..+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 34567899999999999999999776542 334566655
No 40
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=87.09 E-value=0.54 Score=34.84 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN 35 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~ 35 (424)
+++.|.|||+|++..+|..|.+.+....
T Consensus 44 g~~~g~afV~f~~~~~A~~Ai~~lng~~ 71 (81)
T 2krb_A 44 GKTKGYIFLEYASPAHAVDAVKNADGYK 71 (81)
T ss_dssp TBCCCEEEEEESSHHHHHHHHTTSSSCC
T ss_pred CcEeEEEEEEECCHHHHHHHHHHhcCcc
Confidence 4567999999999999999998776543
No 41
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=87.01 E-value=0.25 Score=37.50 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=31.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
++.+.|||+|++.++|..|.+.+.... ...++|+.||...
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 567899999999999999999876543 3457788887543
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=87.01 E-value=0.37 Score=36.08 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=27.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 45 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 45 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4457899999999999999999876543 234555544
No 43
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.93 E-value=1 Score=34.30 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=29.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+.++.|||+|.+..+|..|.+.+.... ...++|+.|.+.
T Consensus 52 ~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 52 SETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp SSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 345559999999999999998776543 356778877654
No 44
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.82 E-value=0.89 Score=35.10 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=28.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+++.+.|||+|++.++|..|.+ +.... ...++|+.|-
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4567899999999999999998 65443 3456676663
No 45
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.73 E-value=0.58 Score=36.36 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=30.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+++.+.|||+|++..+|..|.+.+.... ...++|+.|-.+
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 47 GKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp TEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 3457899999999999999998876543 345677766543
No 46
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=86.71 E-value=0.42 Score=36.62 Aligned_cols=42 Identities=29% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCe
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDV 50 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DI 50 (424)
+..+.|||+|++.++|..|.+.+.... ...++|+.|-.+.+.
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 49 KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDI 92 (97)
T ss_dssp HHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTH
T ss_pred CcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCcc
Confidence 446899999999999999999876643 345677777655543
No 47
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.64 E-value=0.65 Score=36.08 Aligned_cols=38 Identities=32% Similarity=0.286 Sum_probs=28.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 54 GQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 3456799999999999999999876543 2345566553
No 48
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.58 E-value=0.85 Score=35.50 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=28.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
.+..+.|||+|++.++|..|. .+.... ...++|+.|-++
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 94 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA 94 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence 456789999999999999999 655442 335667766443
No 49
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=86.52 E-value=0.89 Score=35.21 Aligned_cols=38 Identities=11% Similarity=0.017 Sum_probs=27.9
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.++..|.|||+|++.++|..|. .+.... ...++|+.|-
T Consensus 57 ~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred CCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 4556899999999999999999 555443 2345666663
No 50
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=86.47 E-value=0.52 Score=37.39 Aligned_cols=38 Identities=16% Similarity=-0.013 Sum_probs=30.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
++.|.|||+|++..+|..|.+.+.... ...++++.|++
T Consensus 54 ~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 54 DEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp TTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 557899999999999999999987653 34566777753
No 51
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.36 E-value=0.58 Score=35.61 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=26.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 55 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 55 RKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 4567899999999999999998776543 233444443
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.33 E-value=0.86 Score=36.03 Aligned_cols=37 Identities=24% Similarity=0.219 Sum_probs=27.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 62 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (113)
T 2cpe_A 62 GKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 100 (113)
T ss_dssp CSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECS
T ss_pred CCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEEC
Confidence 4557899999999999999998776543 234556655
No 53
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.17 E-value=0.54 Score=34.19 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.|.|||+|++.++|..|.+... .. ...++|+.|
T Consensus 39 ~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 39 KRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp SSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4567899999999999999998766 32 234555544
No 54
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.12 E-value=1.1 Score=33.88 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=26.8
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4799999999999999998776542 3456666653
No 55
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=86.08 E-value=0.7 Score=37.34 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=28.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
++..+.|||+|++.++|..|.+.+.... ...++|+.|.
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 4567899999999999999998766532 3456666554
No 56
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.00 E-value=0.85 Score=35.39 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=28.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC---CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN---PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~---~~~~~v~~A 44 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 48 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 48 GVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 3457899999999999999999776543 234566655
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.80 E-value=0.65 Score=35.95 Aligned_cols=38 Identities=24% Similarity=0.139 Sum_probs=28.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 51 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 51 EKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 4568899999999999999998765432 2345566553
No 58
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.77 E-value=0.58 Score=37.13 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=27.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
++.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 61 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~ 99 (111)
T 2cpi_A 61 GPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGT 99 (111)
T ss_dssp CCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCC
T ss_pred CCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecc
Confidence 345899999999999999999876543 3356666653
No 59
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.69 E-value=0.82 Score=35.12 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=27.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCc----ceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTE----WVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~----~~v~~AP 45 (424)
+++.+.|||+|++.++|..|.+.+.... ... ++++.|-
T Consensus 49 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~ 92 (99)
T 2div_A 49 GIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYAT 92 (99)
T ss_dssp CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETT
T ss_pred CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecC
Confidence 3456899999999999999999776532 122 6666553
No 60
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=85.67 E-value=0.96 Score=37.96 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=41.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC------CCCCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
+++.+.|||+|++.++|..|.+.+.... ...++++.|. ...-|.-.||.....+..++..+
T Consensus 42 ~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f 110 (168)
T 1b7f_A 42 GYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIF 110 (168)
T ss_dssp TEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHH
T ss_pred CccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhh
Confidence 3456899999999999999998766542 2334455443 33457788888776666666544
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.56 E-value=0.74 Score=35.74 Aligned_cols=38 Identities=26% Similarity=0.199 Sum_probs=28.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 45 (424)
.+..+.|||+|++.++|..|.+.+....- ..++|+.|-
T Consensus 52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 45678999999999999999997765432 345666553
No 62
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=85.54 E-value=0.7 Score=36.24 Aligned_cols=40 Identities=18% Similarity=0.157 Sum_probs=30.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CC-cceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PT-EWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~-~~~v~~AP~P 47 (424)
+++.|.|||+|.+..+|..|.+.+.... .. .++|+.|-+-
T Consensus 58 g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 58 GKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp TBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 4567999999999999999999876542 33 5778777543
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=85.46 E-value=0.72 Score=35.96 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 62 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 62 GYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp SSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4457899999999999999998776543 344566554
No 64
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=85.45 E-value=0.73 Score=36.97 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=29.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+++.|.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4578999999999999999998876543 3456676663
No 65
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=85.41 E-value=0.64 Score=33.64 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHh
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHI 30 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~ 30 (424)
+++.+.|||+|++.++|..|.+.
T Consensus 38 ~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 38 NKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp SSSCCCEEEECSSSHHHHHHHTT
T ss_pred CCcCCEEEEEECCHHHHHHHHHh
Confidence 55689999999999999999875
No 66
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.24 E-value=0.54 Score=36.57 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=27.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~ 46 (424)
.++.+.|||+|++..+|..|.+..+.-+...++|+.|-.
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 54 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCT
T ss_pred CCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCC
Confidence 445689999999999999999843222334566666643
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=85.23 E-value=0.83 Score=36.25 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=38.1
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHH
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICK 66 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~ 66 (424)
+.+..+.|||+|.+..+|..|.+.+.... ...++|+.|-.+++- +|+.....+..++.
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~--~~~~~~~~~~~l~~ 102 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF--QKMDTKKKEEQLKL 102 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT--TTSCHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh--hhhhHhHhHHHHHH
Confidence 34557899999999999999999876653 345667766433322 55554444444443
No 68
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.19 E-value=0.9 Score=34.98 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+..+.|||+|++.++|..|.+.+.... ...++|+.|-.+
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 346899999999999999998877653 345677777443
No 69
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.98 E-value=0.68 Score=35.53 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=26.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 48 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (98)
T 2cpf_A 48 LSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRIS 85 (98)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECS
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999876543 234555544
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=84.96 E-value=0.79 Score=36.40 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 3456799999999999999998876543 2345666553
No 71
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.95 E-value=1.2 Score=35.00 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=27.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 58 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 58 RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 3457899999999999999998776543 234556655
No 72
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=84.94 E-value=0.52 Score=36.06 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+++.+.|||+|++..+|..|.+.+.... ...++|+.|-
T Consensus 50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4457899999999999999999776432 3456777763
No 73
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.92 E-value=1.1 Score=35.05 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=28.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcc------CC--CCCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQ------GV--NPTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~------~~--~~~~~~v~~AP 45 (424)
+++.+.|||+|.+.++|..|.+.+. .. +...++|+.|-
T Consensus 54 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 54 EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 99 (111)
T ss_dssp CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCC
T ss_pred CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECC
Confidence 4568899999999999999998876 32 23456666663
No 74
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.83 E-value=1 Score=34.96 Aligned_cols=37 Identities=27% Similarity=0.226 Sum_probs=27.9
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
..+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 46899999999999999998776542 34566766643
No 75
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=84.76 E-value=1.1 Score=41.47 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=47.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
.+..|.|||+|.+.++|..|.+.+.... ...+.++.+|...-|.=.||..+..+..++..+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v~nlp~~~t~~~l~~~f 116 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELV 116 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEEESCCTTCCHHHHHHHH
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEEcCCCCcCCHHHHHHHH
Confidence 4567899999999999999998776543 345778888887778889998877676666544
No 76
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=84.76 E-value=0.69 Score=35.23 Aligned_cols=37 Identities=22% Similarity=0.154 Sum_probs=26.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 54 g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 54 GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3456899999999999999998776543 234455544
No 77
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=84.65 E-value=0.88 Score=36.07 Aligned_cols=37 Identities=30% Similarity=0.310 Sum_probs=27.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 54 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 54 GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4457899999999999999998876542 234455544
No 78
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.63 E-value=0.56 Score=35.69 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=26.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 54 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 34568999999999999999998765432 33455544
No 79
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=84.62 E-value=0.8 Score=35.17 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=27.0
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|.
T Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 45 NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 5899999999999999999876543 3456666653
No 80
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.49 E-value=1 Score=34.52 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=28.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+..+.|||+|++..+|..|.+.+.... ...++|+.|-
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 567899999999999999998776542 3346666663
No 81
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=84.24 E-value=0.96 Score=35.54 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++..+|..|.+.+.... ...++|+.|
T Consensus 65 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 65 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp SSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4557999999999999999998776543 234555544
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=84.04 E-value=1.1 Score=36.05 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=28.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
..+..+.|||+|++..+|..|.+.+....- ..+.|+.|
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 445588999999999999999988765432 34556655
No 83
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=84.01 E-value=0.74 Score=36.33 Aligned_cols=38 Identities=21% Similarity=0.178 Sum_probs=28.5
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+.+.|||+|.+.++|..|.+.+.... ...++|+.|-+|
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 46899999999999999998776543 345667766433
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.87 E-value=1.6 Score=33.80 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=27.9
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
+.+.|||+|++.++|..|.+.+.... ...++|+.|-.
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999998776542 33466666543
No 85
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=83.85 E-value=1.4 Score=33.78 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.0
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC----CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN----PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~A 44 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 5799999999999999999776542 345677766
No 86
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.77 E-value=1.3 Score=34.66 Aligned_cols=37 Identities=24% Similarity=0.179 Sum_probs=27.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcc--CC--CCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQ--GV--NPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~--~~--~~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+.+. .. +...++|+.|
T Consensus 49 g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a 89 (109)
T 2dis_A 49 MKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA 89 (109)
T ss_dssp TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred CCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence 3568899999999999999999875 22 2345666655
No 87
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=83.73 E-value=0.73 Score=36.46 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=28.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+..|.|||+|++..+|..|.+.+.... ....+++.+|
T Consensus 57 ~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 57 PGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 457999999999999999999987653 2345555554
No 88
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=83.71 E-value=0.9 Score=34.01 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=26.8
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+++.+.|||+|++.++|..|. .+.... ...++|+.|
T Consensus 44 ~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 44 SGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp SSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3456889999999999999998 555443 234556655
No 89
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=83.47 E-value=1.6 Score=35.74 Aligned_cols=37 Identities=19% Similarity=0.143 Sum_probs=28.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
++..+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 85 g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 85 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45678999999999999999998765432 45666655
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.41 E-value=0.7 Score=34.97 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=26.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+ +.... ...++|+.|
T Consensus 47 g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 47 GNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp SCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4457899999999999999999 65432 234556554
No 91
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.40 E-value=0.95 Score=34.76 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=26.7
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+.|||+|++.++|+.|.+.+.... ...++|+.|
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 6799999999999999998776542 345667666
No 92
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=83.24 E-value=1.6 Score=37.76 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=29.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC----CcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP 45 (424)
+++.+.|||+|++.++|..|.+.+....- ..++|+.|=
T Consensus 81 k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 81 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 33456899999999999999999877654 456777663
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=83.18 E-value=0.77 Score=35.85 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
++..+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 67 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 67 GRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45578999999999999999998765532 34555554
No 94
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.18 E-value=1 Score=35.73 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=27.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A 44 (424)
.+..+.|||+|++.++|..|.+.+... +...++|+.|
T Consensus 56 ~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 93 (116)
T 2cqd_A 56 GKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLA 93 (116)
T ss_dssp CCCCSEEEEEESSHHHHHHHHTCSSCEETTEECEEEES
T ss_pred CccceEEEEEECCHHHHHHHHHhCCCcCCCEEEEEEEc
Confidence 456789999999999999999876541 1234566665
No 95
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=83.18 E-value=1.1 Score=35.75 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
+.+.|||+|++.++|+.|.+.+....- ..++|+.|
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 357999999999999999988765532 34556555
No 96
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=83.11 E-value=0.71 Score=35.15 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
.++.+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 54 GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 44578999999999999999997765432 33455544
No 97
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.90 E-value=1 Score=35.72 Aligned_cols=38 Identities=21% Similarity=0.075 Sum_probs=28.9
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
+..+.|||+|.+..+|..|.+.+.... ...+.|+.|+.
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 356789999999999999999887653 34566766653
No 98
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=82.81 E-value=0.89 Score=38.32 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=29.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
.++.+.|||+|++.++|..|.+.+.... ...++|+.|..
T Consensus 78 ~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 78 KTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3456899999999999999999876543 34566776643
No 99
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.71 E-value=1.1 Score=34.84 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=27.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
+++.+.|||+|++.++|..|. .+.... ...++|+.|-.
T Consensus 53 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 445789999999999999999 554432 23466666643
No 100
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=82.44 E-value=1.1 Score=34.76 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=26.2
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 4699999999999999998766542 2345666654
No 101
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.23 E-value=0.94 Score=34.39 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=27.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhccC-C--CCCcceeccCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQG-V--NPTEWVTEQAP 45 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~-~--~~~~~~v~~AP 45 (424)
+.+.|||+|++.++|..|.+.+.. . +...++|+.|-
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 468999999999999999998776 3 23456666663
No 102
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.61 E-value=1.5 Score=34.25 Aligned_cols=45 Identities=22% Similarity=0.166 Sum_probs=30.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCCCeecC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQDVHWP 53 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW~ 53 (424)
.+++.+.|||+|++.++|..|.+. ....- ....|..| .++++.|.
T Consensus 53 ~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~-~~~~~~~~ 99 (104)
T 1wg5_A 53 QGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS-SRAEVRTS 99 (104)
T ss_dssp SSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE-CTTTSCCS
T ss_pred CCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC-CHHHHHHh
Confidence 345678999999999999999987 43322 34556555 34555443
No 103
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=81.60 E-value=1.5 Score=33.78 Aligned_cols=35 Identities=23% Similarity=0.139 Sum_probs=25.8
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 67899999999999999998765332 234555544
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.52 E-value=1.6 Score=34.22 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=27.4
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
.+.|||+|++..+|..|.+.+.... ...++|+.|-.
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 6899999999999999998876543 23456666643
No 105
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=81.31 E-value=1.3 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=26.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
+..+.|||+|++.++|..|...+....- ..++|+.|
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 4578999999999999999987765432 33444444
No 106
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.22 E-value=1.8 Score=34.16 Aligned_cols=27 Identities=15% Similarity=0.195 Sum_probs=22.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
.+..+.|||+|++..+|..|.+.+...
T Consensus 63 g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 63 GTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp SCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345679999999999999999977654
No 107
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=81.15 E-value=1.7 Score=36.66 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=40.1
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC-----CCcceeccCC-------CCCCeecCCCCCchHHHHHHHHH
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN-----PTEWVTEQAP-------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~-----~~~~~v~~AP-------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
+..+.|||+|.+.++|..|.+.+.... .....+..+. +...|.=.||..+..+..++..+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 116 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMF 116 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHH
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHH
Confidence 457899999999999999998765432 2233333332 33447777887776666666643
No 108
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.13 E-value=1.2 Score=33.04 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
+++.+.|||+|++.++|..|.+.+...
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (85)
T 1x4e_A 44 NKCKGYGFVDFDSPSAAQKAVTALKAS 70 (85)
T ss_dssp CSCCSEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCcCcEEEEEECCHHHHHHHHHHhcCC
Confidence 455789999999999999999876544
No 109
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=81.07 E-value=1.5 Score=34.33 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
+++.|.|||+|++..+|..|.+ +..
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (107)
T 2lmi_A 52 GKRRGDALIEMESEQDVQKALE-KHR 76 (107)
T ss_dssp STTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred CCEeeEEEEEECCHHHHHHHHH-hCc
Confidence 5678899999999999999998 543
No 110
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=80.74 E-value=2.3 Score=34.37 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=28.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 567899999999999999998776543 3456666664
No 111
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=80.58 E-value=1.9 Score=35.57 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=28.6
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
..+..+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 345678999999999999999987765432 35566655
No 112
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.21 E-value=1.2 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=27.5
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 67 ~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 67 GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 357899999999999999998776543 334556655
No 113
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=80.05 E-value=1.2 Score=35.47 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=23.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
++..+.|||+|++.++|..|.+.+...
T Consensus 79 g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 79 SLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp SCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 456789999999999999999987654
No 114
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=79.94 E-value=1.9 Score=33.20 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=26.5
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 57 NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 6899999999999999999876543 344566655
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.94 E-value=1.7 Score=33.36 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=26.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
..+.|||+|++..+|..|.+.+.... ...++|+.|
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35799999999999999999776542 334566655
No 116
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=79.59 E-value=2 Score=34.26 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.9
Q ss_pred ceEEEEeCCHHHHHHHHHhccCC
Q 014468 12 AAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 12 ~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
+.|||+|++.++|..|.+.+...
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEECCHHHHHHHHHHhCCC
Confidence 89999999999999999987654
No 117
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=79.50 E-value=0.7 Score=34.76 Aligned_cols=38 Identities=18% Similarity=-0.025 Sum_probs=24.4
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAPA 46 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP~ 46 (424)
++.+.|||+|++..+|+.+.+.....+...+++..|..
T Consensus 40 ~~~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 40 PFRAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCC
T ss_pred CCCCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCC
Confidence 36789999999999997654332222334555665543
No 118
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.29 E-value=2 Score=32.30 Aligned_cols=35 Identities=20% Similarity=0.154 Sum_probs=26.3
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 3499999999999999998776542 3456666553
No 119
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.27 E-value=1.8 Score=34.15 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
.+..+.|||+|++.++|..|.+.+...
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 53 GKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999999999999999876544
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.17 E-value=1.6 Score=32.24 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred CCceEEEEeCCHHHHHHHHHhc
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQ 31 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~ 31 (424)
..+.|||+|++.++|..|.+.+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHh
Confidence 3589999999999999999876
No 121
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.93 E-value=1.3 Score=34.83 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=26.3
Q ss_pred ceEEEEeCCHHHHHHHHHhccCCCC-------CcceeccCC
Q 014468 12 AAAFVSFNSRYGAAIALHIQQGVNP-------TEWVTEQAP 45 (424)
Q Consensus 12 ~~aFVtF~s~~~A~~a~q~~~~~~~-------~~~~v~~AP 45 (424)
+.|||+|++.++|+.|.+.+....- ..++|+.|-
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 8999999999999999998764321 346676663
No 122
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.89 E-value=1.8 Score=32.85 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCC
Q 014468 13 AAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQ 48 (424)
Q Consensus 13 ~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~ 48 (424)
.|||+|.+..+|..|.+ +.... ...++|+.|.+.+
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 99999999999999998 65442 2345666665443
No 123
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.66 E-value=1.8 Score=34.77 Aligned_cols=42 Identities=10% Similarity=0.011 Sum_probs=30.4
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCCCCCCee
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAPAPQDVH 51 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP~P~DIi 51 (424)
..+.|||+|++.++|..|.+.+... +...++|+.|-..+++.
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~ 106 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 106 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccccc
Confidence 4589999999999999999866421 33467777776555544
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=78.65 E-value=1.7 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.0
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+.|.|||+|.+.++|..|.+.+...+ ...++|+.|
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 68999999999999999999887654 345777777
No 125
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=78.52 E-value=2 Score=36.08 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=28.6
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+++.+.|||+|.+.++|..|.+.+.... ...++|+.|
T Consensus 108 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 108 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35578899999999999999998876543 234556554
No 126
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=78.49 E-value=2.6 Score=38.69 Aligned_cols=60 Identities=15% Similarity=0.066 Sum_probs=46.3
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHHHH
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
+..+.|||+|.+..+|..|.+.+.... ...++|+.|.+..-|.=.||.....+..++.++
T Consensus 56 ~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~v~nl~~~~t~~~l~~~F 117 (261)
T 3sde_A 56 RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALTVKNLSPVVSNELLEQAF 117 (261)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEEEESCCTTCCHHHHHHHH
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCcccccCCCCCCCHHHHHHHH
Confidence 346899999999999999998776543 345778888877788888998776666666543
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=78.46 E-value=3.4 Score=34.24 Aligned_cols=60 Identities=18% Similarity=0.099 Sum_probs=37.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCC--------CCCeecCCCCCchHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPA--------PQDVHWPFFSSSFMKRWICKL 67 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~ 67 (424)
.+..+.|||+|.+.++|..|.+.+....- ..+.++.|.. ...+.=.||.....+..++..
T Consensus 38 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~ 107 (166)
T 3md3_A 38 NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNA 107 (166)
T ss_dssp -CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHH
Confidence 34578999999999999999987665422 2344444422 222555677665555555543
No 128
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=78.13 E-value=4.3 Score=35.40 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=39.5
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC-----------------CCCCeecCCCCCchHHHHHHHH
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP-----------------APQDVHWPFFSSSFMKRWICKL 67 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP-----------------~P~DIiW~NL~~~~~~r~~R~~ 67 (424)
.++..+.|||+|++.++|..|.+.+....- ..+.+..+. ...-|+-.||.....+..++..
T Consensus 66 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~ 145 (216)
T 2qfj_A 66 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSV 145 (216)
T ss_dssp C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHH
T ss_pred CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHH
Confidence 345789999999999999999997765432 334454332 2234666677665555555544
Q ss_pred H
Q 014468 68 A 68 (424)
Q Consensus 68 ~ 68 (424)
+
T Consensus 146 f 146 (216)
T 2qfj_A 146 F 146 (216)
T ss_dssp H
T ss_pred H
Confidence 3
No 129
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=78.00 E-value=0.92 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=19.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHh
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHI 30 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~ 30 (424)
+++.+.|||+|++..+|..|.+.
T Consensus 50 g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 50 GRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp CCEEEEEEEEESSTHHHHHHHHS
T ss_pred CccccEEEEEECCHHHHHHHHHh
Confidence 45578999999999999999865
No 130
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.91 E-value=1.4 Score=34.37 Aligned_cols=37 Identities=19% Similarity=0.075 Sum_probs=25.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.++.+.|||+|++.++|+.|.+. ..+. ...++|..|.
T Consensus 52 g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 52 GRVTGEADVEFATHEDAVAAMAK-DKANMQHRYVELFLNS 90 (102)
T ss_dssp SCEEEEEEEECSSSHHHHHHHTT-SSCCSSSSCCEEEEEC
T ss_pred CCEeeEEEEEECCHHHHHHHHHh-CCCeECCcEEEEEECC
Confidence 45678999999999999999963 3322 2345555543
No 131
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=77.71 E-value=1.8 Score=35.56 Aligned_cols=37 Identities=24% Similarity=0.211 Sum_probs=27.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
++..+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 81 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3457899999999999999999876543 334566655
No 132
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=77.56 E-value=2.2 Score=34.11 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=27.2
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+++.+.|||+|++.++|..|. .+.... ...++|+.|-
T Consensus 74 ~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 74 SGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp TSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3556889999999999999999 454432 2346666653
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=77.50 E-value=2.3 Score=33.49 Aligned_cols=34 Identities=24% Similarity=0.186 Sum_probs=26.5
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 5899999999999999998876543 334566655
No 134
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.76 E-value=2.2 Score=33.77 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC--CCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV--NPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~--~~~~~~v~~A 44 (424)
.+..+.|||+|++..+|..|.+. ... +...++|+.|
T Consensus 66 g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 66 KRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp SSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 45678999999999999999876 322 2234566655
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.44 E-value=2.2 Score=32.20 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=25.5
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.+.|||+|++.++|..|.+.+.... ...++|+.|
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3499999999999999998766542 234566655
No 136
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=76.18 E-value=1.7 Score=35.88 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=28.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
.++..+.|||+|.+..+|..|.+.+.... ...++|+.|
T Consensus 88 ~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 127 (143)
T 3egn_A 88 EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFA 127 (143)
T ss_dssp ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEEC
T ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35668899999999999999999876543 234556655
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=75.71 E-value=1.7 Score=35.50 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=27.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC----C--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV----N--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~----~--~~~~~v~~A 44 (424)
++..|.|||+|++. +|..|.+.+... . ...++|+.|
T Consensus 64 g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a 105 (131)
T 2m2b_A 64 QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFA 105 (131)
T ss_dssp SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEEC
T ss_pred CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEEC
Confidence 45679999999999 999999888765 2 234556655
No 138
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=75.67 E-value=2 Score=36.54 Aligned_cols=37 Identities=19% Similarity=0.067 Sum_probs=28.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
++..|.|||+|.+..+|..|.+.+....- ..++|+.|
T Consensus 96 g~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 96 GQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp CCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 45578999999999999999998776532 34566655
No 139
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=75.58 E-value=4 Score=33.30 Aligned_cols=38 Identities=24% Similarity=0.157 Sum_probs=30.1
Q ss_pred Cc-eEEEEeCCHHHHHHHHHhccCCCC----CcceeccCCCCC
Q 014468 11 VA-AAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQAPAPQ 48 (424)
Q Consensus 11 ~~-~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP~P~ 48 (424)
.+ .|||+|.+..+|..|.+.+....- ..++|+.|-.++
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 37 599999999999999999887653 357888775444
No 140
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=75.55 E-value=1.8 Score=34.85 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=27.5
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
+.|.|||+|++.++|..|.+.+.+.. ...++++.+|
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 47999999999999999999987653 2344555544
No 141
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.48 E-value=1.4 Score=35.60 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=26.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
+++.+.|||+|++..+|..|.+ +....- ..+.|..|
T Consensus 64 g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 64 GKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp SSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4557899999999999999998 544332 34556555
No 142
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=75.09 E-value=3.1 Score=35.06 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=40.6
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCC--CCCcceeccCCC--------CCCeecCCCCCchHHHHHHHHHH
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGV--NPTEWVTEQAPA--------PQDVHWPFFSSSFMKRWICKLAV 69 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~--~~~~~~v~~AP~--------P~DIiW~NL~~~~~~r~~R~~~~ 69 (424)
..+..+.|||+|.+.++|..|.+ +... ....++++.|.. ..-|.=.||..+..+..++..+.
T Consensus 50 ~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 121 (175)
T 1fje_B 50 TGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFE 121 (175)
T ss_dssp EETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCT
T ss_pred CCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHH
Confidence 34567999999999999999996 4332 123455555532 23466777777666666665543
No 143
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.00 E-value=1.6 Score=33.87 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+..+.|||+|++.++|..|.+. .... ...++|+.|
T Consensus 56 ~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 56 QSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp CEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 4568999999999999999887 3322 234555554
No 144
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=74.28 E-value=1.5 Score=33.34 Aligned_cols=36 Identities=19% Similarity=-0.018 Sum_probs=23.0
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~A 44 (424)
++.|.|||+|++..+|..+.......+.....+..|
T Consensus 46 ~srGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQSLCGEDLIIKGISVHISNA 81 (89)
T ss_dssp SCCSEEEEEESCHHHHHHHTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEc
Confidence 467999999999999985433222223345556555
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.26 E-value=2.4 Score=34.17 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=21.8
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
.+.|||+|++.++|..|.+.+..+
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 579999999999999999988775
No 146
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.87 E-value=2.3 Score=33.26 Aligned_cols=22 Identities=23% Similarity=0.147 Sum_probs=20.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALH 29 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q 29 (424)
+++.|.|||+|++..+|..|..
T Consensus 49 g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 49 KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp TSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCccEEEEEECCHHHHHHHHH
Confidence 5578999999999999999988
No 147
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.80 E-value=2.9 Score=32.86 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=25.6
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+... +...+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 589999999999999998865422 23456666553
No 148
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=73.60 E-value=1.5 Score=35.59 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.9
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPA 46 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~ 46 (424)
.|.|||+|.+..+|..|.+.+.... ...++++.+|+
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4789999999999999999988763 33455666553
No 149
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.47 E-value=2.6 Score=33.51 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALH 29 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q 29 (424)
+++.|.|||+|++.++|..|.+
T Consensus 53 g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCCeEEEEEECCHHHHHHHHh
Confidence 5578999999999999999984
No 150
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.36 E-value=3.1 Score=32.94 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=25.9
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+... +...++|+.|-
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 589999999999999999866432 23456666664
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=73.19 E-value=1.7 Score=36.15 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=26.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|++.++|..|.+ +.... ....+|..|
T Consensus 85 g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 85 GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 4567899999999999999998 54332 234556655
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=72.72 E-value=2.3 Score=33.74 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHh
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHI 30 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~ 30 (424)
.++.+.|||+|++.++|..|.+.
T Consensus 54 g~~~G~afV~F~~~~~a~~Al~~ 76 (114)
T 2cpy_A 54 GQGLGQALVQFKNEDDARKSERL 76 (114)
T ss_dssp SSCSSCEEEECSSHHHHHHHGGG
T ss_pred CCcceEEEEEECCHHHHHHHHHh
Confidence 45789999999999999999876
No 153
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.46 E-value=2.3 Score=33.48 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=26.7
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAPA 46 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP~ 46 (424)
.+.|||+|++.++|..|.+.+... +...+.|+.|-.
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 378999999999999999876532 234566766653
No 154
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=72.23 E-value=3.1 Score=30.72 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.6
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
+..+.|||+|++.++|..|. .+...
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 34799999999999999998 65543
No 155
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=72.06 E-value=6.6 Score=32.74 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=38.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC------CCCCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
.+..+.|||+|++.++|..|. .+.... ...+.++.+. .+.-|.=.||..+..+..++..+
T Consensus 48 ~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 48 NQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp ETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred cCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 345799999999999999998 443321 2234444332 23456667777766666666644
No 156
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=71.21 E-value=3.1 Score=32.66 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=26.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~A 44 (424)
++..|.|||+|.+..+|..|.+..... +...++|+.|
T Consensus 64 g~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 64 KRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 101 (109)
T ss_dssp CCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEc
Confidence 456789999999999999999865311 2234556655
No 157
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=70.99 E-value=2.9 Score=32.84 Aligned_cols=36 Identities=17% Similarity=0.155 Sum_probs=26.2
Q ss_pred CCCceEEEEeCCHHHHHHHHHhccCCC----CCcceeccC
Q 014468 9 KEVAAAFVSFNSRYGAAIALHIQQGVN----PTEWVTEQA 44 (424)
Q Consensus 9 ~~~~~aFVtF~s~~~A~~a~q~~~~~~----~~~~~v~~A 44 (424)
+..+.|||.|++.++|..|.+.+.... ...+.|+.|
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 345899999999999999998765432 234555544
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=70.69 E-value=3 Score=34.78 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=26.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
.++.+.|||+|++.++|..|. .+.... ...+.|..|..+
T Consensus 83 g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 83 GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 567889999999999999998 333322 234556555443
No 159
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=70.15 E-value=1.7 Score=36.43 Aligned_cols=62 Identities=10% Similarity=0.059 Sum_probs=37.6
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCCCcceeccCC------CCCCeecCCCCCchHHHHHHHHH
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNPTEWVTEQAP------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~~~~~v~~AP------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
.+++.|.|||+|.+.++|..|.+..+.-+...+.+..+. ....|.=.||..+..+..++..+
T Consensus 41 ~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F 108 (167)
T 2cjk_A 41 TGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFF 108 (167)
T ss_dssp TSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHH
T ss_pred CCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccchhhccCCCeEEECCCCCCCCHHHHHHHH
Confidence 355679999999999999999885322222233343332 22345566666665555555543
No 160
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=69.70 E-value=6.1 Score=34.91 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.1
Q ss_pred CCceEEEEeCCHHHHHHHHHhccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
..+.|||+|.+..+|+.|.+.+..
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng 64 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNN 64 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999987654
No 161
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=68.95 E-value=3.3 Score=35.19 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
+++.+.|||+|.+..+|..|.+.+.... ...+.|..|
T Consensus 111 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 111 GFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp SSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 3457899999999999999998876543 234555555
No 162
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=68.88 E-value=2.5 Score=34.60 Aligned_cols=23 Identities=43% Similarity=0.394 Sum_probs=20.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHh
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHI 30 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~ 30 (424)
+++.|.|||+|++.++|..|.+.
T Consensus 81 GrsrGfaFV~F~~~e~A~~Al~~ 103 (126)
T 2hgm_A 81 GKITGEAFVQFASQELAEKALGK 103 (126)
T ss_dssp SSSCSEEEEEESSTTHHHHHHTT
T ss_pred CCCceEEEEEECCHHHHHHHHHH
Confidence 56789999999999999999875
No 163
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=71.44 E-value=1 Score=35.77 Aligned_cols=38 Identities=26% Similarity=0.193 Sum_probs=27.6
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP 45 (424)
.+..+.|||+|++.++|..|.+.+.... ...++|+.|-
T Consensus 54 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (116)
T 2lcw_A 54 GKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 93 (116)
Confidence 3457899999999999999988765543 2345566553
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=67.94 E-value=2.4 Score=33.99 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=20.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhcc
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQ 32 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~ 32 (424)
+++.+.|||+|++.++|..|.+ +.
T Consensus 58 g~~~G~afV~F~~~~~a~~Al~-~~ 81 (118)
T 2db1_A 58 GRQSGEAFVELESEDDVKLALK-KD 81 (118)
T ss_dssp SCEEEEEEEEBSSHHHHHHHGG-GT
T ss_pred CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 4567899999999999999998 44
No 165
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.83 E-value=2.7 Score=34.08 Aligned_cols=35 Identities=11% Similarity=0.128 Sum_probs=25.3
Q ss_pred CceEEEEeCCHHHHHHHHHhccC----CCCCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQG----VNPTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~----~~~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+.. -+...+.|+.|-
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 48999999999999999886542 123455666653
No 166
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.82 E-value=3.6 Score=32.10 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC----CCCcceeccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV----NPTEWVTEQAP 45 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~----~~~~~~v~~AP 45 (424)
.+.|||+|++.++|..|.+.+... +...+.|+.|-
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 589999999999999998865321 22345666654
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=67.70 E-value=5.5 Score=35.13 Aligned_cols=61 Identities=11% Similarity=0.011 Sum_probs=39.9
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC--------CCCCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP--------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP--------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
++..+.|||+|++..+|..|.+.+..... ..+++..+. ....|.=.||..+..+..++.++
T Consensus 54 g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F 124 (213)
T 4f02_A 54 RRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 124 (213)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHH
T ss_pred CCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccccccccccccceECCcccccHHHHHHHHH
Confidence 45678999999999999999987765421 223344333 22346667777766666666543
No 168
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.45 E-value=2.3 Score=34.65 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHh
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHI 30 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~ 30 (424)
+++.+.|||+|++.++|..|.+.
T Consensus 65 gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 65 GRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp SCEEEEEEECCSSHHHHHHHHTT
T ss_pred CCEeeEEEEEECCHHHHHHHHHh
Confidence 45678999999999999999875
No 169
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=65.51 E-value=7.8 Score=33.35 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCceEEEEeCCHHHHHHHHHhccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
+.+.|||+|.+.++|..|.+.+..
T Consensus 40 ~~g~afV~f~~~~~a~~A~~~l~~ 63 (198)
T 1qm9_A 40 KKENALVQMADGNQAQLAMSHLNG 63 (198)
T ss_dssp CSSCCEEECTTTHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCC
Confidence 368999999999999999986654
No 170
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=64.27 E-value=12 Score=34.17 Aligned_cols=27 Identities=37% Similarity=0.315 Sum_probs=22.7
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccC
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
..+..+.|||+|++.++|..|.+.+..
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 48 SLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 445679999999999999999977654
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=64.22 E-value=11 Score=33.48 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCceEEEEeCCHHHHHHHHHhccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
..+.|||+|.+.++|..|.+.+..
T Consensus 71 ~~g~afV~F~~~~~A~~Ai~~l~g 94 (229)
T 2adc_A 71 KKENALVQMADGNQAQLAMSHLNG 94 (229)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCC
Confidence 368999999999999999986554
No 172
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=63.37 E-value=8.2 Score=32.93 Aligned_cols=61 Identities=7% Similarity=0.020 Sum_probs=36.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC-CCCcceeccCC------------CCCCeecCCCCCchHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV-NPTEWVTEQAP------------APQDVHWPFFSSSFMKRWICKLA 68 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~-~~~~~~v~~AP------------~P~DIiW~NL~~~~~~r~~R~~~ 68 (424)
+++.+.|||+|.+.++|..|.+..... +...+.+..|. ....|.=.||.....+..++.++
T Consensus 52 g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 125 (196)
T 1l3k_A 52 KRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 125 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHH
T ss_pred CCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHH
Confidence 345679999999999999998762111 11223333332 12346667777666666555544
No 173
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=63.25 E-value=6.6 Score=33.62 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALH 29 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q 29 (424)
.+..+.|||+|.+.++|..|.+
T Consensus 48 ~~~~g~afV~F~~~~~A~~Al~ 69 (198)
T 2yh0_A 48 NQDKNFAFLEFRSVDETTQAMA 69 (198)
T ss_dssp ETTTTEEEEEESCSHHHHHHGG
T ss_pred cCCCCEEEEEeCCHHHHHHHHH
Confidence 4567999999999999999983
No 174
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=62.98 E-value=5.4 Score=36.71 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=31.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQ 48 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~ 48 (424)
+++.+.|||+|++..+|..|.+.+....- ..++|+.|...+
T Consensus 223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 44578999999999999999998876543 356777775444
No 175
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=62.97 E-value=7.2 Score=33.66 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.8
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
.+..+.|||+|++.++|..|.+.+...
T Consensus 126 g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 126 GRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp SSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 446789999999999999999877654
No 176
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=62.60 E-value=4 Score=32.04 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.0
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQG 33 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~ 33 (424)
++..+.|||+|++..+|..|. .+..
T Consensus 64 g~~~g~afV~f~~~~~a~~A~-~l~g 88 (114)
T 2cq4_A 64 RRSKGIAYVEFCEIQSVPLAI-GLTG 88 (114)
T ss_dssp SSCCCCEEEEESCGGGHHHHH-HHTT
T ss_pred CccCcEEEEEeCcHHHHHHHH-HcCC
Confidence 456789999999999999999 5544
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=62.51 E-value=4 Score=36.92 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=28.5
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAP 45 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP 45 (424)
.+..+.|||+|++..+|..|.+.+....- ..++|+.|-
T Consensus 109 g~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 109 GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp CCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 34567999999999999999987765432 356666663
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=61.77 E-value=7.2 Score=32.09 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhccCCCC----CcceeccCCCC
Q 014468 13 AAFVSFNSRYGAAIALHIQQGVNP----TEWVTEQAPAP 47 (424)
Q Consensus 13 ~aFVtF~s~~~A~~a~q~~~~~~~----~~~~v~~AP~P 47 (424)
.|||+|.+..+|..|.+.+....- ..++++.|-..
T Consensus 68 qAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 68 QALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 499999999999999999887643 34677777543
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=61.69 E-value=5.7 Score=36.29 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=27.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccC------CCCCcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQG------VNPTEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~------~~~~~~~v~~A 44 (424)
+++.+.|||+|.+..+|..|.+.+.+ ..+....|+.|
T Consensus 134 g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 134 GRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred CCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 44578999999999999999988733 22445566555
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=60.94 E-value=5.7 Score=34.58 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=23.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN 35 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~ 35 (424)
+++.+.|||+|++.++|..|.+.+....
T Consensus 164 g~~~g~afV~F~~~~~A~~A~~~l~g~~ 191 (216)
T 2qfj_A 164 GKHKGYGFIEYEKAQSSQDAVSSMNLFD 191 (216)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCcCceEEEEecCHHHHHHHHHHccCCE
Confidence 3457899999999999999999876543
No 181
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=60.38 E-value=5 Score=35.41 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
..+.|||+|++.++|..|.+.+....- ..++|+.|
T Consensus 142 ~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a 178 (213)
T 4f02_A 142 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 178 (213)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 468999999999999999998776533 34566665
No 182
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=58.64 E-value=9.2 Score=31.56 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=23.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN 35 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~ 35 (424)
.++.+.|||+|.+..+|..|.+.+....
T Consensus 107 ~~~~g~afV~f~~~~~a~~A~~~l~g~~ 134 (150)
T 2i2y_A 107 RNPPGFAFVEFEDPRDAADAVRELDGRT 134 (150)
T ss_dssp SSSCSEEEEEESSHHHHHHHHHHHSSSC
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCCE
Confidence 3457999999999999999998776543
No 183
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.61 E-value=6.7 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=23.8
Q ss_pred CceEEEEeCCHHHHHHHHHhccCCC--CCcceeccC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQA 44 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~A 44 (424)
...+||||++.++|..|.+ +...+ ..+.+|++|
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk 83 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALK 83 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence 3459999999999999998 55443 235666655
No 184
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=56.39 E-value=2.2 Score=32.83 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALH 29 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q 29 (424)
++..+.|||+|++.++|..|.+
T Consensus 47 g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 47 GVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp SCEEEEEEEEESSCCCHHHHTT
T ss_pred CCccceEEEEECCHHHHHHHHh
Confidence 4457899999999999999988
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=56.09 E-value=7.6 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=26.2
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAP 47 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P 47 (424)
+++.+.|||+|++.++|..|.+. .... ...+.|+.|-..
T Consensus 143 g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 143 GKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred CCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 45578999999999999999875 2221 234566666433
No 186
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=54.15 E-value=19 Score=29.72 Aligned_cols=62 Identities=2% Similarity=-0.176 Sum_probs=40.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCC------------CC---------CcceeccCCCCCCeecCCCCCchHHHHHHH
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGV------------NP---------TEWVTEQAPAPQDVHWPFFSSSFMKRWICK 66 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~------------~~---------~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~ 66 (424)
.+..|.|||+|.+..+|..|.+..... .+ ........+....|+-.||...-.+..++.
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 356899999999999999997654311 00 011111223455688889988877777776
Q ss_pred HHH
Q 014468 67 LAV 69 (424)
Q Consensus 67 ~~~ 69 (424)
++.
T Consensus 90 ~F~ 92 (158)
T 2kn4_A 90 VFE 92 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 187
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=53.89 E-value=12 Score=37.41 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=32.8
Q ss_pred ccCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccCCCCCCeec
Q 014468 7 AGKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQAPAPQDVHW 52 (424)
Q Consensus 7 ~~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~AP~P~DIiW 52 (424)
..++.+.|||+|.+..+|..|.+.+..... ..+.|+.|-....=-|
T Consensus 140 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~~~~ 187 (437)
T 3pgw_S 140 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGW 187 (437)
T ss_pred CCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCCCCC
Confidence 345688999999999999999988776543 3466766643333334
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=52.60 E-value=9.9 Score=34.74 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.0
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVNP 36 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~~ 36 (424)
..+.|||+|++..+|..|.+.+.....
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 468999999999999999988876543
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=46.43 E-value=19 Score=32.96 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=40.5
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCCC--CCcceeccCCCCCCeecCCCCCchHHHHHHHHHH
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGVN--PTEWVTEQAPAPQDVHWPFFSSSFMKRWICKLAV 69 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~~--~~~~~v~~AP~P~DIiW~NL~~~~~~r~~R~~~~ 69 (424)
..+.|||+|.+.++|..|.+ +.... ...+.++.++ ..-|.=.||.....+..++.++.
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~ 139 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT-ECTLWMTNFPPSYTQRNIRDLLQ 139 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-SCEEEEECCCTTCCHHHHHHHHH
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-CCEEEEECCCCCCCHHHHHHHHH
Confidence 46999999999999999995 43322 2345566653 55677788887776666666543
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=43.92 E-value=19 Score=33.05 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=25.3
Q ss_pred cCCCceEEEEeCCHHHHHHHHHhccCCCC--CcceeccC
Q 014468 8 GKEVAAAFVSFNSRYGAAIALHIQQGVNP--TEWVTEQA 44 (424)
Q Consensus 8 ~~~~~~aFVtF~s~~~A~~a~q~~~~~~~--~~~~v~~A 44 (424)
+++.+.|||+|.+..+|..|.+.+..... ..+.++.|
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34678999999999999999997765432 23444443
No 191
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=43.29 E-value=16 Score=35.23 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=21.9
Q ss_pred CCceEEEEeCCHHHHHHHHHhccCC
Q 014468 10 EVAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 10 ~~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
..+.|||+|++.++|+.|.+.+..+
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3589999999999999999987654
No 192
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.17 E-value=44 Score=26.25 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=30.5
Q ss_pred ceEEEEeCCHHHHHHHHHh-ccCCCCCcceeccCC--CCCCeecCCCC
Q 014468 12 AAAFVSFNSRYGAAIALHI-QQGVNPTEWVTEQAP--APQDVHWPFFS 56 (424)
Q Consensus 12 ~~aFVtF~s~~~A~~a~q~-~~~~~~~~~~v~~AP--~P~DIiW~NL~ 56 (424)
+.|.|||.+...|+.+.+. .+.-+.....|.+.| +|+-+.-++|.
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~~~r~ll~gl~ 95 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRAPARLLLQGLP 95 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCCCCCCCCCSCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCCcceEeeecCC
Confidence 8999999999998887765 443344566666554 45555555554
No 193
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=32.80 E-value=23 Score=22.18 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 014468 269 FFLAPLILPFLLVYYCLG 286 (424)
Q Consensus 269 s~i~Plilp~~~lyF~~~ 286 (424)
+.+.|+++.++.+||++-
T Consensus 4 ~~~l~~v~~~~ifYFl~i 21 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMIL 21 (37)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 346688888888888763
No 194
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.55 E-value=22 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=18.6
Q ss_pred CceEEEEeCCHHHHHHHHHhccCC
Q 014468 11 VAAAFVSFNSRYGAAIALHIQQGV 34 (424)
Q Consensus 11 ~~~aFVtF~s~~~A~~a~q~~~~~ 34 (424)
...+||||++.++|..|.+ +...
T Consensus 58 ~d~~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 58 QGQMLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp TTEEEEECSCSHHHHHHHH-GGGS
T ss_pred cCcEEEEEcChHHHHHHHh-cCCe
Confidence 3449999999999999998 5544
No 195
>2ldf_A Sarafotoxin-M, SRTX-M; endothelin-like peptide; NMR {Atractaspis microlepidota}
Probab=23.59 E-value=23 Score=20.26 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=5.7
Q ss_pred CeecCCC
Q 014468 49 DVHWPFF 55 (424)
Q Consensus 49 DIiW~NL 55 (424)
||||-|=
T Consensus 18 DiIWvn~ 24 (26)
T 2ldf_A 18 DVIWDEP 24 (26)
T ss_dssp TCCCSCC
T ss_pred cEEEeCC
Confidence 8999884
No 196
>2lde_A Sarafotoxin-I3; endothelin-like peptide; NMR {Synthetic}
Probab=22.89 E-value=23 Score=20.35 Aligned_cols=8 Identities=38% Similarity=0.563 Sum_probs=6.5
Q ss_pred CCeecCCC
Q 014468 48 QDVHWPFF 55 (424)
Q Consensus 48 ~DIiW~NL 55 (424)
-||||-|-
T Consensus 17 lDiIWvnt 24 (26)
T 2lde_A 17 KDVIWVNR 24 (26)
T ss_dssp TTCSTTTC
T ss_pred ccEEEecC
Confidence 58999884
No 197
>1edn_A Endothelin-1; signal polypeptide G-protein coupled-receptor ligand, vasoconstrictor; 2.18A {Homo sapiens} SCOP: j.28.1.1 PDB: 1v6r_A 6cmh_A*
Probab=22.32 E-value=21 Score=20.48 Aligned_cols=8 Identities=25% Similarity=0.829 Sum_probs=4.3
Q ss_pred CCeecCCC
Q 014468 48 QDVHWPFF 55 (424)
Q Consensus 48 ~DIiW~NL 55 (424)
-||||.|-
T Consensus 17 ldiIWvnt 24 (26)
T 1edn_A 17 LDIIWXXX 24 (26)
T ss_dssp TTSCC---
T ss_pred ccEEEeec
Confidence 58999884
No 198
>1srb_A Sarafotoxins precursor; NMR {Atractaspis microlepidota andersoni} SCOP: j.28.1.1
Probab=20.50 E-value=25 Score=20.16 Aligned_cols=8 Identities=50% Similarity=1.020 Sum_probs=4.2
Q ss_pred CCeecCCC
Q 014468 48 QDVHWPFF 55 (424)
Q Consensus 48 ~DIiW~NL 55 (424)
-||||-|-
T Consensus 17 lDiIWvnt 24 (26)
T 1srb_A 17 QDVIWXXX 24 (26)
T ss_dssp CCCCC---
T ss_pred ccEEEeec
Confidence 48999884
Done!